Query 012699
Match_columns 458
No_of_seqs 779 out of 2592
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 05:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.2E-56 1.4E-60 362.9 30.7 330 18-456 109-479 (480)
2 KOG0318 WD40 repeat stress pro 100.0 8.3E-49 1.8E-53 333.8 41.5 410 16-458 51-560 (603)
3 KOG0271 Notchless-like WD40 re 100.0 1.4E-49 3E-54 325.7 27.3 291 138-457 106-438 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.4E-49 7.4E-54 327.4 23.6 285 144-456 172-458 (459)
5 KOG0286 G-protein beta subunit 100.0 5.1E-47 1.1E-51 300.0 33.0 296 133-456 41-343 (343)
6 KOG0291 WD40-repeat-containing 100.0 9.7E-44 2.1E-48 315.4 42.7 412 16-458 137-612 (893)
7 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-46 2.8E-51 312.1 22.7 279 73-414 177-458 (459)
8 KOG0286 G-protein beta subunit 100.0 3.2E-44 7E-49 284.2 29.8 294 18-363 49-343 (343)
9 KOG0291 WD40-repeat-containing 100.0 1E-42 2.2E-47 308.9 40.7 397 23-457 54-507 (893)
10 KOG0318 WD40 repeat stress pro 100.0 1.6E-42 3.6E-47 295.5 38.6 402 18-458 184-602 (603)
11 KOG0279 G protein beta subunit 100.0 1.6E-42 3.5E-47 272.9 32.2 291 139-457 7-312 (315)
12 KOG0319 WD40-repeat-containing 100.0 2.9E-43 6.2E-48 311.8 29.5 389 24-458 62-535 (775)
13 KOG0319 WD40-repeat-containing 100.0 9.3E-43 2E-47 308.6 30.4 416 14-456 182-617 (775)
14 KOG0279 G protein beta subunit 100.0 3.4E-42 7.4E-47 271.1 30.2 305 16-416 7-313 (315)
15 KOG0306 WD40-repeat-containing 100.0 1.7E-42 3.6E-47 307.4 31.4 286 142-457 368-663 (888)
16 KOG0315 G-protein beta subunit 100.0 1.1E-41 2.4E-46 263.8 30.3 295 82-437 9-309 (311)
17 KOG0306 WD40-repeat-containing 100.0 9.2E-41 2E-45 296.4 33.6 383 23-458 64-580 (888)
18 KOG0296 Angio-associated migra 100.0 1.7E-40 3.7E-45 270.9 30.4 331 17-458 57-398 (399)
19 KOG0273 Beta-transducin family 100.0 2.6E-40 5.6E-45 278.5 31.9 279 147-457 235-522 (524)
20 KOG0265 U5 snRNP-specific prot 100.0 8.1E-41 1.8E-45 266.0 26.0 297 139-457 39-337 (338)
21 KOG0315 G-protein beta subunit 100.0 1.9E-40 4E-45 257.0 25.5 274 160-458 11-288 (311)
22 KOG0284 Polyadenylation factor 100.0 2.9E-41 6.2E-46 279.2 20.3 283 145-456 94-378 (464)
23 KOG0645 WD40 repeat protein [G 100.0 1.1E-38 2.5E-43 250.2 31.9 290 138-458 5-311 (312)
24 KOG0295 WD40 repeat-containing 100.0 3E-39 6.4E-44 263.6 26.5 289 139-456 100-404 (406)
25 KOG0263 Transcription initiati 100.0 1.2E-39 2.6E-44 291.7 25.7 276 23-368 377-652 (707)
26 KOG0273 Beta-transducin family 100.0 9.7E-39 2.1E-43 269.0 28.7 290 138-457 170-481 (524)
27 KOG0282 mRNA splicing factor [ 100.0 4.7E-40 1E-44 277.9 19.4 295 138-456 205-503 (503)
28 KOG0263 Transcription initiati 100.0 3E-39 6.5E-44 289.2 25.1 280 138-457 369-648 (707)
29 KOG0285 Pleiotropic regulator 100.0 1.8E-38 4E-43 258.4 26.5 288 138-456 142-437 (460)
30 cd00200 WD40 WD40 domain, foun 100.0 3.3E-37 7.2E-42 271.9 35.1 287 141-456 3-289 (289)
31 KOG0293 WD40 repeat-containing 100.0 1.1E-38 2.4E-43 264.3 23.3 301 133-458 210-513 (519)
32 KOG0295 WD40 repeat-containing 100.0 2.8E-38 6.1E-43 257.9 24.5 290 17-415 101-405 (406)
33 KOG0284 Polyadenylation factor 100.0 3.2E-39 6.9E-44 267.2 18.7 248 141-416 132-380 (464)
34 KOG0285 Pleiotropic regulator 100.0 1.7E-37 3.6E-42 252.9 27.5 299 16-418 143-441 (460)
35 PLN00181 protein SPA1-RELATED; 100.0 1.4E-36 3E-41 300.6 39.2 293 143-457 479-792 (793)
36 KOG1407 WD40 repeat protein [F 100.0 2E-37 4.4E-42 241.8 26.0 289 141-458 14-311 (313)
37 KOG0266 WD40 repeat-containing 100.0 2.4E-36 5.2E-41 278.0 34.6 294 140-457 151-453 (456)
38 KOG0643 Translation initiation 100.0 2.3E-37 5E-42 242.3 23.0 290 142-457 5-316 (327)
39 KOG0265 U5 snRNP-specific prot 100.0 5.9E-36 1.3E-40 238.4 28.2 292 15-415 38-337 (338)
40 KOG0293 WD40 repeat-containing 100.0 1.1E-36 2.4E-41 252.5 24.5 297 15-418 215-515 (519)
41 KOG0276 Vesicle coat complex C 100.0 8.5E-36 1.9E-40 259.8 31.1 286 18-360 7-294 (794)
42 KOG1408 WD40 repeat protein [F 100.0 1.4E-35 2.9E-40 262.4 32.3 287 151-458 328-713 (1080)
43 KOG0316 Conserved WD40 repeat- 100.0 5.5E-36 1.2E-40 230.4 25.4 287 139-455 9-296 (307)
44 KOG0645 WD40 repeat protein [G 100.0 6.2E-35 1.4E-39 229.2 30.2 299 15-416 5-311 (312)
45 KOG0281 Beta-TrCP (transducin 100.0 6.7E-37 1.5E-41 248.6 18.4 250 139-420 229-481 (499)
46 KOG0282 mRNA splicing factor [ 100.0 8.6E-37 1.9E-41 258.2 18.3 293 14-414 204-503 (503)
47 cd00200 WD40 WD40 domain, foun 100.0 3.1E-34 6.8E-39 252.9 35.6 288 17-414 2-289 (289)
48 KOG0266 WD40 repeat-containing 100.0 4.9E-35 1.1E-39 269.4 29.8 293 18-365 152-454 (456)
49 KOG0276 Vesicle coat complex C 100.0 4.6E-35 1E-39 255.2 27.2 287 139-454 5-295 (794)
50 PLN00181 protein SPA1-RELATED; 100.0 7.9E-34 1.7E-38 281.1 38.6 302 19-415 478-792 (793)
51 KOG0278 Serine/threonine kinas 100.0 5.4E-36 1.2E-40 232.5 17.8 284 142-457 9-296 (334)
52 KOG0275 Conserved WD40 repeat- 100.0 7.1E-36 1.5E-40 240.6 17.6 290 22-363 211-507 (508)
53 KOG1063 RNA polymerase II elon 100.0 5.9E-34 1.3E-38 251.2 31.2 414 15-458 45-648 (764)
54 KOG0278 Serine/threonine kinas 100.0 1.8E-35 3.9E-40 229.6 18.5 290 16-368 6-300 (334)
55 KOG0296 Angio-associated migra 100.0 6.7E-34 1.5E-38 232.5 28.4 297 139-457 56-355 (399)
56 KOG0640 mRNA cleavage stimulat 100.0 2.7E-34 5.8E-39 230.0 23.0 300 139-456 104-424 (430)
57 KOG0275 Conserved WD40 repeat- 100.0 3.1E-35 6.6E-40 237.0 17.5 288 145-456 211-507 (508)
58 KOG0281 Beta-TrCP (transducin 100.0 5.2E-35 1.1E-39 237.6 19.0 273 145-458 195-477 (499)
59 KOG0316 Conserved WD40 repeat- 100.0 8.5E-34 1.8E-38 218.4 23.5 292 14-365 7-299 (307)
60 KOG1407 WD40 repeat protein [F 100.0 4.2E-33 9.1E-38 217.8 27.0 279 18-407 14-293 (313)
61 KOG1063 RNA polymerase II elon 100.0 2.2E-33 4.7E-38 247.6 28.5 423 15-458 182-763 (764)
62 KOG0313 Microtubule binding pr 100.0 3.3E-33 7.1E-38 229.6 25.4 310 61-456 100-416 (423)
63 KOG0772 Uncharacterized conser 100.0 4.3E-33 9.4E-38 237.7 25.6 298 138-455 158-484 (641)
64 KOG0292 Vesicle coat complex C 100.0 4.8E-33 1E-37 251.9 27.4 288 142-457 4-320 (1202)
65 KOG0292 Vesicle coat complex C 100.0 3.6E-32 7.9E-37 246.3 32.0 346 19-444 4-381 (1202)
66 KOG1446 Histone H3 (Lys4) meth 100.0 1.6E-31 3.6E-36 215.1 31.8 288 139-456 6-301 (311)
67 KOG0288 WD40 repeat protein Ti 100.0 6.1E-34 1.3E-38 236.3 17.9 292 138-456 166-459 (459)
68 KOG0283 WD40 repeat-containing 100.0 5.4E-33 1.2E-37 251.3 25.0 309 17-366 259-577 (712)
69 KOG0277 Peroxisomal targeting 100.0 9.8E-33 2.1E-37 214.9 22.9 281 151-456 12-307 (311)
70 KOG0643 Translation initiation 100.0 1.7E-32 3.6E-37 215.2 24.3 299 18-418 4-319 (327)
71 KOG0268 Sof1-like rRNA process 100.0 1.1E-33 2.4E-38 231.0 17.5 284 138-456 57-343 (433)
72 KOG0640 mRNA cleavage stimulat 100.0 7.7E-33 1.7E-37 221.7 21.5 315 17-416 105-426 (430)
73 KOG0313 Microtubule binding pr 100.0 1.4E-32 3.1E-37 225.9 22.7 284 22-365 103-418 (423)
74 KOG2096 WD40 repeat protein [G 100.0 1.3E-31 2.7E-36 215.5 26.0 299 139-456 78-400 (420)
75 KOG0305 Anaphase promoting com 100.0 7.2E-32 1.6E-36 237.8 26.8 275 151-457 181-460 (484)
76 KOG0283 WD40 repeat-containing 100.0 5E-32 1.1E-36 245.1 26.0 297 139-457 258-575 (712)
77 KOG0300 WD40 repeat-containing 100.0 9.7E-32 2.1E-36 216.2 23.3 304 125-458 126-476 (481)
78 KOG1539 WD repeat protein [Gen 100.0 3.1E-31 6.8E-36 238.8 28.6 384 14-458 192-606 (910)
79 KOG0268 Sof1-like rRNA process 100.0 1.4E-32 3.1E-37 224.6 18.1 289 16-420 58-349 (433)
80 KOG0289 mRNA splicing factor [ 100.0 4.7E-31 1E-35 220.6 27.4 284 148-457 220-505 (506)
81 KOG0288 WD40 repeat protein Ti 100.0 2.9E-32 6.3E-37 226.4 17.1 287 17-362 168-458 (459)
82 KOG0647 mRNA export protein (c 100.0 2.2E-30 4.8E-35 206.9 26.8 283 145-449 25-315 (347)
83 KOG0299 U3 snoRNP-associated p 100.0 3.4E-30 7.3E-35 217.2 27.5 293 140-452 135-450 (479)
84 KOG0641 WD40 repeat protein [G 100.0 6.4E-29 1.4E-33 190.6 32.0 255 141-458 83-349 (350)
85 KOG1446 Histone H3 (Lys4) meth 100.0 1.5E-29 3.4E-34 203.8 29.9 289 18-365 8-303 (311)
86 KOG2106 Uncharacterized conser 100.0 9E-29 2E-33 210.9 35.7 394 13-456 93-519 (626)
87 KOG2055 WD40 repeat protein [G 100.0 5.4E-30 1.2E-34 216.0 26.3 293 147-458 213-512 (514)
88 KOG0308 Conserved WD40 repeat- 100.0 7.9E-31 1.7E-35 230.0 22.1 354 22-457 19-392 (735)
89 KOG0299 U3 snoRNP-associated p 100.0 5.2E-30 1.1E-34 216.1 25.8 299 17-406 135-445 (479)
90 KOG0973 Histone transcription 100.0 5.5E-30 1.2E-34 238.0 27.7 256 139-418 61-357 (942)
91 KOG0310 Conserved WD40 repeat- 100.0 8.3E-30 1.8E-34 216.5 26.3 278 146-454 25-305 (487)
92 KOG2048 WD40 repeat protein [G 100.0 5.3E-28 1.2E-32 213.4 36.8 402 23-457 24-547 (691)
93 KOG0310 Conserved WD40 repeat- 100.0 7.7E-30 1.7E-34 216.7 23.9 294 10-366 13-310 (487)
94 KOG2106 Uncharacterized conser 100.0 3.2E-28 7E-33 207.6 33.6 410 18-457 148-625 (626)
95 PTZ00421 coronin; Provisional 100.0 7.8E-29 1.7E-33 227.1 31.8 270 146-439 19-314 (493)
96 KOG0301 Phospholipase A2-activ 100.0 1.4E-29 3.1E-34 223.8 25.6 281 138-457 5-287 (745)
97 KOG0277 Peroxisomal targeting 100.0 6.4E-30 1.4E-34 199.3 19.9 244 146-415 59-308 (311)
98 KOG0772 Uncharacterized conser 100.0 4.7E-30 1E-34 219.3 20.9 312 18-366 161-488 (641)
99 PTZ00421 coronin; Provisional 100.0 3.7E-28 8E-33 222.7 33.4 211 142-369 70-294 (493)
100 KOG1539 WD repeat protein [Gen 100.0 9.8E-29 2.1E-33 222.9 28.4 382 17-456 237-646 (910)
101 KOG0274 Cdc4 and related F-box 100.0 7.6E-29 1.6E-33 227.3 28.3 275 146-458 207-482 (537)
102 KOG1036 Mitotic spindle checkp 100.0 3.1E-28 6.7E-33 195.4 27.3 276 147-448 13-294 (323)
103 KOG0973 Histone transcription 100.0 9.3E-29 2E-33 229.9 28.0 287 145-458 11-355 (942)
104 KOG0274 Cdc4 and related F-box 100.0 1.4E-28 3.1E-33 225.6 28.6 274 83-427 218-493 (537)
105 KOG0264 Nucleosome remodeling 100.0 2.3E-29 4.9E-34 212.2 20.7 265 144-458 121-404 (422)
106 PTZ00420 coronin; Provisional 100.0 1.1E-27 2.3E-32 220.5 32.0 250 165-440 50-318 (568)
107 KOG0294 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 197.9 22.4 244 17-367 36-283 (362)
108 KOG0308 Conserved WD40 repeat- 100.0 3E-29 6.5E-34 220.1 20.2 288 145-457 19-326 (735)
109 KOG0647 mRNA export protein (c 100.0 3.6E-28 7.7E-33 194.3 24.0 270 75-406 31-313 (347)
110 KOG1408 WD40 repeat protein [F 100.0 2.8E-28 6E-33 216.5 25.6 360 29-417 329-714 (1080)
111 KOG0289 mRNA splicing factor [ 100.0 7.2E-28 1.6E-32 201.7 26.5 252 139-415 253-505 (506)
112 KOG0639 Transducin-like enhanc 100.0 1.5E-28 3.3E-33 209.5 21.4 284 145-457 417-703 (705)
113 KOG0300 WD40 repeat-containing 100.0 3.7E-28 8.1E-33 195.7 22.4 256 139-418 182-478 (481)
114 KOG4283 Transcription-coupled 100.0 9.7E-28 2.1E-32 191.2 24.4 292 144-457 40-364 (397)
115 PTZ00420 coronin; Provisional 100.0 4.5E-27 9.8E-32 216.4 31.9 235 139-399 66-319 (568)
116 KOG1332 Vesicle coat complex C 100.0 9.6E-29 2.1E-33 191.7 17.4 257 143-418 7-288 (299)
117 KOG2919 Guanine nucleotide-bin 100.0 1.8E-27 4E-32 192.0 23.5 281 150-449 52-361 (406)
118 KOG0305 Anaphase promoting com 100.0 5E-27 1.1E-31 207.3 28.2 243 146-418 216-463 (484)
119 KOG0294 WD40 repeat-containing 100.0 8.5E-27 1.8E-31 187.6 26.8 239 187-458 39-281 (362)
120 KOG2096 WD40 repeat protein [G 100.0 3.6E-27 7.8E-32 190.0 23.9 305 17-363 79-400 (420)
121 KOG1036 Mitotic spindle checkp 100.0 9E-27 1.9E-31 187.0 25.6 263 77-406 19-294 (323)
122 KOG1274 WD40 repeat protein [G 100.0 1.9E-26 4.2E-31 210.5 29.7 268 144-444 10-286 (933)
123 KOG0641 WD40 repeat protein [G 100.0 3.7E-26 8.1E-31 175.5 26.5 261 138-457 24-302 (350)
124 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.1E-26 1.3E-30 201.5 32.4 287 84-438 2-300 (300)
125 KOG1273 WD40 repeat protein [G 100.0 8.5E-27 1.8E-31 187.6 22.7 287 150-457 26-321 (405)
126 KOG0650 WD40 repeat nucleolar 100.0 6E-27 1.3E-31 203.9 23.1 297 136-456 389-733 (733)
127 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.7E-25 5.8E-30 197.4 34.4 274 160-458 2-279 (300)
128 KOG4328 WD40 protein [Function 100.0 8.2E-27 1.8E-31 196.8 22.6 301 138-456 177-493 (498)
129 KOG2055 WD40 repeat protein [G 100.0 2.4E-26 5.1E-31 194.2 25.1 248 145-416 255-512 (514)
130 KOG0639 Transducin-like enhanc 100.0 6.3E-27 1.4E-31 199.7 21.3 240 146-415 464-703 (705)
131 KOG0301 Phospholipase A2-activ 100.0 1.5E-26 3.3E-31 204.8 24.2 280 16-366 6-289 (745)
132 KOG0646 WD40 repeat protein [G 100.0 7E-27 1.5E-31 197.7 21.1 263 165-457 13-306 (476)
133 KOG0321 WD40 repeat-containing 100.0 2.2E-26 4.8E-31 201.9 21.3 310 81-458 62-391 (720)
134 KOG0269 WD40 repeat-containing 100.0 1E-26 2.2E-31 208.3 19.6 280 148-453 40-335 (839)
135 KOG1445 Tumor-specific antigen 100.0 4.2E-26 9.2E-31 200.2 22.9 144 312-457 600-749 (1012)
136 KOG2445 Nuclear pore complex c 100.0 1.9E-25 4.1E-30 179.3 24.6 258 144-457 10-317 (361)
137 KOG2048 WD40 repeat protein [G 99.9 1.3E-24 2.7E-29 192.3 32.0 287 139-454 17-315 (691)
138 KOG1332 Vesicle coat complex C 99.9 1.8E-26 4E-31 179.1 17.9 244 190-456 10-284 (299)
139 KOG0264 Nucleosome remodeling 99.9 8.3E-26 1.8E-30 190.8 21.8 212 141-366 171-405 (422)
140 KOG0650 WD40 repeat nucleolar 99.9 6.4E-26 1.4E-30 197.6 19.0 319 18-413 394-732 (733)
141 KOG0269 WD40 repeat-containing 99.9 2E-25 4.2E-30 200.2 19.1 292 27-369 42-344 (839)
142 KOG1274 WD40 repeat protein [G 99.9 4.2E-24 9.1E-29 195.4 27.2 249 189-458 11-262 (933)
143 KOG2445 Nuclear pore complex c 99.9 4.2E-24 9.1E-29 171.6 23.6 273 21-417 10-319 (361)
144 KOG4378 Nuclear protein COP1 [ 99.9 7.9E-25 1.7E-29 186.7 20.5 264 150-440 37-305 (673)
145 KOG0646 WD40 repeat protein [G 99.9 6.9E-24 1.5E-28 179.7 23.6 263 160-441 51-332 (476)
146 KOG4283 Transcription-coupled 99.9 1.5E-23 3.3E-28 167.5 23.7 219 188-422 40-282 (397)
147 KOG0267 Microtubule severing p 99.9 5.9E-26 1.3E-30 202.0 10.8 242 138-408 19-260 (825)
148 KOG0302 Ribosome Assembly prot 99.9 8.3E-24 1.8E-28 174.5 21.9 210 144-366 148-379 (440)
149 KOG0307 Vesicle coat complex C 99.9 8.7E-25 1.9E-29 204.7 17.3 296 61-368 7-330 (1049)
150 KOG1273 WD40 repeat protein [G 99.9 4.7E-23 1E-27 166.2 24.7 249 142-417 60-323 (405)
151 KOG4227 WD40 repeat protein [G 99.9 1.3E-23 2.8E-28 174.4 22.1 300 139-456 48-385 (609)
152 COG2319 FOG: WD40 repeat [Gene 99.9 9.1E-21 2E-25 177.7 43.4 371 19-457 60-441 (466)
153 KOG0267 Microtubule severing p 99.9 4E-25 8.6E-30 196.8 10.9 255 160-449 5-259 (825)
154 KOG0322 G-protein beta subunit 99.9 1.9E-23 4.1E-28 164.3 18.9 293 139-457 6-322 (323)
155 KOG1034 Transcriptional repres 99.9 2.6E-23 5.7E-28 168.6 20.2 298 142-457 33-382 (385)
156 KOG1963 WD40 repeat protein [G 99.9 3.1E-21 6.7E-26 176.3 34.7 422 13-457 46-537 (792)
157 KOG1009 Chromatin assembly com 99.9 2.2E-22 4.9E-27 167.7 24.1 306 75-455 17-369 (434)
158 PRK11028 6-phosphogluconolacto 99.9 1.7E-21 3.6E-26 174.4 31.3 281 163-458 6-304 (330)
159 KOG0270 WD40 repeat-containing 99.9 1.4E-22 3.1E-27 170.8 21.3 248 151-423 177-456 (463)
160 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-22 3.6E-27 172.7 21.8 266 27-347 37-305 (673)
161 KOG1188 WD40 repeat protein [G 99.9 3.5E-22 7.7E-27 162.9 19.3 286 160-457 41-345 (376)
162 KOG0270 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 170.6 17.6 259 79-369 188-453 (463)
163 KOG2110 Uncharacterized conser 99.9 4.5E-20 9.7E-25 152.4 30.9 239 147-417 5-249 (391)
164 KOG0307 Vesicle coat complex C 99.9 5.4E-23 1.2E-27 192.8 15.5 285 152-457 11-326 (1049)
165 KOG0642 Cell-cycle nuclear pro 99.9 2.1E-22 4.6E-27 174.8 17.6 216 138-367 335-563 (577)
166 KOG1007 WD repeat protein TSSC 99.9 2.8E-21 6.1E-26 154.1 22.5 267 167-457 38-360 (370)
167 KOG4328 WD40 protein [Function 99.9 7.5E-22 1.6E-26 167.0 20.1 252 187-456 182-448 (498)
168 KOG1538 Uncharacterized conser 99.9 2.1E-21 4.5E-26 172.0 22.3 271 149-457 14-292 (1081)
169 KOG0302 Ribosome Assembly prot 99.9 1.7E-21 3.8E-26 160.9 19.5 249 77-358 159-432 (440)
170 KOG1538 Uncharacterized conser 99.9 1.8E-21 3.9E-26 172.4 19.5 270 113-416 14-293 (1081)
171 KOG2919 Guanine nucleotide-bin 99.9 1.2E-20 2.6E-25 152.9 21.1 281 27-356 52-361 (406)
172 KOG0321 WD40 repeat-containing 99.9 7.8E-21 1.7E-25 167.4 21.5 250 196-458 54-347 (720)
173 KOG1240 Protein kinase contain 99.9 3.7E-20 8E-25 174.7 27.2 309 135-456 1036-1431(1431)
174 KOG1963 WD40 repeat protein [G 99.9 5.5E-19 1.2E-23 161.8 33.7 415 20-457 12-486 (792)
175 KOG4227 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 156.3 21.4 298 18-365 50-387 (609)
176 KOG4497 Uncharacterized conser 99.9 5.4E-20 1.2E-24 149.6 23.2 333 30-450 14-424 (447)
177 PRK11028 6-phosphogluconolacto 99.9 1E-18 2.2E-23 156.4 32.6 251 147-417 34-305 (330)
178 KOG1517 Guanine nucleotide bin 99.9 1E-19 2.2E-24 169.3 26.0 294 145-457 1062-1380(1387)
179 KOG1034 Transcriptional repres 99.9 1.5E-20 3.2E-25 152.7 18.0 249 146-416 88-383 (385)
180 COG2319 FOG: WD40 repeat [Gene 99.9 2.8E-18 6.1E-23 160.8 36.2 289 142-458 60-359 (466)
181 KOG4497 Uncharacterized conser 99.9 3.1E-20 6.7E-25 151.0 18.6 310 118-458 15-391 (447)
182 KOG1587 Cytoplasmic dynein int 99.9 6.3E-19 1.4E-23 161.0 28.7 267 169-458 222-516 (555)
183 KOG1007 WD repeat protein TSSC 99.9 2.3E-19 5E-24 143.3 20.7 260 141-417 57-362 (370)
184 KOG0322 G-protein beta subunit 99.9 2.2E-20 4.8E-25 147.2 14.7 300 17-364 7-322 (323)
185 KOG0290 Conserved WD40 repeat- 99.9 3.6E-19 7.8E-24 142.4 21.3 248 190-458 43-318 (364)
186 KOG0771 Prolactin regulatory e 99.9 4.4E-19 9.5E-24 149.3 22.9 201 151-366 148-355 (398)
187 KOG1334 WD40 repeat protein [G 99.8 3.8E-20 8.3E-25 158.1 15.9 308 136-457 131-465 (559)
188 KOG1009 Chromatin assembly com 99.8 4.7E-19 1E-23 148.1 22.0 316 24-368 13-375 (434)
189 KOG0303 Actin-binding protein 99.8 2.2E-19 4.7E-24 149.5 19.7 211 142-370 76-299 (472)
190 KOG0644 Uncharacterized conser 99.8 1.3E-20 2.8E-25 171.0 13.5 291 10-367 176-470 (1113)
191 KOG0290 Conserved WD40 repeat- 99.8 4.9E-19 1.1E-23 141.6 20.3 242 145-407 94-357 (364)
192 KOG0642 Cell-cycle nuclear pro 99.8 5.7E-20 1.2E-24 159.9 15.3 265 141-458 288-561 (577)
193 KOG0649 WD40 repeat protein [G 99.8 1.4E-18 3E-23 135.5 20.7 255 148-458 11-274 (325)
194 KOG2111 Uncharacterized conser 99.8 5.4E-17 1.2E-21 131.8 29.9 240 150-418 8-258 (346)
195 KOG1524 WD40 repeat-containing 99.8 7.7E-19 1.7E-23 152.0 20.1 274 17-413 7-283 (737)
196 KOG2139 WD40 repeat protein [G 99.8 1.2E-17 2.6E-22 137.8 25.7 292 147-457 98-430 (445)
197 KOG1310 WD40 repeat protein [G 99.8 7.3E-19 1.6E-23 152.6 18.5 214 138-365 41-303 (758)
198 KOG1524 WD40 repeat-containing 99.8 2E-18 4.4E-23 149.4 20.9 264 145-454 12-282 (737)
199 KOG1517 Guanine nucleotide bin 99.8 2.9E-18 6.4E-23 159.8 23.1 302 27-367 1067-1383(1387)
200 KOG1523 Actin-related protein 99.8 9.6E-18 2.1E-22 136.2 22.6 212 143-368 6-239 (361)
201 KOG0649 WD40 repeat protein [G 99.8 2.6E-17 5.6E-22 128.6 23.5 236 82-366 21-275 (325)
202 KOG1445 Tumor-specific antigen 99.8 1E-18 2.2E-23 154.3 16.9 241 158-457 590-843 (1012)
203 KOG1334 WD40 repeat protein [G 99.8 9.4E-19 2E-23 149.7 16.1 306 13-367 131-468 (559)
204 KOG0303 Actin-binding protein 99.8 3.5E-18 7.5E-23 142.4 19.0 228 187-439 77-320 (472)
205 KOG2110 Uncharacterized conser 99.8 1.4E-16 3E-21 132.1 27.7 247 149-417 48-331 (391)
206 KOG0771 Prolactin regulatory e 99.8 2.2E-17 4.9E-22 139.1 23.1 198 240-457 148-353 (398)
207 KOG1587 Cytoplasmic dynein int 99.8 2.3E-17 4.9E-22 150.9 24.5 252 146-418 241-518 (555)
208 KOG1240 Protein kinase contain 99.8 2.8E-17 6.1E-22 155.6 24.3 361 13-414 1037-1431(1431)
209 KOG1310 WD40 repeat protein [G 99.8 1.4E-17 3E-22 144.8 19.6 175 17-221 43-230 (758)
210 KOG1188 WD40 repeat protein [G 99.8 2.9E-17 6.4E-22 134.5 20.3 197 205-422 41-248 (376)
211 PRK01742 tolB translocation pr 99.8 4.7E-17 1E-21 150.1 22.5 235 168-439 183-426 (429)
212 KOG1272 WD40-repeat-containing 99.8 2.5E-18 5.4E-23 146.3 11.5 265 149-449 131-400 (545)
213 KOG0644 Uncharacterized conser 99.8 9.8E-19 2.1E-23 159.0 9.5 249 138-418 181-470 (1113)
214 KOG1523 Actin-related protein 99.8 5.7E-16 1.2E-20 126.0 22.0 242 191-449 10-269 (361)
215 PF02239 Cytochrom_D1: Cytochr 99.7 2.9E-15 6.4E-20 133.5 27.8 291 139-457 28-346 (369)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 1.7E-16 3.7E-21 137.7 19.0 200 157-396 183-384 (636)
217 COG2706 3-carboxymuconate cycl 99.7 2.6E-14 5.7E-19 119.1 31.2 278 168-458 15-321 (346)
218 PRK01742 tolB translocation pr 99.7 3.2E-16 6.9E-21 144.6 21.6 214 213-457 183-400 (429)
219 PF10282 Lactonase: Lactonase, 99.7 3.9E-14 8.5E-19 126.8 33.6 277 169-458 13-322 (345)
220 KOG2321 WD40 repeat protein [G 99.7 3E-15 6.4E-20 131.2 23.8 278 145-455 49-340 (703)
221 KOG1354 Serine/threonine prote 99.7 2.3E-15 5E-20 123.7 21.5 360 23-455 24-431 (433)
222 PRK03629 tolB translocation pr 99.7 9.7E-15 2.1E-19 134.4 28.3 238 169-439 179-428 (429)
223 PF02239 Cytochrom_D1: Cytochr 99.7 1E-14 2.2E-19 130.0 27.1 322 39-424 8-355 (369)
224 KOG2111 Uncharacterized conser 99.7 1.3E-14 2.9E-19 118.1 24.5 241 193-457 7-255 (346)
225 KOG3881 Uncharacterized conser 99.7 6.9E-15 1.5E-19 123.0 22.6 210 142-368 100-323 (412)
226 KOG2139 WD40 repeat protein [G 99.7 3.6E-15 7.8E-20 123.4 20.2 232 191-448 98-365 (445)
227 KOG1272 WD40-repeat-containing 99.7 1.3E-16 2.8E-21 136.0 10.8 230 193-456 131-360 (545)
228 PRK03629 tolB translocation pr 99.7 3.2E-14 7E-19 130.9 26.6 214 215-457 180-405 (429)
229 KOG1409 Uncharacterized conser 99.7 2.7E-14 5.9E-19 117.5 21.9 249 138-416 15-270 (404)
230 KOG2394 WD40 protein DMR-N9 [G 99.7 5.1E-15 1.1E-19 128.7 17.8 251 150-438 126-384 (636)
231 PRK04922 tolB translocation pr 99.7 3.9E-14 8.4E-19 131.1 25.0 236 169-438 184-432 (433)
232 KOG3881 Uncharacterized conser 99.7 4.6E-14 9.9E-19 118.2 22.2 268 146-439 54-342 (412)
233 PRK05137 tolB translocation pr 99.7 1.2E-13 2.6E-18 128.0 27.4 237 169-439 182-433 (435)
234 PRK05137 tolB translocation pr 99.7 9.1E-14 2E-18 128.8 26.2 215 214-457 182-411 (435)
235 PF08662 eIF2A: Eukaryotic tra 99.7 1.3E-14 2.7E-19 117.5 17.9 148 297-458 9-179 (194)
236 PF08662 eIF2A: Eukaryotic tra 99.6 5E-14 1.1E-18 114.1 20.0 160 240-418 9-181 (194)
237 PRK02889 tolB translocation pr 99.6 1.3E-13 2.8E-18 127.2 24.3 237 169-439 176-425 (427)
238 KOG2315 Predicted translation 99.6 4.3E-13 9.4E-18 117.7 24.4 270 148-457 35-389 (566)
239 KOG2321 WD40 repeat protein [G 99.6 4.3E-13 9.3E-18 117.9 24.3 236 150-418 97-345 (703)
240 PRK02889 tolB translocation pr 99.6 2.6E-13 5.6E-18 125.1 24.2 209 214-450 176-392 (427)
241 COG5354 Uncharacterized protei 99.6 2.8E-12 6.1E-17 111.3 28.4 373 20-449 28-420 (561)
242 KOG0974 WD-repeat protein WDR6 99.6 6.1E-13 1.3E-17 125.0 26.3 202 25-280 88-289 (967)
243 PF10282 Lactonase: Lactonase, 99.6 6.6E-12 1.4E-16 112.5 32.3 250 148-417 37-323 (345)
244 COG2706 3-carboxymuconate cycl 99.6 1E-11 2.2E-16 103.8 30.5 275 145-437 37-345 (346)
245 PRK04922 tolB translocation pr 99.6 2.3E-13 4.9E-18 126.0 23.3 205 141-366 197-412 (433)
246 KOG1409 Uncharacterized conser 99.6 2.7E-13 5.8E-18 111.8 20.7 309 11-417 11-395 (404)
247 KOG2314 Translation initiation 99.6 1.8E-12 4E-17 113.6 26.0 308 117-449 216-558 (698)
248 KOG0280 Uncharacterized conser 99.6 9.9E-13 2.1E-17 106.2 22.4 266 168-456 45-331 (339)
249 KOG2315 Predicted translation 99.6 5.2E-12 1.1E-16 111.0 28.0 264 151-439 129-411 (566)
250 KOG4547 WD40 repeat-containing 99.6 2.6E-12 5.7E-17 113.6 24.7 194 156-366 2-221 (541)
251 KOG1354 Serine/threonine prote 99.6 1.2E-12 2.6E-17 108.0 20.7 283 147-457 25-358 (433)
252 TIGR02800 propeller_TolB tol-p 99.6 3.3E-12 7.1E-17 118.7 25.7 235 169-436 170-416 (417)
253 KOG2314 Translation initiation 99.5 1.7E-11 3.8E-16 107.6 26.1 278 150-458 213-525 (698)
254 PRK00178 tolB translocation pr 99.5 1.7E-11 3.7E-16 114.0 28.0 237 170-439 180-428 (430)
255 PRK04792 tolB translocation pr 99.5 1.1E-11 2.3E-16 114.8 26.3 237 170-439 199-447 (448)
256 KOG0974 WD-repeat protein WDR6 99.5 8.8E-13 1.9E-17 123.9 18.9 275 146-457 6-287 (967)
257 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.1E-10 4.6E-15 100.0 32.3 266 169-457 27-329 (352)
258 KOG4190 Uncharacterized conser 99.5 1.3E-13 2.7E-18 120.9 12.1 288 139-454 727-1032(1034)
259 TIGR02800 propeller_TolB tol-p 99.5 8.8E-12 1.9E-16 115.9 25.1 208 214-450 170-386 (417)
260 PRK00178 tolB translocation pr 99.5 1.6E-11 3.6E-16 114.1 26.2 214 215-457 180-405 (430)
261 COG5354 Uncharacterized protei 99.5 1.1E-11 2.5E-16 107.7 22.4 277 146-457 31-347 (561)
262 PRK01029 tolB translocation pr 99.5 2.3E-11 5E-16 111.7 26.1 218 214-457 165-402 (428)
263 KOG2041 WD40 repeat protein [G 99.5 1.2E-11 2.5E-16 112.0 23.2 282 139-453 63-403 (1189)
264 PRK01029 tolB translocation pr 99.5 2E-11 4.3E-16 112.1 25.4 245 169-440 165-426 (428)
265 PF04762 IKI3: IKI3 family; I 99.5 4.8E-10 1E-14 111.3 36.0 358 25-418 121-566 (928)
266 KOG1912 WD40 repeat protein [G 99.5 1.3E-11 2.9E-16 112.6 22.9 104 307-417 439-552 (1062)
267 TIGR02658 TTQ_MADH_Hv methylam 99.5 5.6E-10 1.2E-14 97.4 30.4 240 155-424 53-338 (352)
268 KOG4190 Uncharacterized conser 99.5 3.7E-13 7.9E-18 118.0 10.7 249 139-412 776-1032(1034)
269 KOG0309 Conserved WD40 repeat- 99.5 7.7E-13 1.7E-17 119.8 13.0 289 147-458 24-339 (1081)
270 PRK04792 tolB translocation pr 99.5 6E-11 1.3E-15 109.9 25.8 214 215-457 199-424 (448)
271 KOG2041 WD40 repeat protein [G 99.5 1.8E-11 3.9E-16 110.8 21.2 280 147-455 14-334 (1189)
272 COG4946 Uncharacterized protei 99.4 1.1E-09 2.3E-14 94.9 29.7 175 155-354 327-507 (668)
273 PLN02919 haloacid dehalogenase 99.4 4.9E-10 1.1E-14 113.4 32.3 248 195-458 571-888 (1057)
274 KOG1064 RAVE (regulator of V-A 99.4 1.2E-12 2.7E-17 129.3 12.6 199 143-369 2204-2402(2439)
275 COG4946 Uncharacterized protei 99.4 1.3E-08 2.8E-13 88.4 34.6 215 202-446 276-506 (668)
276 KOG4547 WD40 repeat-containing 99.4 1.7E-10 3.8E-15 102.3 23.7 201 201-417 2-221 (541)
277 PF04762 IKI3: IKI3 family; I 99.4 2.9E-08 6.3E-13 98.9 41.0 411 23-456 74-562 (928)
278 KOG1064 RAVE (regulator of V-A 99.3 1.6E-11 3.6E-16 121.6 13.1 215 205-458 2181-2398(2439)
279 TIGR03300 assembly_YfgL outer 99.3 5.4E-09 1.2E-13 95.6 28.6 262 158-455 104-376 (377)
280 PLN02919 haloacid dehalogenase 99.3 7.2E-09 1.6E-13 105.1 31.7 254 151-420 571-892 (1057)
281 PF08450 SGL: SMP-30/Gluconola 99.3 2.4E-08 5.3E-13 85.3 29.8 224 195-444 3-241 (246)
282 KOG4532 WD40-like repeat conta 99.3 2.1E-09 4.5E-14 86.2 20.6 227 202-449 82-323 (344)
283 KOG4532 WD40-like repeat conta 99.2 4.6E-09 1E-13 84.3 20.7 232 159-407 84-323 (344)
284 KOG0280 Uncharacterized conser 99.2 2.1E-09 4.7E-14 87.3 18.9 164 271-441 95-266 (339)
285 COG5170 CDC55 Serine/threonine 99.2 4.7E-10 1E-14 91.8 13.9 287 23-365 25-367 (460)
286 TIGR03300 assembly_YfgL outer 99.2 1.7E-08 3.6E-13 92.4 26.0 259 159-457 65-337 (377)
287 PRK04043 tolB translocation pr 99.2 3.6E-08 7.8E-13 90.1 27.8 203 214-448 169-387 (419)
288 KOG1912 WD40 repeat protein [G 99.2 9.8E-09 2.1E-13 94.4 23.4 370 23-445 14-483 (1062)
289 PF07433 DUF1513: Protein of u 99.2 7.5E-08 1.6E-12 81.2 26.9 238 194-448 7-276 (305)
290 COG5170 CDC55 Serine/threonine 99.2 1.1E-09 2.3E-14 89.7 15.1 288 146-456 25-365 (460)
291 PF15492 Nbas_N: Neuroblastoma 99.2 1.9E-08 4.1E-13 82.1 21.9 198 242-458 3-259 (282)
292 KOG4714 Nucleoporin [Nuclear s 99.2 1.4E-09 3.1E-14 86.7 14.2 151 204-366 101-255 (319)
293 PRK04043 tolB translocation pr 99.2 8.4E-08 1.8E-12 87.8 27.6 196 193-418 189-402 (419)
294 KOG3914 WD repeat protein WDR4 99.1 1.5E-09 3.3E-14 92.0 13.4 150 296-457 65-222 (390)
295 KOG3914 WD repeat protein WDR4 99.1 1.9E-09 4.2E-14 91.4 13.0 152 202-370 72-228 (390)
296 KOG0882 Cyclophilin-related pe 99.1 1.2E-08 2.5E-13 88.0 17.4 288 78-413 15-369 (558)
297 KOG0882 Cyclophilin-related pe 99.1 3.8E-09 8.1E-14 90.9 14.0 258 145-418 7-307 (558)
298 PF13360 PQQ_2: PQQ-like domai 99.1 2.5E-07 5.5E-12 78.9 24.7 221 168-421 2-235 (238)
299 PF15492 Nbas_N: Neuroblastoma 99.0 5.4E-07 1.2E-11 73.8 24.0 237 153-424 3-267 (282)
300 PF08450 SGL: SMP-30/Gluconola 99.0 3.2E-06 6.9E-11 72.3 30.2 228 152-405 4-244 (246)
301 KOG0309 Conserved WD40 repeat- 99.0 6.3E-09 1.4E-13 95.1 13.2 282 25-366 25-340 (1081)
302 PF00400 WD40: WD domain, G-be 99.0 1.9E-09 4.1E-14 62.2 6.1 38 138-175 2-39 (39)
303 PRK11138 outer membrane biogen 99.0 1.1E-06 2.3E-11 80.9 27.1 262 159-457 120-393 (394)
304 PF07433 DUF1513: Protein of u 99.0 3.7E-06 7.9E-11 71.2 27.4 245 150-412 7-281 (305)
305 PF13360 PQQ_2: PQQ-like domai 98.9 1.2E-06 2.6E-11 74.7 23.2 223 213-458 2-230 (238)
306 PRK11138 outer membrane biogen 98.9 1.2E-06 2.5E-11 80.6 23.8 261 159-457 69-352 (394)
307 KOG1275 PAB-dependent poly(A) 98.9 9.2E-08 2E-12 89.8 15.8 169 272-456 158-340 (1118)
308 PF00400 WD40: WD domain, G-be 98.9 8.4E-09 1.8E-13 59.4 5.7 39 325-363 1-39 (39)
309 KOG1832 HIV-1 Vpr-binding prot 98.9 2.2E-09 4.8E-14 100.0 4.9 223 138-404 1092-1319(1516)
310 KOG4714 Nucleoporin [Nuclear s 98.8 6.4E-08 1.4E-12 77.5 11.2 145 304-457 100-253 (319)
311 PRK02888 nitrous-oxide reducta 98.8 5E-06 1.1E-10 77.2 23.8 243 158-458 140-404 (635)
312 KOG3617 WD40 and TPR repeat-co 98.8 5.8E-07 1.3E-11 84.0 17.7 273 152-447 20-374 (1416)
313 KOG1920 IkappaB kinase complex 98.8 4.5E-06 9.7E-11 81.5 23.3 240 148-418 69-324 (1265)
314 KOG2114 Vacuolar assembly/sort 98.7 6.6E-06 1.4E-10 77.4 22.2 212 202-432 33-260 (933)
315 KOG1645 RING-finger-containing 98.7 4.8E-06 1E-10 71.3 19.1 250 188-457 190-460 (463)
316 KOG2695 WD40 repeat protein [G 98.7 1.1E-07 2.3E-12 79.4 8.7 149 163-334 228-387 (425)
317 KOG3617 WD40 and TPR repeat-co 98.7 7.1E-07 1.5E-11 83.4 14.9 115 239-366 18-132 (1416)
318 KOG1008 Uncharacterized conser 98.7 3.1E-08 6.7E-13 89.4 5.7 202 146-366 55-276 (783)
319 KOG1008 Uncharacterized conser 98.7 1.7E-08 3.6E-13 91.1 3.8 233 193-440 58-315 (783)
320 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.8E-12 78.2 7.9 144 146-302 251-401 (425)
321 KOG2114 Vacuolar assembly/sort 98.6 1E-05 2.3E-10 76.1 20.1 182 139-337 56-258 (933)
322 PF06433 Me-amine-dh_H: Methyl 98.6 8.6E-05 1.9E-09 63.9 24.1 266 169-457 17-319 (342)
323 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00019 4.1E-09 58.3 24.5 261 158-458 62-351 (354)
324 PF11768 DUF3312: Protein of u 98.6 0.00011 2.3E-09 66.9 25.5 97 333-440 257-369 (545)
325 cd00216 PQQ_DH Dehydrogenases 98.6 0.00014 3E-09 68.8 27.7 205 159-371 61-325 (488)
326 KOG2066 Vacuolar assembly/sort 98.6 1.2E-05 2.6E-10 75.2 19.7 185 147-366 39-234 (846)
327 PF00930 DPPIV_N: Dipeptidyl p 98.6 8.8E-05 1.9E-09 67.0 25.3 277 156-445 1-344 (353)
328 KOG1275 PAB-dependent poly(A) 98.6 2E-06 4.3E-11 81.2 14.7 192 158-365 146-342 (1118)
329 PRK02888 nitrous-oxide reducta 98.6 5.2E-06 1.1E-10 77.1 17.1 185 212-417 213-405 (635)
330 KOG1920 IkappaB kinase complex 98.5 8.3E-05 1.8E-09 73.0 25.2 235 192-457 69-321 (1265)
331 KOG1645 RING-finger-containing 98.5 1.4E-06 3E-11 74.5 11.3 168 273-445 175-348 (463)
332 KOG3621 WD40 repeat-containing 98.5 4.2E-05 9.1E-10 70.6 21.4 167 23-225 32-200 (726)
333 KOG2066 Vacuolar assembly/sort 98.5 1.4E-05 3.1E-10 74.7 18.6 186 192-416 40-233 (846)
334 PF06977 SdiA-regulated: SdiA- 98.5 0.00026 5.7E-09 59.3 24.5 205 191-413 21-247 (248)
335 PF06977 SdiA-regulated: SdiA- 98.5 7.8E-05 1.7E-09 62.4 21.4 204 237-455 22-247 (248)
336 PF11768 DUF3312: Protein of u 98.5 1.1E-05 2.4E-10 73.1 16.2 92 272-366 237-330 (545)
337 PF14583 Pectate_lyase22: Olig 98.5 0.00033 7.1E-09 61.6 24.7 288 152-456 40-379 (386)
338 COG0823 TolB Periplasmic compo 98.5 1.3E-05 2.8E-10 73.1 16.7 185 237-445 193-386 (425)
339 cd00216 PQQ_DH Dehydrogenases 98.4 0.00017 3.7E-09 68.1 24.6 257 160-425 111-433 (488)
340 PF04053 Coatomer_WDAD: Coatom 98.4 4.6E-05 1E-09 69.8 19.0 227 140-416 25-262 (443)
341 PF08596 Lgl_C: Lethal giant l 98.4 0.00015 3.3E-09 65.5 22.1 223 139-365 78-335 (395)
342 COG3391 Uncharacterized conser 98.4 0.0012 2.6E-08 60.2 27.7 239 195-456 34-281 (381)
343 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00056 1.2E-08 61.9 24.9 228 151-406 104-347 (353)
344 COG3386 Gluconolactonase [Carb 98.3 0.00031 6.8E-09 61.1 21.2 229 198-449 31-277 (307)
345 PF04053 Coatomer_WDAD: Coatom 98.3 0.00024 5.3E-09 65.2 21.1 228 192-458 33-262 (443)
346 KOG1832 HIV-1 Vpr-binding prot 98.3 1.6E-06 3.4E-11 81.7 6.9 143 290-444 1098-1246(1516)
347 COG3391 Uncharacterized conser 98.3 0.0027 5.8E-08 58.0 27.6 245 149-421 32-288 (381)
348 PF05694 SBP56: 56kDa selenium 98.3 0.00057 1.2E-08 60.7 21.8 245 158-406 86-393 (461)
349 PF08596 Lgl_C: Lethal giant l 98.2 0.00048 1E-08 62.4 21.2 239 193-458 3-290 (395)
350 PF03178 CPSF_A: CPSF A subuni 98.2 0.00036 7.7E-09 62.3 19.7 224 215-454 3-261 (321)
351 PF06433 Me-amine-dh_H: Methyl 98.2 0.00095 2.1E-08 57.7 20.6 274 48-333 18-330 (342)
352 COG0823 TolB Periplasmic compo 98.1 0.0014 3.1E-08 60.0 22.3 189 192-407 193-390 (425)
353 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0068 1.5E-07 55.8 28.4 198 170-400 62-273 (410)
354 PF03178 CPSF_A: CPSF A subuni 98.1 0.00021 4.5E-09 63.8 16.4 174 271-457 2-201 (321)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0094 2E-07 56.8 28.0 162 160-328 121-338 (527)
356 KOG3621 WD40 repeat-containing 98.1 4.1E-05 9E-10 70.7 10.9 114 336-457 34-153 (726)
357 COG3490 Uncharacterized protei 98.1 0.0034 7.4E-08 52.1 20.6 280 149-455 36-345 (366)
358 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0033 7.2E-08 57.8 22.9 173 272-457 62-245 (410)
359 PF08553 VID27: VID27 cytoplas 98.0 0.00069 1.5E-08 65.9 18.5 153 202-365 491-647 (794)
360 KOG1897 Damage-specific DNA bi 98.0 0.019 4.1E-07 56.1 31.8 274 149-454 585-894 (1096)
361 PF00780 CNH: CNH domain; Int 98.0 0.01 2.2E-07 51.7 24.1 223 158-421 6-260 (275)
362 PF05694 SBP56: 56kDa selenium 97.9 0.0064 1.4E-07 54.3 21.6 237 203-446 86-391 (461)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.021 4.5E-07 54.5 30.0 200 159-370 69-338 (527)
364 KOG4499 Ca2+-binding protein R 97.9 0.0034 7.4E-08 50.5 17.9 214 202-439 25-264 (310)
365 smart00320 WD40 WD40 repeats. 97.9 4E-05 8.6E-10 43.4 5.4 37 139-175 4-40 (40)
366 PF02897 Peptidase_S9_N: Proly 97.9 0.022 4.7E-07 53.1 26.4 234 195-441 127-383 (414)
367 PF08553 VID27: VID27 cytoplas 97.9 0.00061 1.3E-08 66.2 15.6 139 312-456 501-645 (794)
368 PRK13616 lipoprotein LpqB; Pro 97.9 0.0012 2.6E-08 63.2 17.6 157 294-457 350-524 (591)
369 COG3386 Gluconolactonase [Carb 97.8 0.018 3.9E-07 50.3 24.7 231 154-406 31-275 (307)
370 smart00320 WD40 WD40 repeats. 97.8 9.6E-05 2.1E-09 41.7 5.5 39 325-363 2-40 (40)
371 PRK13616 lipoprotein LpqB; Pro 97.8 0.0078 1.7E-07 57.8 20.8 194 238-453 351-563 (591)
372 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.6E-07 47.5 23.9 144 202-364 21-164 (354)
373 PF14583 Pectate_lyase22: Olig 97.7 0.027 5.9E-07 49.9 22.5 225 198-449 42-303 (386)
374 PF02897 Peptidase_S9_N: Proly 97.7 0.039 8.5E-07 51.4 26.5 247 150-419 126-407 (414)
375 PF14870 PSII_BNR: Photosynthe 97.7 0.028 6.1E-07 48.8 31.3 277 147-455 16-301 (302)
376 PF00780 CNH: CNH domain; Int 97.7 0.031 6.7E-07 48.7 24.7 228 202-458 5-255 (275)
377 KOG4640 Anaphase-promoting com 97.7 0.00024 5.2E-09 65.1 8.9 77 294-371 21-98 (665)
378 COG3490 Uncharacterized protei 97.7 0.025 5.5E-07 47.2 22.0 249 152-416 72-348 (366)
379 COG3204 Uncharacterized protei 97.7 0.015 3.3E-07 48.8 18.1 166 291-456 83-261 (316)
380 KOG4441 Proteins containing BT 97.6 0.019 4.2E-07 55.1 21.8 193 158-367 284-501 (571)
381 KOG1897 Damage-specific DNA bi 97.6 0.081 1.8E-06 52.0 33.5 288 147-455 629-939 (1096)
382 KOG4640 Anaphase-promoting com 97.6 0.00036 7.7E-09 64.0 8.7 94 335-438 20-115 (665)
383 PF05096 Glu_cyclase_2: Glutam 97.6 0.036 7.7E-07 46.5 20.9 192 193-407 46-251 (264)
384 PHA02713 hypothetical protein; 97.6 0.023 5.1E-07 54.7 21.2 224 170-419 273-536 (557)
385 COG3204 Uncharacterized protei 97.5 0.04 8.6E-07 46.4 20.3 173 143-331 81-270 (316)
386 KOG2079 Vacuolar assembly/sort 97.5 0.0011 2.4E-08 64.8 11.6 92 271-365 109-203 (1206)
387 KOG2395 Protein involved in va 97.5 0.0022 4.7E-08 57.8 12.6 149 206-365 348-500 (644)
388 PF10647 Gmad1: Lipoprotein Lp 97.5 0.032 6.9E-07 47.7 19.1 146 295-449 25-186 (253)
389 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.7E-07 41.0 13.9 100 296-411 2-109 (111)
390 KOG2444 WD40 repeat protein [G 97.5 0.0002 4.4E-09 57.2 4.8 141 308-458 33-177 (238)
391 KOG2395 Protein involved in va 97.4 0.0049 1.1E-07 55.7 13.1 136 307-448 348-491 (644)
392 PF05096 Glu_cyclase_2: Glutam 97.4 0.062 1.4E-06 45.1 21.3 192 234-446 42-249 (264)
393 PF07995 GSDH: Glucose / Sorbo 97.4 0.1 2.2E-06 46.7 25.8 253 149-411 3-330 (331)
394 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.01 2.2E-07 42.1 11.4 100 338-453 2-109 (111)
395 KOG4441 Proteins containing BT 97.3 0.069 1.5E-06 51.5 20.6 226 202-451 283-534 (571)
396 PHA02713 hypothetical protein; 97.1 0.038 8.3E-07 53.3 17.0 201 158-367 303-535 (557)
397 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0018 3.9E-08 38.2 4.9 31 428-458 11-41 (47)
398 KOG2079 Vacuolar assembly/sort 97.1 0.03 6.5E-07 55.3 15.6 103 204-322 99-202 (1206)
399 PF10647 Gmad1: Lipoprotein Lp 97.0 0.2 4.3E-06 42.9 22.6 154 238-408 25-187 (253)
400 COG5276 Uncharacterized conser 97.0 0.19 4E-06 42.5 26.7 277 148-457 87-368 (370)
401 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.29 6.4E-06 44.7 27.2 148 159-322 37-203 (418)
402 KOG2444 WD40 repeat protein [G 96.9 0.003 6.5E-08 50.7 6.4 143 206-367 32-179 (238)
403 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0046 9.9E-08 36.5 5.6 31 147-177 11-41 (47)
404 PHA03098 kelch-like protein; P 96.8 0.22 4.8E-06 48.2 19.8 194 158-367 294-513 (534)
405 TIGR02604 Piru_Ver_Nterm putat 96.7 0.14 3.1E-06 46.6 16.7 148 295-447 15-202 (367)
406 PHA03098 kelch-like protein; P 96.7 0.23 4.9E-06 48.1 19.1 193 203-418 294-513 (534)
407 TIGR03074 PQQ_membr_DH membran 96.6 0.88 1.9E-05 45.5 22.4 210 159-371 194-483 (764)
408 TIGR03074 PQQ_membr_DH membran 96.6 0.9 1.9E-05 45.5 24.9 218 204-423 194-484 (764)
409 KOG4499 Ca2+-binding protein R 96.6 0.2 4.4E-06 40.7 14.2 47 299-345 217-263 (310)
410 PF14870 PSII_BNR: Photosynthe 96.4 0.56 1.2E-05 40.9 26.7 228 190-449 15-253 (302)
411 COG4257 Vgb Streptogramin lyas 96.4 0.49 1.1E-05 39.7 21.2 224 192-441 62-288 (353)
412 PF08728 CRT10: CRT10; InterP 96.3 0.12 2.5E-06 50.1 13.4 152 305-457 49-245 (717)
413 PHA02790 Kelch-like protein; P 96.2 0.92 2E-05 43.1 19.2 145 203-367 271-425 (480)
414 PHA02790 Kelch-like protein; P 96.2 0.79 1.7E-05 43.6 18.6 188 158-367 271-472 (480)
415 PF15390 DUF4613: Domain of un 96.2 1.1 2.5E-05 41.9 24.8 117 148-280 57-187 (671)
416 PF12234 Rav1p_C: RAVE protein 96.2 0.2 4.4E-06 48.0 14.2 124 139-278 21-155 (631)
417 PF15390 DUF4613: Domain of un 96.1 0.3 6.5E-06 45.5 14.5 151 295-456 21-184 (671)
418 PF14727 PHTB1_N: PTHB1 N-term 96.1 1.1 2.4E-05 41.1 26.4 184 160-367 146-362 (418)
419 PRK13684 Ycf48-like protein; P 96.0 1.1 2.5E-05 40.1 30.2 152 293-456 172-329 (334)
420 TIGR03606 non_repeat_PQQ dehyd 95.9 0.91 2E-05 42.1 16.8 53 295-347 31-90 (454)
421 PF10168 Nup88: Nuclear pore c 95.9 0.3 6.6E-06 48.2 14.4 72 386-458 84-179 (717)
422 TIGR03118 PEPCTERM_chp_1 conse 95.8 1.1 2.3E-05 38.6 20.0 206 150-369 25-283 (336)
423 KOG3630 Nuclear pore complex, 95.8 0.084 1.8E-06 52.7 10.2 142 295-445 102-260 (1405)
424 PF13449 Phytase-like: Esteras 95.8 1.3 2.9E-05 39.5 17.6 162 294-457 20-248 (326)
425 KOG2247 WD40 repeat-containing 95.8 0.0015 3.2E-08 58.4 -1.4 148 194-361 37-184 (615)
426 KOG2280 Vacuolar assembly/sort 95.8 1 2.2E-05 43.4 16.6 181 168-368 63-249 (829)
427 PF14655 RAB3GAP2_N: Rab3 GTPa 95.7 1.6 3.5E-05 40.0 29.0 91 152-245 6-117 (415)
428 PF12234 Rav1p_C: RAVE protein 95.7 0.42 9.1E-06 46.0 14.0 118 295-415 31-155 (631)
429 COG5167 VID27 Protein involved 95.5 0.35 7.5E-06 44.2 12.1 152 202-365 477-632 (776)
430 COG3823 Glutamine cyclotransfe 95.4 0.61 1.3E-05 37.4 11.7 172 158-353 55-247 (262)
431 KOG3616 Selective LIM binding 95.2 3.2 6.9E-05 40.3 17.5 69 147-221 14-82 (1636)
432 COG5276 Uncharacterized conser 95.0 2 4.3E-05 36.6 25.8 234 150-415 131-368 (370)
433 PF10168 Nup88: Nuclear pore c 94.8 1.9 4E-05 42.9 16.0 86 335-421 84-184 (717)
434 KOG2247 WD40 repeat-containing 94.8 0.0058 1.2E-07 54.8 -0.8 142 297-450 38-180 (615)
435 PF10313 DUF2415: Uncharacteri 94.8 0.15 3.2E-06 29.1 5.1 32 193-224 2-35 (43)
436 KOG3630 Nuclear pore complex, 94.8 0.24 5.2E-06 49.8 9.7 161 297-457 45-227 (1405)
437 PF03022 MRJP: Major royal jel 94.7 2.7 5.8E-05 36.7 17.3 174 272-446 35-253 (287)
438 TIGR02604 Piru_Ver_Nterm putat 94.7 3.4 7.5E-05 37.7 24.9 159 148-312 14-202 (367)
439 PF07569 Hira: TUP1-like enhan 94.5 0.23 5E-06 41.2 8.0 74 343-417 18-96 (219)
440 PF08728 CRT10: CRT10; InterP 94.5 5.5 0.00012 39.2 17.8 114 295-415 102-245 (717)
441 PF10313 DUF2415: Uncharacteri 94.4 0.27 5.9E-06 28.1 5.5 30 295-324 2-34 (43)
442 PF14781 BBS2_N: Ciliary BBSom 94.4 1.5 3.3E-05 32.5 13.8 118 151-286 2-132 (136)
443 COG5167 VID27 Protein involved 94.1 2 4.4E-05 39.5 13.2 134 304-449 478-624 (776)
444 KOG1900 Nuclear pore complex, 94.1 0.81 1.7E-05 47.0 11.8 144 312-458 96-272 (1311)
445 KOG1898 Splicing factor 3b, su 94.0 8 0.00017 39.3 28.3 172 272-456 854-1046(1205)
446 PF07569 Hira: TUP1-like enhan 94.0 0.47 1E-05 39.4 8.7 66 392-458 16-95 (219)
447 TIGR03118 PEPCTERM_chp_1 conse 93.9 3.8 8.2E-05 35.3 22.9 182 161-345 102-307 (336)
448 PF03022 MRJP: Major royal jel 93.7 4.5 9.8E-05 35.4 17.2 175 215-405 35-254 (287)
449 PRK10115 protease 2; Provision 93.7 8.6 0.00019 38.5 31.2 197 149-365 128-344 (686)
450 KOG2377 Uncharacterized conser 93.6 2.8 6.1E-05 38.1 13.0 139 297-443 26-168 (657)
451 KOG4460 Nuclear pore complex, 93.5 1.7 3.7E-05 40.1 11.7 71 388-458 105-198 (741)
452 COG4590 ABC-type uncharacteriz 93.4 1.8 3.9E-05 39.2 11.6 160 237-421 221-391 (733)
453 COG5290 IkappaB kinase complex 93.3 2.9 6.3E-05 40.8 13.2 135 298-441 206-349 (1243)
454 KOG2280 Vacuolar assembly/sort 93.1 6.4 0.00014 38.4 15.1 198 214-439 64-270 (829)
455 KOG4460 Nuclear pore complex, 93.0 5.2 0.00011 37.2 13.8 73 295-367 105-200 (741)
456 PF08801 Nucleoporin_N: Nup133 92.8 5.2 0.00011 37.4 14.7 29 430-458 191-219 (422)
457 PRK10115 protease 2; Provision 92.6 12 0.00027 37.5 29.0 116 193-322 128-254 (686)
458 PF14655 RAB3GAP2_N: Rab3 GTPa 92.6 2.3 5E-05 39.0 11.5 95 138-233 298-409 (415)
459 PF07250 Glyoxal_oxid_N: Glyox 92.5 3.1 6.7E-05 35.1 11.3 144 272-420 47-201 (243)
460 TIGR03547 muta_rot_YjhT mutatr 92.5 8 0.00017 35.0 23.8 41 409-450 291-332 (346)
461 KOG1916 Nuclear protein, conta 92.4 0.22 4.9E-06 48.6 5.0 95 271-366 153-266 (1283)
462 PF07995 GSDH: Glucose / Sorbo 92.2 8.5 0.00018 34.6 26.8 250 193-453 3-330 (331)
463 COG3823 Glutamine cyclotransfe 92.1 5.4 0.00012 32.3 14.6 183 203-405 55-247 (262)
464 PF10214 Rrn6: RNA polymerase 91.9 16 0.00035 37.2 22.8 132 190-367 144-278 (765)
465 PF14761 HPS3_N: Hermansky-Pud 91.7 6.4 0.00014 32.2 14.4 49 306-355 29-79 (215)
466 TIGR03548 mutarot_permut cycli 91.7 9.5 0.00021 34.1 22.9 63 304-367 123-196 (323)
467 KOG2377 Uncharacterized conser 91.6 6.6 0.00014 35.8 12.6 102 237-353 67-171 (657)
468 PLN02193 nitrile-specifier pro 91.5 13 0.00028 35.4 23.5 154 203-367 228-412 (470)
469 COG4590 ABC-type uncharacteriz 91.5 1.7 3.7E-05 39.4 8.9 175 141-331 214-394 (733)
470 PLN00033 photosystem II stabil 91.3 12 0.00026 34.5 18.4 153 147-320 238-396 (398)
471 TIGR02276 beta_rpt_yvtn 40-res 91.1 1.5 3.2E-05 24.9 6.0 40 303-343 1-41 (42)
472 PF12657 TFIIIC_delta: Transcr 90.9 4.4 9.5E-05 32.3 10.3 28 429-456 86-119 (173)
473 KOG1898 Splicing factor 3b, su 90.9 21 0.00046 36.6 28.8 73 147-219 582-668 (1205)
474 KOG1916 Nuclear protein, conta 90.8 0.14 3.1E-06 49.9 2.0 139 314-457 110-264 (1283)
475 PF13449 Phytase-like: Esteras 90.8 12 0.00026 33.6 18.1 162 147-310 19-231 (326)
476 PF07250 Glyoxal_oxid_N: Glyox 90.7 5.5 0.00012 33.6 10.9 132 317-453 48-194 (243)
477 TIGR03032 conserved hypothetic 90.5 9.9 0.00021 33.2 12.3 121 173-305 189-316 (335)
478 KOG4659 Uncharacterized conser 89.6 30 0.00066 36.5 17.8 281 144-453 344-686 (1899)
479 COG5290 IkappaB kinase complex 89.5 21 0.00046 35.3 14.7 96 240-347 250-348 (1243)
480 KOG1900 Nuclear pore complex, 89.1 7.3 0.00016 40.6 12.0 142 271-417 99-273 (1311)
481 PF14781 BBS2_N: Ciliary BBSom 88.6 8.4 0.00018 28.8 12.8 110 198-329 5-131 (136)
482 PRK13615 lipoprotein LpqB; Pro 88.6 24 0.00053 34.1 18.1 151 297-457 337-501 (557)
483 PF02333 Phytase: Phytase; In 88.2 20 0.00043 32.6 17.6 195 156-365 65-290 (381)
484 PF14761 HPS3_N: Hermansky-Pud 88.0 13 0.00029 30.4 15.4 145 205-364 29-213 (215)
485 KOG1896 mRNA cleavage and poly 88.0 37 0.00081 35.5 24.3 177 267-456 1000-1211(1366)
486 PLN02193 nitrile-specifier pro 87.6 26 0.00057 33.3 20.1 154 203-367 175-353 (470)
487 PF07676 PD40: WD40-like Beta 87.5 2.4 5.2E-05 23.6 4.8 30 333-362 6-38 (39)
488 PF12657 TFIIIC_delta: Transcr 87.3 9.5 0.00021 30.4 9.8 32 386-417 85-122 (173)
489 TIGR03548 mutarot_permut cycli 87.2 22 0.00047 31.9 21.9 115 203-327 72-198 (323)
490 KOG0379 Kelch repeat-containin 86.9 29 0.00064 33.1 15.4 118 203-328 122-254 (482)
491 PF10433 MMS1_N: Mono-function 86.7 31 0.00068 33.2 22.2 261 34-345 219-503 (504)
492 PRK05560 DNA gyrase subunit A; 86.6 41 0.00089 34.5 24.9 243 202-458 496-772 (805)
493 PF07676 PD40: WD40-like Beta 86.5 3.4 7.5E-05 23.0 5.1 30 145-174 6-38 (39)
494 PLN02153 epithiospecifier prot 86.1 26 0.00056 31.7 23.6 116 203-327 32-171 (341)
495 PLN02153 epithiospecifier prot 85.5 27 0.0006 31.5 23.5 123 203-328 85-230 (341)
496 PRK14131 N-acetylneuraminic ac 85.5 30 0.00064 31.8 22.2 241 161-423 42-375 (376)
497 PF11635 Med16: Mediator compl 85.5 45 0.00099 34.0 23.2 69 385-453 258-345 (753)
498 TIGR01063 gyrA DNA gyrase, A s 84.6 52 0.0011 33.8 23.4 160 295-456 590-767 (800)
499 COG4880 Secreted protein conta 84.0 34 0.00073 31.2 13.8 170 272-444 407-581 (603)
500 PF12768 Rax2: Cortical protei 83.9 26 0.00057 30.4 11.4 116 315-437 16-145 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-56 Score=362.89 Aligned_cols=330 Identities=22% Similarity=0.325 Sum_probs=292.7
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
..+.||..+|-|++| +|+|..||||+.|.++++||..++.
T Consensus 109 sS~~GH~e~Vl~~~f-sp~g~~l~tGsGD~TvR~WD~~TeT--------------------------------------- 148 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQF-SPTGSRLVTGSGDTTVRLWDLDTET--------------------------------------- 148 (480)
T ss_pred cccCCCCCcEEEEEe-cCCCceEEecCCCceEEeeccCCCC---------------------------------------
Confidence 357799999999999 9999999999999999999987661
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
+..+.++|...|.|++|+|||+.||+|+.||+|++||.+
T Consensus 149 -----------------------------------------p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 149 -----------------------------------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred -----------------------------------------cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 445678999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699 178 SSTPASRNATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 253 (458)
+++.... ....|...|++++|.| +..++|++++.||.++|||+..++++..+..|. .+|+++.|-.++ ++++
T Consensus 188 tg~~~g~-~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VTCvrwGG~g-liyS 263 (480)
T KOG0271|consen 188 TGQQIGR-ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVTCVRWGGEG-LIYS 263 (480)
T ss_pred CCCcccc-cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceEEEEEcCCc-eEEe
Confidence 9887643 4556888999999986 456799999999999999999999998888776 789999997554 7888
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc-----------cCCC----------------
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-----------HNGK---------------- 306 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~---------------- 306 (458)
++.|+ +|++|+...++....++ +|...|+.++.+ |.++
T Consensus 264 gS~Dr-------------tIkvw~a~dG~~~r~lk--GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 264 GSQDR-------------TIKVWRALDGKLCRELK--GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred cCCCc-------------eEEEEEccchhHHHhhc--ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 88885 99999999998888875 676789988877 2233
Q ss_pred ---------EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 307 ---------ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 307 ---------~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
.|++|+.|.++.+|+... .+++.++.+|..-|+.+.||||++++|++|.|..|++||.++++.+.
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la----- 403 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA----- 403 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh-----
Confidence 499999999999999755 56888999999999999999999999999999999999999875432
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+|-..|+.++|+.|.++|++++.|.++++|++++.+....+.+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus 404 ----sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 404 ----SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ----hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 3446888899999999999999999999999999999988888999999999999999999999999999999995
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.3e-49 Score=333.84 Aligned_cols=410 Identities=18% Similarity=0.260 Sum_probs=323.3
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccc---------ccccccceeeeeccCCceeeeeCCccceeE
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSS---------EACATTATHMGSAEMGQTWASSRPALSRFA 86 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (458)
...++.+|...++-..| ||.|.|+|||...|+++||+... +.+.+++.+++|..+++|++..+.++++|.
T Consensus 51 ~~~iYtEH~~~vtVAky-SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKY-SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred ceeeeccccceeEEEEe-CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 35678899999999999 99999999999999999998754 334489999999999999999999999987
Q ss_pred eeccCCCcccccccccccCCcccceeeeccCCCCcCCC-cceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCC
Q 012699 87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGR-DAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSG 159 (458)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~ 159 (458)
.+..+|..-.+-++ ...-+..+...|.|... .+++++++..+.+ ++..+++.|..-|+|+.|+|||
T Consensus 130 ~~F~~DSG~SvGei-------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 130 HVFLWDSGNSVGEI-------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred EEEEecCCCcccee-------eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCC
Confidence 76655433332222 12222333334444333 3455555555544 5777889999999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccc-cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-C
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNA-TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-P 237 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~ 237 (458)
+++||++.||++.+||-.+++...... ...|.+.|.+++|+ |++..+++++.|.++++||+.+++++.++...... .
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 999999999999999998888765333 44678899999999 78889999999999999999999999888766431 1
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 317 (458)
....+.|. ...|++.+.+ |.|.+++.....+...+ .+|...|+++..+|++++|++|+.||.|
T Consensus 282 qqvG~lWq--kd~lItVSl~-------------G~in~ln~~d~~~~~~i--~GHnK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSLS-------------GTINYLNPSDPSVLKVI--SGHNKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eEEEEEEe--CCeEEEEEcC-------------cEEEEecccCCChhhee--cccccceeEEEEcCCCCEEEeeccCceE
Confidence 22334444 5667777766 69999999998866666 4898999999999999999999999999
Q ss_pred EEEeCCCCcee-----------e--------------------ee-----------------------------------
Q 012699 318 HMFDMSAGLQI-----------T--------------------GW----------------------------------- 331 (458)
Q Consensus 318 ~v~d~~~~~~~-----------~--------------------~~----------------------------------- 331 (458)
.-||..++..- . .+
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~ 424 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVAC 424 (603)
T ss_pred EEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEe
Confidence 99998643210 0 00
Q ss_pred -------eCC--------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 332 -------PAH--------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 332 -------~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
+.+ .-...+++++|+++.++.|+.|+.+++|.+...... .......|...++.+++||
T Consensus 425 ~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-------ee~~~~~h~a~iT~vaySp 497 (603)
T KOG0318|consen 425 ISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-------EEAKLLEHRAAITDVAYSP 497 (603)
T ss_pred cCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-------ceeeeecccCCceEEEECC
Confidence 000 113467889999999999999999999999864321 2223346888999999999
Q ss_pred CCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 397 NGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 397 ~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|+.+||++...+.+.+||+.+.+....... |.+.|++++|+|+..++|||+-|-+|.||+++
T Consensus 498 d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 498 DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 999999999999999999998876443334 99999999999999999999999999999974
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-49 Score=325.73 Aligned_cols=291 Identities=17% Similarity=0.316 Sum_probs=257.4
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
++-..+.||.++|.|++|+|+|+.|++|+.|.++|+||+.+..+.. ....|.+-|.+++|+ |++..|++|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--t~KgH~~WVlcvaws-PDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--TCKGHKNWVLCVAWS-PDGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--eecCCccEEEEEEEC-CCcchhhccccCCeEE
Confidence 3666788999999999999999999999999999999999887754 456788999999999 8899999999999999
Q ss_pred EEEcCCCceee-eccCCCCCCceeeeeecC-----CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 218 AWNVDAKRVVC-DLNTTDAFPSVLDLKCSP-----VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 218 ~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
+||..+|+++. .+..|. ..|.+++|.| ....+++++.| |.++|||+..+.++..+ .+
T Consensus 183 lwdpktg~~~g~~l~gH~--K~It~Lawep~hl~p~~r~las~skD-------------g~vrIWd~~~~~~~~~l--sg 245 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHK--KWITALAWEPLHLVPPCRRLASSSKD-------------GSVRIWDTKLGTCVRTL--SG 245 (480)
T ss_pred EecCCCCCcccccccCcc--cceeEEeecccccCCCccceecccCC-------------CCEEEEEccCceEEEEe--cc
Confidence 99999988763 445444 7899999976 45678888888 69999999988887776 48
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEc-----------CCC-------------
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFG-----------PDE------------- 347 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----------~~~------------- 347 (458)
|..+|+|+.|--+| +|++|+.|++|++|+...|.+...+++|...|+.++.+ |.+
T Consensus 246 HT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 246 HTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 99999999998665 89999999999999999999999999999999999877 223
Q ss_pred ------------CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 348 ------------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 348 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
..|++|++|.++.+|+-...++++ ....+|..-|+.+.||||++++|+++-|..|++|+.
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi--------~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI--------TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccch--------hhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 359999999999999987654432 233478888999999999999999999999999999
Q ss_pred cCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 416 RGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 416 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+++-+..+.+|-++|..++|+.|.++|++|+.|.++++|++
T Consensus 397 ~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred CCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 999999999999999999999999999999999999999997
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-49 Score=327.42 Aligned_cols=285 Identities=20% Similarity=0.322 Sum_probs=261.7
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcC
Q 012699 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~ 222 (458)
-|-+.+|..+.|++|++.|+||+.+|.+++|+..+.... .....|...+.++.|+|. ++..+++++.||++++|++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 367889999999999999999999999999999887543 356678899999999987 47799999999999999999
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
+..++..+..|. ..|..++|+|+|+++.+++.|. +-++||++++...... ++|...|.+++|.
T Consensus 250 ~e~~l~~l~gH~--~RVs~VafHPsG~~L~TasfD~-------------tWRlWD~~tk~ElL~Q--EGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 250 QETPLQDLEGHL--ARVSRVAFHPSGKFLGTASFDS-------------TWRLWDLETKSELLLQ--EGHSKGVFSIAFQ 312 (459)
T ss_pred CCcchhhhhcch--hhheeeeecCCCceeeeccccc-------------chhhcccccchhhHhh--cccccccceeEec
Confidence 999998888877 6899999999999999999996 9999999997766544 5899999999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
|||.++++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|..|||||.|++++|||++..... ...
T Consensus 313 ~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l---------y~i 383 (459)
T KOG0272|consen 313 PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL---------YTI 383 (459)
T ss_pred CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccc---------eec
Confidence 99999999999999999999999999999999999999999999999999999999999999976542 233
Q ss_pred CCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 383 ESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 383 ~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..|..-|+.+.|+| .|.+|++++.|++++||...+..++..+.||.+.|.++..+|++.+++|++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 46888899999999 789999999999999999999999999999999999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.1e-47 Score=300.05 Aligned_cols=296 Identities=16% Similarity=0.250 Sum_probs=259.5
Q ss_pred CeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
+.++++..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+..... ........|..++|+ |+++++++|+-
T Consensus 41 ~~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~s-PSg~~VAcGGL 117 (343)
T KOG0286|consen 41 GRIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYS-PSGNFVACGGL 117 (343)
T ss_pred eeeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEEC-CCCCeEEecCc
Confidence 445566779999999999999999999999999999999999987766543 233345679999999 78999999999
Q ss_pred CCcEEEEEcCCC------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 213 DGGIKAWNVDAK------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 213 dg~i~~wd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
|+...||++.+. ...+.+..| .+.+.++.|.+ ...+++++.|. +..+||+++++....
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gH--tgylScC~f~d-D~~ilT~SGD~-------------TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGH--TGYLSCCRFLD-DNHILTGSGDM-------------TCALWDIETGQQTQV 181 (343)
T ss_pred CceeEEEecccccccccceeeeeecCc--cceeEEEEEcC-CCceEecCCCc-------------eEEEEEcccceEEEE
Confidence 999999999865 223334444 47788999988 45666777774 999999999999988
Q ss_pred eecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 287 LPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
|. +|.+.|.+++++| +++.+++|+-|+..++||++.+.++++|.+|+..|+++.|.|+|.-|++|++|++.++||++
T Consensus 182 f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 182 FH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLR 259 (343)
T ss_pred ec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence 75 8999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
...++... .......+|++++||..|++|++|..|..+.+||.-.++....+.+|...|+++..+|||..++|
T Consensus 260 aD~~~a~y-------s~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~T 332 (343)
T KOG0286|consen 260 ADQELAVY-------SHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVAT 332 (343)
T ss_pred CCcEEeee-------ccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEe
Confidence 87665432 23455677999999999999999999999999999988888888899999999999999999999
Q ss_pred ecCCCcEEEEe
Q 012699 446 GSADHSVQVMS 456 (458)
Q Consensus 446 ~~~dg~v~iw~ 456 (458)
|+.|.++|||.
T Consensus 333 gSWDs~lriW~ 343 (343)
T KOG0286|consen 333 GSWDSTLRIWA 343 (343)
T ss_pred cchhHheeecC
Confidence 99999999994
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.7e-44 Score=315.42 Aligned_cols=412 Identities=15% Similarity=0.214 Sum_probs=335.9
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
+.+++.||-..|+++.| +.|.++|++|+.|-+.++|..+..+-. ..+.-.......++..+..+..-+.+-+.||.+
T Consensus 137 l~r~~~g~fddi~si~W-s~DSr~l~~gsrD~s~rl~~v~~~k~~--~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l 213 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDW-SDDSRLLVTGSRDLSARLFGVDGNKNL--FTYALNGHKDYVVACFFGANSLDLYTVSKDGAL 213 (893)
T ss_pred EeeeecCCccceeEEEe-ccCCceEEeccccceEEEEEecccccc--ceEeccCCCcceEEEEeccCcceEEEEecCceE
Confidence 35688899999999999 999999999999999999998766542 111111222334556677778889999999999
Q ss_pred cccccccccCCcccc---------------------------e---------eeeccCCCCcCCCcceeccCCCeeee--
Q 012699 96 SPSKLEFEDVGAGDI---------------------------I---------QMFNDGLYTENGRDAQGEEDFPEVKV-- 137 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~---------------------------~---------~~~~~~~~~~~g~~~~~~~~~~~~~~-- 137 (458)
.+|....++....+. . ......+|++.-+.++++...+...+
T Consensus 214 ~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 214 FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEe
Confidence 999987332111110 0 00112347777777887777776654
Q ss_pred ----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 138 ----DFLETFLGHTSPISCCRFSSSGNNIASASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 138 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
..++.+.--..+|..++|+..|..||.|+.. |.+-||++.+...+. ....|...+.+++++ ++++++++|+.
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--KQQgH~~~i~~l~YS-pDgq~iaTG~e 370 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--KQQGHSDRITSLAYS-PDGQLIATGAE 370 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--eccccccceeeEEEC-CCCcEEEeccC
Confidence 5677777778899999999999999998754 899999998876643 445677899999999 89999999999
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
||.|++||..++-+..++..|. +.|+.+.|+..++.+++.+-| |+|+.||+...+..++++.+ .
T Consensus 371 DgKVKvWn~~SgfC~vTFteHt--s~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~P-~ 434 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHT--SGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTSP-E 434 (893)
T ss_pred CCcEEEEeccCceEEEEeccCC--CceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecCC-C
Confidence 9999999999999999998776 789999999999999999999 69999999999999999754 4
Q ss_pred CCcEEEEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 293 PPAITSLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
+....|++..|.|.++.+|+.|. .|++|++.+|+.+-.+.+|++||.+++|+|++..|+++|.|.+|++||+-......
T Consensus 435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee
Confidence 45688999999999999998886 69999999999999999999999999999999999999999999999998653322
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------------------CCCCcE
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------------------PHGAAI 431 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------------~h~~~v 431 (458)
.. ......+..++|+|+|+.|++++-||.|.+||.+.......+. .-....
T Consensus 515 Et---------l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 515 ET---------LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred ee---------EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 22 2355668999999999999999999999999997654432111 123578
Q ss_pred EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 432 TTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+.+++++||..+++||....|+||++.
T Consensus 586 tti~ySaDG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 586 TTICYSADGKCILAGGESNSICIYDVP 612 (893)
T ss_pred EEEEEcCCCCEEEecCCcccEEEEECc
Confidence 999999999999999999999999973
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-46 Score=312.12 Aligned_cols=279 Identities=18% Similarity=0.282 Sum_probs=252.4
Q ss_pred ceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEE
Q 012699 73 QTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISC 152 (458)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 152 (458)
......++.++..+++||++|.+++|+..... .+.+|+||++.|.+
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~~----------------------------------~~~~l~gH~~~v~~ 222 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQCN----------------------------------LLQTLRGHTSRVGA 222 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeecCCcc----------------------------------eeEEEeccccceee
Confidence 34456778899999999999999999986654 77889999999999
Q ss_pred EEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 153 CRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 153 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
+.|+|. +..||||+.||++++|++++..++. ....|...|..++|+ |+|++|++++.|.+-++||++++..+...
T Consensus 223 ~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--~l~gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 223 AVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--DLEGHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred EEEccCCCccceeeeccCCceeeeccCCCcchh--hhhcchhhheeeeec-CCCceeeecccccchhhcccccchhhHhh
Confidence 999996 5689999999999999998876654 455677899999999 89999999999999999999999988776
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (458)
..|. ..|.+++|.|+|.++++|+.|. .-+|||+++++++..+. +|..+|..++|+|+|-.||+
T Consensus 300 EGHs--~~v~~iaf~~DGSL~~tGGlD~-------------~~RvWDlRtgr~im~L~--gH~k~I~~V~fsPNGy~lAT 362 (459)
T KOG0272|consen 300 EGHS--KGVFSIAFQPDGSLAATGGLDS-------------LGRVWDLRTGRCIMFLA--GHIKEILSVAFSPNGYHLAT 362 (459)
T ss_pred cccc--cccceeEecCCCceeeccCccc-------------hhheeecccCcEEEEec--ccccceeeEeECCCceEEee
Confidence 6665 7899999999999999999995 88999999999988775 79999999999999999999
Q ss_pred EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce
Q 012699 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR 389 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 389 (458)
|+.|++++|||++..+++.++++|.+-|..+.|+| .|.+|+|++.|+++++|.-.+.. ......+|...|
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---------~~ksLaGHe~kV 433 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---------PLKSLAGHEGKV 433 (459)
T ss_pred cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---------cchhhcCCccce
Confidence 99999999999999999999999999999999999 78899999999999999988654 334456899999
Q ss_pred eEEEEccCCCEEEEEeCCccEEEEE
Q 012699 390 HEMALDVNGRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 390 ~~~~~s~~g~~l~~~~~~~~i~i~~ 414 (458)
.++.++||++++++++.|.++++|.
T Consensus 434 ~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 434 ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999995
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-44 Score=284.21 Aligned_cols=294 Identities=18% Similarity=0.283 Sum_probs=263.2
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+.|+||.+.|.++.+ ++|.+.++|+|.||.+.|||.-+....+.|+ ...|+ ++.++++.+.++|.|+-|....
T Consensus 49 r~LkGH~~Ki~~~~w-s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WV-----MtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW-STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWV-----MTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEecccccceeeeEe-cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeE-----EEEEECCCCCeEEecCcCceeE
Confidence 689999999999999 9999999999999999999998876665554 33444 4588899999999999999999
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
|+++...+. + +. ....+.+.+|++.+.|+.|-+|+ .|+|++.|.++.+||+
T Consensus 123 iy~ls~~d~----------------~----------g~--~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 123 IYPLSTRDA----------------E----------GN--VRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDI 173 (343)
T ss_pred EEecccccc----------------c----------cc--ceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEc
Confidence 999986441 1 11 12566789999999999999865 6889999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
++++... ....|.+.|.++++.|.+++.+++|+-|+..++||++.+.+.+++..++ ..|.++.|.|+|.-+++++.
T Consensus 174 e~g~~~~--~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe--sDINsv~ffP~G~afatGSD 249 (343)
T KOG0286|consen 174 ETGQQTQ--VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE--SDINSVRFFPSGDAFATGSD 249 (343)
T ss_pred ccceEEE--EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccc--cccceEEEccCCCeeeecCC
Confidence 9998754 4557888999999997799999999999999999999999999999887 78999999999999999999
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
| ++.++||++..+.+..+.......+|++++||..|++|++|..|..+.+||.-.++.+..+.+|++
T Consensus 250 D-------------~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 250 D-------------ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN 316 (343)
T ss_pred C-------------ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC
Confidence 9 599999999999999988777778899999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
.|.++..+|||..+++||.|.+++||.
T Consensus 317 RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999994
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=308.93 Aligned_cols=397 Identities=15% Similarity=0.216 Sum_probs=319.0
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+...|++++. ||+|.+|++....|...+-+....-.. ..+..+.|+|+++.+|++.. +-+.
T Consensus 54 ~~~NI~~ial-Sp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~g------------n~lq 120 (893)
T KOG0291|consen 54 TRYNITRIAL-SPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCG------------NLLQ 120 (893)
T ss_pred cCCceEEEEe-CCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEec------------ceeE
Confidence 5667999999 999999999988888877766654433 45566777777666665532 2344
Q ss_pred ccccccccC----------CcccceeeeccCCCCcCCCcceeccCCCeeeeee--------eeeeccCCCCeEEEEeCCC
Q 012699 97 PSKLEFEDV----------GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDF--------LETFLGHTSPISCCRFSSS 158 (458)
Q Consensus 97 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~ 158 (458)
+|....... .............|+.|.+.+++++.+...++.. ...+.||+++|-.+-|..+
T Consensus 121 iw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~ 200 (893)
T KOG0291|consen 121 IWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGAN 200 (893)
T ss_pred EEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccC
Confidence 554332111 0011112224556899999999999988888732 4567799999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCC-----------------------C-CCc-------ccc-ccCCCceEEEEEecCCCeE
Q 012699 159 GNNIASASVDGTVRIWTYDSST-----------------------P-ASR-------NAT-IYCGTEIMSLEWECKSDRL 206 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~-----------------------~-~~~-------~~~-~~~~~~v~~~~~~~~~~~~ 206 (458)
...++|.+.||.+.+|...... . ..+ ... ......+++.+|+ +..+.
T Consensus 201 ~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~ 279 (893)
T KOG0291|consen 201 SLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFH-KGTNL 279 (893)
T ss_pred cceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeecc-CCceE
Confidence 9999999999999999876211 0 000 000 1112678999999 78899
Q ss_pred EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
|++|-..|...+|.+..-.+++.+...+ .+|..++|+..|.+++.++..- |.+-+|+.++..-+.
T Consensus 280 lvvgFssG~f~LyelP~f~lih~LSis~--~~I~t~~~N~tGDWiA~g~~kl------------gQLlVweWqsEsYVl- 344 (893)
T KOG0291|consen 280 LVVGFSSGEFGLYELPDFNLIHSLSISD--QKILTVSFNSTGDWIAFGCSKL------------GQLLVWEWQSESYVL- 344 (893)
T ss_pred EEEEecCCeeEEEecCCceEEEEeeccc--ceeeEEEecccCCEEEEcCCcc------------ceEEEEEeeccceee-
Confidence 9999999999999999999999988876 5799999999999999998764 799999998755444
Q ss_pred eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+..+|...+++++++|||+++++|+.||.|+|||..++-++.++..|+..|+.+.|+..|+.+++.+.||+|+.||+..
T Consensus 345 -KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 345 -KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred -eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 4468889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
....... .. +......+++..|.|..+++|+.|. .|++|++++++.+-.+.||+++|.+++|+|++..||+
T Consensus 424 YrNfRTf------t~--P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 424 YRNFRTF------TS--PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cceeeee------cC--CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 6443321 11 2234467899999999999999874 7999999999988888899999999999999999999
Q ss_pred ecCCCcEEEEeC
Q 012699 446 GSADHSVQVMSL 457 (458)
Q Consensus 446 ~~~dg~v~iw~l 457 (458)
+|+|.+||+|++
T Consensus 496 ~SWDkTVRiW~i 507 (893)
T KOG0291|consen 496 GSWDKTVRIWDI 507 (893)
T ss_pred ccccceEEEEEe
Confidence 999999999996
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-42 Score=295.53 Aligned_cols=402 Identities=15% Similarity=0.187 Sum_probs=304.8
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
..++.|...|+|++| +|||..++|.+.|+++.++|-.++...+.+.. .-...+..+++.-++++..+++.+.|.++++
T Consensus 184 ~s~r~HskFV~~VRy-sPDG~~Fat~gsDgki~iyDGktge~vg~l~~-~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRY-SPDGSRFATAGSDGKIYIYDGKTGEKVGELED-SDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred ecccccccceeeEEE-CCCCCeEEEecCCccEEEEcCCCccEEEEecC-CCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 467789999999999 99999999999999999999999988766654 2333456666777777889999999999999
Q ss_pred cccccccCCcccceeeecc------CCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEEEE
Q 012699 98 SKLEFEDVGAGDIIQMFND------GLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIASA 165 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 165 (458)
|++..... ......... ...-+ ...+.+.+..+.+.+ ..++.+.||...|+++..+|++++|++|
T Consensus 262 WdVs~~sl--v~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 262 WDVSTNSL--VSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEeeccce--EEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 99976531 111111100 01111 334444445555544 4677889999999999999999999999
Q ss_pred eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec--cCCCCCCceeeee
Q 012699 166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL--NTTDAFPSVLDLK 243 (458)
Q Consensus 166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~v~~~~ 243 (458)
+.||.|.-|+..++..- +.....|...|.+++-+ ....+++.+.|.++++.++..+...... +.. .....++
T Consensus 339 syDG~I~~W~~~~g~~~-~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg---~QP~~la 412 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSD-RLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG---SQPKGLA 412 (603)
T ss_pred ccCceEEEEecCCcccc-ccccccccceEEEEeec--CCCcEEEEecCCeEEEEecccCcccccceeecC---CCceeEE
Confidence 99999999999887654 22334577889999876 3355888889999999998755443322 222 2344888
Q ss_pred ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC
Q 012699 244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~ 323 (458)
..+++..++.+... .|.+..-.+ ....+.. .....+++++|++..+++|+.||.|++|.+.
T Consensus 413 v~~d~~~avv~~~~--------------~iv~l~~~~--~~~~~~~---~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~ 473 (603)
T KOG0318|consen 413 VLSDGGTAVVACIS--------------DIVLLQDQT--KVSSIPI---GYESSAVAVSPDGSEVAVGGQDGKVHVYSLS 473 (603)
T ss_pred EcCCCCEEEEEecC--------------cEEEEecCC--cceeecc---ccccceEEEcCCCCEEEEecccceEEEEEec
Confidence 88888776666554 555554222 2222221 1336889999999999999999999999998
Q ss_pred CCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699 324 AGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL 401 (458)
Q Consensus 324 ~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 401 (458)
... .......|.++|+++++|||+.+|+++...+.+.+||+.+..... ..-..|...|.+++|+|+.+++
T Consensus 474 g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~--------~~w~FHtakI~~~aWsP~n~~v 545 (603)
T KOG0318|consen 474 GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT--------NRWAFHTAKINCVAWSPNNKLV 545 (603)
T ss_pred CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec--------ceeeeeeeeEEEEEeCCCceEE
Confidence 754 344567899999999999999999999999999999999764411 1122477889999999999999
Q ss_pred EEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 402 LVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 402 ~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|+|+-|..|.||+++......... .|...|+.+.|-.+ ..|++.|.|..|++|++.
T Consensus 546 ATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 546 ATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 999999999999998876554444 69989999999744 579999999999999873
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=272.87 Aligned_cols=291 Identities=15% Similarity=0.247 Sum_probs=249.1
Q ss_pred eeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 139 FLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
...++++|++.|+.++..+. ...+++++.|.++.+|++....... ......|.+.|..+..+ +++++.++++.|+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~ 85 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDG 85 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-cCCceEEeccccc
Confidence 55678999999999999886 5678999999999999987653321 23344578899999999 8999999999999
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
++++||+.+++..+.+..|. ..|.+++++++...+++++.|+ +|++|++....... +.-..+..
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~--~dVlsva~s~dn~qivSGSrDk-------------Tiklwnt~g~ck~t-~~~~~~~~ 149 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHT--KDVLSVAFSTDNRQIVSGSRDK-------------TIKLWNTLGVCKYT-IHEDSHRE 149 (315)
T ss_pred eEEEEEecCCcEEEEEEecC--CceEEEEecCCCceeecCCCcc-------------eeeeeeecccEEEE-EecCCCcC
Confidence 99999999999988888877 6899999999999999999996 99999998744444 33334478
Q ss_pred cEEEEEEccC--CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 295 AITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 295 ~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
.|+|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++..+....
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 9999999998 68999999999999999999999999999999999999999999999999999999999998765332
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC----CC-----CCcEEEEEECCCCCeE
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL----PH-----GAAITTVDWHPTLPMF 443 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~----~h-----~~~v~~~~~~~~~~~l 443 (458)
..+...|.+++|+|+...|+.+...+ |+|||+++...+..+. +. .....+++|++||..|
T Consensus 230 ----------l~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 230 ----------LEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred ----------ccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 24667799999999998888777665 9999999886654443 22 3456788999999999
Q ss_pred EEecCCCcEEEEeC
Q 012699 444 LTGSADHSVQVMSL 457 (458)
Q Consensus 444 ~s~~~dg~v~iw~l 457 (458)
.+|-.|+.|++|.+
T Consensus 299 f~g~td~~irv~qv 312 (315)
T KOG0279|consen 299 FAGYTDNVIRVWQV 312 (315)
T ss_pred EeeecCCcEEEEEe
Confidence 99999999999986
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-43 Score=311.83 Aligned_cols=389 Identities=15% Similarity=0.167 Sum_probs=302.0
Q ss_pred CcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccc
Q 012699 24 SETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFE 103 (458)
Q Consensus 24 ~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 103 (458)
...|+++++ +||++.|++++...-+++|...++.++.....+.. +..+.+.+.+.+..+++|+.|+.+++||+...
T Consensus 62 ~d~ita~~l-~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He---~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~ 137 (775)
T KOG0319|consen 62 EDEITALAL-TPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE---APVITMAFDPTGTLLATGGADGRVKVWDIKNG 137 (775)
T ss_pred hhhhheeee-cCCccEEEEeeccceEEEEEcccchHhHhHhhccC---CCeEEEEEcCCCceEEeccccceEEEEEeeCC
Confidence 445999999 99999999999999999999999976644333333 33466778888899999999999999998774
Q ss_pred cCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC--EEEEEeCCCcEEEEecCCCCC
Q 012699 104 DVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN--NIASASVDGTVRIWTYDSSTP 181 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~ 181 (458)
. +.+.|+||.+.|.++.|+|+-. .|++|..|+++++||+.+...
T Consensus 138 ~----------------------------------~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t 183 (775)
T KOG0319|consen 138 Y----------------------------------CTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT 183 (775)
T ss_pred E----------------------------------EEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch
Confidence 4 7889999999999999999754 489999999999999986654
Q ss_pred CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC-----CCeEEEeec
Q 012699 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAA 256 (458)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~ 256 (458)
.......|.+.|++++|. +++..+++++.|..+.+||+..-+...++...+ .+.++.+-++ +.++++++.
T Consensus 184 -cl~~~~~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 184 -CLHTMILHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYE---SLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred -HHHHHHhhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhh---heeeEEEechhcCCcceEEEEecC
Confidence 233456688999999999 678889999999999999986544333322221 1222222222 122222222
Q ss_pred cc-------------------------------------------------------------------------CCCCc
Q 012699 257 SR-------------------------------------------------------------------------RYGSS 263 (458)
Q Consensus 257 ~~-------------------------------------------------------------------------~~~~~ 263 (458)
++ +....
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 11 12345
Q ss_pred ceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC----ceeeeeeCCCCCeE
Q 012699 264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG----LQITGWPAHDSAIS 339 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~ 339 (458)
.+.+++.+.+++|++.+..+. . +.+|...|.++....+|-+|++|+.|.++++|.++++ .++....+|.+.|.
T Consensus 339 laVATNs~~lr~y~~~~~~c~-i--i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQ-I--IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred EEEEeCCCceEEEecCCCceE-E--EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 566777788888888776665 2 4689899999996677889999999999999987443 34566789999999
Q ss_pred EEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 340 SILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 340 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
+++++..+ .+|+++|.|+++++|++...++...............|...|++++++|+.+++|+|+.|.+.+||+++..
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 99997754 58999999999999999873222111111111233468899999999999999999999999999999977
Q ss_pred CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 419 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.....+.+|...|+++.|+|..+.|||+|.|++|+||.++
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 7777778999999999999999999999999999999975
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.3e-43 Score=308.59 Aligned_cols=416 Identities=15% Similarity=0.174 Sum_probs=318.4
Q ss_pred HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
...+..++.|...|++++| ++|+..+++++.|..+.|||+...+.....+.........++--.....+.++.+.+.+|
T Consensus 182 ~tcl~~~~~H~S~vtsL~~-~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g 260 (775)
T KOG0319|consen 182 RTCLHTMILHKSAVTSLAF-SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG 260 (775)
T ss_pred chHHHHHHhhhhheeeeee-ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc
Confidence 3467788999999999999 999999999999999999999655544222211111110000001112367999999999
Q ss_pred cccccccccccCCccccee----eeccCCCCcCCCcceeccCCCeee-----eeeeeeeccCCCCeEEEEe-CCCCCEEE
Q 012699 94 SISPSKLEFEDVGAGDIIQ----MFNDGLYTENGRDAQGEEDFPEVK-----VDFLETFLGHTSPISCCRF-SSSGNNIA 163 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~-~~~~~~l~ 163 (458)
.++.|+............. ..+.......++.+....+...+- ++..+.+-|..+.|..|+| .|+.++||
T Consensus 261 ~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 261 VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 9999998765422111111 111112222333332222222111 2466677888999999997 56778999
Q ss_pred EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceee
Q 012699 164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLD 241 (458)
Q Consensus 164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~ 241 (458)
.++..+.+|+|++.+..+. ....|...|.++... ..+.+|++|+.|.++++|.++.+. ....-....|...|.+
T Consensus 341 VATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~-~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 341 VATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVW-SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred EEeCCCceEEEecCCCceE---EEeCchhheeeeeec-ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 9999999999988877664 456677889999843 466899999999999999884433 2222233445578899
Q ss_pred eeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCcee---EEe----ecCCCCCcEEEEEEccCCCEEEEEec
Q 012699 242 LKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM---TVL----PLGEDPPAITSLCFNHNGKILAASAV 313 (458)
Q Consensus 242 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~---~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (458)
++++..+. .|++++.| +++++|++...+.. ..+ ....|...|++++++|+.+++++|+.
T Consensus 417 va~~~~~asffvsvS~D-------------~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq 483 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQD-------------CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ 483 (775)
T ss_pred eeecccCccEEEEecCC-------------ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence 99877665 67777777 59999999862221 111 23467789999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
|.+.++|+++......++.+|...|+++.|+|..+.++|+|.|++|+||.+.+..... ..++|...|..+.
T Consensus 484 DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk---------T~eGH~~aVlra~ 554 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK---------TFEGHTSAVLRAS 554 (775)
T ss_pred ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee---------eecCccceeEeee
Confidence 9999999999999999999999999999999999999999999999999999864332 3457889999999
Q ss_pred EccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
|-.+|+.|++++.||.+++|++++......+-.|.+.|++++.+|...+++||+.||.|.+|.
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999998888889999999999999999999999999999995
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-42 Score=271.06 Aligned_cols=305 Identities=19% Similarity=0.308 Sum_probs=247.5
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
..-.|++|+..|+.++....+-++|++++.|.++.+|+.... +
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-------------d------------------------ 49 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-------------D------------------------ 49 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-------------c------------------------
Confidence 345889999999999994455778999999999999986543 1
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
. +.| ..++.|.||...|..+..++||++.++++.|+++++||
T Consensus 50 ----~--------------------~~G--------------~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD 91 (315)
T KOG0279|consen 50 ----I--------------------KYG--------------VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD 91 (315)
T ss_pred ----c--------------------ccC--------------ceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence 0 111 16778899999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEE
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVS 253 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~ 253 (458)
+.+++.. .....|...|.+++|+ ++.+.+++|+.|.+|++|++..+.. .++....+..-|.++.|+|+ ...+++
T Consensus 92 l~~g~~t--~~f~GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 92 LATGEST--RRFVGHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred ecCCcEE--EEEEecCCceEEEEec-CCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 9998653 3566788999999999 7888899999999999999876544 34444333478999999999 689999
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
++.|+ ++++||+++.+....+. +|...++.+++||||.+.++|+.||.+.+||++.++.+..+ .
T Consensus 168 ~s~Dk-------------tvKvWnl~~~~l~~~~~--gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~ 231 (315)
T KOG0279|consen 168 ASWDK-------------TVKVWNLRNCQLRTTFI--GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-E 231 (315)
T ss_pred ccCCc-------------eEEEEccCCcchhhccc--cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-c
Confidence 99995 99999999988877764 78889999999999999999999999999999999998876 4
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
|...|.+++|+|+...|+.+.. ..|+|||+.+...+........-.........-.+++|++||+.|+.|-.|+.|++|
T Consensus 232 a~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~ 310 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVW 310 (315)
T ss_pred CCCeEeeEEecCCceeEeeccC-CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEE
Confidence 7889999999999877766554 459999999865443221111111122223445679999999999999999999999
Q ss_pred Ecc
Q 012699 414 QVR 416 (458)
Q Consensus 414 ~~~ 416 (458)
.+.
T Consensus 311 qv~ 313 (315)
T KOG0279|consen 311 QVA 313 (315)
T ss_pred Eee
Confidence 874
No 15
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=307.41 Aligned_cols=286 Identities=19% Similarity=0.314 Sum_probs=247.8
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.+.||+..|.+++++.+...++||+ .+.+++|+..+.+++. +.... -+.+..|. |+++++++|...|.+.+||+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciR---Ti~~~-y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIR---TITCG-YILASKFV-PGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeE---Eeccc-cEEEEEec-CCCceEEEeccCCceEEEEe
Confidence 4568999999999999988777775 5789999999888764 23233 67888888 78899999999999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-----CceeEEeecC-----C
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-----WKAMTVLPLG-----E 291 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-----~~~~~~~~~~-----~ 291 (458)
.+...+.+++.|+ +.++.++..|++..+++++.|. +|++||..- +...+.+.+. .
T Consensus 442 aS~~l~Eti~AHd--gaIWsi~~~pD~~g~vT~saDk-------------tVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 442 ASASLVETIRAHD--GAIWSISLSPDNKGFVTGSADK-------------TVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred ehhhhhhhhhccc--cceeeeeecCCCCceEEecCCc-------------EEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 9999988888666 7899999999999999999995 999999742 1111111111 1
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
-+..|.|+.+||||++|+++-.|.+++||-+.+.+....+-+|.-||.|+..+||++.++|||.|.+|++|-+.=+
T Consensus 507 l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---- 582 (888)
T KOG0306|consen 507 LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---- 582 (888)
T ss_pred ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc----
Confidence 2356999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
.|++ ....|...|.++.|-|+..++.+++.|+.++-||-..-+.+..+.+|...|++++.+|+|.+++++|.|.+
T Consensus 583 ---DCHK--S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 583 ---DCHK--SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred ---hhhh--hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 3322 34578899999999999999999999999999999998888999999999999999999999999999999
Q ss_pred EEEEeC
Q 012699 452 VQVMSL 457 (458)
Q Consensus 452 v~iw~l 457 (458)
||+|..
T Consensus 658 IRlwE~ 663 (888)
T KOG0306|consen 658 IRLWER 663 (888)
T ss_pred eEeeec
Confidence 999974
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=263.76 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=254.3
Q ss_pred cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699 82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN 161 (458)
Q Consensus 82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 161 (458)
..-+|++++.|.+|++|...... +.++++...+.|+.+...|+++.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~----------------------------------C~rTiqh~dsqVNrLeiTpdk~~ 54 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGI----------------------------------CSRTIQHPDSQVNRLEITPDKKD 54 (311)
T ss_pred CceEEEeccCcceeeeeehhcCe----------------------------------EEEEEecCccceeeEEEcCCcch
Confidence 45789999999999999976633 77788878889999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
||+++. -.||+||+.++.+........+...|.++.|. .+++.+++|++||+++|||++...+.+.++.. .+|.+
T Consensus 55 LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~ 129 (311)
T KOG0315|consen 55 LAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNT 129 (311)
T ss_pred hhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCC---CCcce
Confidence 998875 67999999998886555666677899999999 89999999999999999999996665555544 78999
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 321 (458)
+..+|+...|+++..+ |.|++||+....+...+. ++....|.++...|+|.+++.+...|..++|+
T Consensus 130 vvlhpnQteLis~dqs-------------g~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQS-------------GNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred EEecCCcceEEeecCC-------------CcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 9999999999999888 699999999887776664 34457899999999999999999999999999
Q ss_pred CCCC------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 322 MSAG------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 322 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
+-+. +++.+++.|++.+..+.+|||+++|+++|.|.+++||+..+.-. .......+..++...+||
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k--------le~~l~gh~rWvWdc~FS 267 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK--------LELVLTGHQRWVWDCAFS 267 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCcee--------eEEEeecCCceEEeeeec
Confidence 8653 46778899999999999999999999999999999999987611 111234677899999999
Q ss_pred cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699 396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH 437 (458)
Q Consensus 396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 437 (458)
.||+||++|+.|+.+++|++..++.+....+|.....+++..
T Consensus 268 ~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 268 ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 999999999999999999999999999999988887777653
No 17
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.2e-41 Score=296.44 Aligned_cols=383 Identities=19% Similarity=0.224 Sum_probs=297.6
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLE 101 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 101 (458)
-...|+|++- ++|...||.|-.||.++||+..++... ..-.|.+.+.. +.++..+..+++|+.|+.|.+||+-
T Consensus 64 ~k~evt~l~~-~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~-----l~fd~~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 64 KKAEVTCLRS-SDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT-----LKFDKIGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred ccceEEEeec-cCCcceEEEEecCceEEeeccCCCceeeeecccccceEE-----EEEcccCceEeecCCCccEEEEEec
Confidence 3468999999 999999999999999999999977443 33345444444 6788889999999999999999986
Q ss_pred cccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC
Q 012699 102 FEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181 (458)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 181 (458)
... -+..|+||.+.|+.+-|..+.+++++++.|+.|++||+++..+
T Consensus 138 ~E~----------------------------------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 138 GEE----------------------------------GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred cce----------------------------------eeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 533 3456889999999999999888999999999999999999887
Q ss_pred CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC------------------------CceeeeccCCC---
Q 012699 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA------------------------KRVVCDLNTTD--- 234 (458)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~------------------------~~~~~~~~~~~--- 234 (458)
.. ....|.+.++.+++.+ ..+++++.|+.+++|++.. ++.+.....+.
T Consensus 184 f~--Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 184 FE--THVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRF 258 (888)
T ss_pred ee--EEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccE
Confidence 54 4567889999999982 7899999999999999811 00000000000
Q ss_pred ------------------------------------C------------------------CCceeeeeecCCCCeE---
Q 012699 235 ------------------------------------A------------------------FPSVLDLKCSPVEPIF--- 251 (458)
Q Consensus 235 ------------------------------------~------------------------~~~v~~~~~~~~~~~~--- 251 (458)
. ...+.++.+.|.+...
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~l 338 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTL 338 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeE
Confidence 0 0012233333322211
Q ss_pred EE----------eeccc--------------------------CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 252 VS----------AAASR--------------------------RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 252 ~~----------~~~~~--------------------------~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
+. -.... ......+.....+.+++|+..+.+++.++.. ..
T Consensus 339 v~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~----~y 414 (888)
T KOG0306|consen 339 VLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC----GY 414 (888)
T ss_pred EEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc----cc
Confidence 00 00000 0011222334447999999999999998863 26
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe------
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ------ 369 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 369 (458)
+.+..|-|.++++++|...|.+.+||+.+...+.++++|.+.|+.++.+||++.++++|.|.+|++||..-...
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999863211
Q ss_pred -eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 370 -VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
.+.. ...........+.++.+||||++||++=-|+++++|-+++.+-...+.||.-||.|+..+||+++++|||.
T Consensus 495 k~lsl----~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 495 KVLSL----KHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred eeeee----ccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccC
Confidence 1100 11112235667999999999999999999999999999999888889999999999999999999999999
Q ss_pred CCcEEEEeCC
Q 012699 449 DHSVQVMSLS 458 (458)
Q Consensus 449 dg~v~iw~l~ 458 (458)
|.+|+||-++
T Consensus 571 DKnVKiWGLd 580 (888)
T KOG0306|consen 571 DKNVKIWGLD 580 (888)
T ss_pred CCceEEeccc
Confidence 9999999874
No 18
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=270.93 Aligned_cols=331 Identities=16% Similarity=0.260 Sum_probs=285.2
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+..|..|+..|-+++. +|+.++++||+.|....+|+..++.
T Consensus 57 ~~tF~~H~~svFavsl-~P~~~l~aTGGgDD~AflW~~~~ge-------------------------------------- 97 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSL-HPNNNLVATGGGDDLAFLWDISTGE-------------------------------------- 97 (399)
T ss_pred eeehhhcCCceEEEEe-CCCCceEEecCCCceEEEEEccCCc--------------------------------------
Confidence 5688999999999999 9999999999999999999987772
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
....+.+|...|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 98 ------------------------------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 98 ------------------------------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ------------------------------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 22345699999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
.++..... .......+.-+.|+ +....|++|+.||.+-+|.+.++...+.+..+. .++++-.|.|+|+.++++..
T Consensus 136 stg~~~~~--~~~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~--~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 136 STGGEQWK--LDQEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN--SPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ccCceEEE--eecccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCC--CCcccccccCCCceEEEEec
Confidence 88876432 22345678889999 588999999999999999999988888887765 78999999999999999998
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP---- 332 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---- 332 (458)
+ |+|++||+++++++..+.... .....++.++..+..++.|+.++.+++.+..+++.+....
T Consensus 211 d-------------gti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 211 D-------------GTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred C-------------ceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 8 699999999999999887544 3567889999999999999999999999988888777665
Q ss_pred ----CCCCCeEEEEEcC---CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 333 ----AHDSAISSILFGP---DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 333 ----~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
.+...+.++.+.| .-++.|+|+-||+|.|||+.... +...-.|...|..+.|-+ ..+|++++
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~-t~~l~t~c 345 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLN-TDYLLTAC 345 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcC-cchheeec
Confidence 3455556666655 45678899999999999998652 222335677799999999 89999999
Q ss_pred CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 406 GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 406 ~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+|.|++||.+++.....+.||..+|.+++.+|+.++++|+|.|++.+||+++
T Consensus 346 ~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999863
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-40 Score=278.48 Aligned_cols=279 Identities=19% Similarity=0.308 Sum_probs=242.0
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
+..|++++|+.+|.+||+|+.||.+++|+....... ....|.++|.++.|+ ..+.+|++++.|+++.+||..++..
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~---tl~~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS---TLGQHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh---hhhccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceE
Confidence 457999999999999999999999999998765432 355688999999999 8999999999999999999999999
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
...+..+. .+..++.|-.+. .+++.+.+ |.|+++.+....+..++. +|.++|.++.|+|.|.
T Consensus 311 ~q~f~~~s--~~~lDVdW~~~~-~F~ts~td-------------~~i~V~kv~~~~P~~t~~--GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 311 KQQFEFHS--APALDVDWQSND-EFATSSTD-------------GCIHVCKVGEDRPVKTFI--GHHGEVNALKWNPTGS 372 (524)
T ss_pred EEeeeecc--CCccceEEecCc-eEeecCCC-------------ceEEEEEecCCCcceeee--cccCceEEEEECCCCc
Confidence 88887775 344677776554 45555555 599999999989988886 5889999999999999
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC---------CEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE---------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
+|++++.|++++||.+........+.+|...|..+.|+|.| ..+++++.|++|++||+..+.+...
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~----- 447 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHT----- 447 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEe-----
Confidence 99999999999999999999999999999999999999954 5699999999999999998755442
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
...|..+|++++|||+|+++|+|+.||.|++|+.++.+.. +...-.+.|..++|+.+|..|..+-.|+.+++-|+
T Consensus 448 ----f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~-~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 448 ----LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV-KSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ----eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee-EeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3358888999999999999999999999999999998544 33445567999999999999999999999999876
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-41 Score=265.95 Aligned_cols=297 Identities=15% Similarity=0.281 Sum_probs=253.1
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
++..+.+|.+.|+.+.|+|+|.+||||+.|..|.+|++.....- ......|.+.|..+.|. .+++.+++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-~~~lkgHsgAVM~l~~~-~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-FWVLKGHSGAVMELHGM-RDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-eeeeccccceeEeeeec-cCCCEEEEecCCceEEE
Confidence 55567899999999999999999999999999999997554332 22345788999999999 88999999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||+++|+....++.+. .-+..+....-|..++..+.+. |++++||+++...++.+. .+..+++
T Consensus 117 wD~~tG~~~rk~k~h~--~~vNs~~p~rrg~~lv~SgsdD------------~t~kl~D~R~k~~~~t~~---~kyqltA 179 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHT--SFVNSLDPSRRGPQLVCSGSDD------------GTLKLWDIRKKEAIKTFE---NKYQLTA 179 (338)
T ss_pred Eecccceeeehhcccc--ceeeecCccccCCeEEEecCCC------------ceEEEEeecccchhhccc---cceeEEE
Confidence 9999999999888876 5688888777777666665554 699999999988888763 3456999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+.|...+..+.+|+-|+.|++||++.......+.+|.++|+.+..+|+|.++.+-+.|.++++||++....... +..
T Consensus 180 v~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R---~v~ 256 (338)
T KOG0265|consen 180 VGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR---CVK 256 (338)
T ss_pred EEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc---eEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999986432111 001
Q ss_pred ccCC--CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 379 FCDP--ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 379 ~~~~--~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.... ...+.....++|+|+++.+.+|+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=+
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 1111 12234456789999999999999999999999999888999999999999999999999999999999998755
Q ss_pred C
Q 012699 457 L 457 (458)
Q Consensus 457 l 457 (458)
+
T Consensus 337 i 337 (338)
T KOG0265|consen 337 I 337 (338)
T ss_pred c
Confidence 4
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=256.99 Aligned_cols=274 Identities=14% Similarity=0.221 Sum_probs=231.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCC
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFP 237 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~ 237 (458)
-+|++++.|.+||+|...++.+.. ......+.|+.+... +++..|++++. ..||+||++++.+ +.++..+. .
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~r--Tiqh~dsqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~--k 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSR--TIQHPDSQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHT--K 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEE--EEecCccceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCceeEEeccC--C
Confidence 478999999999999999998764 233345789999999 67777777765 5899999998765 55555554 6
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 317 (458)
.|..+.|..+|++++++++| |+++|||++...+.+.+. +..+|+++..+|+...|++|..+|.|
T Consensus 85 NVtaVgF~~dgrWMyTgseD-------------gt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~i 148 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSED-------------GTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNI 148 (311)
T ss_pred ceEEEEEeecCeEEEecCCC-------------ceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcE
Confidence 89999999999999999999 699999999977777664 55789999999999999999999999
Q ss_pred EEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 318 HMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 318 ~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
++||+....+...+ +....+|.++...|||++++.+...|+.++|++.+..... ..........|...+..+.+||
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s---~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTAS---ELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccc---cceEhhheecccceEEEEEECC
Confidence 99999887665544 3445689999999999999999999999999998744332 2223344567899999999999
Q ss_pred CCCEEEEEeCCccEEEEEccCC-CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 397 NGRRLLVTSGSVRAPIYQVRGH-ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 397 ~g~~l~~~~~~~~i~i~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|+++||+++.|.+++||+.++. +....+.+|..-+++++||.||++|+||+.|+.+++|+++
T Consensus 226 d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence 9999999999999999999988 4445566899999999999999999999999999999974
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=279.23 Aligned_cols=283 Identities=16% Similarity=0.300 Sum_probs=244.7
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.-..+|..+.|.|+|+.|++|+..|.+.+|+..+-. .......|..+|.++.|+ .++.++++|+.+|.|+.|+..-.
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchh
Confidence 345689999999999999999999999999874322 233456688999999999 89999999999999999998754
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
... .+..+ +...|++++|+|+...+++++.| |.|+|||....+....+ .+|.-.|.++.|+|.
T Consensus 171 nVk-~~~ah-h~eaIRdlafSpnDskF~t~SdD-------------g~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 171 NVK-IIQAH-HAEAIRDLAFSPNDSKFLTCSDD-------------GTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPT 233 (464)
T ss_pred hhH-HhhHh-hhhhhheeccCCCCceeEEecCC-------------CeEEEEeccCCchhhee--ccCCCCcceeccCCc
Confidence 433 23332 22579999999999999999998 59999999988877776 478788999999999
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES 384 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 384 (458)
..++++|+.|..|++||.++++++.++.+|...|..+.|+|++++|+++|.|..++++|++..+++ .....
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl---------~~~r~ 304 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL---------FTYRG 304 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH---------HHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999965543 33446
Q ss_pred CCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 385 SKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 385 ~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
|...++++.|+| ...+|.+|+.||.|..|.+...+++..+. +|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 305 Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 305 HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred chhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 888899999999 45677889999999999998555554444 7999999999999999999999999999996
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=250.18 Aligned_cols=290 Identities=16% Similarity=0.287 Sum_probs=238.6
Q ss_pred eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCC-Cc-cccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 138 DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPA-SR-NATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
..++.+++|.+++..++|+|- |..||||+.|+.|++|+..++... .+ ...-.|...|.+++|+ |.+++|++++.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCCcEEEEeeccc
Confidence 367788999999999999998 889999999999999998853221 11 1122467889999999 7788999999999
Q ss_pred cEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCC
Q 012699 215 GIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGE 291 (458)
Q Consensus 215 ~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~ 291 (458)
++.||.-..++ ++.+++.|+ +.|.+++|+++|.+|++++.|+ .|-+|........... .+.+
T Consensus 84 t~~Iw~k~~~efecv~~lEGHE--nEVK~Vaws~sG~~LATCSRDK-------------SVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHE--NEVKCVAWSASGNYLATCSRDK-------------SVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred eEEEeecCCCceeEEeeeeccc--cceeEEEEcCCCCEEEEeeCCC-------------eEEEEEecCCCcEEEEeeecc
Confidence 99999877654 455555555 7899999999999999999996 9999998754433322 3468
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCC---CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMS---AGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
|...|..+.|+|...+|++++.|.+|++|+-. ..++++++.+|...|.+++|+|.|..|++++.|++++||.....
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~- 227 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD- 227 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-
Confidence 88999999999999999999999999999876 34678999999999999999999999999999999999986632
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC--ccc-----ccCCCCCcEEEEEECCC-C
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA--SGM-----RTLPHGAAITTVDWHPT-L 440 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~--~~~-----~~~~h~~~v~~~~~~~~-~ 440 (458)
-+..+...+..++|. ...|+++++|+.|++|.-.... +.. ....|...|++++|.|. .
T Consensus 228 ------------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 228 ------------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred ------------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC
Confidence 112456678889998 6689999999999999876431 111 12269999999999995 5
Q ss_pred CeEEEecCCCcEEEEeCC
Q 012699 441 PMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l~ 458 (458)
.+|++|+.||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 689999999999999873
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-39 Score=263.58 Aligned_cols=289 Identities=18% Similarity=0.311 Sum_probs=260.9
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
....+.+|..+|+.+-|+|+-..++++++|++|++||..+++.. .....|...+..++|+ ..+.++++++.|=.+.+
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~LrGHt~sv~di~~~-a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLRGHTDSVFDISFD-ASGKYLATCSSDLSAKL 176 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhhccccceeEEEEe-cCccEEEecCCccchhh
Confidence 55667799999999999999999999999999999999999874 3455677789999999 88999999999988999
Q ss_pred EEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 219 WNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 219 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
||.++ -+++..+..++ ..|.++.|-|.+.++++++.|. +|+.|++.++-++.+++ +|+..|.
T Consensus 177 Wd~~~~~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~-------------tik~We~~tg~cv~t~~--~h~ewvr 239 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDN-------------TIKAWECDTGYCVKTFP--GHSEWVR 239 (406)
T ss_pred eeHHHHHHHHHHhcCcc--cceeeEEEEecCCeeeeccccc-------------ceeEEecccceeEEecc--CchHhEE
Confidence 99987 45555555555 5799999999999999999995 99999999999999885 7888999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC---------------CCEEEEecCCCeEEEE
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD---------------ETSIFSLGSDGKIIEW 362 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iw 362 (458)
.+..+.||..+++++.|.++++|-+.++++...++.|+-+|.+++|.|. +.++.+++.|++|++|
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 9999999999999999999999999999999999999999999999772 2589999999999999
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCe
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPM 442 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 442 (458)
|+.++..+... .+|..+|..++|+|.|+||+++.+|+++++||++..........|...|+++.|+.+..+
T Consensus 320 dv~tg~cL~tL---------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 320 DVSTGMCLFTL---------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY 390 (406)
T ss_pred eccCCeEEEEE---------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence 99988655533 378999999999999999999999999999999999888888899999999999999999
Q ss_pred EEEecCCCcEEEEe
Q 012699 443 FLTGSADHSVQVMS 456 (458)
Q Consensus 443 l~s~~~dg~v~iw~ 456 (458)
++||+-|.++++|.
T Consensus 391 VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWE 404 (406)
T ss_pred EEeccccceeeeee
Confidence 99999999999996
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.2e-39 Score=291.70 Aligned_cols=276 Identities=18% Similarity=0.308 Sum_probs=231.1
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF 102 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 102 (458)
-...++|..| ++|+.+||.|-.|..+++|.+....+. .+++..+... +-+.+.|-.+.+.|...
T Consensus 377 t~~~v~ca~f-SddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~~~~l~~--------------~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 377 TYQGVTCAEF-SDDSSMLACGFVDSSVRVWSLTPKKLK-KLKDASDLSN--------------IDTESADVDVDMLDDDS 440 (707)
T ss_pred cCCcceeEee-cCCcchhhccccccEEEEEecchhhhc-cccchhhhcc--------------ccccccchhhhhccccC
Confidence 3445999999 999999999999999999998765322 2222221111 11122222222212111
Q ss_pred ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC
Q 012699 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA 182 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 182 (458)
. ...+++.||.++|..+.|+|+.++|++|++|+++|+|.+.+....
T Consensus 441 ~----------------------------------~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~ 486 (707)
T KOG0263|consen 441 S----------------------------------GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL 486 (707)
T ss_pred C----------------------------------ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE
Confidence 0 144568899999999999999999999999999999999988775
Q ss_pred CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC
Q 012699 183 SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS 262 (458)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
. ....|..+|+.+.|+ |.+-++++++.|++-++|..+...+.+.+..+. +.|.++.|+|+..++++|+.|+
T Consensus 487 V--~y~GH~~PVwdV~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghl--sDV~cv~FHPNs~Y~aTGSsD~---- 557 (707)
T KOG0263|consen 487 V--IYKGHLAPVWDVQFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHL--SDVDCVSFHPNSNYVATGSSDR---- 557 (707)
T ss_pred E--EecCCCcceeeEEec-CCceEEEecCCCceeeeeecccCCchhhhcccc--cccceEEECCcccccccCCCCc----
Confidence 4 344778899999999 789999999999999999999988888887776 7899999999999999999996
Q ss_pred cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL 342 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 342 (458)
++++||..++..++.|. +|.++|.+++|||+|++|++|+.||.|.+||+.+++.+..+.+|++.|.++.
T Consensus 558 ---------tVRlWDv~~G~~VRiF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls 626 (707)
T KOG0263|consen 558 ---------TVRLWDVSTGNSVRIFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS 626 (707)
T ss_pred ---------eEEEEEcCCCcEEEEec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence 99999999999999985 7999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
|+.+|..|++++.|..|++||+....
T Consensus 627 FS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 627 FSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999998643
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.7e-39 Score=269.02 Aligned_cols=290 Identities=19% Similarity=0.355 Sum_probs=244.9
Q ss_pred eeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCC------cc------ccccCCCceEEEEEecCCC
Q 012699 138 DFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPAS------RN------ATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~------~~------~~~~~~~~v~~~~~~~~~~ 204 (458)
...+.++ |..+|.+.+|+|-.. .+++++.|-+.++|++....... +. ........|++++|+ .++
T Consensus 170 ~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn-~~G 247 (524)
T KOG0273|consen 170 SKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN-NDG 247 (524)
T ss_pred cceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec-CCC
Confidence 3445555 999999999999765 89999999999999987521110 00 112234679999999 899
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
..|++|..||.+++|+.. |..+.++..|. ++|.++.|+..|.++++++.| +++.+||..++...
T Consensus 248 ~~LatG~~~G~~riw~~~-G~l~~tl~~Hk--gPI~slKWnk~G~yilS~~vD-------------~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 248 TLLATGSEDGEARIWNKD-GNLISTLGQHK--GPIFSLKWNKKGTYILSGGVD-------------GTTILWDAHTGTVK 311 (524)
T ss_pred CeEEEeecCcEEEEEecC-chhhhhhhccC--CceEEEEEcCCCCEEEeccCC-------------ccEEEEeccCceEE
Confidence 999999999999999976 44555555554 899999999999999999999 59999999999998
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
+.+.+.. .+-..+.|-.+ ..|++.+.|+.|+|+.+....++.++.+|.++|.++.|+|.+.+|+++|+|++++||.+
T Consensus 312 q~f~~~s--~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 312 QQFEFHS--APALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred Eeeeecc--CCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 8887543 34466778654 46888999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---------CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---------RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD 435 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~ 435 (458)
.... .......|...|..+.|+|.| ..+++++.|++|++||+..+..+..+..|..+|.+++
T Consensus 389 ~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 389 GQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred CCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 7543 222344678889999999965 4789999999999999999999999999999999999
Q ss_pred ECCCCCeEEEecCCCcEEEEeC
Q 012699 436 WHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 436 ~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|+|+|++||+|+.||.|.||+.
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccc
Confidence 9999999999999999999985
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.7e-40 Score=277.89 Aligned_cols=295 Identities=15% Similarity=0.258 Sum_probs=251.7
Q ss_pred eeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699 138 DFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI 216 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 216 (458)
+.+.++.||+..|+++.|.| .+.+|++++.|+.|+||++...... ......|..+|..++|+ ..+..+++++.|+.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-lrtf~gH~k~Vrd~~~s-~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-LRTFKGHRKPVRDASFN-NCGTSFLSASFDRFL 282 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-ehhhhcchhhhhhhhcc-ccCCeeeeeecceee
Confidence 56788999999999999999 8999999999999999999773322 33556788899999999 889999999999999
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
++||+++|++...+... ..+.++.|+|++ +.+++|+.+ +.|+.||+++++.++.+. .|-+.
T Consensus 283 KlwDtETG~~~~~f~~~---~~~~cvkf~pd~~n~fl~G~sd-------------~ki~~wDiRs~kvvqeYd--~hLg~ 344 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD---KVPTCVKFHPDNQNIFLVGGSD-------------KKIRQWDIRSGKVVQEYD--RHLGA 344 (503)
T ss_pred eeeccccceEEEEEecC---CCceeeecCCCCCcEEEEecCC-------------CcEEEEeccchHHHHHHH--hhhhh
Confidence 99999999999988876 478999999999 677777777 599999999999888764 67788
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
|..+.|-++|+++++.+.|+.++||+.+.+-++..... +.-...++..+|++++++.-+.|+.|.++.+...-+..
T Consensus 345 i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n--- 421 (503)
T KOG0282|consen 345 ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLN--- 421 (503)
T ss_pred eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccC---
Confidence 99999999999999999999999999988766654432 23356789999999999999999999999976532221
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEE
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQ 453 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~ 453 (458)
..+........+.-..+.|||||.+|++|..+|.+.+||.++.+....+..|..++..+.|+|... .+|+|+.||.|+
T Consensus 422 -kkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ik 500 (503)
T KOG0282|consen 422 -KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIK 500 (503)
T ss_pred -HhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeE
Confidence 112222223455677899999999999999999999999999988888889999999999999876 899999999999
Q ss_pred EEe
Q 012699 454 VMS 456 (458)
Q Consensus 454 iw~ 456 (458)
+|+
T Consensus 501 iwd 503 (503)
T KOG0282|consen 501 IWD 503 (503)
T ss_pred ecC
Confidence 996
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-39 Score=289.19 Aligned_cols=280 Identities=18% Similarity=0.291 Sum_probs=241.8
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
.+..++..-...++|..|++|+++||.|-.|..|++|.+...+... ..+...+ ..+=+.+.|-.+.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~----lk~~~~l----------~~~d~~sad~~~~ 434 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK----LKDASDL----------SNIDTESADVDVD 434 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc----ccchhhh----------ccccccccchhhh
Confidence 3555666666789999999999999999999999999987654321 1111111 1122334444566
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+.|..+.....++..|. ++|....|+|+.++|++++.|. ++++|.+.+..+.-.+. +|..+|.
T Consensus 435 ~~D~~~~~~~~~L~GH~--GPVyg~sFsPd~rfLlScSED~-------------svRLWsl~t~s~~V~y~--GH~~PVw 497 (707)
T KOG0263|consen 435 MLDDDSSGTSRTLYGHS--GPVYGCSFSPDRRFLLSCSEDS-------------SVRLWSLDTWSCLVIYK--GHLAPVW 497 (707)
T ss_pred hccccCCceeEEeecCC--CceeeeeecccccceeeccCCc-------------ceeeeecccceeEEEec--CCCccee
Confidence 77777777666666665 8999999999999999999994 99999999998888775 8889999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
.+.|+|.|-|||+++.|++.++|......+++.+.+|.+.|.|+.|+|+..|+++||.|.++++||+.++..+...
T Consensus 498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---- 573 (707)
T KOG0263|consen 498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---- 573 (707)
T ss_pred eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988665422
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+|..+|.+++|||+|++|++|+.|+.|.+||+.++..+..+.+|.+.|.++.|+.+|..||+||.|.+|++||+
T Consensus 574 -----~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 574 -----TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred -----cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999997
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-38 Score=258.41 Aligned_cols=288 Identities=16% Similarity=0.295 Sum_probs=252.8
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..+.+.+|.+.|.|+++.|-.+++++|+.|++++|||+.++++.. ....|-..|..++++ +...++++++.|+.|+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--tltGhi~~vr~vavS-~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--TLTGHIETVRGVAVS-KRHPYLFSAGEDKQVK 218 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--eecchhheeeeeeec-ccCceEEEecCCCeeE
Confidence 4667889999999999999999999999999999999999998753 344577889999999 7778999999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
.||++.++.++.+..|- +.|++++.+|.-..+++++.|. .+++||+++...+..+. +|..+|.
T Consensus 219 CwDLe~nkvIR~YhGHl--S~V~~L~lhPTldvl~t~grDs-------------t~RvWDiRtr~~V~~l~--GH~~~V~ 281 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHL--SGVYCLDLHPTLDVLVTGGRDS-------------TIRVWDIRTRASVHVLS--GHTNPVA 281 (460)
T ss_pred EEechhhhhHHHhcccc--ceeEEEeccccceeEEecCCcc-------------eEEEeeecccceEEEec--CCCCcce
Confidence 99999999988776655 7899999999999999999995 99999999988877764 8999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
.+.+.|-...+++|+.|++|++||++.++...++..|...+++++.+|....+++++.| .|+-|++..+.
T Consensus 282 ~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~--------- 351 (460)
T KOG0285|consen 282 SVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE--------- 351 (460)
T ss_pred eEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc---------
Confidence 99999988889999999999999999999999999999999999999999999999888 69999998653
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------CCCCcEEEEEECCCCCeEEEecCC
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------PHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
...+...+..-++.++...|| ++++|+.+|.+.+||.+++....... ..+..|.+.+|...|..|++|..|
T Consensus 352 f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead 430 (460)
T KOG0285|consen 352 FLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD 430 (460)
T ss_pred hhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC
Confidence 223345677888999988877 66789999999999998875544332 235679999999999999999999
Q ss_pred CcEEEEe
Q 012699 450 HSVQVMS 456 (458)
Q Consensus 450 g~v~iw~ 456 (458)
.+|++|.
T Consensus 431 KtIk~~k 437 (460)
T KOG0285|consen 431 KTIKMYK 437 (460)
T ss_pred cceEEEe
Confidence 9999996
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.3e-37 Score=271.86 Aligned_cols=287 Identities=23% Similarity=0.419 Sum_probs=247.3
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
+++++|.++|++++|+|++++|++++.||.+++|++.+.+... ....+...+..+.|. ++++.+++++.+|.+++||
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLKGHTGPVRDVAAS-ADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--EEecCCcceeEEEEC-CCCCEEEEEcCCCeEEEEE
Confidence 4677999999999999999999999999999999998776432 234456778899999 5668899999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
+.+++....+..+. ..+.++.|++++.++++++.+ |.+.+||+++++....+. .|...+.+++
T Consensus 80 ~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~~~~~--~~~~~i~~~~ 142 (289)
T cd00200 80 LETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRD-------------KTIKVWDVETGKCLTTLR--GHTDWVNSVA 142 (289)
T ss_pred cCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCC-------------CeEEEEECCCcEEEEEec--cCCCcEEEEE
Confidence 99887777666544 579999999998888887755 599999999877777665 5677899999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
|+|++.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.+++||++.......
T Consensus 143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~-------- 214 (289)
T cd00200 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT-------- 214 (289)
T ss_pred EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc--------
Confidence 999999999888899999999999999999999999999999999999999999999999999986433221
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+...+.+++|+|++.++++++.++.+++|++........+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 215 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 215 -LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 114556899999999998988888899999999998777777778999999999999999999999999999996
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=264.31 Aligned_cols=301 Identities=19% Similarity=0.256 Sum_probs=245.8
Q ss_pred CeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEc
Q 012699 133 PEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGT 211 (458)
Q Consensus 133 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 211 (458)
..++.+..+.+..|++.|.-+.||++|++|||++.|.+..+|++....... ......|..+|..+.|+ |+.++|++++
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wS-PDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWS-PDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEEC-CCCCeEEecC
Confidence 344556778899999999999999999999999999999999986544321 23445678899999999 7788899999
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
.+..+.+||+.+|.....+... ....+.+++|.||+..+++|+.|+ .+..||+..... ...+. .
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr-------------~i~~wdlDgn~~-~~W~g-v 352 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDR-------------TIIMWDLDGNIL-GNWEG-V 352 (519)
T ss_pred chHheeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCC-------------cEEEecCCcchh-hcccc-c
Confidence 9999999999999988877765 446899999999999999999995 999999876432 22211 1
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
....|.++++.+||+++++.+.|..|++|+.++...+..+. ...+|+++..|.+++++++.-.+..+.+||+.....+.
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~ 431 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR 431 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH
Confidence 22469999999999999999999999999998766554433 46789999999999999999999999999999653332
Q ss_pred EeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCC
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSAD 449 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d 449 (458)
++ ........+..-+|.- +..++++|++|+.|+||+..+++.+..+.||...|++++|+|..+ ++|+||+|
T Consensus 432 ------kY-~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 432 ------KY-FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred ------Hh-hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 11 1122333455556654 558999999999999999999999999999999999999999887 89999999
Q ss_pred CcEEEEeCC
Q 012699 450 HSVQVMSLS 458 (458)
Q Consensus 450 g~v~iw~l~ 458 (458)
|+||||.++
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999763
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-38 Score=257.89 Aligned_cols=290 Identities=18% Similarity=0.309 Sum_probs=252.1
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
.+.|.||..+|+.+-| .|+-.+.|+++.|.++++||+++++
T Consensus 101 ~~~l~g~r~~vt~v~~-hp~~~~v~~as~d~tikv~D~~tg~-------------------------------------- 141 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIF-HPSEALVVSASEDATIKVFDTETGE-------------------------------------- 141 (406)
T ss_pred hhhhhccccceeeeee-ccCceEEEEecCCceEEEEEccchh--------------------------------------
Confidence 5567778888888888 8888888888888888888877762
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
..+.|+||++.|..++|+..|++|++++.|-.+++||.
T Consensus 142 ------------------------------------------~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 142 ------------------------------------------LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred ------------------------------------------hhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 34467899999999999999999999999999999998
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
.+.. ........|...|.++.|- |.+.++++++.|.+|+.|++.++-++.++..+. .-+..+..+.||.++++++.
T Consensus 180 ~~~~-~c~ks~~gh~h~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~--ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 180 DTFF-RCIKSLIGHEHGVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHS--EWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred HHHH-HHHHHhcCcccceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCch--HhEEEEEecCCeeEEEecCC
Confidence 7642 2233456678889999999 557999999999999999999999999999887 57999999999999999999
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---------------CCEEEEEecCCeEEEEe
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---------------GKILAASAVDGMIHMFD 321 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~v~d 321 (458)
+. ++++|-+.++++...+. +|.-+|.|++|.|. +.++++++.|++|++||
T Consensus 256 dq-------------tl~vW~~~t~~~k~~lR--~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 256 DQ-------------TLRVWVVATKQCKAELR--EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred Cc-------------eEEEEEeccchhhhhhh--ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 95 99999999988877765 56667999999763 25899999999999999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL 401 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 401 (458)
+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+++.+... ..+.+...++++.|+.+..++
T Consensus 321 v~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk---------~~~ah~hfvt~lDfh~~~p~V 391 (406)
T KOG0295|consen 321 VSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK---------TLEAHEHFVTSLDFHKTAPYV 391 (406)
T ss_pred ccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee---------ccCCCcceeEEEecCCCCceE
Confidence 99999999999999999999999999999999999999999999875433 223678889999999999999
Q ss_pred EEEeCCccEEEEEc
Q 012699 402 LVTSGSVRAPIYQV 415 (458)
Q Consensus 402 ~~~~~~~~i~i~~~ 415 (458)
++|+-|..+++|.-
T Consensus 392 vTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 392 VTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccccceeeeeec
Confidence 99999999999963
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.2e-39 Score=267.16 Aligned_cols=248 Identities=19% Similarity=0.314 Sum_probs=217.4
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
..++.|..+|+++.|++++.+++||+.+|.|++|+..-.... .....+...|.+++|+| ++..+++++.||+|+|||
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk--~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK--IIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH--HhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence 346789999999999999999999999999999987544322 12223447899999994 778899999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
....+....+..+. -.|.++.|+|...++++++.|. .|++||.+++.++..+ ..|...|..+.
T Consensus 209 f~~~kee~vL~GHg--wdVksvdWHP~kgLiasgskDn-------------lVKlWDprSg~cl~tl--h~HKntVl~~~ 271 (464)
T KOG0284|consen 209 FRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGSKDN-------------LVKLWDPRSGSCLATL--HGHKNTVLAVK 271 (464)
T ss_pred ccCCchhheeccCC--CCcceeccCCccceeEEccCCc-------------eeEeecCCCcchhhhh--hhccceEEEEE
Confidence 99888877776665 6799999999999999999995 9999999999999876 47888999999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
|+|++++|++++.|..+++||+++.+.++++++|...++++.|+| ...+|.+|+.||.|..|.+..... ..
T Consensus 272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p--------~~ 343 (464)
T KOG0284|consen 272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP--------LG 343 (464)
T ss_pred EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccc--------cc
Confidence 999999999999999999999999999999999999999999999 566899999999999999983222 23
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
..+..|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 3456789999999999999999999999999999764
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-37 Score=252.88 Aligned_cols=299 Identities=16% Similarity=0.321 Sum_probs=260.2
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
..+.+.||...|.|+++ .|.+++++||+.|++++|||+.+++
T Consensus 143 l~rVi~gHlgWVr~vav-dP~n~wf~tgs~DrtikIwDlatg~------------------------------------- 184 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAV-DPGNEWFATGSADRTIKIWDLATGQ------------------------------------- 184 (460)
T ss_pred ehhhhhhccceEEEEee-CCCceeEEecCCCceeEEEEcccCe-------------------------------------
Confidence 46789999999999999 9999999999999999999988772
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
+..++.||-..|..+++|+-..||++++.|+.|+.||
T Consensus 185 -------------------------------------------LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 185 -------------------------------------------LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred -------------------------------------------EEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3446779999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA 255 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 255 (458)
++..+.+. ....|-+.|.+++.+ |.-+.|++|+.|.++++||+++...+..+..|. .+|..+.+.|....+++++
T Consensus 222 Le~nkvIR--~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 222 LEYNKVIR--HYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASVMCQPTDPQVITGS 296 (460)
T ss_pred chhhhhHH--HhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeEEeecCCCceEEec
Confidence 99887654 345566899999999 667889999999999999999999999998877 7899999999999999999
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD 335 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 335 (458)
.| ++|++||++.++....+. .|...+.+++.+|....|++++.| .|+-|++..+..+..+.+|.
T Consensus 297 ~D-------------~tvrlWDl~agkt~~tlt--~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~ 360 (460)
T KOG0285|consen 297 HD-------------STVRLWDLRAGKTMITLT--HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN 360 (460)
T ss_pred CC-------------ceEEEeeeccCceeEeee--cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc
Confidence 99 499999999999888775 677889999999999999998877 59999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
..|++++.+.|+ ++++|++.|.+.+||.+++-........ ........+..|.+.+|...|..|+++..|.+|++|.-
T Consensus 361 ~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ke 438 (460)
T KOG0285|consen 361 AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKE 438 (460)
T ss_pred ceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc-ccCCccccccceeEEeecccCceEEeccCCcceEEEec
Confidence 999999998887 8889999999999999986443322111 11222345567899999999999999999999999987
Q ss_pred cCC
Q 012699 416 RGH 418 (458)
Q Consensus 416 ~~~ 418 (458)
+..
T Consensus 439 De~ 441 (460)
T KOG0285|consen 439 DEH 441 (460)
T ss_pred ccc
Confidence 654
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-36 Score=300.63 Aligned_cols=293 Identities=14% Similarity=0.281 Sum_probs=237.5
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC----C-CccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP----A-SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..|.+.|.+++|+|++++||+|+.|++|+||++..... . .......+...+.+++|+|..+.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 456999999999999999999999999999999754211 0 01112234567899999977788999999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
+||+.+++.+..+..+. ..|.+++|+| ++..+++++.| |.|++||++++.....+.. ...+
T Consensus 559 lWd~~~~~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~~~~~~~~~---~~~v 620 (793)
T PLN00181 559 VWDVARSQLVTEMKEHE--KRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQGVSIGTIKT---KANI 620 (793)
T ss_pred EEECCCCeEEEEecCCC--CCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCCcEEEEEec---CCCe
Confidence 99999998888777655 6899999997 67899999988 5999999999888877752 2468
Q ss_pred EEEEEc-cCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 297 TSLCFN-HNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 297 ~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
.++.|+ +++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|. ++.+|++++.|++|++||+.......
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~--- 696 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGI--- 696 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcccc---
Confidence 999995 579999999999999999998765 567788999999999996 67799999999999999997532100
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-------------cCCCCCcEEEEEECCCCC
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR-------------TLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-------------~~~h~~~v~~~~~~~~~~ 441 (458)
..........|...+..++|+|++++|++|+.|+.+++|+......... ...|...|.+++|+|++.
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~ 776 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS 776 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC
Confidence 0001112335667788999999999999999999999999765432211 123567899999999999
Q ss_pred eEEEecCCCcEEEEeC
Q 012699 442 MFLTGSADHSVQVMSL 457 (458)
Q Consensus 442 ~l~s~~~dg~v~iw~l 457 (458)
.|++|+.||.|+||++
T Consensus 777 ~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 TLVAANSTGNIKILEM 792 (793)
T ss_pred eEEEecCCCcEEEEec
Confidence 9999999999999997
No 36
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-37 Score=241.84 Aligned_cols=289 Identities=18% Similarity=0.300 Sum_probs=250.2
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
+.+++|.+.|.+++|+.+|..|++|+.|+++++|+++............|+..|-.++|+|+...++++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999988866655666677889999999999999999999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
++.+++...+.... .-..+.|+|++.+++.+..+. .|.+.|.++.+.....++ ...++.++
T Consensus 94 ~r~~k~~~~i~~~~---eni~i~wsp~g~~~~~~~kdD-------------~it~id~r~~~~~~~~~~---~~e~ne~~ 154 (313)
T KOG1407|consen 94 IRSGKCTARIETKG---ENINITWSPDGEYIAVGNKDD-------------RITFIDARTYKIVNEEQF---KFEVNEIS 154 (313)
T ss_pred eccCcEEEEeeccC---cceEEEEcCCCCEEEEecCcc-------------cEEEEEecccceeehhcc---cceeeeee
Confidence 99999998877664 345689999999999999986 999999998887776543 34578899
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
|+.++.+++.....|.|.|.....-+++..+++|.....||.|+|+|++||+|+.|..+.+||+...-.. +
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~-------R-- 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICE-------R-- 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhh-------e--
Confidence 9988888888777899999999999999999999999999999999999999999999999999864222 2
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC---------Cc
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD---------HS 451 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------g~ 451 (458)
....+.-+|..+.||.||++||+|++|..|-|-+++++.++.. ..+.++...++|+|...+||-++.| |.
T Consensus 226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e-I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~ 304 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE-IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGT 304 (313)
T ss_pred eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE-eeccCCceeEEecCCCceeeEEecCCCCccccccce
Confidence 1224667899999999999999999999999999999866544 3578899999999999999987654 67
Q ss_pred EEEEeCC
Q 012699 452 VQVMSLS 458 (458)
Q Consensus 452 v~iw~l~ 458 (458)
|++|-++
T Consensus 305 vKiFG~~ 311 (313)
T KOG1407|consen 305 VKIFGLS 311 (313)
T ss_pred eEEecCC
Confidence 8888653
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=278.00 Aligned_cols=294 Identities=21% Similarity=0.395 Sum_probs=250.9
Q ss_pred eeeeccC-CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 140 LETFLGH-TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 140 ~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
...+.+| ...|.++.|+|+|+++++++.|+.+++|+..............|...|..++|+ +++.++++++.|++|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs-~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFS-PDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEEC-CCCcEEEEecCCceEEE
Confidence 4455454 888999999999999999999999999999666511111225677899999999 78889999999999999
Q ss_pred EEc-CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 219 WNV-DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 219 wd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
||+ ..+..+.++..|. ..|++++|+|+++.+++++.| ++|++||++++++...+. .|...|+
T Consensus 230 wd~~~~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~--~hs~~is 292 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSDD-------------GTVRIWDVRTGECVRKLK--GHSDGIS 292 (456)
T ss_pred eeccCCCeEEEEecCCC--CceEEEEecCCCCEEEEecCC-------------CcEEEEeccCCeEEEeee--ccCCceE
Confidence 999 5557888888666 789999999999999999998 599999999999988875 7888999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCC--eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSA--ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
+++|++++.+|++++.|+.|++||+.++. ++..+..+..+ ++++.|+|+++++++++.|+.+++||+.....+...
T Consensus 293 ~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~ 372 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY 372 (456)
T ss_pred EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence 99999999999999999999999999998 56777776665 999999999999999999999999999976554432
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCCeEEEec--CCC
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLPMFLTGS--ADH 450 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~dg 450 (458)
..... ....+.+...++.++++++|+.|+.|++|++.+...+..+.+| ...+..++|+|..+++++++ .|+
T Consensus 373 ~~~~~------~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 373 TGHSN------LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred cccCC------cceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 21111 0134556666889999999999999999999998888888999 89999999999999999998 789
Q ss_pred cEEEEeC
Q 012699 451 SVQVMSL 457 (458)
Q Consensus 451 ~v~iw~l 457 (458)
.+++|..
T Consensus 447 ~~~~w~~ 453 (456)
T KOG0266|consen 447 LIRLWKY 453 (456)
T ss_pred eEEEecC
Confidence 9999975
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-37 Score=242.34 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=239.0
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.++||..+++.+.++.+|.+|++|+.|.+..+|--.+++.+. ....|.+.|+++..+ .+...+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--ty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--TYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--eecCCCceEEEEEec-CCcceeeeccccceeEEEEc
Confidence 467999999999999999999999999999999876776543 455688999999998 78899999999999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCC
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPP 294 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~ 294 (458)
++|+++..++.. .+|..+.|++++++++....+... ..+.|.++|++. .++...+. .+..
T Consensus 82 ~tGk~la~~k~~---~~Vk~~~F~~~gn~~l~~tD~~mg--------~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~s 148 (327)
T KOG0643|consen 82 ETGKQLATWKTN---SPVKRVDFSFGGNLILASTDKQMG--------YTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDS 148 (327)
T ss_pred CCCcEEEEeecC---CeeEEEeeccCCcEEEEEehhhcC--------cceEEEEEEccCChhhhcccCceEEec--CCcc
Confidence 999999998877 589999999999988887765421 226899999983 33444443 4457
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
.++.+-|.|-+++|++|..||.|..||+++++ .+..-+.|...|+.++++||..++++++.|.+-++||+.+.......
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 79999999999999999999999999999974 45666789999999999999999999999999999999976433321
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE--------------EEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA--------------PIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i--------------~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
....++++.+++|-...++.|++.... ++|++-..+++.+..+|-++|++++|||+
T Consensus 229 ----------~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 229 ----------TTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD 298 (327)
T ss_pred ----------eecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC
Confidence 234568999999988777776654322 23333334455566689999999999999
Q ss_pred CCeEEEecCCCcEEEEeC
Q 012699 440 LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 440 ~~~l~s~~~dg~v~iw~l 457 (458)
|+..++|++||.||+..+
T Consensus 299 GksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred CcccccCCCCceEEEEEe
Confidence 999999999999999765
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.9e-36 Score=238.37 Aligned_cols=292 Identities=16% Similarity=0.262 Sum_probs=246.4
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
+.+-.+.||...|..+.| +|+|.++|||+.|..|.+|+..... +
T Consensus 38 ap~m~l~gh~geI~~~~F-~P~gs~~aSgG~Dr~I~LWnv~gdc------------------------e----------- 81 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKF-HPDGSCFASGGSDRAIVLWNVYGDC------------------------E----------- 81 (338)
T ss_pred chhhhcCCCcceEEEEEE-CCCCCeEeecCCcceEEEEeccccc------------------------c-----------
Confidence 345678899999999999 9999999999999999999854320 0
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
-...+++|.++|..+.|.+|++.|++++.|.+++.|
T Consensus 82 --------------------------------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 82 --------------------------------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred --------------------------------------------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 122456999999999999999999999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
|+++++... ....|..-++.+.-...+..++.+++.||++++||+++...++++... .+++++.|...+..+.++
T Consensus 118 D~~tG~~~r--k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k---yqltAv~f~d~s~qv~sg 192 (338)
T KOG0265|consen 118 DAETGKRIR--KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK---YQLTAVGFKDTSDQVISG 192 (338)
T ss_pred ecccceeee--hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc---eeEEEEEecccccceeec
Confidence 999998765 334466677777755456678889999999999999999888777554 479999999999999999
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC----Cceeee
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA----GLQITG 330 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~ 330 (458)
+-| +.|++||++.+.....+. +|...|+.+..+|+|.++.+-+.|.++++||++. .+++..
T Consensus 193 gId-------------n~ikvWd~r~~d~~~~ls--Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~i 257 (338)
T KOG0265|consen 193 GID-------------NDIKVWDLRKNDGLYTLS--GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKI 257 (338)
T ss_pred ccc-------------CceeeeccccCcceEEee--cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEE
Confidence 999 499999999888887764 8889999999999999999999999999999975 244666
Q ss_pred eeCCC----CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 331 WPAHD----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 331 ~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
+.+|. .....++|+|+++.+.+|+.|..+++||....+.+. ...+|...|..++|+|...+|.+++.
T Consensus 258 f~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly---------klpGh~gsvn~~~Fhp~e~iils~~s 328 (338)
T KOG0265|consen 258 FQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY---------KLPGHYGSVNEVDFHPTEPIILSCSS 328 (338)
T ss_pred eecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE---------EcCCcceeEEEeeecCCCcEEEEecc
Confidence 76654 345678999999999999999999999998654433 33478899999999999999999999
Q ss_pred CccEEEEEc
Q 012699 407 SVRAPIYQV 415 (458)
Q Consensus 407 ~~~i~i~~~ 415 (458)
|.+|++=.+
T Consensus 329 dk~i~lgei 337 (338)
T KOG0265|consen 329 DKTIYLGEI 337 (338)
T ss_pred CceeEeecc
Confidence 999987543
No 40
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=252.55 Aligned_cols=297 Identities=15% Similarity=0.269 Sum_probs=243.0
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
+..+.|..|.+.|.-+.| |++|+||||++.|.+..||.+....
T Consensus 215 qt~qil~~htdEVWfl~F-S~nGkyLAsaSkD~Taiiw~v~~d~------------------------------------ 257 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQF-SHNGKYLASASKDSTAIIWIVVYDV------------------------------------ 257 (519)
T ss_pred hhhhhHhhCCCcEEEEEE-cCCCeeEeeccCCceEEEEEEecCc------------------------------------
Confidence 346788899999999999 9999999999999999999754330
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
.++..+++.+|..+|..+.||||.++|++|+.|..+++|
T Consensus 258 -----------------------------------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 258 -----------------------------------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred -----------------------------------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 022667889999999999999999999999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
|+.++......... ++..+.+++|. |++..+++|+.|+.+..||++.... ...+.... ..|.+++..+||+.+++.
T Consensus 297 Dv~tgd~~~~y~~~-~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~-~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSG-LGFSVSSCAWC-PDGFRFVTGSPDRTIIMWDLDGNIL-GNWEGVRD-PKVHDLAITYDGKYVLLV 372 (519)
T ss_pred cCCcchhhhhcccC-cCCCcceeEEc-cCCceeEecCCCCcEEEecCCcchh-hccccccc-ceeEEEEEcCCCcEEEEE
Confidence 99999876432222 45789999999 7888999999999999999986542 22222221 569999999999999999
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
..|. .|++++.++......+. ...+|+++++|.+++++++.-.+..+++||++..+.+..+.+|
T Consensus 373 ~~d~-------------~i~l~~~e~~~dr~lis---e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 373 TVDK-------------KIRLYNREARVDRGLIS---EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred eccc-------------ceeeechhhhhhhcccc---ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 8885 99999998766655443 3357999999999999999999999999999999999999999
Q ss_pred CCCe--EEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccE
Q 012699 335 DSAI--SSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRA 410 (458)
Q Consensus 335 ~~~v--~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i 410 (458)
...- ..-+|-- +..++++||.|+.|+||+..+++.+.. ..+|...+++++|+|.. .++|+++.||+|
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~---------LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV---------LSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe---------ecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 7643 3334543 557999999999999999998765443 34688899999999954 678899999999
Q ss_pred EEEEccCC
Q 012699 411 PIYQVRGH 418 (458)
Q Consensus 411 ~i~~~~~~ 418 (458)
+||.....
T Consensus 508 RIWg~~~~ 515 (519)
T KOG0293|consen 508 RIWGPSDN 515 (519)
T ss_pred EEecCCcc
Confidence 99987543
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-36 Score=259.78 Aligned_cols=286 Identities=12% Similarity=0.168 Sum_probs=246.9
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
+++..|+..|.++.| .|...+++.+-..|.+.||+++++.....+.- .+-...+..+-.+..++++|+.|..|++
T Consensus 7 rk~~~rSdRVKsVd~-HPtePw~la~LynG~V~IWnyetqtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDF-HPTEPWILAALYNGDVQIWNYETQTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred hHhhccCCceeeeec-CCCCceEEEeeecCeeEEEecccceeeeeeee----cccchhhheeeeccceEEEecCCceEEE
Confidence 456679999999999 99999999999999999999999976633321 1222234556668899999999999999
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
++..... .++.|..|.+.|+|++.+|...+++|+|.|-+|++||.+
T Consensus 82 fnynt~e----------------------------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 82 FNYNTGE----------------------------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred Eecccce----------------------------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 9987744 788999999999999999999999999999999999997
Q ss_pred CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--CeEEEee
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE--PIFVSAA 255 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~ 255 (458)
..=. .......|.+-|.+++|+|.+.+.+++++-|++|++|.+.+..+..++..|. ..|.++.+-+.+ +++++++
T Consensus 128 ~~wa-~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 128 NEWA-CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred Ccee-eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecC
Confidence 6432 2345567888999999999999999999999999999999999999888766 789999998755 6999999
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD 335 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 335 (458)
.|. .+++||.++..+++++. +|...|..+.|+|.-..+++|++||+++||+..+-+...++.-.-
T Consensus 205 DD~-------------tiKvWDyQtk~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl 269 (794)
T KOG0276|consen 205 DDL-------------TIKVWDYQTKSCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL 269 (794)
T ss_pred CCc-------------eEEEeecchHHHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC
Confidence 885 99999999999998874 788889999999999999999999999999999888888888778
Q ss_pred CCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 336 SAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 336 ~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
+.++|++-.+.+..++.|.++|.|.
T Consensus 270 eRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 270 ERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred ceEEEEeecCCCCeEEEeccCCcEE
Confidence 8999999999888888888777654
No 42
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=262.42 Aligned_cols=287 Identities=17% Similarity=0.244 Sum_probs=225.9
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecC----------CCeEEEEEcCCCcEEEE
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECK----------SDRLLLIGTADGGIKAW 219 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~~l~~~~~dg~i~~w 219 (458)
.++.|+|....|.+...|..++|||++.-.... ......|...|+.+.--|- ....+++++.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 467899888899999999999999998765432 2234556677777765431 12358999999999999
Q ss_pred EcCCCceeeecc-----------------------------------CCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699 220 NVDAKRVVCDLN-----------------------------------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN 264 (458)
Q Consensus 220 d~~~~~~~~~~~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (458)
|++.+..-..+. .-+....+.+++++|++++|++|...
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~------- 480 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG------- 480 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc-------
Confidence 997632111100 00011348899999999999999887
Q ss_pred eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCC----
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDS---- 336 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~---- 336 (458)
|.+++|++...+....+ +.|...|.|+.|+. ..++|++++.|..|.|||... -.++.++.+|..
T Consensus 481 ------GnlrVy~Lq~l~~~~~~--eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 481 ------GNLRVYDLQELEYTCFM--EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred ------CceEEEEehhhhhhhhe--ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 69999999987766655 57889999999986 357899999999999999753 223333333333
Q ss_pred ---------------------------------------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 337 ---------------------------------------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 337 ---------------------------------------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
.+..++..|..+++++++.|..|+|||+.++++..
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 34555666667888999999999999999887654
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
.+.....+.+....+...|.|-||++.+.|.++.++|..+++.+.+..||...|+.+.|.+|.+.|++.+.||+
T Consensus 633 ------~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 633 ------SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred ------eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 44455677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCC
Q 012699 452 VQVMSLS 458 (458)
Q Consensus 452 v~iw~l~ 458 (458)
|.||.++
T Consensus 707 IFvW~lp 713 (1080)
T KOG1408|consen 707 IFVWKLP 713 (1080)
T ss_pred EEEEECc
Confidence 9999874
No 43
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-36 Score=230.39 Aligned_cols=287 Identities=14% Similarity=0.233 Sum_probs=240.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
..+.+..|.++|..+.|+-||+|.++|+.|.+|++|+...+.++. ....|+.+|..++.+ .++..+++++.|..+.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--tYsghG~EVlD~~~s-~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--TYSGHGHEVLDAALS-SDNSKFASCGGDKAVQV 85 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--eecCCCceeeecccc-ccccccccCCCCceEEE
Confidence 556788999999999999999999999999999999998887764 455688899999988 77888999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||+++|+..+.+..|. ..|..+.|+.+...+++++.|. .+++||.++....+...+......|.+
T Consensus 86 wDV~TGkv~Rr~rgH~--aqVNtV~fNeesSVv~SgsfD~-------------s~r~wDCRS~s~ePiQildea~D~V~S 150 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHL--AQVNTVRFNEESSVVASGSFDS-------------SVRLWDCRSRSFEPIQILDEAKDGVSS 150 (307)
T ss_pred EEcccCeeeeeccccc--ceeeEEEecCcceEEEeccccc-------------eeEEEEcccCCCCccchhhhhcCceeE
Confidence 9999999999999887 7899999999999999999995 999999998666555555667778998
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+..+ +..|++|+.||+++.||++.|+....+- ..+|+++.|+++++..+.++.|+++++.|-.+++.+..
T Consensus 151 i~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s------ 220 (307)
T KOG0316|consen 151 IDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS------ 220 (307)
T ss_pred EEec--ccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH------
Confidence 8886 5679999999999999999998776654 45899999999999999999999999999988653321
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc-EEEEEECCCCCeEEEecCCCcEEEE
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA-ITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.........-...+++.....+++|++||.+++||+.....+..+..|... |.+++++|.-..|+++... .+..|
T Consensus 221 -YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 221 -YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred -hcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 111112223345678888899999999999999999988777777777776 8999999998877777644 34444
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-35 Score=229.23 Aligned_cols=299 Identities=17% Similarity=0.248 Sum_probs=238.7
Q ss_pred HhhccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 15 AQLSRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
..++.+++|+..+-.+++ +|- |.+||||+.|+.++||+...+..
T Consensus 5 ~~~~~~~gh~~r~W~~aw-hp~~g~ilAscg~Dk~vriw~~~~~~s---------------------------------- 49 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAW-HPGKGVILASCGTDKAVRIWSTSSGDS---------------------------------- 49 (312)
T ss_pred eeEEeecCCCCcEEEEEe-ccCCceEEEeecCCceEEEEecCCCCc----------------------------------
Confidence 356789999999999999 777 99999999999999998653300
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFSSSGNNIASASVDGTVR 172 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 172 (458)
|. +...+ .+|+..|++++|+|.|++|++++.|.++.
T Consensus 50 ----~~---------------------------------------ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 50 ----WT---------------------------------------CKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred ----EE---------------------------------------EEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 00 12222 37999999999999999999999999999
Q ss_pred EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCC
Q 012699 173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEP 249 (458)
Q Consensus 173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~ 249 (458)
||.-..++.........|..+|.+++|+ .++++|++++.|..+-+|.+..+. +...++.|. ..|..+.|+|...
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht--qDVK~V~WHPt~d 163 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT--QDVKHVIWHPTED 163 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc--ccccEEEEcCCcc
Confidence 9987766655555666788999999999 899999999999999999998544 344454444 6799999999999
Q ss_pred eEEEeecccCCCCcceeeccceeEEEEECC-CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee
Q 012699 250 IFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 328 (458)
+|++++.|. +|++|+-. ...-....++.+|...|.+++|+|.|..|++++.|++++||-+.+.-.
T Consensus 164 lL~S~SYDn-------------TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~- 229 (312)
T KOG0645|consen 164 LLFSCSYDN-------------TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS- 229 (312)
T ss_pred eeEEeccCC-------------eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc-
Confidence 999999995 99999876 444444445568888999999999999999999999999998763321
Q ss_pred eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccC-CCEEEEEeC
Q 012699 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVN-GRRLLVTSG 406 (458)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~ 406 (458)
..|..++..+.|. ++ .|++++.|+.|++|.-... ..+.+.. .......|...|++++|.|. ..+|++++.
T Consensus 230 ---~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l---~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D 301 (312)
T KOG0645|consen 230 ---GMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNL---LAKKEGAHEVDVNSVQWNPKVSNRLASGGD 301 (312)
T ss_pred ---hhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHH---HHhhhcccccccceEEEcCCCCCceeecCC
Confidence 2467889999998 44 8999999999999987642 1111110 11123457778999999995 789999999
Q ss_pred CccEEEEEcc
Q 012699 407 SVRAPIYQVR 416 (458)
Q Consensus 407 ~~~i~i~~~~ 416 (458)
||.+++|.+.
T Consensus 302 DG~v~~W~l~ 311 (312)
T KOG0645|consen 302 DGIVNFWELE 311 (312)
T ss_pred CceEEEEEec
Confidence 9999999874
No 45
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.7e-37 Score=248.56 Aligned_cols=250 Identities=20% Similarity=0.340 Sum_probs=206.1
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
+++.|.||++.|.|+.|. .+.|++|+.|.+|++||+++++++. ..+.|...|..+.|+ +.++++++.|.++.+
T Consensus 229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~--tlihHceaVLhlrf~---ng~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN--TLIHHCEAVLHLRFS---NGYMVTCSKDRSIAV 301 (499)
T ss_pred HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh--HHhhhcceeEEEEEe---CCEEEEecCCceeEE
Confidence 566788999999999994 5599999999999999999999865 456677899999997 678999999999999
Q ss_pred EEcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 219 WNVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 219 wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
||+.+...+ ..+..+ ...|..+.|+. +++++++.|+ +|++|++.+.+.+.++ .+|...
T Consensus 302 Wdm~sps~it~rrVLvGH--rAaVNvVdfd~--kyIVsASgDR-------------TikvW~~st~efvRtl--~gHkRG 362 (499)
T KOG0281|consen 302 WDMASPTDITLRRVLVGH--RAAVNVVDFDD--KYIVSASGDR-------------TIKVWSTSTCEFVRTL--NGHKRG 362 (499)
T ss_pred EeccCchHHHHHHHHhhh--hhheeeecccc--ceEEEecCCc-------------eEEEEeccceeeehhh--hccccc
Confidence 999876532 223333 36788887764 4999999986 9999999999998876 488888
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
|.|+.+ .++++++|+.|.+|++||+..|.+++.+++|+.-|.++.|. .+.+++|+.||+|++||+.....+.....
T Consensus 363 IAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~ 438 (499)
T KOG0281|consen 363 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPAS 438 (499)
T ss_pred ceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCccccc
Confidence 988887 48899999999999999999999999999999999999995 56899999999999999987655433222
Q ss_pred CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
..-+.....+.+.|..+.| |...+++.+.|.+|.|||+.....
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 2223344456777888888 566888999999999999977643
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.6e-37 Score=258.23 Aligned_cols=293 Identities=18% Similarity=0.303 Sum_probs=246.6
Q ss_pred HHhhccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699 14 EAQLSRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN 92 (458)
Q Consensus 14 ~~~~~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (458)
...++.+.||+..|+++.| .| .+.+|+|++.|+.++||++....
T Consensus 204 kk~~~~~~gH~kgvsai~~-fp~~~hLlLS~gmD~~vklW~vy~~~---------------------------------- 248 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQW-FPKKGHLLLSGGMDGLVKLWNVYDDR---------------------------------- 248 (503)
T ss_pred HhheeeccCCccccchhhh-ccceeeEEEecCCCceEEEEEEecCc----------------------------------
Confidence 3467899999999999999 77 88899999999999998754320
Q ss_pred CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699 93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVR 172 (458)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 172 (458)
.+++++.||..+|..++|+++|..++|++.|+.++
T Consensus 249 ---------------------------------------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 249 ---------------------------------------------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred ---------------------------------------------ceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 17788999999999999999999999999999999
Q ss_pred EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699 173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
+||+++++... .......+.++.|+|.+.+.+++|+.|+.|+.||+++++.++.+..+- +.+..+.|-+++..++
T Consensus 284 lwDtETG~~~~---~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hL--g~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 284 LWDTETGQVLS---RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHL--GAILDITFVDEGRRFI 358 (503)
T ss_pred eeccccceEEE---EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhh--hheeeeEEccCCceEe
Confidence 99999998764 344567789999998777999999999999999999999888877665 7899999999999999
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC---ceee
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG---LQIT 329 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---~~~~ 329 (458)
+++.+. .+++|+.+...+++.+. ....-...++..+|+++++++-+.|..|.+|.+... ....
T Consensus 359 ssSDdk-------------s~riWe~~~~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 359 SSSDDK-------------SVRIWENRIPVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeccCc-------------cEEEEEcCCCccchhhc-chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 999984 99999999877766553 222334788999999999999999999999997542 2234
Q ss_pred eeeCCC--CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeC
Q 012699 330 GWPAHD--SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSG 406 (458)
Q Consensus 330 ~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~ 406 (458)
.+.+|. +.-..+.|||||++|++|+.||.+.+||.++.+ .+.....+...+..+.|+|.. ..+|+++.
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------l~~~lkah~~~ci~v~wHP~e~Skvat~~w 495 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------LVSKLKAHDQPCIGVDWHPVEPSKVATCGW 495 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------hhhccccCCcceEEEEecCCCcceeEeccc
Confidence 566775 455678999999999999999999999999654 333445677889999999965 67888999
Q ss_pred CccEEEEE
Q 012699 407 SVRAPIYQ 414 (458)
Q Consensus 407 ~~~i~i~~ 414 (458)
+|.|++|+
T Consensus 496 ~G~Ikiwd 503 (503)
T KOG0282|consen 496 DGLIKIWD 503 (503)
T ss_pred CceeEecC
Confidence 99999996
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.1e-34 Score=252.88 Aligned_cols=288 Identities=23% Similarity=0.397 Sum_probs=243.1
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+++|++|..+|++++| ++++++|++++.|+.+.+|+...+.
T Consensus 2 ~~~~~~h~~~i~~~~~-~~~~~~l~~~~~~g~i~i~~~~~~~-------------------------------------- 42 (289)
T cd00200 2 RRTLKGHTGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGE-------------------------------------- 42 (289)
T ss_pred chHhcccCCCEEEEEE-cCCCCEEEEeecCcEEEEEEeeCCC--------------------------------------
Confidence 4678899999999999 9999999999999999999876441
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
....+.+|...+..+.|+|++++|++++.||.+++|++
T Consensus 43 ------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 43 ------------------------------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred ------------------------------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 11234568888999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
.+++... ....+...+.++.|+ +++.++++++.+|.+.+||+.+++....+..+. ..+.++.++|++.+++++..
T Consensus 81 ~~~~~~~--~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~ 155 (289)
T cd00200 81 ETGECVR--TLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSSQ 155 (289)
T ss_pred CcccceE--EEeccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEcC
Confidence 8765433 233455689999999 557788888889999999999888877776443 67999999999888888775
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
+ |.+++||+++++....+. .+...+.++.|+|+++.+++++.++.|++||+++++.+..+..|..
T Consensus 156 ~-------------~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 220 (289)
T cd00200 156 D-------------GTIKLWDLRTGKCVATLT--GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN 220 (289)
T ss_pred C-------------CcEEEEEccccccceeEe--cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC
Confidence 5 599999999888877775 5666899999999999999999999999999999999888888999
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~ 414 (458)
.+.+++|+|++.++++++.|+.+++||+.+....... ..+...+.+++|+|++++|++++.|+.+++|+
T Consensus 221 ~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL---------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc---------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999888888888999999999865433221 14566799999999999999999999999996
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.9e-35 Score=269.35 Aligned_cols=293 Identities=21% Similarity=0.322 Sum_probs=246.6
Q ss_pred ccccCC-CcceeeeeeccCCCceeeeeecCcceEEecccccc--cc-ccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 18 SRLKNN-SETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA--CA-TTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 18 ~~l~~h-~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
+.+.+| ...|.|+.| +++|+++++++.|+.+++|+..... .. ....|...+.+ ++++.+++++++++.|+
T Consensus 152 ~~~~~~~~~sv~~~~f-s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~-----~~fs~d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDF-SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSD-----VAFSPDGSYLLSGSDDK 225 (456)
T ss_pred eeecccccCceEEEEE-cCCCCeEEEccCCCcEEEeecccccchhhccccccccceee-----eEECCCCcEEEEecCCc
Confidence 344444 888999999 9999999999999999999996665 33 23344445555 77777888999999999
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 173 (458)
++++|++.... ..++++++|...|++++|+|+++++++|+.|++|+|
T Consensus 226 tiriwd~~~~~---------------------------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvri 272 (456)
T KOG0266|consen 226 TLRIWDLKDDG---------------------------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRI 272 (456)
T ss_pred eEEEeeccCCC---------------------------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEE
Confidence 99999983321 177889999999999999999999999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeE
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIF 251 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (458)
||++++++.. ....|...|.+++|+ +++++|++++.|+.|++||+.++. +...+.......++..+.|+|++.++
T Consensus 273 Wd~~~~~~~~--~l~~hs~~is~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 273 WDVRTGECVR--KLKGHSDGISGLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred EeccCCeEEE--eeeccCCceEEEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 9999977654 455678899999999 889999999999999999999999 55666655542268999999999999
Q ss_pred EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP-PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330 (458)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 330 (458)
+++..++ .+++||+..+.....+...... ..+.+...++.+.++++|+.|+.|++||+.++..+..
T Consensus 350 l~~~~d~-------------~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 350 LSASLDR-------------TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR 416 (456)
T ss_pred EEecCCC-------------eEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence 9999984 9999999998888877533221 1344556678999999999999999999999999999
Q ss_pred eeCC-CCCeEEEEEcCCCCEEEEec--CCCeEEEEecc
Q 012699 331 WPAH-DSAISSILFGPDETSIFSLG--SDGKIIEWSLQ 365 (458)
Q Consensus 331 ~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 365 (458)
+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 417 l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 417 LEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999 89999999999999999998 68999999754
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-35 Score=255.22 Aligned_cols=287 Identities=14% Similarity=0.229 Sum_probs=249.6
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
..+.+..|+.+|.++.|+|....++++-.+|.|.||+.++..+... ..-...+|.+..|- ...+.+++|+.|..|++
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks--feV~~~PvRa~kfi-aRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS--FEVSEVPVRAAKFI-ARKNWIVTGSDDMQIRV 81 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee--eeecccchhhheee-eccceEEEecCCceEEE
Confidence 4456677999999999999999999999999999999998877642 23346788999998 77899999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~ 297 (458)
|+..+++.+..+..|. ..+++++.+|..+++++++.|. .|++||.+. +.+.++ +++|...|+
T Consensus 82 fnynt~ekV~~FeAH~--DyIR~iavHPt~P~vLtsSDDm-------------~iKlW~we~~wa~~qt--feGH~HyVM 144 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHS--DYIRSIAVHPTLPYVLTSSDDM-------------TIKLWDWENEWACEQT--FEGHEHYVM 144 (794)
T ss_pred EecccceeeEEeeccc--cceeeeeecCCCCeEEecCCcc-------------EEEEeeccCceeeeeE--EcCcceEEE
Confidence 9999999999999887 5799999999999999999996 999999976 334444 468888999
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 298 SLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 298 ~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
+++|+| |.+.+++++.|++|+||.+.+..+..++.+|...|+|+.+-+ |..+|++|++|.++++||..+...
T Consensus 145 qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C----- 219 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC----- 219 (794)
T ss_pred EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----
Confidence 999999 578999999999999999999999999999999999999987 447999999999999999997643
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
....++|...|..+.|+|.-..+++|++||+++||+..+-+....+.-....|++++-.+.++.++.|.++|.|.+
T Consensus 220 ----V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 220 ----VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 2344578889999999999999999999999999999887555444445678999999999999999998887754
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.9e-34 Score=281.09 Aligned_cols=302 Identities=13% Similarity=0.210 Sum_probs=236.0
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
.+..|...|.+++| +++|++||+|+.|++++||+...... . .. .+
T Consensus 478 ~~~~~~~~V~~i~f-s~dg~~latgg~D~~I~iwd~~~~~~-----------~-----------~~---------~~--- 522 (793)
T PLN00181 478 DLLNSSNLVCAIGF-DRDGEFFATAGVNKKIKIFECESIIK-----------D-----------GR---------DI--- 522 (793)
T ss_pred cccCCCCcEEEEEE-CCCCCEEEEEeCCCEEEEEECCcccc-----------c-----------cc---------cc---
Confidence 35569999999999 99999999999999999998643200 0 00 00
Q ss_pred ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecC
Q 012699 99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~ 177 (458)
.. ....+. +...|.+++|+| ++.+|++++.||+|++||+.
T Consensus 523 --~~------------------------------------~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~ 563 (793)
T PLN00181 523 --HY------------------------------------PVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA 563 (793)
T ss_pred --cc------------------------------------ceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence 00 011122 345788999987 47899999999999999998
Q ss_pred CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec-CCCCeEEEeec
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS-PVEPIFVSAAA 256 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~ 256 (458)
+++... ....|...|.+++|+|.++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|. +++..+++++.
T Consensus 564 ~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 564 RSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCCEEEEEeC
Confidence 776543 334577899999999778899999999999999999999888777643 468889985 56889999988
Q ss_pred ccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC------Cceee
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA------GLQIT 329 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~------~~~~~ 329 (458)
+ |.|++||+++.+ ....+ .+|...|.++.|. ++.+|++++.|+.|++||++. ..++.
T Consensus 639 d-------------g~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 639 D-------------HKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred C-------------CeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 8 599999998765 33333 4788889999997 678999999999999999974 35678
Q ss_pred eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee-cCC-cc--cCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 330 GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR-NCS-RF--CDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~--~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
.+.+|...+.+++|+|++.+|++|+.|+.|++|+........... ... .. .....+...|.+++|+|++..|++|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 899999999999999999999999999999999987553322110 000 00 01123456799999999999999999
Q ss_pred CCccEEEEEc
Q 012699 406 GSVRAPIYQV 415 (458)
Q Consensus 406 ~~~~i~i~~~ 415 (458)
.+|.|+||++
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999986
No 51
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.4e-36 Score=232.46 Aligned_cols=284 Identities=16% Similarity=0.190 Sum_probs=244.8
Q ss_pred eeccCCCCeEEEEeCC---CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 142 TFLGHTSPISCCRFSS---SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
+..||+.+|..++|+| +|-+|++++.|+.-.+-+-+++..+. ....|.+.|++...+ .+....++++.|-+-++
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--tfeghkgavw~~~l~-~na~~aasaaadftakv 85 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--TFEGHKGAVWSATLN-KNATRAASAAADFTAKV 85 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--eeeccCcceeeeecC-chhhhhhhhcccchhhh
Confidence 4579999999999986 78899999999998887777776654 455678899999988 77778899999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||.-+|..+..+... .-|..++|+.+.+.+++++.+. -+++||++..+.... .+.+|++.|..
T Consensus 86 w~a~tgdelhsf~hk---hivk~~af~~ds~~lltgg~ek-------------llrvfdln~p~App~-E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHK---HIVKAVAFSQDSNYLLTGGQEK-------------LLRVFDLNRPKAPPK-EISGHTGGIRT 148 (334)
T ss_pred hhhhhhhhhhhhhhh---heeeeEEecccchhhhccchHH-------------HhhhhhccCCCCCch-hhcCCCCccee
Confidence 999999988877644 4689999999999999999985 899999987654432 24689999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+-|....+.|++.+.|++|++||.+++..++++.. ..+|+++..+++|++|.+ ...+.|.+||..+.+.+...
T Consensus 149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~----- 221 (334)
T KOG0278|consen 149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSY----- 221 (334)
T ss_pred EEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEE-ecCceeEEeccccccceeec-----
Confidence 99999999999999999999999999999998874 678999999999976654 45678999999987554322
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..+..|.+..++|+...+++|++|..++.||..++..+..+ .+|.++|.|+.|+|+|...|+||+||+||+|..
T Consensus 222 -----k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 222 -----KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred -----cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 34456888999999999999999999999999999888875 699999999999999999999999999999985
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.1e-36 Score=240.62 Aligned_cols=290 Identities=17% Similarity=0.247 Sum_probs=248.0
Q ss_pred CCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeee----eccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 22 NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMG----SAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 22 ~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
|...-+.|..| ||||+||++||.||.+.+|++.++++...+...+ -.-+...+++.|+.+.+++++|+.||.|++
T Consensus 211 g~KSh~EcA~F-SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARF-SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheee-CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 45566999999 9999999999999999999999998774433222 122456778999999999999999999999
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
|.+...+ +++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+
T Consensus 290 Wri~tG~----------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 290 WRIETGQ----------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL 335 (508)
T ss_pred EEEecch----------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence 9998755 666665 89999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEee
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAA 255 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 255 (458)
.++++.. ....|.+-|+...|. +++..+++++.||+|++|+..+.+++.+++......+|..+..-|.++ .++.+.
T Consensus 336 KSGK~LK--EfrGHsSyvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 336 KSGKCLK--EFRGHSSYVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred ccchhHH--HhcCccccccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 9998764 345677889999999 899999999999999999999999999999887777888888888765 555555
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
.. +++.+.++.. +.++.+... ...+...+.+.+|.|.++++.+.|+.++.|...+|+..+++..|
T Consensus 413 rs-------------ntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 413 RS-------------NTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred CC-------------CeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 55 4899988864 666666432 23345777889999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 335 DSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
+..+..++-+|..+.|++-+.||.+++|.
T Consensus 479 EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCcccchhhhhcccchhhhcC
Confidence 99999999999999999999999999994
No 53
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.9e-34 Score=251.19 Aligned_cols=414 Identities=17% Similarity=0.178 Sum_probs=289.9
Q ss_pred HhhccccCCCcceeeeeeccCCCc---eeeeeecCcceEEeccccccccc--cceeeeeccCCceeeeeCCccceeEeec
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNS---TLASGVNEESLLLSTNSSEACAT--TATHMGSAEMGQTWASSRPALSRFATNM 89 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~---~l~s~~~d~~~~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (458)
..+..+.||..+|+|+.+ -|+.+ +++||+.|+.+++|.++...... .+.. .-.+ +++...........
T Consensus 45 ~i~t~l~GH~a~VnC~~~-l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~-----~~cv~a~~~~~~~~ 117 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHW-LPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKE-----CVCVVARSSVMTCK 117 (764)
T ss_pred eeEEeccCCccceEEEEE-cccccccceEEEccCCCcEEEEEEeehheEEEEeecC-ccee-----EEEEEeeeeEEEee
Confidence 356789999999999999 88888 89999999999999998544331 1111 1111 12222222222223
Q ss_pred cCCCcccccccccccCCcccceee------eccCCCCc-CCCcce-eccCCCee--------eeeeeeeeccCCCCeEEE
Q 012699 90 SGNDSISPSKLEFEDVGAGDIIQM------FNDGLYTE-NGRDAQ-GEEDFPEV--------KVDFLETFLGHTSPISCC 153 (458)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~-~g~~~~-~~~~~~~~--------~~~~~~~~~~h~~~v~~~ 153 (458)
+.|+++.+|+.+.........+.. .-+.++.+ .+..+. .+.....+ ++..+..+.||.+.|.++
T Consensus 118 ~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl 197 (764)
T KOG1063|consen 118 AADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSL 197 (764)
T ss_pred ccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhh
Confidence 789999999983322101111111 11223444 333332 22222222 336788899999999999
Q ss_pred EeCCCCC---EEEEEeCCCcEEEEecCCCCCCC-----------------------------ccccccCCCceEEEEEec
Q 012699 154 RFSSSGN---NIASASVDGTVRIWTYDSSTPAS-----------------------------RNATIYCGTEIMSLEWEC 201 (458)
Q Consensus 154 ~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~ 201 (458)
+|...+. +|||+|.|..||||.+.-..... ......|..-|+++.|+
T Consensus 198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~- 276 (764)
T KOG1063|consen 198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH- 276 (764)
T ss_pred hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-
Confidence 9987544 78999999999999864322000 01123567789999999
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
+.+..|++++.|.++.+|...+.. -+...... .....-....|+|++..+++-+.. |..++|
T Consensus 277 p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~-------------Gg~hlW 343 (764)
T KOG1063|consen 277 PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT-------------GGFHLW 343 (764)
T ss_pred cchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc-------------CcEEEE
Confidence 667789999999999999887652 22222222 112346788999999988888877 699999
Q ss_pred ECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC------------------------------
Q 012699 277 NMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG------------------------------ 325 (458)
Q Consensus 277 d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~------------------------------ 325 (458)
..+. .......-..+|...|..++|+|.|.+|++.+.|.+-++|-.-..
T Consensus 344 kt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV 423 (764)
T KOG1063|consen 344 KTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV 423 (764)
T ss_pred eccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence 8433 223334445689999999999999999999988877776532100
Q ss_pred -----c--------------------------------------------------------------------------
Q 012699 326 -----L-------------------------------------------------------------------------- 326 (458)
Q Consensus 326 -----~-------------------------------------------------------------------------- 326 (458)
+
T Consensus 424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP 503 (764)
T KOG1063|consen 424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP 503 (764)
T ss_pred ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence 0
Q ss_pred -------------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-----eEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 327 -------------QITGWPAHDSAISSILFGPDETSIFSLGSDG-----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 327 -------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
.+..+-+|...|.+++.+|+++++|+++... .|++|+..+-.+. .....|.-.
T Consensus 504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---------~~L~~HsLT 574 (764)
T KOG1063|consen 504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---------QELEGHSLT 574 (764)
T ss_pred ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---------heecccceE
Confidence 0111235778899999999999999987643 4899998764322 234578889
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc----cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR----TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|+.++|||||++|++.+.|.++.+|.......... ...|..-|+++.|+|++.++||+|.|.+|+||..+
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEecc
Confidence 99999999999999999999999999865433322 34799999999999999999999999999999863
No 54
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=229.57 Aligned_cols=290 Identities=17% Similarity=0.254 Sum_probs=244.4
Q ss_pred hhccccCCCcceeeeeecc---CCCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccC
Q 012699 16 QLSRLKNNSETIKYANIGQ---TKNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSG 91 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s---~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (458)
...+-.||+.+|-.++| | |+|-+|+|++.|+.-.+-+-+++.-++.+. |. +..+......+....++++.
T Consensus 6 ~pl~c~ghtrpvvdl~~-s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghk-----gavw~~~l~~na~~aasaaa 79 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAF-SPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHK-----GAVWSATLNKNATRAASAAA 79 (334)
T ss_pred CceEEcCCCcceeEEec-cCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccC-----cceeeeecCchhhhhhhhcc
Confidence 34566899999999999 6 699999999999999998888887664443 22 22333445556667788889
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTV 171 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 171 (458)
|=+.++|+.-..+ .++.| .|..-|.+++|+.|.++|++|+.+..+
T Consensus 80 dftakvw~a~tgd----------------------------------elhsf-~hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 80 DFTAKVWDAVTGD----------------------------------ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred cchhhhhhhhhhh----------------------------------hhhhh-hhhheeeeEEecccchhhhccchHHHh
Confidence 9999999965433 33333 488889999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699 172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251 (458)
Q Consensus 172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (458)
||||++..+... .....|.+.|..+.|. ...+.+++...|++||+||.+++..++++... .+|.++.++++|.++
T Consensus 125 rvfdln~p~App-~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---s~VtSlEvs~dG~il 199 (334)
T KOG0278|consen 125 RVFDLNRPKAPP-KEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---SPVTSLEVSQDGRIL 199 (334)
T ss_pred hhhhccCCCCCc-hhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC---CCCcceeeccCCCEE
Confidence 999998766542 3345677899999999 66777888899999999999999999998877 579999999999999
Q ss_pred EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
.++... .|.+||..+...++.+.++ ..|.+..++|+...+++|+.|..++.||..+++.+..+
T Consensus 200 Tia~gs--------------sV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 200 TIAYGS--------------SVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred EEecCc--------------eeEEeccccccceeeccCc---cccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 888764 9999999999999888654 45999999999999999999999999999999998886
Q ss_pred -eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 332 -PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 332 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
++|.++|.|+.|+|+|...++||.||+|++|.+...+
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 8999999999999999999999999999999987653
No 55
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.7e-34 Score=232.52 Aligned_cols=297 Identities=15% Similarity=0.173 Sum_probs=248.5
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
.+.+|..|++.|.+++.+|+.++++||+.|..-.+|++.++... .....|...|.++.|+ .++.+|++|..+|.|++
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~eltgHKDSVt~~~Fs-hdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELTGHKDSVTCCSFS-HDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEecCCCCceEEEEEc-cCceEEEecCCCccEEE
Confidence 56688999999999999999999999999999999999998854 3456788999999999 89999999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
|+..++.....+.... ..+.-+.|+|.+..+++|+.| |.+.+|.+.+....+.+. +|..++++
T Consensus 133 ~~~stg~~~~~~~~e~--~dieWl~WHp~a~illAG~~D-------------GsvWmw~ip~~~~~kv~~--Gh~~~ct~ 195 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEV--EDIEWLKWHPRAHILLAGSTD-------------GSVWMWQIPSQALCKVMS--GHNSPCTC 195 (399)
T ss_pred EEcccCceEEEeeccc--CceEEEEecccccEEEeecCC-------------CcEEEEECCCcceeeEec--CCCCCccc
Confidence 9999999887775322 568889999999999999998 699999999976666664 78889999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
-.|.|+|+.++++..||+|++||+.+++++..+... .....++.++..+..++.|+.++.+++-+..+++.+.......
T Consensus 196 G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~ 275 (399)
T KOG0296|consen 196 GEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV 275 (399)
T ss_pred ccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Confidence 999999999999999999999999999999887632 3467789999999999999999999999888766554333111
Q ss_pred c--ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 378 R--FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 378 ~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
. ..........|..+.++..-.+.|+|+-||+|.|||+... .+.....|..+|+.+.|-+ ..+|++++.||.|++|
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQW 353 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hhheeccCCCceEEEEEcC-cchheeeccCceEEee
Confidence 1 1111222334555556666788899999999999999876 4556668999999999999 6789999999999999
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
|.
T Consensus 354 Da 355 (399)
T KOG0296|consen 354 DA 355 (399)
T ss_pred ec
Confidence 84
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.7e-34 Score=230.01 Aligned_cols=300 Identities=17% Similarity=0.277 Sum_probs=241.4
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------------CC----CCccccccCCCceEEEEEecC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------------TP----ASRNATIYCGTEIMSLEWECK 202 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------------~~----~~~~~~~~~~~~v~~~~~~~~ 202 (458)
....+..|.+++++.+|+|||.++|+|+.|..|+|.|++.. .. ........|-.+|.++.|+ |
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH-P 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH-P 182 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec-c
Confidence 44567789999999999999999999999999999998621 00 0112334566889999999 7
Q ss_pred CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
....|++++.|++|+++|+......+.++......+|.++.|+|.|.+++.+.... .+++||+.+.+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp-------------~~rlYdv~T~Q 249 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP-------------TLRLYDVNTYQ 249 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC-------------ceeEEecccee
Confidence 78899999999999999998766655566655667899999999999999998774 99999999987
Q ss_pred eeEEe-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCC-CCeEEEEEcCCCCEEEEecCCCeE
Q 012699 283 AMTVL-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHD-SAISSILFGPDETSIFSLGSDGKI 359 (458)
Q Consensus 283 ~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~~~~~dg~i 359 (458)
+...- +-..|.+.|+++.+++.+++.++|+.||.|++||--+++++.++. +|. ..|.+..|..+++++++.+.|..+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~v 329 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTV 329 (430)
T ss_pred EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCccee
Confidence 75433 345688899999999999999999999999999998889988875 565 479999999999999999999999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC-CCCCcEEEEEEC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL-PHGAAITTVDWH 437 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~ 437 (458)
++|.+.++..+...... . ..+....-+...|+....|++.-.+ .+.+.-||.++......+. +|.+.+..+.-+
T Consensus 330 kLWEi~t~R~l~~YtGA-g---~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HS 405 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGA-G---TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHS 405 (430)
T ss_pred eeeeecCCceEEEEecC-C---cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence 99999987665532211 0 0111222344566666777666554 4779999999886654443 899999999999
Q ss_pred CCCCeEEEecCCCcEEEEe
Q 012699 438 PTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 438 ~~~~~l~s~~~dg~v~iw~ 456 (458)
|.+.-+.+|+.|-..|+|-
T Consensus 406 P~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCCceeeecccceeeeee
Confidence 9999999999999999994
No 57
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=236.98 Aligned_cols=288 Identities=16% Similarity=0.313 Sum_probs=248.3
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc------ccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN------ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
|..+.+-|..|+|||++|++|+.||-|.+||..+++..... .......+|.|+.|+ .+..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FS-RDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFS-RDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeec-ccHHHhhccCcCCcEEE
Confidence 45677889999999999999999999999999888764322 122345789999999 88999999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
|.+++|.++..+... |...|+++.|+.|+..+++++.|. ++++.-++++++++.+. +|...|+.
T Consensus 290 Wri~tG~ClRrFdrA-HtkGvt~l~FSrD~SqiLS~sfD~-------------tvRiHGlKSGK~LKEfr--GHsSyvn~ 353 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRA-HTKGVTCLSFSRDNSQILSASFDQ-------------TVRIHGLKSGKCLKEFR--GHSSYVNE 353 (508)
T ss_pred EEEecchHHHHhhhh-hccCeeEEEEccCcchhhcccccc-------------eEEEeccccchhHHHhc--Cccccccc
Confidence 999999999888733 336899999999999999999995 99999999999999885 88899999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
..|.++|.++++++.||+|++|+..+.+++.+++.. ..+|+++..-| +...++.|...+++.+.++.. ++..
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG--QvVr--- 428 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG--QVVR--- 428 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc--eEEe---
Confidence 999999999999999999999999999999888743 45788888877 556899999999999999873 3322
Q ss_pred CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.+.......+...+.++||.|.+++..++|+.++-+.+.++.....+.-|..-|..++-+|..++||+-++||.+++|
T Consensus 429 --sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 429 --SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLW 506 (508)
T ss_pred --eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhc
Confidence 223333455667788999999999999999999999999987777777899999999999999999999999999999
Q ss_pred e
Q 012699 456 S 456 (458)
Q Consensus 456 ~ 456 (458)
.
T Consensus 507 k 507 (508)
T KOG0275|consen 507 K 507 (508)
T ss_pred C
Confidence 5
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.2e-35 Score=237.63 Aligned_cols=273 Identities=16% Similarity=0.329 Sum_probs=228.2
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.....|+|+.+. ...+++|..|.+|+|||..+..+.. ....|.+.|.|+.|. .+.+++|+.|.+|++||++++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~--~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK--ILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHH--hhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCC
Confidence 356789999984 4579999999999999998877654 456788999999986 569999999999999999999
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCcEEEEEEcc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPAITSLCFNH 303 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~i~~~~~~~ 303 (458)
+++.++-.+- ..|..+.|+ +.++++++.|+ ++.+||+.....+.. ..+.+|...|+.+.|+
T Consensus 268 e~l~tlihHc--eaVLhlrf~--ng~mvtcSkDr-------------siaVWdm~sps~it~rrVLvGHrAaVNvVdfd- 329 (499)
T KOG0281|consen 268 EPLNTLIHHC--EAVLHLRFS--NGYMVTCSKDR-------------SIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 329 (499)
T ss_pred chhhHHhhhc--ceeEEEEEe--CCEEEEecCCc-------------eeEEEeccCchHHHHHHHHhhhhhheeeeccc-
Confidence 9998887765 578888886 56899999986 999999987553221 1235788899999986
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 304 NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 304 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
.+++++++.|.+|++|++.+++.++++.+|...|-|+.+ .++++++|+.|.+|++||+..+..+. ..+
T Consensus 330 -~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR---------vLe 397 (499)
T KOG0281|consen 330 -DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR---------VLE 397 (499)
T ss_pred -cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---------HHh
Confidence 569999999999999999999999999999999998887 58899999999999999999874322 234
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---------ccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---------RTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
+|+.-|.++.| |.+.+++|..||+|++||+.....+. ....|.+.|..+.|. ...+++++.|.+|.|
T Consensus 398 GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILi 473 (499)
T KOG0281|consen 398 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILI 473 (499)
T ss_pred chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEE
Confidence 67788888888 57789999999999999998776552 223689999999995 457999999999999
Q ss_pred EeCC
Q 012699 455 MSLS 458 (458)
Q Consensus 455 w~l~ 458 (458)
||+.
T Consensus 474 WdFl 477 (499)
T KOG0281|consen 474 WDFL 477 (499)
T ss_pred EEcC
Confidence 9973
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.5e-34 Score=218.39 Aligned_cols=292 Identities=13% Similarity=0.199 Sum_probs=241.2
Q ss_pred HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
.+.++.|..|..+|.++.| +-||+|.+++++|.++++|+...+.++.... ......+.+..+.++..+++|+.|+
T Consensus 7 tkr~~~l~~~qgaV~avry-N~dGnY~ltcGsdrtvrLWNp~rg~liktYs----ghG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRY-NVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----GHGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred chhceeecccccceEEEEE-ccCCCEEEEcCCCceEEeecccccceeeeec----CCCceeeeccccccccccccCCCCc
Confidence 3467788999999999999 9999999999999999999998887663322 1122334466777888999999999
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 173 (458)
.+.+||+.... ..+.+++|.+.|+.++|+.+...+++|+.|.++++
T Consensus 82 ~v~vwDV~TGk----------------------------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 82 AVQVWDVNTGK----------------------------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRL 127 (307)
T ss_pred eEEEEEcccCe----------------------------------eeeecccccceeeEEEecCcceEEEeccccceeEE
Confidence 99999987754 77889999999999999999999999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 253 (458)
||.++....+....-.....|.++... +..+++|+.||+++.||++.|+.....-. .+|+++.|+++++..+.
T Consensus 128 wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 128 WDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLA 200 (307)
T ss_pred EEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcC----CcceeEEecCCCCEEEE
Confidence 999887765544444556778888875 67799999999999999999987655443 47999999999999999
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
++-+ +++++.|-.+++.+..++.......-...+++.....+++|++||.|++||+.....+..+..
T Consensus 201 ~~l~-------------stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 201 SSLD-------------STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eecc-------------ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc
Confidence 9888 499999999999998876433333345566777778999999999999999999999999998
Q ss_pred CCCC-eEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 334 HDSA-ISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 334 ~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
+... +..+.++|.-..|+++.. +.+.+|.-+
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~ 299 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE 299 (307)
T ss_pred CCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence 8887 899999998777777654 445666543
No 60
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=217.83 Aligned_cols=279 Identities=15% Similarity=0.234 Sum_probs=234.9
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
+.+++|...|..+++ +.+|..|++|+.|+++.+|+++..++.
T Consensus 14 r~~~~~~~~v~Sv~w-n~~g~~lasgs~dktv~v~n~e~~r~~------------------------------------- 55 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW-NCDGTKLASGSFDKTVSVWNLERDRFR------------------------------------- 55 (313)
T ss_pred HHhhhhhhcceEEEE-cccCceeeecccCCceEEEEecchhhh-------------------------------------
Confidence 778899999999999 999999999999999999987644211
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEec
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTY 176 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~ 176 (458)
.-...++|.+.|-.++|+|. ..++++++.|.+|++||+
T Consensus 56 -----------------------------------------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 56 -----------------------------------------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred -----------------------------------------hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 11234689999999999984 568999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
..+++... .....+-.-+.|+ |++.+++++..|..|...|.++.+.....+.. ..+..+.|+.++.+++....
T Consensus 95 r~~k~~~~---i~~~~eni~i~ws-p~g~~~~~~~kdD~it~id~r~~~~~~~~~~~---~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 95 RSGKCTAR---IETKGENINITWS-PDGEYIAVGNKDDRITFIDARTYKIVNEEQFK---FEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred ccCcEEEE---eeccCcceEEEEc-CCCCEEEEecCcccEEEEEecccceeehhccc---ceeeeeeecCCCCEEEEecC
Confidence 99887643 2233444567898 77889999999999999999988877665544 46788899987777776665
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
. |+|.|......+++..++ .|+....|+.|+|+|++||+|+.|..+.+||+...-+++.+..+.-
T Consensus 168 l-------------G~v~ILsypsLkpv~si~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 168 L-------------GCVEILSYPSLKPVQSIK--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred C-------------ceEEEEeccccccccccc--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 5 699999998888877764 7888899999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
+|+.+.|+.+|++||++|.|..|-|=+++++.++... ...++...++|+|...+||.++.|
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----------eccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999988766543 245567889999999999998875
No 61
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.2e-33 Score=247.65 Aligned_cols=423 Identities=16% Similarity=0.178 Sum_probs=306.0
Q ss_pred HhhccccCCCcceeeeeeccCCC--ceeeeeecCcceEEeccccccccc---------------------cc--------
Q 012699 15 AQLSRLKNNSETIKYANIGQTKN--STLASGVNEESLLLSTNSSEACAT---------------------TA-------- 63 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~--~~l~s~~~d~~~~iw~~~~~~~~~---------------------~~-------- 63 (458)
+.++.|.||.+.|..++|....+ -+|||+|.|..|+||++....... .+
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 45788999999999999943333 489999999999999886554110 11
Q ss_pred ---eeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCc---------ccceeeeccCCCCcCCCcceeccC
Q 012699 64 ---THMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGA---------GDIIQMFNDGLYTENGRDAQGEED 131 (458)
Q Consensus 64 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~ 131 (458)
.|-.|+.. +.-.+....|.+++.|.++-+|.......-- ......+....|+|++..+.+-+.
T Consensus 262 ll~GHeDWV~s-----v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYS-----VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEE-----EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 12233332 4444556788999999999999976653211 112223445568999988777766
Q ss_pred CCeeeee---------eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEe
Q 012699 132 FPEVKVD---------FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWE 200 (458)
Q Consensus 132 ~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~ 200 (458)
.+...++ ......||.+.|..++|.|.|++|++.+.|.|-|++-.-..+.. .......|+..+.|++|-
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 6666553 23456799999999999999999999999999999864422211 112234477889999998
Q ss_pred cCCCeEEEEEcCCCcEEEEEcCC----------C----------------------ceee---------------ec---
Q 012699 201 CKSDRLLLIGTADGGIKAWNVDA----------K----------------------RVVC---------------DL--- 230 (458)
Q Consensus 201 ~~~~~~l~~~~~dg~i~~wd~~~----------~----------------------~~~~---------------~~--- 230 (458)
+....+++|.....+|+|+... + +... +.
T Consensus 417 -n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 417 -NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred -cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 4467789999999999998621 0 0000 00
Q ss_pred -----c-------------------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 231 -----N-------------------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 231 -----~-------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
. ...|...|++++.+|++++++++........ ..|++|+..+......
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh--------AvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH--------AVIRLWNTANWLQVQE 567 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc--------eEEEEEeccchhhhhe
Confidence 0 0012234899999999999999887643222 4899999999888776
Q ss_pred eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEE
Q 012699 287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW 362 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 362 (458)
+ ..|.-.|+.++|||||++|++.+.|+++.+|...... .....+.|..-|+++.|+|++.+|+|+|.|.+|++|
T Consensus 568 L--~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 568 L--EGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred e--cccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 5 4788889999999999999999999999999975422 133467899999999999999999999999999999
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-----CCCEEEEEeCCccEEEEEccCCC------------cccccC
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-----NGRRLLVTSGSVRAPIYQVRGHA------------SGMRTL 425 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~~l~~~~~~~~i~i~~~~~~~------------~~~~~~ 425 (458)
...+..... . .......+...|+++++.| .+..+++|-+.|.|.+|...... ......
T Consensus 646 ~~~~~~d~~----i-~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (764)
T KOG1063|consen 646 EEPDLRDKY----I-SRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI 720 (764)
T ss_pred eccCchhhh----h-hhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecccccccc
Confidence 998752100 0 1112345677899999887 23478899999999999965111 112233
Q ss_pred CCCCcEEEEEECCCC--------C--eEEEecCCCcEEEEeCC
Q 012699 426 PHGAAITTVDWHPTL--------P--MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 426 ~h~~~v~~~~~~~~~--------~--~l~s~~~dg~v~iw~l~ 458 (458)
+|...|+.+.|.|.. . .|++|++|..+||++++
T Consensus 721 ~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 721 GPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 688899999999862 2 57999999999999874
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.3e-33 Score=229.61 Aligned_cols=310 Identities=16% Similarity=0.239 Sum_probs=239.2
Q ss_pred ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeee
Q 012699 61 TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFL 140 (458)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 140 (458)
..+.|-.|+.. +... .+++.+|+.||.+++|+..- +..
T Consensus 100 ~~~~hdDWVSs-----v~~~--~~~IltgsYDg~~riWd~~G-----------------------------------k~~ 137 (423)
T KOG0313|consen 100 QCFLHDDWVSS-----VKGA--SKWILTGSYDGTSRIWDLKG-----------------------------------KSI 137 (423)
T ss_pred ccccchhhhhh-----hccc--CceEEEeecCCeeEEEecCC-----------------------------------ceE
Confidence 55556677766 4443 88999999999999999643 156
Q ss_pred eeeccCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEecCCCCCCCccccc--cCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 141 ETFLGHTSPISCCRFSSS---GNNIASASVDGTVRIWTYDSSTPASRNATI--YCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
..+.||.++|.+++|.-. ...+++++.|.++++|.++.++........ .|...|.+++.. .++.++++|+.|.+
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTM 216 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccce
Confidence 678899999998887543 335999999999999999877654333333 678899999988 88999999999999
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
|.+|+..+.. ...++.... -+. .-.-.+-..+...+...+.+|..+
T Consensus 217 lkiWs~~~~~-~~~~E~~s~---------~rr------------------------k~~~~~~~~~~r~P~vtl~GHt~~ 262 (423)
T KOG0313|consen 217 LKIWSVETDE-EDELESSSN---------RRR------------------------KKQKREKEGGTRTPLVTLEGHTEP 262 (423)
T ss_pred eeecccCCCc-cccccccch---------hhh------------------------hhhhhhhcccccCceEEecccccc
Confidence 9999933221 111111100 000 001111112233344456799999
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
|.++.|++ ...+++++.|.+|+.||+.++....++.. ...++++..+|..++|++|+.|..+++||.+++......
T Consensus 263 Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~-- 338 (423)
T KOG0313|consen 263 VSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS-- 338 (423)
T ss_pred eeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE--
Confidence 99999998 66899999999999999999998888765 667999999999999999999999999999987543322
Q ss_pred CCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCC-cccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 376 CSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHA-SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
....+|...|.++.|+|.. ..|++++.|+++++||+++.+ ++..+.+|.+.|.++.|.. +..+++||.|.+|+
T Consensus 339 ----~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 339 ----QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred ----EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 2345788899999999966 457788999999999999887 7777889999999999974 55899999999999
Q ss_pred EEe
Q 012699 454 VMS 456 (458)
Q Consensus 454 iw~ 456 (458)
|+.
T Consensus 414 i~~ 416 (423)
T KOG0313|consen 414 IFK 416 (423)
T ss_pred Eec
Confidence 985
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.3e-33 Score=237.68 Aligned_cols=298 Identities=20% Similarity=0.297 Sum_probs=231.7
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
.....+.+|+..|.++++.|.|-+|++|+.|.+|++||+....... +.......+.|.++.|++ .+..|++.+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCc
Confidence 4556788999999999999999999999999999999997654321 222233457899999994 555666666667
Q ss_pred cEEEEEcCCCceeeecc----------CCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 215 GIKAWNVDAKRVVCDLN----------TTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
..+++|-+..+.....+ ...|...+++.+|+|..+ .+++++.| |++++||+...+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------------gtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------------GTLRIWDVNNTKS 303 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------------CcEEEEecCCchh
Confidence 89999976655443332 234556789999999876 56777777 6999999986443
Q ss_pred -eEEeec---CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCCCC--CeEEEEEcCCCCEEEEec
Q 012699 284 -MTVLPL---GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAHDS--AISSILFGPDETSIFSLG 354 (458)
Q Consensus 284 -~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~--~v~~~~~~~~~~~l~~~~ 354 (458)
..+++. .+..-.++.++|+|+|++||+|+.||.|.+|+..+... ...-.+|.. .|+||.||++|++|++-+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 333332 23345789999999999999999999999999865322 233357777 999999999999999999
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccCCCcccccCCCC
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRGHASGMRTLPHG 428 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~~~~~~~~~~h~ 428 (458)
.|+++++||+++.++++..... ......-+.++|||+.++|++|+. .|.+++||..+...+.++.-..
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tg------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~ 457 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTG------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST 457 (641)
T ss_pred CCCceeeeeccccccchhhhcC------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC
Confidence 9999999999998776643321 122334567899999999999875 3679999998887777777667
Q ss_pred CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 429 AAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
..|..+.|+|.-+.|..|+.||+++||
T Consensus 458 aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 458 ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEEeecchhhheeeecCCCceEEE
Confidence 899999999999999999999999986
No 64
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-33 Score=251.89 Aligned_cols=288 Identities=17% Similarity=0.282 Sum_probs=248.6
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.|+..+.+|..++|+|....++++--.|.|++||.+-+.++. ....|.++|..++|+ +...++++|+.|..|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--rFdeHdGpVRgv~FH-~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--RFDEHDGPVRGVDFH-PTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--hhhccCCccceeeec-CCCCeEEecCCccEEEEEec
Confidence 456677889999999999999999999999999998887765 355688999999999 77889999999999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
.+.+++.++..|. ..|+.+.|++.-+++++++.|. +|+||+..+.+++..++ +|...|+|..|
T Consensus 81 k~rrclftL~GHl--DYVRt~~FHheyPWIlSASDDQ-------------TIrIWNwqsr~~iavlt--GHnHYVMcAqF 143 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHL--DYVRTVFFHHEYPWILSASDDQ-------------TIRIWNWQSRKCIAVLT--GHNHYVMCAQF 143 (1202)
T ss_pred ccceehhhhcccc--ceeEEeeccCCCceEEEccCCC-------------eEEEEeccCCceEEEEe--cCceEEEeecc
Confidence 9999999888877 6799999999999999999995 99999999999999986 67778999999
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCc-----------------------------eeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGL-----------------------------QITGWPAHDSAISSILFGPDETSIFS 352 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~ 352 (458)
+|....+++++.|.+|+|||+..-+ ....+.+|...|+-++|+|.-..+++
T Consensus 144 hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS 223 (1202)
T KOG0292|consen 144 HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS 223 (1202)
T ss_pred CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe
Confidence 9999999999999999999974210 12346789999999999999999999
Q ss_pred ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699 353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 353 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
|++|..|++|.+...+. | ....-.+|...|.++-|+|...++++.++|++|++||+.....+..+....+.-+
T Consensus 224 G~DDRqVKlWrmnetKa--W-----EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETKA--W-----EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred cCCcceeeEEEeccccc--e-----eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE
Confidence 99999999999985421 2 2223347888999999999999999999999999999999887777776778999
Q ss_pred EEEECCCCCeEEEecCCCcEEEEeC
Q 012699 433 TVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.++-+|..+++|+|- |+-+.||.+
T Consensus 297 ~laahP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred EEEecCCcceeeeec-CCceEEEEE
Confidence 999999999777665 444555544
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-32 Score=246.25 Aligned_cols=346 Identities=17% Similarity=0.222 Sum_probs=278.2
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
.+..-+..|..++| .|...+++++-..|.|.+||+.-+.++..+.. .+|....+.|-+.+.++++|+.|-.|++|
T Consensus 4 kfEskSsRvKglsF-HP~rPwILtslHsG~IQlWDYRM~tli~rFde----HdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSF-HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE----HDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred hhhcccccccceec-CCCCCEEEEeecCceeeeehhhhhhHHhhhhc----cCCccceeeecCCCCeEEecCCccEEEEE
Confidence 45567788999999 99999999999999999999998877744431 14444557788889999999999999999
Q ss_pred ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699 99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 178 (458)
+...+. ++.+|.||-+.|+.+.|++.-.+|+|+|.|.||+||+..+
T Consensus 79 nYk~rr----------------------------------clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 79 NYKTRR----------------------------------CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred ecccce----------------------------------ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 987755 7788999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---------------------------eeecc
Q 012699 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---------------------------VCDLN 231 (458)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---------------------------~~~~~ 231 (458)
++++. ....|.+-|.|..|+ +...++++++-|.+||+||+..-+. +...-
T Consensus 125 r~~ia--vltGHnHYVMcAqFh-ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 125 RKCIA--VLTGHNHYVMCAQFH-PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred CceEE--EEecCceEEEeeccC-CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 98865 456788899999999 6778999999999999999854211 11111
Q ss_pred CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE
Q 012699 232 TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311 (458)
Q Consensus 232 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 311 (458)
...|...|.-++|+|.-+.+++|+.|+ .|++|.+...+.-..-+..+|.+.|.++-|+|...++++.
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDR-------------qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDR-------------QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcc-------------eeeEEEeccccceeehhhhcccCCcceEEecCccceeEec
Confidence 122335688999999999999999997 9999999887776666677899999999999999999999
Q ss_pred ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
++|++|+|||+...+.+++++...+..+.++-+|..+++++| .|+-+.+|.+....+ +
T Consensus 269 sEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp---------------------a 326 (1202)
T KOG0292|consen 269 SEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP---------------------A 326 (1202)
T ss_pred CCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc---------------------e
Confidence 999999999999999999998888999999999999877755 566677888764311 1
Q ss_pred EEEccCCCEEEEEeCCccEEEEEccCCCccccc--C---CCCCcEEEEEECCCCCeEE
Q 012699 392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--L---PHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--~---~h~~~v~~~~~~~~~~~l~ 444 (458)
.+. +++.|+..- +..|+.+|+.+.+..... . ....++.+++++|....+.
T Consensus 327 ~~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vl 381 (1202)
T KOG0292|consen 327 YAV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVL 381 (1202)
T ss_pred EEE--cCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEE
Confidence 222 233343333 888999999885433221 1 1246889999999877433
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-31 Score=215.13 Aligned_cols=288 Identities=15% Similarity=0.222 Sum_probs=231.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC--CCcE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA--DGGI 216 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i 216 (458)
..+.++.-.+.|+++.|+++|.+|++++.|.++++||..++..... ...+...+..++|..++.. ++.++. |.+|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG~~~~~Fth~~~~-~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYGVDLACFTHHSNT-VIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--eecccccccEEEEecCCce-EEEccCCCCCce
Confidence 4455666778999999999999999999999999999998877642 2233446777888744444 444444 8899
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
+..++.+++.++.+..|. ..|..++.+|.+..+++++.|+ +|++||++..++.-.+...+.
T Consensus 83 ryLsl~dNkylRYF~GH~--~~V~sL~~sP~~d~FlS~S~D~-------------tvrLWDlR~~~cqg~l~~~~~---- 143 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHK--KRVNSLSVSPKDDTFLSSSLDK-------------TVRLWDLRVKKCQGLLNLSGR---- 143 (311)
T ss_pred EEEEeecCceEEEcCCCC--ceEEEEEecCCCCeEEecccCC-------------eEEeeEecCCCCceEEecCCC----
Confidence 999999999999999887 7899999999999999999995 999999998888877765432
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCC--ceeeeee---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAG--LQITGWP---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
..++|+|+|-++|++.....|++||++.- .+..++. +.....+.|.|+|||++++.++..+.+.+.|.-++....
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 45899999999999988889999999873 3444443 336688999999999999999999999999998875322
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCC
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
... ............+|+||++++++|+.||+|++|+++++.....+.+ +..++.++.|+|.-.++++++.
T Consensus 224 -tfs-----~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-- 295 (311)
T KOG1446|consen 224 -TFS-----GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-- 295 (311)
T ss_pred -eEe-----eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--
Confidence 111 1111222236789999999999999999999999999998888887 7899999999999888887754
Q ss_pred cEEEEe
Q 012699 451 SVQVMS 456 (458)
Q Consensus 451 ~v~iw~ 456 (458)
.+-+|=
T Consensus 296 ~l~fw~ 301 (311)
T KOG1446|consen 296 NLVFWL 301 (311)
T ss_pred eEEEEe
Confidence 566663
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=236.33 Aligned_cols=292 Identities=15% Similarity=0.237 Sum_probs=243.3
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+...........++|+.+.|. +++..+++++.|+.++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d-~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFD-SDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeec-CCCceEEeecCCCcee
Confidence 355677889999999999999889999999999999999877644333445556789999999 6778888999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+|++...+...++..|. ..|+++.|......+++++.|+ +|++||+....+.+++-... .+.
T Consensus 245 ~Wnvd~~r~~~TLsGHt--dkVt~ak~~~~~~~vVsgs~DR-------------tiK~WDl~k~~C~kt~l~~S---~cn 306 (459)
T KOG0288|consen 245 LWNVDSLRLRHTLSGHT--DKVTAAKFKLSHSRVVSGSADR-------------TIKLWDLQKAYCSKTVLPGS---QCN 306 (459)
T ss_pred eeeccchhhhhhhcccc--cceeeehhhccccceeeccccc-------------hhhhhhhhhhheeccccccc---ccc
Confidence 99999999999998866 7899999998888899999986 99999999988887764332 245
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
.++.+ ...+++|..|+.|++||.++..+....+.+. .|+++..++++..|.+++.|.++.+.|+++....... ...
T Consensus 307 DI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~-sA~ 382 (459)
T KOG0288|consen 307 DIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF-SAE 382 (459)
T ss_pred ceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEe-ecc
Confidence 55554 5578999999999999999999999988765 8999999999999999999999999999986543322 111
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCC-cEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGA-AITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.+ ......+.+.|||++.|+++|+.||.|+||++.+++....+.. +.. .|++++|+|.|..|++++.++.+.+|
T Consensus 383 g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 383 GF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 11 1233478899999999999999999999999999876555543 333 79999999999999999999999999
Q ss_pred e
Q 012699 456 S 456 (458)
Q Consensus 456 ~ 456 (458)
.
T Consensus 459 ~ 459 (459)
T KOG0288|consen 459 T 459 (459)
T ss_pred C
Confidence 4
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-33 Score=251.33 Aligned_cols=309 Identities=17% Similarity=0.174 Sum_probs=220.8
Q ss_pred hcccc-CCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 17 LSRLK-NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 17 ~~~l~-~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
.+.+. .|.+.|.++.| |+||+|||||+.|+.|+||.+...+.. ........+. +..+. ..+....+.+..+.+
T Consensus 259 ~Qe~~~ah~gaIw~mKF-S~DGKyLAsaGeD~virVWkVie~e~~-~~~~~~~~~~--~~~~~--~~s~~~p~~s~~~~~ 332 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKF-SHDGKYLASAGEDGVIRVWKVIESERM-RVAEGDSSCM--YFEYN--ANSQIEPSTSSEEKI 332 (712)
T ss_pred eeccccccCCcEEEEEe-CCCCceeeecCCCceEEEEEEeccchh-cccccccchh--hhhhh--hccccCccccccccc
Confidence 34566 89999999999 999999999999999999998764331 0000000000 00000 000000000000000
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
.--..... ...-++. .........+.-+++..|.||.+.|..+.||.++ +|++++.|.|||+|+
T Consensus 333 ~~~~s~~~------------~~~~s~~---~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh 396 (712)
T KOG0283|consen 333 SSRTSSSR------------KGSQSPC---VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWH 396 (712)
T ss_pred cccccccc------------cccCCcc---ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeec
Confidence 00000000 0000011 0000011112225788899999999999999765 899999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA 255 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 255 (458)
+...+++. .+.|..-|+|++|+|.|++++++|+-||.+|||++...+.+.-...+ .-|++++|.|+|+..+.|+
T Consensus 397 ~~~~~CL~---~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt 470 (712)
T KOG0283|consen 397 PGRKECLK---VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGT 470 (712)
T ss_pred CCCcceee---EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEE
Confidence 99887764 67889999999999999999999999999999999988887666555 4799999999999999999
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecCCC------CCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCcee
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED------PPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~------~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~ 328 (458)
.+ |.+++|+....+....+....+ ...|+.+.|.|. ...+++.+.|..|+|||.++..++
T Consensus 471 ~~-------------G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 471 FN-------------GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred ec-------------cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 98 6999999998887766544332 237999999984 345777789999999999988888
Q ss_pred eeeeCCCC--CeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 329 TGWPAHDS--AISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 329 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
..++++.. .-....|+.||++|++++.|..|++|++..
T Consensus 538 ~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 538 HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 88886643 334678899999999999999999999843
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-33 Score=214.93 Aligned_cols=281 Identities=14% Similarity=0.262 Sum_probs=225.9
Q ss_pred EEEEeCCC-CCEEEEEe-------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 151 SCCRFSSS-GNNIASAS-------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 151 ~~~~~~~~-~~~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
.++.|||= .++||.+. ..|++.|-++.....+.......-...+..++|++...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46788882 23333321 36889999987555554445555667899999998889999999999999999954
Q ss_pred C-CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 223 A-KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 223 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
. ..++..++.|. ..|.++.|++..+ .+++++-| |+|++|+....+.+.++. +|...|...+
T Consensus 92 ~~s~Pi~~~kEH~--~EV~Svdwn~~~r~~~ltsSWD-------------~TiKLW~~~r~~Sv~Tf~--gh~~~Iy~a~ 154 (311)
T KOG0277|consen 92 MPSKPIHKFKEHK--REVYSVDWNTVRRRIFLTSSWD-------------GTIKLWDPNRPNSVQTFN--GHNSCIYQAA 154 (311)
T ss_pred CCCcchhHHHhhh--hheEEeccccccceeEEeeccC-------------CceEeecCCCCcceEeec--CCccEEEEEe
Confidence 3 34556666555 6899999998665 55666666 699999999888888864 7889999999
Q ss_pred Ecc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 301 FNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 301 ~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
|+| .++++++++.|+.+++||++..-....+..|...|.++.|+. +...|+||+.|+.|+.||+++.+.++
T Consensus 155 ~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl------- 227 (311)
T KOG0277|consen 155 FSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL------- 227 (311)
T ss_pred cCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc-------
Confidence 999 578999999999999999987444445899999999999988 67789999999999999999876543
Q ss_pred ccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEE
Q 012699 379 FCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVM 455 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw 455 (458)
....+|...|..+.|||.. ..|++++.|-+++|||...+... .+...|...|..+.|++-.. ++|+++.|+.++||
T Consensus 228 -~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 228 -FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred -eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeee
Confidence 2335788899999999965 68889999999999999855433 34446889999999998644 99999999999999
Q ss_pred e
Q 012699 456 S 456 (458)
Q Consensus 456 ~ 456 (458)
+
T Consensus 307 ~ 307 (311)
T KOG0277|consen 307 N 307 (311)
T ss_pred c
Confidence 8
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=215.18 Aligned_cols=299 Identities=12% Similarity=0.187 Sum_probs=237.2
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
..|+||..+++-+.| +.+|.+|.|++.|.+..+|-...++
T Consensus 4 i~l~GHERplTqiKy-N~eGDLlFscaKD~~~~vw~s~nGe--------------------------------------- 43 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKY-NREGDLLFSCAKDSTPTVWYSLNGE--------------------------------------- 43 (327)
T ss_pred cccccCccccceEEe-cCCCcEEEEecCCCCceEEEecCCc---------------------------------------
Confidence 468899999999999 9999999999999999999643331
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
.+-++.||++.|+|++.+-+.++++||+.|.++++||++
T Consensus 44 -----------------------------------------rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 44 -----------------------------------------RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred -----------------------------------------eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 445678999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----CCcEEEEEcC-------CCceeeeccCCCCCCceeeeeec
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGIKAWNVD-------AKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
+++.+. ....+.+|..+.|+ .++++++.... .+.|.++|++ +.++...+..++ +.+..+-|.
T Consensus 83 tGk~la---~~k~~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg 156 (327)
T KOG0643|consen 83 TGKQLA---TWKTNSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWG 156 (327)
T ss_pred CCcEEE---EeecCCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeec
Confidence 998764 55667899999999 56666655543 4689999998 445566666555 789999999
Q ss_pred CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 325 (458)
|-+..++++..+ |.|.+||.++++....- ...|...|+.+.++|+..++++++.|.+-++||.++-
T Consensus 157 ~l~~~ii~Ghe~-------------G~is~~da~~g~~~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 157 PLGETIIAGHED-------------GSISIYDARTGKELVDS-DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred ccCCEEEEecCC-------------CcEEEEEcccCceeeec-hhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 999999999998 69999999998655433 2457778999999999999999999999999999999
Q ss_pred ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEE--eccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEW--SLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+.++++.. ..||++.+++|....++.|+.....-+= +.+.++- ......+..+....+|-++|++++|+|+|+.
T Consensus 223 ~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGks 301 (327)
T KOG0643|consen 223 EVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKS 301 (327)
T ss_pred eeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcc
Confidence 99888864 7799999999977777766543222111 1111100 0000112234456688899999999999999
Q ss_pred EEEEeCCccEEEEEccCC
Q 012699 401 LLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 401 l~~~~~~~~i~i~~~~~~ 418 (458)
.++|++||.|++...+..
T Consensus 302 YsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 302 YSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cccCCCCceEEEEEeccc
Confidence 999999999999876543
No 71
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=231.03 Aligned_cols=284 Identities=17% Similarity=0.280 Sum_probs=234.1
Q ss_pred eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699 138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI 216 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 216 (458)
.++..|.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+.. ....|.+.|..+++. . ..+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--~f~AH~G~V~Gi~v~-~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--TFKAHEGLVRGICVT-Q--TSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--eeecccCceeeEEec-c--cceEEecCCcce
Confidence 3667789999999999999976 679999999999999998877654 445677899999997 3 668999999999
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
+.|.++.. +..++... +.+..+.-+..+..+++++. .|.|||.....++..+.... ..|
T Consensus 132 K~wk~~~~-p~~tilg~---s~~~gIdh~~~~~~FaTcGe---------------~i~IWD~~R~~Pv~smswG~--Dti 190 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILGK---SVYLGIDHHRKNSVFATCGE---------------QIDIWDEQRDNPVSSMSWGA--DSI 190 (433)
T ss_pred eeeeccCC-cceeeecc---ccccccccccccccccccCc---------------eeeecccccCCccceeecCC--Cce
Confidence 99998763 44444433 45677777777888888875 89999999989999887644 569
Q ss_pred EEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699 297 TSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 297 ~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
.++.|+|.. ..|+++..|+.|.+||+++..+++.+.- .-.-+.|+|+|.+--+++++.|..++.||++....++
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~---- 265 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL---- 265 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccc----
Confidence 999999965 4667777999999999999998876542 4456789999988889999999999999999865543
Q ss_pred CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.....|.+.|..+.|||.|+-+++|+.|.+|+||.++.+....... .-...|.++.||.|.+++++||+|+.||+
T Consensus 266 ----~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 266 ----NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred ----hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 2334788899999999999999999999999999998764332222 34568999999999999999999999999
Q ss_pred Ee
Q 012699 455 MS 456 (458)
Q Consensus 455 w~ 456 (458)
|.
T Consensus 342 Wk 343 (433)
T KOG0268|consen 342 WK 343 (433)
T ss_pred ee
Confidence 96
No 72
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=7.7e-33 Score=221.68 Aligned_cols=315 Identities=14% Similarity=0.259 Sum_probs=251.3
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
-.-|..|+.+..+.+| ++||.++|+|+.|-+|+|.|.+..-......
T Consensus 105 t~ylt~HK~~cR~aaf-s~DG~lvATGsaD~SIKildvermlaks~~~-------------------------------- 151 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAF-SPDGSLVATGSADASIKILDVERMLAKSKPK-------------------------------- 151 (430)
T ss_pred eEEEeecccceeeeee-CCCCcEEEccCCcceEEEeehhhhhhhcchh--------------------------------
Confidence 4567789999999999 9999999999999999999876441110000
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
++.. . +....-..+++|..|.++|+++.|+|....|++|+.|++|+++|+
T Consensus 152 --em~~-------------------~---------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDf 201 (430)
T KOG0640|consen 152 --EMIS-------------------G---------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDF 201 (430)
T ss_pred --hhcc-------------------C---------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEec
Confidence 0000 0 000011267889999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc-CCCCCCceeeeeecCCCCeEEEee
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAA 255 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 255 (458)
...........+....+|.++.|+ |.+.+|+.|....++++||+++-++..... ..++...|.++.+++.+++.++++
T Consensus 202 sK~saKrA~K~~qd~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS 280 (430)
T KOG0640|consen 202 SKTSAKRAFKVFQDTEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS 280 (430)
T ss_pred ccHHHHHHHHHhhccceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence 766554444555667899999999 789999999999999999999988765433 345567899999999999999999
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD 335 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 335 (458)
.| |.|++||--+++++..+........|.+..|..+++|+++.+.|..+++|.+.+++++..+.+-.
T Consensus 281 kD-------------G~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 281 KD-------------GAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred cC-------------CcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 99 69999999999999988654445689999999999999999999999999999999999887542
Q ss_pred -----CCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc
Q 012699 336 -----SAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR 409 (458)
Q Consensus 336 -----~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 409 (458)
.--+...|+....+++.-.. .+.+.-||.++.... .....+|.+.+..+.-||.+.-+++++.|-+
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~--------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV--------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchhhh--------hhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 12234567777777776554 567999999986443 2234478899999999999999999999999
Q ss_pred EEEEEcc
Q 012699 410 APIYQVR 416 (458)
Q Consensus 410 i~i~~~~ 416 (458)
+++|--+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999643
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-32 Score=225.91 Aligned_cols=284 Identities=15% Similarity=0.233 Sum_probs=229.5
Q ss_pred CCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 22 NNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 22 ~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
.|.+.|.++.. . ++.++||+.||.+++|+....... +++...+|... ......+++++.|.++
T Consensus 103 ~hdDWVSsv~~-~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~--------n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 103 LHDDWVSSVKG-A--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIK--------NSSSCLFVSASMDQTL 171 (423)
T ss_pred cchhhhhhhcc-c--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEec--------CCccceEEEecCCceE
Confidence 48888888888 4 899999999999999998765443 34444444332 2234479999999999
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
++|.++.... ..+.++.-+||...|-+++..++|.++++|+.|.+++||+
T Consensus 172 ~Lw~~~~~~~------------------------------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 172 RLWKWNVGEN------------------------------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred EEEEecCchh------------------------------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecc
Confidence 9999876431 1113334459999999999999999999999999999999
Q ss_pred cCCCCC-----------------------CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 176 YDSSTP-----------------------ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 176 ~~~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
...... ........|..+|.++.|. + ...+++++.|.+|+.||+.+++...++..
T Consensus 222 ~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~-d-~~v~yS~SwDHTIk~WDletg~~~~~~~~ 299 (423)
T KOG0313|consen 222 VETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS-D-ATVIYSVSWDHTIKVWDLETGGLKSTLTT 299 (423)
T ss_pred cCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc-C-CCceEeecccceEEEEEeecccceeeeec
Confidence 322110 1112334577889999998 3 67899999999999999999999888776
Q ss_pred CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCC-CEEEE
Q 012699 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNG-KILAA 310 (458)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~ 310 (458)
. ....++.++|...++++++.++ .+++||.+++. .+..+++.+|.+.|.++.|+|.. ..|++
T Consensus 300 ~---ksl~~i~~~~~~~Ll~~gssdr-------------~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 300 N---KSLNCISYSPLSKLLASGSSDR-------------HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred C---cceeEeecccccceeeecCCCC-------------ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 6 4789999999999999999996 99999999754 34455667899999999999954 56789
Q ss_pred EecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 311 SAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
|+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.|.+|+++.-.
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999999999977 999999999999999996 45599999999999998754
No 74
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=215.53 Aligned_cols=299 Identities=14% Similarity=0.224 Sum_probs=219.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc---cccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR---NATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
.+..|++|.+.|++++|+.||++|+|++.|++|++|+++.-..... ...... ...+.+.|.|+....+++.-...+
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCCE
Confidence 4557899999999999999999999999999999999876433211 111111 245788999777777777777779
Q ss_pred EEEEEcCCCc---eeeeccC-------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 216 IKAWNVDAKR---VVCDLNT-------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 216 i~~wd~~~~~---~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
+++|.+...+ ....+.. ..+...+.++-...++.++++++.+. .|.+|+++ |+.+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt-------------~i~lw~lk-Gq~L~ 222 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT-------------KICLWDLK-GQLLQ 222 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCC-------------cEEEEecC-Cceee
Confidence 9999875322 1111110 11223566677778888999998885 99999999 78877
Q ss_pred EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC---CC-----ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699 286 VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS---AG-----LQITGWPAHDSAISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 357 (458)
.+.. ....-...+.||+|+++++++..-.|++|.+- .| ..+..+++|...|..++|+|+.+.+++.|.||
T Consensus 223 ~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 223 SIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred eecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 7753 23345678899999999999998999999862 22 34667899999999999999999999999999
Q ss_pred eEEEEeccCCCeeEEeecCCcc--cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEE
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRF--CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTV 434 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~ 434 (458)
++++||..-.-..-......+. ............++++|+|+.||++.+. .++++..+.++....+. .|...|+++
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~i 379 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSI 379 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeE
Confidence 9999998643221111010010 1122334455689999999999876654 58999888876554444 699999999
Q ss_pred EECCCCCeEEEecCCCcEEEEe
Q 012699 435 DWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
+|+++|++++|+| |..+++..
T Consensus 380 s~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 380 SYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EecCCCcEEeeec-ceeeeeec
Confidence 9999999999998 66777653
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-32 Score=237.78 Aligned_cols=275 Identities=17% Similarity=0.290 Sum_probs=232.1
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
+-+.|+. .+.||.|. ...|.+|+..++.... .... +...|+++.|+ +++.+|++|..+|.|.+||..+.+.+..+
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~-l~~~-~~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTE-LCSF-GEELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEE-eEec-CCCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccc
Confidence 3466774 34566654 4679999988877432 1222 27889999999 88999999999999999999999888888
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (458)
..+ +...|-+++|. ...+.+|+.+ +.|..+|++..+.... .+.+|...|..+.|+++++++|+
T Consensus 256 ~~~-h~~rvg~laW~--~~~lssGsr~-------------~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 256 RGS-HASRVGSLAWN--SSVLSSGSRD-------------GKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred cCC-cCceeEEEecc--CceEEEecCC-------------CcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeecc
Confidence 773 33789999998 6678888877 5999999998777666 46789999999999999999999
Q ss_pred EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEecC--CCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 311 SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLGS--DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
|+.|+.+.|||....++...+..|...|.+++|+| ....||+|+. |+.|++||..++.... ......
T Consensus 319 GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----------~vdtgs 388 (484)
T KOG0305|consen 319 GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----------SVDTGS 388 (484)
T ss_pred CCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----------ccccCC
Confidence 99999999999988899999999999999999999 5568888765 9999999999764433 224566
Q ss_pred ceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 388 CRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.|..+.|++..+-|+++.+ ++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 7999999999977776544 678999999999888899999999999999999999999999999999986
No 76
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-32 Score=245.10 Aligned_cols=297 Identities=16% Similarity=0.241 Sum_probs=212.3
Q ss_pred eeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc--------cccCCCceEEEEEec--CCCe--
Q 012699 139 FLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA--------TIYCGTEIMSLEWEC--KSDR-- 205 (458)
Q Consensus 139 ~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------~~~~~~~v~~~~~~~--~~~~-- 205 (458)
..+.+. .|.+.|+++.||+||+|||+||.|+.|+||.+...+...... .....+.+..+.-++ ..++
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 899999999999999999999999999999986633211000 000000011111110 0000
Q ss_pred EEEEEcCCCcEEEEEcC----CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 206 LLLIGTADGGIKAWNVD----AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
..-.+..... .+.+.. ..++++.+..|. ..|.++.|+.++ +|++++.|. ++++|++...
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSKn~-fLLSSSMDK-------------TVRLWh~~~~ 400 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSKNN-FLLSSSMDK-------------TVRLWHPGRK 400 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccc--hhheecccccCC-eeEeccccc-------------cEEeecCCCc
Confidence 1111111112 111111 234455555554 789999999765 667777775 9999999999
Q ss_pred ceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 282 KAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
.++..|. |...|+|++|+| |.+||++|+.||.|+||++...+.+. +..-..-|++++|.|||++.+.|+.+|.++
T Consensus 401 ~CL~~F~---HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 401 ECLKVFS---HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCR 476 (712)
T ss_pred ceeeEEe---cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEE
Confidence 9999984 788999999999 78999999999999999998766544 444458899999999999999999999999
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCC--CcEEEEEEC
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHG--AAITTVDWH 437 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~--~~v~~~~~~ 437 (458)
+|+....+..........-.....+. .|+.+.|.|.. ..+++.+.|.+|+|+|......+.++.|+. ..-...+|+
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs 555 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFS 555 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEc
Confidence 99998765443322221212222233 79999999854 468889999999999998887777777643 344567899
Q ss_pred CCCCeEEEecCCCcEEEEeC
Q 012699 438 PTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 438 ~~~~~l~s~~~dg~v~iw~l 457 (458)
.||++|+++++|..|+||++
T Consensus 556 ~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 556 SDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCCCEEEEeecCceEEEEeC
Confidence 99999999999999999996
No 77
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=216.19 Aligned_cols=304 Identities=18% Similarity=0.276 Sum_probs=251.5
Q ss_pred cceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC
Q 012699 125 DAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (458)
.+++....+.++.+.++.|.||.+.|+.++.......+.+++.|.+.+||.++++.++. ....|.+.|+++.|+ +.+
T Consensus 126 rivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--~Y~GH~GSVNsikfh-~s~ 202 (481)
T KOG0300|consen 126 RIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--TYTGHTGSVNSIKFH-NSG 202 (481)
T ss_pred hheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee--eecccccceeeEEec-ccc
Confidence 44455566777888999999999999999998888899999999999999999999865 455688999999999 789
Q ss_pred eEEEEEcCCCcEEEEEc------CCC----------------------------------ceeeeccCCCCCCceeeeee
Q 012699 205 RLLLIGTADGGIKAWNV------DAK----------------------------------RVVCDLNTTDAFPSVLDLKC 244 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~------~~~----------------------------------~~~~~~~~~~~~~~v~~~~~ 244 (458)
.++++++.|++-.||.. ... .++..+. .|...|.+..|
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--gH~~vV~a~dW 280 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--GHRAVVSACDW 280 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--ccccceEehhh
Confidence 99999999999999972 110 0111111 23355777888
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA 324 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 324 (458)
...++.+++++.|+ +..+||+++++++..+. +|....+.++-+|..+++++.+.|.+.++||.+.
T Consensus 281 L~gg~Q~vTaSWDR-------------TAnlwDVEtge~v~~Lt--GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe 345 (481)
T KOG0300|consen 281 LAGGQQMVTASWDR-------------TANLWDVETGEVVNILT--GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE 345 (481)
T ss_pred hcCcceeeeeeccc-------------cceeeeeccCceecccc--CcchhccccccCCcceEEEEeccCceeEeccchh
Confidence 88899999999996 99999999999998875 7778899999999999999999999999999985
Q ss_pred C-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699 325 G-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV 403 (458)
Q Consensus 325 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 403 (458)
. ..+..|++|...|+++.|..+. .+++|++|.+|++||+++...++.... ...+++.++.+..++.++.
T Consensus 346 aI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR---------tdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 346 AIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR---------TDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred hcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee---------cCCccceeEeecCCceEEe
Confidence 3 4577899999999999998765 688999999999999999876654432 3456888999999999999
Q ss_pred EeCCccEEEEEccCCCccc----ccCCCCCcEEEEEECCCCC--eEEEecCCCcEEEEeCC
Q 012699 404 TSGSVRAPIYQVRGHASGM----RTLPHGAAITTVDWHPTLP--MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~l~ 458 (458)
-..+..|++||+++..... ...+|...|+|++|..+-. -|.+||.|..+.=|.++
T Consensus 416 PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 9999999999999874321 2238999999999976543 58899999999999874
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=238.83 Aligned_cols=384 Identities=14% Similarity=0.226 Sum_probs=297.2
Q ss_pred HHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccc-eeEeeccCC
Q 012699 14 EAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALS-RFATNMSGN 92 (458)
Q Consensus 14 ~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 92 (458)
.+.+.+++++...|+++.= +|-=..+|.|..+|+++|.++..++.+-.+.+- .++...+.|..|+ ..+++++..
T Consensus 192 ~K~v~~f~~~~s~IT~ieq-sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----~g~VtslSFrtDG~p~las~~~~ 266 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQ-SPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----WGRVTSLSFRTDGNPLLASGRSN 266 (910)
T ss_pred CcEEEEecccccceeEecc-CCcceEEEEeccCceEEEEEcccCcEEEEEEcc----ccceeEEEeccCCCeeEEeccCC
Confidence 3467889999999999999 999999999999999999999998776444432 2455557776654 456777778
Q ss_pred CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeee-eccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699 93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLET-FLGHTSPISCCRFSSSGNNIASASVDGTV 171 (458)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 171 (458)
|.+.+||++... .+.. ...|.+.|....|-|....+++++.|..+
T Consensus 267 G~m~~wDLe~kk----------------------------------l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 267 GDMAFWDLEKKK----------------------------------LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred ceEEEEEcCCCe----------------------------------eeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 999999997744 2222 34789999999999999999999999999
Q ss_pred EEEecCCCCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC----------------C
Q 012699 172 RIWTYDSSTPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT----------------T 233 (458)
Q Consensus 172 ~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----------------~ 233 (458)
++|=.+++....+. ....|..+..++.|.-.++..+.+++.|++++.+++......+.+.. .
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 99977655543322 33457788999999878899999999999999998754322111111 0
Q ss_pred CCCCceeeeeecCCCC----eEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeec---CCCCCcEEEEEEccCC
Q 012699 234 DAFPSVLDLKCSPVEP----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPL---GEDPPAITSLCFNHNG 305 (458)
Q Consensus 234 ~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~---~~~~~~i~~~~~~~~~ 305 (458)
....+|..+++..... .++++..+ +-..+.|+.++... ...+.. ......+++++.++.|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~------------~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKG------------KRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecC------------cceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 0113444554443211 22333222 24899999987554 223321 1123568999999999
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeee---eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGW---PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
++.+.|+..|.|.+|++.+|-...++ +.|.++|+.++...-++.+++++.+|.+++||..+.... ..
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~----------~~ 530 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK----------KS 530 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee----------ee
Confidence 99999999999999999999888888 699999999999988899999999999999999875311 11
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
......+..+..+.....++++..+-.|.++|..+.+....+.+|.+.|++++|||||++|++++.|++||+||+.
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred eccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 2344567888888899999999999999999999998888888999999999999999999999999999999973
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=224.61 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=234.6
Q ss_pred hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
.+..|.||.+.|.|+|= .|.. ..++||+.||.++|||.....
T Consensus 58 Fv~~L~gHrdGV~~lak-hp~~ls~~aSGs~DG~VkiWnlsqR~------------------------------------ 100 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAK-HPNKLSTVASGSCDGEVKIWNLSQRE------------------------------------ 100 (433)
T ss_pred chhhccccccccchhhc-CcchhhhhhccccCceEEEEehhhhh------------------------------------
Confidence 36789999999999999 6665 788888888888888876541
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
+..+++.|.+.|..|++.. ..+++++.|.+|+.|
T Consensus 101 --------------------------------------------~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 101 --------------------------------------------CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred --------------------------------------------hhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 5567789999999999986 678999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE-E
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-S 253 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~ 253 (458)
.++.. ....+.....+..+.-+ ..+..+++++. .|.|||.....++..+.... ..+.++.|+|....++ +
T Consensus 135 k~~~~----p~~tilg~s~~~gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 135 KIDGP----PLHTILGKSVYLGIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILAS 205 (433)
T ss_pred eccCC----cceeeeccccccccccc-cccccccccCc--eeeecccccCCccceeecCC--CceeEEecCCCcchheee
Confidence 98763 22344555667777665 55677888876 59999999999988888766 5799999999887554 4
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cceeeeee
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWP 332 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~ 332 (458)
++.| +.|.+||+++..++..+.+... -+.++|+|++-.|++|++|..++.||++. ..++..+.
T Consensus 206 ~~sD-------------rsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 206 CASD-------------RSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred eccC-------------CceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhc
Confidence 4466 4999999999999988765544 47899999888889999999999999987 56788889
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
+|.+.|..+.|+|.|+-+++||.|.+|+||..+.+...- ......-..|.++.||.|.+|+++|+.|+.|++
T Consensus 270 dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------iYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRl 341 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------IYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRL 341 (433)
T ss_pred ccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--------hhhHhhhheeeEEEEeccccEEEecCCCcceee
Confidence 999999999999999999999999999999998642210 000111235899999999999999999999999
Q ss_pred EEccCCCc
Q 012699 413 YQVRGHAS 420 (458)
Q Consensus 413 ~~~~~~~~ 420 (458)
|.....+.
T Consensus 342 Wka~Asek 349 (433)
T KOG0268|consen 342 WKAKASEK 349 (433)
T ss_pred eecchhhh
Confidence 98875543
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=4.7e-31 Score=220.61 Aligned_cols=284 Identities=17% Similarity=0.259 Sum_probs=240.8
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
..+.++...|....+++|+.|.++.++|...++... ....|...|..+.|+ ++...+++++.|..|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--~~~Gh~kki~~v~~~-~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--TLKGHTKKITSVKFH-KDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--hccCcceEEEEEEec-cchhheeecCCcceEEeeccccccCc
Confidence 468888888887889999999999999998887654 345567789999999 77888999999999999998877765
Q ss_pred eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699 228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI 307 (458)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (458)
.....++ .+|+.+..+|.|.++++++.+ |+..+.|++++..+.....+...-.+++.+|+|||..
T Consensus 297 ~~~~~h~--~~V~~ls~h~tgeYllsAs~d-------------~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi 361 (506)
T KOG0289|consen 297 TSSRPHE--EPVTGLSLHPTGEYLLSASND-------------GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI 361 (506)
T ss_pred ccccccc--ccceeeeeccCCcEEEEecCC-------------ceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE
Confidence 5555555 789999999999999999998 5999999999999888765444456999999999999
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
|.+|..||.|++||+.++..+..|.+|.++|..++|+.+|.+|+++++|+.|++||++..+... .+.. ....
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k------t~~l--~~~~ 433 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK------TIQL--DEKK 433 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc------eeec--cccc
Confidence 9999999999999999999999999999999999999999999999999999999999764322 1111 2233
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccC--CCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRG--HASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+.++.|.+.|++|+.++.+=+|++++-.+ ......+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 434 ~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 434 EVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 689999999999999998887777776443 3344555578889999999999999999999999999876
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.9e-32 Score=226.42 Aligned_cols=287 Identities=16% Similarity=0.257 Sum_probs=237.2
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
...|..|...+..+.| -++...|++|+.|..|++|+...+..- .+..++- ..+....+.+..++..+++.+.|+.++
T Consensus 168 ~~~ld~h~gev~~v~~-l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~~~tLaG-s~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEF-LRNSDTLATGGSDRIIKLWNVLGEKSE-LISTLAG-SLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhccccccceeEE-ccCcchhhhcchhhhhhhhhcccchhh-hhhhhhc-cCCCcceeeecCCCceEEeecCCCcee
Confidence 4577789999999999 999999999999999999999877621 1111110 012233466777788999999999999
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
+|++.... ...+|.||++.|+++.|......+++|+.|.+|++||+
T Consensus 245 ~Wnvd~~r----------------------------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 245 LWNVDSLR----------------------------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred eeeccchh----------------------------------hhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 99987644 66789999999999999987777999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
....+.. .......+..+... ...+++|-.|+.|++||+++.........+ +.|+++..++++..+.+.+.
T Consensus 291 ~k~~C~k---t~l~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g---g~vtSl~ls~~g~~lLsssR 361 (459)
T KOG0288|consen 291 QKAYCSK---TVLPGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLG---GRVTSLDLSMDGLELLSSSR 361 (459)
T ss_pred hhhheec---cccccccccceEec---ceeeeecccccceEEEeccCCceeeEeecC---cceeeEeeccCCeEEeeecC
Confidence 8876653 33344555666654 566899999999999999999998888776 58999999999999999988
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCC--CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED--PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
|. ++.+.|+++.+....+.-.+. ....+.+.|||++.|+++|+.||.|+||++.++++...+...
T Consensus 362 Dd-------------tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 362 DD-------------TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred CC-------------ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence 85 999999999888877754332 234788999999999999999999999999999998888765
Q ss_pred CCC--eEEEEEcCCCCEEEEecCCCeEEEE
Q 012699 335 DSA--ISSILFGPDETSIFSLGSDGKIIEW 362 (458)
Q Consensus 335 ~~~--v~~~~~~~~~~~l~~~~~dg~i~iw 362 (458)
... |++++|+|.|..|++++.++.+.+|
T Consensus 429 ~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 429 TSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 554 9999999999999999999999999
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-30 Score=206.85 Aligned_cols=283 Identities=16% Similarity=0.216 Sum_probs=224.3
Q ss_pred cCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699 145 GHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 145 ~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
.-.+.|.+++||| ...+++.+|.|++||+|++.............+.++|.+++|+ .++..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-ddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-DDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-cCCceEEeeccCCceEEEEccC
Confidence 3467799999999 4556678999999999999874332234566788999999999 8899999999999999999999
Q ss_pred CceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
++.. .+..|. .+|..+.|-+... .|++|+.|. +|+.||++...++..+.+++ .+.++..
T Consensus 104 ~Q~~-~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDK-------------TlKfWD~R~~~pv~t~~LPe---RvYa~Dv 164 (347)
T KOG0647|consen 104 GQVS-QVAAHD--APVKTCHWVPGMNYQCLVTGSWDK-------------TLKFWDTRSSNPVATLQLPE---RVYAADV 164 (347)
T ss_pred CCee-eeeecc--cceeEEEEecCCCcceeEeccccc-------------ceeecccCCCCeeeeeeccc---eeeehhc
Confidence 9654 444444 7899999987766 899999996 99999999999988887654 3555543
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeee-e-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCc
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITG-W-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSR 378 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~ 378 (458)
....++++..++.|.+|+++++..... . ..-.-.++|++..++.+..+.|+-+|.+.+..+... .......+|++
T Consensus 165 --~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 165 --LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred --cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEec
Confidence 345788899999999999976533221 1 122346899999998888899999999999999874 23334456666
Q ss_pred ccCCCC-CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE-ecCC
Q 012699 379 FCDPES-SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT-GSAD 449 (458)
Q Consensus 379 ~~~~~~-~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-~~~d 449 (458)
...... .-..|++++|+|.-..|+++++||+..+||-+...++.....|..+|++.+|+.+|.++|- .|.|
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 544322 2457889999999999999999999999999998888777889999999999999997774 3444
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.4e-30 Score=217.20 Aligned_cols=293 Identities=16% Similarity=0.205 Sum_probs=240.5
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC----c----------cc-c-ccCCCceEEEEEecCC
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS----R----------NA-T-IYCGTEIMSLEWECKS 203 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~----------~~-~-~~~~~~v~~~~~~~~~ 203 (458)
...+..|.-+|.+++++|+.++.++++.|++|.-|++.++.... . .. . ..|...+.+++.+ ++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS-~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS-SD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc-CC
Confidence 45677899999999999999999999999999999988776320 0 00 0 1455679999999 89
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
+.+|++|+.|..|.||+.++.+.+..+..+. ..|.+++|-.....+++++.|+ .+++|++.....
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~gt~~lys~s~Dr-------------svkvw~~~~~s~ 278 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRKGTSELYSASADR-------------SVKVWSIDQLSY 278 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccc--cceeeeeeecCccceeeeecCC-------------ceEEEehhHhHH
Confidence 9999999999999999999999998877766 7899999999999999999996 999999998777
Q ss_pred eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
+.++ .+|+..|..+.....++.+-+|+.|+++++|++.. +....+.+|.+.+.|++|-.+ ..+++|+++|.|.+|+
T Consensus 279 vetl--yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 279 VETL--YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHH--hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEee
Confidence 7665 48889999999888888888999999999999954 334456788999999999654 5899999999999999
Q ss_pred ccCCCeeEEeecCCcccCC---CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEEC
Q 012699 364 LQNQGQVLWTRNCSRFCDP---ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWH 437 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~ 437 (458)
+.+.+.+......+..... ...+.+|++++..|...++++|+.+|.|++|.+..+.....+. .-.+.|++++|+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~ 434 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFS 434 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEc
Confidence 9987776665554444333 2334599999999999999999999999999999884433332 567899999999
Q ss_pred CCCCeEEE-ecCCCcE
Q 012699 438 PTLPMFLT-GSADHSV 452 (458)
Q Consensus 438 ~~~~~l~s-~~~dg~v 452 (458)
++|+.+++ .+....+
T Consensus 435 ~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 435 NSGKRIVAGIGKEHRL 450 (479)
T ss_pred cCCCEEEEeccccccc
Confidence 99995554 4444333
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.4e-29 Score=190.60 Aligned_cols=255 Identities=20% Similarity=0.308 Sum_probs=203.2
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEec---CCCeEEEEEcC-C
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWEC---KSDRLLLIGTA-D 213 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~---~~~~~l~~~~~-d 213 (458)
+.-+.|.+.|+|.+|+|+|++|++|+.|.+|++..++...+.. ......|.+.|..++|-. ..+.+|++++. |
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 3445799999999999999999999999999998765443321 122344678899999962 23456666554 6
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC-
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED- 292 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~- 292 (458)
..|++-|...|+..+.+..+. +-|.++ ++-++-++++++.|. +|++||++-..++..+...-|
T Consensus 163 c~iy~tdc~~g~~~~a~sght--ghilal-yswn~~m~~sgsqdk-------------tirfwdlrv~~~v~~l~~~~~~ 226 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHT--GHILAL-YSWNGAMFASGSQDK-------------TIRFWDLRVNSCVNTLDNDFHD 226 (350)
T ss_pred ceEEEeecCCCCcceeecCCc--ccEEEE-EEecCcEEEccCCCc-------------eEEEEeeeccceeeeccCcccC
Confidence 678888888998888877765 445554 455788899999885 999999998888877654333
Q ss_pred ----CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 293 ----PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 293 ----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
...|.+++..|.|++|++|..|....+||++.++.++.+..|...|+++.|+|...++++++.|..|++-|+...-
T Consensus 227 ~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 227 GGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred CCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 2568999999999999999999999999999999999999999999999999999999999999999999987420
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
.+ ...+.....|++.+..+.|+|..--+++.+.
T Consensus 307 ---------------a~--------------------------------el~~~vv~ehkdk~i~~rwh~~d~sfisssa 339 (350)
T KOG0641|consen 307 ---------------AH--------------------------------ELPIMVVAEHKDKAIQCRWHPQDFSFISSSA 339 (350)
T ss_pred ---------------hh--------------------------------cCceEEEEeccCceEEEEecCccceeeeccC
Confidence 00 0011222247788899999999999999999
Q ss_pred CCcEEEEeCC
Q 012699 449 DHSVQVMSLS 458 (458)
Q Consensus 449 dg~v~iw~l~ 458 (458)
|.++.+|-++
T Consensus 340 dkt~tlwa~~ 349 (350)
T KOG0641|consen 340 DKTATLWALN 349 (350)
T ss_pred cceEEEeccC
Confidence 9999999764
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-29 Score=203.81 Aligned_cols=289 Identities=15% Similarity=0.196 Sum_probs=221.8
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccC--CCcc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSG--NDSI 95 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~i 95 (458)
+.++.....|+++.| +++|++|++++.|.++.|+|...+.....+....+..+ .+.|.....-++.++. |.+|
T Consensus 8 k~f~~~~~~i~sl~f-s~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~----~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDF-SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD----LACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEe-cCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc----EEEEecCCceEEEccCCCCCce
Confidence 345556788999999 99999999999999999999999987766655444444 1222222223333333 5666
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
+.-++.... .++.|.||...|+.++.+|-+..+++++.|++|++||
T Consensus 83 ryLsl~dNk----------------------------------ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWD 128 (311)
T KOG1446|consen 83 RYLSLHDNK----------------------------------YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWD 128 (311)
T ss_pred EEEEeecCc----------------------------------eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeE
Confidence 665554433 7889999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCC-CCCCceeeeeecCCCCeEE
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTT-DAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 252 (458)
++..++.... +...-..++|+ +.|-++|++.....|++||++.- .+..++... ........+.|+|+|+.++
T Consensus 129 lR~~~cqg~l----~~~~~pi~AfD-p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 129 LRVKKCQGLL----NLSGRPIAAFD-PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred ecCCCCceEE----ecCCCcceeEC-CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 9977665321 12223456788 77888898888889999999863 344444433 3346788999999999988
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
.+... +.+.+.|.-+|.....+........ -...+|.||++++++|+.||+|.+|+++++..+..+
T Consensus 204 lsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 204 LSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred EEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 88776 4999999999998888865544332 256789999999999999999999999999999999
Q ss_pred eC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 332 PA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 332 ~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
++ +.+++.++.|+|.-.+++++ +..+.+|=..
T Consensus 271 ~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 271 RGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred cCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 98 68999999999987667665 4568888654
No 86
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=9e-29 Score=210.92 Aligned_cols=394 Identities=13% Similarity=0.141 Sum_probs=278.2
Q ss_pred HHHhhccccCCCcceeeeeeccCCCceeeeeecCc--------ceEEeccccccccc-------cceeeeeccCCceeee
Q 012699 13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEE--------SLLLSTNSSEACAT-------TATHMGSAEMGQTWAS 77 (458)
Q Consensus 13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~--------~~~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~ 77 (458)
.|...+.+.||+..|.|+++ .||.-.+++|-..+ .++|||..+-.... .+.++++++.
T Consensus 93 ee~~Qr~y~GH~ddikc~~v-HPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~------ 165 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAV-HPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKI------ 165 (626)
T ss_pred hhhhcccccCCCCceEEEee-cCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeeccc------
Confidence 44456788899999999999 99999999876665 47899955443331 1223333332
Q ss_pred eCCccceeEee--ccCCCcccccccccccCCcccceeee----ccCCCCcCCCcceeccCCCeeee---------eeeee
Q 012699 78 SRPALSRFATN--MSGNDSISPSKLEFEDVGAGDIIQMF----NDGLYTENGRDAQGEEDFPEVKV---------DFLET 142 (458)
Q Consensus 78 ~~~~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~ 142 (458)
..+.++.. -+.+.-+.+|+++.... ...++.. -...|.|.+.-+......+-+.+ +....
T Consensus 166 ---~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~ 240 (626)
T KOG2106|consen 166 ---NGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGI 240 (626)
T ss_pred ---CCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeec
Confidence 12222222 23455678888765331 1112222 23347777665444333332222 33444
Q ss_pred eccC-CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 143 FLGH-TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 143 ~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
++++ ..-|.|++|.++|. ++||..+|.|.||+..+.+... ....|.+.|.+++.. .++. |++|+.|..|..||
T Consensus 241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k--~~~aH~ggv~~L~~l-r~Gt-llSGgKDRki~~Wd- 314 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISK--QVHAHDGGVFSLCML-RDGT-LLSGGKDRKIILWD- 314 (626)
T ss_pred cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEe--EeeecCCceEEEEEe-cCcc-EeecCccceEEecc-
Confidence 5544 36699999999986 7799999999999986665443 233788999999987 5554 66699999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
..-+.++..+.++..++++.++-...+ ++.+... +.|-.=.++++-.+..+ +|......++.
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtr-------------N~iL~Gt~~~~f~~~v~---gh~delwgla~ 376 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTR-------------NFILQGTLENGFTLTVQ---GHGDELWGLAT 376 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCc--EEEeecc-------------ceEEEeeecCCceEEEE---ecccceeeEEc
Confidence 445555666777777788877655444 4444433 25554455544433333 56667899999
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
+|+...+++++.|+.+++|+ ..+++.+.. -..++.|+.|+|.| .++.|+..|...+.|.++...+. ..
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~-~~------- 444 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT-IH------- 444 (626)
T ss_pred CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE-EE-------
Confidence 99999999999999999999 445544433 36789999999999 99999999999999999843332 21
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
....+++.++|+|+|.+||+|+.|+.|+||.+.......... -|..+|+.+.|++|+++|.+-+.|-.|..|.
T Consensus 445 --~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 445 --TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred --ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 225678999999999999999999999999998776555444 2458999999999999999999999999994
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=5.4e-30 Score=215.98 Aligned_cols=293 Identities=12% Similarity=0.146 Sum_probs=234.4
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
.++|+++.|+|..+.|++|+.|++++||.++...............+|.+.+|.|.+...+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 57899999999999999999999999999987665544444445679999999965555999999999999999998876
Q ss_pred eeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 227 VCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 227 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
...-..... ...+....+++++++++..+.. |.|.+....+++.+..++++ +.|..++|+.++
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-------------G~I~lLhakT~eli~s~Kie---G~v~~~~fsSds 356 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-------------GHIHLLHAKTKELITSFKIE---GVVSDFTFSSDS 356 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccC-------------ceEEeehhhhhhhhheeeec---cEEeeEEEecCC
Confidence 443222211 2467788999999999999888 69999999999999998765 459999999999
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCC-CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS-AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES 384 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 384 (458)
+.|++.+.+|.|++||++...+++++....+ .-++++.++++.+||+|+..|.|.|||..+..... ..........
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~dN 433 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTVDN 433 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhhhh
Confidence 9999999999999999999999988875322 23567778999999999999999999976432111 1112223334
Q ss_pred CCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 385 SKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 385 ~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
....|+.++|+||++.||.++. .+.+++-.+.+......+. ..-+.|+|++|+|.+.+||.|..+|.|.+|.|.
T Consensus 434 Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 434 LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5567999999999999999886 5789998887764433333 234679999999999999999999999999873
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.9e-31 Score=229.99 Aligned_cols=354 Identities=15% Similarity=0.210 Sum_probs=271.5
Q ss_pred CCCccee---eeeeccCCCceeeeeecCcceEEeccccccc------c-ccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699 22 NNSETIK---YANIGQTKNSTLASGVNEESLLLSTNSSEAC------A-TTATHMGSAEMGQTWASSRPALSRFATNMSG 91 (458)
Q Consensus 22 ~h~~~i~---~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (458)
.|...|+ .+...-+.++||.||+.|+.|++|+.....- + ....|..|++| +..-..++-++++|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND-----iiL~~~~~tlIS~Ss 93 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND-----IILCGNGKTLISASS 93 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh-----HHhhcCCCceEEecC
Confidence 3666676 6666667888999999999999999865432 2 33348899999 555556778999999
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEe-CCCCCEEEEEeCCCc
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRF-SSSGNNIASASVDGT 170 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~ 170 (458)
|-++++|+..... ..+..+++.|.+.|.|+++ .++...+|+||-|+.
T Consensus 94 DtTVK~W~~~~~~--------------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 94 DTTVKVWNAHKDN--------------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRK 141 (735)
T ss_pred CceEEEeecccCc--------------------------------chhHhhhhcccchheeeeecccCceeEEecCCCcc
Confidence 9999999975421 0166788899999999999 788889999999999
Q ss_pred EEEEecCCCCC--C------Cccccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 171 VRIWTYDSSTP--A------SRNATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 171 v~iwd~~~~~~--~------~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
|.+||++++.. . ...... .+..+|++++.+ +.+..+++|+..+.|++||.++++.+..++.|. ..|..
T Consensus 142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT--dNVr~ 218 (735)
T KOG0308|consen 142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT--DNVRV 218 (735)
T ss_pred EEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccc--cceEE
Confidence 99999987632 1 111111 455789999998 778899999999999999999999888888665 68999
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 321 (458)
+..+++|..+++++.| |+|++||+...+++.++. .|...|.++..+|+-.++++|+.||.|+.=|
T Consensus 219 ll~~dDGt~~ls~sSD-------------gtIrlWdLgqQrCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSD-------------GTIRLWDLGQQRCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred EEEcCCCCeEeecCCC-------------ceEEeeeccccceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecc
Confidence 9999999999999999 699999999999988875 5667799999999999999999999999999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEE
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRL 401 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 401 (458)
+++......+-....+|..+..+.+.+.+-+++.|+.|+-|-..-. ..+++.|.+.
T Consensus 284 l~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~------------------------~~l~~s~~~~ 339 (735)
T KOG0308|consen 284 LRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD------------------------IALSVSGDLD 339 (735)
T ss_pred cCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc------------------------cccccCCCCC
Confidence 9985444444445678888888766666678889999999987632 2445555554
Q ss_pred EEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 402 LVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 402 ~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
. -+.+......+... .+........++...+.-.|.+.++|=...|.+.+||+
T Consensus 340 ~-~~T~~~~~~~~~~~--tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 340 F-FSTDSNNHSCDLTN--TPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred c-ccccCCCccccccC--CCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEe
Confidence 4 33333334444322 11111222345666666778889999999999999996
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=5.2e-30 Score=216.08 Aligned_cols=299 Identities=16% Similarity=0.223 Sum_probs=234.9
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
++.+..|.-+|.|+++ ++|+++..+++.+++|.-|+..++.....+
T Consensus 135 ~~~~~~H~~s~~~val-s~d~~~~fsask~g~i~kw~v~tgk~~~~i--------------------------------- 180 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVAL-SPDDKRVFSASKDGTILKWDVLTGKKDRYI--------------------------------- 180 (479)
T ss_pred ceeeccccCcceEEEe-eccccceeecCCCcceeeeehhcCcccccc---------------------------------
Confidence 6778889999999999 999999999999999999998887422000
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
|.-.. .. .. ... .++.- . ++|...|.+++.+|||++||+|+.|..|.||+.
T Consensus 181 -~~~~e-------v~-k~----------------~~~--~~k~~-r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~ 231 (479)
T KOG0299|consen 181 -IERDE-------VL-KS----------------HGN--PLKES-R-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDC 231 (479)
T ss_pred -cccch-------hh-hh----------------ccC--CCCcc-c-ccccceeEEEEEcCCCcEEEecCCCceEEEecC
Confidence 00000 00 00 000 00011 1 389999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
++.+.+. ....|...|.+++|- .+...+++++.|+.+++|+++....+.++..|+ ..|..+.....++.+.+++.
T Consensus 232 ~t~ehv~--~~~ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq--d~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 232 DTLEHVK--VFKGHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLYGHQ--DGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred cccchhh--cccccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHhCCc--cceeeechhcccceEEeccc
Confidence 9988764 356678999999998 788889999999999999999988888887776 67999999888888888888
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CC-
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AH- 334 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~- 334 (458)
|+ ++++|++.... ... +.++.+.+-|++|-.+ ..|++|+.+|.|.+|++.+.+++.+.+ +|
T Consensus 307 Dr-------------T~rlwKi~ees-qli--frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 307 DR-------------TVRLWKIPEES-QLI--FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred cc-------------eeEEEeccccc-eee--eeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccc
Confidence 85 99999995422 222 3466678999999755 479999999999999999988887654 22
Q ss_pred ----------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699 335 ----------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT 404 (458)
Q Consensus 335 ----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 404 (458)
...|++++..|..+++++|+.+|.|++|-+..+-..+ .+.......+.|++++|+++|+.+++|
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i------~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI------NLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc------ceeeecccccEEEEEEEccCCCEEEEe
Confidence 1278999999999999999999999999999774332 122222466789999999999988777
Q ss_pred eC
Q 012699 405 SG 406 (458)
Q Consensus 405 ~~ 406 (458)
.+
T Consensus 444 iG 445 (479)
T KOG0299|consen 444 IG 445 (479)
T ss_pred cc
Confidence 54
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=5.5e-30 Score=237.97 Aligned_cols=256 Identities=18% Similarity=0.290 Sum_probs=210.1
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC--CC--------------CCccccccCCCceEEEEEecC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS--TP--------------ASRNATIYCGTEIMSLEWECK 202 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--~~--------------~~~~~~~~~~~~v~~~~~~~~ 202 (458)
.+.+...|.+.|+|+.|+|||++||+|++|+.|.||..... .. ........|...|..++|+ +
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p 139 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-P 139 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC-C
Confidence 44566789999999999999999999999999999998730 00 0112334578899999999 5
Q ss_pred CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
++.+|++++.|++|.+||..+.+.+..+..|. +.|..+.|.|-|+++++.+.|+ +|++|++.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~--s~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~ 204 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ--SLVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWG 204 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeeccc--ccccceEECCccCeeeeecCCc-------------eEEEEEcccce
Confidence 89999999999999999999998888888876 7899999999999999999996 99999988877
Q ss_pred eeEEeecC----CCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-----CCC-
Q 012699 283 AMTVLPLG----EDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQITGWPAHDSAISSILFGP-----DET- 348 (458)
Q Consensus 283 ~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~~- 348 (458)
..+.++-. .....+..+.|||||.+|++... -..+.|.+-.+.+.-..+-+|.+++.+++|+| ..+
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence 76665421 11235788999999999998643 24788999888888888999999999999998 111
Q ss_pred -----------EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 349 -----------SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 349 -----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
.+|+|+.|+.|.||.....++... ..+-....|..++|+|||-.|++++.||+|.+..++.
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v--------i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV--------IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCchhh--------hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 578999999999999876544321 2223566799999999999999999999999999874
Q ss_pred C
Q 012699 418 H 418 (458)
Q Consensus 418 ~ 418 (458)
.
T Consensus 357 ~ 357 (942)
T KOG0973|consen 357 K 357 (942)
T ss_pred H
Confidence 3
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.3e-30 Score=216.47 Aligned_cols=278 Identities=16% Similarity=0.256 Sum_probs=225.4
Q ss_pred CCCCeEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 146 HTSPISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
..+.|.+++|+|...+ +|+.+ .-.+.||+..+..... ........+.++.|. .+|.++++|...|.|+++|..+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k--~~srFk~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK--TFSRFKDVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh--hHHhhccceeEEEee-cCCeEEEccCCcCcEEEeccccH
Confidence 3468999999996544 44433 3579999987765543 233446778999998 89999999999999999997776
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
..+..+..+. .++....|+|++..+++.+.|+ +.+++||+.+... ...+.+|.+.|.|.+|+|.
T Consensus 101 ~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd------------~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 101 VILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDD------------KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHHHHHhhcc--CceeEEEecccCCeEEEecCCC------------ceEEEEEcCCcEE--EEEecCCcceeEeeccccC
Confidence 6677777766 7899999999888766665555 5999999998775 4556799999999999995
Q ss_pred -CCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 305 -GKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 305 -~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
+..+++|+.||.|++||++.. ..+..+ .|..+|..+.+-|.|..+++++.. .+++||+.++.+... ..
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~--------~~ 234 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLT--------SM 234 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehh--------hh
Confidence 558899999999999999986 555555 589999999999999999988754 799999997765432 22
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
..|...|+++.+..++..|++++-|+.+++||+.+.+ ...-....++|.+++.+|+++.++.|..||.+.+
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 3488889999999999999999999999999976553 3333456789999999999999999999998765
No 92
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.3e-28 Score=213.44 Aligned_cols=402 Identities=14% Similarity=0.126 Sum_probs=283.2
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccccc---------ccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---------TTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
-+.+|.|+|| +.+...||.+..|+.|.||+.....+. ..+.+++|++. ..|.+.+.+|
T Consensus 24 ~Ps~I~slA~-s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~------------~RLFS~g~sg 90 (691)
T KOG2048|consen 24 KPSEIVSLAY-SHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG------------GRLFSSGLSG 90 (691)
T ss_pred eccceEEEEE-eccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC------------CeEEeecCCc
Confidence 4677999999 888888999999999999999877665 34445666633 4567777889
Q ss_pred cccccccccccCCc--ccceeeeccCCCCcCCCcceeccCCCeeee--------eeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699 94 SISPSKLEFEDVGA--GDIIQMFNDGLYTENGRDAQGEEDFPEVKV--------DFLETFLGHTSPISCCRFSSSGNNIA 163 (458)
Q Consensus 94 ~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~l~ 163 (458)
+|.-||+....... .........++.+|.+..++.+-+++.+.. +..+.|...+++|.+++|+|++..|+
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE
Confidence 99999986533111 111112245566788888877766664433 34455666789999999999999999
Q ss_pred EEeCCCcEEEEecCCCCCCCcc-----cccc-CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 164 SASVDGTVRIWTYDSSTPASRN-----ATIY-CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 164 s~~~dg~v~iwd~~~~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
+|+.||.|++||...+...... .... ...-|+++.|- ....|++|...|+|.+||...+.++..+..+. .
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--a 246 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD--A 246 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhh--c
Confidence 9999999999999887654311 1111 22347788876 45579999999999999999999999888877 6
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 315 (458)
.|.+++..+++..+++++.|+ .+..|...+.+. +.......|...+.+++..++ .+++|+.|.
T Consensus 247 dVl~Lav~~~~d~vfsaGvd~-------------~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~ 311 (691)
T KOG2048|consen 247 DVLALAVADNEDRVFSAGVDP-------------KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDF 311 (691)
T ss_pred ceeEEEEcCCCCeEEEccCCC-------------ceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceee
Confidence 899999999999999999985 676666655433 222223456667888888866 778888887
Q ss_pred eEEEEeCCCCc-----------------------eeeee----------------------------eCCCCCeEEEEEc
Q 012699 316 MIHMFDMSAGL-----------------------QITGW----------------------------PAHDSAISSILFG 344 (458)
Q Consensus 316 ~i~v~d~~~~~-----------------------~~~~~----------------------------~~~~~~v~~~~~~ 344 (458)
.+.+-..+..+ .+..+ ......|.+.+.+
T Consensus 312 ~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiS 391 (691)
T KOG2048|consen 312 TLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAIS 391 (691)
T ss_pred EEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccC
Confidence 77665433200 00000 1123468889999
Q ss_pred CCCCEEEEecCCCeEEEEeccCCCee----------------------------E--------Eee--cC-----CcccC
Q 012699 345 PDETSIFSLGSDGKIIEWSLQNQGQV----------------------------L--------WTR--NC-----SRFCD 381 (458)
Q Consensus 345 ~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------~--------~~~--~~-----~~~~~ 381 (458)
|+|++++.+.- ..+++|.+...... + ... .. .....
T Consensus 392 Pdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~ 470 (691)
T KOG2048|consen 392 PDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQ 470 (691)
T ss_pred CCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccc
Confidence 99999887763 23455544421000 0 000 00 00011
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC-CCeEEEecCCCcEEEEeC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT-LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~l 457 (458)
+......|..+..||+|++||+.+..+.|++|++++.+.......-...|+.++|+|. .+.|+.+..|+.|.-||+
T Consensus 471 ~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 471 SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred cccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 2235567899999999999999999999999999987654443344588999999965 458888899999998887
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.7e-30 Score=216.65 Aligned_cols=294 Identities=15% Similarity=0.228 Sum_probs=230.0
Q ss_pred HHHHHHhhccccCCCcceeeeeeccCCCce--eeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEe
Q 012699 10 LEEKEAQLSRLKNNSETIKYANIGQTKNST--LASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFAT 87 (458)
Q Consensus 10 ~~~~~~~~~~l~~h~~~i~~~~~~s~~~~~--l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (458)
+++.++....... .+.|+.++| +|...+ .+++| -.+.|++..+......+..+. .....+.+..++++++
T Consensus 13 ~w~~~~~~~~~ke-~~~vssl~f-sp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk----~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 13 YWRQETFPPVHKE-HNSVSSLCF-SPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFK----DVVYSVDFRSDGRLLA 84 (487)
T ss_pred hhhhhcccccccc-cCcceeEec-CCCCCCceEEecc--cEEEEEecchhhhhhhHHhhc----cceeEEEeecCCeEEE
Confidence 3444433333333 456999999 886654 44444 667777776655443222221 1123366777899999
Q ss_pred eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEe
Q 012699 88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASAS 166 (458)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~ 166 (458)
.|...|.++++|+..+. .++.+.+|+.+|..+.|+|+ +..+++|+
T Consensus 85 aGD~sG~V~vfD~k~r~----------------------------------iLR~~~ah~apv~~~~f~~~d~t~l~s~s 130 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRV----------------------------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGS 130 (487)
T ss_pred ccCCcCcEEEeccccHH----------------------------------HHHHHhhccCceeEEEecccCCeEEEecC
Confidence 99999999999954422 56678899999999999995 56688899
Q ss_pred CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeec
Q 012699 167 VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~ 245 (458)
.|+.+++||+.+... ......|..-|.+.+|+|.++.++++|+.||.|++||+++. ..+.++.. ..+|..+.+.
T Consensus 131 Dd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh---g~pVe~vl~l 205 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH---GCPVESVLAL 205 (487)
T ss_pred CCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC---CCceeeEEEc
Confidence 999999999988763 33556678899999999999999999999999999999987 44444443 3689999999
Q ss_pred CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 325 (458)
|.|..+++++.+ .+++||+.++....... ..|...|+|+++..++..|++|+-|+.+++||+.+-
T Consensus 206 psgs~iasAgGn--------------~vkVWDl~~G~qll~~~-~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 206 PSGSLIASAGGN--------------SVKVWDLTTGGQLLTSM-FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred CCCCEEEEcCCC--------------eEEEEEecCCceehhhh-hcccceEEEEEeecCCceEeecccccceEEEEccce
Confidence 999999999986 99999999766554443 247789999999999999999999999999998888
Q ss_pred ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+.+..+. -.++|.+++.+|++..++.|..||.+.+=+...
T Consensus 271 Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 271 KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 8888876 478999999999999999999999887765443
No 94
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.2e-28 Score=207.56 Aligned_cols=410 Identities=13% Similarity=0.116 Sum_probs=283.6
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecC---cceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNE---ESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d---~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
..|..-...|+|++|...++.-++..-+| ..+.+|+.+.+...+++.. +++ ..++..|-+....++.....+.
T Consensus 148 ~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~---sne-~v~~a~FHPtd~nliit~Gk~H 223 (626)
T KOG2106|consen 148 HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT---SNE-VVFLATFHPTDPNLIITCGKGH 223 (626)
T ss_pred eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee---ccc-eEEEEEeccCCCcEEEEeCCce
Confidence 34445566799999955555555554444 4456788877766555442 222 2233444444444444555678
Q ss_pred ccccccccccCC------cccceeeeccCCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEE
Q 012699 95 ISPSKLEFEDVG------AGDIIQMFNDGLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNI 162 (458)
Q Consensus 95 i~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l 162 (458)
+.+|+++..... ..+..+...++.|.++|..+ ++...+.+.+ +..+....|.+.|.+++.-.+|.+
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl- 301 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVI-TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL- 301 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEE-eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-
Confidence 888877643210 00111455677888888755 4445555554 344444599999999999999965
Q ss_pred EEEeCCCcEEEEecCCCCCCC---------------------------------------ccccccCCCceEEEEEecCC
Q 012699 163 ASASVDGTVRIWTYDSSTPAS---------------------------------------RNATIYCGTEIMSLEWECKS 203 (458)
Q Consensus 163 ~s~~~dg~v~iwd~~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~~~~~ 203 (458)
++|+.|+.|..||-. -+... ......|..+.+.++.+ ++
T Consensus 302 lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps 379 (626)
T KOG2106|consen 302 LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PS 379 (626)
T ss_pred eecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CC
Confidence 559999999999821 11100 01122344567777777 66
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
.+.+++++.|+.+++|+ ..++..+.... .++.++.|+|.+ .++.+... |...+.|.++...
T Consensus 380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~-------------G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTAT-------------GRWFVLDTETQDL 440 (626)
T ss_pred hhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeecc-------------ceEEEEeccccee
Confidence 77899999999999999 55555554443 478999999999 88888776 6999999998655
Q ss_pred eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
+...+ . ..++++++|+|+|.+||+|+.|+.|++|-+.. +...... +.+..+|+.+.|++|+++|.+-+.|-.|..
T Consensus 441 v~~~~-d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLy 517 (626)
T KOG2106|consen 441 VTIHT-D--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILY 517 (626)
T ss_pred EEEEe-c--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEE
Confidence 55443 2 56799999999999999999999999999865 3333332 234489999999999999999999999999
Q ss_pred EeccCCCeeEEeecCC---------cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---cccCCCCC
Q 012699 362 WSLQNQGQVLWTRNCS---------RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---MRTLPHGA 429 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~~h~~ 429 (458)
|.....++....+... -..-...+...+..++-+...+++|+|...|.|++|...-.+.. ....+|..
T Consensus 518 W~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~ 597 (626)
T KOG2106|consen 518 WKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSS 597 (626)
T ss_pred EccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccc
Confidence 9443322211110000 00011345566777888889999999999999999998654433 33448999
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.|++++|.-+...|++.+.|..|..|++
T Consensus 598 ~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999998888888889999999987
No 95
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.8e-29 Score=227.12 Aligned_cols=270 Identities=19% Similarity=0.233 Sum_probs=203.9
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC----------C-ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA----------S-RNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~----------~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
|-..|+....++++..+++++.+.....|+...+... . ......|...|.+++|+|.++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3345566666777666777777777777765433211 0 1123457789999999965788999999999
Q ss_pred cEEEEEcCCCc-------eeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 215 GIKAWNVDAKR-------VVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 215 ~i~~wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
+|++||+.++. .+..+..+ ...|.+++|+|++ ..+++++.| +.|++||+++++....
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH--~~~V~~l~f~P~~~~iLaSgs~D-------------gtVrIWDl~tg~~~~~ 163 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGH--TKKVGIVSFHPSAMNVLASAGAD-------------MVVNVWDVERGKAVEV 163 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCC--CCcEEEEEeCcCCCCEEEEEeCC-------------CEEEEEECCCCeEEEE
Confidence 99999997653 33444444 3789999999986 688888888 5999999999887766
Q ss_pred eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCC-eEEEEEcCCCCEEEEec----CCCeEEE
Q 012699 287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA-ISSILFGPDETSIFSLG----SDGKIIE 361 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~----~dg~i~i 361 (458)
+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++
T Consensus 164 l--~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 164 I--KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred E--cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 5 467788999999999999999999999999999999999999999765 45678999887877654 4799999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccC-CCCCcEEEEEECCC
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPT 439 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 439 (458)
||+++...+..... ......+....|++++++|++++ +|+.|++||+..+....... .+..++..++|.|.
T Consensus 242 WDlr~~~~p~~~~~-------~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 242 WDTRKMASPYSTVD-------LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeCCCCCCceeEec-------cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 99987654332211 11223456678999999999887 59999999998875443322 35567788888885
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=223.80 Aligned_cols=281 Identities=15% Similarity=0.239 Sum_probs=232.7
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCCcE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADGGI 216 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i 216 (458)
+..+.+.||...|..+++.+.. .++++|.||++++|+-...+.........+.+-|.. +++.+.++..+++|+.|.++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3667889999999999987654 799999999999999877666543344445555555 77775566679999999999
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
.+|...+..+...+..|. ..|.++....++. +++++.|. ++++|-..... .. +.+|+..|
T Consensus 84 ~v~~~~~~~P~~~LkgH~--snVC~ls~~~~~~-~iSgSWD~-------------TakvW~~~~l~--~~--l~gH~asV 143 (745)
T KOG0301|consen 84 IVFKLSQAEPLYTLKGHK--SNVCSLSIGEDGT-LISGSWDS-------------TAKVWRIGELV--YS--LQGHTASV 143 (745)
T ss_pred EEEecCCCCchhhhhccc--cceeeeecCCcCc-eEeccccc-------------ceEEecchhhh--cc--cCCcchhe
Confidence 999999999999998887 7899999888887 89999995 99999876432 22 56899999
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
.+++.-|++ .+++|+.|.+|++|.- ++.++++.+|.+.|+.+++-|++ .|++++.||.|++|++.. +.+.
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l~----- 213 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVLL----- 213 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC-ceee-----
Confidence 999999988 8899999999999985 78899999999999999998876 688999999999999953 3322
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
...+|...+.++...+++..++++++|++++||+.... .+...|. -.|+++.+-++|. +++|+.||.||||
T Consensus 214 ----~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~---~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 214 ----EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDEC---VQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred ----eeeccceEEEEEEecCCCCeEEEecCCceEEEeecCce---EEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 33478888999999999999999999999999999832 3333344 4899999999887 7788999999999
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
..
T Consensus 286 T~ 287 (745)
T KOG0301|consen 286 TV 287 (745)
T ss_pred Ee
Confidence 75
No 97
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.4e-30 Score=199.33 Aligned_cols=244 Identities=18% Similarity=0.317 Sum_probs=202.0
Q ss_pred CCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 146 HTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 146 h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
-.+.+..++|++. .+.+++++.||++++||+..... .......|..+|.++.|++...+.+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~ 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC
Confidence 3567899999996 45688899999999999543332 234556788999999999888999999999999999999999
Q ss_pred ceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (458)
+.+.++..+. ..|....|+|... .+++++.| |.+++||++.......+ +.|...+.|+.|+.
T Consensus 138 ~Sv~Tf~gh~--~~Iy~a~~sp~~~nlfas~Sgd-------------~~l~lwdvr~~gk~~~i--~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 138 NSVQTFNGHN--SCIYQAAFSPHIPNLFASASGD-------------GTLRLWDVRSPGKFMSI--EAHNSEILCCDWSK 200 (311)
T ss_pred cceEeecCCc--cEEEEEecCCCCCCeEEEccCC-------------ceEEEEEecCCCceeEE--EeccceeEeecccc
Confidence 9999988866 7899999999654 67777777 69999999876554444 46767899999998
Q ss_pred -CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 304 -NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 304 -~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
+...+++|+.|+.|++||+++ ..++..+.+|.-.|+.+.|||. ...|++++.|-+++|||...+.....
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e-------- 272 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIE-------- 272 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhh--------
Confidence 567889999999999999988 5678899999999999999994 45899999999999999986543332
Q ss_pred CCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEc
Q 012699 381 DPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~ 415 (458)
....|...+..+.||+ ++.++|..+.|+.++||+.
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2224667788899998 6789999999999999984
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=4.7e-30 Score=219.26 Aligned_cols=312 Identities=16% Similarity=0.235 Sum_probs=218.6
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
.+|.+|+..|.++++ -|.|..++||+.|-+++.||++..... ..+..+.-+...+.-.+.++..+..+++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~-Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAV-DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeee-cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 478899999999999 999999999999999999998754322 111112222222222233333344444444444455
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEe
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWT 175 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd 175 (458)
++|-+- ..+.-....+. -+.-+..-+||...++|.+|+|+. ..++|++.||++||||
T Consensus 240 l~DRdG---------------------~~~~e~~KGDQ-YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 240 LLDRDG---------------------FEIVEFSKGDQ-YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred EEccCC---------------------ceeeeeeccch-hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 544221 11111000000 011334457999999999999964 5689999999999999
Q ss_pred cCCCCCCCc-ccc---ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee---eeccCCCCCCceeeeeecCCC
Q 012699 176 YDSSTPASR-NAT---IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV---CDLNTTDAFPSVLDLKCSPVE 248 (458)
Q Consensus 176 ~~~~~~~~~-~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~ 248 (458)
+...+.... ... ....-++..++|+ +++.++++|+.||.|.+|+..+.... ..-..|.....|+++.|+++|
T Consensus 298 v~~~k~q~qVik~k~~~g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTKPAGGKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cCCchhheeEEeeccCCCcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 976543211 111 1123468899999 78889999999999999997543321 222334433579999999999
Q ss_pred CeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEec------CCeEEEEe
Q 012699 249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAV------DGMIHMFD 321 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d 321 (458)
++|++-+.|. ++++||++..+ ++....--....+-+.++|||+.++|++|+. .|.+.+||
T Consensus 377 ~~LlSRg~D~-------------tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 377 NYLLSRGFDD-------------TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred chhhhccCCC-------------ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 9999999984 99999999754 3333332223345678999999999999864 47899999
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
..+...+..+......|..+.|+|.-+.|+.++.||++++|-=.+
T Consensus 444 ~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 444 RMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 999999999888888999999999888999999999999875443
No 99
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.7e-28 Score=222.69 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=169.0
Q ss_pred eeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 142 TFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.+.... .......|...|.+++|+|..+++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3679999999999999 8899999999999999999765321 112234577889999999766789999999999
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP- 294 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~- 294 (458)
|++||+++++....+..+. ..|.+++|+|++..+++++.| +.|++||+++++....+. .|..
T Consensus 150 VrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~--~H~~~ 212 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVE--AHASA 212 (493)
T ss_pred EEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEe--cCCCC
Confidence 9999999998887776654 679999999999999999988 599999999988877664 4433
Q ss_pred cEEEEEEccCCCEEEEEe----cCCeEEEEeCCCCc-eeeeeeCC-CCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCC
Q 012699 295 AITSLCFNHNGKILAASA----VDGMIHMFDMSAGL-QITGWPAH-DSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQ 367 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 367 (458)
....+.|.+++..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++++ .|+.|++||+.+.
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 345678888877777654 47899999998754 44433333 34566677899999999887 4999999999976
Q ss_pred Ce
Q 012699 368 GQ 369 (458)
Q Consensus 368 ~~ 369 (458)
..
T Consensus 293 ~~ 294 (493)
T PTZ00421 293 RL 294 (493)
T ss_pred ce
Confidence 53
No 100
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=9.8e-29 Score=222.87 Aligned_cols=382 Identities=15% Similarity=0.161 Sum_probs=289.3
Q ss_pred hccccCCCcceeeeeeccCCCc-eeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 17 LSRLKNNSETIKYANIGQTKNS-TLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
+..++---..|+.++| ..||. ++|+|+..|.+.+||.+..+++..+...+.. ...-..+-.....+++.+.|.++
T Consensus 237 l~sFk~d~g~VtslSF-rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~---sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 237 LMSFKQDWGRVTSLSF-RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG---SVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred EEEEEccccceeEEEe-ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC---CcccceecCCCceEeeccCCCce
Confidence 3344444588999999 66655 7788888899999999999887555533311 11124455567889999999999
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC-CCCCEEEEEeCCCcEEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS-SSGNNIASASVDGTVRIW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iw 174 (458)
++|-.+..+..+ +.++.-.||..|-.|++|. .+|..+.+++.|++.+.+
T Consensus 313 k~~vfD~~dg~p------------------------------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 313 KVWVFDSGDGVP------------------------------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eEEEeeCCCCcc------------------------------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 999877533210 1455567999999999998 688999999999999998
Q ss_pred ecCCCCCCCcc----------------ccccCCCceEEEEEecC----CCeEEEEEcCCCcEEEEEcCCCce-eeeccCC
Q 012699 175 TYDSSTPASRN----------------ATIYCGTEIMSLEWECK----SDRLLLIGTADGGIKAWNVDAKRV-VCDLNTT 233 (458)
Q Consensus 175 d~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~ 233 (458)
++......... .....-.+|..+++... -.+.+.+.-.+...+.|+.+.... ...+...
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 86432211000 00111235666665421 234555556677899999987664 2333222
Q ss_pred ---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-cCCCCCcEEEEEEccCCCEEE
Q 012699 234 ---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 234 ---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~ 309 (458)
.....+.+++.++-|+..+.|... |.|.+|++++|-....+. ...|..+|+.++...-++.++
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~-------------G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSK-------------GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccC-------------CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 123568899999999988888776 699999999998888772 357888999999999999999
Q ss_pred EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce
Q 012699 310 ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR 389 (458)
Q Consensus 310 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 389 (458)
+++.+|.+.+||..+...+..+.- ..++.++..+.....++.+..|-.|+++|+.+.+.+ ....+|...+
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv---------R~f~gh~nri 579 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV---------REFWGHGNRI 579 (910)
T ss_pred EccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh---------HHhhccccce
Confidence 999999999999998887777663 567888999888889999999999999999875432 2344688999
Q ss_pred eEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC-CcEEEEe
Q 012699 390 HEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD-HSVQVMS 456 (458)
Q Consensus 390 ~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~ 456 (458)
+.++|||||++|++++.|++|++||+.++..+ ....-..+++++.|+|+|.+|||+..| .-|++|.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lI-D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEeccCccee-eeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 99999999999999999999999999988543 333456789999999999999999988 5699995
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=7.6e-29 Score=227.33 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=230.4
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
|...+.+..|. ..++++++.|++|++||..++..+. .....|.+.|+++++. ..+.++++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~GH~g~V~~l~~~-~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLVGHFGGVWGLAFP-SGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEE-eeccCCCCCceeEEEe-cCCCEEEEEecCCcEEeEecCCCc
Confidence 56778888888 4589999999999999998877653 2356788999999998 578999999999999999999999
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
+...+..+. ..+.++... ...+++++.| .+|++|++.++..+..+. +|..+|.++..+ +
T Consensus 283 C~~~l~gh~--stv~~~~~~--~~~~~sgs~D-------------~tVkVW~v~n~~~l~l~~--~h~~~V~~v~~~--~ 341 (537)
T KOG0274|consen 283 CTHSLQGHT--SSVRCLTID--PFLLVSGSRD-------------NTVKVWDVTNGACLNLLR--GHTGPVNCVQLD--E 341 (537)
T ss_pred EEEEecCCC--ceEEEEEcc--CceEeeccCC-------------ceEEEEeccCcceEEEec--cccccEEEEEec--C
Confidence 999999776 566666654 3456667777 499999999999998875 488999999998 7
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
.++++|+.|++|++||+.++++++.+.+|...|.++.+.+. ..+++|+.|++|++||+++.... ......|
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c--------~~tl~~h 412 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC--------IHTLQGH 412 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh--------hhhhcCC
Confidence 79999999999999999999999999999999999988765 79999999999999999986311 1122234
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
...+. .+...+++|++++.|+.|++||..+++....+.+ |...|..+++. ...+++++.||.+++||+.
T Consensus 413 ~~~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 413 TSLVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred ccccc--ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 44443 3445788999999999999999999988888877 67899999887 4578899999999999974
No 102
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3.1e-28 Score=195.40 Aligned_cols=276 Identities=11% Similarity=0.175 Sum_probs=221.9
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
...|..+.|+|.+..|+.++.||++++||+...... ....+..++.+++|. +...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~---~~~~~~~plL~c~F~--d~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK---LKFKHGAPLLDCAFA--DESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh---hheecCCceeeeecc--CCceEEEeccCceEEEEEecCCcc
Confidence 567999999999999999999999999999887543 356788999999997 467799999999999999998876
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
... .. |..++.++.+.+....+++++.|. .|++||.+.......+. ....|.++..+ +.
T Consensus 88 ~~i-gt--h~~~i~ci~~~~~~~~vIsgsWD~-------------~ik~wD~R~~~~~~~~d---~~kkVy~~~v~--g~ 146 (323)
T KOG1036|consen 88 DQI-GT--HDEGIRCIEYSYEVGCVISGSWDK-------------TIKFWDPRNKVVVGTFD---QGKKVYCMDVS--GN 146 (323)
T ss_pred eee-cc--CCCceEEEEeeccCCeEEEcccCc-------------cEEEEeccccccccccc---cCceEEEEecc--CC
Confidence 432 23 337899999999999999999995 99999999754444443 23468877765 67
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC---eeEEeecCCcccC
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG---QVLWTRNCSRFCD 381 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~ 381 (458)
.|++|+.|..+.+||+++.....+.. .-.-.++++++-|++.-++.++-||.|.+=.+.... ......+|++...
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~ 226 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE 226 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence 89999999999999999865443222 234578999999988889999999999887766541 2223334444332
Q ss_pred -CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 382 -PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 382 -~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
....-.+|++++|+|--+.|++|+.||.|.+||+...+.+..+.+....|.+++|+.+|..||.++.
T Consensus 227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 2223457999999999999999999999999999999988888888889999999999999998864
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=9.3e-29 Score=229.86 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=227.1
Q ss_pred cCCCCeEEEEeCCCCCEEEEEe--CCCcEEEEecCCCC----------CCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 145 GHTSPISCCRFSSSGNNIASAS--VDGTVRIWTYDSST----------PASRNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
.+...|.+++.+|+|..++||+ .|+.++||+.+.-- +........|.+.|.|+.|+ +++++|++|+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S-~dG~~lAsGSD 89 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS-PDGSYLASGSD 89 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-CCCCeEeeccC
Confidence 3456799999999999999999 89999999864311 11111234467899999999 89999999999
Q ss_pred CCcEEEEEcCC-------C-----------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 213 DGGIKAWNVDA-------K-----------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 213 dg~i~~wd~~~-------~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
|+.|.+|.... + +....+..| ...|.+++|+|++.++++++.|. .|.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--~~DV~Dv~Wsp~~~~lvS~s~Dn-------------sVi 154 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--DSDVLDVNWSPDDSLLVSVSLDN-------------SVI 154 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecC--CCccceeccCCCccEEEEecccc-------------eEE
Confidence 99999999773 0 133444444 47899999999999999999995 999
Q ss_pred EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC------CCeEEEEEcCCCC
Q 012699 275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD------SAISSILFGPDET 348 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~ 348 (458)
+|+.++.+....+. +|...|..+.|+|-|+||++-+.|++|+||++.+....+.+..+- .-+..+.|||||.
T Consensus 155 iwn~~tF~~~~vl~--~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 155 IWNAKTFELLKVLR--GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred EEccccceeeeeee--cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 99999997777764 888999999999999999999999999999988766666665443 3578899999999
Q ss_pred EEEEecC----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-----CCC------------EEEEEeCC
Q 012699 349 SIFSLGS----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-----NGR------------RLLVTSGS 407 (458)
Q Consensus 349 ~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----~g~------------~l~~~~~~ 407 (458)
+|++.-. -.++.|.+-.+-+ .-....+|..++..+.|+| ..+ .+|+|+.|
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk---------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWK---------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred eecchhhccCCcceeEEEecCCce---------eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 9997643 3346666654332 1223457888999999998 111 57889999
Q ss_pred ccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 408 VRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 408 ~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++|-||.....+++.... -...+|.+++|+|||..|.++|.||+|.+..++
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 999999997665554433 245789999999999999999999999998764
No 104
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=225.56 Aligned_cols=274 Identities=21% Similarity=0.308 Sum_probs=227.1
Q ss_pred ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeee-eccCCCCeEEEEeCCCCCE
Q 012699 83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLET-FLGHTSPISCCRFSSSGNN 161 (458)
Q Consensus 83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~ 161 (458)
..++.+++.+.++.+|+..... .+.. +.||.+.|.++++..-+.+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~----------------------------------~i~~~l~GH~g~V~~l~~~~~~~~ 263 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGY----------------------------------LILTRLVGHFGGVWGLAFPSGGDK 263 (537)
T ss_pred cCeEEecCCCceeEEeecccce----------------------------------EEEeeccCCCCCceeEEEecCCCE
Confidence 4566777777777777754322 4444 8999999999999877889
Q ss_pred EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 162 IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
|++|+.|.++++||..++.+.. ....|...+.++... +.++++|+.|.+|++|++.++..+..+..+. .+|.+
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~--~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~--~~V~~ 336 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTH--SLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT--GPVNC 336 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEE--EecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceEEEecccc--ccEEE
Confidence 9999999999999999998865 344677888888754 6678889999999999999999999988744 78999
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEe
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFD 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d 321 (458)
+.++ +..+++++.| |.|++||+.+++++..+. +|...|.++.+.+. ..+++|+.|++|++||
T Consensus 337 v~~~--~~~lvsgs~d-------------~~v~VW~~~~~~cl~sl~--gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 337 VQLD--EPLLVSGSYD-------------GTVKVWDPRTGKCLKSLS--GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred EEec--CCEEEEEecC-------------ceEEEEEhhhceeeeeec--CCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence 9998 8899999998 599999999999999886 68899999988775 7999999999999999
Q ss_pred CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 322 MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 322 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+++. +++.++.+|..-+..+.+ .++.|++++.|++|++||..+++........ +...+..+++. ...
T Consensus 399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~--------~~~~v~~l~~~--~~~ 466 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR--------HVGGVSALALG--KEE 466 (537)
T ss_pred CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccC--------CcccEEEeecC--cce
Confidence 9999 999999999999877665 4679999999999999999987655432210 44567777665 578
Q ss_pred EEEEeCCccEEEEEccCCCcccccCCC
Q 012699 401 LLVTSGSVRAPIYQVRGHASGMRTLPH 427 (458)
Q Consensus 401 l~~~~~~~~i~i~~~~~~~~~~~~~~h 427 (458)
+++++.++.+++||++++........+
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhhhhc
Confidence 889999999999999998777666443
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.3e-29 Score=212.17 Aligned_cols=265 Identities=19% Similarity=0.352 Sum_probs=199.6
Q ss_pred ccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCC--------ccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 144 LGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPAS--------RNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
--|.+.|+.+.+.|.. ..+|+.+..+.|.|||........ ......|..+-.+++|++.....|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3599999999999965 456778889999999986543222 2244556666788999988889999999999
Q ss_pred cEEEEEcCCCce-----eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699 215 GIKAWNVDAKRV-----VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP 288 (458)
Q Consensus 215 ~i~~wd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~ 288 (458)
.|++||+..... ......+.+...|.+++|++... .+++++.+ +.+.|||++++.......
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-------------~~L~iwD~R~~~~~~~~~ 267 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-------------GKLMIWDTRSNTSKPSHS 267 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC-------------CeEEEEEcCCCCCCCccc
Confidence 999999975433 11222334447899999999766 45555555 599999999643333334
Q ss_pred cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEecc
Q 012699 289 LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 365 (458)
...|...++|++|+| ++..||+|+.|++|.+||+|+ .+++.++.+|...|.++.|+|+. ..|++++.|+.+.+||+.
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 468889999999999 567889999999999999998 56788999999999999999954 578899999999999998
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEE
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFL 444 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 444 (458)
.-+.... ... . .+| -.+.+...-||...|..+.|+|..+ .++
T Consensus 348 ~ig~eq~---------~ed----------a----------~dg--------ppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 348 RIGEEQS---------PED----------A----------EDG--------PPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred ccccccC---------hhh----------h----------ccC--------CcceeEEecCcccccccccCCCCCCeEEE
Confidence 5432110 000 0 000 0011122237999999999999998 678
Q ss_pred EecCCCcEEEEeCC
Q 012699 445 TGSADHSVQVMSLS 458 (458)
Q Consensus 445 s~~~dg~v~iw~l~ 458 (458)
|+++|+.+.||++.
T Consensus 391 SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 391 SVAEDNILQIWQMA 404 (422)
T ss_pred EecCCceEEEeecc
Confidence 99999999999873
No 106
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.1e-27 Score=220.49 Aligned_cols=250 Identities=17% Similarity=0.260 Sum_probs=188.5
Q ss_pred EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--------eeeccCCCCC
Q 012699 165 ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--------VCDLNTTDAF 236 (458)
Q Consensus 165 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--------~~~~~~~~~~ 236 (458)
|+.++.+++|+...... ......|...|.+++|+|.++.+|++|+.||.|++||+.++.. ...+.. |.
T Consensus 50 GG~~gvI~L~~~~r~~~--v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPP--VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--HK 125 (568)
T ss_pred CCceeEEEeeecCCCce--EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--CC
Confidence 56788999999765433 2234567789999999976688999999999999999986431 223333 33
Q ss_pred CceeeeeecCCCCeE-EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699 237 PSVLDLKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 315 (458)
..|.+++|+|++..+ ++++.| +.|++||+++++....+. +...|.+++|+|+|.+|++++.|+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~D-------------gtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFD-------------SFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCC-------------CeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEecCC
Confidence 689999999998765 577777 599999999988766654 346799999999999999999999
Q ss_pred eEEEEeCCCCceeeeeeCCCCCeEEE-----EEcCCCCEEEEecCCC----eEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699 316 MIHMFDMSAGLQITGWPAHDSAISSI-----LFGPDETSIFSLGSDG----KIIEWSLQNQGQVLWTRNCSRFCDPESSK 386 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 386 (458)
.|++||+++++.+..+.+|.+.+.+. .|++++.+|++++.|+ .|++||+++...++.... .....
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------ld~~~ 263 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS------IDNAS 263 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE------ecCCc
Confidence 99999999999999999998865433 3468888999888764 799999997554443221 11222
Q ss_pred CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCC
Q 012699 387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTL 440 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~ 440 (458)
..+......++|.++++|++|+.|++|++...... .....+..+..+++|.|..
T Consensus 264 ~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 264 APLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred cceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 33333444567899999999999999999765311 1112466788999999974
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=197.87 Aligned_cols=244 Identities=20% Similarity=0.304 Sum_probs=203.5
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+..+..|..+|+|+|+ ++.++|||+.|++|+|+|.....
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~-------------------------------------- 74 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRK-------------------------------------- 74 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchh--------------------------------------
Confidence 5567889999999999 89999999999999999876552
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC--EEEEEeCCCcEEEE
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN--NIASASVDGTVRIW 174 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw 174 (458)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|
T Consensus 75 ------------------------------------------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 75 ------------------------------------------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ------------------------------------------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 1123346899999999999764 89999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
+........ ....|.+.|+.++.+ |.+.+.++.+.|+.+++||+-.|+......... ....+.|+|.|.+++..
T Consensus 113 ~~~~W~~~~--slK~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 113 RVGSWELLK--SLKAHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---KATLVSWSPQGDHFVVS 186 (362)
T ss_pred EcCCeEEee--eecccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCC---cceeeEEcCCCCEEEEE
Confidence 998775543 445677789999999 788899999999999999999998766655543 23459999999999988
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
..+ .|-+|.+.+......+... ..+.|+.|. ++.+|++|..|+.|.+||..+..+...+.+|
T Consensus 187 ~~~--------------~i~i~q~d~A~v~~~i~~~---~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 187 GRN--------------KIDIYQLDNASVFREIENP---KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred ecc--------------EEEEEecccHhHhhhhhcc---ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc
Confidence 886 8999999887776665432 456777775 4568999999999999999999999999999
Q ss_pred CCCeEEEEE--cCCCCEEEEecCCCeEEEEeccCC
Q 012699 335 DSAISSILF--GPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 335 ~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
...|-.+.+ .|++.+|+++|.||.|++||++..
T Consensus 249 ~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 249 ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999985 567889999999999999999865
No 108
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=220.15 Aligned_cols=288 Identities=17% Similarity=0.242 Sum_probs=231.2
Q ss_pred cCCCCeE---EEEeC-CCCCEEEEEeCCCcEEEEecCCCCCC----CccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699 145 GHTSPIS---CCRFS-SSGNNIASASVDGTVRIWTYDSSTPA----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI 216 (458)
Q Consensus 145 ~h~~~v~---~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 216 (458)
.|...|. .+..+ |.+++|+|||.||.|++|++...... .......|...|..+... .+++.|++++.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~-~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILC-GNGKTLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhh-cCCCceEEecCCceE
Confidence 3445555 44444 46778999999999999998654432 112233455678888777 678899999999999
Q ss_pred EEEEcCCC--ceeeeccCCCCCCceeeeee-cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEE-----
Q 012699 217 KAWNVDAK--RVVCDLNTTDAFPSVLDLKC-SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTV----- 286 (458)
Q Consensus 217 ~~wd~~~~--~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~----- 286 (458)
++|+...+ -+..++..|. ..|.++++ .++...+++|+-|+ .|.+||+.++.. +..
T Consensus 98 K~W~~~~~~~~c~stir~H~--DYVkcla~~ak~~~lvaSgGLD~-------------~IflWDin~~~~~l~~s~n~~t 162 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAKNNELVASGGLDR-------------KIFLWDINTGTATLVASFNNVT 162 (735)
T ss_pred EEeecccCcchhHhhhhccc--chheeeeecccCceeEEecCCCc-------------cEEEEEccCcchhhhhhccccc
Confidence 99999887 4666666666 67999999 88888999999995 999999997632 111
Q ss_pred -eecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 287 -LPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 287 -~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
-.+. ++...|.+++.++.|..|++|+..+.+++||.++++.+..+++|...|.++..++||..++++|.||+|++||+
T Consensus 163 ~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 163 VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 1122 56778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 444 (458)
..+..... ...|...++++..+|+-..+++|+.++.|+.-|+.+......+.....+|..+..+.+.+-+-
T Consensus 243 gqQrCl~T---------~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~W 313 (735)
T KOG0308|consen 243 GQQRCLAT---------YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVW 313 (735)
T ss_pred cccceeee---------EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCce
Confidence 87644332 234667799999999999999999999999999998755555666777888888876655556
Q ss_pred EecCCCcEEEEeC
Q 012699 445 TGSADHSVQVMSL 457 (458)
Q Consensus 445 s~~~dg~v~iw~l 457 (458)
++..|+.|+-|.+
T Consensus 314 vtTtds~I~rW~~ 326 (735)
T KOG0308|consen 314 VTTTDSSIKRWKL 326 (735)
T ss_pred eeeccccceecCC
Confidence 7778889998864
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.6e-28 Score=194.32 Aligned_cols=270 Identities=16% Similarity=0.219 Sum_probs=207.4
Q ss_pred eeeeCCc-cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699 75 WASSRPA-LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC 153 (458)
Q Consensus 75 ~~~~~~~-~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 153 (458)
-++.|++ ...+++.+|+|+++++|+++.... . .-+....|.++|.++
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-------------------~-------------~~ka~~~~~~PvL~v 78 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-------------------L-------------VPKAQQSHDGPVLDV 78 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCc-------------------c-------------cchhhhccCCCeEEE
Confidence 3455555 556777999999999999876310 0 012345799999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
+|+.||..+++|+.|+.+++||+.+++.. ....|..+|..+.|-+. ....|++|+.|.+|+.||.+...++.++..
T Consensus 79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~---~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 79 CWSDDGSKVFSGGCDKQAKLWDLASGQVS---QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred EEccCCceEEeeccCCceEEEEccCCCee---eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 99999999999999999999999999654 35668899999999843 235899999999999999999999888887
Q ss_pred CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (458)
++ +++++..- ..+++.+..++ .|.+|+++++..........-.-.++|++..++....+.|+
T Consensus 156 Pe---RvYa~Dv~--~pm~vVata~r-------------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs 217 (347)
T KOG0647|consen 156 PE---RVYAADVL--YPMAVVATAER-------------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS 217 (347)
T ss_pred cc---eeeehhcc--CceeEEEecCC-------------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee
Confidence 64 56665543 34555555554 99999997654433221122334589999999988889999
Q ss_pred cCCeEEEEeCCCC--ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 313 VDGMIHMFDMSAG--LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 313 ~dg~i~v~d~~~~--~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
-+|.+.+..+..+ +.-..++.|.. .|++|+|+|.-..|+|++.||++.+||-.... ++..
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---------kLk~ 288 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---------KLKT 288 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---------hhhc
Confidence 9999999998876 44445555542 57889999988899999999999999987543 3334
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
.+.+..+|++.+|+.+|.++|.+.+
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEEee
Confidence 4567888999999999999987653
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.8e-28 Score=216.46 Aligned_cols=360 Identities=14% Similarity=0.170 Sum_probs=251.2
Q ss_pred eeeeccCCCceeeeeecCcceEEeccccccccccce----eee--eccCCceeeeeCCc----cceeEeeccCCCccccc
Q 012699 29 YANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT----HMG--SAEMGQTWASSRPA----LSRFATNMSGNDSISPS 98 (458)
Q Consensus 29 ~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~----~~~~l~~~~~~~~i~~~ 98 (458)
++.| .+..+.|..--+|.++.|||+......+... |.+ |.-..--..+..+. ...-+.+++.|++|++|
T Consensus 329 A~~F-det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQF-DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEe-cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 4578 8889999999999999999998765553332 111 21110000011111 22347899999999999
Q ss_pred ccccccCCcccceeee----ccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 99 KLEFEDVGAGDIIQMF----NDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
++.++........... ..+.+..+...+.--...+... +.....-+-.-.+++++.+|+|++||+|..-|+++||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fd-ka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFD-KALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCccc-ccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 9988543222111111 0111111111111000000000 1122223455679999999999999999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCC--C
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVE--P 249 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~ 249 (458)
++...+... ....|..+|.|+.|+.+ ...+|++++.|..|++||+...- ++.++..|. ..|+++.|.-++ .
T Consensus 487 ~Lq~l~~~~--~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS--ssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 487 DLQELEYTC--FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS--SSITSVKFACNGLNR 562 (1080)
T ss_pred Eehhhhhhh--heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--cceeEEEEeecCCce
Confidence 998766543 34568899999999854 34689999999999999987543 444554444 789999998887 6
Q ss_pred eEEEeecccCCCCcceeeccceeEEEEECCC----CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699 250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 325 (458)
.+++++.|+ . ..|+... +.........-....+..++..|..+++++++.|..|+|||+.++
T Consensus 563 ~MiscGADk-------------s-imFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 563 KMISCGADK-------------S-IMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred EEEeccCch-------------h-hheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 788888874 3 3333322 222111111112346889999999999999999999999999999
Q ss_pred ceeeeee---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699 326 LQITGWP---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL 402 (458)
Q Consensus 326 ~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 402 (458)
+..+.|+ +|++....+...|.|.|+++...|.++.++|..+++.+. ...+|...|+.+.|.+|-+.|+
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---------~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---------QMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---------hhcCcchheeeeeecccchhhe
Confidence 9999887 466788899999999999999999999999999875443 2346888899999999999999
Q ss_pred EEeCCccEEEEEccC
Q 012699 403 VTSGSVRAPIYQVRG 417 (458)
Q Consensus 403 ~~~~~~~i~i~~~~~ 417 (458)
+.++||.|.||.+..
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 999999999999863
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=7.2e-28 Score=201.70 Aligned_cols=252 Identities=17% Similarity=0.268 Sum_probs=210.5
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
.+..|.||+..|+.+.|+|+...+++++.|..|+||....... ......|..+|+.+..+ +.+.||++++.||+..+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--~~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~F 329 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--PTSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAF 329 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC--ccccccccccceeeeec-cCCcEEEEecCCceEEE
Confidence 6678999999999999999999999999999999999876654 33566788999999999 78999999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
.|++++..+.........-.+++.+|+|||.+|.++..| |.+++||+.+......| ++|.++|..
T Consensus 330 sd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d-------------~~vkiwdlks~~~~a~F--pght~~vk~ 394 (506)
T KOG0289|consen 330 SDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD-------------GVVKIWDLKSQTNVAKF--PGHTGPVKA 394 (506)
T ss_pred EEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC-------------ceEEEEEcCCccccccC--CCCCCceeE
Confidence 999999988776654333568999999999999999998 59999999998866665 579999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
++|+.+|-+|++++.|+.|++||++..+...++...+ .++.++.|.+.|.+|+.++.|=.|++++-.+.. ..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-------W~ 467 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-------WT 467 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc-------ce
Confidence 9999999999999999999999999988777776433 379999999999999999888666666644321 11
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
.......+.+..+.+.|....+++++++-|..++++.+
T Consensus 468 ~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 468 EIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 22222345566788999999999999999988888754
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-28 Score=209.51 Aligned_cols=284 Identities=15% Similarity=0.245 Sum_probs=235.4
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc---cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR---NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.|..-|.++.++...++++||+. |.|+|||+........ ........-|.++... ++++.|++|++-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-PDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEec-CCCceEEeccccceeeeeec
Confidence 58888999999999999999985 7899999976543222 2223344668888888 78999999999999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
.........+.......++.++.+||.+..+++..| |.|.|||+.+...+..+ .+|...+.|+.+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsd-------------GnI~vwDLhnq~~Vrqf--qGhtDGascIdi 559 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD-------------GNIAVWDLHNQTLVRQF--QGHTDGASCIDI 559 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC-------------CcEEEEEcccceeeecc--cCCCCCceeEEe
Confidence 887765544444444578899999999999998888 69999999998777776 489999999999
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
+++|..|.+|+.|.+|+.||+++++.+.... ....|.++..+|++.+|+.|-.++.+.+.......+ ..
T Consensus 560 s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----------yq 628 (705)
T KOG0639|consen 560 SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----------YQ 628 (705)
T ss_pred cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc----------ee
Confidence 9999999999999999999999988776643 467899999999999999999999988887765422 22
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
...|...|.++.|.+.|+++++.+.|+.+..|...-+..+... ....+|.++..+.|.++++||+.|..-.||.+
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3357888999999999999999999999999998877544332 45689999999999999999999998888875
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.7e-28 Score=195.66 Aligned_cols=256 Identities=15% Similarity=0.234 Sum_probs=202.8
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec------CCCCC-------------------------------
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY------DSSTP------------------------------- 181 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~------~~~~~------------------------------- 181 (458)
++.++.||.+.|++++|++.+.++++++.|++..||.. .....
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 67788899999999999999999999999999999972 11000
Q ss_pred -CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699 182 -ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260 (458)
Q Consensus 182 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 260 (458)
........|...|.+..|. ..++.+++++.|.+..+||++++..+..+..++ ...+.++-+|..+++++.+.|.
T Consensus 262 RvPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd--~ELtHcstHptQrLVvTsSrDt-- 336 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHD--SELTHCSTHPTQRLVVTSSRDT-- 336 (481)
T ss_pred eeeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcc--hhccccccCCcceEEEEeccCc--
Confidence 0001112344567777887 788999999999999999999999999998887 5788899999999999999985
Q ss_pred CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeE
Q 012699 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAIS 339 (458)
Q Consensus 261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~ 339 (458)
+.++||++.. ....-.+.+|...|++..|..+. .+++|+.|.+|++||+++. .++.+++ ...+++
T Consensus 337 -----------TFRLWDFRea-I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~N 402 (481)
T KOG0300|consen 337 -----------TFRLWDFREA-IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPAN 402 (481)
T ss_pred -----------eeEeccchhh-cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccc
Confidence 9999999842 22222346899999999998765 5899999999999999884 5566665 367899
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC--CEEEEEeCCccEEEEEccC
Q 012699 340 SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG--RRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~~~~i~i~~~~~ 417 (458)
.++.+..++.++.--++..|++||+....... . .......|...|.+++|..+- .-|++++-|..+.-|.+..
T Consensus 403 Rvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-l----PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 403 RVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-L----PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred eeEeecCCceEEeccCCceEEEEecCCCcccc-C----CcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 99999988889888888899999998653221 1 111345788889999998654 4578888999999998865
Q ss_pred C
Q 012699 418 H 418 (458)
Q Consensus 418 ~ 418 (458)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 4
No 114
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=9.7e-28 Score=191.24 Aligned_cols=292 Identities=14% Similarity=0.243 Sum_probs=224.1
Q ss_pred ccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC-------------CccccccCCCceEEEEEecCCCeEEEE
Q 012699 144 LGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA-------------SRNATIYCGTEIMSLEWECKSDRLLLI 209 (458)
Q Consensus 144 ~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 209 (458)
+.|.+.|+++...+ .|+++++|+.||.|.+||++..... .+.....|.-.|..+.|.|.+..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999988 6899999999999999999764411 111222344579999999999999999
Q ss_pred EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
++.|.++++||..+.+....++.. ..|++-+++|-.. +++++..+ -.|++.|+.++.....
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me---~~VYshamSp~a~sHcLiA~gtr~-------------~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMAMSHCLIAAGTRD-------------VQVRLCDIASGSFSHT 183 (397)
T ss_pred ccccceEEEeecccceeeEEeecC---ceeehhhcChhhhcceEEEEecCC-------------CcEEEEeccCCcceee
Confidence 999999999999999988877766 4788888888543 45555555 3999999999998887
Q ss_pred eecCCCCCcEEEEEEccCCCE-EEEEecCCeEEEEeCCCC-ceee--------------eeeCCCCCeEEEEEcCCCCEE
Q 012699 287 LPLGEDPPAITSLCFNHNGKI-LAASAVDGMIHMFDMSAG-LQIT--------------GWPAHDSAISSILFGPDETSI 350 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~v~d~~~~-~~~~--------------~~~~~~~~v~~~~~~~~~~~l 350 (458)
+. +|.+.|.++.|+|...+ |++|+.||.|++||++.- -+.. .-.+|.+.++.++|+.++.++
T Consensus 184 Ls--GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 184 LS--GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred ec--cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 74 89999999999997765 678999999999999753 2222 234678899999999999999
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~ 430 (458)
++++.|..+++|+..++........ +..........+. +. +.+...++.--.++.+.++.+-.+..+..+..|...
T Consensus 262 ~~~gtd~r~r~wn~~~G~ntl~~~g--~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~ 337 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGRNTLREFG--PIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR 337 (397)
T ss_pred hhccCccceEEeecccCcccccccc--cccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence 9999999999999998755332111 1111111111111 22 333333433344588999999888888888889889
Q ss_pred EEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 431 ITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 431 v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|.+.++-|+-+.+.++..|+.|..|..
T Consensus 338 i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 338 INCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeEEeecCchhhhhccccCCccccccc
Confidence 999999999999999999999999964
No 115
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.5e-27 Score=216.40 Aligned_cols=235 Identities=11% Similarity=0.129 Sum_probs=175.8
Q ss_pred eeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCC-C-----ccccccCCCceEEEEEecCCCeEEEEEc
Q 012699 139 FLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPA-S-----RNATIYCGTEIMSLEWECKSDRLLLIGT 211 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~-~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 211 (458)
.+..+.+|.++|.+++|+|+ +.+|++|+.|++|+|||+.+.... . ......|...|.+++|+|....++++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 55678899999999999996 789999999999999999764321 0 1123456788999999965556678999
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
.|++|++||+++++....+... ..+.+++|+|+|..+++++.+ +.|++||+++++.+..+. +
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~---~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~~i~tl~--g 207 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMP---KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQEIASSFH--I 207 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecC---CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCcEEEEEe--c
Confidence 9999999999999877666432 579999999999999988877 499999999998887664 5
Q ss_pred CCCcEEE-----EEEccCCCEEEEEecCC----eEEEEeCCC-CceeeeeeC--CCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699 292 DPPAITS-----LCFNHNGKILAASAVDG----MIHMFDMSA-GLQITGWPA--HDSAISSILFGPDETSIFSLGSDGKI 359 (458)
Q Consensus 292 ~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~v~d~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 359 (458)
|.+.+.. ..|++++.+|++++.|+ .|++||+++ .+++..+.. +.+.+......+++.++++|+.|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 5544332 33568888999887764 799999995 556655432 33344444445578899999999999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
++|++.... ... .....+..+...++|.|...
T Consensus 288 r~~e~~~~~-~~~-------l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 288 RYYQHSLGS-IRK-------VNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEccCCc-EEe-------ecccccCCCccceEEccccc
Confidence 999997642 211 11222445667789988643
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.6e-29 Score=191.68 Aligned_cols=257 Identities=17% Similarity=0.269 Sum_probs=205.0
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-CCccccccCCCceEEEEEe-cCCCeEEEEEcCCCcEEEEE
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWE-CKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd 220 (458)
-..|.+.|..+...--|++||||+.|++|+|+.++.... ........|.++|..++|. |.-+.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 357999999888888899999999999999999987665 3344556788999999995 44789999999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAIT 297 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~ 297 (458)
-++++-.+......|...|++++|.|.+- .|++++.| |.|.+.+.+.. .-........|+-.++
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD-------------G~vsvl~~~~~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD-------------GKVSVLTYDSSGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC-------------CcEEEEEEcCCCCccchhhhhccccccc
Confidence 99887666555556668899999998754 67777777 69999988764 2222222357888899
Q ss_pred EEEEccC---C-----------CEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCC----CEEEEecCCC
Q 012699 298 SLCFNHN---G-----------KILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDE----TSIFSLGSDG 357 (458)
Q Consensus 298 ~~~~~~~---~-----------~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg 357 (458)
+++|.|- | +.|++|+.|..|+||+..+++ ...++.+|.+.|+.++|.|.- .+|++++.||
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 9999985 4 579999999999999988753 345688999999999999943 5799999999
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
++.||..+..... +.. ...+.....+..+.||+.|+.|+++++|+.+.+|.-+..
T Consensus 234 ~viIwt~~~e~e~-wk~-----tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 234 TVIIWTKDEEYEP-WKK-----TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cEEEEEecCccCc-ccc-----cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 9999998743222 211 112235667999999999999999999999999976544
No 117
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=192.04 Aligned_cols=281 Identities=16% Similarity=0.274 Sum_probs=220.7
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-----------ccccccCCCceEEEEEec------CCCeEEEEEcC
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-----------RNATIYCGTEIMSLEWEC------KSDRLLLIGTA 212 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~v~~~~~~~------~~~~~l~~~~~ 212 (458)
...+.|+|||..|++-+.|..+++|++...-... .......+..|...+|-+ |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568999999999999999999999975321110 011122345677777763 56789999999
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCC---ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEee
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFP---SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLP 288 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~ 288 (458)
+.-|++||.-+|+....+..-++.. ...+++|+|||..++++... +|++||+ +.++.-..+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykr--------------cirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKR--------------CIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccc--------------eEEEeeccCCCCCCcchh
Confidence 9999999999999988877665543 45689999999999999876 9999999 5555433332
Q ss_pred cC-----CCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEE
Q 012699 289 LG-----EDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIE 361 (458)
Q Consensus 289 ~~-----~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 361 (458)
.. +..+-+.+++|+| +.+.+++|+...++-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|+. |..|..
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILC 277 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEE
Confidence 22 2356789999999 4568999999999999998889999999999999999999999999999987 788999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccccCCCCCcEEEEEECCCC
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMRTLPHGAAITTVDWHPTL 440 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~~~~h~~~v~~~~~~~~~ 440 (458)
||++..+.+++... ........-.-+...|+|++|++|+.+|.|++||+++ +..+..+..|+..|+.++++|--
T Consensus 278 WDiR~~~~pv~~L~-----rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 278 WDIRYSRDPVYALE-----RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM 352 (406)
T ss_pred Eeehhccchhhhhh-----hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc
Confidence 99998766554322 1112223334466779999999999999999999998 44466666899999999999998
Q ss_pred CeEEEecCC
Q 012699 441 PMFLTGSAD 449 (458)
Q Consensus 441 ~~l~s~~~d 449 (458)
+++|+++..
T Consensus 353 pilatssGq 361 (406)
T KOG2919|consen 353 PILATSSGQ 361 (406)
T ss_pred ceeeeccCc
Confidence 899988754
No 118
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5e-27 Score=207.33 Aligned_cols=243 Identities=19% Similarity=0.318 Sum_probs=204.0
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
+...|+++.|+++|.+|+.|..+|.|.|||..+.+.... ....|...|.+++|. ...+.+|+.++.|..+|++..+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~-~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT-LRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc-ccCCcCceeEEEecc---CceEEEecCCCcEEEEEEecch
Confidence 488999999999999999999999999999987766532 222277899999997 6789999999999999999887
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-C
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-N 304 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 304 (458)
.... ....|...|..+.|++++.++++++.|. .+.|||....++...+ ..|...|.+++|+| .
T Consensus 292 ~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN-------------~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 292 HVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDN-------------VVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQ 355 (484)
T ss_pred hhhh-hhhcccceeeeeEECCCCCeeccCCCcc-------------ceEeccCCCccccEEE--eccceeeeEeeeCCCc
Confidence 6665 2344447899999999999999999994 9999999766666555 48889999999999 5
Q ss_pred CCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCCeeEEeecCCccc
Q 012699 305 GKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 305 ~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
..+||+|+ .|+.|++||..+++.+..+. -...|..|.|++..+.|+++- .++.|.||+..+.+.. .
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---------~ 425 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---------A 425 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---------e
Confidence 67888865 59999999999999888765 367899999999887666543 4778999999875433 2
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
...+|...|..+++||||..+++|+.|.++++|++-..
T Consensus 426 ~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 34478888999999999999999999999999999765
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.5e-27 Score=187.58 Aligned_cols=239 Identities=15% Similarity=0.239 Sum_probs=196.0
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcc
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSN 264 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~ 264 (458)
...|..++.+++.+ +.++++|+.|-+|++||+.....+..+..+. +.++++.|.+... .|++++.|
T Consensus 39 ~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdD------- 106 (362)
T KOG0294|consen 39 FSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDD------- 106 (362)
T ss_pred ccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCC-------
Confidence 34567889999976 8899999999999999999988888777765 7899999999876 88898888
Q ss_pred eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEc
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFG 344 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 344 (458)
|.|.+|+...+..+..++ +|...|+.++.+|.+++.++.+.|+.++.||+-.|+.-..++- ....+.+.|+
T Consensus 107 ------G~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~ 177 (362)
T KOG0294|consen 107 ------GHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWS 177 (362)
T ss_pred ------CcEEEEEcCCeEEeeeec--ccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEc
Confidence 699999999998888876 6777799999999999999999999999999988876655543 2233459999
Q ss_pred CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699 345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~ 424 (458)
|.|.+++.++.+ .|-+|.+.+....... .....+.++.|- ++..|++|..++.|.+||.+.......+
T Consensus 178 ~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i----------~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~ 245 (362)
T KOG0294|consen 178 PQGDHFVVSGRN-KIDIYQLDNASVFREI----------ENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF 245 (362)
T ss_pred CCCCEEEEEecc-EEEEEecccHhHhhhh----------hccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence 999999888776 6889998865322111 111223444433 6678899999999999999998777888
Q ss_pred CCCCCcEEEEEE--CCCCCeEEEecCCCcEEEEeCC
Q 012699 425 LPHGAAITTVDW--HPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 425 ~~h~~~v~~~~~--~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+|...|-++.+ .|++.+|+|+|.||.|+|||++
T Consensus 246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 899999999985 6778899999999999999985
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=190.03 Aligned_cols=305 Identities=17% Similarity=0.165 Sum_probs=210.0
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCcc-ceeEeeccCCCcc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPAL-SRFATNMSGNDSI 95 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~i 95 (458)
+..|+||...|+|++| +.||++|||++.|++|++|+...-.....-......+-+.--.+.|.++ ..++++.-...++
T Consensus 79 ~~~LKgH~~~vt~~~F-sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF-SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEE-cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 5689999999999999 9999999999999999999987533221111011111111123344443 3444445556678
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
+++.+..... |.+-.. .++......-+.|.-.|..+-...++.+|++++.|.+|.+|+
T Consensus 158 ~vyk~~K~~d-----------------G~~~~~-----~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~ 215 (420)
T KOG2096|consen 158 CVYKLVKKTD-----------------GSGSHH-----FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD 215 (420)
T ss_pred EEEEeeeccc-----------------CCCCcc-----cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe
Confidence 8887755332 111111 111111222345777888888888899999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC------ceeeeccCCCCCCceeeeeecCCCC
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK------RVVCDLNTTDAFPSVLDLKCSPVEP 249 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (458)
+. ++.+....+ ....-+..+.+ |+++++++++..-.+++|.+--+ +..+.+....|...|..++|+++..
T Consensus 216 lk-Gq~L~~idt--nq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 216 LK-GQLLQSIDT--NQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred cC-Cceeeeecc--ccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 98 444432222 22334556677 89999999999999999986422 2233444555568999999999999
Q ss_pred eEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEe--ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699 250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVL--PLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 320 (458)
.+++.+.| |.+++||+.- .+.+++. .+.........++++|+|+.|++.. ...+.+|
T Consensus 292 r~vtvSkD-------------G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 292 RAVTVSKD-------------GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred eeEEEecC-------------CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 99999999 6999999752 1222222 1122223445899999999888754 5579999
Q ss_pred eCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 321 DMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 321 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
..++++....+. .|...|.+++|+++|+++++++ |..++++.
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 999887766553 7899999999999999999987 55777765
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=9e-27 Score=187.04 Aligned_cols=263 Identities=17% Similarity=0.242 Sum_probs=203.8
Q ss_pred eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699 77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS 156 (458)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 156 (458)
+.+++....|+++++||+++++++.... .. ..-.|..++.+++|.
T Consensus 19 v~f~~~~~~LLvssWDgslrlYdv~~~~----------------------------------l~-~~~~~~~plL~c~F~ 63 (323)
T KOG1036|consen 19 VKFSPSSSDLLVSSWDGSLRLYDVPANS----------------------------------LK-LKFKHGAPLLDCAFA 63 (323)
T ss_pred EEEcCcCCcEEEEeccCcEEEEeccchh----------------------------------hh-hheecCCceeeeecc
Confidence 5555556778888899999999986632 11 112589999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF 236 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 236 (458)
++ ..+++|+.||.|+.+|+.++... ....|..++.++.+. .....+++|+.|++|++||.+.......+...
T Consensus 64 d~-~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~--- 135 (323)
T KOG1036|consen 64 DE-STIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG--- 135 (323)
T ss_pred CC-ceEEEeccCceEEEEEecCCcce---eeccCCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccC---
Confidence 75 46899999999999999988754 356688899999999 66678999999999999999985555444433
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
..|.++... +..|+.+..++ .+.+||+++........-..-...+.|+++-|++.=+++++-||.
T Consensus 136 kkVy~~~v~--g~~LvVg~~~r-------------~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR 200 (323)
T KOG1036|consen 136 KKVYCMDVS--GNRLVVGTSDR-------------KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR 200 (323)
T ss_pred ceEEEEecc--CCEEEEeecCc-------------eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce
Confidence 367776654 56777777665 999999998765543332334456899999998877899999999
Q ss_pred EEEEeCCCC----ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 317 IHMFDMSAG----LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 317 i~v~d~~~~----~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
|.+=.++.. +....|+.|.. +|++|+|+|-...|+||+.||.|.+||+.+.+... ...
T Consensus 201 VavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~---------q~~ 271 (323)
T KOG1036|consen 201 VAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK---------QLA 271 (323)
T ss_pred EEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhh---------hcc
Confidence 988776654 33445666642 89999999988899999999999999999875443 233
Q ss_pred CCCCceeEEEEccCCCEEEEEeC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
.....|..++|+.+|..||+++.
T Consensus 272 ~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCCeEEEEec
Confidence 34567999999999999999875
No 122
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=210.46 Aligned_cols=268 Identities=16% Similarity=0.271 Sum_probs=216.4
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccccc-CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY-CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
.+|+..-+.++|.|+|++|++|+.||.|++|+........ ..+. ++..|.+++.. ..+|++++.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P--~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP--ETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC--chhhccCceeEEEeec---ccceEEeeccceEEEeeCC
Confidence 3799999999999999999999999999999976653221 1222 67778888754 5689999999999999998
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
+++.-..+.... -++.+++++.+|.+++.|+.|- .|++.++.+......+ .+|..+|.++.|+
T Consensus 85 s~~~~~iL~Rft--lp~r~~~v~g~g~~iaagsdD~-------------~vK~~~~~D~s~~~~l--rgh~apVl~l~~~ 147 (933)
T KOG1274|consen 85 SGEEDTILARFT--LPIRDLAVSGSGKMIAAGSDDT-------------AVKLLNLDDSSQEKVL--RGHDAPVLQLSYD 147 (933)
T ss_pred CCCccceeeeee--ccceEEEEecCCcEEEeecCce-------------eEEEEeccccchheee--cccCCceeeeeEc
Confidence 877543333222 5789999999999999999995 9999999887777766 4788999999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAH--------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
|++.+||+.+-||.|++||+.++.+..++.+- ...+..++|+|++..|+..+.|+.|++|+..+.......+
T Consensus 148 p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 148 PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR 227 (933)
T ss_pred CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence 99999999999999999999998776665421 3466789999998889999999999999998765443221
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 444 (458)
...+...+..++|+|.|+|||+++-+|.|.|||.++... ......|.+++|.|+.+.+-
T Consensus 228 -------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it 286 (933)
T KOG1274|consen 228 -------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAIT 286 (933)
T ss_pred -------ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeE
Confidence 222334489999999999999999999999999998432 22346899999999988443
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.7e-26 Score=175.48 Aligned_cols=261 Identities=23% Similarity=0.286 Sum_probs=198.8
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------CC--C-----CccccccCCCceEEEEEecCCC
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------TP--A-----SRNATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~--~-----~~~~~~~~~~~v~~~~~~~~~~ 204 (458)
+.+..+. .+..|.+++|+|.|.+.+.|+...+++|.....- .. . .......|.+.|+|.+|+ +.+
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws-~~g 101 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS-PCG 101 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-Ccc
Confidence 3455553 5678999999999999999999999998754321 10 0 011233456789999999 889
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
+++++|+.|.+|++.-++...+.. ..
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~--~g---------------------------------------------------- 127 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNA--TG---------------------------------------------------- 127 (350)
T ss_pred CeEEecCCCceEEEEecccccccc--cC----------------------------------------------------
Confidence 999999999999887655433210 00
Q ss_pred EEeecCCCCCcEEEEEEccC----CCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699 285 TVLPLGEDPPAITSLCFNHN----GKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKI 359 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 359 (458)
..+.+..|.+.|..++|-.+ +..|++++ .|..|++-|...++....+.+|.+.|.++- +=++-++++|+.|.+|
T Consensus 128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdkti 206 (350)
T KOG0641|consen 128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTI 206 (350)
T ss_pred cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceE
Confidence 01112345566788887543 45666654 477889999999999999999999998873 3357799999999999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
++||++-...+..... .+....-....|.+++..|.|++|++|-.|....+||++++..+.++.+|...|.++.|+|.
T Consensus 207 rfwdlrv~~~v~~l~~--~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 207 RFWDLRVNSCVNTLDN--DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred EEEeeeccceeeeccC--cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence 9999997654443221 11112223467999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecCCCcEEEEeC
Q 012699 440 LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 440 ~~~l~s~~~dg~v~iw~l 457 (458)
..+|.+|+.|..|++=|+
T Consensus 285 a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ceEEEEecccceEEEeec
Confidence 999999999999999776
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=6.1e-26 Score=201.52 Aligned_cols=287 Identities=14% Similarity=0.151 Sum_probs=206.4
Q ss_pred eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-
Q 012699 84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI- 162 (458)
Q Consensus 84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l- 162 (458)
.++++++.|+.+.+|++.... .+..+.+|.. +.+++|+|+++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~----------------------------------~~~~~~~~~~-~~~l~~~~dg~~l~ 46 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLE----------------------------------VTRTFPVGQR-PRGITLSKDGKLLY 46 (300)
T ss_pred cEEEEecCCCEEEEEECCCCc----------------------------------eEEEEECCCC-CCceEECCCCCEEE
Confidence 467788899999999975422 3334444433 6789999999876
Q ss_pred EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEE-EEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLL-LIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
++++.++.|++||..+++.... ......+..++|+ ++++.+ +++..++.+++||+.+++.+..+... ..+..
T Consensus 47 ~~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~ 119 (300)
T TIGR03866 47 VCASDSDTIQVIDLATGEVIGT---LPSGPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG---VEPEG 119 (300)
T ss_pred EEECCCCeEEEEECCCCcEEEe---ccCCCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC---CCcce
Confidence 5677889999999988765421 2223345678898 455545 45566899999999998877666533 24678
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMF 320 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~ 320 (458)
++++|++..++++..+. ..+.+||.++++........ ..+..++|+|++++|++++ .++.|++|
T Consensus 120 ~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~ 184 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVI 184 (300)
T ss_pred EEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEE
Confidence 99999999998887653 26778899887766554322 2357799999999886554 58999999
Q ss_pred eCCCCceeeeeeCCC-----C--CeEEEEEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699 321 DMSAGLQITGWPAHD-----S--AISSILFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 321 d~~~~~~~~~~~~~~-----~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
|+++++.+..+..+. . ....++|+|++++++. .+.++.+.+||+.+.+..... .....+.++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----------~~~~~~~~~ 254 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----------LVGQRVWQL 254 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----------EeCCCcceE
Confidence 999988776654321 1 2346889999998554 455778999999875443211 122357889
Q ss_pred EEccCCCEEEEEe-CCccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699 393 ALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438 (458)
Q Consensus 393 ~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 438 (458)
+|+|+|++|+++. .++.|.+||+.+.+.+..+. ....++.++++|
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK-VGRLPWGVVVRP 300 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-cccccceeEeCC
Confidence 9999999998875 58999999999986655554 345668888875
No 125
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.5e-27 Score=187.60 Aligned_cols=287 Identities=19% Similarity=0.248 Sum_probs=214.7
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
..|+.|++.|.+||+|+.||.|.|||+.+..... ....|-.+|.+++|+ ++++.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS-~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWS-RDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEec-CCCCEeeeecCCceeEEEeccCCCceeE
Confidence 7899999999999999999999999998876432 345677899999999 8999999999999999999999999888
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC---CCCcEEEEEEccCCC
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE---DPPAITSLCFNHNGK 306 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 306 (458)
+... ++|+...|+|.....+.+..-.. .-.+.++...+. ..+.... ......+..|.+.|+
T Consensus 103 irf~---spv~~~q~hp~k~n~~va~~~~~------------sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~ 166 (405)
T KOG1273|consen 103 IRFD---SPVWGAQWHPRKRNKCVATIMEE------------SPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGK 166 (405)
T ss_pred EEcc---CccceeeeccccCCeEEEEEecC------------CcEEEEecCCce-eeccCCCccccccccccccccCCCC
Confidence 8776 68999999997664443332211 222333332111 1111111 111223446889999
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE---eecCCcccCC
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW---TRNCSRFCDP 382 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~ 382 (458)
++++|...|.+.+||..+.+++..++... ..|..+.++..|+.|+..+.|..|+.|+++.-...-. .....++...
T Consensus 167 yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 167 YIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred EEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 99999999999999999999998887666 7899999999999999999999999999874211100 0000000000
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
-....=.+++||.+|.|+++++.. ..++||....+..+..+.|.+ ....++.|+|-...+++- ..|.|+||..
T Consensus 247 -VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 247 -VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred -HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence 011223568999999999988854 579999999887766666766 578899999999988887 6889999974
No 126
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6e-27 Score=203.92 Aligned_cols=297 Identities=16% Similarity=0.202 Sum_probs=228.2
Q ss_pred eeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 136 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
...+-..++||++.|.|++..|.|.+|++|+.||+|+||.+.++.++. .....+.|.+++|+|....-+++......
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr---~~~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVR---TVQFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEE---EEeecceeEEEEecCCCCceeEEEEecCc
Confidence 335667889999999999999999999999999999999999999875 34456789999999755544444444444
Q ss_pred EEEEEcCCCce---------eeec--------------------------cCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699 216 IKAWNVDAKRV---------VCDL--------------------------NTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260 (458)
Q Consensus 216 i~~wd~~~~~~---------~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 260 (458)
+.+.+..-|.. .... ....+...|..+.|+..|.+|++...+..
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~- 544 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG- 544 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC-
Confidence 55555432210 0000 00112356889999999999998876542
Q ss_pred CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEE
Q 012699 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISS 340 (458)
Q Consensus 261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 340 (458)
...|.|+++...+...-|. ...+.+.++.|+|...+|++++ ...|++||+...+.++.+......|..
T Consensus 545 ---------~~~VliHQLSK~~sQ~PF~--kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 545 ---------NKSVLIHQLSKRKSQSPFR--KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISS 612 (733)
T ss_pred ---------cceEEEEecccccccCchh--hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeee
Confidence 1388899988766655443 3446699999999999999876 457999999988888888777889999
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc----
Q 012699 341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR---- 416 (458)
Q Consensus 341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~---- 416 (458)
++.+|.|.-|+.++.|+.+..+|+.-...+ ......|...+..++|++.-.++++|+.||++.|+.-.
T Consensus 613 msihp~GDnli~gs~d~k~~WfDldlsskP--------yk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D 684 (733)
T KOG0650|consen 613 MSIHPNGDNLILGSYDKKMCWFDLDLSSKP--------YKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND 684 (733)
T ss_pred eeecCCCCeEEEecCCCeeEEEEcccCcch--------hHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh
Confidence 999999999999999999999999854332 23334577889999999999999999999999988532
Q ss_pred --CCC---cccccCCCCCc----EEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 417 --GHA---SGMRTLPHGAA----ITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 417 --~~~---~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.+. ++..+.+|... |.++.|||...+|+++|.||+|++|.
T Consensus 685 l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 685 LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 111 12334477655 99999999999999999999999993
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.7e-25 Score=197.41 Aligned_cols=274 Identities=14% Similarity=0.169 Sum_probs=197.2
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV 239 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v 239 (458)
..+++++.|+.+++||+.+++... .......+..++|+|.+..++++++.++.|++||..+++....+.... .+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTR---TFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP---DP 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEE---EEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC---Cc
Confidence 578899999999999998876543 223344567899994433344677889999999999988876665432 35
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-eEE
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-MIH 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~ 318 (458)
..+.++|+++.++++..+. +.+++||+++.+.+..+... ..+.+++|+|++++++++..++ .+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~------------~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDD------------NLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred cEEEECCCCCEEEEEcCCC------------CeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEE
Confidence 6789999999776654322 59999999987777666422 3367899999999999988765 567
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397 (458)
Q Consensus 319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 397 (458)
+||.++++....+.. .....+++|+|++++|+++ ..++.|++||+.+.+....... ..............++|+|+
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF--EIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee--cccccccccCCccceEECCC
Confidence 889988776655443 3345789999999988654 4699999999997654332110 00000011223456889999
Q ss_pred CCEEEEE-eCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe-cCCCcEEEEeCC
Q 012699 398 GRRLLVT-SGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG-SADHSVQVMSLS 458 (458)
Q Consensus 398 g~~l~~~-~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iw~l~ 458 (458)
+++++++ ..++.+.+||+.+.+... ...+...+.+++|+|++++|+++ +.+|.|++||+.
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLD-YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEE-EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 9987664 456789999998765432 23345679999999999988876 569999999974
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=8.2e-27 Score=196.76 Aligned_cols=301 Identities=14% Similarity=0.162 Sum_probs=223.4
Q ss_pred eeeeeeccCCCCeEEEEeCCCC--CEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 138 DFLETFLGHTSPISCCRFSSSG--NNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
......+-|.++|++++|+|.. +++|+|..-|.|-+||+.+.+... ......|..+|.++.|+|.+...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3455667899999999999954 578999999999999996443322 223445678999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGED 292 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~ 292 (458)
|+|+.-|++.+.....+...........+.++.....++.+..- |...+||+++... ...+ .-|
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~-------------G~f~~iD~R~~~s~~~~~--~lh 321 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNV-------------GNFNVIDLRTDGSEYENL--RLH 321 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecc-------------cceEEEEeecCCccchhh--hhh
Confidence 99999999987655444443333556778888877777777665 5999999998665 3333 345
Q ss_pred CCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc--
Q 012699 293 PPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ-- 365 (458)
Q Consensus 293 ~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-- 365 (458)
...|+.++++|. ..+|++++.|++.+|||++.-. ++.....|...|.+..|||.+-.|++.+.|..|+|||..
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~ 401 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI 401 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc
Confidence 568999999995 4578999999999999998632 233445799999999999987779999999999999985
Q ss_pred -CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEE-EECCCCCe
Q 012699 366 -NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTV-DWHPTLPM 442 (458)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~-~~~~~~~~ 442 (458)
...++..+.... .....--.....+|.|+..++++|..-..|-|+|-.+++.+..+... ...|.++ .|+|-+..
T Consensus 402 sa~~~p~~~I~Hn---~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~ 478 (498)
T KOG4328|consen 402 SAKDEPLGTIPHN---NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDT 478 (498)
T ss_pred cccCCccceeecc---CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccc
Confidence 222221111100 00011123445789999999999999999999999988766655433 3355554 79999984
Q ss_pred EE-EecCCCcEEEEe
Q 012699 443 FL-TGSADHSVQVMS 456 (458)
Q Consensus 443 l~-s~~~dg~v~iw~ 456 (458)
++ .++..|.|+||.
T Consensus 479 ~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 479 LAAGGNSSGKIYVFT 493 (498)
T ss_pred eeccCCccceEEEEe
Confidence 44 455778999985
No 129
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-26 Score=194.17 Aligned_cols=248 Identities=16% Similarity=0.233 Sum_probs=201.6
Q ss_pred cCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 145 GHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
--..+|.+.+|.|+|. .+++++.-..+..||+.+.+........... ..+.....+ +++++|+..+..|.|.+....
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS-hd~~fia~~G~~G~I~lLhak 333 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS-HDSNFIAIAGNNGHIHLLHAK 333 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEec-CCCCeEEEcccCceEEeehhh
Confidence 3457899999999998 8999999999999999887765432222222 345666777 778899999999999999999
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
+++.+.+++.. +.+.++.|+.+++.+++.+.+ |.|.+||++...++..+.-.+. -.-++++.+
T Consensus 334 T~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S 396 (514)
T KOG2055|consen 334 TKELITSFKIE---GVVSDFTFSSDSKELLASGGT-------------GEVYVWNLRQNSCLHRFVDDGS-VHGTSLCIS 396 (514)
T ss_pred hhhhhheeeec---cEEeeEEEecCCcEEEEEcCC-------------ceEEEEecCCcceEEEEeecCc-cceeeeeec
Confidence 99998888776 579999999999998888877 6999999999999888864433 235778888
Q ss_pred cCCCEEEEEecCCeEEEEeCCC------CceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccCCCeeEEee
Q 012699 303 HNGKILAASAVDGMIHMFDMSA------GLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~ 374 (458)
+++.|||+|+..|.|.|||.++ .+++..+..-...|+++.|+|+...|+.+|. +..+++--+.+....
T Consensus 397 ~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF---- 472 (514)
T KOG2055|consen 397 LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF---- 472 (514)
T ss_pred CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee----
Confidence 9999999999999999999653 4677777777789999999999999988876 667888877653211
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
..+......-+.+++++|||.|.+||+|...|++.+|.+.
T Consensus 473 --sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 --SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1333344556779999999999999999999999999874
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=6.3e-27 Score=199.69 Aligned_cols=240 Identities=15% Similarity=0.296 Sum_probs=204.1
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
....|+++...|||+.|++|++-.++.|||+....+.............++++.+ ++.++.++++.||.|.|||+.+..
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQT 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccce
Confidence 3456889999999999999999999999999877654333332233456778888 788999999999999999999999
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
.+..++.+. ..+.++.++++|..+-+++-|. +|+.||+++++.+....+. ..|.++..+|++
T Consensus 543 ~VrqfqGht--DGascIdis~dGtklWTGGlDn-------------tvRcWDlregrqlqqhdF~---SQIfSLg~cP~~ 604 (705)
T KOG0639|consen 543 LVRQFQGHT--DGASCIDISKDGTKLWTGGLDN-------------TVRCWDLREGRQLQQHDFS---SQIFSLGYCPTG 604 (705)
T ss_pred eeecccCCC--CCceeEEecCCCceeecCCCcc-------------ceeehhhhhhhhhhhhhhh---hhheecccCCCc
Confidence 999998887 5789999999999999999994 9999999998888766543 559999999999
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
.++++|-.++.+.|..... .....+.-|+..|.++.|.+.|+++++.+.|+.+..|...-+..+... ..
T Consensus 605 dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----------kE 673 (705)
T KOG0639|consen 605 DWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KE 673 (705)
T ss_pred cceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec----------cc
Confidence 9999999999999988764 445667789999999999999999999999999999999876554433 24
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
...|.++.+|.|.+++++|++|....+|.+
T Consensus 674 ~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 456899999999999999999988888765
No 131
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.5e-26 Score=204.75 Aligned_cols=280 Identities=14% Similarity=0.183 Sum_probs=224.9
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccc---cceeeeeccCCceeeeeCC-ccceeEeeccC
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT---TATHMGSAEMGQTWASSRP-ALSRFATNMSG 91 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 91 (458)
.-+.|.||..-|..+++ . ++.+++++|.|+++++|+....+..+ ...+.+|.+.. +++. .+...+++|+.
T Consensus 6 ls~~l~gH~~DVr~v~~-~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~----i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAV-T-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS----ICYAESDKGRLVVGGM 79 (745)
T ss_pred eEEEeccCccchheeEe-c-CCeEEeecCCCCceeeeeccCcccccceecccCcceeecc----ceeccccCcceEeecc
Confidence 34689999999988887 3 44589999999999999987666553 22355555552 2222 34556899999
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTV 171 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 171 (458)
|..+.+|...... ++..|+||...|.|++...++. ++|||.|.++
T Consensus 80 D~~i~v~~~~~~~----------------------------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~Ta 124 (745)
T KOG0301|consen 80 DTTIIVFKLSQAE----------------------------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTA 124 (745)
T ss_pred cceEEEEecCCCC----------------------------------chhhhhccccceeeeecCCcCc-eEecccccce
Confidence 9999998876544 6678899999999999888887 9999999999
Q ss_pred EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699 172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251 (458)
Q Consensus 172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (458)
++|....... ....|...|+++..-|.+ .+++|+.|.+|++|.- ++.+.++..|. ..|+.+++.+++. +
T Consensus 125 kvW~~~~l~~----~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHt--D~VRgL~vl~~~~-f 193 (745)
T KOG0301|consen 125 KVWRIGELVY----SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHT--DCVRGLAVLDDSH-F 193 (745)
T ss_pred EEecchhhhc----ccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccch--hheeeeEEecCCC-e
Confidence 9997654322 356788999999988443 8999999999999965 77888888866 6899999988754 5
Q ss_pred EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
++++.| |.|++|++ +++.+.++ .+|...+.++...+++..++++++|+++++|+.. ++.+.+
T Consensus 194 lScsND-------------g~Ir~w~~-~ge~l~~~--~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 194 LSCSND-------------GSIRLWDL-DGEVLLEM--HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred EeecCC-------------ceEEEEec-cCceeeee--eccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 566666 69999999 55666655 4888999999988888899999999999999976 777777
Q ss_pred eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
.-....|+++.+-++|+ +++|+.||.|+||....
T Consensus 256 ~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 76677999999998885 67788999999998874
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7e-27 Score=197.70 Aligned_cols=263 Identities=19% Similarity=0.244 Sum_probs=202.6
Q ss_pred EeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699 165 ASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVDAKRVVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 165 ~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 242 (458)
++.| .++.+||+.++.......... ...-.++.. -++.+++++.. -..|.+|.+........... -++++.++
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~-~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v--~Pg~v~al 87 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSY-LAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIV--LPGPVHAL 87 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcc-cccchhhhh--hchhheeeecccCccccccccCchhhhhhhcc--cccceeee
Confidence 3444 459999999987643221110 111111111 13345555544 45789999876554442111 22679999
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM 322 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 322 (458)
+-+|.|.+++.++.. |.|++|.+.+|..+..+ ..|...|+|+.|+.||.+|++|+.||.|.+|++
T Consensus 88 ~s~n~G~~l~ag~i~-------------g~lYlWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTIS-------------GNLYLWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred ecCCCceEEEeeccc-------------CcEEEEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCccEEEEEE
Confidence 999999999988766 59999999999999887 478899999999999999999999999999986
Q ss_pred C---------CCceeeeeeCCCCCeEEEEEcCC--CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 323 S---------AGLQITGWPAHDSAISSILFGPD--ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 323 ~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
. +.+++..+..|.-+|+.+...+. ..+|+|+|.|.++++||+..+..+... ..+..+.+
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti----------~fp~si~a 222 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI----------TFPSSIKA 222 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE----------ecCCccee
Confidence 3 35678899999999999998775 358999999999999999976444322 34556899
Q ss_pred EEEccCCCEEEEEeCCccEEEEEccCCC----------------cccccCCCCC--cEEEEEECCCCCeEEEecCCCcEE
Q 012699 392 MALDVNGRRLLVTSGSVRAPIYQVRGHA----------------SGMRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~----------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
++++|-++.+++|+.+|.|.+.++.... ....+.+|.+ .|+|++.+-||.+|++|+.||.|+
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999999999999999999998876433 1223347888 999999999999999999999999
Q ss_pred EEeC
Q 012699 454 VMSL 457 (458)
Q Consensus 454 iw~l 457 (458)
|||+
T Consensus 303 vWdi 306 (476)
T KOG0646|consen 303 VWDI 306 (476)
T ss_pred EEec
Confidence 9997
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=201.89 Aligned_cols=310 Identities=19% Similarity=0.249 Sum_probs=213.3
Q ss_pred ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC
Q 012699 81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN 160 (458)
Q Consensus 81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 160 (458)
.....|+.+..+|.|.+++....... +..+ .++....|.+.|..+.|-|...
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr--------------~ee~--------------~lk~~~aH~nAifDl~wapge~ 113 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFR--------------LEER--------------QLKKPLAHKNAIFDLKWAPGES 113 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcc--------------hhhh--------------hhcccccccceeEeeccCCCce
Confidence 36778899999999999886553311 1110 2344568999999999999767
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL 240 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~ 240 (458)
.|++++.|.++++||+++.+.......+.|...+.+++|.|.+...|++|+.||.|.|||++-...-. +.... ..++
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~-~e~~~--~~~~ 190 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA-LEEFD--NRIY 190 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh-HHHHh--hhhh
Confidence 89999999999999999988876666788899999999999999999999999999999997554111 11000 0000
Q ss_pred eeee---cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE---EEEccCCCEEEEEec-
Q 012699 241 DLKC---SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS---LCFNHNGKILAASAV- 313 (458)
Q Consensus 241 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~- 313 (458)
...- .|... +. ..++-| ..+...|.+ +.+..|...||+++.
T Consensus 191 ~~~n~~ptpskp-~~------------------kr~~k~-------------kA~s~ti~ssvTvv~fkDe~tlaSaga~ 238 (720)
T KOG0321|consen 191 GRHNTAPTPSKP-LK------------------KRIRKW-------------KAASNTIFSSVTVVLFKDESTLASAGAA 238 (720)
T ss_pred ccccCCCCCCch-hh------------------cccccc-------------ccccCceeeeeEEEEEeccceeeeccCC
Confidence 0000 00000 00 011111 122222333 445567778888877
Q ss_pred CCeEEEEeCCCCceeee--------eeCC---CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 314 DGMIHMFDMSAGLQITG--------WPAH---DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~--------~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
|+.|+|||+++...... +..| .-.+.++.....|.+|++.+.|+.|++|++........ .....
T Consensus 239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~-----~~~sg 313 (720)
T KOG0321|consen 239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPV-----AEFSG 313 (720)
T ss_pred CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCch-----hhccC
Confidence 99999999987543222 2223 22567777777788888888899999999987543211 00111
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-cccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-MRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~ 458 (458)
.........-..+||+.+|++|+.|...++|.+...+.. ..+.+|...|++++|.|..- -++++++|-.++||++.
T Consensus 314 ~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 314 KLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 111222334567999999999999999999999887654 44559999999999988643 57888999999999973
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=208.33 Aligned_cols=280 Identities=14% Similarity=0.260 Sum_probs=213.8
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-----cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-----YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
.....+..+++-..++.++. ..++||.+............ .....+..+.|..-..++|++++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 44566777888777887764 46888877654332111111 1112456778886778999999999999999998
Q ss_pred C---CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 223 A---KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 223 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
. .+.+..+..|. ..+.++.|++... ++++|+.| |.|++||++..+....+. +....|..
T Consensus 119 k~~rnk~l~~f~EH~--Rs~~~ldfh~tep~iliSGSQD-------------g~vK~~DlR~~~S~~t~~--~nSESiRD 181 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHE--RSANKLDFHSTEPNILISGSQD-------------GTVKCWDLRSKKSKSTFR--SNSESIRD 181 (839)
T ss_pred ccccchhhhHhhhhc--cceeeeeeccCCccEEEecCCC-------------ceEEEEeeeccccccccc--ccchhhhc
Confidence 7 44545555554 6899999999876 56677777 699999999988877765 45678999
Q ss_pred EEEcc-CCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 299 LCFNH-NGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 299 ~~~~~-~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
+.|+| .+.+|+++...|.+.+||++. .++...+.+|.++|.|+.|+|++.+||||+.|++|+|||+.+......
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~---- 257 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPK---- 257 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccce----
Confidence 99999 577899999999999999987 456778899999999999999999999999999999999986422110
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEe---CCccEEEEEccCCCcccccC-CCCCcEEEEEECC-CCCeEEEecCCCc
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTS---GSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHP-TLPMFLTGSADHS 451 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~~~dg~ 451 (458)
.......++..+.|-|..++.++.+ .|-.|+|||+...-.+...+ .|...++.++|.. |...|.+++.||+
T Consensus 258 ----~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 258 ----HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ----eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 0112345688999999887655443 36789999998876655444 7999999999966 3448889999998
Q ss_pred EE
Q 012699 452 VQ 453 (458)
Q Consensus 452 v~ 453 (458)
|.
T Consensus 334 v~ 335 (839)
T KOG0269|consen 334 VL 335 (839)
T ss_pred HH
Confidence 74
No 135
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=4.2e-26 Score=200.16 Aligned_cols=144 Identities=16% Similarity=0.213 Sum_probs=113.9
Q ss_pred ecCCeEEEEeCCC-Cceee-eee--CCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699 312 AVDGMIHMFDMSA-GLQIT-GWP--AHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK 386 (458)
Q Consensus 312 ~~dg~i~v~d~~~-~~~~~-~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 386 (458)
+..|.|-||+++. |+.-- .+. .....|+.+.|.| |...|+.+++||.|++|.+..++....... .......|.
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t--Pe~~lt~h~ 677 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT--PEKILTIHG 677 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC--cceeeeccc
Confidence 4457788888765 22211 111 1345799999999 778999999999999999987654332222 112234577
Q ss_pred CceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 387 SCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 387 ~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..|+.+.|+| -...|++++.|.+|++||+.+.....++.+|.+.|.+++|||+|+.+|+.+.||+|++|+.
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 8899999999 4578999999999999999999999999999999999999999999999999999999974
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-25 Score=179.26 Aligned_cols=258 Identities=17% Similarity=0.275 Sum_probs=190.3
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEE
Q 012699 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd 220 (458)
.+|.+-|.++.|.+-|+++|+|+.|++|+|||.+..... .......|.+.|..+.|.+ .-|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 379999999999999999999999999999997544332 2233455788999999964 4689999999999999996
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
-.... ...+. +-| ...-++......|+.+.
T Consensus 90 E~~~~----~~~~~---------------------------------------~~W-------v~~ttl~DsrssV~DV~ 119 (361)
T KOG2445|consen 90 EQEKS----EEAHG---------------------------------------RRW-------VRRTTLVDSRSSVTDVK 119 (361)
T ss_pred ecccc----ccccc---------------------------------------cee-------EEEEEeecCCcceeEEE
Confidence 43111 11110 011 11111234556799999
Q ss_pred EccC--CCEEEEEecCCeEEEEeCCCCce------eeeee-------CCCCCeEEEEEcC---CCCEEEEecCC-----C
Q 012699 301 FNHN--GKILAASAVDGMIHMFDMSAGLQ------ITGWP-------AHDSAISSILFGP---DETSIFSLGSD-----G 357 (458)
Q Consensus 301 ~~~~--~~~l~~~~~dg~i~v~d~~~~~~------~~~~~-------~~~~~v~~~~~~~---~~~~l~~~~~d-----g 357 (458)
|.|. |-.|++++.||.++||+....-. ...++ .+..+..|+.|+| ...+|+.|+.+ +
T Consensus 120 FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~ 199 (361)
T KOG2445|consen 120 FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLN 199 (361)
T ss_pred ecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCcccc
Confidence 9994 77899999999999999754322 22222 4567889999998 34678888776 4
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC----CEEEEEeCCccEEEEEccCCC--------------
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG----RRLLVTSGSVRAPIYQVRGHA-------------- 419 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l~~~~~~~~i~i~~~~~~~-------------- 419 (458)
.++||........ .........+..+|+.++|.|+- .+||+++.|| |+||.+....
T Consensus 200 ~~~Iye~~e~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~ 273 (361)
T KOG2445|consen 200 KVKIYEYNENGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLM 273 (361)
T ss_pred ceEEEEecCCcce-----eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCc
Confidence 7899988765421 22333444788999999999953 6799999999 9999987311
Q ss_pred ------cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 420 ------SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 420 ------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+..+-+|.+.|+.++|+-.|..|++.|.||+||+|.-
T Consensus 274 ~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 274 TDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred cccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 01122269999999999999999999999999999963
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-24 Score=192.30 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=234.8
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
..+-+.--..+|.+|+|+.+.+.||.+-.||.|.+|++...-.............|.+++|. ++..|++.+.+|.|.-
T Consensus 17 rcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 17 RCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITE 94 (691)
T ss_pred EEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEE
Confidence 33444556788999999999999999999999999999876554443444455789999998 4667889999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||+.+++....+.... +.+++++.+|.+..++.++.+ |.+..++...++......+....+.+.+
T Consensus 95 wDl~~lk~~~~~d~~g--g~IWsiai~p~~~~l~Igcdd-------------Gvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNG--GAIWSIAINPENTILAIGCDD-------------GVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred EecccCceeEEecCCC--cceeEEEeCCccceEEeecCC-------------ceEEEEecCCceEEEEeecccccceEEE
Confidence 9999999988887766 789999999999999999877 6888888888777776666667789999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-------C-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-------A-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
++|+|++..++.|+.||.|++||..++..+.... . ...-|+++.|-.++ .|++|..-|+|.+||...+...
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 9999999999999999999999999887766221 1 23357777777565 8999999999999999865322
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc----cccCCCCCcEEEEEECCCCCeEEEe
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG----MRTLPHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~l~s~ 446 (458)
....-+...|.+++..+++.++++++-|+.+..|...+.... .....|...|.+++..++ .|++|
T Consensus 239 ---------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sg 307 (691)
T KOG2048|consen 239 ---------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISG 307 (691)
T ss_pred ---------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEec
Confidence 223357788999999999999999999999999988776542 223368899999999887 89999
Q ss_pred cCCCcEEE
Q 012699 447 SADHSVQV 454 (458)
Q Consensus 447 ~~dg~v~i 454 (458)
|.|..+.+
T Consensus 308 G~d~~l~i 315 (691)
T KOG2048|consen 308 GRDFTLAI 315 (691)
T ss_pred ceeeEEEE
Confidence 99998876
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-26 Score=179.11 Aligned_cols=244 Identities=14% Similarity=0.236 Sum_probs=195.8
Q ss_pred CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcc
Q 012699 190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSN 264 (458)
Q Consensus 190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~ 264 (458)
|...|..+... --+.+|++++.|++|+|+.++.+.. +.++..+. +++..++|.. .|.+|++++.|
T Consensus 10 H~D~IHda~lD-yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYD------- 79 (299)
T KOG1332|consen 10 HEDMIHDAQLD-YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYD------- 79 (299)
T ss_pred hhhhhhHhhhh-hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecC-------
Confidence 44445544444 4588999999999999999987653 44555544 8999999987 78999999999
Q ss_pred eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCCeE
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAG---LQITGWPAHDSAIS 339 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~ 339 (458)
|.|.||.-.+++-.+......|...|++++|.|. |-.|++++.||.|.|.+.+.. ...+....|.-.|+
T Consensus 80 ------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvn 153 (299)
T KOG1332|consen 80 ------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVN 153 (299)
T ss_pred ------ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccc
Confidence 5999999999877777777789999999999995 678999999999999998764 22334568999999
Q ss_pred EEEEcCC---C-----------CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC----CEE
Q 012699 340 SILFGPD---E-----------TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG----RRL 401 (458)
Q Consensus 340 ~~~~~~~---~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g----~~l 401 (458)
+++|.|- | +.|++|+.|..|+||+..+.. +. .......|...|..++|.|.- .+|
T Consensus 154 sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---w~----~e~~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 154 SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---WK----LERTLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc---hh----hhhhhhhcchhhhhhhhccccCCCceee
Confidence 9999984 4 569999999999999998751 11 112256799999999999964 579
Q ss_pred EEEeCCccEEEEEccCCCcccc---cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 402 LVTSGSVRAPIYQVRGHASGMR---TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 402 ~~~~~~~~i~i~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
|+++.||++.||..+......+ +......+..++||+.|+.|+.++.|..|.+|.
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999999999998874322221 224567899999999999999999999999996
No 139
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.3e-26 Score=190.78 Aligned_cols=212 Identities=15% Similarity=0.292 Sum_probs=169.3
Q ss_pred eeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 141 ETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
..|.||.+.=+.++|++.. -.|++++.|++|++||+..... ..+.....|...|..++|++.+..++.+++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 4577899888889999953 4689999999999999976543 122334457788999999999999999999999
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
.+.|||++++..........+...+.+++|+|-+. .||+++.| ++|.+||+++... +...+.+|.
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D-------------~tV~LwDlRnL~~-~lh~~e~H~ 316 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD-------------KTVALWDLRNLNK-PLHTFEGHE 316 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC-------------CcEEEeechhccc-CceeccCCC
Confidence 99999999542222233334448899999999765 56667767 5999999998665 444567899
Q ss_pred CcEEEEEEccC-CCEEEEEecCCeEEEEeCCC-C-------------ceeeeeeCCCCCeEEEEEcCCCCE-EEEecCCC
Q 012699 294 PAITSLCFNHN-GKILAASAVDGMIHMFDMSA-G-------------LQITGWPAHDSAISSILFGPDETS-IFSLGSDG 357 (458)
Q Consensus 294 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~-~-------------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg 357 (458)
..|.++.|+|. ...|++++.|+.+.|||+.. + +++....+|...|..+.|+|+..+ +++.+.|+
T Consensus 317 dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred cceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 99999999995 56889999999999999864 1 235666799999999999997764 67888999
Q ss_pred eEEEEeccC
Q 012699 358 KIIEWSLQN 366 (458)
Q Consensus 358 ~i~iwd~~~ 366 (458)
.+.||.+..
T Consensus 397 ~LqIW~~s~ 405 (422)
T KOG0264|consen 397 ILQIWQMAE 405 (422)
T ss_pred eEEEeeccc
Confidence 999999874
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.4e-26 Score=197.56 Aligned_cols=319 Identities=14% Similarity=0.183 Sum_probs=228.1
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSG 91 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (458)
..++||...|.|+.. .+.|.+||+|+.||+++||.+.+++++ +.|..++|.|.+..-. ||++-.
T Consensus 394 lvyrGHtg~Vr~iSv-dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~v---------LAvA~~ 463 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISV-DPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCV---------LAVAVG 463 (733)
T ss_pred eeEeccCCeEEEEEe-cCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCcee---------EEEEec
Confidence 467899999999999 999999999999999999999999877 6677888888754322 222211
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEE----eC
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASA----SV 167 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~ 167 (458)
.. +-+-+-.+.+ . +.--+....|+++ ..
T Consensus 464 ~~-~~ivnp~~G~--------------------~---------------------------~e~~~t~ell~~~~~~~~p 495 (733)
T KOG0650|consen 464 EC-VLIVNPIFGD--------------------R---------------------------LEVGPTKELLASAPNESEP 495 (733)
T ss_pred Cc-eEEeCccccc--------------------h---------------------------hhhcchhhhhhcCCCccCC
Confidence 11 1111111100 0 0000001111111 23
Q ss_pred CCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699 168 DGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 242 (458)
|+.+..|.-....... ....+.+..+|..+.|+ ..|.+|++...+ ..|.|+++........+.... +.+.++
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v 572 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRV 572 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEecccccccCchhhcC--CceeEE
Confidence 4566777644222211 22456688899999999 889999997664 478899988776655554443 679999
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDM 322 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 322 (458)
.|+|...+++.++.. .|++||+.....++.+. .....|..++++|.|.-|++|+.|+.+..||+
T Consensus 573 ~FHPs~p~lfVaTq~--------------~vRiYdL~kqelvKkL~--tg~kwiS~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 573 KFHPSKPYLFVATQR--------------SVRIYDLSKQELVKKLL--TGSKWISSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred EecCCCceEEEEecc--------------ceEEEehhHHHHHHHHh--cCCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence 999999999999886 99999999877766653 34467999999999999999999999999999
Q ss_pred CC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC----CCceeEEEEccC
Q 012699 323 SA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS----KSCRHEMALDVN 397 (458)
Q Consensus 323 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~ 397 (458)
.- .++.++++-|...+++++|++.-.+|++|+.||++.|+--.-...++.......+....+| ...|....|+|.
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 75 4678889999999999999999999999999999998854321111100001111112223 345888999999
Q ss_pred CCEEEEEeCCccEEEE
Q 012699 398 GRRLLVTSGSVRAPIY 413 (458)
Q Consensus 398 g~~l~~~~~~~~i~i~ 413 (458)
..+|++++.||+|++|
T Consensus 717 qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 717 QPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEEecCCCceEEee
Confidence 9999999999999998
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=200.21 Aligned_cols=292 Identities=16% Similarity=0.245 Sum_probs=213.0
Q ss_pred eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeee----eCCccceeEeeccCCCccccccccc
Q 012699 27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWAS----SRPALSRFATNMSGNDSISPSKLEF 102 (458)
Q Consensus 27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~i~~~~~~~ 102 (458)
.++|+. .++-..++.++ -..++|+..+.........+..-..+...+.. -+.-...+||+++..|.|.+||+..
T Consensus 42 ~nAIs~-nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISV-NRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEee-cCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 455666 55555555444 24566666655544322222211111111111 1123678999999999999999976
Q ss_pred ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCC
Q 012699 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTP 181 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 181 (458)
.. +-+.+..|..|+..|+++.|++. ..+|++|+.||+|++||++....
T Consensus 120 ~~-------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 120 SI-------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred cc-------------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 21 01144567899999999999984 56799999999999999987765
Q ss_pred CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCCCeEEEeecccCC
Q 012699 182 ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY 260 (458)
Q Consensus 182 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 260 (458)
.. ........|..+.|+|..+..++++...|.+.+||++... +...+..| .++|.++.|+|++.+|++|+.|+
T Consensus 169 ~~--t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGGRDK-- 242 (839)
T KOG0269|consen 169 KS--TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGGRDK-- 242 (839)
T ss_pred cc--cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecCCCc--
Confidence 43 3334567899999999999999999999999999998644 44444444 48999999999999999999884
Q ss_pred CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE-EEEEec--CCeEEEEeCCCC-ceeeeeeCCCC
Q 012699 261 GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI-LAASAV--DGMIHMFDMSAG-LQITGWPAHDS 336 (458)
Q Consensus 261 ~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~--dg~i~v~d~~~~-~~~~~~~~~~~ 336 (458)
.|+|||+.+.+........ ...++.++.|-|...+ |++++. |-.|+|||++.. -+..++..|..
T Consensus 243 -----------~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 243 -----------MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred -----------cEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 9999999977766555443 3367999999997654 555443 778999999753 55778899999
Q ss_pred CeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCe
Q 012699 337 AISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 337 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
.++.++|.. |...|.+++.||++..-.+++...
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 999999965 456788999999987777765433
No 142
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.2e-24 Score=195.36 Aligned_cols=249 Identities=14% Similarity=0.262 Sum_probs=197.8
Q ss_pred cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 189 YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 189 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
.|....+.++|. +++..|++++.||.|++|+.... +...++.... ..+.+++.. ...|++++.+
T Consensus 11 aht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~--s~~f~~~s~~---------- 75 (933)
T KOG1274|consen 11 AHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACY--SNHFLTGSEQ---------- 75 (933)
T ss_pred hccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeec--ccceEEeecc----------
Confidence 456668899999 77789999999999999998766 3333333222 345555544 4478888777
Q ss_pred ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699 268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE 347 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (458)
++|.+|...+++.-..+. ...-++++++++.+|++++.|+.|-.|++.++.+......+++|.++|.++.|+|.+
T Consensus 76 ---~tv~~y~fps~~~~~iL~--Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 76 ---NTVLRYKFPSGEEDTILA--RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred ---ceEEEeeCCCCCccceee--eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 599999998877654432 223458999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-
Q 012699 348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP- 426 (458)
Q Consensus 348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~- 426 (458)
++||+.+-||.|++||+.++............ ........+..++|+|+|..+++...++.|.+|+..+......+..
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~-n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD-NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCcc-ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 99999999999999999976543322211111 1111245677899999999999999999999999999877666663
Q ss_pred -CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 427 -HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 427 -h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+...+..++|+|.|++||+++.||.|.|||.+
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 44559999999999999999999999999974
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.2e-24 Score=171.63 Aligned_cols=273 Identities=13% Similarity=0.256 Sum_probs=194.3
Q ss_pred cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccc
Q 012699 21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKL 100 (458)
Q Consensus 21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 100 (458)
.+|.+-|+|+.| ...|+.+|+|+.|++++|||.... + +.+ .
T Consensus 10 s~h~DlihdVs~-D~~GRRmAtCSsDq~vkI~d~~~~-------------s-----------~~W-------------~- 50 (361)
T KOG2445|consen 10 SGHKDLIHDVSF-DFYGRRMATCSSDQTVKIWDSTSD-------------S-----------GTW-------------S- 50 (361)
T ss_pred cCCcceeeeeee-cccCceeeeccCCCcEEEEeccCC-------------C-----------Cce-------------E-
Confidence 468999999999 999999999999999999986433 0 111 1
Q ss_pred ccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEecCC
Q 012699 101 EFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS--SGNNIASASVDGTVRIWTYDS 178 (458)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~~~ 178 (458)
+....+.|.+.|..+.|.+ =|+.+|+++.|++++||.-..
T Consensus 51 --------------------------------------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 51 --------------------------------------CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred --------------------------------------EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 3335678999999999965 389999999999999997521
Q ss_pred CC-------CCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699 179 ST-------PASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 179 ~~-------~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
.. -............|+.+.|.|. -+-.|++++.||.+|||+....-
T Consensus 93 ~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~------------------------- 147 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM------------------------- 147 (361)
T ss_pred cccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc-------------------------
Confidence 11 1112233445678999999974 46688999999999999865332
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---CCEEEEEecC-----CeEEEEeC
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---GKILAASAVD-----GMIHMFDM 322 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~v~d~ 322 (458)
.+.-|.+...-.....+...+..+..|+.|+|. ..+|++|+.+ +.++||..
T Consensus 148 ---------------------nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 148 ---------------------NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred ---------------------ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 222232221000001112234456788899873 4688888766 47888876
Q ss_pred CCC----ceeeeeeCCCCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCCCeeE-----------EeecCCcccCCC
Q 012699 323 SAG----LQITGWPAHDSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQGQVL-----------WTRNCSRFCDPE 383 (458)
Q Consensus 323 ~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~-----------~~~~~~~~~~~~ 383 (458)
... ..+..+.+|+.+|+.++|.|+ -..||+++.|| |+||.+......+ .......+....
T Consensus 207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~ 285 (361)
T KOG2445|consen 207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD 285 (361)
T ss_pred cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence 542 346677899999999999994 34699999999 9999998422111 111122333456
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
.|...|..+.|+-.|..|++.+.||.|++|...-
T Consensus 286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 7889999999999999999999999999998653
No 144
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=7.9e-25 Score=186.73 Aligned_cols=264 Identities=18% Similarity=0.260 Sum_probs=203.4
Q ss_pred eEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 150 ISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 150 v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
+.++.|+....+ +++.+.|..+++|.-....+.........+..-.|++.. ....++++|+..+.|+|||++...+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~-s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA-SQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh-hcceeeeccCcCceeeehhhHHHHHhh
Confidence 889999876542 344467888999975443221111111122233344433 344789999999999999999777777
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-E
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-I 307 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 307 (458)
.++.|. ..|+++.++-...++++++.. |.|.+..+.++.....+... ....+.-+.|+|..+ +
T Consensus 116 ~lkdh~--stvt~v~YN~~DeyiAsvs~g-------------Gdiiih~~~t~~~tt~f~~~-sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 116 FLKDHQ--STVTYVDYNNTDEYIASVSDG-------------GDIIIHGTKTKQKTTTFTID-SGQSVRLLRYSPSKRFL 179 (673)
T ss_pred hccCCc--ceeEEEEecCCcceeEEeccC-------------CcEEEEecccCccccceecC-CCCeEEEeeccccccee
Confidence 777666 789999999999999999877 69999999998888888643 335678899999765 4
Q ss_pred EEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
|.+++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||.+...... ....
T Consensus 180 L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~y 249 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLTY 249 (673)
T ss_pred eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eeee
Confidence 567889999999999887776654 58999999999999 55678899999999999998653322 1234
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCC
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTL 440 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 440 (458)
..+...++|+++|.+|++|+..|.|..||++..+.+.... .|...|++++|-|.-
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 4567889999999999999999999999999887665555 899999999998764
No 145
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.9e-24 Score=179.72 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=206.3
Q ss_pred CEEEEEe-CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc
Q 012699 160 NNIASAS-VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238 (458)
Q Consensus 160 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 238 (458)
.+++++. .-..+.+|.+....... .....++++.+++-+ +.+.+++.|+..|.|++|.+.+|..+..+..| +..
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~--q~~v~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ 125 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV--QYIVLPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQS 125 (476)
T ss_pred hheeeecccCccccccccCchhhhh--hhcccccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhh--ccc
Confidence 4666654 34478899886554332 234457889999988 78899999889999999999999999888554 478
Q ss_pred eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCCcEEEEEEccC--CCEEE
Q 012699 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPPAITSLCFNHN--GKILA 309 (458)
Q Consensus 239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~ 309 (458)
|+++.|+.|+.++++++.| |.|.+|++.+ ........+..|.-+|+.+...+. ..+++
T Consensus 126 ITcL~fs~dgs~iiTgskD-------------g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 126 ITCLKFSDDGSHIITGSKD-------------GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred eeEEEEeCCCcEEEecCCC-------------ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEE
Confidence 9999999999999999999 6999997632 233334445688889999988875 46899
Q ss_pred EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE-------eecCCcccCC
Q 012699 310 ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW-------TRNCSRFCDP 382 (458)
Q Consensus 310 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~ 382 (458)
+++.|.++++||+..+..+.++. ...++.+++.+|-++.++.|+.+|.|.+.++.+...... ..........
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred EecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 99999999999999999888875 467899999999999999999999999998875431100 0111122333
Q ss_pred CCCCC--ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699 383 ESSKS--CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 383 ~~~~~--~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
.+|.. .|++++++-||.+|++|+.||.++|||+.+.+.+..+..-.++|+.+.+.|-.+
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 45555 999999999999999999999999999998866655555678999999866544
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.5e-23 Score=167.48 Aligned_cols=219 Identities=16% Similarity=0.268 Sum_probs=172.6
Q ss_pred ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc----------eeeec---cCCCCCCceeeeeecCCCC-eEEE
Q 012699 188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR----------VVCDL---NTTDAFPSVLDLKCSPVEP-IFVS 253 (458)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------~~~~~---~~~~~~~~v~~~~~~~~~~-~~~~ 253 (458)
..|++.|+++...+..++++++|+.||.|.+||++.-. ..+.+ ....|.-.|.++.|-|-.. ++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35678899999998899999999999999999997643 11111 1122334688899998665 5556
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCCceeee
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAGLQITG 330 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~~~~ 330 (458)
++.|. ++++||..+.+....|++++ .|.+-+++|- ..++|+|..+-.|++.|+.+|..-..
T Consensus 120 sSFDh-------------tlKVWDtnTlQ~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 120 SSFDH-------------TLKVWDTNTLQEAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT 183 (397)
T ss_pred ccccc-------------eEEEeecccceeeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence 66664 99999999999888887654 4888888883 45788899999999999999999999
Q ss_pred eeCCCCCeEEEEEcCCCCE-EEEecCCCeEEEEeccCCCeeEEeecC------CcccCCCCCCCceeEEEEccCCCEEEE
Q 012699 331 WPAHDSAISSILFGPDETS-IFSLGSDGKIIEWSLQNQGQVLWTRNC------SRFCDPESSKSCRHEMALDVNGRRLLV 403 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~~g~~l~~ 403 (458)
+.+|.+.|.++.|+|...+ |++|+.||.|++||++...-....... +.......|.+.+..++|+.+|.++++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 9999999999999997765 779999999999999975332222111 122234567889999999999999999
Q ss_pred EeCCccEEEEEccCCCccc
Q 012699 404 TSGSVRAPIYQVRGHASGM 422 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~~~~~ 422 (458)
.+.|.++++|+...+....
T Consensus 264 ~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ccCccceEEeecccCcccc
Confidence 9999999999998765443
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=5.9e-26 Score=201.98 Aligned_cols=242 Identities=19% Similarity=0.392 Sum_probs=209.2
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. ....|..+|.++.|+ ....+|++|..+|+|+
T Consensus 19 ~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~--S~~~hespIeSl~f~-~~E~LlaagsasgtiK 95 (825)
T KOG0267|consen 19 WDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT--SLTGHESPIESLTFD-TSERLLAAGSASGTIK 95 (825)
T ss_pred ccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh--eeeccCCcceeeecC-cchhhhcccccCCcee
Confidence 3445666899999999987788899999999999999886555432 356788999999999 7888999999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+||++..+.++++..+. ..+..+.|+|-+.+++.++.+ +.+++||.+...+...+. +|...+.
T Consensus 96 ~wDleeAk~vrtLtgh~--~~~~sv~f~P~~~~~a~gStd-------------td~~iwD~Rk~Gc~~~~~--s~~~vv~ 158 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHL--LNITSVDFHPYGEFFASGSTD-------------TDLKIWDIRKKGCSHTYK--SHTRVVD 158 (825)
T ss_pred eeehhhhhhhhhhhccc--cCcceeeeccceEEecccccc-------------ccceehhhhccCceeeec--CCcceeE
Confidence 99999999888877765 678999999999999988888 499999999888888775 5888999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
.+.|+|+|++++.|++|..+++||+..|+....|+.|++.+..+.|+|..-++++|+.|+++++||+++.....
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~------ 232 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS------ 232 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999653322
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 408 (458)
........|.+.+|+|+++.+++|....
T Consensus 233 ---s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 233 ---SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ---ccCCccCCceeeeecCCceeeecCchhh
Confidence 1223466799999999999998876653
No 148
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.3e-24 Score=174.48 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=167.0
Q ss_pred ccCCCCeEEEEeCCCC--CEEEEEeCCCcEEEEecCCCC--------------CCCccccccCCCceEEEEEecCCCeEE
Q 012699 144 LGHTSPISCCRFSSSG--NNIASASVDGTVRIWTYDSST--------------PASRNATIYCGTEIMSLEWECKSDRLL 207 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~--~~l~s~~~dg~v~iwd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~l 207 (458)
-.|.+.++.+..++-+ .+.++-+..|.|+||++...- .........|...-+.++|+|.....|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3688888888877754 456666889999999975321 011122334566788999998777779
Q ss_pred EEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 208 LIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 208 ~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
++|.--+.|++|...++..... .....|...|.+++|+|... .|++++.| |+|+|||++.+....
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D-------------gsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD-------------GSIRIWDIRSGPKKA 294 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC-------------ceEEEEEecCCCccc
Confidence 9998889999999988764322 22233557899999999876 77788888 699999999986655
Q ss_pred EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEE
Q 012699 286 VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIE 361 (458)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 361 (458)
.+....|...|+.+.|+.+..+|++|+.||+++|||+++ ++++..++-|..+|++|.|+|. ...|++++.|..|.+
T Consensus 295 ~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 295 AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 555578999999999999888999999999999999986 6789999999999999999994 457888899999999
Q ss_pred EeccC
Q 012699 362 WSLQN 366 (458)
Q Consensus 362 wd~~~ 366 (458)
||+.-
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99974
No 149
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.7e-25 Score=204.68 Aligned_cols=296 Identities=20% Similarity=0.302 Sum_probs=234.1
Q ss_pred ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC-------cccceeeeccCCCCcCCCc----ceec
Q 012699 61 TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG-------AGDIIQMFNDGLYTENGRD----AQGE 129 (458)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~----~~~~ 129 (458)
.+...++|+|.+..+...+...+.+=.+.+.+.++.+|.+++.... .......+++.+|.+.|.. ++.+
T Consensus 7 ~Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 7 SRTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred cccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence 3445678888876555566556666667788889999988776533 1233345678888888887 7888
Q ss_pred cCCCeeee------------eeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE
Q 012699 130 EDFPEVKV------------DFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS 196 (458)
Q Consensus 130 ~~~~~~~~------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~ 196 (458)
.+++.+.+ ..+.++..|++.|..+.|++.+. .||+|+.||.|.|||+...+.............|.+
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ 166 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKC 166 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceE
Confidence 88888777 34566788999999999999654 999999999999999987554433333335678999
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEE
Q 012699 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTV 275 (458)
Q Consensus 197 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i 275 (458)
++|+......|++++.+|...|||++..+.+..+..+.....+..+.|+|+.. .+++++.|... -.|.+
T Consensus 167 lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~----------Pviql 236 (1049)
T KOG0307|consen 167 LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSA----------PVIQL 236 (1049)
T ss_pred eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCC----------ceeEe
Confidence 99997778899999999999999999998887777665545688999999876 45555554322 48999
Q ss_pred EECCCCc-eeEEeecCCCCCcEEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEE
Q 012699 276 WNMKTWK-AMTVLPLGEDPPAITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFS 352 (458)
Q Consensus 276 ~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 352 (458)
||++... +.+++ ..|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+....+.+..+.|.|... .++.
T Consensus 237 WDlR~assP~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~ 314 (1049)
T KOG0307|consen 237 WDLRFASSPLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAA 314 (1049)
T ss_pred ecccccCCchhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhh
Confidence 9998633 44444 5788999999999966 8899999999999999999999999998889999999999655 7888
Q ss_pred ecCCCeEEEEeccCCC
Q 012699 353 LGSDGKIIEWSLQNQG 368 (458)
Q Consensus 353 ~~~dg~i~iwd~~~~~ 368 (458)
++-||.|.||.+....
T Consensus 315 asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 315 ASFDGKISIYSLQGTD 330 (1049)
T ss_pred heeccceeeeeeecCC
Confidence 8889999999998654
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.7e-23 Score=166.21 Aligned_cols=249 Identities=13% Similarity=0.187 Sum_probs=181.5
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.+.+|..+|++++||+||+.|+|+|.|..|.+||+..+.+.. .+...++|+.+.|+|.+.+.+++.-.+..-.+-++
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~---rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~ 136 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK---RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDF 136 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee---EEEccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence 466899999999999999999999999999999999988654 45567899999999888888777777666666666
Q ss_pred CCCceeeeccCCCC---CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 222 DAKRVVCDLNTTDA---FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 222 ~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
..++... +..... .....+..|.+.|+++++|... |.+.++|..+.+++..++... ...|..
T Consensus 137 s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsK-------------Gkllv~~a~t~e~vas~rits-~~~IK~ 201 (405)
T KOG1273|consen 137 SDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSK-------------GKLLVYDAETLECVASFRITS-VQAIKQ 201 (405)
T ss_pred cCCceee-ccCCCccccccccccccccCCCCEEEEecCc-------------ceEEEEecchheeeeeeeech-heeeeE
Confidence 6533221 111110 1112234577777777777665 799999999999988887544 356899
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCC-------Cce--eeeee--CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSA-------GLQ--ITGWP--AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN 366 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 366 (458)
+.++..|+.|+.-+.|..|+.|+++. +++ .+.++ .....-.+++|+.+|.|++.++. -..++||.-..
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 99999999999999999999999863 111 12221 11224467889999999887775 45699999887
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
+..+..... ........+.|+|-...+++. ..|.+++|....
T Consensus 282 GsLVKILhG--------~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 282 GSLVKILHG--------TKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cceeeeecC--------Cchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 644432211 112345678899988888776 778999998753
No 151
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=174.39 Aligned_cols=300 Identities=13% Similarity=0.191 Sum_probs=226.1
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC------CCCCccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS------TPASRNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
+.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++.. +++. .....|...|.+++|. .....+++|..
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~-~~N~~~~SG~~ 125 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFD-LENRFLYSGER 125 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEc-cCCeeEecCCC
Confidence 44567799999999999999999999999999999998532 2221 1222344789999999 77889999999
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGE 291 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~ 291 (458)
+++|..-|+++.+.+..+......+.|+.+..+|..+.+++.+.+ +.|.+||.+... +...+-...
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~-------------~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA-------------KLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC-------------ceEEEEeccCCCCCCceeeecC
Confidence 999999999999998888777777899999999999999998888 599999998755 333333344
Q ss_pred CCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-eeee------eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 292 DPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL-QITG------WPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 292 ~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~-~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
.......+.|+|. ..+|++.+..+-+-+||.+..+ ++.. ++.....-.++.|+|+|..|++.-....-.+||
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 5566888999995 5678888888999999998643 2222 121122346789999999999887777778889
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC-----------------------c
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA-----------------------S 420 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~-----------------------~ 420 (458)
+-....+........ ..--....+.+++|-.|-. +++|+.+-.|++|.+.... .
T Consensus 273 ~~S~R~~V~k~D~N~--~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNP--NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eecccceeEeccCCC--Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 887544433222100 0001123456677765544 8899999999999885211 1
Q ss_pred ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+.+|..-++.+.|+|...+|++.|-...++||.
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 123348999999999999999999999999999996
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=9.1e-21 Score=177.67 Aligned_cols=371 Identities=20% Similarity=0.368 Sum_probs=272.2
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEecccccc-ccccceeeeeccCCceeeeeCCccce-eEeec-cCCCcc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA-CATTATHMGSAEMGQTWASSRPALSR-FATNM-SGNDSI 95 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~~i 95 (458)
.+..|...|.++.+ .+++..++.++.|+.+.+|+..... ....+..... ..-..+... ..+.. ++... ..++.+
T Consensus 60 ~~~~~~~~i~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAF-SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEE-CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccE
Confidence 56789999999999 9999999999999999999998885 2211111110 011122222 33333 44443 448888
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeC-CCcEEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASV-DGTVRIW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw 174 (458)
.+|++.. .......+..|...|..++|+|+++.+++++. |+.+++|
T Consensus 137 ~~~~~~~---------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (466)
T COG2319 137 KLWDLST---------------------------------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLW 183 (466)
T ss_pred EEEEecC---------------------------------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEE
Confidence 8888754 01155677899999999999999998888885 9999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCceee-eccCCCCCCceeeeeecCCCCeEE
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKRVVC-DLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
++....... ....+...+.+++|+ +++. .+++++.|+.+++||...+.... .+..+.. .. ...|+|++..++
T Consensus 184 ~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~ 257 (466)
T COG2319 184 DLRTGKPLS--TLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLA 257 (466)
T ss_pred EcCCCceEE--eeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEE
Confidence 998744432 223367889999999 5555 55555999999999988777776 4555543 22 228999998888
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
+++.+ +.+++|+...... ...+ ..|...+.++.|+|++..+++++.|+.+.+||..+.......
T Consensus 258 ~~~~d-------------~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 258 SGSSD-------------GTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred EecCC-------------CcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 77777 5999999987665 3333 456788999999998888888999999999999887766666
Q ss_pred e--CCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCC
Q 012699 332 P--AHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGS 407 (458)
Q Consensus 332 ~--~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~ 407 (458)
. .|...+..+.|.+++..++.+ ..|+.+.+|++.... ..... .....+..+.+++ ...+.. +..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~~ 391 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-PLKTL---------EGHSNVLSVSFSP-DGRVVSSGSTD 391 (466)
T ss_pred eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-eeEEe---------cCCceEEEEEECC-CCCEEEEecCC
Confidence 5 788889999994343456655 678999999998765 11111 0111178888988 533433 5778
Q ss_pred ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 408 VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 408 ~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+.+.+|+............+...+....+++++..+++++.++.+++|++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (466)
T COG2319 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441 (466)
T ss_pred CceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEec
Confidence 99999999887655554444378999999999999999999999999986
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4e-25 Score=196.78 Aligned_cols=255 Identities=16% Similarity=0.287 Sum_probs=212.6
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV 239 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v 239 (458)
.+++....+-.+++||.... ..|...+.++..- ...+.+++|+.|..+.+|.+.....+..+..+. .+|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~~--------~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he--spI 73 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTREF--------VAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE--SPI 73 (825)
T ss_pred cccceeeeeeccccccchhh--------hhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccC--Ccc
Confidence 34445555566778876432 2344556666653 677889999999999999987766666655555 899
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 319 (458)
.++.|++...+++++..+ |.|++||++..+.+..+ .+|...+.++.|+|-+.+++.|+.|+.+.+
T Consensus 74 eSl~f~~~E~Llaagsas-------------gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~~a~gStdtd~~i 138 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSAS-------------GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEFFASGSTDTDLKI 138 (825)
T ss_pred eeeecCcchhhhcccccC-------------Cceeeeehhhhhhhhhh--hccccCcceeeeccceEEecccccccccee
Confidence 999999999999999988 59999999998888765 478888999999999999999999999999
Q ss_pred EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
||.+..-+.+.+.+|...+..+.|+|+|++++.+++|..+++||+..++.. .....|...+..+.|+|..-
T Consensus 139 wD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---------~ef~~~e~~v~sle~hp~e~ 209 (825)
T KOG0267|consen 139 WDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---------KEFKSHEGKVQSLEFHPLEV 209 (825)
T ss_pred hhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc---------cccccccccccccccCchhh
Confidence 999988899999999999999999999999999999999999999865322 23345778899999999999
Q ss_pred EEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 400 RLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 400 ~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
+++.|+.|+++++||+++.+.+....+....|.+.+|+|+++.+++|..+
T Consensus 210 Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 210 LLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999999999999999876666666667899999999999988887654
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=1.9e-23 Score=164.31 Aligned_cols=293 Identities=15% Similarity=0.170 Sum_probs=201.8
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+....... ...+...|..+.-. ++ ..+.+-+.|+.+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~-r~~g~~~it~lq~~-p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLI-RLFGRLFITNLQSI-PN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhh-hhhccceeeceeec-CC-cchhhcCCCceEEE
Confidence 4556789999999999988764 889999999999999988765322 22345667777766 33 56889999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeec-----CCCC----eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCS-----PVEP----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP- 288 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~- 288 (458)
|++..+..+..-. -.+.++.|. ++.+ .++.-+... -.+.+-|......+....
T Consensus 82 w~ia~s~~i~i~S-----i~~nslgFCrfSl~~~~k~~eqll~yp~rgs------------de~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 82 WTIAYSAFISIHS-----IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGS------------DETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEccCcceEEEee-----eeccccccccceeccCCCcchhheecCCccc------------chhhhhccCccceeEccCc
Confidence 9998755433221 112222222 2211 111111110 011222222111111111
Q ss_pred -cCCCCCcEEEEEEcc-CCC--EEEEEecCCeEEEEeCCCCce----------eeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699 289 -LGEDPPAITSLCFNH-NGK--ILAASAVDGMIHMFDMSAGLQ----------ITGWPAHDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 289 -~~~~~~~i~~~~~~~-~~~--~l~~~~~dg~i~v~d~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 354 (458)
-....+.++|..+.. ++. ++++|.++|.+.+||+.++.. ......|..+|.++.+.+.-..=++++
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg 224 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG 224 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC
Confidence 012234566666433 333 567888999999999998733 333457899999999988666667888
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV 434 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~ 434 (458)
.+..+..|++.........+.... .....+..+.+-||++.+|+++.|++|++|..++..++..+.-|.+.|+++
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~-----lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEIT-----LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred ccccceeeeeccccCcccccceEE-----ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 888999999875422221111111 123457889999999999999999999999999999888888999999999
Q ss_pred EECCCCCeEEEecCCCcEEEEeC
Q 012699 435 DWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+|+|+.+++|+++.|+.|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999997
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=2.6e-23 Score=168.57 Aligned_cols=298 Identities=15% Similarity=0.215 Sum_probs=219.6
Q ss_pred eeccCCCCeEEEEeCC-----CCCEEEEEeCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecC---CCeEEEEE
Q 012699 142 TFLGHTSPISCCRFSS-----SGNNIASASVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECK---SDRLLLIG 210 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~~~ 210 (458)
....|..+|..++|++ +.+.+++++. ..+.+|.......+ +......+......++|.-. ...+++++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457999999999985 2345666664 57888887654322 22222335567788888632 34588999
Q ss_pred cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-
Q 012699 211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP- 288 (458)
Q Consensus 211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~- 288 (458)
+.-|.|++.|+.+++....+..+. ..|..+.+.|+.. ++++++.|. .|++|++++..++..+-
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG--~sINeik~~p~~~qlvls~SkD~-------------svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHG--GSINEIKFHPDRPQLVLSASKDH-------------SVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred cceeEEEEEecchhhhccceeccC--ccchhhhcCCCCCcEEEEecCCc-------------eEEEEeccCCeEEEEecc
Confidence 999999999999999998888887 6899999999875 667777775 99999999999998884
Q ss_pred cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------e----------------e------eeeCCCCCeEE
Q 012699 289 LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------I----------------T------GWPAHDSAISS 340 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~----------------~------~~~~~~~~v~~ 340 (458)
..+|...|.++.|+++|.+|++++.|.++++|++...+. . . +-.-|...|.|
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDC 256 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDC 256 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHH
Confidence 467899999999999999999999999999999973211 0 0 11246667777
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec----CC-cccCCCCCCC--ceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN----CS-RFCDPESSKS--CRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~-~~~~~~~~~~--~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
+.|- |+++++-|-++.|..|.....++...... +. .+........ +-...+|.|-++.||.|...|.+++|
T Consensus 257 vrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 257 VRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred HHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 7775 57899999999999998843322211000 00 0001111122 23446677889999999999999999
Q ss_pred EccCCCccc-ccCC---CCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 414 QVRGHASGM-RTLP---HGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 414 ~~~~~~~~~-~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|++...+.. .... ....|...+|+.|+.+|+...+|++|.-||-
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999876642 2222 3468999999999999999999999999973
No 156
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-21 Score=176.33 Aligned_cols=422 Identities=12% Similarity=0.126 Sum_probs=266.4
Q ss_pred HHHhhccccCCCcceeeeeeccCCC---ceeeeeecCcceEEeccccccccccce------eeeeccC---CceeeeeCC
Q 012699 13 KEAQLSRLKNNSETIKYANIGQTKN---STLASGVNEESLLLSTNSSEACATTAT------HMGSAEM---GQTWASSRP 80 (458)
Q Consensus 13 ~~~~~~~l~~h~~~i~~~~~~s~~~---~~l~s~~~d~~~~iw~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~ 80 (458)
.+..+..|.+|..+++.+.+ .+.. .++.+++.||.|++|+...+.+...+. .....+. ....+....
T Consensus 46 Tg~~i~~l~~~~a~l~s~~~-~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 46 TGECITSLEDHTAPLTSVIV-LPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred hHhhhhhcccccCccceeee-cCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 34567799999999999998 4443 477899999999999999887663222 1111111 000111111
Q ss_pred ccceeEeeccCC--CcccccccccccCCcccceee---eccCCCCcCCCcceeccCCCeeeeeee---e------eeccC
Q 012699 81 ALSRFATNMSGN--DSISPSKLEFEDVGAGDIIQM---FNDGLYTENGRDAQGEEDFPEVKVDFL---E------TFLGH 146 (458)
Q Consensus 81 ~~~~~l~~~~~~--~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~---~------~~~~h 146 (458)
.+-..+.+.+.+ +..+-..+............. ...+.+++.|................- + .-..|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 222222222211 111111111111111111111 234445555554443333222221000 1 11247
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
+-.++|.+++|+++++|+|..||.|.+|.--. ..........-|..+|.+++|+ .++.+|++|+..|.+.+|.++++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe-cCCceEeecccceEEEEEeecCC
Confidence 77799999999999999999999999996433 2222223344577899999999 88999999999999999999998
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---C------CCCCc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---G------EDPPA 295 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---~------~~~~~ 295 (458)
+ .+-+..-. ++|..+.++|++...+....|. .|.+....+......+.. . ...+-
T Consensus 284 ~-kqfLPRLg--s~I~~i~vS~ds~~~sl~~~DN-------------qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 284 K-KQFLPRLG--SPILHIVVSPDSDLYSLVLEDN-------------QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred C-cccccccC--CeeEEEEEcCCCCeEEEEecCc-------------eEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 8 33333333 7899999999999988888874 888887755443332211 1 12344
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-----CC------CCCeEEEEEcCCCCEEEEecC--------C
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-----AH------DSAISSILFGPDETSIFSLGS--------D 356 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~------~~~v~~~~~~~~~~~l~~~~~--------d 356 (458)
.+.++++|.-+.++..+..|.|.+||+.+.+.+..+. .+ .-.+++++.+..|.+++|.-. |
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~ 427 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD 427 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence 6778999977778888899999999998876665543 11 225777888888999988632 3
Q ss_pred C--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc-cCC-CEEEEEeCCccEEEEEccCCCcccccC-------
Q 012699 357 G--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD-VNG-RRLLVTSGSVRAPIYQVRGHASGMRTL------- 425 (458)
Q Consensus 357 g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~------- 425 (458)
| .+++|-.....+-..... .. ..+|.......++. |.. ...++++.||.+++|-+.+.+......
T Consensus 428 ~e~~LKFW~~n~~~kt~~L~T--~I--~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~ 503 (792)
T KOG1963|consen 428 GEVSLKFWQYNPNSKTFILNT--KI--NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA 503 (792)
T ss_pred ceEEEEEEEEcCCcceeEEEE--EE--ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee
Confidence 3 478888765443322211 11 12344444444443 333 378899999999999995443332211
Q ss_pred ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
-|..++++++|+.||. +++++.|++|.+||.
T Consensus 504 i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 504 IGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred eeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 2788999999999996 555667889999996
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=2.2e-22 Score=167.71 Aligned_cols=306 Identities=18% Similarity=0.281 Sum_probs=205.9
Q ss_pred eeeeCCccce-eEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699 75 WASSRPALSR-FATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC 153 (458)
Q Consensus 75 ~~~~~~~~~~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 153 (458)
..+.+.+... .+++|+.|..+++|.+.... |.+. ..+++.+..|..|+..|+++
T Consensus 17 ~s~dfq~n~~~~laT~G~D~~iriW~v~r~~----------------~~~~---------~~~V~y~s~Ls~H~~aVN~v 71 (434)
T KOG1009|consen 17 YSVDFQKNSLNKLATAGGDKDIRIWKVNRSE----------------PGGG---------DMKVEYLSSLSRHTRAVNVV 71 (434)
T ss_pred EEEEeccCcccceecccCccceeeeeeeecC----------------CCCC---------ceeEEEeecccCCcceeEEE
Confidence 3344444333 99999999999999998755 2221 14455778899999999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecCCC------C--------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 154 RFSSSGNNIASASVDGTVRIWTYDSS------T--------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 154 ~~~~~~~~l~s~~~dg~v~iwd~~~~------~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
.|+|+|+.||+|+.+|.|.+|....- . .........|...|..++|+ +++.++++++.|..+++|
T Consensus 72 Rf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 72 RFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-PDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred EEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhcc-CCCceeeeeeccceEEEE
Confidence 99999999999999999999976521 1 11112233466889999999 889999999999999999
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------------------
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT------------------- 280 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~------------------- 280 (458)
|+..|+....+..+. ..+..++|.|-++++++-+.++. .+.+.+..
T Consensus 151 Dv~~G~l~~~~~dh~--~yvqgvawDpl~qyv~s~s~dr~-------------~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHE--HYVQGVAWDPLNQYVASKSSDRH-------------PEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred EeccceeEeeccccc--cccceeecchhhhhhhhhccCcc-------------cceeeeeeeeeeeeeeeeEeeecccCC
Confidence 999999999888777 46999999999999999888862 22222211
Q ss_pred --CceeEEeecCCCCCcEEEEEEccCCCEEEEEec----CC-----eEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCC
Q 012699 281 --WKAMTVLPLGEDPPAITSLCFNHNGKILAASAV----DG-----MIHMFDMSA-GLQITGWPAHDSAISSILFGPDET 348 (458)
Q Consensus 281 --~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg-----~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 348 (458)
++..+.+.-+.-+.-...++|+|+|.++++... .+ ..++|+-.. .++...++....++..+.|+|-
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV-- 293 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV-- 293 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee--
Confidence 111122211111234567889999999887542 12 234444322 2344455555555555555542
Q ss_pred EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CC
Q 012699 349 SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PH 427 (458)
Q Consensus 349 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h 427 (458)
.|.++..... . . +---|-+-.+|+++. +.+++||.++..+..... -|
T Consensus 294 ------------y~elrp~~~~-------~----------~--~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nih 341 (434)
T KOG1009|consen 294 ------------YYELRPLSSE-------K----------F--LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIH 341 (434)
T ss_pred ------------EEEecccccc-------c----------c--ccccccceEEEEeec-ceEEEeccccccceEEEeeee
Confidence 2222211000 0 0 111123334455544 569999998876665554 48
Q ss_pred CCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 428 GAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 428 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
-..+++++|++||..|+..|.||...+-
T Consensus 342 y~~iTDiaws~dg~~l~vSS~DGyCS~v 369 (434)
T KOG1009|consen 342 YSAITDIAWSDDGSVLLVSSTDGFCSLV 369 (434)
T ss_pred eeeecceeecCCCcEEEEeccCCceEEE
Confidence 8999999999999999999999976543
No 158
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.91 E-value=1.7e-21 Score=174.36 Aligned_cols=281 Identities=10% Similarity=0.179 Sum_probs=181.2
Q ss_pred EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-cCCCcEEEEEcCC-CceeeeccCCCCCCcee
Q 012699 163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADGGIKAWNVDA-KRVVCDLNTTDAFPSVL 240 (458)
Q Consensus 163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~ 240 (458)
++...++.|.+|++.+..................++++ +++++|+++ ..++.|.+|+++. ++.. ............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~-~~~~~~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALT-FAAESPLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceE-EeeeecCCCCce
Confidence 44467899999999643222222333344567788999 566666555 4588999999973 3321 111111113467
Q ss_pred eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEE
Q 012699 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIH 318 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~ 318 (458)
.++++|+++.++++.... +.|.+|++.+.. ................++++|+++++++++ .++.|.
T Consensus 84 ~i~~~~~g~~l~v~~~~~------------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 84 HISTDHQGRFLFSASYNA------------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred EEEECCCCCEEEEEEcCC------------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 899999999998887543 699999997422 211111111223467788999999886655 468999
Q ss_pred EEeCCCCceee-------eeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCce
Q 012699 319 MFDMSAGLQIT-------GWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCR 389 (458)
Q Consensus 319 v~d~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v 389 (458)
+||+.+...+. ... .......++|+|++++++++.. ++.|.+|++... +.....................
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 99997632221 111 2344678999999999988776 899999999742 1211111111111111122344
Q ss_pred eEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCC---CCcEEEEEECCCCCeEEEecC-CCcEEEEeCC
Q 012699 390 HEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPH---GAAITTVDWHPTLPMFLTGSA-DHSVQVMSLS 458 (458)
Q Consensus 390 ~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~l~ 458 (458)
..+.++|+|++|+++.. ++.|.+|+++.......+.++ ......++|+|+|++|+++.. +++|.+|+++
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 56899999999999865 689999999655433333332 235668999999998887665 8999999863
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.4e-22 Score=170.78 Aligned_cols=248 Identities=17% Similarity=0.293 Sum_probs=185.3
Q ss_pred EEEEeCC-------CCCEEEEEeCCCcEEEEecCCCCCCCcc-------------------ccccCCCceEEEEEecCCC
Q 012699 151 SCCRFSS-------SGNNIASASVDGTVRIWTYDSSTPASRN-------------------ATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 151 ~~~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~~~ 204 (458)
.|+.|.. .|+++|.|..|..|.|||+.-...+... ....|...|..++|+....
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666642 3689999999999999998533221111 1123555678888986778
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCC-c
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-K 282 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~ 282 (458)
+.|++|+.|.+|.+||+.++++..++..+. ..|.++.|+|... .+++|+.+ +++.+.|.+.. .
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~~p~~LLsGs~D-------------~~V~l~D~R~~~~ 321 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPYEPSVLLSGSYD-------------GTVALKDCRDPSN 321 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcC--CceeEEEecCCCceEEEecccc-------------ceEEeeeccCccc
Confidence 899999999999999999999999988655 7899999999876 66677777 59999999942 2
Q ss_pred eeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeE
Q 012699 283 AMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKI 359 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i 359 (458)
.-..+++. +.|..++|.|. ...+++++.||.|+-+|+|+ ++++.++++|.++|.++++++. ..++++++.|+.+
T Consensus 322 s~~~wk~~---g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 322 SGKEWKFD---GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred cCceEEec---cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 22233322 45899999995 45778888999999999998 5999999999999999999884 4578899999999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCcccc
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHASGMR 423 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~~~~ 423 (458)
++|++........... ...-+...++++.|+-. .|++|+..+.+++||+.+.....+
T Consensus 399 klw~~~~~~~~~v~~~-------~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEH-------SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEEeecCCCCcccccc-------cccccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence 9999986433211111 11112256777888765 456677778899999987755443
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.7e-22 Score=172.65 Aligned_cols=266 Identities=16% Similarity=0.266 Sum_probs=205.4
Q ss_pred eeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccC
Q 012699 27 IKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDV 105 (458)
Q Consensus 27 i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 105 (458)
+..+.+ +..+ -.+++-+.|..+++|.-... .+.++...-........+.......|+++|+..+.++|||++...
T Consensus 37 ~~s~~w-~~~n~lvvas~~gdk~~~~~~K~g~--~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl- 112 (673)
T KOG4378|consen 37 DFSFNW-QRRNFLVVASMAGDKVMRIKEKDGK--TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL- 112 (673)
T ss_pred ceeeec-cccceEEEeecCCceeEEEecccCC--CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH-
Confidence 778888 4444 34455667888888865544 223333222222222334444566899999999999999997522
Q ss_pred CcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc
Q 012699 106 GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 185 (458)
+.+.+++|+..|+++.++....+||+++..|.|.|..+.++.... .
T Consensus 113 ---------------------------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt-~ 158 (673)
T KOG4378|consen 113 ---------------------------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT-T 158 (673)
T ss_pred ---------------------------------HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc-c
Confidence 556788999999999999999999999999999999998876542 1
Q ss_pred ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcc
Q 012699 186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSN 264 (458)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 264 (458)
.....+..|.-+.|+|....+|.+++.+|.|.+||+....+...+.. .|..+...++|+|... ++++.+.|.
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dk------ 231 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDK------ 231 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccc------
Confidence 22233456778999988888899999999999999998777655433 2346889999999776 566777774
Q ss_pred eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEE
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILF 343 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~ 343 (458)
.|.+||.+..+....+... .+...++|+++|.+|++|...|.|..||++. ..++..+.+|...|++++|
T Consensus 232 -------ki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 232 -------KINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred -------eEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 9999999988887777543 3589999999999999999999999999986 5778999999999999999
Q ss_pred cCCC
Q 012699 344 GPDE 347 (458)
Q Consensus 344 ~~~~ 347 (458)
-|..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8764
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=162.95 Aligned_cols=286 Identities=14% Similarity=0.202 Sum_probs=198.7
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-C
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-P 237 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~ 237 (458)
..+|++...|+|++||..+++... ....++..+..+.|... ....+.+++.||+|++||+++......+....+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~--~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE--EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 468888889999999999876654 23345566778888732 5678999999999999999988776665554443 3
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEcc-CCCEEEEEecCC
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH-NGKILAASAVDG 315 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg 315 (458)
+-.+++..-.+..++++..-. ..+..+.+||.+..+. +..+ .+.|...|+++.|+| +.++|++|+.||
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~---------~s~A~v~lwDvR~~qq~l~~~-~eSH~DDVT~lrFHP~~pnlLlSGSvDG 188 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELT---------RSDASVVLWDVRSEQQLLRQL-NESHNDDVTQLRFHPSDPNLLLSGSVDG 188 (376)
T ss_pred cceEeeccCcCCeEEeccccc---------cCceEEEEEEeccccchhhhh-hhhccCcceeEEecCCCCCeEEeecccc
Confidence 455666665777777775432 1124899999998777 4444 467889999999999 467999999999
Q ss_pred eEEEEeCCCCc---eeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCccc---CCCCCCCc
Q 012699 316 MIHMFDMSAGL---QITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC---DPESSKSC 388 (458)
Q Consensus 316 ~i~v~d~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~ 388 (458)
.|.+||+.... .+...-.|...|.++.|..++ +.|.+-+...+..+|+++.+....+........ ..+.....
T Consensus 189 LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY 268 (376)
T KOG1188|consen 189 LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDY 268 (376)
T ss_pred eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhh
Confidence 99999987542 222333567889999998876 468888999999999999876554332210000 00011112
Q ss_pred eeEEEEccCCCEEEEEeC-CccEEEEEccC------CCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 389 RHEMALDVNGRRLLVTSG-SVRAPIYQVRG------HASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+...-...++..+++++. .+...++-+.. ...+..+. +|..-|+++.|...+.++.|||+||.+.+|..
T Consensus 269 ~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 269 VINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 222222224555565555 45555555432 22233333 47888999999988999999999999999973
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.5e-22 Score=170.60 Aligned_cols=259 Identities=15% Similarity=0.220 Sum_probs=185.9
Q ss_pred CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC
Q 012699 79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS 158 (458)
Q Consensus 79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 158 (458)
..+.+.|+|.|+.+..|.|||+.....-........ -.+.......+.-..-.+|+..|..++|+..
T Consensus 188 ~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs-------------~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 188 SGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGS-------------KASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred CCCCcceEEEeccCceeEEeccccccccccceeech-------------hhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 345788999999999999999987652211111110 0000000000111223579999999999875
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-eeeccCCCCC
Q 012699 159 -GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-VCDLNTTDAF 236 (458)
Q Consensus 159 -~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~ 236 (458)
.+.||+||.|.+|++||+.++++.. ....|+.+|.++.|+|.....|++|+.|+++.+.|.+.... -..++..
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~--s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~--- 329 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKS--SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD--- 329 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcce--ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---
Confidence 4578999999999999999999864 33457889999999999999999999999999999984222 1122222
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEEEEEEccC-CCEEEEEecC
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAITSLCFNHN-GKILAASAVD 314 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 314 (458)
+.|..++|.|.....+.++.+. |.++-+|++.. +++..+ ..|..+|.++++++. ..++++++.|
T Consensus 330 g~VEkv~w~~~se~~f~~~tdd------------G~v~~~D~R~~~~~vwt~--~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDD------------GTVYYFDIRNPGKPVWTL--KAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred cceEEEEecCCCceeEEEecCC------------ceEEeeecCCCCCceeEE--EeccCCcceEEecCCCCcceeecccc
Confidence 5789999999888666555444 79999999986 555555 578889999999985 4578899999
Q ss_pred CeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCe
Q 012699 315 GMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 315 g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 369 (458)
+.|++|++....+ +..-...-+...|.++.|+-. .++.|+..+.+++||+.+...
T Consensus 396 ~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 9999999875443 221111123467778888654 577788888899999987543
No 163
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.90 E-value=4.5e-20 Score=152.42 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=184.6
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKAWNVDAK 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~ 224 (458)
...+..+.|+.+...|..|+.|| .++|+.+..... ......+..|.-+-|+ ..+++..+.+ ..++++++..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~--~~~~~~~~~IvEmLFS---SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC--FSKDTEGVSIVEMLFS---SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh--hcccCCCeEEEEeecc---cceeEEEecCCCceEEEEEcccC
Confidence 34577778999999999999988 577776554331 1122233456666776 4455555444 35999999988
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEcc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNH 303 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~ 303 (458)
..++.+... .+|.++.++.+ .++..-.+ .|.|||+++.+.+.++... .++..+.++++++
T Consensus 79 ~~ICe~~fp---t~IL~VrmNr~--RLvV~Lee--------------~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 79 TTICEIFFP---TSILAVRMNRK--RLVVCLEE--------------SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN 139 (391)
T ss_pred ceEEEEecC---CceEEEEEccc--eEEEEEcc--------------cEEEEecccceeehhhhccCCCccceEeeccCC
Confidence 888877665 46777777654 45555443 8999999999999888654 5666677777777
Q ss_pred CCCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-EEEEeccCCCeeEEeecCCccc
Q 012699 304 NGKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK-IIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 304 ~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
.+.+++.-+ ..|.|.+||+.+-+++..+.+|.+++.+++|+++|.+|||+|+.|+ ||++.+.+++.....++..
T Consensus 140 ~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--- 216 (391)
T KOG2110|consen 140 ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--- 216 (391)
T ss_pred CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc---
Confidence 788998743 3689999999999999999999999999999999999999999998 7999999887776554322
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
....|.+++|+|++++|++.+..++|++|.++.
T Consensus 217 ----~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 217 ----YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ----eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 245689999999999999999999999999864
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.4e-23 Score=192.80 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=212.1
Q ss_pred EEEeCCCCC-EEEEE----------eCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecCCCe---EEEEEcCCC
Q 012699 152 CCRFSSSGN-NIASA----------SVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECKSDR---LLLIGTADG 214 (458)
Q Consensus 152 ~~~~~~~~~-~l~s~----------~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg 214 (458)
.++|+|.+. ++++| +.+.++-||.+.-.... ............+.++|.+.... +|+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 467788775 44443 23455666655432221 12233444567899999854433 589999999
Q ss_pred cEEEEEcCC---Cce-eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699 215 GIKAWNVDA---KRV-VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 215 ~i~~wd~~~---~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
.|.+||... +.. ........|.+.|..+.|++... ++++|+.+ |.|.|||+...+.......
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~-------------geI~iWDlnn~~tP~~~~~ 157 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD-------------GEILIWDLNKPETPFTPGS 157 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC-------------CcEEEeccCCcCCCCCCCC
Confidence 999999865 221 11122234458999999999887 77777777 6999999998555444422
Q ss_pred CCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCC--CeEEEEEcCCC-CEEEEecCCC---eEEEE
Q 012699 290 GEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDS--AISSILFGPDE-TSIFSLGSDG---KIIEW 362 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~dg---~i~iw 362 (458)
......|.+++|+.. ...|++++.+|.+.|||++..+++..+..+.+ .+..++|+|+. ..|++++.|. .|.+|
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence 234568999999985 45788899999999999999888887776655 46789999976 4566666644 49999
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
|++....+. .....|...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+......+..+.|+|...
T Consensus 238 DlR~assP~--------k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 238 DLRFASSPL--------KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred cccccCCch--------hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence 998654332 2235788999999999966 8899999999999999999988777777778899999999988
Q ss_pred -eEEEecCCCcEEEEeC
Q 012699 442 -MFLTGSADHSVQVMSL 457 (458)
Q Consensus 442 -~l~s~~~dg~v~iw~l 457 (458)
.++.++.||.|.|+.+
T Consensus 310 ~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSL 326 (1049)
T ss_pred chhhhheeccceeeeee
Confidence 8888999999999986
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.1e-22 Score=174.78 Aligned_cols=216 Identities=19% Similarity=0.346 Sum_probs=163.4
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------CCccccccCCCceEEEEEecCCCeEEEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------ASRNATIYCGTEIMSLEWECKSDRLLLI 209 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 209 (458)
+.+.+|++|.++|.|+++.++++.+++|+-||+|+.|++....- ........|...++.++++ .....|++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s-~~~~~Lls 413 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALS-STKDRLLS 413 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeec-ccccceee
Confidence 37789999999999999999999999999999999997652211 1122345677889999999 66777999
Q ss_pred EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
++.||+++.|+...... +++...........+.+.........++... +.-.++++........+..
T Consensus 414 cs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~------------~~~~~~~~ev~s~~~~~~s 480 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF------------GYTSIDDMEVVSDLLIFES 480 (577)
T ss_pred ecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhccc------------ccccchhhhhhhheeeccc
Confidence 99999999999877666 4555544444555565554443332222211 2333344444444433332
Q ss_pred CCC-----CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 290 GED-----PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 290 ~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
... ...++.+.++|...+.+++..|+.|+++|..+++++....+|...++++++.|+|.+|++++.|+.+++|.+
T Consensus 481 ~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 481 SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 211 235788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 012699 365 QNQ 367 (458)
Q Consensus 365 ~~~ 367 (458)
...
T Consensus 561 d~k 563 (577)
T KOG0642|consen 561 DVK 563 (577)
T ss_pred cch
Confidence 754
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=2.8e-21 Score=154.14 Aligned_cols=267 Identities=16% Similarity=0.240 Sum_probs=196.4
Q ss_pred CCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCC-------CcEEEEEcCCCc---------eeee
Q 012699 167 VDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTAD-------GGIKAWNVDAKR---------VVCD 229 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~---------~~~~ 229 (458)
.|+.|.+.+++...... ......+.++|+.++-+|.+.++|+++..+ -.+.+|.+.... ++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 46777777776544322 223444568999999998888888887653 246799886432 2222
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecC---CCCCcEEEEEEcc--
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLG---EDPPAITSLCFNH-- 303 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~---~~~~~i~~~~~~~-- 303 (458)
+... +.+.+.++.|.|++..+++.... .|.+|++..... ...+... ++....++-+|+|
T Consensus 118 Ldte-avg~i~cvew~Pns~klasm~dn--------------~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 118 LDTE-AVGKINCVEWEPNSDKLASMDDN--------------NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred CCHH-HhCceeeEEEcCCCCeeEEeccC--------------ceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 2222 22578999999999999988754 999999988766 3333221 2345678889999
Q ss_pred CCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 304 NGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 304 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
+++.+++. .|+++..||+++.+....+ .+|...|..+.|+|+.. +|++|++||.|++||.++.+.+ +..
T Consensus 183 dgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p--------v~e 253 (370)
T KOG1007|consen 183 DGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP--------VQE 253 (370)
T ss_pred ccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc--------ccc
Confidence 67777764 5899999999987766655 47888999999999765 6889999999999999976543 344
Q ss_pred CCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCC-----------------------------cccccCCCCCcE
Q 012699 382 PESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHA-----------------------------SGMRTLPHGAAI 431 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~-----------------------------~~~~~~~h~~~v 431 (458)
..+|..++.++.|+|. .+++++++.|..|.+|....-. .+..+..|.+.|
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV 333 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence 5679999999999995 5788899999999998653211 111233699999
Q ss_pred EEEEECCCCC-eEEEecCCCcEEEEeC
Q 012699 432 TTVDWHPTLP-MFLTGSADHSVQVMSL 457 (458)
Q Consensus 432 ~~~~~~~~~~-~l~s~~~dg~v~iw~l 457 (458)
.+++|+.-.+ .+|+-+.||.+.|=++
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecC
Confidence 9999998888 6788999999987443
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.5e-22 Score=167.04 Aligned_cols=252 Identities=17% Similarity=0.258 Sum_probs=193.8
Q ss_pred cccCCCceEEEEEecCCC-eEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCC
Q 012699 187 TIYCGTEIMSLEWECKSD-RLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGS 262 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~ 262 (458)
...+..+|.+++|+|... .++++|..-|.|-+||+.+.+. -..+....+..+|.++.|+|... .+++.+.|
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD----- 256 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD----- 256 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC-----
Confidence 344678899999998766 7888999999999999963321 12223334447899999999765 66677777
Q ss_pred cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEE
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSI 341 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~ 341 (458)
|+|++-|++.......+........+..+.|+.+...++.+..=|...+||++++.. ...+.-|...|+.+
T Consensus 257 --------GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 257 --------GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred --------ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 699999999877666665544556688888988888788887778999999998544 66777889999999
Q ss_pred EEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc---C
Q 012699 342 LFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR---G 417 (458)
Q Consensus 342 ~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~---~ 417 (458)
+++|. ..+|+|+|.|++.+|||++...... ..+.....|...|.+..|||++-.|++.+.|..|+|||.. .
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa 403 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA 403 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence 99994 4578999999999999998653211 1244556788899999999998889999999999999985 3
Q ss_pred CCcccccCCCCC------cEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 418 HASGMRTLPHGA------AITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 418 ~~~~~~~~~h~~------~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+.....|.. .....+|.|+..++++|-.-..|-|+|
T Consensus 404 ~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 404 KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 333333333432 345568999999999998888888876
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=2.1e-21 Score=171.98 Aligned_cols=271 Identities=14% Similarity=0.204 Sum_probs=210.7
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.|..++|-|||..|+.+. +..+.+||...+.... ....|...|++++|+ .++..+++|+.|..+.+|+..-...+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llq--tLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQ--PLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccc--ccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceee
Confidence 789999999999887765 4579999999887754 456788899999999 899999999999999999865433322
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
..|...|.++.|+|-...+++++-+ ..-+|........+ . .....+.+.+|..||++|
T Consensus 90 ----YSH~D~IQCMsFNP~~h~LasCsLs--------------dFglWS~~qK~V~K-~---kss~R~~~CsWtnDGqyl 147 (1081)
T KOG1538|consen 90 ----YSHNDAIQCMSFNPITHQLASCSLS--------------DFGLWSPEQKSVSK-H---KSSSRIICCSWTNDGQYL 147 (1081)
T ss_pred ----eccCCeeeEeecCchHHHhhhcchh--------------hccccChhhhhHHh-h---hhheeEEEeeecCCCcEE
Confidence 1233689999999999999999876 77788876543332 1 233568999999999999
Q ss_pred EEEecCCeEEEEeCCCCceeeeee---CCCCCeEEEEEcCCC-----CEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 309 AASAVDGMIHMFDMSAGLQITGWP---AHDSAISSILFGPDE-----TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
+.|-.+|+|.+-+.. +++...+. +.+.+|++++|+|.. ..+++.....++.+|.+... . ..
T Consensus 148 alG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~--------Ig 216 (1081)
T KOG1538|consen 148 ALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--Q--------IG 216 (1081)
T ss_pred EEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--e--------ec
Confidence 999999999998743 44433333 467899999999943 46777777888888887642 1 11
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
......-...++.+.|+|.+++.|+.++.+++|.-++- .+...-.....|+.++..|+++.++.|+.||+|.-|++
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe-EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 12234445788999999999999999999999987653 22333345678999999999999999999999988775
No 169
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.7e-21 Score=160.89 Aligned_cols=249 Identities=17% Similarity=0.268 Sum_probs=181.2
Q ss_pred eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699 77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS 156 (458)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 156 (458)
+.-.+++.+.++.+..|.+.+|++..... +++..+-.. .....+++.++.+|.+.=+.++||
T Consensus 159 ~~~~~~~~~~aswse~G~V~Vw~l~~~l~------------~l~~~~~~~------~~s~~~Pl~t~~ghk~EGy~LdWS 220 (440)
T KOG0302|consen 159 VSRLGNEVLCASWSENGRVQVWDLAPHLN------------ALSEPGLEV------KDSEFRPLFTFNGHKGEGYGLDWS 220 (440)
T ss_pred ecccCCcceeeeecccCcEEEEEchhhhh------------hhcCccccc------cccccCceEEecccCccceeeecc
Confidence 33334778899999999999999864221 011111100 012234788899999999999999
Q ss_pred CC-CCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC
Q 012699 157 SS-GNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD 234 (458)
Q Consensus 157 ~~-~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 234 (458)
|- ...|+||.--+.|++|...++.... ......|...|..++|+|.....|++|+.||+|+|||++.+.....+....
T Consensus 221 p~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 221 PIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred cccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence 93 2358888888899999988765432 222344778999999999899999999999999999999984433333344
Q ss_pred CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecCCCCCcEEEEEEccC-CCEEEE
Q 012699 235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLGEDPPAITSLCFNHN-GKILAA 310 (458)
Q Consensus 235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~ 310 (458)
+.+.|.-+.|+....+|++|+.+ |+++|||++.. +++..++ -|..+|+++.|+|. ...|++
T Consensus 301 h~sDVNVISWnr~~~lLasG~Dd-------------Gt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 301 HNSDVNVISWNRREPLLASGGDD-------------GTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred cCCceeeEEccCCcceeeecCCC-------------ceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEe
Confidence 55789999999999988888887 69999999863 4555554 57788999999995 567888
Q ss_pred EecCCeEEEEeCCCCce----------------eeeeeCC--CCCeEEEEEcCCC-CEEEEecCCCe
Q 012699 311 SAVDGMIHMFDMSAGLQ----------------ITGWPAH--DSAISSILFGPDE-TSIFSLGSDGK 358 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~~----------------~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg~ 358 (458)
++.|..|.+||+.--.- .+-+-.| ...+..+.|+++- .++++.+.||.
T Consensus 366 sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 89999999999852110 0111123 4467889999843 37888888874
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=172.38 Aligned_cols=270 Identities=17% Similarity=0.221 Sum_probs=207.6
Q ss_pred eeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc
Q 012699 113 MFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT 187 (458)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 187 (458)
..++.+|.|||..+..+..+..+.+ ..+.++++|.+.|+|++|+.||+++|+|+.|..|.+|+-.-... ..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~----Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI----LK 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce----ee
Confidence 4567788999998887776655544 57889999999999999999999999999999999998543322 34
Q ss_pred ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
..|+..|.|+.|+ |-.+.|++++-+ ..-+|..+...... +....++.+.+|..||.+++.|-.+
T Consensus 90 YSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsWtnDGqylalG~~n---------- 153 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSWTNDGQYLALGMFN---------- 153 (1081)
T ss_pred eccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHh----hhhheeEEEeeecCCCcEEEEeccC----------
Confidence 5688899999999 556667777654 57788776544322 2222578999999999999999988
Q ss_pred ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC-----CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699 268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG-----KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL 342 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 342 (458)
|+|.+-+.........-...+...+|.+++|+|.. ..+++.....++..|.+. |+.+..-+.-.-...|+.
T Consensus 154 ---GTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 154 ---GTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred ---ceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe
Confidence 69998865544444443445567789999999953 477888888888888876 555543333445567899
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
+.|+|.++..|+.|+.+.+|--..- ++........+|+.++..|+++++++|+.||+|.-|++-
T Consensus 230 Yf~NGEy~LiGGsdk~L~~fTR~Gv----------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSDKQLSLFTRDGV----------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eccCCcEEEEccCCCceEEEeecCe----------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999965421 222223467889999999999999999999999988764
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.2e-20 Score=152.94 Aligned_cols=281 Identities=13% Similarity=0.154 Sum_probs=199.0
Q ss_pred eeeeeeccCCCceeeeeecCcceEEecccccccccc---------ceeeeeccCCceee-------eeCCccceeEeecc
Q 012699 27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATT---------ATHMGSAEMGQTWA-------SSRPALSRFATNMS 90 (458)
Q Consensus 27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~---------~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 90 (458)
...+.+ +|||..+++-+.|+.+++|++-..-.... ............+. -...++..++++.+
T Consensus 52 ~kgckW-SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKW-SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hcccee-CCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456788 99999999999999999998754432211 01111111111111 11234667788888
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCC---CeEEEEeCCCCCEEEEEeC
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTS---PISCCRFSSSGNNIASASV 167 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~s~~~ 167 (458)
.+.-|.+|+.-... .-++... -.|.. ...+++|+|||.+|+.| .
T Consensus 131 r~~PIh~wdaftG~--------------------lraSy~~------------ydh~de~taAhsL~Fs~DGeqlfaG-y 177 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGK--------------------LRASYRA------------YDHQDEYTAAHSLQFSPDGEQLFAG-Y 177 (406)
T ss_pred ccCceeeeeccccc--------------------cccchhh------------hhhHHhhhhheeEEecCCCCeEeec-c
Confidence 88888888864422 1111000 01222 24589999999999876 4
Q ss_pred CCcEEEEec-CCCCCCCccccccC-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 168 DGTVRIWTY-DSSTPASRNATIYC-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 168 dg~v~iwd~-~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
...|+++|+ +.+..-....+..+ .+-+.+++|+|.+...++.++....+-+|.-..+.++..+..+. +.|+.
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~--gGvTh 255 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG--GGVTH 255 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC--CCeee
Confidence 689999998 44433222222223 45688999999899999999999999999999888888777555 78999
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC---cEEEEEEccCCCEEEEEecCCeEE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP---AITSLCFNHNGKILAASAVDGMIH 318 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~ 318 (458)
+.|.++|+.++++.... ..|..||++..+.. ...+..|.. .-.-....|++++|++|+.||.|+
T Consensus 256 L~~~edGn~lfsGaRk~------------dkIl~WDiR~~~~p-v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKD------------DKILCWDIRYSRDP-VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred EEeccCcCeecccccCC------------CeEEEEeehhccch-hhhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 99999999999998765 39999999864321 112223322 112345578899999999999999
Q ss_pred EEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 319 MFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 319 v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
+||+.+ +..+..+..+...++.++++|--.++++++..
T Consensus 323 vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 323 VWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999998 77788889999999999999998888887754
No 172
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=7.8e-21 Score=167.38 Aligned_cols=250 Identities=19% Similarity=0.295 Sum_probs=180.3
Q ss_pred EEEEec--CCCeEEEEEcCCCcEEEEEcCCCcee---e-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699 196 SLEWEC--KSDRLLLIGTADGGIKAWNVDAKRVV---C-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269 (458)
Q Consensus 196 ~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
+..|++ ....+|+.+.+||.|.++|....... + ......|.+.|.++.|-|....|++++.|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs----------- 122 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS----------- 122 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCc-----------
Confidence 344542 45678999999999999998764432 1 122234557899999999777888888885
Q ss_pred ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc----------------------
Q 012699 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL---------------------- 326 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~---------------------- 326 (458)
++++||+++.+....-..-+|...+.+++|.|. ...|++|+.||.|.|||++-..
T Consensus 123 --T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptps 200 (720)
T KOG0321|consen 123 --TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPS 200 (720)
T ss_pred --eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCC
Confidence 999999999888776445689999999999995 5678999999999999986321
Q ss_pred -----eeeeeeCCCCCeEE---EEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecC--CcccCCCCCCCceeEEEEc
Q 012699 327 -----QITGWPAHDSAISS---ILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNC--SRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 327 -----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s 395 (458)
.+....++...|.+ +.+..|...||+++. |+.|++||+++.......... ..+.........+.++..+
T Consensus 201 kp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 201 KPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred chhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 11222345555555 555678889999988 999999999976544322111 1111222234567788888
Q ss_pred cCCCEEEEEeCCccEEEEEccCCCcc--cccCCCCC--cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 396 VNGRRLLVTSGSVRAPIYQVRGHASG--MRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 396 ~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
..|.+|++.+.|+.|+.|++.+.... ..+.++.. .-..-..+||+.+|++|+.|...++|.++
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 89999999999999999999876432 22223321 11223568999999999999999999874
No 173
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.88 E-value=3.7e-20 Score=174.73 Aligned_cols=309 Identities=15% Similarity=0.195 Sum_probs=210.7
Q ss_pred eeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEE
Q 012699 135 VKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLL 208 (458)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~ 208 (458)
.+...+..+..|...|..++.+++. .+++|||.||+|++|+...-... ........+..+.++.+. .+++.++
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~-~~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC-GNGDQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec-cCCCeEE
Confidence 3345778889999999999988754 99999999999999998643221 111222356788888888 7788899
Q ss_pred EEcCCCcEEEEEcCCCce-------eeeccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 209 IGTADGGIKAWNVDAKRV-------VCDLNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 209 ~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
.++.||.|++.+++.... ......... +.+.+ -++.....- ..+++++..+.|..||++.
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S-----------~~lvy~T~~~~iv~~D~r~ 1182 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQS-----------HVLVYATDLSRIVSWDTRM 1182 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeecccccccc-----------eeEEEEEeccceEEecchh
Confidence 999999999999876211 111111111 22222 222221111 1223333346999999999
Q ss_pred CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCC---CCEEEEec--
Q 012699 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPD---ETSIFSLG-- 354 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~l~~~~-- 354 (458)
......++.....+.|++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+++.+..+|- ....++++
T Consensus 1183 ~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1183 RHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 8888877777777899999999999999999999999999999988888775 44568888887773 23444444
Q ss_pred CCCeEEEEeccCCCeeEEeecC---CcccC-------CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNC---SRFCD-------PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--- 421 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~--- 421 (458)
..+.|.+|++.++......... ..+.. .....-.....++...+.++.+|+.|..|+.||.......
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~ 1342 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYA 1342 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccccc
Confidence 4778999999987443322221 11110 0122223344555566788999999999999997522111
Q ss_pred ---------------------------------------------ccc--------CCCCCcEEEEEECCCCC-eEEEec
Q 012699 422 ---------------------------------------------MRT--------LPHGAAITTVDWHPTLP-MFLTGS 447 (458)
Q Consensus 422 ---------------------------------------------~~~--------~~h~~~v~~~~~~~~~~-~l~s~~ 447 (458)
... ..|.++|+++++....+ +|++++
T Consensus 1343 ~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s 1422 (1431)
T KOG1240|consen 1343 VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSS 1422 (1431)
T ss_pred ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEec
Confidence 000 03778899998876654 899999
Q ss_pred CCCcEEEEe
Q 012699 448 ADHSVQVMS 456 (458)
Q Consensus 448 ~dg~v~iw~ 456 (458)
.||.|+||.
T Consensus 1423 ~dG~IkiWk 1431 (1431)
T KOG1240|consen 1423 RDGVIKIWK 1431 (1431)
T ss_pred CCCeeeecC
Confidence 999999994
No 174
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.5e-19 Score=161.78 Aligned_cols=415 Identities=14% Similarity=0.132 Sum_probs=264.6
Q ss_pred ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699 20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK 99 (458)
Q Consensus 20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 99 (458)
|.|-...-..-.| |+|+++++... +..+.|+...++.+..... -+-.+.-.......+..-.++.+++.+|+|++|+
T Consensus 12 lgg~n~~~~~avf-SnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd 88 (792)
T KOG1963|consen 12 LGGRNGNKSPAVF-SNDAKFLFLCT-GNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWD 88 (792)
T ss_pred eccccceeccccc-ccCCcEEEEee-CCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEec
Confidence 3343333344467 99999988766 6789999999998775222 1222222222222223347888999999999999
Q ss_pred cccccCCcc------cceeeeccCCCCcCCCcc-eeccCCCeee-----------eeeee--------eeccCCCCeEEE
Q 012699 100 LEFEDVGAG------DIIQMFNDGLYTENGRDA-QGEEDFPEVK-----------VDFLE--------TFLGHTSPISCC 153 (458)
Q Consensus 100 ~~~~~~~~~------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-----------~~~~~--------~~~~h~~~v~~~ 153 (458)
......... ...... ..++-.....+ +......... --.+. .+.+|.. -.++
T Consensus 89 ~~~~~Llkt~~~~~~v~~~~~-~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I 166 (792)
T KOG1963|consen 89 WSDGELLKTFDNNLPVHALVY-KPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSI 166 (792)
T ss_pred CCCcEEEEEEecCCceeEEEe-chhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccE
Confidence 765331100 000000 01110000000 0000000000 01111 1223333 3567
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecCCCC--CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--Cceeee
Q 012699 154 RFSSSGNNIASASVDGTVRIWTYDSST--PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA--KRVVCD 229 (458)
Q Consensus 154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~ 229 (458)
.+++.|.+.+..- +..+.+|+..... .........|.-.+.+.+++ +++++++++..||.|.+|.--. +.....
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s-pn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS-PNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEec-cccceEEEeccCCcEEEEeccccccccccc
Confidence 8888887665554 4568889887643 12222334455568999999 8899999999999999996433 221111
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (458)
...|-|...|.+++|+++|.++++|+.. |.+.+|.+.+++.. + ++.-..+|..+.++||+.+.+
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E-------------~VLv~Wq~~T~~kq--f-LPRLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGRE-------------GVLVLWQLETGKKQ--F-LPRLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccc-------------eEEEEEeecCCCcc--c-ccccCCeeEEEEEcCCCCeEE
Confidence 1223344789999999999999999998 59999999998832 2 234446799999999999999
Q ss_pred EEecCCeEEEEeCCCCceeeeeeCC-----------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 310 ASAVDGMIHMFDMSAGLQITGWPAH-----------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 310 ~~~~dg~i~v~d~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+...|..|.+..+.+.+...++.+- .+-.+.++++|..+.++-.+..|.|.+||+.+.........+..
T Consensus 309 l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 309 LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 9999999999988665443333321 33467788999777888899999999999998776654433322
Q ss_pred ccCC-C-CCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccC-----CCCCcEEEEEECCC-C
Q 012699 379 FCDP-E-SSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTL-----PHGAAITTVDWHPT-L 440 (458)
Q Consensus 379 ~~~~-~-~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~-----~h~~~v~~~~~~~~-~ 440 (458)
-... . ...-.+++++.+..|.++++.-. .-.+++|.......-..+. +|...+...+|.+. .
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r 468 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR 468 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc
Confidence 2111 1 23446788888889999998642 2368899887665443322 78877766666443 3
Q ss_pred C-eEEEecCCCcEEEEeC
Q 012699 441 P-MFLTGSADHSVQVMSL 457 (458)
Q Consensus 441 ~-~l~s~~~dg~v~iw~l 457 (458)
. .+++++.||.++||-+
T Consensus 469 s~~~vta~~dg~~KiW~~ 486 (792)
T KOG1963|consen 469 SVRCVTASVDGDFKIWVF 486 (792)
T ss_pred cceeEEeccCCeEEEEEE
Confidence 3 7999999999999976
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.5e-20 Score=156.32 Aligned_cols=298 Identities=14% Similarity=0.167 Sum_probs=219.2
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc---ccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---TTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
.-+++|...|+++.| ++++++||+|+.|...++|.++.--.. .+|..+.--..+..+.+.|.....++.+|..+++
T Consensus 50 KD~~~H~GCiNAlqF-S~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQF-SHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeee-ccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 457899999999999 999999999999999999998743221 4454444444455677889999999999999999
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--ccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LGHTSPISCCRFSSSGNNIASASVDGTVR 172 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 172 (458)
+...+++..+ .+..+ ....+.|+.+..+|..+.|++.+.++.|.
T Consensus 129 VI~HDiEt~q----------------------------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 129 VIKHDIETKQ----------------------------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS 174 (609)
T ss_pred eEeeecccce----------------------------------eeeeecccCcccceeecccCCCCceEEEEecCceEE
Confidence 9998887643 11111 12346899999999999999999999999
Q ss_pred EEecCCCC-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee-eecc----CCCCCCceeeeeecC
Q 012699 173 IWTYDSST-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV-CDLN----TTDAFPSVLDLKCSP 246 (458)
Q Consensus 173 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~----~~~~~~~v~~~~~~~ 246 (458)
+||..... ..........+.....+.|+|....+|++.+..+-+.+||.+..... .... .......-....|+|
T Consensus 175 ~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 175 FIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred EEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 99997765 33333333455678899999989999999999999999998754321 1111 111112235688999
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC------CcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------PAITSLCFNHNGKILAASAVDGMIHMF 320 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~dg~i~v~ 320 (458)
+|..+.+--... .-.+||+.+.++ ..++....+ ..+.+++|..+- .+++|+.+=.|++|
T Consensus 255 ~G~Q~msiRR~~-------------~P~~~D~~S~R~-~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 255 SGNQFMSIRRGK-------------CPLYFDFISQRC-FVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIW 319 (609)
T ss_pred CCCeehhhhccC-------------CCEEeeeecccc-eeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEE
Confidence 999888766543 455677765333 233332111 245667776554 48999999999999
Q ss_pred eCCC-----C------------------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 321 DMSA-----G------------------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 321 d~~~-----~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
.+.. | +.+..+++|..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 320 klP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 320 KLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 8742 1 2356778999999999999999999999999999999755
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.88 E-value=5.4e-20 Score=149.62 Aligned_cols=333 Identities=12% Similarity=0.124 Sum_probs=224.1
Q ss_pred eeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccc
Q 012699 30 ANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFE 103 (458)
Q Consensus 30 ~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 103 (458)
..| ||+|+++|+++.- .+.|-|.++-+.. ..+.++.|..+. ...+.....++.+.+|++..+
T Consensus 14 c~f-Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads----------~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 14 CSF-SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADS----------CHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred eeE-CCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccc----------eeeeeeeeccceEEEEEeecc
Confidence 478 9999999999866 6777777776554 566678888662 223444566778899998664
Q ss_pred cCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE-EEEEeCCCcEEEEecCCCCCC
Q 012699 104 DVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN-IASASVDGTVRIWTYDSSTPA 182 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~ 182 (458)
+ -.-.+..-..++.+++|||||+. |.+...|-.|.+|.+.+....
T Consensus 82 e----------------------------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 82 E----------------------------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred e----------------------------------eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 3 12233445678899999999965 566677899999999887654
Q ss_pred CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699 183 SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259 (458)
Q Consensus 183 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 259 (458)
. .......+..++|+ +++++.+..+.-...-.+++. .-..+..+.... -....+.|+|||..++.
T Consensus 128 ~---~~~pK~~~kg~~f~-~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laV------ 195 (447)
T KOG4497|consen 128 L---LPHPKTNVKGYAFH-PDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAV------ 195 (447)
T ss_pred E---ecccccCceeEEEC-CCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc--ccccCceECCCCcEEEE------
Confidence 2 22234556889999 788888777653211111111 112223333322 34678999999976554
Q ss_pred CCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------------
Q 012699 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------------ 327 (458)
Q Consensus 260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------------ 327 (458)
||.--.-.+..+ ...-.+..++|+|.+++|++|+.|+.+++.+--+.++
T Consensus 196 ----------------wd~~Leykv~aY---e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 196 ----------------WDNVLEYKVYAY---ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred ----------------ecchhhheeeee---eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 442211111111 1223588899999999999999999998866321110
Q ss_pred ------------------------------------------------eeeee------CCCCCeEEEEEcCCCCEEEEe
Q 012699 328 ------------------------------------------------ITGWP------AHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 328 ------------------------------------------------~~~~~------~~~~~v~~~~~~~~~~~l~~~ 353 (458)
+..++ ...-.+.-++|++|..++++-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 00111 112356779999999998887
Q ss_pred cC--CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699 354 GS--DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI 431 (458)
Q Consensus 354 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v 431 (458)
.+ -+.+-+||+++.+.. .......+|....|+|....|++..+..++++|...+.. .....+..-.|
T Consensus 337 nd~~PnalW~Wdlq~l~l~----------avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~-~V~vP~~GF~i 405 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNLKLH----------AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-VVGVPKKGFNI 405 (447)
T ss_pred cCCCCceEEEEechhhhhh----------hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-EEecCCCCcee
Confidence 54 456999999875322 122345668999999999999999999999999998743 23333444789
Q ss_pred EEEEECCCCCeEEEecCCC
Q 012699 432 TTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg 450 (458)
..+.|+.+|..++-.+.|.
T Consensus 406 ~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred eeEEecCCCcEEEEEcCCc
Confidence 9999999999999999885
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1e-18 Score=156.44 Aligned_cols=251 Identities=10% Similarity=0.155 Sum_probs=163.6
Q ss_pred CCCeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWNVDAK 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~ 224 (458)
.+....++++|++++|+.++ .++.|.+|+++...................++|+ ++++++++++ .++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCC
Confidence 34566889999999987664 5788999999732211111122233456789999 5666666554 5889999999743
Q ss_pred c-eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-----EeecCCCCCcEEE
Q 012699 225 R-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-----VLPLGEDPPAITS 298 (458)
Q Consensus 225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-----~~~~~~~~~~i~~ 298 (458)
. .............+..++++|+++.++++.... +.|.+||+.+...+. ...... ......
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~------------~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~ 179 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE------------DRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRH 179 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC------------CEEEEEEECCCCcccccCCCceecCC-CCCCce
Confidence 2 111111111113467788999999887766543 599999997633221 111111 234578
Q ss_pred EEEccCCCEEEEEec-CCeEEEEeCCC--Cc--eeeeeeCC------CCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699 299 LCFNHNGKILAASAV-DGMIHMFDMSA--GL--QITGWPAH------DSAISSILFGPDETSIFSLGS-DGKIIEWSLQN 366 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~-dg~i~v~d~~~--~~--~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 366 (458)
++|+|++++++++.. ++.|.+|++.. ++ .+..+..+ ......+.++|++++++++.. ++.|.+|++..
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 999999999988876 89999999973 22 23333221 112346889999999998854 78999999976
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG 417 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~ 417 (458)
........... .....+..++++|+|++|+++.. +++|.+|+++.
T Consensus 260 ~~~~~~~~~~~------~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 260 DGSVLSFEGHQ------PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCeEEEeEEE------eccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 44222111100 01124567899999999998886 78999998853
No 178
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1e-19 Score=169.33 Aligned_cols=294 Identities=19% Similarity=0.305 Sum_probs=208.9
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~ 222 (458)
+...+-..+.|+|=...++++...-.|+|||.+.++........ .....|..+.+-. .+..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 44456677889998888999887789999999887765322221 2345688888752 355789999999999999742
Q ss_pred C-----CceeeeccCCCC-----CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 223 A-----KRVVCDLNTTDA-----FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 223 ~-----~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
. .+.+.....-.. .+.-.-+.|......+++++.-+ .|+|||.........+... .
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r-------------~IRIWDa~~E~~~~diP~~-s 1207 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR-------------SIRIWDAHKEQVVADIPYG-S 1207 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee-------------EEEEEecccceeEeecccC-C
Confidence 2 122222211110 01113356666666666666543 9999999987777777654 3
Q ss_pred CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCC--eEEEEEcCCCC-EEEEecCCCeEEEEecc
Q 012699 293 PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAG---LQITGWPAHDSA--ISSILFGPDET-SIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 293 ~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 365 (458)
...++++.-+- .|+.+++|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|- .|++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 45567665543 4789999999999999998864 347778889887 99999998665 49999999999999999
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC------CCCCcEEEEEECCC
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL------PHGAAITTVDWHPT 439 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~~~ 439 (458)
...... .......-...+..+++..+++...+|+|+. +.|.||++.+........ ...+.+.+++|||.
T Consensus 1288 ~~~~e~----~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKET----FLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred cCcccc----cceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecch
Confidence 741110 0011111111335899999999999999999 999999998764322111 23467899999999
Q ss_pred CCeEEEecCCCcEEEEeC
Q 012699 440 LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 440 ~~~l~s~~~dg~v~iw~l 457 (458)
-.+||+|+.|.+|.||..
T Consensus 1363 ~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1363 RLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred hHhhhhccCCceEEEeec
Confidence 999999999999999974
No 179
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.5e-20 Score=152.72 Aligned_cols=249 Identities=15% Similarity=0.199 Sum_probs=187.5
Q ss_pred CCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 146 HTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 146 h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
|...-..++|+-+ ..++|.++.-|.|+|.|+.+++... ....|+..|..+.++|.+.+++++++.|..|++|++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI 165 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI 165 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--ceeccCccchhhhcCCCCCcEEEEecCCceEEEEec
Confidence 5666667777653 4578999999999999999887754 466789999999999999999999999999999999
Q ss_pred CCCceeeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE--------------
Q 012699 222 DAKRVVCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-------------- 286 (458)
Q Consensus 222 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-------------- 286 (458)
++..++..+..- .|...|.++.|++++..+++++.|. .+++|++...+....
T Consensus 166 ~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-------------slk~W~l~~~~f~~~lE~s~~~~~~~t~~ 232 (385)
T KOG1034|consen 166 QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-------------SLKLWRLNVKEFKNKLELSITYSPNKTTR 232 (385)
T ss_pred cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-------------eEEEEecChhHHhhhhhhhcccCCCCccC
Confidence 999999887653 3557899999999999999999995 999999974221111
Q ss_pred -----------e-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cc-------------eeeeeeCCCCCeEE
Q 012699 287 -----------L-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GL-------------QITGWPAHDSAISS 340 (458)
Q Consensus 287 -----------~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~-------------~~~~~~~~~~~v~~ 340 (458)
+ +...|...|-|+.|- |.++++=+-++.|..|..-. .+ .+..+.-....|+-
T Consensus 233 pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 233 PFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred cCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 0 112234445555554 56888888888999998721 11 12333344445665
Q ss_pred EE--EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 341 IL--FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 341 ~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
+. |.|-+++||.|...|.+.+||+++...+... . .........|...+||.||.+|+..+.|+.|.-||.-
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t----t-l~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT----T-LTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc----e-EEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 55 4567789999999999999999987654211 1 1112345678999999999999999999999999853
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.8e-18 Score=160.77 Aligned_cols=289 Identities=23% Similarity=0.444 Sum_probs=222.9
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccccccCC-CceEEEEE-ecCCCeEEEEEcC-CCcEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNATIYCG-TEIMSLEW-ECKSDRLLLIGTA-DGGIK 217 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~-~~v~~~~~-~~~~~~~l~~~~~-dg~i~ 217 (458)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... ... ...... ..+..+.+ .+.....++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK--SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE--EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 456899999999999999999999999999999988775 221 111111 35666666 5333325555444 99999
Q ss_pred EEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 218 AWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 218 ~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
+|+... ......+..+. ..+..+.++|++..++.++. + +.+++|+.........+. .|...
T Consensus 138 ~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~~~~~ 200 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLD-------------GTIKLWDLRTGKPLSTLA--GHTDP 200 (466)
T ss_pred EEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCC-------------CceEEEEcCCCceEEeec--cCCCc
Confidence 999998 66666666555 67889999999998887764 4 599999999877777664 47788
Q ss_pred EEEEEEccCCC-EEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 296 ITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 296 i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
+.+++|+|++. .+++++.|+.|++||...+..+. .+..|.... ...|+|++..+++++.|+.+++|++.........
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 279 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEE
Confidence 99999999998 55555899999999998787777 688888875 4489999989999999999999999976552211
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEe-cCCC
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTG-SADH 450 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~-~~dg 450 (458)
. ..+...+..+.|+|++..+++++.++.+.+|+........... .|...+..+.|.+++..++.+ ..|+
T Consensus 280 ~--------~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 280 L--------SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred E--------ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence 1 2457789999999999999888888889999888776555554 788889999994332455555 6889
Q ss_pred cEEEEeCC
Q 012699 451 SVQVMSLS 458 (458)
Q Consensus 451 ~v~iw~l~ 458 (458)
.+++|++.
T Consensus 352 ~~~~~~~~ 359 (466)
T COG2319 352 TIRLWDLR 359 (466)
T ss_pred cEEeeecC
Confidence 99999863
No 181
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=151.02 Aligned_cols=310 Identities=12% Similarity=0.142 Sum_probs=210.1
Q ss_pred CCCcCCCcceeccCCCeeeeeeeeeeccC-----CCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCC
Q 012699 118 LYTENGRDAQGEEDFPEVKVDFLETFLGH-----TSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCG 191 (458)
Q Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 191 (458)
.|||+|+++++.... .+.++...+++-| -+.|..+.|..|..+++.+ ..|+.|.+|++...+... ......
T Consensus 15 ~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--kIdeg~ 91 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--KIDEGQ 91 (447)
T ss_pred eECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE--EeccCC
Confidence 478999999988776 3333444444444 3568889999988776554 678899999998766543 233456
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.++.+++|+|++..+|.+...+-.|.+|.+.+.+....-... ..+..++|+|+|++.+..+..+.. .
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK---~~~kg~~f~~dg~f~ai~sRrDCk----------d 158 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPK---TNVKGYAFHPDGQFCAILSRRDCK----------D 158 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccc---cCceeEEECCCCceeeeeecccHH----------H
Confidence 788999999665578888888999999999987765432222 346889999999998887764310 0
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS 349 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (458)
.+.+...+.......+..+. -..+.+.|+|||..|++=.. +-.|+.|. -.-.+..++|+|.+++
T Consensus 159 yv~i~~c~~W~ll~~f~~dT--~DltgieWsPdg~~laVwd~~Leykv~aYe------------~~lG~k~v~wsP~~qf 224 (447)
T KOG4497|consen 159 YVQISSCKAWILLKEFKLDT--IDLTGIEWSPDGNWLAVWDNVLEYKVYAYE------------RGLGLKFVEWSPCNQF 224 (447)
T ss_pred HHHHHhhHHHHHHHhcCCCc--ccccCceECCCCcEEEEecchhhheeeeee------------eccceeEEEeccccce
Confidence 22333333344444444332 34688999999998876322 11122221 1235778999999999
Q ss_pred EEEecCCCeEEEEeccCCCe---------------------------------------------------------eEE
Q 012699 350 IFSLGSDGKIIEWSLQNQGQ---------------------------------------------------------VLW 372 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~---------------------------------------------------------~~~ 372 (458)
|+.|+.|+.+|+.+--+-+. +..
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 99999999998866432000 000
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
................+..++||+|..++++-..+ +.+.+||+...+ +....-...+|....|+|....|+.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-hhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence 00011111122234567779999999999987765 689999998763 344445667999999999999888887777
Q ss_pred cEEEEeCC
Q 012699 451 SVQVMSLS 458 (458)
Q Consensus 451 ~v~iw~l~ 458 (458)
.+++|..+
T Consensus 384 rLY~W~ps 391 (447)
T KOG4497|consen 384 RLYFWAPS 391 (447)
T ss_pred eEEEEcCC
Confidence 89999753
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.86 E-value=6.3e-19 Score=160.97 Aligned_cols=267 Identities=16% Similarity=0.193 Sum_probs=193.4
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--ee--eccCCCCCCceeeeee
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VC--DLNTTDAFPSVLDLKC 244 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~--~~~~~~~~~~v~~~~~ 244 (458)
+.+.+|++..... .........+|.++.|+|.+..+++.|+.+|.|.+||++.+.. .. ....+.|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~--Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT--PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCC--ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4789999987632 3345667889999999999999999999999999999998765 22 2333445578888888
Q ss_pred cCCCCe--EEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecC---------CCCCcEEEEEEcc-CCCEEEEE
Q 012699 245 SPVEPI--FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLG---------EDPPAITSLCFNH-NGKILAAS 311 (458)
Q Consensus 245 ~~~~~~--~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~---------~~~~~i~~~~~~~-~~~~l~~~ 311 (458)
..+..- +++++.| |.|..|+++...... ..... .....+++++|.+ +...+++|
T Consensus 300 ~~~~~~~~f~s~ssD-------------G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG 366 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSD-------------GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG 366 (555)
T ss_pred eccCCCCceEEEecC-------------CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE
Confidence 876555 8888877 699999887543311 11110 1224688999988 45679999
Q ss_pred ecCCeEEEEeCCCC--------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 312 AVDGMIHMFDMSAG--------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 312 ~~dg~i~v~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
+.+|.|..-+.... +....+..|.++|+++.++|=+..++..+.|.+++||.......+ .....
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P--------l~~~~ 438 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP--------LLSLD 438 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc--------chhhh
Confidence 99999887443221 223456678999999999996655444444999999998732222 22223
Q ss_pred CCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCC--cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 384 SSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHA--SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+...+++++|||-. ..++++..+|.+.+||+.... +......+....+.+.|++.|+.|+.|...|.+.+|+++
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 344559999999976 456677779999999996543 233333446677888999999999999999999999983
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=2.3e-19 Score=143.33 Aligned_cols=260 Identities=18% Similarity=0.247 Sum_probs=186.0
Q ss_pred eeeccCCCCeEEEEeCCC-CCEEEEEeCC-------CcEEEEecCCCCCCCcc--------ccccCCCceEEEEEecCCC
Q 012699 141 ETFLGHTSPISCCRFSSS-GNNIASASVD-------GTVRIWTYDSSTPASRN--------ATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~d-------g~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~ 204 (458)
+.|..|.+.|..++-+|- .+.|+|+..+ ..+.||.+......... ....+-+.|.|+.|.| ++
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns 135 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NS 135 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CC
Confidence 467789999999999994 5566766542 24779998654332110 0112335899999995 67
Q ss_pred eEEEEEcCCCcEEEEEcCCCce-eeeccCCC---CCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699 205 RLLLIGTADGGIKAWNVDAKRV-VCDLNTTD---AFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
..+++-. |..|.+|+++.+.. ...+.... +....++-+|+| ++..+++.+. +++..||+
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d--------------~tl~~~D~ 200 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD--------------STLQFWDL 200 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC--------------CcEEEEEc
Confidence 7777665 78999999987765 33332221 123456677887 5667776665 49999999
Q ss_pred CCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcC-CCCEEEEecC
Q 012699 279 KTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGP-DETSIFSLGS 355 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 355 (458)
++.+....+. ..|...+..+.|+|+.+ +|++++.||.|++||.+. ..+++.+.+|...|+++.|+| ...++++++.
T Consensus 201 RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 201 RTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred cchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 9988887775 56778899999999865 678899999999999987 567899999999999999999 4457889999
Q ss_pred CCeEEEEeccCCCe---eEE-----------------eecCCcccCCCCCCCceeEEEEccCCCE-EEEEeCCccEEEEE
Q 012699 356 DGKIIEWSLQNQGQ---VLW-----------------TRNCSRFCDPESSKSCRHEMALDVNGRR-LLVTSGSVRAPIYQ 414 (458)
Q Consensus 356 dg~i~iwd~~~~~~---~~~-----------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~~~~i~i~~ 414 (458)
|..|.+|....-.. +.. ......+.....|...|++++||.-..+ +|+-+.||++.|-.
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 99999998753210 000 0000112234568889999999986655 56678899998876
Q ss_pred ccC
Q 012699 415 VRG 417 (458)
Q Consensus 415 ~~~ 417 (458)
+..
T Consensus 360 V~r 362 (370)
T KOG1007|consen 360 VPR 362 (370)
T ss_pred CCh
Confidence 643
No 184
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=2.2e-20 Score=147.18 Aligned_cols=300 Identities=15% Similarity=0.160 Sum_probs=184.9
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+..|+.|...|+++.| ..++. |.+|..-|.+++|.+++.+....+.....-+ +.-...-.+.-+.+-+.|..+.
T Consensus 7 ~fvLRp~~~~v~s~~f-qa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~----it~lq~~p~d~l~tqgRd~~L~ 80 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLF-QANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLF----ITNLQSIPNDSLDTQGRDPLLI 80 (323)
T ss_pred eeEeccccchheehhh-ccchh-hhcccccceEEEEEeecCccchhhhhhccce----eeceeecCCcchhhcCCCceEE
Confidence 4578899999999999 66665 8899999999999999987664433110000 0000011225567777888888
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
+|++.......... -..+..-|. ...+.........+.+.|+.. + |- +.+=|.
T Consensus 81 lw~ia~s~~i~i~S-i~~nslgFC-------------------rfSl~~~~k~~eqll~yp~rg-----s-de-~h~~D~ 133 (323)
T KOG0322|consen 81 LWTIAYSAFISIHS-IVVNSLGFC-------------------RFSLVKKPKNSEQLLEYPSRG-----S-DE-THKQDG 133 (323)
T ss_pred EEEccCcceEEEee-eeccccccc-------------------cceeccCCCcchhheecCCcc-----c-ch-hhhhcc
Confidence 88886622100000 000001110 001111111111222222110 0 00 111111
Q ss_pred CCCCC--CCccccccCCCceEEEEEecCCC--eEEEEEcCCCcEEEEEcCCCceeeeccC--------CCCCCceeeeee
Q 012699 177 DSSTP--ASRNATIYCGTEIMSLEWECKSD--RLLLIGTADGGIKAWNVDAKRVVCDLNT--------TDAFPSVLDLKC 244 (458)
Q Consensus 177 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~~~v~~~~~ 244 (458)
..... +.........+.+.+..+....+ -++++|.++|.+.+||+.++..+..+.. ..+..++.++.+
T Consensus 134 g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy 213 (323)
T KOG0322|consen 134 GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY 213 (323)
T ss_pred CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee
Confidence 11110 00111122234566666543333 4677788899999999999854433322 223367888888
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--ce--eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--KA--MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 320 (458)
.+....-++++.+. .+..|.+... .. ...+++ ....+..+.+-||++.+|+++.|+.|+||
T Consensus 214 as~~~rGisgga~d-------------kl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVy 278 (323)
T KOG0322|consen 214 ASSCDRGISGGADD-------------KLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVY 278 (323)
T ss_pred chhhcCCcCCCccc-------------cceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEE
Confidence 87766666666654 7777776542 22 222222 22458889999999999999999999999
Q ss_pred eCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 321 DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 321 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
..++.+++..++.|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999999999999986
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=3.6e-19 Score=142.37 Aligned_cols=248 Identities=18% Similarity=0.257 Sum_probs=178.2
Q ss_pred CCCceEEEEEe--cCCCeEEEEEcC----CCcEEEEEc--CCCceeeeccCCCCCCceeeeeecCCCC----eEEEeecc
Q 012699 190 CGTEIMSLEWE--CKSDRLLLIGTA----DGGIKAWNV--DAKRVVCDLNTTDAFPSVLDLKCSPVEP----IFVSAAAS 257 (458)
Q Consensus 190 ~~~~v~~~~~~--~~~~~~l~~~~~----dg~i~~wd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~ 257 (458)
..-++.++.|+ |....+|+.|+. .+.|.+..+ ++++.+..-. .++.-+++.+.|.|+.. -+++.+.|
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~D 121 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSSD 121 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhcccC
Confidence 34456778886 234567787764 345555544 3455444333 34556899999999874 23333333
Q ss_pred cCCCCcceeeccceeEEEEECCC--CceeEE-----eecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCce--
Q 012699 258 RRYGSSNIYSWGFASLTVWNMKT--WKAMTV-----LPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQ-- 327 (458)
Q Consensus 258 ~~~~~~~~~~~~~g~i~i~d~~~--~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~-- 327 (458)
.+++|.+.. .+.... -+...+..++++..|+. +.+++.+.+-|-+..|||++++..
T Consensus 122 --------------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~ 187 (364)
T KOG0290|consen 122 --------------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT 187 (364)
T ss_pred --------------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence 999998873 222111 11234566899999987 677899999999999999998633
Q ss_pred -eeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEE
Q 012699 328 -ITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVT 404 (458)
Q Consensus 328 -~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~ 404 (458)
..++-+|..+|..++|...+ ..|++.+.||.+|+||++.........+ ......+...++|+++. +++|+-
T Consensus 188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE------~p~~~~pLlRLswnkqDpnymATf 261 (364)
T KOG0290|consen 188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE------DPSPSTPLLRLSWNKQDPNYMATF 261 (364)
T ss_pred eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec------CCCCCCcceeeccCcCCchHHhhh
Confidence 66778999999999999855 4789999999999999997644332211 11225567889998854 667765
Q ss_pred eC-CccEEEEEccCCCc-ccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699 405 SG-SVRAPIYQVRGHAS-GMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 405 ~~-~~~i~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~ 458 (458)
.. ...|.|.|++.... +.++.+|.+.|+.++|.|... .|+|||+|..+.|||+.
T Consensus 262 ~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 262 AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 44 46799999987654 456669999999999999876 89999999999999984
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.4e-19 Score=149.29 Aligned_cols=201 Identities=19% Similarity=0.328 Sum_probs=153.8
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
.+++|+++|..|++++.||++|||++.+..... ....|+.+|.++.|+ +++..|++-+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--EEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--hhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 789999999999999999999999987765543 455688999999999 889999999999 9999999999776665
Q ss_pred cCCCCCCceeeeeecCCC---CeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCCcEEEEEEccC
Q 012699 231 NTTDAFPSVLDLKCSPVE---PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~~i~~~~~~~~ 304 (458)
...........+.|..++ .+.+.+..... +.|+.||+..++. .+..+.-.....|++++.+++
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~-----------~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPG-----------GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCC-----------CceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 543333445667777766 33333322211 4666666543332 111111122346999999999
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
|++++.|+.||.|.|++..+.+.++.. +.|...|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999887776654 48999999999999999999999999998888764
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.8e-20 Score=158.11 Aligned_cols=308 Identities=13% Similarity=0.177 Sum_probs=223.9
Q ss_pred eeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCC
Q 012699 136 KVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADG 214 (458)
Q Consensus 136 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 214 (458)
++.....|.+|.+.|..+.|+..|..|++|+.|..|.+||.......... ...|...|....|-|. +.+.+++++.||
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc-ccccccchhhhhccCCCCCcCceeccccC
Confidence 33566788999999999999999999999999999999999887765332 2345556666677764 456789999999
Q ss_pred cEEEEEcC-CCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 215 GIKAWNVD-AKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 215 ~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
.+++=.+. ++.+..+.....+.+++..++..|+.. .|.+++.| +.+.-+|++...+...+....+
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD-------------~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGED-------------AVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccc-------------cceeeeeeccCCccceeeeecc
Confidence 99988765 444444555556668899999999877 45666666 5888899988776655543222
Q ss_pred -CC---cEEEEEEccCCC-EEEEEecCCeEEEEeCCCCce------eeeeeC------CCCCeEEEEEcCCCCEEEEecC
Q 012699 293 -PP---AITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQ------ITGWPA------HDSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 293 -~~---~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~------~~~~~~------~~~~v~~~~~~~~~~~l~~~~~ 355 (458)
.. ....++..|... .+++|+.|..+++||.+.-.. +..+-. ..-.|++++|+.++.-|.++-.
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 22 467888998654 889999999999999865211 222222 2346899999987777777777
Q ss_pred CCeEEEEeccCCCe--eEEe----ecCCcccCCCCCCCceeEEE-EccCCCEEEEEeCCccEEEEEccCCCcccccCCCC
Q 012699 356 DGKIIEWSLQNQGQ--VLWT----RNCSRFCDPESSKSCRHEMA-LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG 428 (458)
Q Consensus 356 dg~i~iwd~~~~~~--~~~~----~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~ 428 (458)
|-.|+++.-.-+.- +... ...+...........|..+. |-|...|+++|+.-|.|.||+-.+.+.+..+.+-.
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr 436 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR 436 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc
Confidence 88899994332111 1100 00111112222233466665 46889999999999999999999998777777766
Q ss_pred CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 429 AAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..|+|+.=||--++||++|-|.-|+||..
T Consensus 437 ~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 437 HVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred ceEeccCCCCCCchhhccCCccceeeecC
Confidence 69999999999999999999999999964
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=4.7e-19 Score=148.08 Aligned_cols=316 Identities=14% Similarity=0.154 Sum_probs=212.4
Q ss_pred CcceeeeeeccCCCc-eeeeeecCcceEEeccccccccc---cceeeeecc--CCceeeeeCCccceeEeeccCCCcccc
Q 012699 24 SETIKYANIGQTKNS-TLASGVNEESLLLSTNSSEACAT---TATHMGSAE--MGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 24 ~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
..+|..+.| ..+.. .|+||+.|..++||.++.....+ .+...+.-. ....-++.++++++.|++|+.+|.+-+
T Consensus 13 ~~pv~s~df-q~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDF-QKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEe-ccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 456888999 65555 99999999999999998876654 222211111 112234788889999999999999999
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
|....... +-.+. ......-.....+.+++|...|..++|+|++.++++++.|.++++||+.
T Consensus 92 Wk~~~~~~-------------~~~d~-----e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~ 153 (434)
T KOG1009|consen 92 WKQGDVRI-------------FDADT-----EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH 153 (434)
T ss_pred EEecCcCC-------------ccccc-----hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence 99653110 00000 0000111123566788999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc--------CCCCC-------------
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN--------TTDAF------------- 236 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------~~~~~------------- 236 (458)
.+.... ....|.+-+..++|. +-++++++-+.|...+.+.+...+..+... .....
T Consensus 154 ~G~l~~--~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 154 AGQLLA--ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred cceeEe--eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 987754 345677889999999 667888888888877777766544332222 01111
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEEEEEEcc------------
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAITSLCFNH------------ 303 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~~~~~~~------------ 303 (458)
.--..++|+|+|.++++...--..+.... .+..++|+-... ++...+ +....+...+.++|
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~----~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~ 304 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVF----RNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEK 304 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCcee----eceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccc
Confidence 12345789999999988765432222211 124555554321 222222 22223344444443
Q ss_pred ------CCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 304 ------NGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 304 ------~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
.+..+++++.+ .|++||.++..++... .-|-..|+.++|++||..|+..|.||...+--++..+
T Consensus 305 ~~~~lpyrlvfaiAt~~-svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 305 FLFVLPYRLVFAIATKN-SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cccccccceEEEEeecc-eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 33356666654 7999999988777654 4688899999999999999999999998887776543
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=2.2e-19 Score=149.53 Aligned_cols=211 Identities=16% Similarity=0.255 Sum_probs=165.1
Q ss_pred eeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCC-----ccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 142 TFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPAS-----RNATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
.+.||+++|..++|+| +...|||||+|.+|.||.+..+.... ......|...|--++|+|...+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4569999999999999 56789999999999999987654432 12344577789999999989999999999999
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
|.+||+.+++.+.++. |...|+++.|+.+|..++++..|+ .|++||.++++.+..-..+.. ..
T Consensus 156 v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDK-------------kvRv~dpr~~~~v~e~~~heG-~k 218 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDK-------------KVRVIDPRRGTVVSEGVAHEG-AK 218 (472)
T ss_pred EEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccc-------------eeEEEcCCCCcEeeecccccC-CC
Confidence 9999999999888877 447899999999999999999996 999999999999887632221 23
Q ss_pred EEEEEEccCCCEEEEEe---cCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCC
Q 012699 296 ITSLCFNHNGKILAASA---VDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQG 368 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~ 368 (458)
-..+.|-.++..+.+|. .+..+-+||..+-+. ...+. ..+.|.---|.||.+.++.++. |+.|+.|.+.+..
T Consensus 219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 45566777888655554 367899999766332 23333 2445666667888888776665 9999999998765
Q ss_pred ee
Q 012699 369 QV 370 (458)
Q Consensus 369 ~~ 370 (458)
..
T Consensus 298 P~ 299 (472)
T KOG0303|consen 298 PF 299 (472)
T ss_pred ce
Confidence 43
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=1.3e-20 Score=170.97 Aligned_cols=291 Identities=19% Similarity=0.242 Sum_probs=210.8
Q ss_pred HHHHHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-ccceeeeeccCCceeeeeCCccceeEee
Q 012699 10 LEEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-TTATHMGSAEMGQTWASSRPALSRFATN 88 (458)
Q Consensus 10 ~~~~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 88 (458)
+-++-+.+++|.||.+.|.|++| ...|.++++|++|..++||..++..+. ..-.|.+-..+ .+.+....++++
T Consensus 176 mvqkmk~ikrLlgH~naVyca~f-Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditd-----lavs~~n~~iaa 249 (1113)
T KOG0644|consen 176 MVQKMKNIKRLLGHRNAVYCAIF-DRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITD-----LAVSSNNTMIAA 249 (1113)
T ss_pred HHHHHHHHHHHHhhhhheeeeee-ccccceEeecCccceeeeeeccchhhhccCCCCccccch-----hccchhhhhhhh
Confidence 44555678899999999999999 999999999999999999999988776 23334433344 556667889999
Q ss_pred ccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCC
Q 012699 89 MSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVD 168 (458)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 168 (458)
+|.|..|++|.+.... ++..++||++.|++++|+|-. +.+.|
T Consensus 250 aS~D~vIrvWrl~~~~----------------------------------pvsvLrghtgavtaiafsP~~----sss~d 291 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGA----------------------------------PVSVLRGHTGAVTAIAFSPRA----SSSDD 291 (1113)
T ss_pred cccCceEEEEecCCCc----------------------------------hHHHHhccccceeeeccCccc----cCCCC
Confidence 9999999999986544 667789999999999999954 67889
Q ss_pred CcEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699 169 GTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 169 g~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (458)
|++++||.+-...+ ..........-+.++.|. .++..+++++.|+.-..|.+.... |..
T Consensus 292 gt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l~------------------~~~ 352 (1113)
T KOG0644|consen 292 GTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRFLTGSRDGEARNHEFEQLA------------------WRS 352 (1113)
T ss_pred CceEeccccccccccCCCCCCcccccceeeeecc-ccccccccccCCcccccchhhHhh------------------hhc
Confidence 99999998721111 111122223446666666 777889999999988877654221 111
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCC
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAG 325 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~ 325 (458)
+.-.+++...+. ....+.+.....+.+|++.++....... +|...+..+.++|- .+...+++.||...|||+-.+
T Consensus 353 ~~lif~t~ssd~--~~~~~~ar~~~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 353 NLLIFVTRSSDL--SSIVVTARNDHRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred cceEEEeccccc--cccceeeeeeeEeeeeecccchhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecccC
Confidence 111111111110 0111111122488999999988777654 67778899999995 445568899999999999999
Q ss_pred ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 326 LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 326 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
.+++.+......+..-+||++|..++....-|.++|......
T Consensus 429 ~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 429 IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred CcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 888776655667778899999999998888888888876543
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=4.9e-19 Score=141.63 Aligned_cols=242 Identities=15% Similarity=0.293 Sum_probs=177.8
Q ss_pred cCCCCeEEEEeCCCC-----CEEEEEeCCCcEEEEecCCCCCCC-------ccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 145 GHTSPISCCRFSSSG-----NNIASASVDGTVRIWTYDSSTPAS-------RNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
.|.-+++.+.|.|+. .+|||++ ..+|+|.+...+... .........++++..|+.-+.+++.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688899999999976 3566654 479999987432111 11223345789999999888999999999
Q ss_pred CCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699 213 DGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP 288 (458)
Q Consensus 213 dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~ 288 (458)
|-+..+||++++.. ..++-.|+ ..|.+++|...+. .+++.+.| |.+++||++..+....+.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHD--KEV~DIaf~~~s~~~FASvgaD-------------GSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHD--KEVYDIAFLKGSRDVFASVGAD-------------GSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecC--cceeEEEeccCccceEEEecCC-------------CcEEEEEecccccceEEe
Confidence 99999999998732 33344444 7899999998665 67778877 699999999877655553
Q ss_pred cCCC-CCcEEEEEEccC-CCEEEEEecC-CeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEe
Q 012699 289 LGED-PPAITSLCFNHN-GKILAASAVD-GMIHMFDMSA-GLQITGWPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 289 ~~~~-~~~i~~~~~~~~-~~~l~~~~~d-g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd 363 (458)
-... ..+...++|+++ -+++|+-..| ..|.+.|++. ..++.++++|.+.|+.++|.|. ...|.++++|..+.+||
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 2333 457888999985 4566664443 5799999987 5678999999999999999994 56899999999999999
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCC
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGS 407 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~ 407 (458)
+....... .....-.-.....|+.+.|+| .+..++.+.++
T Consensus 317 l~q~~~~~----~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 317 LQQMPREN----GEDPILAYTAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred cccccccC----CCCchhhhhccceeeeeeecccCCCEEEEEecC
Confidence 98653310 000011112567799999996 55677766554
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=5.7e-20 Score=159.89 Aligned_cols=265 Identities=14% Similarity=0.163 Sum_probs=187.4
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC------CCCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
.++..|.+.|+.+.|.|....|++++.||++++|++.... .........|.++|.|++.. .++..+++|+.||
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDG 366 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCc
Confidence 3778899999999999999999999999999999993211 12223445678999999998 8899999999999
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
+|+.|++....- |+.. +|.. ..... +.+|..
T Consensus 367 ~I~~w~~p~n~d-------------------p~ds--------------------------~dp~--vl~~~--l~Ghtd 397 (577)
T KOG0642|consen 367 TIRCWNLPPNQD-------------------PDDS--------------------------YDPS--VLSGT--LLGHTD 397 (577)
T ss_pred eeeeeccCCCCC-------------------cccc--------------------------cCcc--hhccc--eecccc
Confidence 999998762221 0000 0000 00011 347888
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeE
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
.+..+++|+....|++++.||+++.|+.....+ .++... .+...++.+-... ...++...-+.-.++++.......
T Consensus 398 avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~ 476 (577)
T KOG0642|consen 398 AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLL 476 (577)
T ss_pred ceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhhee
Confidence 899999999888999999999999999876655 333322 2233455553322 122222222223333333322222
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
.... ...........+..+.+.|.+.+.+++..++.|+++|..++..+.....|...++++++.|+|.+|++++.||.
T Consensus 477 ~~~s--~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 477 IFES--SASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred eccc--cCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCce
Confidence 1110 11111223345778899999999999999999999999999988888899999999999999999999999999
Q ss_pred EEEEeCC
Q 012699 452 VQVMSLS 458 (458)
Q Consensus 452 v~iw~l~ 458 (458)
|++|.++
T Consensus 555 v~l~kld 561 (577)
T KOG0642|consen 555 VRLWKLD 561 (577)
T ss_pred eehhhcc
Confidence 9999873
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.4e-18 Score=135.53 Aligned_cols=255 Identities=18% Similarity=0.267 Sum_probs=174.7
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
..|..-+++|.+++|+.|..+|+|.+..+.+... ........|..+++.++|+ ..+|++++ ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEe
Confidence 3466778999999999999999999998754211 1112224577899999997 44566655 5999998
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
..+..... . +.=++|.+......... .-..|+++
T Consensus 87 ~W~E~~es------~------------------------------------~~K~lwe~~~P~~~~~~----evPeINam 120 (325)
T KOG0649|consen 87 EWNEEEES------L------------------------------------ATKRLWEVKIPMQVDAV----EVPEINAM 120 (325)
T ss_pred eehhhhhh------c------------------------------------cchhhhhhcCccccCcc----cCCcccee
Confidence 76543211 0 12334443322221111 11358999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
...|..+-++.++.|+.++-||+++|+..+.+++|++.|.+++--.....+++|+.||++++||.++.+...........
T Consensus 121 ~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 121 WLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred EeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 99998777777778999999999999999999999999999998555558999999999999999998776543322221
Q ss_pred cCCC-CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 380 CDPE-SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 380 ~~~~-~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.... ....+|.+++. +..+|+.|++ ..+.+|.++..+. ...++-.++|..+.|-.| .+++++.-..|.-|.++
T Consensus 201 ~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~-t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 201 NLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSES-TCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred hhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCc-eEEEecccceeEeeeecc--eEEEeccccceeeeeec
Confidence 1111 23344555554 4457765544 5589999998754 344455677888888654 57777777778777653
No 194
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=5.4e-17 Score=131.80 Aligned_cols=240 Identities=20% Similarity=0.275 Sum_probs=172.1
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEcCC
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNVDA 223 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~ 223 (458)
..+++|+.|..-++.|..+| .+||+.+--+..........+-.+..+-|- .+-+.++|+.+ ..+.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 44599999988888877665 899998754332222222222233333332 23333444443 4799999767
Q ss_pred CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeEEeecCCCCCcEEEEEEc
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
.+++.++... .+|.++.+.++. ++..-. +.|.+|... +.+.+..+.....+....+++-.
T Consensus 85 ~~~i~el~f~---~~I~~V~l~r~r--iVvvl~--------------~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 85 ERCIIELSFN---SEIKAVKLRRDR--IVVVLE--------------NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CcEEEEEEec---cceeeEEEcCCe--EEEEec--------------CeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 7777766655 578899888764 333333 399999987 56666666655555566666555
Q ss_pred cCCCEEEE-EecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-EEEEeccCCCeeEEeecCCc
Q 012699 303 HNGKILAA-SAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGK-IIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 303 ~~~~~l~~-~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~ 378 (458)
.+..+||. |..-|.|.|-|+...+. ...+.+|.+.|.|++.+.+|..+||+|..|+ |||||..++......++.
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-- 223 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-- 223 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC--
Confidence 45556665 44569999999987554 4678999999999999999999999999998 899999998776654432
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
.....+.+++|||++.+||+++..|+++|+.+...
T Consensus 224 -----~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 224 -----VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -----CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 34567999999999999999999999999998763
No 195
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=152.00 Aligned_cols=274 Identities=14% Similarity=0.193 Sum_probs=182.6
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCce---eeeeCCccceeEeeccCCC
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQT---WASSRPALSRFATNMSGND 93 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 93 (458)
+++-..|...|.|+.+ +.+...+.+++++..+.-|+.......-....-.+.|..-. .........+-++.++.||
T Consensus 7 ~~~k~r~~e~vc~v~w-~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 7 ICKKNRNSEKVCCVDW-SSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred hhhccccceeEEeecc-cccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCc
Confidence 4455578888988888 88888887777666666666544322200000111111000 0112222344555566666
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 173 (458)
.+.+-+- .| +..+....|.+.|.|-.|+|||.-|+|+++||.|++
T Consensus 86 kf~il~k---------------------~~--------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKi 130 (737)
T KOG1524|consen 86 RFVILNK---------------------SA--------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKI 130 (737)
T ss_pred eEEEecc---------------------cc--------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEE
Confidence 6555331 11 134456789999999999999999999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 253 (458)
|.-... . +........+|+|++|.|.....+++.+. .+.+=.+ ..
T Consensus 131 WSrsGM-L--RStl~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL---------~~--------------------- 175 (737)
T KOG1524|consen 131 WSRSGM-L--RSTVVQNEESIRCARWAPNSNSIVFCQGG--HISIKPL---------AA--------------------- 175 (737)
T ss_pred Eeccch-H--HHHHhhcCceeEEEEECCCCCceEEecCC--eEEEeec---------cc---------------------
Confidence 985432 2 22344567789999999766666665443 2222111 10
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
....++...|.+-|.++.|++..+.+++|++|-..++||.. |..+..-..
T Consensus 176 -----------------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~ 225 (737)
T KOG1524|consen 176 -----------------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA 225 (737)
T ss_pred -----------------------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh
Confidence 01112234677889999999999999999999999999965 788888889
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
|+.+|++++|+|+ +.++.+|.. ++++ .+ ...+.|..++|||||..++.|+..|.+.+-
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~n-t~R~---~~-----------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSYN-TARF---SS-----------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred hccceeeeeeccc-cceeeeeee-eeee---cC-----------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999999 566666543 4441 11 234568999999999999999999876543
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-17 Score=137.80 Aligned_cols=292 Identities=16% Similarity=0.221 Sum_probs=193.6
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR- 225 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~- 225 (458)
...+..++|++.-..+|++..|-.|++|+-....+ ..........|.+++|-|.....|+.|+..| |.+|.....-
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p--t~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP--TKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC--ceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccc
Confidence 34577899998666688999999999999766332 2223334568999999988888899998865 8999865321
Q ss_pred -----------eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 226 -----------VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 226 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
....++...+ .+|+++.|.+|+..+++++.+. ..|.+||..++..+.... ...+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs------------ssi~iWdpdtg~~~pL~~--~glg 239 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS------------SSIMIWDPDTGQKIPLIP--KGLG 239 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc------------ceEEEEcCCCCCcccccc--cCCC
Confidence 1112222333 6899999999999999998776 499999999988877653 2345
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe-
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT- 373 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~- 373 (458)
.++-+.||||+.+|++++-|+..++|+.........+.-..+.|...+|+|+|++|+.... |.-++|.+.-.++....
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 6889999999999999999999999966543333333344568999999999987654432 23445554322211100
Q ss_pred -----------e---cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--------cEEEEEccCCCcccccC-C--CC
Q 012699 374 -----------R---NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--------RAPIYQVRGHASGMRTL-P--HG 428 (458)
Q Consensus 374 -----------~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------~i~i~~~~~~~~~~~~~-~--h~ 428 (458)
. .+.......-..+.+.+++|+|.|.+||+....+ .|.+||........... + ..
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 0 0111111122356789999999999999987654 35566665442222111 1 11
Q ss_pred CcEEEEEECC---CCCeEEEecCCCcEEEEeC
Q 012699 429 AAITTVDWHP---TLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 429 ~~v~~~~~~~---~~~~l~s~~~dg~v~iw~l 457 (458)
....-++|+| ++++|..+=..|.+.-|.+
T Consensus 399 e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 399 EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred CCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 2255566666 3446665555677766654
No 197
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.3e-19 Score=152.55 Aligned_cols=214 Identities=16% Similarity=0.263 Sum_probs=152.1
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGI 216 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i 216 (458)
...+.|.||++-|+|+.|+.+|.+|++|+.|-.+.|||.-..++.. .....|...|.++.|.|. ++.++++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-sI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-SISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceee-eeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 4667889999999999999999999999999999999998666553 334567789999999974 55688899999999
Q ss_pred EEEEcCCCce--------eeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeE--
Q 012699 217 KAWNVDAKRV--------VCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-- 285 (458)
Q Consensus 217 ~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-- 285 (458)
+++|+...+. ....-...+...|..++..|++ ..+.+++.| |+++-+|++....-.
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasED-------------GtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASED-------------GTIRQYDIREPHVCNPD 186 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCC-------------cceeeecccCCccCCcc
Confidence 9999985221 1111112233567888888988 567777777 699999998632111
Q ss_pred ------EeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCC--------c----------eeeee-eCCC----
Q 012699 286 ------VLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAG--------L----------QITGW-PAHD---- 335 (458)
Q Consensus 286 ------~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~--------~----------~~~~~-~~~~---- 335 (458)
........-...|+.++|. ..+|++|+.|-..++||.+.. . ++..+ ++|-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 0011112234678999995 568999999999999994321 1 12211 1222
Q ss_pred -------CCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 336 -------SAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 336 -------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
..++-+.|+|+|.-|+..-....|+++|+.
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 125667899999876665555578999886
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=2e-18 Score=149.40 Aligned_cols=264 Identities=16% Similarity=0.229 Sum_probs=186.3
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceE-EEEEec------CCCeEEEEEcCCCcEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM-SLEWEC------KSDRLLLIGTADGGIK 217 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~------~~~~~l~~~~~dg~i~ 217 (458)
.|...|.|+.|+.+...+.+++.+..+.-||+...... .... ...-+. .+-.-+ .....++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 46777889999988766666554444444454433221 1000 011111 110000 1235788889999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+.+- .++....+..|. +.+.+-.|+|+|.-+++++.| |.|++|.-.. ....++. ....+|.
T Consensus 89 il~k-~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~GED-------------G~iKiWSrsG-MLRStl~--Q~~~~v~ 149 (737)
T KOG1524|consen 89 ILNK-SARVERSISAHA--AAISSGRWSPDGAGLLTAGED-------------GVIKIWSRSG-MLRSTVV--QNEESIR 149 (737)
T ss_pred Eecc-cchhhhhhhhhh--hhhhhcccCCCCceeeeecCC-------------ceEEEEeccc-hHHHHHh--hcCceeE
Confidence 8873 455555555554 789999999999999999999 6999998543 3333332 2345799
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
|++|.|+...++.+ ..+.+.+=.+.....+-.+++|.+-|.++.|+|..+.+++|+.|-..++||-...
T Consensus 150 c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---------- 218 (737)
T KOG1524|consen 150 CARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---------- 218 (737)
T ss_pred EEEECCCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------
Confidence 99999987766654 3567888788777778889999999999999999999999999999999998643
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.+.....+..+|++++|.|+ +.+++++.+ +.++ + .+..+.|..++|||||..++.|...|.+.+
T Consensus 219 ~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~---~--------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 219 NLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF---S--------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ccccCChhccceeeeeeccc-cceeeeeee-eeee---c--------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44455678899999999999 666655543 2331 1 124578999999999999999988887754
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.9e-18 Score=159.79 Aligned_cols=302 Identities=12% Similarity=0.160 Sum_probs=208.7
Q ss_pred eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCC-ceeeeeCCccceeEeeccCCCcccccccccccC
Q 012699 27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMG-QTWASSRPALSRFATNMSGNDSISPSKLEFEDV 105 (458)
Q Consensus 27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~ 105 (458)
-..+.| .+-...++++.....+.+||.+.++....+..-++.... ..+-.-...+..++.+++.||.|+||+-.....
T Consensus 1067 pk~~~~-hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1067 PKTLKF-HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred Cceeee-cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 445667 888889999998899999999998876444322211110 112334445788999999999999999554332
Q ss_pred CcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc
Q 012699 106 GAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN 185 (458)
Q Consensus 106 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 185 (458)
+..+.+..+.... + .+.+-.+.=.-+.|.....+|+++|.-..|+|||........ .
T Consensus 1146 ~~~eLVTaw~~Ls----~------------------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~-d 1202 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLS----D------------------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA-D 1202 (1387)
T ss_pred CCceeEEeecccc----c------------------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe-e
Confidence 3334443332210 0 011111111346787766667666667899999998765442 2
Q ss_pred ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCC
Q 012699 186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYG 261 (458)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~ 261 (458)
........++++.-+-..++.+++|..||.|++||.+... .+...+.+....+|..+.+.+.|-. +++++.+
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~---- 1278 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD---- 1278 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC----
Confidence 2333455677777665678999999999999999987543 4555566665556899999887764 8888887
Q ss_pred CcceeeccceeEEEEECCCCceeEEeecCCCC--C-cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC----
Q 012699 262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--P-AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH---- 334 (458)
Q Consensus 262 ~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~-~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---- 334 (458)
|.|++||++.......+....|. + ..+++..++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1279 ---------G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1279 ---------GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred ---------CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 69999999985333222222221 2 4899999999999999988 999999986 4444444322
Q ss_pred ---CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 335 ---DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 335 ---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
.+.+.|++|+|..-++|+|+.|.+|.+|...+.
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 347799999999989999999999999988754
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=9.6e-18 Score=136.17 Aligned_cols=212 Identities=17% Similarity=0.228 Sum_probs=164.4
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
+.--..+|+|.+|++|+..+|.+.....|.||...... .........|...|+.++|. +..+.|++++.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCcccccc
Confidence 33446899999999999999999999999999988777 33333445677889999999 67778999999999999998
Q ss_pred -CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEE
Q 012699 222 -DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITS 298 (458)
Q Consensus 222 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~ 298 (458)
..++...++.........+++.|+|.++.+++++..+ .|.+|-.+....- ....-......|++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar-------------~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR-------------LISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc-------------EEEEEEEecccceehhhhhCCccccceee
Confidence 5555444444434446799999999999999999875 7777765542221 11112345567999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCC-----C-------------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMS-----A-------------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~-----~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
+.|+|++-+|++|+.|+..+||..- . |+.+..+....+.+..+.|+|+|..|+-.+.|..+.
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 9999999999999999999999742 1 223334445567899999999999999999999999
Q ss_pred EEeccCCC
Q 012699 361 EWSLQNQG 368 (458)
Q Consensus 361 iwd~~~~~ 368 (458)
+-|.....
T Consensus 232 ~~da~~p~ 239 (361)
T KOG1523|consen 232 FVDAAGPS 239 (361)
T ss_pred EeecCCCc
Confidence 99987654
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.6e-17 Score=128.57 Aligned_cols=236 Identities=17% Similarity=0.235 Sum_probs=170.5
Q ss_pred cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699 82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN 161 (458)
Q Consensus 82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 161 (458)
..++++.++.+|.|.+..+........ -|.|+. .+-..++|.++|+.++|.. .+
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa-----------~~~gk~-------------~iv~eqahdgpiy~~~f~d--~~ 74 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSA-----------EPPGKL-------------KIVPEQAHDGPIYYLAFHD--DF 74 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhcccc-----------CCCCCc-------------ceeeccccCCCeeeeeeeh--hh
Confidence 367889999999999988866432111 122222 2334589999999999983 47
Q ss_pred EEEEeCCCcEEEEecCCCCCC------Ccccccc-----CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 162 IASASVDGTVRIWTYDSSTPA------SRNATIY-----CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 162 l~s~~~dg~v~iwd~~~~~~~------~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
|++|+ ||.|+-|........ ....... .-.+|+++...|..+. ++.++.|+.++-||+++|+...++
T Consensus 75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence 77776 599999987543220 0011111 1246888888855555 555558999999999999999999
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC--------CcEEEEEEc
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--------PAITSLCFN 302 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--------~~i~~~~~~ 302 (458)
+.|. ..+.++.-......+++++.| |++++||+++++.+..+....++ ..|.+++.
T Consensus 153 rGHt--DYvH~vv~R~~~~qilsG~ED-------------GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~- 216 (325)
T KOG0649|consen 153 RGHT--DYVHSVVGRNANGQILSGAED-------------GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV- 216 (325)
T ss_pred cCCc--ceeeeeeecccCcceeecCCC-------------ccEEEEeccccceeEEeccccChhhcCcccCceeEEEec-
Confidence 9887 568888887777788899888 69999999999999887654432 24555554
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+..++++|+ ...+.+|.++..++...++. ..++..+.|..+ .+++++..+.+.-|.+..
T Consensus 217 -~edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 217 -NEDWLVCGG-GPKLSLWHLRSSESTCVFPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -cCceEEecC-CCceeEEeccCCCceEEEec-ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 456888876 45799999999988888764 566888888644 778888888899998863
No 202
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1e-18 Score=154.32 Aligned_cols=241 Identities=20% Similarity=0.319 Sum_probs=174.0
Q ss_pred CCCEEEE--EeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699 158 SGNNIAS--ASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT 233 (458)
Q Consensus 158 ~~~~l~s--~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 233 (458)
+..++|. ++..|.|-||++.....+. .......+..|+.+.|+|-+.+.|++++.||.|++|.+..+.......
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~-- 667 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM-- 667 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC--
Confidence 3445443 3557899999997654332 122344567899999999999999999999999999988765432211
Q ss_pred CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEe
Q 012699 234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NGKILAASA 312 (458)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~ 312 (458)
.+...+ ..|...|+++.|+| -...|++++
T Consensus 668 ------------------------------------------------tPe~~l--t~h~eKI~slRfHPLAadvLa~as 697 (1012)
T KOG1445|consen 668 ------------------------------------------------TPEKIL--TIHGEKITSLRFHPLAADVLAVAS 697 (1012)
T ss_pred ------------------------------------------------Ccceee--ecccceEEEEEecchhhhHhhhhh
Confidence 111222 24667799999999 356899999
Q ss_pred cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699 313 VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 313 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
.|-+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|+-++..+++..... .....-..+
T Consensus 698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-------pvgtRgARi 770 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-------PVGTRGARI 770 (1012)
T ss_pred ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-------CccCcceeE
Confidence 9999999999999999999999999999999999999999999999999999987665543221 122334568
Q ss_pred EEccCCCEEEEEeCC----ccEEEEEccCCCc-ccccC--CCCCcEEEEEECCCCC-eEEEecCCCcEEEEeC
Q 012699 393 ALDVNGRRLLVTSGS----VRAPIYQVRGHAS-GMRTL--PHGAAITTVDWHPTLP-MFLTGSADHSVQVMSL 457 (458)
Q Consensus 393 ~~s~~g~~l~~~~~~----~~i~i~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l 457 (458)
.|..||+++++.+-| .+|.+|+..+... ..... .-.-.+.--.+.+|.. +|++|-.|..|.+|.+
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 899999999887765 4688888765431 11111 1111122223455655 6778888999999875
No 203
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=9.4e-19 Score=149.70 Aligned_cols=306 Identities=11% Similarity=0.119 Sum_probs=214.9
Q ss_pred HHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccc--cceeeeeccCCceeeeeCCccceeEeecc
Q 012699 13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACAT--TATHMGSAEMGQTWASSRPALSRFATNMS 90 (458)
Q Consensus 13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (458)
.-.....|..|...|+.+.| ...|..|+||+.|..+.+||...+.... .-.|....-+.+.+ -+ .+..-+++++
T Consensus 131 r~~l~~kL~~H~GcVntV~F-N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFi--P~-s~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHF-NQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFI--PF-SGDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeee-cccCceeeccCccceEEeehhhccCcccccccccccchhhhhcc--CC-CCCcCceecc
Confidence 33345688899999999999 9999999999999999999998776552 22222222221111 11 1344566777
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCC
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDG 169 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg 169 (458)
.||.+++-.+.... ..+..+.+..|.++|.-++.-|+.. -|.+++.|+
T Consensus 207 ~dgqvr~s~i~~t~-------------------------------~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~ 255 (559)
T KOG1334|consen 207 RDGQVRVSEILETG-------------------------------YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDA 255 (559)
T ss_pred ccCceeeeeecccc-------------------------------ceecceecccccCccceeeecCCCCCccccccccc
Confidence 77777765443211 0112345567999999999999754 489999999
Q ss_pred cEEEEecCCCCCCCccccccCC-C---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee------eeccCC----CC
Q 012699 170 TVRIWTYDSSTPASRNATIYCG-T---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV------CDLNTT----DA 235 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~-~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------~~~~~~----~~ 235 (458)
.+.-.|+....+.......... . ....++.+|.+...+++++.|..+++||.+.-... ..+..+ ..
T Consensus 256 ~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 256 VVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred ceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 9999999877654433322222 2 46788889888889999999999999997642211 111111 22
Q ss_pred CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc------------eeEEeecCCC--CCcEEEEEE
Q 012699 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK------------AMTVLPLGED--PPAITSLCF 301 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~------------~~~~~~~~~~--~~~i~~~~~ 301 (458)
...|++++|+.++.-+++.-.+. .|+++...-+. ..+. .+.+| ...|..+.|
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe-------------~IYLF~~~~~~G~~p~~~s~~~~~~k~-vYKGHrN~~TVKgVNF 401 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDE-------------DIYLFNKSMGDGSEPDPSSPREQYVKR-VYKGHRNSRTVKGVNF 401 (559)
T ss_pred cccceeEEecCCccceeeeeccc-------------ceEEeccccccCCCCCCCcchhhccch-hhcccccccccceeee
Confidence 34689999997776666555553 78888433221 1111 12344 334666654
Q ss_pred -ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 302 -NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 302 -~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
-|...|+++|+.-|.|.+|+-.+++.++.+.+-..-|+||.-+|.-..||+++-|.-|+||--...
T Consensus 402 fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 402 FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 577889999999999999999999999988887789999999999999999999999999987543
No 204
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=3.5e-18 Score=142.44 Aligned_cols=228 Identities=16% Similarity=0.294 Sum_probs=173.0
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee-------eeccCCCCCCceeeeeecCCCC-eEEEeeccc
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV-------CDLNTTDAFPSVLDLKCSPVEP-IFVSAAASR 258 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~ 258 (458)
...|.++|..++|+|.+++.+++|+.|.+|.+|++..+... ..+..|. ..|--++|+|... .|++++.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~--rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ--RRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc--eeEEEEeecccchhhHhhccCC-
Confidence 45677899999999999999999999999999998765443 3333333 6788999999765 66677776
Q ss_pred CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC-C
Q 012699 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS-A 337 (458)
Q Consensus 259 ~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~ 337 (458)
..|.+|++.+++....+. |+..|.++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+ .
T Consensus 154 ------------n~v~iWnv~tgeali~l~---hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 154 ------------NTVSIWNVGTGEALITLD---HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK 218 (472)
T ss_pred ------------ceEEEEeccCCceeeecC---CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence 499999999999887764 889999999999999999999999999999999999988888876 3
Q ss_pred eEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEE
Q 012699 338 ISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIY 413 (458)
Q Consensus 338 v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~ 413 (458)
-..+.|-.++..+-||- .+..+.+||-.+...+...... .....|.---|.||.+.++.++ +|+.|+.|
T Consensus 219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYy 291 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYF 291 (472)
T ss_pred cceeEEeccCceeeeccccccccceeccCcccccCcceeEEe-------ccCCceEEeeecCCCCEEEEEecCCcceEEE
Confidence 44566777888554443 3778999999887665433221 2344566667889998887655 58999999
Q ss_pred EccCCCcccccC---CCCCcEEEEEECCC
Q 012699 414 QVRGHASGMRTL---PHGAAITTVDWHPT 439 (458)
Q Consensus 414 ~~~~~~~~~~~~---~h~~~v~~~~~~~~ 439 (458)
.+....+...++ ....+=..+.|-|.
T Consensus 292 Eit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 292 EITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EecCCCceeEEecccccCCcccccccccc
Confidence 998765433332 22334445555553
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=1.4e-16 Score=132.07 Aligned_cols=247 Identities=16% Similarity=0.265 Sum_probs=178.3
Q ss_pred CeEEEEeCCCCCEEEEEeCC--CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 149 PISCCRFSSSGNNIASASVD--GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~d--g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
.|.-+-|+.. ++|..+.+ +.+++.+++....+. ......+|.++.++ .++|+++-.+ .|.|||+++.+.
T Consensus 48 ~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC---e~~fpt~IL~VrmN---r~RLvV~Lee-~IyIydI~~Mkl 118 (391)
T KOG2110|consen 48 SIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC---EIFFPTSILAVRMN---RKRLVVCLEE-SIYIYDIKDMKL 118 (391)
T ss_pred EEEEeecccc--eeEEEecCCCceEEEEEcccCceEE---EEecCCceEEEEEc---cceEEEEEcc-cEEEEeccccee
Confidence 3555666644 55555443 458888887665543 34457889999986 4556665554 499999999999
Q ss_pred eeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 227 VCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 227 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
+.++... .+...+.++..++.+.+++.-+... .|.|.+||..+-++...+. .|.+.+.+++|+++|
T Consensus 119 LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-----------~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 119 LHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-----------SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDG 185 (391)
T ss_pred ehhhhccCCCccceEeeccCCCCceEEecCCCC-----------CceEEEEEcccceeeeEEE--ecCCceeEEEECCCC
Confidence 9998876 4445577888888777887754432 2899999999988888875 889999999999999
Q ss_pred CEEEEEecCCe-EEEEeCCCCceeeeeeCCC--CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe---------
Q 012699 306 KILAASAVDGM-IHMFDMSAGLQITGWPAHD--SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT--------- 373 (458)
Q Consensus 306 ~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------- 373 (458)
.+||+++..|+ ||||.+.+|+.+..|+... ..|.+++|+|++.+|++.|..++|.+|.+.........
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~ 265 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWF 265 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCccc
Confidence 99999999986 6899999999999887543 36789999999999999999999999999753211000
Q ss_pred e------------------cCC-cccCCC-CCCCceeEEEEc--cCCCEEEEEeCCccEEEEEccC
Q 012699 374 R------------------NCS-RFCDPE-SSKSCRHEMALD--VNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 374 ~------------------~~~-~~~~~~-~~~~~v~~~~~s--~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
. ... .+.... .....-..+.+. +..+++.+++.||.++.|.+.-
T Consensus 266 ~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 266 GKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred chhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 0 000 000000 011111223444 4778999999999999998865
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=2.2e-17 Score=139.11 Aligned_cols=198 Identities=16% Similarity=0.174 Sum_probs=151.1
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 319 (458)
..+++++++..+++++.| |.+|+|+..+....... ..|...|.++.|+|||++|++-+.| ..+|
T Consensus 148 k~vaf~~~gs~latgg~d-------------g~lRv~~~Ps~~t~l~e--~~~~~eV~DL~FS~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-------------GTLRVWEWPSMLTILEE--IAHHAEVKDLDFSPDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeeecccc-------------ceEEEEecCcchhhhhh--HhhcCccccceeCCCCcEEEEecCC-ceEE
Confidence 578999999999999998 69999997765555443 3567889999999999999999999 8999
Q ss_pred EeCCCCceeeeeeCC--CCCeEEEEEcCCC-----CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699 320 FDMSAGLQITGWPAH--DSAISSILFGPDE-----TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 320 ~d~~~~~~~~~~~~~--~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
|+.+++..+...... ......+.|+.++ ..++....-+.|+.||+........ .+..........+.++
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~----l~~~~~~~~~~siSsl 287 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNF----LRLRKKIKRFKSISSL 287 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccc----cchhhhhhccCcceeE
Confidence 999999777665422 3356677888776 2333344466677877764322100 0111222334569999
Q ss_pred EEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 393 ALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 393 ~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+.|++|++++.|+.+|.|-|++..+.+...... .|...|+.+.|+||.+++++.+.|....|-.|
T Consensus 288 ~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999999999999999998876554444 69999999999999999999998888877654
No 207
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=2.3e-17 Score=150.90 Aligned_cols=252 Identities=14% Similarity=0.246 Sum_probs=177.2
Q ss_pred CCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCC--Cc--cccccCCCceEEEEEecCCC--eEEEEEcCCCcEEE
Q 012699 146 HTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPA--SR--NATIYCGTEIMSLEWECKSD--RLLLIGTADGGIKA 218 (458)
Q Consensus 146 h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~--~~--~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~~ 218 (458)
-...|+|+.|+| +..+++.|..+|.|.+||+..+... .. .....|..++..+.|.. +. .-+++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEee
Confidence 357899999999 5677888999999999999877652 11 22334667899999973 33 44899999999999
Q ss_pred EEcCCCceeee---c--cC-----CCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeE--
Q 012699 219 WNVDAKRVVCD---L--NT-----TDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-- 285 (458)
Q Consensus 219 wd~~~~~~~~~---~--~~-----~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-- 285 (458)
|+++.-..... . .. ......++.+.|.+.... ++.|+.. |.|.--+....+...
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~-------------G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE-------------GKVYKGCRKGYTPAPEV 386 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCC-------------cEEEEEeccCCcccccc
Confidence 98765332111 0 11 112245788999887764 4455544 566653333222222
Q ss_pred ----EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeE
Q 012699 286 ----VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKI 359 (458)
Q Consensus 286 ----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 359 (458)
......|.++|.++.++|=+..++..+.|-++++|... ...++..+..+...+++++|||.. ..|+++..||.+
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 11234567889999999966555544459999999988 677888888888889999999965 467788889999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
.+||+...... ............+.+.|++.|+.|++|...|.+++|++...
T Consensus 467 ~iWDLl~~~~~-------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 467 DIWDLLQDDEE-------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ehhhhhccccC-------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99999864321 11111122445677889999999999999999999999643
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-17 Score=155.65 Aligned_cols=361 Identities=14% Similarity=0.065 Sum_probs=224.3
Q ss_pred HHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-c-cceeeeeccC-CceeeeeCCccceeEeec
Q 012699 13 KEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-T-TATHMGSAEM-GQTWASSRPALSRFATNM 89 (458)
Q Consensus 13 ~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 89 (458)
+...+.+|..|...|+.++..++++.+++|||.||++++|+...-.-. + .-....|++. ++...+.+-..+..+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 445678899999999999996777799999999999999998654333 1 2224567744 445566777788899999
Q ss_pred cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--ccCCCCeEEEEeCC-CCC-EEEEE
Q 012699 90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LGHTSPISCCRFSS-SGN-NIASA 165 (458)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~~-~l~s~ 165 (458)
+.||.+.+.+++......... ...+.. ..-...|..-+|.. ++. .|+.+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~---------------------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVA---------------------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred cCCCeEEEEEcccccccccee---------------------------eeeecccccCCCceEEeecccccccceeEEEE
Confidence 999999998886632110000 011111 11112233333433 233 67778
Q ss_pred eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..-+.|..||+..............++-|++++.+ +.++.++.|+..|.+.+||++-+.++.....+.+ .++..+..+
T Consensus 1170 T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id-p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1170 TDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID-PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLC 1247 (1431)
T ss_pred EeccceEEecchhhhhHHhhhcCccccceeEEEec-CCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEee
Confidence 88899999999877665555555567889999999 6778999999999999999999998888776655 577777766
Q ss_pred CCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-C----------------CCCcEEEEEEccCC
Q 012699 246 PVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-E----------------DPPAITSLCFNHNG 305 (458)
Q Consensus 246 ~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~----------------~~~~i~~~~~~~~~ 305 (458)
|-.+ ..++++... .+.|.+|++.++.....+-.. + +.-......+...+
T Consensus 1248 ~~~~~~S~~vs~~~~~-----------~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1248 PTYPQESVSVSAGSSS-----------NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred ccCCCCceEEEecccC-----------CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence 6443 444444411 169999999988766655432 1 00111222233345
Q ss_pred CEEEEEecCCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCCCeE-EEEeccCCCe----eEEeecCCcc
Q 012699 306 KILAASAVDGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKI-IEWSLQNQGQ----VLWTRNCSRF 379 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~~~----~~~~~~~~~~ 379 (458)
..+++|+.|..|+.||....+.. ....+..........+.+ ..++.++.--.. .......+.. ..........
T Consensus 1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 68899999999999998765433 223333323333333222 123333221000 0111110000 0011111122
Q ss_pred cCCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEE
Q 012699 380 CDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~ 414 (458)
.....|...|+.+++-.. ..+|++++.||.|+||.
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 233457778888887654 46788888999999993
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-17 Score=144.79 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=129.2
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccce--eeeeccCCceeeeeCC--ccceeEeeccCC
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTAT--HMGSAEMGQTWASSRP--ALSRFATNMSGN 92 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 92 (458)
-+.|.||...|+|+++ +.||.+|+|||+|-.+.|||.-..+..+.|. |.+. .+.+.|- ...+.+++|..|
T Consensus 43 E~eL~GH~GCVN~LeW-n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaN-----IFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEW-NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTAN-----IFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhccccceecceee-cCCCCEEeecCCcceEEeecchhcceeeeeecccccc-----eeEEeeeccCCCeEEEeccCc
Confidence 3578999999999999 9999999999999999999998665553332 2221 2223333 367899999999
Q ss_pred CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcE
Q 012699 93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTV 171 (458)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v 171 (458)
..|+++++.....+... .+. .+..+.+..|...|..++-.|++ ..+.++++||++
T Consensus 117 k~i~lfdl~~~~~~~~d----------------------~~~--~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMD----------------------HGM--EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred ceEEEEecccccccccc----------------------cCc--cchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 99999998763321111 010 11445567899999999999988 678999999999
Q ss_pred EEEecCCCCCCCcc------cccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 172 RIWTYDSSTPASRN------ATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 172 ~iwd~~~~~~~~~~------~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
+-+|++....-... .... .--+..++..+|.+..+|++|+.|-..++||.
T Consensus 173 rQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 173 RQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 99999763321110 0111 11356789999999999999999999999994
No 210
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.9e-17 Score=134.52 Aligned_cols=197 Identities=11% Similarity=0.259 Sum_probs=156.0
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
..++++..+|.|++||..+++.+..++.+. ..+..+.|.. ....+.+++.| |.|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssD-------------G~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSD-------------GTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccC-------------CeEEEEEeecch
Confidence 568889999999999999999998888776 4566666665 44566677776 699999999988
Q ss_pred eeEEeecCCCC-CcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCce-eeee-eCCCCCeEEEEEcC-CCCEEEEec
Q 012699 283 AMTVLPLGEDP-PAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQ-ITGW-PAHDSAISSILFGP-DETSIFSLG 354 (458)
Q Consensus 283 ~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~ 354 (458)
....+....++ .+..+++.+-.++.+++|+. +-.|.+||.+..+. +..+ ..|...|+++.|+| +.++|++||
T Consensus 106 e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS 185 (376)
T KOG1188|consen 106 ESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS 185 (376)
T ss_pred hhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec
Confidence 88877776665 56778888777888888864 66899999998665 5444 57999999999999 667999999
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCccc
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGM 422 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~ 422 (458)
.||.|.+||+....+ ...+.....+...|..+.|..++ +.|.+-+...+..+|+++.+....
T Consensus 186 vDGLvnlfD~~~d~E------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 186 VDGLVNLFDTKKDNE------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred ccceEEeeecCCCcc------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 999999999986522 12333444567789999999888 457778888999999998776443
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.7e-17 Score=150.07 Aligned_cols=235 Identities=13% Similarity=0.116 Sum_probs=157.4
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeeeee
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC 244 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 244 (458)
+..|.+||.+..... ....+...+....|+ ++++.|+..+.+ ..|++||+.+++........ .....++|
T Consensus 183 ~~~i~i~d~dg~~~~---~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~---g~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQF---IVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR---GHNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCce---EeccCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC---CccCceeE
Confidence 468999998765532 223455678999999 567767766543 36999999887643322211 22346899
Q ss_pred cCCCCeEEEeecccCCCCcceeeccce--eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEe
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFA--SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFD 321 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d 321 (458)
+|+++.++.+.... | .|.+||+.+++... +. .+...+....|+|||+.|+..+ .+|...+|+
T Consensus 256 SPDG~~La~~~~~~------------g~~~Iy~~d~~~~~~~~-lt--~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~ 320 (429)
T PRK01742 256 SPDGSRLAFASSKD------------GVLNIYVMGANGGTPSQ-LT--SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYR 320 (429)
T ss_pred CCCCCEEEEEEecC------------CcEEEEEEECCCCCeEe-ec--cCCCCcCCEEECCCCCEEEEEECCCCCceEEE
Confidence 99999888765322 2 45566777665433 32 3445678899999999877655 567788887
Q ss_pred CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 322 MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 322 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+... .....+ .+.. ....|+|+|++|+..+.++ +.+||+.++....... . .....+.|+|||++
T Consensus 321 ~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~---~--------~~~~~~~~sPdG~~ 385 (429)
T PRK01742 321 MSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS---T--------FLDESPSISPNGIM 385 (429)
T ss_pred EECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC---C--------CCCCCceECCCCCE
Confidence 6532 222222 3333 4578999999998887765 5569998764322110 0 01245789999999
Q ss_pred EEEEeCCccEEEEEcc--CCCcccccCCCCCcEEEEEECCC
Q 012699 401 LLVTSGSVRAPIYQVR--GHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 401 l~~~~~~~~i~i~~~~--~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
|+.++.++...+|.+. .+.....+..|.+.+..++|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999998888877753 34445556678888999999985
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=2.5e-18 Score=146.28 Aligned_cols=265 Identities=14% Similarity=0.186 Sum_probs=204.1
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.-+.+.++.+|++|+.|+.-|.+..+|+.+..... .+.-...|.++.|. .+.++++++-. ..+.+||-. |..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~v~Etv~Dv~~L-Hneq~~AVAQK-~y~yvYD~~-GtElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EINVMETVRDVTFL-HNEQFFAVAQK-KYVYVYDNN-GTELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeee---eeehhhhhhhhhhh-cchHHHHhhhh-ceEEEecCC-CcEEe
Confidence 34578999999999999999999999999887654 33345678889998 67777777654 589999954 55556
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
.++.+ ..|..+.|.|..-+|++++.. |.++--|+.+|+.+..+.. ..+.+..++-+|-+..+
T Consensus 205 Clk~~---~~v~rLeFLPyHfLL~~~~~~-------------G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 205 CLKRH---IRVARLEFLPYHFLLVAASEA-------------GFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYNAVI 266 (545)
T ss_pred ehhhc---CchhhhcccchhheeeecccC-------------CceEEEeechhhhhHHHHc--cCCccchhhcCCccceE
Confidence 56655 578999999999888888877 6999999999999888753 33568888999988899
Q ss_pred EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 309 AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
-+|...|+|.+|.....+++..+..|.++|.+|++.++|.|++|.+.|..++|||+++..++..... ...
T Consensus 267 h~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------p~~ 336 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----------PHP 336 (545)
T ss_pred EEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----------CCC
Confidence 9999999999999999999999999999999999999999999999999999999998765443221 233
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCC---CcccccCCC--CCcEEEEEECCCCCeEEEecCC
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGH---ASGMRTLPH--GAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~---~~~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d 449 (458)
...+++|..| +++.+....+.||.-... .....+..| .++|.++.|.|-...|-.|-.-
T Consensus 337 a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~ 400 (545)
T KOG1272|consen 337 ASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAG 400 (545)
T ss_pred cccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccC
Confidence 4557777655 333444455888853222 111222233 3689999999976666554433
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=9.8e-19 Score=158.96 Aligned_cols=249 Identities=16% Similarity=0.280 Sum_probs=187.1
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+.++.+.||...|+|+.|...|.++++|+.|..++||..++..+.. ....|.+.|+.++.+ .+..++++++.|..|+
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--s~rGhs~ditdlavs-~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--SCRGHSGDITDLAVS-SNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--cCCCCccccchhccc-hhhhhhhhcccCceEE
Confidence 5667788999999999999999999999999999999988887654 456788899999988 7778899999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE------------
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT------------ 285 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~------------ 285 (458)
+|.+..+.++..+..+. +.|++++|+|-. +.+.+ |++++||.+- .+..
T Consensus 258 vWrl~~~~pvsvLrght--gavtaiafsP~~----sss~d-------------gt~~~wd~r~-~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHT--GAVTAIAFSPRA----SSSDD-------------GTCRIWDARL-EPRIYVPRPLKFTEKD 317 (1113)
T ss_pred EEecCCCchHHHHhccc--cceeeeccCccc----cCCCC-------------CceEeccccc-cccccCCCCCCccccc
Confidence 99999999998888776 789999999976 34444 6999999871 1110
Q ss_pred ---EeecC--------------CCCCcEEEEEEccCCCEEEE-----------EecCCeEEEEeCCCCceeeeeeCCCCC
Q 012699 286 ---VLPLG--------------EDPPAITSLCFNHNGKILAA-----------SAVDGMIHMFDMSAGLQITGWPAHDSA 337 (458)
Q Consensus 286 ---~~~~~--------------~~~~~i~~~~~~~~~~~l~~-----------~~~dg~i~v~d~~~~~~~~~~~~~~~~ 337 (458)
.+.+. .....+.+++|..++-.+++ +-.+-.+.+|++.++...+.+.+|...
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 00000 00001222223222222222 333456788999999999999999999
Q ss_pred eEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 338 ISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 338 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
+..+.++| +.+...+++.||...|||+-.+-...... .+ ...+..-+||+||+.++....-|.++|....
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--------~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--------IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--------cc-cceeeccccCCCCceEecCCCCCceEEeccC
Confidence 99999999 55566789999999999998764433221 11 4456667899999999988888999988765
Q ss_pred CC
Q 012699 417 GH 418 (458)
Q Consensus 417 ~~ 418 (458)
..
T Consensus 469 qs 470 (1113)
T KOG0644|consen 469 QS 470 (1113)
T ss_pred CC
Confidence 44
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=5.7e-16 Score=126.02 Aligned_cols=242 Identities=14% Similarity=0.184 Sum_probs=179.3
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc---eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR---VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
..+|++.+|+ .+...++.+..+..+.||.....+ ..+++..|+ ..++.+.|.|..+.+++++.|+
T Consensus 10 ~~pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~dr--------- 77 (361)
T KOG1523|consen 10 LEPITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSHDR--------- 77 (361)
T ss_pred cCceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccCCC---------
Confidence 4689999999 888899999999999999988776 344454444 7899999999999999999997
Q ss_pred ccceeEEEEEC-CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEE
Q 012699 268 WGFASLTVWNM-KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSIL 342 (458)
Q Consensus 268 ~~~g~i~i~d~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~ 342 (458)
.-++|.. ..++-.+++.+-.+....+++.|+|.++.|++|+.-..|.||-++...- ...-+.+...|.++.
T Consensus 78 ----nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 78 ----NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred ----CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 8899988 5555555555556778899999999999999999999999988764321 112245678899999
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCe------eEEeecC---CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQ------VLWTRNC---SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
|+|++-+|++|+.|+..+++..--... .-+..+. ..........+.+..+.|+|+|..|+-.+.|..+.+-
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 999999999999999999997542110 0000000 0001112467789999999999999999999999999
Q ss_pred EccCCCccc-ccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 414 QVRGHASGM-RTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 414 ~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
|.....+.. ......-+..++.|-.+.. ++.++.|
T Consensus 234 da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 234 DAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred ecCCCchhccchhhccCCceeeEeecCCc-eeecCCC
Confidence 988775322 2222236777787765433 4444444
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.75 E-value=2.9e-15 Score=133.47 Aligned_cols=291 Identities=13% Similarity=0.137 Sum_probs=176.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIK 217 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~ 217 (458)
.+..+......-..+.|+|||+++++++.||.|.++|+.+.+... ....+.....++++ ++++++++++ ..+.+.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~---~i~~G~~~~~i~~s-~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA---TIKVGGNPRGIAVS-PDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---EEE-SSEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---EEecCCCcceEEEc-CCCCEEEEEecCCCcee
Confidence 444555443333457899999999999999999999999988553 44556677899999 6777777664 689999
Q ss_pred EEEcCCCceeeeccCCC-----CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 218 AWNVDAKRVVCDLNTTD-----AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
++|.++.+.+..+.... ..+++..+..+|..+.++..-.+. +.|.+.|....+....-... .
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~------------~~I~vVdy~d~~~~~~~~i~-~ 170 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT------------GEIWVVDYSDPKNLKVTTIK-V 170 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT------------TEEEEEETTTSSCEEEEEEE--
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC------------CeEEEEEeccccccceeeec-c
Confidence 99999999888776542 224677888889888777766654 58888898776544322221 2
Q ss_pred CCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeee----CCCCCeEEEEEcCC----------CCEEEEecCCC
Q 012699 293 PPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWP----AHDSAISSILFGPD----------ETSIFSLGSDG 357 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~----------~~~l~~~~~dg 357 (458)
........|+|++++++++ ..+..|-++|..+++.+..+. .|..+...+- +|. +...++.-...
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~p-hp~~g~vw~~~~~~~~~~~~ig~~ 249 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFP-HPGFGPVWATSGLGYFAIPLIGTD 249 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEE-ETTTEEEEEEEBSSSSEEEEEE--
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccccc-CCCcceEEeeccccceecccccCC
Confidence 2457789999999988765 456789999999887766553 2334444331 222 22221222222
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE----eCCccEEEEEccCCCcccccCC-CCCcEE
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT----SGSVRAPIYQVRGHASGMRTLP-HGAAIT 432 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~----~~~~~i~i~~~~~~~~~~~~~~-h~~~v~ 432 (458)
.+.+||..+.+.+.... .... ..-+..+|+++++.+. ...++|.++|.++.+....+.. -...+.
T Consensus 250 ~v~v~d~~~wkvv~~I~---------~~G~-glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 250 PVSVHDDYAWKVVKTIP---------TQGG-GLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp TTT-STTTBTSEEEEEE----------SSS-S--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ccccchhhcCeEEEEEE---------CCCC-cceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 44556666654443322 1122 2567889999999998 3458999999998855444432 223599
Q ss_pred EEEECCCCCeEEEec--CCCcEEEEeC
Q 012699 433 TVDWHPTLPMFLTGS--ADHSVQVMSL 457 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~--~dg~v~iw~l 457 (458)
.+.|+++|+.+..+. .++.|.|||-
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 999999999554433 3447999984
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=1.7e-16 Score=137.70 Aligned_cols=200 Identities=18% Similarity=0.280 Sum_probs=140.3
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD 234 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 234 (458)
|++--|+.|-.-|.|.+.|....+... ..........++++.|-|.+...++++-.+|.+.+||..... .
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~- 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------G- 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------c-
Confidence 455567777777888888765422111 011122347899999998888999999999999999873111 0
Q ss_pred CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
..-.+....+++..+.....-. ..+..++....+ ....|+..+|+|||++||+.+.|
T Consensus 255 --~t~p~~~~~k~~~~f~i~t~ks-------------------k~~rNPv~~w~~--~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 255 --ATAPSYQALKDGDQFAILTSKS-------------------KKTRNPVARWHI--GEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred --CCCCcccccCCCCeeEEeeeec-------------------cccCCccceeEe--ccccccceeEcCCCceEEEEecC
Confidence 0011112223343333222110 011123333322 23479999999999999999999
Q ss_pred CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
|.++|||..+.+.+..++.--+...|++|||||++|++|+.|..|.||.+...+.+. ..++|+.+|..++|
T Consensus 312 GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA---------RGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 312 GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA---------RGQGHKSWVSVVAF 382 (636)
T ss_pred ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE---------eccccccceeeEee
Confidence 999999999988888777777889999999999999999999999999998764433 34579999999999
Q ss_pred cc
Q 012699 395 DV 396 (458)
Q Consensus 395 s~ 396 (458)
+|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 98
No 217
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.6e-14 Score=119.06 Aligned_cols=278 Identities=13% Similarity=0.193 Sum_probs=192.2
Q ss_pred CCcEEEEecCCCCC-CCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCC--CceeeeccCCCCCCceee
Q 012699 168 DGTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDA--KRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 168 dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~--~~~~~~~~~~~~~~~v~~ 241 (458)
+.-|.+|++++... +...........++-++|+ ++.+.|+++.. +|.|..|.++. |+....-.......+...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y 93 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY 93 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence 46699999984432 2222334455778899999 67777777655 47788887775 554332222222234588
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCc----------EEEEEEccCCCEEEE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPA----------ITSLCFNHNGKILAA 310 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~ 310 (458)
+++++++++++++.-.. |.|.++-++. +..........|.+. +....+.|++++|++
T Consensus 94 vsvd~~g~~vf~AnY~~------------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 94 VSVDEDGRFVFVANYHS------------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred EEECCCCCEEEEEEccC------------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 99999999999988765 7999998865 443333222223333 788999999999988
Q ss_pred Eec-CCeEEEEeCCCCceeeeee---CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCC-CeeEEeecCCcccCCCC
Q 012699 311 SAV-DGMIHMFDMSAGLQITGWP---AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQ-GQVLWTRNCSRFCDPES 384 (458)
Q Consensus 311 ~~~-dg~i~v~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 384 (458)
... --.|.+|++..++....-+ .....-+.|.|+|++++.+...+ +++|.+|..... +..........+.....
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 754 2369999998775532211 33456789999999998887766 999999999875 34433334444444455
Q ss_pred CCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEecCC-CcEEEEeCC
Q 012699 385 SKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGSAD-HSVQVMSLS 458 (458)
Q Consensus 385 ~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iw~l~ 458 (458)
...+...+.++|||++|+++.. ...|.+|.+........+. .+....+.+.|+|++++|+++..| ..|.+|.++
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 6667888999999999998775 3678888887554333333 355568999999999998888765 468887653
No 218
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.2e-16 Score=144.56 Aligned_cols=214 Identities=13% Similarity=0.166 Sum_probs=147.5
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
+..|.+||.+.... ..+..+. ..+..+.|+|+++.++..+.+. +...|++||+.+++........++
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~--~~v~~p~wSPDG~~la~~s~~~----------~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSS--QPLMSPAWSPDGSKLAYVSFEN----------KKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCC--CccccceEcCCCCEEEEEEecC----------CCcEEEEEeCCCCceEEEecCCCc
Confidence 46899999876553 3333332 5689999999999998876532 113799999988765444333333
Q ss_pred CCcEEEEEEccCCCEEEEEe-cCCeEE--EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCC
Q 012699 293 PPAITSLCFNHNGKILAASA-VDGMIH--MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQG 368 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~-~dg~i~--v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 368 (458)
...++|+|||+.|+.+. .+|.+. +||+.+++ ...+..+...+....|+|||+.|+..+ .++...+|++....
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG 325 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34689999999888764 577655 45666554 455666777788999999999877555 57888899876432
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
..... . .+.. ....|+|||++|++++.++ +.+||+.++........+ ...+++|+|+|++|++++.
T Consensus 326 ~~~~~-----l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 326 GGASL-----V----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCeEE-----e----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence 21111 0 1111 3468999999999887754 667999876432211122 2356889999999999999
Q ss_pred CCcEEEEeC
Q 012699 449 DHSVQVMSL 457 (458)
Q Consensus 449 dg~v~iw~l 457 (458)
+|.+.+|.+
T Consensus 392 ~g~~~~l~~ 400 (429)
T PRK01742 392 QGLGKVLQL 400 (429)
T ss_pred CCCceEEEE
Confidence 998888864
No 219
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.74 E-value=3.9e-14 Score=126.77 Aligned_cols=277 Identities=14% Similarity=0.241 Sum_probs=174.0
Q ss_pred CcEEEEecCCCCC-CCccccccCCCceEEEEEecCCCeEEEEEcC----CCcEEEEEcCCC--ceeeeccCCCCCCceee
Q 012699 169 GTVRIWTYDSSTP-ASRNATIYCGTEIMSLEWECKSDRLLLIGTA----DGGIKAWNVDAK--RVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 169 g~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~ 241 (458)
+.|.+|+++.... +..............++++ +++++|++... +|.|..|++... ++...-...........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 6788888833222 1111223344556778888 56677777765 579999998764 33221111112245678
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEE---eec--------CCCCCcEEEEEEccCCCEEE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTV---LPL--------GEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~---~~~--------~~~~~~i~~~~~~~~~~~l~ 309 (458)
++++|+++.++++.... |.+.++++.. +..... +.. ........++.++|++++++
T Consensus 92 i~~~~~g~~l~vany~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEECTTSSEEEEEETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred EEEecCCCEEEEEEccC------------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 99999999999887654 7999999987 333322 211 11224578999999999988
Q ss_pred EEec-CCeEEEEeCCCCc--e--eeeee-CCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccC-CCeeEEeecCCcccC
Q 012699 310 ASAV-DGMIHMFDMSAGL--Q--ITGWP-AHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQN-QGQVLWTRNCSRFCD 381 (458)
Q Consensus 310 ~~~~-dg~i~v~d~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 381 (458)
+... ...|++|++.... . ...+. ......+.++|+|++++++... .++.|.++++.. ...............
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 8654 3479999987654 2 12222 3445678999999999876654 488899999982 223222222222212
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEec-CCCcEEEE
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGS-ADHSVQVM 455 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw 455 (458)
..........++++|||++|+++.. .+.|.+|+++......... ......+.++++|+|++|+++. .++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 1222236888999999999998775 5789999995332111111 2234589999999999888765 66789999
Q ss_pred eCC
Q 012699 456 SLS 458 (458)
Q Consensus 456 ~l~ 458 (458)
+++
T Consensus 320 ~~d 322 (345)
T PF10282_consen 320 DID 322 (345)
T ss_dssp EEE
T ss_pred EEe
Confidence 763
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3e-15 Score=131.18 Aligned_cols=278 Identities=12% Similarity=0.154 Sum_probs=194.9
Q ss_pred cCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699 145 GHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
+|...-+.|..+|||+|+ |||..--.|++||+........ ......+..+..-..+-..++.-..|.+|-+-..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE---RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~- 124 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE---RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY- 124 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeee---ecccccceeEEEeccchhhheEeecCceeeehhhc-
Confidence 577888899999999995 6777788999999987654321 11223333332221444555556667776654321
Q ss_pred CceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
|. ...+..+ ....+++++.-.. +++.++.. .|+-++++.|+.+..+.... +.++++..+
T Consensus 125 G~-hy~~RIP---~~GRDm~y~~~scDly~~gsg~--------------evYRlNLEqGrfL~P~~~~~--~~lN~v~in 184 (703)
T KOG2321|consen 125 GR-HYRTRIP---KFGRDMKYHKPSCDLYLVGSGS--------------EVYRLNLEQGRFLNPFETDS--GELNVVSIN 184 (703)
T ss_pred Ce-eeeeecC---cCCccccccCCCccEEEeecCc--------------ceEEEEcccccccccccccc--ccceeeeec
Confidence 21 1112222 2345666665444 44444443 89999999999988876443 679999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeee------CCCC-----CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITGWP------AHDS-----AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
+...+|++|+.+|.|..||.++...+.++. .|.+ .|+++.|+.+|-.+++|+.+|.+.|||++...+.+
T Consensus 185 ~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 185 EEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred CccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee
Confidence 999999999999999999999876655543 2333 49999999999999999999999999999876554
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
.. ......+|..+.|-+.+ +--++......++|||-.+++....... ...++.+|+-|++.++.++-+++
T Consensus 265 ~k--------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 265 VK--------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred ec--------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCC
Confidence 32 22344567888887753 3333445557799999999876655544 34599999999999999998887
Q ss_pred cEEEE
Q 012699 451 SVQVM 455 (458)
Q Consensus 451 ~v~iw 455 (458)
.+..|
T Consensus 336 ~m~~y 340 (703)
T KOG2321|consen 336 KMHTY 340 (703)
T ss_pred cceeE
Confidence 76655
No 221
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.73 E-value=2.3e-15 Score=123.71 Aligned_cols=360 Identities=13% Similarity=0.133 Sum_probs=211.8
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEeccccccc-----c-------------------ccceeeeeccCCceeeee
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEAC-----A-------------------TTATHMGSAEMGQTWASS 78 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~ 78 (458)
..+-|.++.| ..+|.+||+|..+|.+-++..+.... . +.+..+.|.++
T Consensus 24 eadiis~vef-~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~------- 95 (433)
T KOG1354|consen 24 EADIISAVEF-DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD------- 95 (433)
T ss_pred hhcceeeEEe-ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-------
Confidence 3455999999 99999999999999988875432211 0 22234555555
Q ss_pred CCccceeEeeccCCCcccccccccccCCcccceeeecc-CCCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeC
Q 012699 79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFND-GLYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFS 156 (458)
Q Consensus 79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~ 156 (458)
+....+.....|.++++|++.....+.......... ...-+.-+.......+..+...+.+.+ .+|+--|++++++
T Consensus 96 --~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 96 --GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred --CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 233344455679999999998766443221111111 111111111122222333333455555 3699999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCcccccc-C-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIY-C-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
.|++.++++. |=.|.+|+++-........... + ..-|++..|+|...+.++-.+..|+|++-|++...+.-..
T Consensus 174 sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 174 SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred CccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 9999998864 6789999986443322111111 1 2347888999888888999999999999999854321110
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (458)
. .....--.|...-+ +.+--..|..+.|+++|+|+++
T Consensus 253 s------KlfEepedp~~rsf-------------------------------------fseiIsSISDvKFs~sGryils 289 (433)
T KOG1354|consen 253 S------KLFEEPEDPSSRSF-------------------------------------FSEIISSISDVKFSHSGRYILS 289 (433)
T ss_pred h------hhhccccCCcchhh-------------------------------------HHHHhhhhhceEEccCCcEEEE
Confidence 0 00000000111100 1122245888999999999998
Q ss_pred EecCCeEEEEeC-CCCceeeeeeCCCC------------C---eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 311 SAVDGMIHMFDM-SAGLQITGWPAHDS------------A---ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 311 ~~~dg~i~v~d~-~~~~~~~~~~~~~~------------~---v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
-.. -+|++||+ ...+++.+++.|.. . -..++|+.++.+++||+....++++++..+.......
T Consensus 290 RDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl 368 (433)
T KOG1354|consen 290 RDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTL 368 (433)
T ss_pred ecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecc
Confidence 543 58999999 44677777776642 2 2457899999999999999999999977654433322
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.+.+.... ...+. .-+.+.+++......++- .-......+...+|+|..+.+|.+..+ .++|
T Consensus 369 ~asr~~~~---~~~~~------k~~~V~~~g~r~~~~~~v--------d~ldf~kkilh~aWhp~en~ia~aatn-nlyi 430 (433)
T KOG1354|consen 369 EASRKNMK---PRKVL------KLRLVSSSGKRKRDEISV--------DALDFRKKILHTAWHPKENSIAVAATN-NLYI 430 (433)
T ss_pred cccccCCc---ccccc------cceeeecCCCcccccccc--------chhhhhhHHHhhccCCccceeeeeecC-ceEE
Confidence 22221110 00000 112222233322211110 111223456778999999988877755 4665
Q ss_pred E
Q 012699 455 M 455 (458)
Q Consensus 455 w 455 (458)
|
T Consensus 431 f 431 (433)
T KOG1354|consen 431 F 431 (433)
T ss_pred e
Confidence 5
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=9.7e-15 Score=134.37 Aligned_cols=238 Identities=15% Similarity=0.126 Sum_probs=158.4
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---CCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..|.+||.+...... .......+...+|+ ++++.|+..+ .+..|.+|++.+++........ .....+.|+
T Consensus 179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCCEE---eecCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEEC
Confidence 368888887665432 23345678999999 5666666543 2357999999888654332222 234568999
Q ss_pred CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeC
Q 012699 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDM 322 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~ 322 (458)
|+++.++...... +...|.+||+.+++..... .+...+....|+|+|+.|+..+.+ + .|+++|+
T Consensus 252 PDG~~La~~~~~~----------g~~~I~~~d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 252 PDGSKLAFALSKT----------GSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 9999888654321 0126999999887665433 233457789999999988777654 3 4566677
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
.+++. ..+..+........|+|||++|+..+.+ ..|.+||+.++...... . ........|+|||+
T Consensus 319 ~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt-------~----~~~~~~p~~SpDG~ 386 (429)
T PRK03629 319 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLT-------D----TFLDETPSIAPNGT 386 (429)
T ss_pred CCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeC-------C----CCCCCCceECCCCC
Confidence 66544 3444444556678999999998876543 35888998765432111 0 01123578999999
Q ss_pred EEEEEeCCcc---EEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 400 RLLVTSGSVR---APIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 400 ~l~~~~~~~~---i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
+|+.++.++. ++++++++. ....+.+|.+.+...+|+|-
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCC-CeEECccCCCCcCCcccCCC
Confidence 9999887753 677787554 34555678888999999983
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=1e-14 Score=130.02 Aligned_cols=322 Identities=12% Similarity=0.069 Sum_probs=198.7
Q ss_pred eeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCC
Q 012699 39 TLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGL 118 (458)
Q Consensus 39 ~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 118 (458)
++++-..++++.+.|..+.+....+..... ....+.++++++++.+.+.|+.+.++|+....
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------- 69 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------- 69 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--------------
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcCCCeEEEEECCccc--------------
Confidence 456777889999999988876655543211 12235677888888888999999999987644
Q ss_pred CCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCcccccc-----CCC
Q 012699 119 YTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIY-----CGT 192 (458)
Q Consensus 119 ~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~-----~~~ 192 (458)
.+++++.-. ...++++++||++++++. .++.+.++|.++.+.+....... ...
T Consensus 70 --------------------~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~ 128 (369)
T PF02239_consen 70 --------------------VVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES 128 (369)
T ss_dssp --------------------EEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred --------------------EEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence 333443322 356899999999988764 68999999998887654332221 234
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.+..+..+|....++++--..+.|.+.|....+... .+... ....+..|+|++++++.+....
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~s------------ 193 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGS------------ 193 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGG------------
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc---ccccccccCcccceeeeccccc------------
Confidence 577777775555566666667889888877654332 22222 4578899999999887765443
Q ss_pred eeEEEEECCCCceeEEeecC--CCCCcEEEEEEccC----------CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe
Q 012699 271 ASLTVWNMKTWKAMTVLPLG--EDPPAITSLCFNHN----------GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI 338 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~----------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 338 (458)
..|.++|.++++....+... .|+.+...+ .+|. +...++.-....+.+||..+.+.++++.....+
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g- 271 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG- 271 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-
T ss_pred ceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-
Confidence 49999999998877665432 222233322 2222 222222222345667898999999999887777
Q ss_pred EEEEEcCCCCEEEEe----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEE
Q 012699 339 SSILFGPDETSIFSL----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPI 412 (458)
Q Consensus 339 ~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i 412 (458)
.-+..+|+++++++. ...+.|.++|.++.+....... .....+..+.|+++|+.+.++..+ +.|.+
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~--------~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP--------GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH--------HHT--EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec--------cCCCcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 788889999999988 4468899999998744332110 111237889999999988776654 37999
Q ss_pred EEccCCCccccc
Q 012699 413 YQVRGHASGMRT 424 (458)
Q Consensus 413 ~~~~~~~~~~~~ 424 (458)
||..+.+...++
T Consensus 344 ~D~~Tl~~~~~i 355 (369)
T PF02239_consen 344 YDAKTLKEKKRI 355 (369)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCcEEEEEE
Confidence 999998665443
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=1.3e-14 Score=118.08 Aligned_cols=241 Identities=12% Similarity=0.169 Sum_probs=161.4
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEE-eecccCCCCcceeeccce
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVS-AAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 271 (458)
...+++|+ .+..-+++|..+| .++|+.+--+...........-.+..+-| ..++++. |+..++ -....
T Consensus 7 ~~lsvs~N-QD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~p-------ky~pN 75 (346)
T KOG2111|consen 7 KTLSVSFN-QDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRP-------KYPPN 75 (346)
T ss_pred ceeEEEEc-cCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCC-------CCCCc
Confidence 34568998 7777788887766 89999875333222222111111222222 2233333 332211 11125
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-CCceeeeeeCCC--CCeEEEEEcCCCC
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQITGWPAHD--SAISSILFGPDET 348 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~--~~v~~~~~~~~~~ 348 (458)
.+.|||-...+++.++.+. .+|.++.++++ .|++. ..+.|+||... +.+.++.+..-. ..+.+++-..+..
T Consensus 76 kviIWDD~k~~~i~el~f~---~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSFN---SEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred eEEEEecccCcEEEEEEec---cceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 8999997777777777654 56999999876 45554 36789999987 455555554322 2243333333444
Q ss_pred EEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc-EEEEEccCCCcccccC-
Q 012699 349 SIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR-APIYQVRGHASGMRTL- 425 (458)
Q Consensus 349 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~-i~i~~~~~~~~~~~~~- 425 (458)
+||.=+ .-|.|+|-|+...... .......|...|.+++++.+|..+|+++..|+ |+|||..++..+..+.
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 555433 3789999999865331 12233578999999999999999999999986 8999999998776665
Q ss_pred -CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 426 -PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 426 -~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.....|.+++|||++.+||++|+.|+|.|+.+
T Consensus 223 G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred CCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 24568999999999999999999999999986
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=6.9e-15 Score=122.98 Aligned_cols=210 Identities=13% Similarity=0.218 Sum_probs=164.0
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKA 218 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~ 218 (458)
....-+++|..++.. |+ .|++|-.+|.+.+|..+.+.... .......+..+..+.-++.....+++|+.. ..+.+
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceee
Confidence 444566778777765 33 68888889999999987544211 112334456677777776777888889998 89999
Q ss_pred EEcCCCceeeeccCCCCC-------CceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEee
Q 012699 219 WNVDAKRVVCDLNTTDAF-------PSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLP 288 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~-------~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~ 288 (458)
||++..+.+.+-+..... -.++++.|.+. ...|+++... +.+++||.+.+ +++..+.
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~-------------hqvR~YDt~~qRRPV~~fd 244 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY-------------HQVRLYDTRHQRRPVAQFD 244 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc-------------eeEEEecCcccCcceeEec
Confidence 999988766554433211 13567888887 7788888877 59999999864 3556665
Q ss_pred cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 289 LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
+. ..+++++...|.++++++|..-|.+..||++.++.... +.+-.+.|+++..+|..+++++++-|..+||+|+.+.
T Consensus 245 ~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 245 FL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred cc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 54 45699999999999999999999999999999988776 8888999999999999999999999999999999985
Q ss_pred C
Q 012699 368 G 368 (458)
Q Consensus 368 ~ 368 (458)
+
T Consensus 323 k 323 (412)
T KOG3881|consen 323 K 323 (412)
T ss_pred h
Confidence 3
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.6e-15 Score=123.40 Aligned_cols=232 Identities=16% Similarity=0.243 Sum_probs=160.2
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
...+..++|+ +.-..++++..|-.|++||-.. +....++.... ..|.+++|-|.+..-++.+..
T Consensus 98 ~~dlr~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQ-rnvtclawRPlsaselavgCr------------- 161 (445)
T KOG2139|consen 98 EIDLRGVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQ-RNVTCLAWRPLSASELAVGCR------------- 161 (445)
T ss_pred hcceeeEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhh-cceeEEEeccCCcceeeeeec-------------
Confidence 3457889999 4566788899999999999877 44444443322 579999999987644443333
Q ss_pred eeEEEEECCCC------------ceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeCCCCC
Q 012699 271 ASLTVWNMKTW------------KAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPAHDSA 337 (458)
Q Consensus 271 g~i~i~d~~~~------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~ 337 (458)
+.|.+|..... .....++..+| .+|+++.|++||..+++++. |..|.|||..++..+.-.....+.
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 38999976421 12233444455 68999999999999998876 578999999998766555455677
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEcc
Q 012699 338 ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVR 416 (458)
Q Consensus 338 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~ 416 (458)
+.-+.||||+.+|++++-|+..++|+........ +. .-..+.+...+|+|+|++|+.+.. .-.++-....
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e------rw---~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE------RW---ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceec------ce---eccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 8999999999999999999999999665432110 11 112337899999999998776554 3333333222
Q ss_pred CCCcccc-------------cC------C---CCCcEEEEEECCCCCeEEEecC
Q 012699 417 GHASGMR-------------TL------P---HGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 417 ~~~~~~~-------------~~------~---h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
+...... +. + -.+++.+++|.|.|.+||+.-.
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 2111100 00 1 2467899999999999998644
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=1.3e-16 Score=136.04 Aligned_cols=230 Identities=17% Similarity=0.223 Sum_probs=189.4
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
..+.+.++ .++..++.|+.-|.+..+|..++++...+... ..|.++.|..+.++++++-.. .
T Consensus 131 GPY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LHneq~~AVAQK~--------------y 192 (545)
T KOG1272|consen 131 GPYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLHNEQFFAVAQKK--------------Y 192 (545)
T ss_pred CCeeeeec-CCccEEEecCCccceeeeecccceeeeeeehh---hhhhhhhhhcchHHHHhhhhc--------------e
Confidence 35678888 89999999999999999999999999888776 479999999999999988775 8
Q ss_pred EEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699 273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS 352 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 352 (458)
+.+||-.. ..+..+. .+ ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+
T Consensus 193 ~yvYD~~G-tElHClk--~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~ 268 (545)
T KOG1272|consen 193 VYVYDNNG-TELHCLK--RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL 268 (545)
T ss_pred EEEecCCC-cEEeehh--hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE
Confidence 99999654 4444443 22 56899999999888999999999999999999999999888899999999998888999
Q ss_pred ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699 353 LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 353 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
|...|+|.+|.-.....+. ....|.++|.++++.++|+|+++++.|..++|||++.-..+..... ..+..
T Consensus 269 GhsnGtVSlWSP~skePLv---------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~ 338 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLV---------KILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPAS 338 (545)
T ss_pred cCCCceEEecCCCCcchHH---------HHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcc
Confidence 9999999999987654332 2235778899999999999999999999999999998765554443 45677
Q ss_pred EEEECCCCCeEEEecCCCcEEEEe
Q 012699 433 TVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.+++|..|. || +|.-..|.||.
T Consensus 339 ~ls~Sqkgl-LA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 339 NLSLSQKGL-LA-LSYGDHVQIWK 360 (545)
T ss_pred ccccccccc-ee-eecCCeeeeeh
Confidence 888987763 44 33444788884
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=3.2e-14 Score=130.93 Aligned_cols=214 Identities=12% Similarity=0.111 Sum_probs=142.1
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
.|.++|.+......... .. ..+....|+|+|+.++..+... +...+.+|++.+++........+
T Consensus 180 ~l~~~d~dg~~~~~lt~-~~--~~~~~p~wSPDG~~la~~s~~~----------g~~~i~i~dl~~G~~~~l~~~~~--- 243 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHR-SP--QPLMSPAWSPDGSKLAYVTFES----------GRSALVIQTLANGAVRQVASFPR--- 243 (429)
T ss_pred eEEEEcCCCCCCEEeec-CC--CceeeeEEcCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEccCCCC---
Confidence 68899887655433222 22 4688999999999988765321 11489999998877655443333
Q ss_pred cEEEEEEccCCCEEEEE-ecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEE--eccCCC
Q 012699 295 AITSLCFNHNGKILAAS-AVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEW--SLQNQG 368 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw--d~~~~~ 368 (458)
....++|+|||+.|+.. +.+| .|++||+.+++.. .+..+...+....|+|||+.|+..+.+ +...+| |+.++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 34568999999988765 3344 5999999887654 344445567889999999988776653 444555 555432
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
... . . ..........|+|||++|+..+.+ ..|++||+.++... .+.. ........|+|||++|+.
T Consensus 323 ~~~-l------t---~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 PQR-I------T---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred eEE-e------e---cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEE
Confidence 211 1 0 112234568899999999887654 35888998776422 2221 123456889999999998
Q ss_pred ecCCCc---EEEEeC
Q 012699 446 GSADHS---VQVMSL 457 (458)
Q Consensus 446 ~~~dg~---v~iw~l 457 (458)
++.++. +.++++
T Consensus 391 ~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 391 SSSQGMGSVLNLVST 405 (429)
T ss_pred EEcCCCceEEEEEEC
Confidence 887764 566665
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.68 E-value=2.7e-14 Score=117.51 Aligned_cols=249 Identities=15% Similarity=0.270 Sum_probs=175.7
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
.+++.++||.+.|+....-|..+-+++.+.|.++|||--..............+.++.++.+. .....|+.|-.+|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-SESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-ccceEEEEEEecceEE
Confidence 467788999999999999998888999999999999954332222222233345778999998 7788899999999998
Q ss_pred EEEcCCC----ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE-CCCCceeEEeecCCC
Q 012699 218 AWNVDAK----RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN-MKTWKAMTVLPLGED 292 (458)
Q Consensus 218 ~wd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d-~~~~~~~~~~~~~~~ 292 (458)
-+.+... ...+... .+..++..+.|+....++++.+.|. -..|. .+.+..+..+.+...
T Consensus 94 efs~sedfnkm~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk--------------~~~~hc~e~~~~lg~Y~~~~~ 157 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDK--------------QFAWHCTESGNRLGGYNFETP 157 (404)
T ss_pred EEEhhhhhhhcchhhhhh--hhhcceeeEEecCCceeEEEecccc--------------ceEEEeeccCCcccceEeecc
Confidence 8876532 2222222 3347899999999999999998884 23332 223222222211111
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeC--CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDM--SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
.+++.+.-. +.+.|...|.|..-.+ ..-.++.++.+|.+++.+++|.|....|++|..|..+.+||+.-....
T Consensus 158 ---~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 158 ---ASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred ---CCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 111111111 5566666676665554 345678889999999999999999999999999999999999854332
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
. .....+...|..+..-+--+.|.+++.||.|.+|+++
T Consensus 233 ~--------~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 233 A--------YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred e--------eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 2 2234567778888888888899999999999999986
No 230
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=5.1e-15 Score=128.70 Aligned_cols=251 Identities=15% Similarity=0.186 Sum_probs=163.2
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc--cccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEcCC
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR--NATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
+....++-.|.+|+..- ...+.+|+...+..... ...........+-+|+. +.+--++.|-..|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 33444455566665532 34688888875332211 11222233344444531 3455677888889999998776
Q ss_pred Cceeeecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 224 KRVVCDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 224 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
.+....+. .......++++.|-|.+..++...... |.+.+||... .. +. .-.+...
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~s------------Gnlyly~~~~-------~~-~~--t~p~~~~ 262 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHAS------------GNLYLYDKEI-------VC-GA--TAPSYQA 262 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEec------------CceEEeeccc-------cc-cC--CCCcccc
Confidence 33222221 122236799999999877555444332 6889988621 00 00 0111222
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
.+++..+.....-+ ..+..++..+....+.|+..+|+|||++||+.+.||.++|||..+....-.
T Consensus 263 ~k~~~~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~--------- 327 (636)
T KOG2394|consen 263 LKDGDQFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV--------- 327 (636)
T ss_pred cCCCCeeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH---------
Confidence 34565565543211 122356666766677999999999999999999999999999987532211
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 438 (458)
....-+...+++|||||+||++|++|..|.||.+...+.+.+-.+|+..|+.++|.|
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 112334579999999999999999999999999999988888889999999999983
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.9e-14 Score=131.10 Aligned_cols=236 Identities=13% Similarity=0.109 Sum_probs=153.7
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
.+|.+||....... ....+...+...+|+ ++++.|+..+. +..|.+||+.+++........ .....+.|+
T Consensus 184 ~~l~i~D~~g~~~~---~lt~~~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~---g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNPQ---TILRSAEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR---GINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCce---EeecCCCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC---CCccCceEC
Confidence 46889998655432 123455678899999 56666666653 346999999888754332221 234578999
Q ss_pred CCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEe
Q 012699 246 PVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFD 321 (458)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d 321 (458)
|+++.++... .++ ...|.+||+.+++..... .+.......+|+|+|++|+..+. +| .|+++|
T Consensus 257 pDG~~l~~~~s~~g-----------~~~Iy~~d~~~g~~~~lt---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 257 PDGRRLALTLSRDG-----------NPEIYVMDLGSRQLTRLT---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred CCCCEEEEEEeCCC-----------CceEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 9999776543 321 137999999987754422 33334567899999998887764 34 477778
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG 398 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 398 (458)
+.+++.. .+..+.......+|+|+|++|+..+.++ .|.+||+.++.... . . .........|+|||
T Consensus 323 l~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-L------t----~~~~~~~p~~spdG 390 (433)
T PRK04922 323 ASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-L------T----PGSLDESPSFAPNG 390 (433)
T ss_pred CCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-C------C----CCCCCCCceECCCC
Confidence 7766543 3333334455789999999988765433 59999997654321 1 0 11123356899999
Q ss_pred CEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699 399 RRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438 (458)
Q Consensus 399 ~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 438 (458)
++|+..+.+ ..++++++.+. ....+..+.+.+..++|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 998877753 45788888654 3333444556778888887
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=4.6e-14 Score=118.16 Aligned_cols=268 Identities=14% Similarity=0.173 Sum_probs=191.2
Q ss_pred CCCCeEEEEeCCCCC--EEEEEeCCCcEEEEecCCCCCCCcc----ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 146 HTSPISCCRFSSSGN--NIASASVDGTVRIWTYDSSTPASRN----ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 146 h~~~v~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
-...|..++|.-+++ .|..++.|..+..+.+......... .......+|..+... +..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 345678888876554 4555557777877777665544322 222234566666653 4568888999999999
Q ss_pred EcCCCce----eeeccCCCCCCceeeeeecCCCCeEEE-eecccCCCCcceeeccceeEEEEECCCCceeEEeecCC---
Q 012699 220 NVDAKRV----VCDLNTTDAFPSVLDLKCSPVEPIFVS-AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE--- 291 (458)
Q Consensus 220 d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~--- 291 (458)
..+.+.. +..+... ..+..+.-++..+.+++ |+..+. ..+.+||+...+.+..-+...
T Consensus 131 ~~k~~d~hss~l~~la~g---~g~~~~r~~~~~p~Iva~GGke~~-----------n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG---PGLYDVRQTDTDPYIVATGGKENI-----------NELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred eccCCccccccceeeecC---CceeeeccCCCCCceEecCchhcc-----------cceeeeecccceeeeeccCCCCcc
Confidence 9885442 1222222 35666766776666555 555421 389999999875544332111
Q ss_pred ----CCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 292 ----DPPAITSLCFNHN--GKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 292 ----~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
-+-.++.+.|-+. ...|++++.-+.+++||.+. .+++..+..-+.+++++...|++++++++..-+.+..||+
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~ 276 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDL 276 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecc
Confidence 1235788889887 78999999999999999987 4678888888999999999999999999999999999999
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
+.+..... ...+..+.+.++..+|.+++|++++-|..++|+|+.+.+.+...+ -...++++-+.++
T Consensus 277 r~~kl~g~--------~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 277 RGGKLLGC--------GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRDD 342 (412)
T ss_pred cCceeecc--------ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecCC
Confidence 98654321 233567789999999999999999999999999999965554433 2345666666554
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.2e-13 Score=128.02 Aligned_cols=237 Identities=11% Similarity=0.106 Sum_probs=155.1
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..|.++|.++.... ....+...+...+|+ ++++.|+..+. +..|.+||+.+++.... .... ..+....|+
T Consensus 182 ~~l~~~d~dg~~~~---~lt~~~~~v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~~~~l-~~~~--g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANVR---YLTDGSSLVLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQRELV-GNFP--GMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCcE---EEecCCCCeEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCcEEEe-ecCC--CcccCcEEC
Confidence 36888887655432 223456689999999 56666666543 46899999998875432 2222 356788999
Q ss_pred CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeC
Q 012699 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDM 322 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~ 322 (458)
|+++.++...... +...|.+||+.+++... + ..+........|+|||+.|+..+. +| .|+++|+
T Consensus 255 PDG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~-L--t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 255 PDGRKVVMSLSQG----------GNTDIYTMDLRSGTTTR-L--TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCCCEEEEEEecC----------CCceEEEEECCCCceEE-c--cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 9999876543321 01368888998876544 2 234445677899999998887664 33 6888898
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
..++. ..+..+...+....|+|+|++|+..+.+ ..|.+||+........ . ....+....|+|||+
T Consensus 322 ~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l-------t----~~~~~~~p~~spDG~ 389 (435)
T PRK05137 322 DGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL-------T----SGFLVEGPTWAPNGR 389 (435)
T ss_pred CCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec-------c----CCCCCCCCeECCCCC
Confidence 76544 3444445567778999999999876543 3588888754432111 0 112356689999999
Q ss_pred EEEEEeCC------ccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 400 RLLVTSGS------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 400 ~l~~~~~~------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
.|+..+.+ ..++++++.+... ..+ .....+...+|+|-
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l-~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REV-PTPGDASDPAWSPL 433 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEc-cCCCCccCcccCCC
Confidence 98876543 2578888876543 222 23445777888874
No 234
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=9.1e-14 Score=128.82 Aligned_cols=215 Identities=15% Similarity=0.166 Sum_probs=143.4
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
..|.++|.+..... .+..+. ..+....|+|+++.++..+... +...|.+||+.+++..... ...
T Consensus 182 ~~l~~~d~dg~~~~-~lt~~~--~~v~~p~wSpDG~~lay~s~~~----------g~~~i~~~dl~~g~~~~l~---~~~ 245 (435)
T PRK05137 182 KRLAIMDQDGANVR-YLTDGS--SLVLTPRFSPNRQEITYMSYAN----------GRPRVYLLDLETGQRELVG---NFP 245 (435)
T ss_pred eEEEEECCCCCCcE-EEecCC--CCeEeeEECCCCCEEEEEEecC----------CCCEEEEEECCCCcEEEee---cCC
Confidence 37888888655433 333322 5789999999999888876432 1148999999987764432 334
Q ss_pred CcEEEEEEccCCCEEE-EEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCC
Q 012699 294 PAITSLCFNHNGKILA-ASAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQ 367 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~ 367 (458)
..+...+|+|||+.|+ +.+.++ .|++||+.+++. ..+..+........|+|||+.|+..+. +| .|.++|+...
T Consensus 246 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 4577889999999876 444454 488889887654 445556666778999999998887664 33 5778887654
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 444 (458)
...... .....+....|+|||++|+....+ ..|.+|++.+... ........+..+.|+|||+.|+
T Consensus 325 ~~~~lt----------~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~lt~~~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NPRRIS----------FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RILTSGFLVEGPTWAPNGRVIM 392 (435)
T ss_pred CeEEee----------cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--EeccCCCCCCCCeECCCCCEEE
Confidence 322111 112335567899999999887653 3688888865532 2222233577889999999877
Q ss_pred EecCC------CcEEEEeC
Q 012699 445 TGSAD------HSVQVMSL 457 (458)
Q Consensus 445 s~~~d------g~v~iw~l 457 (458)
..+.+ ..+.++++
T Consensus 393 ~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 393 FFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred EEEccCCCCCcceEEEEEC
Confidence 65432 24566554
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.3e-14 Score=117.55 Aligned_cols=148 Identities=15% Similarity=0.303 Sum_probs=104.3
Q ss_pred EEEEEccCCCEEEEEec----------CCeEEEEeCCC-CceeeeeeC-CCCCeEEEEEcCCCCEEEEe--cCCCeEEEE
Q 012699 297 TSLCFNHNGKILAASAV----------DGMIHMFDMSA-GLQITGWPA-HDSAISSILFGPDETSIFSL--GSDGKIIEW 362 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~----------dg~i~v~d~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 362 (458)
..+.|+|+|.+|++-.. -|...+|.++. ..+...+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 56789999987765433 13455555532 334444433 34579999999999987654 457799999
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
|++ ...... .....+..+.|||+|++|++++. .|.+.+||.+..+.+... .|. .++.++|+||
T Consensus 89 d~~-~~~i~~-----------~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~-~~t~~~WsPd 154 (194)
T PF08662_consen 89 DVK-GKKIFS-----------FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHS-DATDVEWSPD 154 (194)
T ss_pred cCc-ccEeEe-----------ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccC-cEEEEEEcCC
Confidence 996 222211 12345678999999999999874 367999999976554333 343 4789999999
Q ss_pred CCeEEEecC------CCcEEEEeCC
Q 012699 440 LPMFLTGSA------DHSVQVMSLS 458 (458)
Q Consensus 440 ~~~l~s~~~------dg~v~iw~l~ 458 (458)
|++|+++.. |..++||++.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec
Confidence 999998764 7889999863
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.65 E-value=5e-14 Score=114.06 Aligned_cols=160 Identities=15% Similarity=0.314 Sum_probs=112.0
Q ss_pred eeeeecCCCCeEEEeeccc-CCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEE--ecCC
Q 012699 240 LDLKCSPVEPIFVSAAASR-RYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAAS--AVDG 315 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg 315 (458)
..+.|+|+|..|+.-...+ .......+ |...+|.++. ......+.+.. .++|.+++|+|+|+.|++. ..++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~----~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYY----GEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEE----eeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCc
Confidence 4688999998777655421 11111111 3555665532 24455554433 3469999999999987654 4577
Q ss_pred eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699 316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.+.+||+++.+..... ....+..+
T Consensus 84 ~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-----------~~~~~t~~ 149 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-----------EHSDATDV 149 (194)
T ss_pred ccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-----------ccCcEEEE
Confidence 99999997 66666664 567889999999999999875 467999999965443211 12346889
Q ss_pred EEccCCCEEEEEeC------CccEEEEEccCC
Q 012699 393 ALDVNGRRLLVTSG------SVRAPIYQVRGH 418 (458)
Q Consensus 393 ~~s~~g~~l~~~~~------~~~i~i~~~~~~ 418 (458)
+|||||++|++++. |+.++||+..+.
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99999999999875 678899999765
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-13 Score=127.16 Aligned_cols=237 Identities=16% Similarity=0.138 Sum_probs=145.7
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-C--CcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-D--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..+.++|.+..... ....+...+.+.+|+ ++++.|+..+. + ..|.+||+.+++........ .......|+
T Consensus 176 ~~L~~~D~dG~~~~---~l~~~~~~v~~p~wS-PDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~---g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDADGQNAQ---SALSSPEPIISPAWS-PDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK---GSNSAPAWS 248 (427)
T ss_pred cEEEEECCCCCCce---EeccCCCCcccceEc-CCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC---CCccceEEC
Confidence 35667776443322 123455678899999 56666666553 2 35999999988764332222 345678999
Q ss_pred CCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEE--e
Q 012699 246 PVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMF--D 321 (458)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~--d 321 (458)
|+++.++... .++. ..|.++|+..+.. ..+ ..+........|+|||+.|+..+. +|...+| +
T Consensus 249 PDG~~la~~~~~~g~-----------~~Iy~~d~~~~~~-~~l--t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 249 PDGRTLAVALSRDGN-----------SQIYTVNADGSGL-RRL--TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred CCCCEEEEEEccCCC-----------ceEEEEECCCCCc-EEC--CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 9999887543 3310 2455556665543 333 233344567889999998876654 4555555 4
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG 398 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 398 (458)
+.+++. ..+..+.......+|+|+|++|+..+.++ .|.+||+.++...... . ........|+|||
T Consensus 315 ~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-------~----~~~~~~p~~spdg 382 (427)
T PRK02889 315 ASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-------D----TTRDESPSFAPNG 382 (427)
T ss_pred CCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-------C----CCCccCceECCCC
Confidence 444443 22222233345688999999998776654 5999999875432111 0 1123567999999
Q ss_pred CEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 399 RRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 399 ~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
+.|+.++.++ .+++.++.+. ....+..+.+.+...+|+|-
T Consensus 383 ~~l~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 383 RYILYATQQGGRSVLAAVSSDGR-IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CEEEEEEecCCCEEEEEEECCCC-ceEEeecCCCCCCCCccCCC
Confidence 9998887643 3566666433 33334456677888899874
No 238
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=4.3e-13 Score=117.65 Aligned_cols=270 Identities=12% Similarity=0.185 Sum_probs=168.7
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-----cC-----CCcEE
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-----TA-----DGGIK 217 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-----~~-----dg~i~ 217 (458)
.+++..+++++|+++|.+. +..++|++....... ...... .+.++.|+ +.+.+|.+= .. .-.+.
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~---lt~~~~-~~~~L~fS-P~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVV---LCVELK-KTYDLLFS-PKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEE---EEeccc-eeeeeeec-ccccccccccccccccCCCCCCCcee
Confidence 3467788999998887764 678999998776522 122222 78899999 556666542 11 23578
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+|+++++.....+...... -+.+.|+.|..+.+--.. +.+.+|++.+.+.... .-+...|+
T Consensus 109 v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~arlv~--------------nev~f~~~~~f~~~~~---kl~~~~i~ 169 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAARLVS--------------NEVQFYDLGSFKTIQH---KLSVSGIT 169 (566)
T ss_pred eeeeccceehhheehhhhc--Ccccccccchhhhhhhhc--------------ceEEEEecCCccceee---eeecccee
Confidence 9999996655555444322 267888887765544333 2667776655222111 11223344
Q ss_pred EEEEccCC--CEEEE-----EecCCe------------------------------------------------------
Q 012699 298 SLCFNHNG--KILAA-----SAVDGM------------------------------------------------------ 316 (458)
Q Consensus 298 ~~~~~~~~--~~l~~-----~~~dg~------------------------------------------------------ 316 (458)
.+.+||.+ ..+++ ++.-+.
T Consensus 170 ~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYG 249 (566)
T KOG2315|consen 170 MLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYG 249 (566)
T ss_pred eEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccc
Confidence 44554431 11111 112223
Q ss_pred ---EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe--cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 317 ---IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL--GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 317 ---i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
++++++........+ ...++|.++.|+|+++.++++ -.-..+.|||++.. .+.. ...++-+.
T Consensus 250 Eq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~d-----------f~egpRN~ 316 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFD-----------FPEGPRNT 316 (566)
T ss_pred cceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEe-----------CCCCCccc
Confidence 344443311111111 236899999999999876654 44678999999742 2221 23445678
Q ss_pred EEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC------CCcEEEEeC
Q 012699 392 MALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA------DHSVQVMSL 457 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw~l 457 (458)
+-|+|.|++|+.++-+ |.+.+||+.+.+.+..+..- .-+-+.|+|||++++|+.. |..++||+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 9999999999887754 79999999997766665542 3455799999999988764 688999986
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=4.3e-13 Score=117.91 Aligned_cols=236 Identities=12% Similarity=0.186 Sum_probs=166.8
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
|.-.-.+.|-..++.-..|.+|.+...-.... ...-+..-..++++.++..+++.|+ ...|+-++++.|+.+..
T Consensus 97 V~feiLsDD~SK~v~L~~DR~IefHak~G~hy-----~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P 170 (703)
T KOG2321|consen 97 VDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY-----RTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNP 170 (703)
T ss_pred eeEEEeccchhhheEeecCceeeehhhcCeee-----eeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccc
Confidence 33333444444444455677776653222111 1111222355666655555555544 45788899999999888
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----CC-----CcEEEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----DP-----PAITSLC 300 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~-----~~i~~~~ 300 (458)
+.... +.++.+..++-..++++|+.+ |.|..||.++......+.... ++ ..|+++.
T Consensus 171 ~~~~~--~~lN~v~in~~hgLla~Gt~~-------------g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~ 235 (703)
T KOG2321|consen 171 FETDS--GELNVVSINEEHGLLACGTED-------------GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK 235 (703)
T ss_pred ccccc--ccceeeeecCccceEEecccC-------------ceEEEecchhhhhheeeecccccCCCccccccCcceEEE
Confidence 87765 679999999999999999988 699999999877666554322 22 3499999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCC--CCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPD--ETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
|+.+|-.+++|+.+|.+.|||+++.+++.. ..| .-+|..+.|.+. ++.+++. +...++|||-.+++.....
T Consensus 236 F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi--- 310 (703)
T KOG2321|consen 236 FRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASI--- 310 (703)
T ss_pred ecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeec---
Confidence 999999999999999999999999888765 334 448899999875 4455544 4567999999887554322
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
.....++.+++-|++.+++++..+..+..|=+...
T Consensus 311 -------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 311 -------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred -------cccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 22334888999999999999999988877766544
No 240
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.6e-13 Score=125.14 Aligned_cols=209 Identities=11% Similarity=0.124 Sum_probs=134.4
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
..|.++|...... ..+.... ..+...+|+|+++.++..+... +...|.+||+.+++....... .
T Consensus 176 ~~L~~~D~dG~~~-~~l~~~~--~~v~~p~wSPDG~~la~~s~~~----------~~~~I~~~dl~~g~~~~l~~~---~ 239 (427)
T PRK02889 176 YQLQISDADGQNA-QSALSSP--EPIISPAWSPDGTKLAYVSFES----------KKPVVYVHDLATGRRRVVANF---K 239 (427)
T ss_pred cEEEEECCCCCCc-eEeccCC--CCcccceEcCCCCEEEEEEccC----------CCcEEEEEECCCCCEEEeecC---C
Confidence 3577777644332 2232222 5688999999999988776432 113799999998876543322 2
Q ss_pred CcEEEEEEccCCCEEEE-EecCCeEEEE--eCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCC-
Q 012699 294 PAITSLCFNHNGKILAA-SAVDGMIHMF--DMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQG- 368 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~-~~~dg~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~- 368 (458)
......+|+|||+.|+. .+.+|...+| |+..+. ...+..+........|+|||+.|+..+. ++...+|.+....
T Consensus 240 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred CCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 34678999999998864 5667765555 554443 4555555556677899999998876654 5666777654221
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
..... . .........+|||||++|+..+.++ .|++||+.++... .+.. ......+.|+|||+.|+.
T Consensus 319 ~~~~l------t---~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 319 AAQRV------T---FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILY 387 (427)
T ss_pred ceEEE------e---cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEE
Confidence 11111 0 0112234578999999999877654 6999999876432 2222 233467899999998877
Q ss_pred ecCCC
Q 012699 446 GSADH 450 (458)
Q Consensus 446 ~~~dg 450 (458)
++.++
T Consensus 388 ~~~~~ 392 (427)
T PRK02889 388 ATQQG 392 (427)
T ss_pred EEecC
Confidence 66543
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=2.8e-12 Score=111.35 Aligned_cols=373 Identities=13% Similarity=0.092 Sum_probs=223.4
Q ss_pred ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699 20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK 99 (458)
Q Consensus 20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 99 (458)
+..-.-++..+.+ ||.|.+|++... ..+.+|....... +.|-.......+.+++.++||.+.+....+ +
T Consensus 28 ~~~~~~p~~~~~~-SP~G~~l~~~~~-~~V~~~~g~~~~~------l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~---~ 96 (561)
T COG5354 28 FESENWPVAYVSE-SPLGTYLFSEHA-AGVECWGGPSKAK------LVRFRHPDVKYLDFSPNEKYLVTWSREPII---E 96 (561)
T ss_pred ccccCcchhheee-cCcchheehhhc-cceEEccccchhh------eeeeecCCceecccCcccceeeeeccCCcc---C
Confidence 3335566889999 999999998764 4477787665532 223333334456677778888877654432 0
Q ss_pred cccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCC--eE-EEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 100 LEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSP--IS-CCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
.+ ..++|.+..- -..-++......+..+.+-..+ .. -+.|+.+.+++|-- ....+.|+++
T Consensus 97 pe---------------~e~sp~~~~n-~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 97 PE---------------IEISPFTSKN-NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred hh---------------hccCCccccC-ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 00 0011111100 0000111111233444444444 44 57888888776554 2346999997
Q ss_pred CCCCCCCccccccCCCceEEEEEecC-CCeEEEE-----EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECK-SDRLLLI-----GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
+...............+...+|+|. +...|+. ....+++++|.+..+..+.+-.... ..-..+.|.+.|..
T Consensus 160 -t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk--~~~~qLkW~~~g~~ 236 (561)
T COG5354 160 -TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK--VSGVQLKWQVLGKY 236 (561)
T ss_pred -CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe--ecccEEEEecCCce
Confidence 4333211111112356788888875 3344443 3567889999998776655433322 22346889999987
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE--ecCCeEEEEeCCCCcee
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS--AVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~v~d~~~~~~~ 328 (458)
++.-....- ...-.-.+...+.++++......-.. ...++|...+|.|.++.+++. -.+..+.++|++.. ..
T Consensus 237 ll~l~~t~~--ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~ 310 (561)
T COG5354 237 LLVLVMTHT--KSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR 310 (561)
T ss_pred EEEEEEEee--ecccceeccceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccceeecccccc-eE
Confidence 665332211 00111122247888888743332221 345789999999988877654 46788999999855 33
Q ss_pred eeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 329 TGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
.. .....=+.+.|+|.+++++.++-| |.+-+||............ .....-+.|+||++++.+..
T Consensus 311 ~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----------~~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 311 FY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----------GLNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred Ee--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee----------cCCceEeeccCCceEEEecC
Confidence 33 345566778999999999987764 5699999886544432211 11234467999999998775
Q ss_pred C------CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 406 G------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 406 ~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
. |+.+.|||+.+..- ...+.+.|.|.+++.-+.+.+
T Consensus 379 ts~k~~~Dn~i~l~~v~g~~~--------fel~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 379 TSEKLRVDNSIKLWDVYGAKV--------FELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred CCcccccCcceEEEEecCchh--------hhhhhccccCCcccceeeccC
Confidence 3 67899999987632 255677788877766555544
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=6.1e-13 Score=124.99 Aligned_cols=202 Identities=16% Similarity=0.178 Sum_probs=158.1
Q ss_pred cceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccccc
Q 012699 25 ETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFED 104 (458)
Q Consensus 25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 104 (458)
+.|....+ .-++..++.+..++.+-+|+...+.....+.+-..++-..-+.+..+...-++++|+.-+.+.+|+.....
T Consensus 88 ~wi~g~~l-~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKL-FEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccch-hhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 34444556 66788888888899999999988877755554444444344556677788999999999999999976211
Q ss_pred CCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc
Q 012699 105 VGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR 184 (458)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 184 (458)
. . ..+.||.+.|..+.|+.||++++++|.|.++|+|++++.+...
T Consensus 167 -~--------------------------------p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~- 211 (967)
T KOG0974|consen 167 -K--------------------------------P-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG- 211 (967)
T ss_pred -C--------------------------------c-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-
Confidence 0 0 0467999999999999999999999999999999999887653
Q ss_pred cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699 185 NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN 264 (458)
Q Consensus 185 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (458)
.....|...++.+.|. ++ .+++++.|-+.++|+.+..+. ..+..+.. ..+..++..++....++++.|
T Consensus 212 ~~~fgHsaRvw~~~~~-~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g-~~iw~~~~~~~~~~~vT~g~D------- 279 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFL-PN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSG-KGIWKIAVPIGVIIKVTGGND------- 279 (967)
T ss_pred cccccccceeEEEEec-cc--eeEEeccceEEEEEeccccee-hhhhhhhh-cceeEEEEcCCceEEEeeccC-------
Confidence 4567788999999998 44 899999999999997654443 35555543 568999999999999999988
Q ss_pred eeeccceeEEEEECCC
Q 012699 265 IYSWGFASLTVWNMKT 280 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~ 280 (458)
|.+++||+..
T Consensus 280 ------s~lk~~~l~~ 289 (967)
T KOG0974|consen 280 ------STLKLWDLNG 289 (967)
T ss_pred ------cchhhhhhhc
Confidence 5888888754
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=6.6e-12 Score=112.49 Aligned_cols=250 Identities=15% Similarity=0.231 Sum_probs=161.5
Q ss_pred CCeEEEEeCCCCCEEEEEeC----CCcEEEEecCCC--CCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEE
Q 012699 148 SPISCCRFSSSGNNIASASV----DGTVRIWTYDSS--TPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWN 220 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd 220 (458)
.....++++|++++|+++.+ ++.|..|++... ...........+.....++++ +++++|+++. .+|.+.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEE
Confidence 34556889999999988876 578999988764 222211222245566788998 5566555554 589999999
Q ss_pred cCC-Cceeee---cc--------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc--ee--
Q 012699 221 VDA-KRVVCD---LN--------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK--AM-- 284 (458)
Q Consensus 221 ~~~-~~~~~~---~~--------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~--~~-- 284 (458)
+.. +..... +. ..+.......+.++|+++++++..... ..|.+|++.... ..
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~------------D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA------------DRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT------------TEEEEEEE-TTS-TEEEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC------------CEEEEEEEeCCCceEEEe
Confidence 987 333222 11 012224577899999999888775433 399999987654 32
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCC--CCc--eeeeeeC----C--CCCeEEEEEcCCCCEEEEe
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMS--AGL--QITGWPA----H--DSAISSILFGPDETSIFSL 353 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~--~~~~~~~----~--~~~v~~~~~~~~~~~l~~~ 353 (458)
..+... .....+.++|+|+++++++..+ ++.|.+|++. ++. .+..+.. . ......|+++|||++|+++
T Consensus 184 ~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 184 DSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 233333 3345799999999998876654 7789999988 332 2222221 1 1257889999999988776
Q ss_pred c-CCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699 354 G-SDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG 417 (458)
Q Consensus 354 ~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~ 417 (458)
. .++.|.+|++... +.+...... ......+..++++|+|++|+++.. ++.|.+|+++.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~------~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTV------PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEE------EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred eccCCEEEEEEEecCCCceEEEEEE------eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 5 4778999999432 333222111 112344789999999999999885 57899998854
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=1e-11 Score=103.85 Aligned_cols=275 Identities=11% Similarity=0.172 Sum_probs=181.0
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASV---DGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKA 218 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~ 218 (458)
.+.+.++-|+|+|++++|.++-. +|.|..|.++. ++..........+.+...++++ +++++++++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC-CCCCEEEEEEccCceEEE
Confidence 46677889999999999988854 47788887765 4443322233334555888998 77777777765 579999
Q ss_pred EEcCC-CceeeeccCCCCC----------CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699 219 WNVDA-KRVVCDLNTTDAF----------PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL 287 (458)
Q Consensus 219 wd~~~-~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~ 287 (458)
+-++. |.+........+. +-+....+.|+++++++..-.. -.|.+|++..++....-
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~------------Dri~~y~~~dg~L~~~~ 183 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT------------DRIFLYDLDDGKLTPAD 183 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC------------ceEEEEEcccCcccccc
Confidence 99865 3322221211111 1277889999999998876543 29999999977654432
Q ss_pred ecC-CCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCC-ceeeeeeC---------CCCCeEEEEEcCCCCEEEEecC
Q 012699 288 PLG-EDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAG-LQITGWPA---------HDSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 288 ~~~-~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~-~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~ 355 (458)
... ......+.|.|+|++++..+.++ +++|.+|..+.. ..+..++. ......+|..+|||++|+++..
T Consensus 184 ~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 184 PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 211 12245689999999998876554 899999998763 22232221 1345678899999999998755
Q ss_pred -CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcccccC---CCCCc
Q 012699 356 -DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASGMRTL---PHGAA 430 (458)
Q Consensus 356 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~~~~~---~h~~~ 430 (458)
...|.+|.+......+.... ....+......+.|+|+|++|+++..+ ..|.+|..+...-..... .....
T Consensus 264 g~dsI~~f~V~~~~g~L~~~~-----~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~ 338 (346)
T COG2706 264 GHDSIAVFSVDPDGGKLELVG-----ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPE 338 (346)
T ss_pred CCCeEEEEEEcCCCCEEEEEE-----EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCC
Confidence 44788888876544332211 112334447789999999999999876 568888776543222222 23345
Q ss_pred EEEEEEC
Q 012699 431 ITTVDWH 437 (458)
Q Consensus 431 v~~~~~~ 437 (458)
..|+.|.
T Consensus 339 Pvcv~f~ 345 (346)
T COG2706 339 PVCVKFL 345 (346)
T ss_pred cEEEEEc
Confidence 5566654
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.3e-13 Score=126.00 Aligned_cols=205 Identities=16% Similarity=0.132 Sum_probs=136.4
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCC---CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC--c
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVD---GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG--G 215 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~ 215 (458)
+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... ............|+|.+..++++.+.+| .
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 3455677789999999999999887643 469999998776432 1122334457899954444545656665 5
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
|.+||+.+++... +.... .......|+|+++.++..+.... ...|.++|+.+++... +...+ ..
T Consensus 274 Iy~~d~~~g~~~~-lt~~~--~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~-lt~~g--~~ 337 (433)
T PRK04922 274 IYVMDLGSRQLTR-LTNHF--GIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAER-LTFQG--NY 337 (433)
T ss_pred EEEEECCCCCeEE-CccCC--CCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEE-eecCC--CC
Confidence 9999999887543 32221 33467899999998887764320 0257777887765433 32222 23
Q ss_pred EEEEEEccCCCEEEEEecCC---eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccC
Q 012699 296 ITSLCFNHNGKILAASAVDG---MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQN 366 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~ 366 (458)
....+|+|+|++|+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+.+ +.+.++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 45689999999998765443 6999999877654 333 22345567999999988776653 3577777753
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.61 E-value=2.7e-13 Score=111.75 Aligned_cols=309 Identities=14% Similarity=0.208 Sum_probs=211.1
Q ss_pred HHHHHhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699 11 EEKEAQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS 90 (458)
Q Consensus 11 ~~~~~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (458)
..+...++.++||.+.|++... -+...-+.+.+.|.+++||.-....
T Consensus 11 ~~kp~ll~~~eG~~d~vn~~~l-~~~e~gv~~~s~drtvrv~lkrds~-------------------------------- 57 (404)
T KOG1409|consen 11 TKKPELLSKIEGSQDDVNAAIL-IPKEEGVISVSEDRTVRVWLKRDSG-------------------------------- 57 (404)
T ss_pred ccchhhhhhhcCchhhhhhhee-ccCCCCeEEccccceeeeEEecccc--------------------------------
Confidence 3566788999999999999888 8888888899999999988533220
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT 170 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 170 (458)
+ |.|+ ....-..+++++.+.++...|+.|-..|+
T Consensus 58 ----------q-----------------~wps-------------------I~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 58 ----------Q-----------------YWPS-------------------IYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred ----------c-----------------cCch-------------------hhhhCCCCceEeeeeccceEEEEEEecce
Confidence 0 0011 01123467889999999999999999999
Q ss_pred EEEEecCCCC--CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC
Q 012699 171 VRIWTYDSST--PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE 248 (458)
Q Consensus 171 v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 248 (458)
+.-+.+...- .........|...+..+-|+ .....+++.+.|..+.---.+.+..+..+.... ...++.+.-.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~-~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~---~~t~~~~d~~- 166 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFS-LTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET---PASALQFDAL- 166 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEec-CCceeEEEeccccceEEEeeccCCcccceEeec---cCCCCceeeE-
Confidence 9888764422 22223445577889999998 677788888888777655455544332211110 1111111111
Q ss_pred CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-e
Q 012699 249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-Q 327 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~ 327 (458)
+...+... |.+..-.+....+....++.+|.+.+.+++|.|....|++|..|..+.+||+--.+ .
T Consensus 167 -~~fvGd~~-------------gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 167 -YAFVGDHS-------------GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred -EEEecccc-------------cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 22222222 45555555444555555567899999999999999999999999999999986533 3
Q ss_pred eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-------------------------------------
Q 012699 328 ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV------------------------------------- 370 (458)
Q Consensus 328 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------------------------- 370 (458)
...+.+|...|..+...+.-+.+++++.||.|.+|+++.....
T Consensus 233 ~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~c 312 (404)
T KOG1409|consen 233 AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHC 312 (404)
T ss_pred eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhh
Confidence 4567799999999999888889999999999999999741110
Q ss_pred ------------------------EEee----------cC--CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699 371 ------------------------LWTR----------NC--SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 371 ------------------------~~~~----------~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~ 414 (458)
...+ .. ..+..+......|+.+.+...-.+|++++.|..|+|||
T Consensus 313 rkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 313 RKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred hhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence 0000 00 01222333455688888888888999999999999999
Q ss_pred ccC
Q 012699 415 VRG 417 (458)
Q Consensus 415 ~~~ 417 (458)
+..
T Consensus 393 ~~~ 395 (404)
T KOG1409|consen 393 VRS 395 (404)
T ss_pred chh
Confidence 964
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.8e-12 Score=113.55 Aligned_cols=308 Identities=13% Similarity=0.148 Sum_probs=197.0
Q ss_pred CCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeC-----------CCcEEEEecCCCC
Q 012699 117 GLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASV-----------DGTVRIWTYDSST 180 (458)
Q Consensus 117 ~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----------dg~v~iwd~~~~~ 180 (458)
..|||-|.++++....+..-. ..++.| .|. .|.-+.|||..+||+|-+. ...++|||+.++.
T Consensus 216 v~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~ 293 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL 293 (698)
T ss_pred EEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence 458999999988655443322 222222 244 4889999999999999652 2579999999998
Q ss_pred CCCccccccCCCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699 181 PASRNATIYCGTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259 (458)
Q Consensus 181 ~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 259 (458)
..........+..++ -..|+ .++.+++.-.. ..|.||+..+-.++..-.. ....|....|+|.+..|+.-.....
T Consensus 294 lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 294 LKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred hhcceeccCCCccccceEEec-cCCceeEEecc-ceEEEEecCceeeeccccc--CCccccCcccCCCcceEEEEccccc
Confidence 765444433333333 35788 78888887776 4799998776443322111 1256889999999998887654421
Q ss_pred CCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe----------cCCeEEEEeCCCCce-e
Q 012699 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA----------VDGMIHMFDMSAGLQ-I 328 (458)
Q Consensus 260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~-~ 328 (458)
.- ...+.+..+.+++.++...+.. -.=..+-|-.+|.+|+.-- .-..+.|+.++.... +
T Consensus 370 ~~--------parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv 439 (698)
T KOG2314|consen 370 NI--------PARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV 439 (698)
T ss_pred CC--------cceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc
Confidence 11 1377777777777666544321 1123466777888887532 112355666654332 2
Q ss_pred eeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699 329 TGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT 404 (458)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 404 (458)
... .-...|...+|-|.|+.+++.+. ..++.+|.+.+. ..+... . .-.....+.+.|+|.|++++++
T Consensus 440 e~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV-------k-~~dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 440 EVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV-------K-ELDKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred eee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh-------h-hhcccccceEEEcCCCcEEEEE
Confidence 222 34668899999999988776554 456889988742 211100 0 1122446779999999999887
Q ss_pred eC---CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 405 SG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 405 ~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
.- .|.+.++|..-......-.......+.+.|.|.|+++++++.-
T Consensus 511 ~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred EecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 54 6889999987522111111222456789999999999998764
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=9.9e-13 Score=106.19 Aligned_cols=266 Identities=15% Similarity=0.129 Sum_probs=178.4
Q ss_pred CCcEEEEecCCCCCCCcc-ccccCCCceEEEEEec--CCCe-EEEEEcCCCcEEEEEcCCCceeeeccCCCC---C-Cce
Q 012699 168 DGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWEC--KSDR-LLLIGTADGGIKAWNVDAKRVVCDLNTTDA---F-PSV 239 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~-~~v 239 (458)
-|.+.+|++...+..... ........+..+.|.. .++. .++-+...|.|.+|..........++.-.. . ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 467888888776655411 1122335567777752 3444 566777889999998765544433332211 0 124
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEE
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIH 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 318 (458)
.++.|++.+..+++...+ |.+.+-+............+.|..+.....|+. +.+++++|+.|+.+.
T Consensus 125 lslD~~~~~~~i~vs~s~-------------G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~ 191 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSR-------------GSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS 191 (339)
T ss_pred eEEEeeccCceEEEEcCC-------------CcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence 567888888887777665 577766655555555445567877888888886 456889999999999
Q ss_pred EEeCCC-Cceeee-eeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 319 MFDMSA-GLQITG-WPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 319 v~d~~~-~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
.||++. ++.+.. .+.|...|.+|.-+| .+.++++|+.|..|++||.++.++++... ...+.|+.+..+
T Consensus 192 ~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~---------~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 192 CWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA---------KVGGGVWRIKHH 262 (339)
T ss_pred EEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC---------ccccceEEEEec
Confidence 999993 444443 567888999999887 67799999999999999999877655321 344789999999
Q ss_pred cCC--CEEEEEeCCccEEEEEccCCCcc-----cccCCCCCcEEEEEECCCCCeEEEec-CCCcEE-EEe
Q 012699 396 VNG--RRLLVTSGSVRAPIYQVRGHASG-----MRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQ-VMS 456 (458)
Q Consensus 396 ~~g--~~l~~~~~~~~i~i~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~-iw~ 456 (458)
|.- +.|+++-.+| .+|-+.+..... .....|.+-+..-.|......||||+ .|..++ +|-
T Consensus 263 p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred chhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 943 3444444444 666666544322 12225777777778855556788876 677755 773
No 249
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.2e-12 Score=111.04 Aligned_cols=264 Identities=13% Similarity=0.217 Sum_probs=165.7
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEE-----EcCCCcEEEEEcCCC
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLI-----GTADGGIKAWNVDAK 224 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~ 224 (458)
++..|++|..+.|- -..+.+.+|+..+.... ....+...|..+.++|. ....+++ .+.-+.+++|.....
T Consensus 129 W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~---~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI---QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhhh-hhcceEEEEecCCccce---eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 68889988754332 22467999998774332 23345677888999865 2333443 344568999987632
Q ss_pred ceeeeccCCCC-CCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 225 RVVCDLNTTDA-FPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 225 ~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
.....+....- ...-..+.|++-+.-|+ .++.+- +.....-.+..++++.+++.....-.+ ...++|.++.|+
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdV--Dktn~SYYGEq~Lyll~t~g~s~~V~L---~k~GPVhdv~W~ 279 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDV--DKTNASYYGEQTLYLLATQGESVSVPL---LKEGPVHDVTWS 279 (566)
T ss_pred cccchhhhccccccceeEEEeccCCceEEEEEEEee--cCCCccccccceEEEEEecCceEEEec---CCCCCceEEEEC
Confidence 22111111000 01223577887777332 222221 111122233458888888833333322 235789999999
Q ss_pred cCCCEEEE--EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCC
Q 012699 303 HNGKILAA--SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 303 ~~~~~l~~--~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
|+++-+++ |-.-..+.+||++ +.++..+. +++=+++-|+|.|++++.++- -|.|-+||+.+.+.+...
T Consensus 280 ~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~---- 352 (566)
T KOG2315|consen 280 PSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF---- 352 (566)
T ss_pred CCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc----
Confidence 99987655 5567789999987 66776654 678889999999999988776 578999999986543321
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
....-+-+.|+|||+++++++. |+.++||+..+......... .....+.|-|-
T Consensus 353 -------~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~--sEL~qv~W~P~ 411 (566)
T KOG2315|consen 353 -------KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFK--SELLQVEWRPF 411 (566)
T ss_pred -------ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhh--HhHhheeeeec
Confidence 1122356899999999999875 57899999987643222221 14666777653
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.6e-12 Score=113.62 Aligned_cols=194 Identities=19% Similarity=0.330 Sum_probs=156.1
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccC-CCceEEEEEe------c-------------CCCeEEEEEcCCCc
Q 012699 156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC-GTEIMSLEWE------C-------------KSDRLLLIGTADGG 215 (458)
Q Consensus 156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~------~-------------~~~~~l~~~~~dg~ 215 (458)
.|...++|....||.+++|+...++.........+ .+...+..|. | .+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999987765432222221 2233334442 1 34567888999999
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
|.+|++..++....+....+++.|.++.++.+-..+.+++.+ +.+..|+....+..+... ..+..
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-------------~~v~~~~~~~~~~~~~~~--~~~~~ 146 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-------------LKVVYILEKEKVIIRIWK--EQKPL 146 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-------------eeEEEEecccceeeeeec--cCCCc
Confidence 999999999999999988898999999999999999999988 599999999988888775 45567
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC-----CCEEEEec-CCCeEEEEeccC
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD-----ETSIFSLG-SDGKIIEWSLQN 366 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~dg~i~iwd~~~ 366 (458)
+.+++++||++.+++++ +.|++||+++++.+..|.+|.++|+++.|-.+ |.++.++. .+..+.+|-+..
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 89999999999999886 57999999999999999999999999999776 66666543 466688887765
No 251
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-12 Score=108.03 Aligned_cols=283 Identities=17% Similarity=0.219 Sum_probs=176.2
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC---CCcc------------ccccCCCceEEEEEecC-CCeEEEEE
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP---ASRN------------ATIYCGTEIMSLEWECK-SDRLLLIG 210 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~---~~~~------------~~~~~~~~v~~~~~~~~-~~~~l~~~ 210 (458)
..-|.++.|...|.+||||..+|.|.++.-..... .... ....-...|..+.|.++ +...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45688999999999999999999999996432221 0000 01112345888899743 34567778
Q ss_pred cCCCcEEEEEcCCCceeee---ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699 211 TADGGIKAWNVDAKRVVCD---LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL 287 (458)
Q Consensus 211 ~~dg~i~~wd~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~ 287 (458)
+.|.+|++|.+........ +........+..+..-. .+..+ .+. ...+.+.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~------~~~~~--------------~~v-----ea~prRv~ 159 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPV------EGRHD--------------LEV-----EASPRRVY 159 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeecee------ecccc--------------cee-----eeeeeeec
Confidence 8999999999875443220 11111111222221110 00000 000 01223333
Q ss_pred ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCC-----CCCeEEEEEcC-CCCEEEEecCCCe
Q 012699 288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAH-----DSAISSILFGP-DETSIFSLGSDGK 358 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~ 358 (458)
...|..-|+++.++.|...++++ .|=.|.+|+++-... +..++++ ..-|++..|+| ..+.++-.+..|+
T Consensus 160 -aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt 237 (433)
T KOG1354|consen 160 -ANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT 237 (433)
T ss_pred -cccceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc
Confidence 35788889999999999988886 477899999865322 2222333 34688999999 4567888888999
Q ss_pred EEEEeccCCCeeEEeecCCc-ccCC------CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CCC---
Q 012699 359 IIEWSLQNQGQVLWTRNCSR-FCDP------ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LPH--- 427 (458)
Q Consensus 359 i~iwd~~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~h--- 427 (458)
|++-|++............. ...+ ...-..|..+.|+++|+|+++-.. .+|++||++....+... .-|
T Consensus 238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l 316 (433)
T KOG1354|consen 238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL 316 (433)
T ss_pred EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence 99999995432221111000 0001 112345788999999999986432 67999999655444332 222
Q ss_pred ---------CCcE---EEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 428 ---------GAAI---TTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 428 ---------~~~v---~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+.| ..++|+-++..++||+....++++++
T Consensus 317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 2222 45889999999999999999999985
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=3.3e-12 Score=118.72 Aligned_cols=235 Identities=17% Similarity=0.184 Sum_probs=148.0
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..|.++|....... ....+...+....|+ +++++|+....+ ..|++||+.+++........ ..+..+.|+
T Consensus 170 ~~l~~~d~~g~~~~---~l~~~~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~---~~~~~~~~s 242 (417)
T TIGR02800 170 YELQVADYDGANPQ---TITRSREPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP---GMNGAPAFS 242 (417)
T ss_pred ceEEEEcCCCCCCE---EeecCCCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC---CCccceEEC
Confidence 35777777544332 223344568888999 667777766543 47999999988654332221 345678999
Q ss_pred CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeC
Q 012699 246 PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDM 322 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~ 322 (458)
|+++.++...... +...|.+||+.++...... .+........|+|+|+.|+..+.. + .|+++|+
T Consensus 243 pDg~~l~~~~~~~----------~~~~i~~~d~~~~~~~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 243 PDGSKLAVSLSKD----------GNPDIYVMDLDGKQLTRLT---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCEEEEEECCC----------CCccEEEEECCCCCEEECC---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 9999776543221 1137899999886654332 232334567899999988766543 3 6888888
Q ss_pred CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 323 SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
.+++. ..+..+........|+|++++++.++.++ .|.+||+.+....... . ........|+|||+
T Consensus 310 ~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-------~----~~~~~~p~~spdg~ 377 (417)
T TIGR02800 310 DGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-------D----TGLDESPSFAPNGR 377 (417)
T ss_pred CCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-------C----CCCCCCceECCCCC
Confidence 76654 34444556677889999999999888765 7889998764321110 0 01123468999999
Q ss_pred EEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699 400 RLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDW 436 (458)
Q Consensus 400 ~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~ 436 (458)
+|+..+.++ .+++.+..+.. ...+..+.+.+..++|
T Consensus 378 ~l~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 378 MILYATTRGGRGVLGLVSTDGRF-RARLPLGNGDVREPAW 416 (417)
T ss_pred EEEEEEeCCCcEEEEEEECCCce-eeECCCCCCCcCCCCC
Confidence 998877653 45666655432 2223223444554444
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.7e-11 Score=107.61 Aligned_cols=278 Identities=10% Similarity=0.174 Sum_probs=193.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----------CCcEEE
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----------DGGIKA 218 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------dg~i~~ 218 (458)
-+-+.|||.|.||+|--.-| |.+|--.+-... ... .+..|.-+.|+ |+.++|++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~---~RF-~Hp~Vq~idfS-P~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRI---QRF-YHPGVQFIDFS-PNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHH---Hhc-cCCCceeeecC-CccceEEEecCCccccCcccCCCceEEE
Confidence 35689999999999987766 889954433322 222 34567889999 78899998653 257999
Q ss_pred EEcCCCceeeeccCCCCCCce-eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSV-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
||+.+|.....+........+ .-..|+.|+++++....+ .|.||+..+..++..-.+ ....|.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--------------sisIyEtpsf~lld~Ksl--ki~gIr 350 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--------------SISIYETPSFMLLDKKSL--KISGIR 350 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccc--------------eEEEEecCceeeeccccc--CCcccc
Confidence 999999988887764332333 347899999999988776 999999877554433222 224588
Q ss_pred EEEEccCCCEEEEEec-----CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec----------CCCeEEEE
Q 012699 298 SLCFNHNGKILAASAV-----DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG----------SDGKIIEW 362 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 362 (458)
...|+|.+.+||.=.. -..+.+-.+.+++.+++-.-|.-.=..+-|..+|.+|+.-- .=..+.|+
T Consensus 351 ~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIf 430 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIF 430 (698)
T ss_pred CcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEE
Confidence 8999999988886432 24677778888877777666655556678888888887432 12235666
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccC--CCCCcEEEEEEC
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTL--PHGAAITTVDWH 437 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~ 437 (458)
.++....+... ......+...+|-|.|..+++-+.+ .++.+|.+++......+. -.....+.+.|+
T Consensus 431 rireKdIpve~---------velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfws 501 (698)
T KOG2314|consen 431 RIREKDIPVEV---------VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWS 501 (698)
T ss_pred EeeccCCCcee---------eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEc
Confidence 66654433322 2345568899999999988877664 578999888432222222 123567889999
Q ss_pred CCCCeEEEe---cCCCcEEEEeCC
Q 012699 438 PTLPMFLTG---SADHSVQVMSLS 458 (458)
Q Consensus 438 ~~~~~l~s~---~~dg~v~iw~l~ 458 (458)
|.|++++.+ |..|.+..+|.+
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred CCCcEEEEEEecccccceEEEecc
Confidence 999987765 457888888864
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.7e-11 Score=113.98 Aligned_cols=237 Identities=15% Similarity=0.169 Sum_probs=148.3
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-C--CcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-D--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (458)
.|.++|.+..... ....+...+....|+ ++++.|+..+. + ..|.+||+.+++........ .......|+|
T Consensus 180 ~l~~~d~~g~~~~---~l~~~~~~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARAV---TLLQSREPILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCce---EEecCCCceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECC
Confidence 4777777655432 223445678899999 56666655443 3 36899999988754432222 2345689999
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCC
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMS 323 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~ 323 (458)
+++.++...... +...|.++|+.+++... +. .+........|+|+|+.|+..+. +| .|+++|+.
T Consensus 253 DG~~la~~~~~~----------g~~~Iy~~d~~~~~~~~-lt--~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 253 DGSKLAFVLSKD----------GNPEIYVMDLASRQLSR-VT--NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CCCEEEEEEccC----------CCceEEEEECCCCCeEE-cc--cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 999887543321 01378899999876544 22 23344567889999998876654 33 68888887
Q ss_pred CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-C--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 324 AGLQITGWPAHDSAISSILFGPDETSIFSLGSD-G--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 324 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+++... +...........|+|+|++|+..+.+ + .|.+||+.++...... .. . ......|+|||+.
T Consensus 320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-------~~-~---~~~~p~~spdg~~ 387 (430)
T PRK00178 320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-------DT-S---LDESPSVAPNGTM 387 (430)
T ss_pred CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-------CC-C---CCCCceECCCCCE
Confidence 776433 22222334457899999998876653 3 4888898875432211 00 1 1123589999999
Q ss_pred EEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 401 LLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 401 l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
++..+.+ ..++++++.+... ..+..+.+.+...+|+|-
T Consensus 388 i~~~~~~~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 388 LIYATRQQGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEEecCCceEEEEEECCCCce-EECcCCCCCcCCCccCCC
Confidence 9887754 3577777765432 233344566777888874
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-11 Score=114.82 Aligned_cols=237 Identities=14% Similarity=0.141 Sum_probs=144.9
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (458)
.+.++|.+..... ........+....|+ ++++.|+..+ .++ .|.+||+.+++........ .......|+|
T Consensus 199 ~l~i~d~dG~~~~---~l~~~~~~~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNEQ---MLLRSPEPLMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCce---EeecCCCcccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECC
Confidence 5666776654432 223345678889999 5666665543 333 5888999887754322221 2344689999
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCC
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMS 323 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~ 323 (458)
+++.++...... +...|.++|+.+++..... .+.......+|+|||+.|+..+. ++ .|+++|+.
T Consensus 272 DG~~La~~~~~~----------g~~~Iy~~dl~tg~~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 272 DGKKLALVLSKD----------GQPEIYVVDIATKALTRIT---RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred CCCEEEEEEeCC----------CCeEEEEEECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 999887654321 1136888899887654422 23344577899999998876654 33 57777887
Q ss_pred CCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 324 AGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 324 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+++... +..........+|+|||++|+..+. ++ .|.++|+.++...... .. . ......|+|||+.
T Consensus 339 ~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-------~~-~---~d~~ps~spdG~~ 406 (448)
T PRK04792 339 SGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT-------ST-R---LDESPSVAPNGTM 406 (448)
T ss_pred CCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc-------CC-C---CCCCceECCCCCE
Confidence 766433 2222233345789999999887655 34 3555677655322110 00 0 1123479999999
Q ss_pred EEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 401 LLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 401 l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
|+..+.+ + .+++++.++. ....+..+.+.+...+|+|-
T Consensus 407 I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 407 VIYSTTYQGKQVLAAVSIDGR-FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred EEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCCC
Confidence 8876654 3 4777777544 33334445567788888873
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=8.8e-13 Score=123.92 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=182.5
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEe----cCCCeEEEEEcCCCcEEEEEc
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE----CKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~~wd~ 221 (458)
|-+++++..+-. ++|+.|. .-.+.+||+..+..+...... +..++. +. +-.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~-~~~~~H---~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQS-KILEVH---RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhh-cccccc---cccccceeccceEEEEEeecceeecch
Confidence 345555666544 4666553 457999999887654321111 111111 00 011234455444333333222
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--cEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP--AITSL 299 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~i~~~ 299 (458)
..... ..+ ...+....+......++....+ +.+.+||...+.....+......- ...-+
T Consensus 79 ~~~~~-~~~-----s~wi~g~~l~~e~k~i~l~~~~-------------ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~ 139 (967)
T KOG0974|consen 79 SNQII-ERF-----SDWIFGAKLFEENKKIALVTSR-------------NSLLIRDSKNSSVLSKIQSDERCTLYSSLII 139 (967)
T ss_pred hhhhh-hhc-----cccccccchhhhcceEEEEEcC-------------ceEEEEecccCceehhcCCCceEEEEeEEEE
Confidence 11111 000 0223334444555566665555 399999998776665553222111 11223
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
-++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+.||+++++.|+|.++++|++.+.+...
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------- 211 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------- 211 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--------
Confidence 456677789999999999999987444334688999999999999999999999999999999999875432
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.....|...+..+.|.|+ .+++++.|-+.++|+.+... +..+.+|. ..++.++..++...++|++.||.+++|++
T Consensus 212 ~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 212 CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 234578889999999999 99999999999999776653 33555665 57999999999999999999999999986
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.52 E-value=2.1e-10 Score=100.05 Aligned_cols=266 Identities=9% Similarity=0.054 Sum_probs=162.7
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc---------CCCcEEEEEcCCCceeeeccCCCC----
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT---------ADGGIKAWNVDAKRVVCDLNTTDA---- 235 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~---- 235 (458)
++|.+.|..+.+.+.. ...+.....+ ++|.+..+.++.+ .+..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~---i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM---TDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEE---EEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 7899999988765532 2222222334 7744444444445 578999999999999988876532
Q ss_pred -CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 236 -FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 236 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
......++++|+|++++....+.. +.+.+.|+.+++.+..+..... ..-...+++..+ +-+.|
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~-----------~~V~VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~--~~~~D 166 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPS-----------PAVGVVDLEGKAFVRMMDVPDC---YHIFPTANDTFF--MHCRD 166 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCC-----------CEEEEEECCCCcEEEEEeCCCC---cEEEEecCCccE--EEeec
Confidence 123447899999999987764411 5999999999999998875331 222233322222 22345
Q ss_pred CeEEEEeCCC-Cce-eeeee-CCC--CCeEE-EEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CC
Q 012699 315 GMIHMFDMSA-GLQ-ITGWP-AHD--SAISS-ILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PE 383 (458)
Q Consensus 315 g~i~v~d~~~-~~~-~~~~~-~~~--~~v~~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~ 383 (458)
|......+.+ ++. ....+ .+. .++.. -.|.+ +|++++.... |+|.+.|+...+..... ....+.. ..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-AIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-eeeeccccccccc
Confidence 5444433322 221 11111 011 11000 03455 8887777666 99999997654322111 1001100 01
Q ss_pred CCCCceeEEEEccCCCEEEEEe----------CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEec-CCCc
Q 012699 384 SSKSCRHEMALDVNGRRLLVTS----------GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGS-ADHS 451 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~----------~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~dg~ 451 (458)
-.......++++|+++.+++.. ..+.|.++|..+.+.+..+. -...+..++++||++ +|++.. .++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 1334445599999999999853 22579999998886665544 245899999999999 777665 6788
Q ss_pred EEEEeC
Q 012699 452 VQVMSL 457 (458)
Q Consensus 452 v~iw~l 457 (458)
|.+.|.
T Consensus 324 VsViD~ 329 (352)
T TIGR02658 324 LYIFDA 329 (352)
T ss_pred EEEEEC
Confidence 999986
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.3e-13 Score=120.88 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=196.9
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
.+..+.||+..|+.++--.+.+.+++++.|++|++|.++.... ........|..+|.++.|- .+.+++++ -|
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-ADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-eccceeee--cc
Confidence 4557889999999998877778899999999999999864321 1223445577889999998 56666655 47
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEEe-ecccCCCCcceeeccceeEEEEECCCCceeEEeecC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSA-AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG 290 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~ 290 (458)
|.|.+||.--++++..+......+.+..+..-++ ...++.+ +.. .+++++|.+..+....++..
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae-------------STVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE-------------STVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch-------------hhheeeecccccceeeEEec
Confidence 8899999988887765544433355555555554 3334333 333 49999999998877766543
Q ss_pred ---CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE-EeccC
Q 012699 291 ---EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE-WSLQN 366 (458)
Q Consensus 291 ---~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~ 366 (458)
+....+.+++..+.|++++++-.+|.|.+.|.++|+.+..++..+-....++- |....|+....|..+.+ |-..+
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcC
Confidence 23356899999999999999999999999999999999888766655555554 56667887778888888 87665
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc----cccc--CCCCCcEEEEEECCCC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS----GMRT--LPHGAAITTVDWHPTL 440 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~----~~~~--~~h~~~v~~~~~~~~~ 440 (458)
+.........+ ..... +-.-|..|+++...+.+.+|.-..... +.++ ....+..++++--|-+
T Consensus 950 gimh~q~kppp------epahf-----lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN 1018 (1034)
T KOG4190|consen 950 GIMHLQDKPPP------EPAHF-----LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN 1018 (1034)
T ss_pred CeeeeccCCCC------cchhh-----hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc
Confidence 43222111100 00000 112345566666666677774322111 1111 1345678889988988
Q ss_pred CeEEEecCCCcEEE
Q 012699 441 PMFLTGSADHSVQV 454 (458)
Q Consensus 441 ~~l~s~~~dg~v~i 454 (458)
.-+..|.+.|.|.+
T Consensus 1019 ~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1019 CAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhccCCCCceee
Confidence 87888999998875
No 259
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=8.8e-12 Score=115.86 Aligned_cols=208 Identities=14% Similarity=0.119 Sum_probs=137.1
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
..|.++|........ +.... ..+....|+|+++.++...... +...|++||+.+++...... ..
T Consensus 170 ~~l~~~d~~g~~~~~-l~~~~--~~~~~p~~Spdg~~la~~~~~~----------~~~~i~v~d~~~g~~~~~~~---~~ 233 (417)
T TIGR02800 170 YELQVADYDGANPQT-ITRSR--EPILSPAWSPDGQKLAYVSFES----------GKPEIYVQDLATGQREKVAS---FP 233 (417)
T ss_pred ceEEEEcCCCCCCEE-eecCC--CceecccCCCCCCEEEEEEcCC----------CCcEEEEEECCCCCEEEeec---CC
Confidence 357888876444332 22222 4578889999999998876432 11389999999876654332 23
Q ss_pred CcEEEEEEccCCCEEEEE-ecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCC
Q 012699 294 PAITSLCFNHNGKILAAS-AVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQ 367 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~ 367 (458)
..+.+++|+|+|+.|+.. +.++ .|++||+.+++. ..+..+........|+|+|+.|+..+. ++ .|.++|+.+.
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred CCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 446678999999877654 4343 589999887654 344445555567899999998876654 33 5777777654
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 444 (458)
+.... ...........|+|+|++|+.++.++ .|+++|+.+... ..+. ........+|+|+++.|+
T Consensus 313 ~~~~l----------~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-~~~~~~~p~~spdg~~l~ 380 (417)
T TIGR02800 313 EVRRL----------TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT-DTGLDESPSFAPNGRMIL 380 (417)
T ss_pred CEEEe----------ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc-CCCCCCCceECCCCCEEE
Confidence 32111 11223456789999999999988765 788999877432 2222 222345678999999888
Q ss_pred EecCCC
Q 012699 445 TGSADH 450 (458)
Q Consensus 445 s~~~dg 450 (458)
..+.++
T Consensus 381 ~~~~~~ 386 (417)
T TIGR02800 381 YATTRG 386 (417)
T ss_pred EEEeCC
Confidence 776654
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.6e-11 Score=114.12 Aligned_cols=214 Identities=14% Similarity=0.174 Sum_probs=136.5
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
.|.++|.+.+.... +.... ..+....|+|+++.++..+.... ...|.+||+.+++....... ..
T Consensus 180 ~l~~~d~~g~~~~~-l~~~~--~~~~~p~wSpDG~~la~~s~~~~----------~~~l~~~~l~~g~~~~l~~~---~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVT-LLQSR--EPILSPRWSPDGKRIAYVSFEQK----------RPRIFVQNLDTGRREQITNF---EG 243 (430)
T ss_pred EEEEECCCCCCceE-EecCC--CceeeeeECCCCCEEEEEEcCCC----------CCEEEEEECCCCCEEEccCC---CC
Confidence 47777877654332 22222 46788999999999887664321 13799999998776553322 23
Q ss_pred cEEEEEEccCCCEEEE-EecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCC
Q 012699 295 AITSLCFNHNGKILAA-SAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQG 368 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~ 368 (458)
.....+|+|+|+.|+. ...+| .|+++|+.+++. ..+..+........|+|||+.|+..+. ++ .|.++|+.++.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3557899999998874 44444 688899987764 345555556677899999998776654 33 47777776553
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
...... .........|+|||++|+..+.. + .|.++|+.++... . ..+........|+|+|++++.
T Consensus 323 ~~~lt~----------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~-lt~~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 323 AERVTF----------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I-LTDTSLDESPSVAPNGTMLIY 390 (430)
T ss_pred EEEeec----------CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-E-ccCCCCCCCceECCCCCEEEE
Confidence 221110 01123457899999999887753 2 5888898876432 2 212222335689999998776
Q ss_pred ecCC-Cc--EEEEeC
Q 012699 446 GSAD-HS--VQVMSL 457 (458)
Q Consensus 446 ~~~d-g~--v~iw~l 457 (458)
.+.+ |. +.++++
T Consensus 391 ~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 391 ATRQQGRGVLMLVSI 405 (430)
T ss_pred EEecCCceEEEEEEC
Confidence 5543 33 444443
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.50 E-value=1.1e-11 Score=107.66 Aligned_cols=277 Identities=14% Similarity=0.204 Sum_probs=189.8
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----------
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG----------- 214 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----------- 214 (458)
-.-++..++|||.|.+|++.... -|.+|.-...... .......|..+.|+ +++.+|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l----~~~~~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKL----VRFRHPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPF 104 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhhe----eeeecCCceecccC-cccceeeeeccCCccChhhccCCc
Confidence 45578899999999999987664 4889987665422 22335678889999 7888888854433
Q ss_pred ----cEEEEEcCCCceeeeccCCCCCCcee-eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699 215 ----GIKAWNVDAKRVVCDLNTTDAFPSVL-DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 215 ----~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
.+.+||+.++..+..+.........+ -+.|+-+.++++-...+ .+.++++ +..... ...
T Consensus 105 ~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~--------------sl~i~e~-t~n~~~-~p~ 168 (561)
T COG5354 105 TSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS--------------SLYIHEI-TDNIEE-HPF 168 (561)
T ss_pred cccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC--------------eEEEEec-CCcccc-Cch
Confidence 59999999999998888765432244 67788888877665443 8999996 322211 111
Q ss_pred -CCCCCcEEEEEEccCC--CEEEE-----EecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-------
Q 012699 290 -GEDPPAITSLCFNHNG--KILAA-----SAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG------- 354 (458)
Q Consensus 290 -~~~~~~i~~~~~~~~~--~~l~~-----~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------- 354 (458)
.-....+....|+|.+ ..|+. ...++.+++|.+..+..+.+..-....=..+.|++.|++|..--
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 1113568889999963 34443 45678999999987766655443344445788999998776321
Q ss_pred ----CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccCCCC
Q 012699 355 ----SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTLPHG 428 (458)
Q Consensus 355 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~~h~ 428 (458)
.+..++++++....... .....++|..++|.|.++.+++.++ .-.+.++|+++. .++....
T Consensus 249 KsyfgesnLyl~~~~e~~i~V----------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe 315 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPV----------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPE 315 (561)
T ss_pred cceeccceEEEEeecccccce----------eccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCC
Confidence 13557788877432211 1145678999999999998887763 567888998876 3444445
Q ss_pred CcEEEEEECCCCCeEEEecCC---CcEEEEeC
Q 012699 429 AAITTVDWHPTLPMFLTGSAD---HSVQVMSL 457 (458)
Q Consensus 429 ~~v~~~~~~~~~~~l~s~~~d---g~v~iw~l 457 (458)
..=+.+.|+|.+++++.++-| |.+-+|+.
T Consensus 316 ~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 316 QKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cccccccccCcccEEEEecCCccccceEEecc
Confidence 566778889999988887765 56777764
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.3e-11 Score=111.70 Aligned_cols=218 Identities=13% Similarity=0.139 Sum_probs=132.3
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE--EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV--SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
..|.+.|.+.+.... +.... .......|+|+|+.++ ..+... +...|.+.++.+++........+
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~--~~~~sP~wSPDG~~~~~~y~S~~~----------g~~~I~~~~l~~g~~~~lt~~~g 231 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEH--SLSITPTWMHIGSGFPYLYVSYKL----------GVPKIFLGSLENPAGKKILALQG 231 (428)
T ss_pred ceEEEEcCCCCCceE-cccCC--CCcccceEccCCCceEEEEEEccC----------CCceEEEEECCCCCceEeecCCC
Confidence 367777776655433 22222 3567789999997532 222211 11488899998877665544333
Q ss_pred CCCcEEEEEEccCCCEEEEEec-CC----eEEEEeCCCC---ceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEE
Q 012699 292 DPPAITSLCFNHNGKILAASAV-DG----MIHMFDMSAG---LQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEW 362 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~-dg----~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 362 (458)
.....+|+|||+.|+..+. +| .+..|++..+ +.......+.......+|+|||+.|+..+ .+|...+|
T Consensus 232 ---~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 232 ---NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred ---CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 3456899999998886553 22 3444676642 33333223233456789999999877665 46655555
Q ss_pred ec--cCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699 363 SL--QNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDW 436 (458)
Q Consensus 363 d~--~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~ 436 (458)
.+ ... ..... + ......+....|||||+.|+..+.+ ..|++||+.+++. ..+......+....|
T Consensus 309 ~~~~~~~g~~~~~------l---t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~w 378 (428)
T PRK01029 309 IMQIDPEGQSPRL------L---TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSW 378 (428)
T ss_pred EEECcccccceEE------e---ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEE
Confidence 44 321 11110 0 0122345678999999999877653 4699999987754 233333346778999
Q ss_pred CCCCCeEEEe-cC--CCcEEEEeC
Q 012699 437 HPTLPMFLTG-SA--DHSVQVMSL 457 (458)
Q Consensus 437 ~~~~~~l~s~-~~--dg~v~iw~l 457 (458)
+|||+.|+.. .. ...|.+|++
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEEC
Confidence 9999977643 32 345777775
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.2e-11 Score=112.00 Aligned_cols=282 Identities=12% Similarity=0.185 Sum_probs=182.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
.-+++.||.+.|.-+.|+.+.+.|-|...+|.|.+|-+-.+............+-|.+++|+ .++..+.....||.|.+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEE
Confidence 34578999999999999999999999999999999998887765444444556789999999 88999999999999988
Q ss_pred EEcCCCceeee-ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-----eEEee----
Q 012699 219 WNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-----MTVLP---- 288 (458)
Q Consensus 219 wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-----~~~~~---- 288 (458)
=.++.++.-.. ++. .....+.|++|...++.+-.+ |.+.+||.+..-. .....
T Consensus 142 GsvdGNRIwgKeLkg----~~l~hv~ws~D~~~~Lf~~an-------------ge~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKG----QLLAHVLWSEDLEQALFKKAN-------------GETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred Eeeccceecchhcch----heccceeecccHHHHHhhhcC-------------CcEEEecccccHHHhhhhceEEeeeee
Confidence 77776543211 111 124568899998887777666 5899998764211 11111
Q ss_pred cCCCCCcEEEEEEc--------cCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--
Q 012699 289 LGEDPPAITSLCFN--------HNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDG-- 357 (458)
Q Consensus 289 ~~~~~~~i~~~~~~--------~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 357 (458)
+...+..|..+.|. |+...|+++..+|.+.+-.-.+ ..++. +. ..-.+..+.|+++|..|+.++.+.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv-~d-tgm~~vgakWnh~G~vLAvcG~~~da 282 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV-VD-TGMKIVGAKWNHNGAVLAVCGNDSDA 282 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE-Ee-cccEeecceecCCCcEEEEccCcccc
Confidence 11122235556664 4778999999999988876544 33332 22 235688899999999999998753
Q ss_pred -------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----------------------
Q 012699 358 -------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----------------------- 407 (458)
Q Consensus 358 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----------------------- 407 (458)
.|.+|..- .+...........|++++|-..|-.+|.+-..
T Consensus 283 ~~~~d~n~v~Fysp~----------G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~ 352 (1189)
T KOG2041|consen 283 DEPTDSNKVHFYSPY----------GHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYV 352 (1189)
T ss_pred cCccccceEEEeccc----------hhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEeeeEEEEE
Confidence 23333322 11222223445667888887766555543221
Q ss_pred --------ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 408 --------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 408 --------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
-.|.+||..+.+...+... +..+++|..+--.|++-..||.+.
T Consensus 353 y~~~e~p~y~i~Fwdtk~nek~vK~V~---~~~~~a~~~ehCvL~~~~d~~~i~ 403 (1189)
T KOG2041|consen 353 YQKEELPQYGIMFWDTKTNEKTVKTVT---HFENMAFYREHCVLINRQDDGVIP 403 (1189)
T ss_pred EccCCCcceEEEEEecccChhhhhhhc---ceeehheecccEEEEeccccCCCc
Confidence 1345566655544333332 344566665555666656666554
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2e-11 Score=112.13 Aligned_cols=245 Identities=13% Similarity=0.100 Sum_probs=146.2
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCe--EEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeee
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR--LLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKC 244 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 244 (458)
..|.+.|.+...... ..........-.|+|+... ++++...+| .|.+.++.+++........ .......|
T Consensus 165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~---g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ---GNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC---CCccceEE
Confidence 356667776654432 1123345567789954333 333444444 5778888877654433222 23456899
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCe--EE
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGM--IH 318 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~ 318 (458)
+|||+.++........ .+..+..|++..+ +...... .........+|+|||+.|+..+ .+|. |+
T Consensus 239 SPDG~~Laf~s~~~g~--------~di~~~~~~~~~g~~g~~~~lt~--~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 239 SPRKKLLAFISDRYGN--------PDLFIQSFSLETGAIGKPRRLLN--EAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCCCEEEEEECCCCC--------cceeEEEeecccCCCCcceEeec--CCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 9999988876542100 0124455777653 2222221 2222346789999999887665 4564 45
Q ss_pred EEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 319 MFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 319 v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
++++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++..... .....+....|
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt----------~~~~~~~~p~w 378 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT----------TSPENKESPSW 378 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc----------CCCCCccceEE
Confidence 555542 23344455555667889999999988876543 36899999876432211 11123466899
Q ss_pred ccCCCEEEEEeC---CccEEEEEccCCCcccccCCCCCcEEEEEECCCC
Q 012699 395 DVNGRRLLVTSG---SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL 440 (458)
Q Consensus 395 s~~g~~l~~~~~---~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 440 (458)
+|||+.|+.... ...++++++.+++. ..+....+.+...+|+|-.
T Consensus 379 SpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 379 AIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCCC
Confidence 999998886543 35688889877643 3333444567788888754
No 265
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.49 E-value=4.8e-10 Score=111.32 Aligned_cols=358 Identities=13% Similarity=0.115 Sum_probs=208.4
Q ss_pred cceeeeeeccCCCceeeeeecCcceEEecccccccc---------ccce--eeeec------------------------
Q 012699 25 ETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA---------TTAT--HMGSA------------------------ 69 (458)
Q Consensus 25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~---------~~~~--~~~~~------------------------ 69 (458)
..|.|+++ |||+++||..+.++++.+.......+. +.-. ..+|.
T Consensus 121 ~GI~a~~W-SPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASW-SPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEE-CCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 45999999 999999999999999888665433222 0000 01111
Q ss_pred --------cCCceeeeeCCccceeEeeccC------CCcccccccccccCCc-ccceeeeccCCCCcCCCcceeccCCC-
Q 012699 70 --------EMGQTWASSRPALSRFATNMSG------NDSISPSKLEFEDVGA-GDIIQMFNDGLYTENGRDAQGEEDFP- 133 (458)
Q Consensus 70 --------~~~~~~~~~~~~~~~~l~~~~~------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~- 133 (458)
.+.....+.-.+|++|+|+.+. -+.+++|+-+..-... ......-+..+|.|.|..+|+....+
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~ 279 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD 279 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCC
Confidence 1223344555567788777764 2567777754211111 11122235668999999999876521
Q ss_pred --eeee---------eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc-ccccCCCceEEEEEec
Q 012699 134 --EVKV---------DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWEC 201 (458)
Q Consensus 134 --~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~ 201 (458)
.+.+ +..-.+......|..+.|++|+..||..-.|. |.+|-..+.....+. ........+..+.|+|
T Consensus 280 ~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 280 RHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred CcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 1111 22222234567899999999999999977665 999987765532221 2222334456699998
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
.+...|...+.+|.+..++..-....... ..|+.. .++.... ..+.+-.++.
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~-------------~~~~D~g~vaVIDG--------------~~lllTpf~~ 411 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPG-------------SSPNDNGTVAVIDG--------------NKLLLTPFRR 411 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEEEEecCC-------------CCccCceEEEEEeC--------------CeEEEecccc
Confidence 88888888888888877665421111100 011111 2222222 2666666654
Q ss_pred CceeE---EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--------eeeee----------CCCCCeE
Q 012699 281 WKAMT---VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--------ITGWP----------AHDSAIS 339 (458)
Q Consensus 281 ~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--------~~~~~----------~~~~~v~ 339 (458)
....+ .+.+ .-+..|.+++|++++..+++-..||.|.+|....... ...+. .....+.
T Consensus 412 a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 412 AVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred cCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 33221 1111 1246799999999988899999999999998543211 11111 1234678
Q ss_pred EEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 340 SILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
.++|..+...++....+ ..+.++++......... .........+..+...++...++.-..+|.+...+..
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~ 564 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASV------ESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSD 564 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeE------EEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecC
Confidence 88887777666655554 57888887543321111 1111223345555555555556666778877766655
Q ss_pred CC
Q 012699 417 GH 418 (458)
Q Consensus 417 ~~ 418 (458)
..
T Consensus 565 ~~ 566 (928)
T PF04762_consen 565 GE 566 (928)
T ss_pred CC
Confidence 44
No 266
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.3e-11 Score=112.57 Aligned_cols=104 Identities=14% Similarity=0.214 Sum_probs=81.4
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE---------ecCCCeEEEEeccCCCeeEEeecCC
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS---------LGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---------~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
++++|+..|+|.++|+.++.....+..|...|.++.|-...+++-. ++.-+.+.+-|++++...
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk------- 511 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK------- 511 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc-------
Confidence 6889999999999999999999999999999999999766544322 222345778888876322
Q ss_pred ccc-CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 378 RFC-DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 378 ~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
.+. .......+|..+..|..|+||+....+.-+.+||+++
T Consensus 512 ~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 512 RFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred ccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 222 1235667899999999999999999999999999854
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.47 E-value=5.6e-10 Score=97.44 Aligned_cols=240 Identities=13% Similarity=0.132 Sum_probs=143.7
Q ss_pred eCCCCCEEEEEeC----------CCcEEEEecCCCCCCCccccccC-----CCceEEEEEecCCCeEEEEEc-C-CCcEE
Q 012699 155 FSSSGNNIASASV----------DGTVRIWTYDSSTPASRNATIYC-----GTEIMSLEWECKSDRLLLIGT-A-DGGIK 217 (458)
Q Consensus 155 ~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~-~-dg~i~ 217 (458)
++||++.|+.+.. +..|.+||..+.+.......... ......++++ +++++|+... . +..+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-CCCCEEEEecCCCCCEEE
Confidence 8999998877654 78999999999887643332111 2234467888 6777777665 3 68999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-Cce-eEEeec-CCCCC
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKA-MTVLPL-GEDPP 294 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~-~~~~~~-~~~~~ 294 (458)
+.|+.+++.+.++..... ..-...+++...+.+. | |......+.+ ++. ...... .....
T Consensus 132 VvD~~~~kvv~ei~vp~~---~~vy~t~e~~~~~~~~--D-------------g~~~~v~~d~~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDC---YHIFPTANDTFFMHCR--D-------------GSLAKVGYGTKGNPKIKPTEVFHPEDE 193 (352)
T ss_pred EEECCCCcEEEEEeCCCC---cEEEEecCCccEEEee--c-------------CceEEEEecCCCceEEeeeeeecCCcc
Confidence 999999999888776431 1111111111111111 1 1222211111 110 111110 01000
Q ss_pred cE-EEEEEcc-CCCEEEEEecCCeEEEEeCCCC-----ceeeeeeC-------CCCCeEEEEEcCCCCEEEEec------
Q 012699 295 AI-TSLCFNH-NGKILAASAVDGMIHMFDMSAG-----LQITGWPA-------HDSAISSILFGPDETSIFSLG------ 354 (458)
Q Consensus 295 ~i-~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~------ 354 (458)
++ ..-.|.+ +|+++++... |.|++.|+... +....+.. ..+.+.-++++|+++.++...
T Consensus 194 ~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~ 272 (352)
T TIGR02658 194 YLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKW 272 (352)
T ss_pred ccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccc
Confidence 00 0014455 8888887665 99999996442 22222211 223445599999999888743
Q ss_pred ----CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCccccc
Q 012699 355 ----SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 355 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~~~~ 424 (458)
..+.|.++|..+.+...... ....+..++++||++ +|++.+ .++.|.++|..+.+.+..+
T Consensus 273 thk~~~~~V~ViD~~t~kvi~~i~----------vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 273 THKTASRFLFVVDAKTGKRLRKIE----------LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred cccCCCCEEEEEECCCCeEEEEEe----------CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 22579999998876554332 234588999999999 888777 4688999999988665544
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=3.7e-13 Score=118.02 Aligned_cols=249 Identities=13% Similarity=0.130 Sum_probs=163.6
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC---CceEEEEEecCCCeEEEEE-cCCC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG---TEIMSLEWECKSDRLLLIG-TADG 214 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~-~~dg 214 (458)
+..+++.|+.+|..+.|-.+-++++++ ||-|.+||.--+++.......... +.|.++.- -+..+++++ +...
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAES 851 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEeccc--Ccchheeeeccchh
Confidence 566788999999999999998888875 789999997666554322222222 23444421 144455555 6788
Q ss_pred cEEEEEcCCCceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
+++++|.+..+....++... ....+.+++..+.|+.++.+-.+ |+|.+.|.++++.+.....
T Consensus 852 TVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSn-------------Gci~~LDaR~G~vINswrp-- 916 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSN-------------GCIAILDARNGKVINSWRP-- 916 (1034)
T ss_pred hheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcC-------------CcEEEEecCCCceeccCCc--
Confidence 99999999988777665542 22458899999999999888776 6999999999988775531
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEE-EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHM-FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v-~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
-......++ .|..+.|+....|.++.+ |....+....+.+....+..-+. .-|..|++......+.+|.-......
T Consensus 917 mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYad~a~~ha 993 (1034)
T KOG4190|consen 917 MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYADSAELHA 993 (1034)
T ss_pred ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEecchhhhh
Confidence 111222232 355667777778888888 88777765555544443332221 23566777777777888753321111
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
. .......+....+..++++.-|-..-++.|++.|.|.+
T Consensus 994 ~---stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 994 E---STITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred h---hhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1 11112234456667788888887777777888887765
No 269
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=7.7e-13 Score=119.76 Aligned_cols=289 Identities=15% Similarity=0.229 Sum_probs=190.1
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCC-
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKAWNVDAK- 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~- 224 (458)
.+++..+..+|.|+-+|.++.-| +.+-|+.......+.......-.+..+.|+|.. ..+-++......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788899999999999998877 455676654433322222223457777887532 234444445555667887532
Q ss_pred ceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (458)
.....+-.+.|...++++.|+|+.+ .+++++.+. .+..||+++.....-.. ..-......++|+.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt-------------~vh~wd~rSp~~p~ys~-~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT-------------YVHAWDMRSPHRPFYST-SSWRSAASQVKWNY 168 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccc-------------cceeeeccCCCcceeee-ecccccCceeeecc
Confidence 2233444566668899999999887 566677664 99999999855433222 22234567789987
Q ss_pred CCCEEEEEecCCeEEEEeCCCC-ceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 304 NGKILAASAVDGMIHMFDMSAG-LQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 304 ~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
....+.+.+....|++||++.+ .++..+++|...|+.++|.. ....+.+++.|++|++||..+....- ..
T Consensus 169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~--------~~ 240 (1081)
T KOG0309|consen 169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES--------KR 240 (1081)
T ss_pred cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc--------ce
Confidence 5555555567778999999874 67888899999999999976 33468899999999999998642211 11
Q ss_pred CCCCCCceeEEEEccCCC--EEEEEeCCccEEEEEcc----------CCCcccccCCCCCcEEEEEECCCC--------C
Q 012699 382 PESSKSCRHEMALDVNGR--RLLVTSGSVRAPIYQVR----------GHASGMRTLPHGAAITTVDWHPTL--------P 441 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~--~l~~~~~~~~i~i~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~--------~ 441 (458)
......++..-.+-|-|+ ++.---+++.+.+++-+ ....+..+.||.+.|..+.|-..+ +
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 123344566666666443 33322233344444332 233456677999999888874422 2
Q ss_pred --eEEEecCCCcEEEEeCC
Q 012699 442 --MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 442 --~l~s~~~dg~v~iw~l~ 458 (458)
.|+|-+.|..+|+|-++
T Consensus 321 dfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ceeEEEeecCCceEeeecc
Confidence 79999999999999874
No 270
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6e-11 Score=109.90 Aligned_cols=214 Identities=15% Similarity=0.104 Sum_probs=132.1
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
.|.++|........ +.... ..+....|+|+++.++..+... +...|.++|+.+++........ .
T Consensus 199 ~l~i~d~dG~~~~~-l~~~~--~~~~~p~wSPDG~~La~~s~~~----------g~~~L~~~dl~tg~~~~lt~~~---g 262 (448)
T PRK04792 199 QLMIADYDGYNEQM-LLRSP--EPLMSPAWSPDGRKLAYVSFEN----------RKAEIFVQDIYTQVREKVTSFP---G 262 (448)
T ss_pred EEEEEeCCCCCceE-eecCC--CcccCceECCCCCEEEEEEecC----------CCcEEEEEECCCCCeEEecCCC---C
Confidence 56677776554322 22222 4678899999999888765432 1137999999887764433222 2
Q ss_pred cEEEEEEccCCCEEEE-EecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccCCC
Q 012699 295 AITSLCFNHNGKILAA-SAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQNQG 368 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~-~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~ 368 (458)
.....+|+|||+.|+. .+.+| .|+++|+.+++. ..+..+.......+|+|||+.|+..+. ++ .|.++|+.+++
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3457899999998865 45556 488889887654 444555556678899999998876554 44 46666666543
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-c--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-V--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
...... ........+|+|||++|+..+.+ + .|.++|+.++... .+... .......|+|+|+.|+.
T Consensus 342 ~~~Lt~----------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 342 VSRLTF----------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIY 409 (448)
T ss_pred EEEEec----------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEE
Confidence 221110 11112346899999999887653 3 4566777665422 22211 12234589999997776
Q ss_pred ecC-CCc--EEEEeC
Q 012699 446 GSA-DHS--VQVMSL 457 (458)
Q Consensus 446 ~~~-dg~--v~iw~l 457 (458)
.+. +|. +.++++
T Consensus 410 ~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 410 STTYQGKQVLAAVSI 424 (448)
T ss_pred EEecCCceEEEEEEC
Confidence 543 443 555553
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.8e-11 Score=110.82 Aligned_cols=280 Identities=13% Similarity=0.189 Sum_probs=194.6
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-------------ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-------------RNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
.....|+.|+.+..++|+|+.||.+++-.+.+...-. ......|...|..+.|+ .+.+.|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN-e~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN-ENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec-cccccccccCCC
Confidence 3457899999999999999999999999876543211 11234567889999999 788889999999
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
|.|.+|-+-.+.....+......+.|.+++|+.+|..+...-.|+ .|.+=.+...+... -.+.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDG-------------avIVGsvdGNRIwg-KeLkg~- 157 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDG-------------AVIVGSVDGNRIWG-KELKGQ- 157 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccC-------------CEEEEeeccceecc-hhcchh-
Confidence 999999998887766665555557899999999999998888873 44444333222111 011111
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-------eeee----eeCCCCCeEEEEEc--------CCCCEEEEec
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-------QITG----WPAHDSAISSILFG--------PDETSIFSLG 354 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~----~~~~~~~v~~~~~~--------~~~~~l~~~~ 354 (458)
....+.|++|.+.++.+-.+|.+.+||....- +... +......|..+.|. |+...|+.+-
T Consensus 158 -~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 -LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred -eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 24568899999988888889999999965321 1011 11112235556663 4788999999
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---------ccEEEEEccCCCcccccC
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---------VRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------~~i~i~~~~~~~~~~~~~ 425 (458)
..|.+.+..-.+...+... .....+....|+++|..||+++.+ +.|++|..-+. ....+.
T Consensus 237 ~nGr~QiMR~eND~~Pvv~----------dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~-i~gtlk 305 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDPEPVVV----------DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGH-IVGTLK 305 (1189)
T ss_pred cCceehhhhhcCCCCCeEE----------ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchh-heEEEe
Confidence 9999999877765544332 223457889999999999998864 35666665443 233333
Q ss_pred CCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 426 PHGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 426 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.....|++++|-..|-.+|.+- |+.|.+=
T Consensus 306 vpg~~It~lsWEg~gLriA~Av-dsfiyfa 334 (1189)
T KOG2041|consen 306 VPGSCITGLSWEGTGLRIAIAV-DSFIYFA 334 (1189)
T ss_pred cCCceeeeeEEcCCceEEEEEe-cceEEEE
Confidence 4567899999988777666553 5566553
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.44 E-value=1.1e-09 Score=94.92 Aligned_cols=175 Identities=20% Similarity=0.177 Sum_probs=129.3
Q ss_pred eCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-cEEEEEcCCCceeeeccC
Q 012699 155 FSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-GIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 155 ~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~ 232 (458)
|++ +|.+++..|. |...|.+...+..+ ...+...|.-..+. .+++-++.|..|| .+-+||.++++.......
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~i----qv~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSI----QVGKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeE----EcCCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEeeCC
Confidence 444 6888888875 66777665444332 34455667777776 5566889999999 899999999886554433
Q ss_pred CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (458)
. +.|.++..+++|+.++.+... ..+.+.|+.++.....-+ ...+-|+.++|+|+++++|.+-
T Consensus 401 l---g~I~av~vs~dGK~~vvaNdr-------------~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYaf 462 (668)
T COG4946 401 L---GNIEAVKVSPDGKKVVVANDR-------------FELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAF 462 (668)
T ss_pred c---cceEEEEEcCCCcEEEEEcCc-------------eEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEec
Confidence 3 679999999999988887765 489999999987765433 3456799999999999999876
Q ss_pred cCC----eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699 313 VDG----MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 313 ~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 354 (458)
-+| .|++||+..++.... ....+.=.+-+|.|++++|.--+
T Consensus 463 P~gy~tq~Iklydm~~~Kiy~v-TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 463 PEGYYTQSIKLYDMDGGKIYDV-TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CcceeeeeEEEEecCCCeEEEe-cCCcccccCcccCCCCcEEEEEe
Confidence 655 799999998776543 33344445678999999887554
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.44 E-value=4.9e-10 Score=113.45 Aligned_cols=248 Identities=14% Similarity=0.162 Sum_probs=161.0
Q ss_pred EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC------------CCCceeeeeecCCCCeEEEeecccCCCC
Q 012699 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD------------AFPSVLDLKCSPVEPIFVSAAASRRYGS 262 (458)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
..+++++.++.++++-..++.|+++|.... .+..+.... .......+++.+++..++.+....
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n---- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN---- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC----
Confidence 457787556778888888899999998644 333332211 112467889998887666655433
Q ss_pred cceeeccceeEEEEECCCCceeEEeecCCC---------------CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGED---------------PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGL 326 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~---------------~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~ 326 (458)
+.|+.+|+.++... .+...+. -.....++++| ++.++++.+.++.|++||..++.
T Consensus 646 --------~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 646 --------HALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred --------ceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 48999998775432 2211100 11246799999 55566666778899999987764
Q ss_pred eeeeeeCC---------------CCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecC-------CcccCC-
Q 012699 327 QITGWPAH---------------DSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNC-------SRFCDP- 382 (458)
Q Consensus 327 ~~~~~~~~---------------~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~- 382 (458)
.. .+.+. -.....|+++|+++.| ++-+.++.|++||+.++......... ..+...
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 32 22111 1235679999999854 45566789999999875432211000 000000
Q ss_pred ----CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--------------CCCCcEEEEEECCCCCeEE
Q 012699 383 ----ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--------------PHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 383 ----~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--------------~h~~~v~~~~~~~~~~~l~ 444 (458)
...-.....++++++|+++++-..+++|++||..++... .+. +.-..+..++++++|++++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 011224568999999998888888999999999765322 111 1223678999999999999
Q ss_pred EecCCCcEEEEeCC
Q 012699 445 TGSADHSVQVMSLS 458 (458)
Q Consensus 445 s~~~dg~v~iw~l~ 458 (458)
+-+.++.|++||++
T Consensus 875 aDt~Nn~Irvid~~ 888 (1057)
T PLN02919 875 ADTNNSLIRYLDLN 888 (1057)
T ss_pred EECCCCEEEEEECC
Confidence 98999999999974
No 274
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=129.29 Aligned_cols=199 Identities=14% Similarity=0.230 Sum_probs=153.8
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
++.|-..|.++.-+|...+.+||+.||.|++|....++.+........ ..|+.+.|+ ..|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~-~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFN-HQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhc-ccCCceeeeccCCceeecccC
Confidence 345667788998899999999999999999999988877654444444 789999999 778889999999999999987
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
.+.....+.+. ....++.|-. ..+++++... .++.+.+||..-......+. ..|...++++++-
T Consensus 2282 -pk~~~s~qchn--k~~~Df~Fi~--s~~~tag~s~----------d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHN--KALSDFRFIG--SLLATAGRSS----------DNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYA 2345 (2439)
T ss_pred -CcceeccccCC--ccccceeeee--hhhhccccCC----------CCCcccchhcccCcccceee-eecCCCceEEEEc
Confidence 44444444443 4566666655 4555554432 22699999976544333333 5788899999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
|..++|++|+.+|.|++||++..+.++.++. +. ...++++++..|.++||++.....
T Consensus 2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 9999999999999999999999888887765 44 566999999999999999987643
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=1.3e-08 Score=88.35 Aligned_cols=215 Identities=10% Similarity=0.046 Sum_probs=146.7
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeee-cc--CC---CCCCceeeee----ec-CCCCeEEEeecccCCCCcceeeccc
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCD-LN--TT---DAFPSVLDLK----CS-PVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~--~~---~~~~~v~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.++..++.. ..|.|.+||.++...... +. .. .....+.-.. |+ .+|.+++..+.
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-------------- 340 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-------------- 340 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec--------------
Confidence 455555543 457899999987654321 11 00 0000011111 11 24566666665
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-MIHMFDMSAGLQITGWPAHDSAISSILFGPDETS 349 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (458)
|...+.+...+-.++. ++...|.-..+..++.-++.|..|| .+-|||.++++ +..+...-+.|.++..+|+|++
T Consensus 341 GkaFi~~~~~~~~iqv----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~ 415 (668)
T COG4946 341 GKAFIMRPWDGYSIQV----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKK 415 (668)
T ss_pred CcEEEECCCCCeeEEc----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcE
Confidence 4777776665544442 3456688888887888899999999 89999998776 4555667788999999999999
Q ss_pred EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc----cEEEEEccCCCcccccC
Q 012699 350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV----RAPIYQVRGHASGMRTL 425 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~----~i~i~~~~~~~~~~~~~ 425 (458)
++.+.....+.+.|+.++...... .....-|+.+.|+|+++++|.+--+| .|+++|+.+++.. ...
T Consensus 416 ~vvaNdr~el~vididngnv~~id---------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vT 485 (668)
T COG4946 416 VVVANDRFELWVIDIDNGNVRLID---------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVT 485 (668)
T ss_pred EEEEcCceEEEEEEecCCCeeEec---------ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-Eec
Confidence 999999999999999987543221 13445689999999999999988775 6899999987433 333
Q ss_pred CCCCcEEEEEECCCCCeEEEe
Q 012699 426 PHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 426 ~h~~~v~~~~~~~~~~~l~s~ 446 (458)
...+.=.+-+|.||+++|.--
T Consensus 486 T~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred CCcccccCcccCCCCcEEEEE
Confidence 333344567899999976644
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.7e-10 Score=102.34 Aligned_cols=201 Identities=10% Similarity=0.133 Sum_probs=155.2
Q ss_pred cCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC-CceeeeeecCCCCeEEEeeccc------------CCCCcceee
Q 012699 201 CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-PSVLDLKCSPVEPIFVSAAASR------------RYGSSNIYS 267 (458)
Q Consensus 201 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 267 (458)
|+...+++....||.+++||...++....+....+. +...+..|. +.....-. .....++.+
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHHhHHHHhhccCCceEEEee
Confidence 466788999999999999999999887776654332 234444443 11111100 012234455
Q ss_pred ccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699 268 WGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE 347 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (458)
...|.|.+|+...++....+....|.+.|+++.++.+-..|.+++.|+.+..|+....+.++.++.....+.+++.+||+
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 56689999999999999999888999999999999998999999999999999999999999999989999999999999
Q ss_pred CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC-----CCEEEEEe-CCccEEEEEccC
Q 012699 348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN-----GRRLLVTS-GSVRAPIYQVRG 417 (458)
Q Consensus 348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~l~~~~-~~~~i~i~~~~~ 417 (458)
..+++++ +.|++||+++.+.... ..+|.+.|.+++|-.+ |.+++++. .+..+.+|-+..
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~---------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVIT---------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEE---------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999886 5799999998654432 3478889999999887 66666544 345577776654
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.40 E-value=2.9e-08 Score=98.93 Aligned_cols=411 Identities=11% Similarity=0.131 Sum_probs=230.3
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEe----cccccccc------ccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLS----TNSSEACA------TTATHMGSAEMGQTWASSRPALSRFATNMSGN 92 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (458)
....|..+.| -++...|+.+..+|.+.+. +....... ..|..++|+||...+++......-.+.+...+
T Consensus 74 ~~~~ivs~~y-l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQY-LADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEe-ccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 3467899999 8999988888999999988 44433221 56668889998666666544332222222111
Q ss_pred CcccccccccccCCcccceeeecc---CCCCc-CCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeC-
Q 012699 93 DSISPSKLEFEDVGAGDIIQMFND---GLYTE-NGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASV- 167 (458)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~- 167 (458)
- +.--.+...+.+....+..... -.|.- .|+..+....++.+.......+. +...-..++|-.||+++|+.+.
T Consensus 153 ~-i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 153 P-ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred E-EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 0000111111111111111100 01211 11111111112222211122334 5556678999999999988764
Q ss_pred --C---CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCC--CCCC
Q 012699 168 --D---GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTT--DAFP 237 (458)
Q Consensus 168 --d---g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~--~~~~ 237 (458)
. ..+|||+-+ +..... .....+--.+++|. |.|+++++... ...|.+|.-+ |-....+... ....
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~st--SE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQST--SEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEE 305 (928)
T ss_pred cCCCceeEEEEECCC-ceEEec--cccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCc
Confidence 2 579999865 332211 11112223567898 77888888765 3456667643 3322223222 2335
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccC-CCEEEEEecC
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHN-GKILAASAVD 314 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 314 (458)
.+..+.|++++..|+..-.+ .|.+|-..+.... +.+.+... ..+..+.|+|. ...|.+.+.+
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~--------------~vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLED--------------RVQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred eeeEEEECCCCCEEEEEecC--------------CceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEEecC
Confidence 79999999999999998765 7999998876533 33333322 33455999995 4457777766
Q ss_pred CeEEEEeCC----CCc--------eeeeee-----------------------CCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699 315 GMIHMFDMS----AGL--------QITGWP-----------------------AHDSAISSILFGPDETSIFSLGSDGKI 359 (458)
Q Consensus 315 g~i~v~d~~----~~~--------~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i 359 (458)
|.+..++.. .+. .+..+. .-..+|.+++|++++..+++-..||.+
T Consensus 371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 766665532 110 011110 124689999999998889999999999
Q ss_pred EEEeccCCCee-----EEeecCCc----ccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCccc---cc
Q 012699 360 IEWSLQNQGQV-----LWTRNCSR----FCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGM---RT 424 (458)
Q Consensus 360 ~iwd~~~~~~~-----~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~---~~ 424 (458)
.+|........ ........ ..........+..++|..+..++++...+ ..+.++++....... ..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 530 (928)
T PF04762_consen 451 SIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESS 530 (928)
T ss_pred EEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEE
Confidence 99986543221 00000000 11122235567889998888877776664 678888874432221 11
Q ss_pred CCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..-...+..+...++...++.-..||.+...+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~ 562 (928)
T PF04762_consen 531 TEVDGVVLIISSSPDSGSLYIQTNDGKVFQLS 562 (928)
T ss_pred eccCceEEEEeeCCCCcEEEEEECCCEEEEee
Confidence 22345566666666655455556677776443
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=121.60 Aligned_cols=215 Identities=14% Similarity=0.207 Sum_probs=167.4
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
+.+.....++...-|..+.+.....-. ...+.++.-+|...+.++++.| |.+++|....++.+
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~~----v~~v~r~~sHp~~~~Yltgs~d-------------gsv~~~~w~~~~~v 2243 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKHP----VENVRRMTSHPSDPYYLTGSQD-------------GSVRMFEWGHGQQV 2243 (2439)
T ss_pred ccCCcccCCccccceecccceeEeecc----cCceeeecCCCCCceEEecCCC-------------ceEEEEeccCCCeE
Confidence 334444445555556555444332222 2458888889999999999988 69999999999998
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---CCeEEE
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---DGKIIE 361 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i 361 (458)
..+...+. ..++.+.|+.+|+.+..+..||.+.+|... .++....+.|........|-. ..+++++. ++.+.+
T Consensus 2244 ~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~l 2319 (2439)
T KOG1064|consen 2244 VCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCL 2319 (2439)
T ss_pred EEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccc
Confidence 88876555 889999999999999999999999999987 778888899999999999875 56776654 778999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
||..-.... ......|...++++++-|..+.|++|+.+|.|++||++..+....+.. ++ ...
T Consensus 2320 wDtl~~~~~--------s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~ 2381 (2439)
T KOG1064|consen 2320 WDTLLPPMN--------SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TRE 2381 (2439)
T ss_pred hhcccCccc--------ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhh
Confidence 997643221 111246888899999999999999999999999999987755443332 44 556
Q ss_pred eEEEecCCCcEEEEeCC
Q 012699 442 MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 442 ~l~s~~~dg~v~iw~l~ 458 (458)
++++|+..|.++||+++
T Consensus 2382 ~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2382 YFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred eeeccCcccceEEEEcc
Confidence 89999999999999975
No 279
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=5.4e-09 Score=95.63 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=157.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
++..++.++.++.+..+|..+++...... ....+.+.... .+..++.++.+|.+..||.++++.+..........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~---~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~ 178 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAK---LSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL 178 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeec---cCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce
Confidence 45678888889999999998887653222 12222211111 23467778889999999999999877665432110
Q ss_pred ce---eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--c---EEEEEEcc--CCCE
Q 012699 238 SV---LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP--A---ITSLCFNH--NGKI 307 (458)
Q Consensus 238 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~--~---i~~~~~~~--~~~~ 307 (458)
.. ...... + ..++.+..+ |.+..+|.++++............ . ...+.-+| .+..
T Consensus 179 ~~~~~~sp~~~-~-~~v~~~~~~-------------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~ 243 (377)
T TIGR03300 179 TLRGSASPVIA-D-GGVLVGFAG-------------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ 243 (377)
T ss_pred eecCCCCCEEE-C-CEEEEECCC-------------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE
Confidence 00 011111 1 233443333 689999999988766543211100 0 00011111 3457
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
+++++.+|.++.||..+++.+...... ...... ..+..++.++.||.+..+|..+++.. +... ... ..
T Consensus 244 vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~-W~~~--~~~-----~~ 311 (377)
T TIGR03300 244 VYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSEL-WKND--ELK-----YR 311 (377)
T ss_pred EEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEE-Eccc--ccc-----CC
Confidence 888888999999999999877665421 111222 24568888889999999999876443 3221 000 00
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE-EEEEECCCCCeEEEecCCCcEEEE
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI-TTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
....... .+..|++++.+|.++++|..+++...+...+...+ .+..+. ++ .|+.++.||.|..|
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 1111111 46788999999999999999887766665444332 233333 33 58888999999876
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=7.2e-09 Score=105.12 Aligned_cols=254 Identities=13% Similarity=0.092 Sum_probs=155.4
Q ss_pred EEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCcccccc------------CCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 151 SCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATIY------------CGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 151 ~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
..++++++ ++.+++-+.++.|++||..+.... ...... .-.....+++++.++.++++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~-~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIV-QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEE-EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788774 566777778889999997643211 100000 0123578889843334445555567899
Q ss_pred EEEcCCCceeeeccCCC---------------CCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 218 AWNVDAKRVVCDLNTTD---------------AFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
++|..++... ++.... .......++++|++ .++++...+ +.|++||..++
T Consensus 650 ~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~-------------~~I~v~d~~~g 715 (1057)
T PLN02919 650 EIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ-------------HQIWEYNISDG 715 (1057)
T ss_pred EEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC-------------CeEEEEECCCC
Confidence 9998876532 221100 01234678999954 444444444 48999998776
Q ss_pred ceeEEeecC-------C------CCCcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeee-------------eCC
Q 012699 282 KAMTVLPLG-------E------DPPAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGW-------------PAH 334 (458)
Q Consensus 282 ~~~~~~~~~-------~------~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~-------------~~~ 334 (458)
.... +... + .-.....++++|+++.|+ +-+.++.|++||+.++...... ..+
T Consensus 716 ~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 716 VTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred eEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 5432 1110 0 112356799999998554 4455789999999875432111 000
Q ss_pred --------CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-cc---CCCCCCCceeEEEEccCCCEEE
Q 012699 335 --------DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-FC---DPESSKSCRHEMALDVNGRRLL 402 (458)
Q Consensus 335 --------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~---~~~~~~~~v~~~~~s~~g~~l~ 402 (458)
-.....++++++|..+++-+.++.|++||..+............ +. .....-..+..++++++|++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 11245889999999888888999999999976533221111000 00 0111223578899999999888
Q ss_pred EEeCCccEEEEEccCCCc
Q 012699 403 VTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 403 ~~~~~~~i~i~~~~~~~~ 420 (458)
+-+.+++|++||+.+...
T Consensus 875 aDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCcc
Confidence 888899999999987643
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.30 E-value=2.4e-08 Score=85.32 Aligned_cols=224 Identities=17% Similarity=0.228 Sum_probs=147.1
Q ss_pred EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec-CCCCeEEEeecccCCCCcceeeccceeE
Q 012699 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
.+..|.+.++.++++-...+.|..|+..++.... +... ....+.+. +++.++++. .. .+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~~~G~~~~~~~g~l~v~~-~~--------------~~ 62 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----GPNGMAFDRPDGRLYVAD-SG--------------GI 62 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----SEEEEEEECTTSEEEEEE-TT--------------CE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----CCceEEEEccCCEEEEEE-cC--------------ce
Confidence 3567885588888888889999999999877543 2222 26677777 565555444 33 66
Q ss_pred EEEECCCCceeEEeec--CC-CCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699 274 TVWNMKTWKAMTVLPL--GE-DPPAITSLCFNHNGKILAASAVD--------GMIHMFDMSAGLQITGWPAHDSAISSIL 342 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~--~~-~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~~~~ 342 (458)
.++|+.+++....... .. .....+.++++|+|++.++.... |.|+.++.. ++..... ..-...+.|+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~ 140 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIA 140 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceE
Confidence 7779998876655544 22 34578999999999966665433 568888877 4433332 2345678999
Q ss_pred EcCCCCEEE-EecCCCeEEEEeccCCCe-eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 343 FGPDETSIF-SLGSDGKIIEWSLQNQGQ-VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 343 ~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
|+|+++.|+ +-+..+.|..+++..... ..... .+.........+-.++++.+|++.++....+.|.+++.++. .
T Consensus 141 ~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~-~ 216 (246)
T PF08450_consen 141 FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR---VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK-L 216 (246)
T ss_dssp EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE---EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC-E
T ss_pred ECCcchheeecccccceeEEEeccccccceeeee---eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc-E
Confidence 999998775 566788999999975443 21111 11111122245788999999999888888999999999843 3
Q ss_pred ccccCCCCCcEEEEEE-CCCCCeEE
Q 012699 421 GMRTLPHGAAITTVDW-HPTLPMFL 444 (458)
Q Consensus 421 ~~~~~~h~~~v~~~~~-~~~~~~l~ 444 (458)
...+.-....+++++| -|+.+.|+
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEE
Confidence 3333322458999999 46655444
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=2.1e-09 Score=86.22 Aligned_cols=227 Identities=9% Similarity=0.010 Sum_probs=146.8
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeec-cCCCCCCceeeee-ecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDL-NTTDAFPSVLDLK-CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK 279 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~ 279 (458)
....+|+.|+..|...+|...+.+....+ ..+. ..|.-+. +......+..++.|. ++++.++.
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~sn--n~v~~~~r~cd~~~~~~i~sndh-------------t~k~~~~~ 146 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDGHLYQCDVSN--NDVTLVKRYCDLKFPLNIASNDH-------------TGKTMVVS 146 (344)
T ss_pred ccccEEEeccccceeeeecccCcccceeeecccc--cchhhhhhhcccccceeeccCCc-------------ceeEEEEe
Confidence 34568999999999999999876543222 1111 1111000 001111233334442 77777665
Q ss_pred CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-cee-e-eeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG-LQI-T-GWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~-~-~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
.+.......... -.+.+++++++++++++.+....|..|.+... +.+ . .....++.-.+..|+.....+|+++.|
T Consensus 147 ~~s~~~~~h~~~--~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 147 GDSNKFAVHNQN--LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred cCcccceeeccc--cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 443333222111 23789999999999999999999999998653 222 2 223334556788999999999999999
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--EEEEEeCCccEEEEEccCCCcccccC-------CC
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR--RLLVTSGSVRAPIYQVRGHASGMRTL-------PH 427 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~i~i~~~~~~~~~~~~~-------~h 427 (458)
|++.|||++....+..... .....|.+.+..+.|+|.|. +|+..-.-+.+++.|+++......+. .|
T Consensus 225 g~~~I~DVR~~~tpm~~~s----strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMAEIS----STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred CcEEEEEecccccchhhhc----ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 9999999998766553322 22234888999999999774 45555556889999998876554433 23
Q ss_pred C-CcEEEEEECCCCCeEEEecCC
Q 012699 428 G-AAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 428 ~-~~v~~~~~~~~~~~l~s~~~d 449 (458)
. ..+..-.|+.++....+..++
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred cccccccccccCCCcccccccch
Confidence 3 347888888887766655544
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.25 E-value=4.6e-09 Score=84.28 Aligned_cols=232 Identities=11% Similarity=0.046 Sum_probs=148.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS 238 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 238 (458)
.-+||.|+.-|...+|...+.+....... .+...|.-+.=.......+..++.|.++++.+++.+.......... -.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~--~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN--LT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc--cc
Confidence 35789999999999999886654321111 1111111111001233446777888889988887655433332222 34
Q ss_pred eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317 (458)
Q Consensus 239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 317 (458)
+.+++++++++++++.+... .|..|.+.... ....+........-.+..|+.....+|++..||++
T Consensus 161 ~ns~~~snd~~~~~~Vgds~-------------~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSR-------------RVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC 227 (344)
T ss_pred eeeeEEcCCCceEEEecCCC-------------cceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence 78999999999999998875 78888776532 22222333334445778899999999999999999
Q ss_pred EEEeCCCCcee-----eeeeCCCCCeEEEEEcCCCC--EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699 318 HMFDMSAGLQI-----TGWPAHDSAISSILFGPDET--SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH 390 (458)
Q Consensus 318 ~v~d~~~~~~~-----~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (458)
.|||++..... .+-+.|.+.++.+.|+|.|. +|+..-.-+.+.+-|+++............. ........+.
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~-~~~~~tq~if 306 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDV-ERKHNTQHIF 306 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccc-cccccccccc
Confidence 99999874322 22346899999999998653 5666666788999999987655433222111 0111122366
Q ss_pred EEEEccCCCEEEEEeCC
Q 012699 391 EMALDVNGRRLLVTSGS 407 (458)
Q Consensus 391 ~~~~s~~g~~l~~~~~~ 407 (458)
.-.|+.++.-+.+.+++
T Consensus 307 gt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNEL 323 (344)
T ss_pred cccccCCCcccccccch
Confidence 66777777666655543
No 284
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=2.1e-09 Score=87.28 Aligned_cols=164 Identities=13% Similarity=0.194 Sum_probs=122.1
Q ss_pred eeEEEEECCCCceeEEeec-CC---CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEc
Q 012699 271 ASLTVWNMKTWKAMTVLPL-GE---DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFG 344 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~ 344 (458)
|.|.++..........+.. .. ......++.|++.+..++++..+|.+.+.+...... ++.+++|+-+++-..|+
T Consensus 95 G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~ 174 (339)
T KOG0280|consen 95 GQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS 174 (339)
T ss_pred ceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc
Confidence 6888886654333322211 00 011246788999999999999999999666554433 44889999999999997
Q ss_pred C-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCccc
Q 012699 345 P-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGM 422 (458)
Q Consensus 345 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~ 422 (458)
. +.+.+++|++|+.+..||++-.+...+. ....|...|.++.-+| .+.++++|+.|..|++||.+...++.
T Consensus 175 ~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 175 DKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred cCCCceEEecCCCceEEEEEecCCcceeee-------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 6 4568999999999999999965544433 2235677788888876 67899999999999999999777666
Q ss_pred ccCCCCCcEEEEEECCCCC
Q 012699 423 RTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 423 ~~~~h~~~v~~~~~~~~~~ 441 (458)
....-.+.|+.+.++|.-.
T Consensus 248 ~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 248 FKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ccCccccceEEEEecchhh
Confidence 6666678999999999643
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=4.7e-10 Score=91.78 Aligned_cols=287 Identities=15% Similarity=0.184 Sum_probs=174.4
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccc---------cc---------------ccceeeeeccCCceeeee
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEA---------CA---------------TTATHMGSAEMGQTWASS 78 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~---------~~---------------~~~~~~~~~~~~~~~~~~ 78 (458)
....|+++.| ...|.||++|...|.+.++..+... +. +.+..+.|..+
T Consensus 25 ead~ItaVef-d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~------- 96 (460)
T COG5170 25 EADKITAVEF-DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD------- 96 (460)
T ss_pred ccceeeEEEe-ccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecC-------
Confidence 4566999999 9999999999999999887655332 00 12223444444
Q ss_pred CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCc--------ceec-cCCCeeeeeeeeee-ccCCC
Q 012699 79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRD--------AQGE-EDFPEVKVDFLETF-LGHTS 148 (458)
Q Consensus 79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~-~~~~~~~~~~~~~~-~~h~~ 148 (458)
.+...||++ ..|+++++|++.....+....-. ..+..-+|-|.- +.-. ..+..+...+.+.+ ..|.-
T Consensus 97 -t~r~hFLls-tNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 97 -TGRNHFLLS-TNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred -CCcceEEEe-cCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 224455554 46899999998764321111000 001111222211 1111 12223333444444 67999
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cC-----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YC-----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
-|++++|+.|.+.++++ .|=.|.+|+++-.......... ++ ..-|++..|+|.....+.-.+..|.|++-|++
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 99999999999888876 4678999988644332211111 11 13478888998878888888888999999987
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
.......- .........+... .+ +.+-...|..+.|+
T Consensus 253 q~alcdn~------~klfe~~~D~v~~------------------------------------~f-f~eivsSISD~kFs 289 (460)
T COG5170 253 QSALCDNS------KKLFELTIDGVDV------------------------------------DF-FEEIVSSISDFKFS 289 (460)
T ss_pred hhhhccCc------hhhhhhccCcccc------------------------------------hh-HHHHhhhhcceEEc
Confidence 43321100 0000011111000 00 12233468889999
Q ss_pred cCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCC------------CCe---EEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 303 HNGKILAASAVDGMIHMFDMSA-GLQITGWPAHD------------SAI---SSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~------------~~v---~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
++|+++++-+. -++++||.+. ..++.+++-|. ..| ..+.|+.|.+.+++|+..+..-+|-..
T Consensus 290 ~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 290 DNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred CCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 99999988654 4799999976 46677775553 223 357888899999999998888888744
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.7e-08 Score=92.40 Aligned_cols=259 Identities=15% Similarity=0.181 Sum_probs=158.0
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
+..++.++.+|.+..+|..+++........ ..+. ... .++..++.++.+|.+..+|.++|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~---~~~~~~p~---v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLD---ERLSGGVG---ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCC---CCcccceE---EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc---
Confidence 557888888999999998888765322211 1111 122 235667888899999999999999887665432
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE---EEEEEccCCCEEEEEecC
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI---TSLCFNHNGKILAASAVD 314 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~l~~~~~d 314 (458)
.+.+.... .+..++.+..+ |.+..+|.++++.+..+......... .+.... +..++.+..+
T Consensus 136 ~~~~~p~v-~~~~v~v~~~~-------------g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~ 199 (377)
T TIGR03300 136 EVLSPPLV-ANGLVVVRTND-------------GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAG 199 (377)
T ss_pred eeecCCEE-ECCEEEEECCC-------------CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCC
Confidence 12111111 12334444333 69999999999988776543221000 111121 3467888889
Q ss_pred CeEEEEeCCCCceeeeeeCCCC----C---eEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 315 GMIHMFDMSAGLQITGWPAHDS----A---ISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
|.+..+|.++++.+........ . ...+.-+| .+..++.++.+|.+..||..+++. .|......
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~------- 271 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV-LWKRDASS------- 271 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-EEeeccCC-------
Confidence 9999999999987654331100 0 00111112 345788888899999999987643 34322100
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.. ....++..+++++.+|.++.+|..+++.+...... .....+... .+..|++++.||.|+++|.
T Consensus 272 ---~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 272 ---YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSR 337 (377)
T ss_pred ---cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEEC
Confidence 11 11235678888889999999999888665444221 112222222 3567888999999999885
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=3.6e-08 Score=90.13 Aligned_cols=203 Identities=11% Similarity=0.000 Sum_probs=125.3
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
..|.+-|.+.... ..+... .......|+|+++. ++..+.... ...|.++|+.+++...... .
T Consensus 169 ~~l~~~d~dg~~~-~~~~~~---~~~~~p~wSpDG~~~i~y~s~~~~----------~~~Iyv~dl~tg~~~~lt~---~ 231 (419)
T PRK04043 169 SNIVLADYTLTYQ-KVIVKG---GLNIFPKWANKEQTAFYYTSYGER----------KPTLYKYNLYTGKKEKIAS---S 231 (419)
T ss_pred ceEEEECCCCCce-eEEccC---CCeEeEEECCCCCcEEEEEEccCC----------CCEEEEEECCCCcEEEEec---C
Confidence 3555555544332 222222 25678999999985 555444311 1389999999887766543 2
Q ss_pred CCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CC--eEEEEeccC
Q 012699 293 PPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DG--KIIEWSLQN 366 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~ 366 (458)
.+......|+|||+.++.... +..|+++|+.+++. ..+..+........|+|||+.|+..+. .+ .|.+.|+.+
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 344567889999987765432 35788889887764 344444433445689999998776654 33 477777765
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---------ccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---------VRAPIYQVRGHASGMRTLPHGAAITTVDWH 437 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 437 (458)
+..... .. ... ....|||||++|+..... ..|++.++.++.. ..+... .......|+
T Consensus 311 g~~~rl-------t~-~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~S 376 (419)
T PRK04043 311 GSVEQV-------VF-HGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFS 376 (419)
T ss_pred CCeEeC-------cc-CCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEEC
Confidence 433111 10 011 124899999999877653 3688888877643 223322 233468999
Q ss_pred CCCCeEEEecC
Q 012699 438 PTLPMFLTGSA 448 (458)
Q Consensus 438 ~~~~~l~s~~~ 448 (458)
|||+.|+....
T Consensus 377 PDG~~I~f~~~ 387 (419)
T PRK04043 377 SDGGSIMFIKY 387 (419)
T ss_pred CCCCEEEEEEc
Confidence 99997765543
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=9.8e-09 Score=94.39 Aligned_cols=370 Identities=12% Similarity=0.080 Sum_probs=218.3
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccccc-------ccceeeeeccCCceeeeeCCc-cceeEeeccCCCc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-------TTATHMGSAEMGQTWASSRPA-LSRFATNMSGNDS 94 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 94 (458)
|...-+++.+ ++.|- +|-|+ ...+.+-|..+-+.+ ..+..+.|.|.....++...+ -.-.+|++...|.
T Consensus 14 ~~sN~~A~Dw-~~~GL-iAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 14 SRSNRNAADW-SPSGL-IAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred Cccccccccc-Cccce-EEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 3334566666 66554 44444 244555555544443 344467788875555454433 5667888888999
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC---CC-CEEEEEeCCCc
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS---SG-NNIASASVDGT 170 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~~l~s~~~dg~ 170 (458)
|.+||..... .+..+..|.++|..++|-+ +. ..|+.-....+
T Consensus 91 Iil~d~~~~s----------------------------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 91 IILVDFVLAS----------------------------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred EEEEEehhhh----------------------------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence 9999976643 3345667888999999876 33 35666666789
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC-------CceeeeccCCCC--------
Q 012699 171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA-------KRVVCDLNTTDA-------- 235 (458)
Q Consensus 171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-------~~~~~~~~~~~~-------- 235 (458)
+.+|+..+++.... .........|+.+.|-+.+.+..-+..|.+.+-+.-. ++..+.-..+..
T Consensus 137 lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred EEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 99999999987542 2223445566889887877777777777777766432 111111111000
Q ss_pred ------C---C------ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 236 ------F---P------SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 236 ------~---~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
. . ....++|+|.-+.++.....+ .+.++|++-..++....++....++..+-
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr-------------ellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR-------------ELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc-------------ceEEEcchhhceeEEEEeccCCcceeEec
Confidence 0 0 012355666655444333332 89999999888888887665444444443
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCc----------------eeeeeeCC-CCCeEEEEEcCC-CCEEEEecCCCeEEEE
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGL----------------QITGWPAH-DSAISSILFGPD-ETSIFSLGSDGKIIEW 362 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~----------------~~~~~~~~-~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 362 (458)
-.|+...|++...||.+.+|-.+... ....+..- +-.+......|. ...++.--.+|...+|
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 34445689999999999999754311 11111100 111122223343 3344444567788899
Q ss_pred eccCCCeeEEeec----------------------CCcccCCCCCCCceeEEEEc-----------cCC-------CEEE
Q 012699 363 SLQNQGQVLWTRN----------------------CSRFCDPESSKSCRHEMALD-----------VNG-------RRLL 402 (458)
Q Consensus 363 d~~~~~~~~~~~~----------------------~~~~~~~~~~~~~v~~~~~s-----------~~g-------~~l~ 402 (458)
.+.+++....... ...+.....|.....+.... |.| .++|
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 8885432211100 00011111222333332222 222 3678
Q ss_pred EEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 403 VTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 403 ~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
+|+..|+|.++|+.++.....+..|...|.++.|-.... |++
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvS 483 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVS 483 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEE
Confidence 999999999999999877777778999999999976654 444
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.21 E-value=7.5e-08 Score=81.21 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=157.1
Q ss_pred eEEEEEecCCCeEEEEEcCCCc-EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 194 IMSLEWECKSDRLLLIGTADGG-IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
...++.+|.....++.+-.-|+ ..+||..+++....+......---=.-.|+++|++|++...+. ..+.|.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~--------~~g~G~ 78 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY--------ETGRGV 78 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc--------CCCcEE
Confidence 3456777667777888877664 6789999999887776654322223578999999999987764 334489
Q ss_pred EEEEECC-CCceeEEeecCCCCCcEEEEEEccCCCEEEEEe------------------cCCeEEEEeCCCCceeeeee-
Q 012699 273 LTVWNMK-TWKAMTVLPLGEDPPAITSLCFNHNGKILAASA------------------VDGMIHMFDMSAGLQITGWP- 332 (458)
Q Consensus 273 i~i~d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~~- 332 (458)
|-|||.. +.+.+.++.. +--....+.+.|||+.|+++. .+-.+...|..+|+.+.+..
T Consensus 79 IgVyd~~~~~~ri~E~~s--~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 79 IGVYDAARGYRRIGEFPS--HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred EEEEECcCCcEEEeEecC--CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 9999999 5556666643 333456788999998888763 23356677778888777633
Q ss_pred ---CCCCCeEEEEEcCCCCEEEEecCCCe-------EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699 333 ---AHDSAISSILFGPDETSIFSLGSDGK-------IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL 402 (458)
Q Consensus 333 ---~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 402 (458)
.|..+|+.+++.++|..++..-..|. +.+++.... .... .. ..........++-++++++++.+++
T Consensus 157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~-~~-p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLL-PA-PEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceec-cC-ChHHHHhhCCceEEEEEeCCCCEEE
Confidence 37779999999999976665443332 333333221 1100 00 0001124567899999999999888
Q ss_pred EEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 403 VTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 403 ~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
+.+- .+.+.+||..++..+.... -..+..++-.+++ +++|.+.
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCCC
Confidence 7775 5789999998875443222 1345556666665 5665553
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.1e-09 Score=89.73 Aligned_cols=288 Identities=19% Similarity=0.242 Sum_probs=170.5
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-CCccc--------------cccCCCceEEEEEecC-CCeEEEE
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP-ASRNA--------------TIYCGTEIMSLEWECK-SDRLLLI 209 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~--------------~~~~~~~v~~~~~~~~-~~~~l~~ 209 (458)
....|+++.|...|.||++|...|.|.+|.-..... ..... ...-...|..+.|..+ +...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346699999999999999999999999997543321 00000 0111245788888633 3346777
Q ss_pred EcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----cee
Q 012699 210 GTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAM 284 (458)
Q Consensus 210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~ 284 (458)
.+.|.+|++|.+.........+. ....-.-+|.+.-+.+.. .+++=.+..- ...
T Consensus 105 stNdktiKlWKiyeknlk~va~n-----nls~~~~~~~~g~~~s~~----------------~l~lprls~hd~iiaa~p 163 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAEN-----NLSDSFHSPMGGPLTSTK----------------ELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred ecCCceeeeeeeecccchhhhcc-----ccccccccccCCCcCCHH----------------HhhcccccccceEEEecc
Confidence 78899999999875532111110 000001111111111100 0000000000 001
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce---eeeeeCCC-----CCeEEEEEcCC-CCEEEEecC
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ---ITGWPAHD-----SAISSILFGPD-ETSIFSLGS 355 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~ 355 (458)
+.+....|+.-++++.|+.|...++++ .|-.|.+|++..... +..+++|. .-|++..|+|. ...+.-.+.
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 112235677789999999998888775 577899999865322 33334443 46888999994 456777788
Q ss_pred CCeEEEEeccCCCeeEEeecCCc-cc------CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CC
Q 012699 356 DGKIIEWSLQNQGQVLWTRNCSR-FC------DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PH 427 (458)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~-~~------~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h 427 (458)
.|.|++-|++............. .. ........|..+.|+++|+++++-. -.+++|||++..+.+.... -|
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence 99999999985432211100000 00 1112335678899999999997543 3579999998776655444 12
Q ss_pred ------------CCcE---EEEEECCCCCeEEEecCCCcEEEEe
Q 012699 428 ------------GAAI---TTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 428 ------------~~~v---~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.+.| ..+.|+-|.+.+.+|+.....-||-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 2333 3478898888888998877666653
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.19 E-value=1.9e-08 Score=82.10 Aligned_cols=198 Identities=13% Similarity=0.172 Sum_probs=126.7
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--cee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--KAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 317 (458)
++.+.+|+.++..-.. .|.+-..++. ..+ ..+. ......-+.++||||+.+||.+...|+|
T Consensus 3 ~~~~~~Gk~lAi~qd~--------------~iEiRsa~Ddf~si~~kcqVp-kD~~PQWRkl~WSpD~tlLa~a~S~G~i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ--------------CIEIRSAKDDFSSIIGKCQVP-KDPNPQWRKLAWSPDCTLLAYAESTGTI 67 (282)
T ss_pred eeecCCCcEEEEEecc--------------EEEEEeccCCchheeEEEecC-CCCCchheEEEECCCCcEEEEEcCCCeE
Confidence 5566788887776654 6666544431 111 1222 2223346889999999999999999999
Q ss_pred EEEeCCCCceeeeeeCC-------CCCeEEEEEcCC------CCEEEEecCCCeEEEEeccCC--CeeEEeecCCcccCC
Q 012699 318 HMFDMSAGLQITGWPAH-------DSAISSILFGPD------ETSIFSLGSDGKIIEWSLQNQ--GQVLWTRNCSRFCDP 382 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~ 382 (458)
++||+.. ..+..++.. ...|..+.|.+- ...|++...+|.++-|-+..+ +.-. ..+.+.-.
T Consensus 68 ~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~---e~hsfsf~ 143 (282)
T PF15492_consen 68 RVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ---ENHSFSFS 143 (282)
T ss_pred EEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce---eeEEEEec
Confidence 9999874 444444322 246677777542 224667778888888776432 1111 11122222
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCc-----------cEEEEEccCCCccc--------------------ccC------
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSV-----------RAPIYQVRGHASGM--------------------RTL------ 425 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~-----------~i~i~~~~~~~~~~--------------------~~~------ 425 (458)
......|.++.++|.-++|++|+... -+.-|.+-...+.. ++.
T Consensus 144 ~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred ccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 34567899999999999998887421 25556543211110 000
Q ss_pred ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.....|..|..||||.+||+...+|.|.+|++.
T Consensus 224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 135679999999999999999999999999974
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=1.4e-09 Score=86.73 Aligned_cols=151 Identities=17% Similarity=0.295 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceee-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVC-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
++.++++..||.+.+.+.+....+. .+... + ..-.+.++...+..+.++.... -..-+..+.|+++..+
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~-~-~~~as~~~~~~~~~i~s~~~g~--------~n~~d~~~a~~~~p~~ 170 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSI-H-SGSASRKICRHGNSILSGGCGN--------WNAQDNFYANTLDPIK 170 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccc-c-ccccccceeecccEEecCCcce--------Eeeccceeeecccccc
Confidence 4568999999999999887622111 11110 0 1122233334444444433210 0001356666665433
Q ss_pred eeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeE
Q 012699 283 AMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGP-DETSIFSLGSDGKI 359 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 359 (458)
....-.. ....|.+++-+|. ...+++|+.||.+-+||.++.. +...+..|+.+++.+-|+| ++..|++++.||.+
T Consensus 171 t~~~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 171 TLIPSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred ccccccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 3222211 1234889999995 5577889999999999999863 4456679999999999999 67899999999999
Q ss_pred EEEeccC
Q 012699 360 IEWSLQN 366 (458)
Q Consensus 360 ~iwd~~~ 366 (458)
..||..+
T Consensus 249 w~wdas~ 255 (319)
T KOG4714|consen 249 WHWDAST 255 (319)
T ss_pred EEEcCCC
Confidence 9999875
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=8.4e-08 Score=87.75 Aligned_cols=196 Identities=9% Similarity=0.016 Sum_probs=122.4
Q ss_pred ceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699 193 EIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
......|+|.....++..+. +..|.++|+.+++........ .......|+||++.++...... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~---g~~~~~~~SPDG~~la~~~~~~----------g 255 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ---GMLVVSDVSKDGSKLLLTMAPK----------G 255 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC---CcEEeeEECCCCCEEEEEEccC----------C
Confidence 66788999443333554333 356999999888765543322 3455678999998776554321 1
Q ss_pred ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCC
Q 012699 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDMSAGLQITGWPAHDSAISSILFGPD 346 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~ 346 (458)
+..|.++|+.+++..+... .........|+|||+.|+..+.. + .|++.|+.+++..+.... ... ...|+|+
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPD 329 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTY 329 (419)
T ss_pred CcEEEEEECCCCcEEEccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCC
Confidence 2488999998876544322 22223456899999988776542 2 688889887765333221 111 2489999
Q ss_pred CCEEEEecCC---------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEE
Q 012699 347 ETSIFSLGSD---------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQ 414 (458)
Q Consensus 347 ~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~ 414 (458)
|++|+..+.. ..|.+.|+.++.... +... .......|+|||+.|+..+.. ..+.+.+
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-------LT~~----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-------LTAN----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-------CCCC----CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 9988866553 257888887653221 1110 112347899999998877653 2466777
Q ss_pred ccCC
Q 012699 415 VRGH 418 (458)
Q Consensus 415 ~~~~ 418 (458)
+++.
T Consensus 399 l~g~ 402 (419)
T PRK04043 399 LNYN 402 (419)
T ss_pred cCCC
Confidence 7664
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.13 E-value=1.5e-09 Score=92.04 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=105.6
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEEEcCCCCEEEEe---cCCCeEEEEeccCCC
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSILFGPDETSIFSL---GSDGKIIEWSLQNQG 368 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~ 368 (458)
...+..+|.++++|++..+....++++..... +..... ...-+++.|..+......+ ++...+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 44566778899999998888887887765432 222211 2223344444444444333 33444555555432
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeEEEec
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~ 447 (458)
......+|-..+..++++||+++++++..|..|++-.+.....+..+. ||...|..++.-++ ..|+++|
T Consensus 143 ---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 143 ---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred ---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC
Confidence 222334677889999999999999999999999999988776665554 89999999999765 4589999
Q ss_pred CCCcEEEEeC
Q 012699 448 ADHSVQVMSL 457 (458)
Q Consensus 448 ~dg~v~iw~l 457 (458)
.|++|++||+
T Consensus 213 GD~tlr~Wd~ 222 (390)
T KOG3914|consen 213 GDKTLRLWDI 222 (390)
T ss_pred CCCcEEEEec
Confidence 9999999997
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=1.9e-09 Score=91.40 Aligned_cols=152 Identities=11% Similarity=0.159 Sum_probs=103.9
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCce----eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRV----VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
+++++++.+..+....+++...... ........ ....+.+..+......+...+ ....+.+|.
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~---~~~ai~~~~~~~sv~v~dkag----------D~~~~di~s 138 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK---RPTAISFIREDTSVLVADKAG----------DVYSFDILS 138 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc---CcceeeeeeccceEEEEeecC----------Cceeeeeec
Confidence 6778888888877777777654332 22222221 223333333333332222211 013666666
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCC
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
...+.+...+ +|-..+..++++||+++|+++..|..|++-.......+..+- +|+.-|..++.-++. .|+++|.|
T Consensus 139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD 214 (390)
T KOG3914|consen 139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGD 214 (390)
T ss_pred ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCC
Confidence 6555555443 788889999999999999999999999998887666665554 799999999997654 68999999
Q ss_pred CeEEEEeccCCCee
Q 012699 357 GKIIEWSLQNQGQV 370 (458)
Q Consensus 357 g~i~iwd~~~~~~~ 370 (458)
+++++||+.+++.+
T Consensus 215 ~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 215 KTLRLWDITSGKLL 228 (390)
T ss_pred CcEEEEecccCCcc
Confidence 99999999998765
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-08 Score=87.98 Aligned_cols=288 Identities=15% Similarity=0.095 Sum_probs=190.7
Q ss_pred eCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC
Q 012699 78 SRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS 157 (458)
Q Consensus 78 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 157 (458)
++....+++.+++.||.++.|.-..-. -.+.+..++.|.+.|.+++.+-
T Consensus 15 v~~tka~fiiqASlDGh~KFWkKs~is-------------------------------GvEfVKhFraHL~~I~sl~~S~ 63 (558)
T KOG0882|consen 15 VFPTKAKFIIQASLDGHKKFWKKSRIS-------------------------------GVEFVKHFRAHLGVILSLAVSY 63 (558)
T ss_pred EeeehhheEEeeecchhhhhcCCCCcc-------------------------------ceeehhhhHHHHHHHHhhhccc
Confidence 334456899999999999999853311 1125667889999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC----eEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 158 SGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD----RLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 158 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
++.++.|.+. |..++++|+.+-...........+.. +.|....+ .+-++.-.+|.+.++|-..+.+..-+..
T Consensus 64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred cceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 9999999777 99999999987765533333333322 33332223 2333344578999999876654444444
Q ss_pred CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC------CceeEEe-------ecCCCCCcEEEE
Q 012699 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT------WKAMTVL-------PLGEDPPAITSL 299 (458)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~------~~~~~~~-------~~~~~~~~i~~~ 299 (458)
.-+..+|..+.+.+.+..+++.... |.|.-|.... .+....+ .+........++
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~-------------gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDIS-------------GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred ccccCceEEEEeeccccceeecccc-------------ceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 4456899999999999999888766 6999998773 1111111 112234567899
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeee--------------------------------CCCC-CeEEEEEcCC
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--------------------------------AHDS-AISSILFGPD 346 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------------------------------~~~~-~v~~~~~~~~ 346 (458)
.|+|++..+.+-+.|..|++++..+++.++.+. .|.. .-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 999999999999999999999999887654332 1111 3345678888
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCc--cc------CC--------CCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR--FC------DP--------ESSKSCRHEMALDVNGRRLLVTSGSVRA 410 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~------~~--------~~~~~~v~~~~~s~~g~~l~~~~~~~~i 410 (458)
+++|+-++-=| |++.++.++........... +. .. ......-..+.+.+|-..++++-..+++
T Consensus 288 ~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rf 366 (558)
T KOG0882|consen 288 GNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRF 366 (558)
T ss_pred CCEEEeeccee-EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceE
Confidence 88888877654 88888887654332211110 00 00 0000111123466777888888888889
Q ss_pred EEE
Q 012699 411 PIY 413 (458)
Q Consensus 411 ~i~ 413 (458)
+++
T Consensus 367 ylf 369 (558)
T KOG0882|consen 367 YLF 369 (558)
T ss_pred EEE
Confidence 988
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.8e-09 Score=90.93 Aligned_cols=258 Identities=15% Similarity=0.125 Sum_probs=169.6
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVD 222 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~ 222 (458)
-|.+.|+.+.-. ..+++.+++.||.++.|.-..-..+. ......|-..+.+++.+ .++.++.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S-~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVS-YDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcc-ccceeEeeccCcccceeEEEee
Confidence 377778776654 45699999999999999754312211 11223344567777777 77888888777 9999999998
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCC--eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEP--IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
+-..+.-++...-++.+. ...++... .++....+. |.+.++|-....+...+.-.-|..+|.++.
T Consensus 85 n~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~s------------g~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKS------------GKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ccchhhhcccccCCCceE-EecCCCCeeeeEEeecccC------------CCcEEECCcCCcCccceecccccCceEEEE
Confidence 766554444433222222 22222211 333333333 699999988766555554567888999999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCC------Cce---------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSA------GLQ---------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~------~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
+++-+..+++....|.|.-|.... .+. +..+........++.|+|++..+.+-+.|..|++++.+
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 999999999999999999999762 111 11122334567899999999999999999999999998
Q ss_pred CCCeeEEeecCCc--------c---------------cCCCCC-CCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 366 NQGQVLWTRNCSR--------F---------------CDPESS-KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 366 ~~~~~~~~~~~~~--------~---------------~~~~~~-~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
+++.......... . ...+.+ ......+.|...|++|+.++--| |++.++.++
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 7654321110000 0 000111 12345578999999999887666 677777655
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=2.5e-07 Score=78.87 Aligned_cols=221 Identities=15% Similarity=0.169 Sum_probs=136.7
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV 247 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (458)
+|+|..||..+++.+................. .++..+++++.++.|..||..+|+.+........ +.... ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~~~~~-~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV--PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---ISGAP-VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE--EETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---GGSGE-EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE--EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---cccee-eec
Confidence 67888888877776543322111122221122 2455677778999999999999998877776432 11111 223
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCCC-CcEEEEEEccCCCEEEEEecCCeEEEEeCCCC
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGEDP-PAITSLCFNHNGKILAASAVDGMIHMFDMSAG 325 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 325 (458)
+..++....+ +.+..+|..+++..... ...... ...........+..++++..++.|..+|+++|
T Consensus 76 ~~~v~v~~~~-------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG 142 (238)
T PF13360_consen 76 GGRVYVGTSD-------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG 142 (238)
T ss_dssp TTEEEEEETT-------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT
T ss_pred ccccccccce-------------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC
Confidence 3344444443 49999999999998884 322111 11222333334778888888999999999999
Q ss_pred ceeeeeeCCCCC----------e-EEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 326 LQITGWPAHDSA----------I-SSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 326 ~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
+.+......... + ..+.+ .++ .++.++.++.+.-+|+.+++.. +... .. .+.. ..
T Consensus 143 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~-w~~~-~~---------~~~~-~~ 208 (238)
T PF13360_consen 143 KLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKL-WSKP-IS---------GIYS-LP 208 (238)
T ss_dssp EEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEE-EEEC-SS----------ECE-CE
T ss_pred cEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEE-EEec-CC---------CccC-Cc
Confidence 998887764422 1 22222 244 7777777775433499987644 4322 11 1111 24
Q ss_pred ccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699 395 DVNGRRLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 395 s~~g~~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
.+++..|++++.++.+..||+.+++..
T Consensus 209 ~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 209 SVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 567888888889999999999988643
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.04 E-value=5.4e-07 Score=73.79 Aligned_cols=237 Identities=12% Similarity=0.126 Sum_probs=127.8
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEecCCCCCCC--cc-ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 153 CRFSSSGNNIASASVDGTVRIWTYDSSTPAS--RN-ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 153 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
++.+++|+.||.- .|..|.|=..+..-... +. .......+=..++|+ +++.+|+.+...|+|+++|+..... ..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~l-f~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSEL-FV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEEC-CCCcEEEEEcCCCeEEEEeccccee-EE
Confidence 5667788877765 46666665544322110 00 111222345789999 8899999999999999999986433 33
Q ss_pred ccCCC-----CCCceeeeeecCCC------CeEEEeecccCCCCcceeeccceeEEEEECC-----CCceeEEeecCCC-
Q 012699 230 LNTTD-----AFPSVLDLKCSPVE------PIFVSAAASRRYGSSNIYSWGFASLTVWNMK-----TWKAMTVLPLGED- 292 (458)
Q Consensus 230 ~~~~~-----~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-----~~~~~~~~~~~~~- 292 (458)
+.... -...|..+.|.+.. ..++..... |.++-|-+. ..+....+.+..|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------------G~L~Sy~vs~gt~q~y~e~hsfsf~~~y 146 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------------GQLRSYLVSVGTNQGYQENHSFSFSSHY 146 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEecc-------------ceeeeEEEEcccCCcceeeEEEEecccC
Confidence 33211 11234445444332 122222222 455555432 2334445554433
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE--EEEecCCCe------EEEEec
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS--IFSLGSDGK------IIEWSL 364 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~------i~iwd~ 364 (458)
+..|.++.++|..++|++|+.... +++. -++....+++-..-.+..+ .++...|+. -.+|.+
T Consensus 147 p~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 147 PHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred CCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 678999999999888888765322 0000 0011112222221111111 112222211 123332
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~ 424 (458)
-+.+ .+.........|..|..||||+.||+...+|.|.+|++.+.......
T Consensus 217 ~~~~---------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 217 PSFK---------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred ccee---------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 2210 01111234567999999999999999999999999999876554443
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=3.2e-06 Score=72.30 Aligned_cols=228 Identities=16% Similarity=0.175 Sum_probs=143.2
Q ss_pred EEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 152 CCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 152 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
++.|.+ ++.++++--..+.|..|+..++.... ..... ...+++..+++. ++.+... .+.++|..+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~~-~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLPG-PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESSS-EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecCC-CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEe
Confidence 578888 67777777778999999987765421 22222 677777744555 4444444 4566699988655444
Q ss_pred cC--CC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699 231 NT--TD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI 307 (458)
Q Consensus 231 ~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (458)
.. .. ......++++.|+|.+.++.......... ..|.+..++.. ++...... .-...+.++|+|+++.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~-----~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGI-----DPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCG-----GSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSE
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccc-----cccceEEECCC-CeEEEEec---CcccccceEECCcchh
Confidence 33 22 34678899999999977776544321111 00578888887 45444332 1234789999999997
Q ss_pred EE-EEecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699 308 LA-ASAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 308 l~-~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
|+ +-+..+.|..|++..... ...+....+..-.+++..+|++.++....+.|.+++.. ++ ........
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~-~~~~i~~p-- 223 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK-LLREIELP-- 223 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC-EEEEEE-S--
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc-EEEEEcCC--
Confidence 76 455678899999864221 12222222347889999999888877778999999987 33 32222111
Q ss_pred cCCCCCCCceeEEEE-ccCCCEEEEEe
Q 012699 380 CDPESSKSCRHEMAL-DVNGRRLLVTS 405 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~-s~~g~~l~~~~ 405 (458)
...+++++| .|+.+.|++.+
T Consensus 224 ------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 ------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ------SSSEEEEEEESTTSSEEEEEE
T ss_pred ------CCCEEEEEEECCCCCEEEEEe
Confidence 125789999 47777776654
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=6.3e-09 Score=95.08 Aligned_cols=282 Identities=13% Similarity=0.199 Sum_probs=173.4
Q ss_pred cceeeeeeccCCCceeeeeecCcceEEeccc--ccccc--c-----cceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 25 ETIKYANIGQTKNSTLASGVNEESLLLSTNS--SEACA--T-----TATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 25 ~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~--~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
..++++.+ +|.|.-+|.++.-|-..+ |.. ..+.. . .+.+..|++.. ....++++. .....
T Consensus 25 ~~~~a~si-~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~--------a~~~wiVst-s~qka 93 (1081)
T KOG0309|consen 25 GGFNAVSI-NPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHP--------AKPYWIVST-SNQKA 93 (1081)
T ss_pred Ccccceee-ccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCC--------CCceeEEec-Ccchh
Confidence 45788888 999998888887775443 222 11111 1 22356666661 223334333 34445
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iw 174 (458)
.+|.+....... ....+.||...|+.+-|+|.. ..+++++.|-.+..|
T Consensus 94 iiwnlA~ss~~a-------------------------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 94 IIWNLAKSSSNA-------------------------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhhhhhcCCccc-------------------------------eEEEEecCccceeccccCCCCCcceeeccccccceee
Confidence 567765533111 233577999999999999964 468999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecCCCC-eEE
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSPVEP-IFV 252 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 252 (458)
|+++..... .....-......++|+-.++..+++ +....|++||.+.|. ++..++.+ ...+..+.|..--. .+.
T Consensus 143 d~rSp~~p~-ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr~~~s~~~ 218 (1081)
T KOG0309|consen 143 DMRSPHRPF-YSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGH--VSSVNSIDFNRFKYSEIM 218 (1081)
T ss_pred eccCCCcce-eeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEeccc--ceeeehHHHhhhhhhhhc
Confidence 998765432 1222233456778898666665554 555689999998764 55666653 35677777665332 344
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC--EEEEEecCCeEEEEeCC-------
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK--ILAASAVDGMIHMFDMS------- 323 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~------- 323 (458)
+.+.| |+|+.||............. ...+|..-.+-|-|. ++.---.+..+.+++.+
T Consensus 219 s~~~d-------------~tvkfw~y~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 219 SSSND-------------GTVKFWDYSKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred ccCCC-------------Cceeeecccccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhc
Confidence 44444 69999998764433332221 224455556666332 22211112234444332
Q ss_pred --C-CceeeeeeCCCCCeEEEEEcCCC----------CEEEEecCCCeEEEEeccC
Q 012699 324 --A-GLQITGWPAHDSAISSILFGPDE----------TSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 324 --~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~ 366 (458)
+ .+++.++.+|.+.|....|-..+ -.|+|=+.|..+++|-+.+
T Consensus 285 ~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2 46789999999988776664321 2699999999999999874
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=1.9e-09 Score=62.21 Aligned_cols=38 Identities=45% Similarity=0.800 Sum_probs=36.1
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
++++++++|.++|++++|+|++++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 303
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=1.1e-06 Score=80.88 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=155.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
+..++.++.+|.+..+|.++++....... ...+.+ ... .+..++.+..+|.+..+|.++|+.+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~---~~~~~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKV---AGEALSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccC---CCceecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 45677788899999999998887643322 122221 111 23457778889999999999999887765432100
Q ss_pred ce---eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----cEEEEEEcc--CCCE
Q 012699 238 SV---LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-----AITSLCFNH--NGKI 307 (458)
Q Consensus 238 ~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----~i~~~~~~~--~~~~ 307 (458)
.. ...... +..++.+..+ |.+..+|..+++............ ....+..+| .+..
T Consensus 194 ~~~~~~sP~v~--~~~v~~~~~~-------------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 194 TLRGESAPATA--FGGAIVGGDN-------------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred cccCCCCCEEE--CCEEEEEcCC-------------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE
Confidence 00 011111 1223333333 588889999888776554321100 011111222 2456
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
+++++.+|.+..+|..+++.+.+... .....+. ..+..++.++.+|.+..+|..+++. .|.... .. ..
T Consensus 259 vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~--~~-----~~ 326 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVE-LWSQSD--LL-----HR 326 (394)
T ss_pred EEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcE-EEcccc--cC-----CC
Confidence 77778899999999999987765432 1111222 2456788888999999999987644 432211 00 00
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-EEEECCCCCeEEEecCCCcEEEEeC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-TVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....... .+.+|++++.+|.++..|..+++.+.+..-....+. +..+ .+..|+.++.||.|..+++
T Consensus 327 ~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 0111111 356788899999999999988876555432222222 2223 2446888899999998875
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.98 E-value=3.7e-06 Score=71.22 Aligned_cols=245 Identities=16% Similarity=0.108 Sum_probs=155.2
Q ss_pred eEEEEeCC-CCCEEEEEeCCCc-EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-----CCcEEEEEcC
Q 012699 150 ISCCRFSS-SGNNIASASVDGT-VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGIKAWNVD 222 (458)
Q Consensus 150 v~~~~~~~-~~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~~wd~~ 222 (458)
...++.+| ....++.+-.-|+ ..+||..+++...........+-.-.-.|+ +++++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECc
Confidence 34577788 4556677766665 578999888766433222222222345677 78888888643 5799999999
Q ss_pred -CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC----C-CcceeeccceeEEEEECCCCceeEEeec--CCCCC
Q 012699 223 -AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY----G-SSNIYSWGFASLTVWNMKTWKAMTVLPL--GEDPP 294 (458)
Q Consensus 223 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~g~i~i~d~~~~~~~~~~~~--~~~~~ 294 (458)
+-+.+.++..+. -....+.+.|+++.|+.+...-.. + ..+-..+....+...|..+++.+....+ ..|..
T Consensus 86 ~~~~ri~E~~s~G--IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 86 RGYRRIGEFPSHG--IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CCcEEEeEecCCC--cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 556666666654 346678899999777665432110 1 1122233345788889999999888766 45777
Q ss_pred cEEEEEEccCCCEEEEEecCC-------eEEEEeCCCCceeeeee-------CCCCCeEEEEEcCCCCEEEEec-CCCeE
Q 012699 295 AITSLCFNHNGKILAASAVDG-------MIHMFDMSAGLQITGWP-------AHDSAISSILFGPDETSIFSLG-SDGKI 359 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~-~dg~i 359 (458)
.|..+++.++|..++..-..| .|.+++.. +.+..+. .-.+.+-+|++++++.++++.+ .-+.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 899999999997666654443 23444432 2222222 2346789999999998876555 47889
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
.+||..++...... .-..+..++..+++ +++.+..|.+..
T Consensus 242 ~~~d~~tg~~~~~~-----------~l~D~cGva~~~~~--f~~ssG~G~~~~ 281 (305)
T PF07433_consen 242 AVWDAATGRLLGSV-----------PLPDACGVAPTDDG--FLVSSGQGQLIR 281 (305)
T ss_pred EEEECCCCCEeecc-----------ccCceeeeeecCCc--eEEeCCCccEEE
Confidence 99999886443211 12235566666666 444455554433
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=1.2e-06 Score=74.70 Aligned_cols=223 Identities=16% Similarity=0.116 Sum_probs=133.1
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
+|.|..||..+|+.+............... ..+++..+++++.+ +.+..||..+++.+..+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~-------------~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGD-------------GNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETT-------------SEEEEEETTTSEEEEEEECSSC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCC-------------CEEEEEECCCCCEEEEeecccc
Confidence 688999999999988877653211222211 22344555555444 5999999999999988876433
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-eCCCC---CeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-PAHDS---AISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
.... . ...+..+++++.++.++.+|..+|+.+... ..... .........++..++.+..++.|..+|+++++
T Consensus 68 ~~~~--~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 68 ISGA--P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp GGSG--E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred ccce--e--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 1111 1 223556777778889999999999998874 32211 12223333347788888889999999999865
Q ss_pred eeEEeecCCcccCCCC--CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe
Q 012699 369 QVLWTRNCSRFCDPES--SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 446 (458)
. ++............ ....+..-....++ .+++++.++.+.-+|+.+++...... ...+..+ ..+++..|+.+
T Consensus 144 ~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 144 L-LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp E-EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEE
T ss_pred E-EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEE
Confidence 5 33332211110000 00111222222244 77777777754444998887543222 2223321 34567777777
Q ss_pred cCCCcEEEEeCC
Q 012699 447 SADHSVQVMSLS 458 (458)
Q Consensus 447 ~~dg~v~iw~l~ 458 (458)
+.++.|..||+.
T Consensus 219 ~~~~~l~~~d~~ 230 (238)
T PF13360_consen 219 SSDGRLYALDLK 230 (238)
T ss_dssp ETTTEEEEEETT
T ss_pred eCCCEEEEEECC
Confidence 799999999974
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=1.2e-06 Score=80.64 Aligned_cols=261 Identities=13% Similarity=0.118 Sum_probs=150.9
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCCC--------ce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGT--------EI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
+..++.++.+|.+.-+|..+++............ .+ ..+.. .+..++.++.+|.+..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 4467777777888888887776543222111000 00 01121 245677788899999999999998877
Q ss_pred ccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCC
Q 012699 230 LNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNG 305 (458)
Q Consensus 230 ~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~ 305 (458)
...... +.+ .... + ..++.+..+ |.+..+|.++++.+..+........ ..+... .+
T Consensus 146 ~~~~~~---~~ssP~v~-~-~~v~v~~~~-------------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~ 205 (394)
T PRK11138 146 TKVAGE---ALSRPVVS-D-GLVLVHTSN-------------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF 205 (394)
T ss_pred ccCCCc---eecCCEEE-C-CEEEEECCC-------------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence 665431 111 1111 2 233333333 6999999999999887764321000 011111 13
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCC-------CeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS-------AISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
..++.++.+|.+..+|..+++.+...+.... ....+.-+| .+..++.++.+|.+..+|..+++. .|....
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~ 284 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKREY 284 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeecC
Confidence 3577788899999999999887665431110 011112223 345677788899999999987654 443321
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.. ...+ ...+..+++++.++.++.+|..+++...+...-. ....+... .+..|+.++.||.|.+.
T Consensus 285 ~~----------~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 285 GS----------VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred CC----------ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 11 0111 2256678888889999999998876544332111 11222222 24467778888888877
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
|.
T Consensus 351 d~ 352 (394)
T PRK11138 351 NR 352 (394)
T ss_pred EC
Confidence 64
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=9.2e-08 Score=89.83 Aligned_cols=169 Identities=17% Similarity=0.181 Sum_probs=126.7
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
.+..+|+++.+..+....... .+.-+ ..+++++.+|...|+|.+-|.++.+.+.++.+|.+.|..+.. .|+.|+
T Consensus 158 ~li~~Dl~~~~e~r~~~v~a~--~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLi 231 (1118)
T KOG1275|consen 158 KLIHIDLNTEKETRTTNVSAS--GVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLI 231 (1118)
T ss_pred heeeeecccceeeeeeeccCC--ceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEE
Confidence 788899998877776654332 24433 346889999999999999999999999999999999976654 688999
Q ss_pred EecC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCCcc
Q 012699 352 SLGS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 352 ~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
+++. |..|++||++..+.. .+........-+.|.|. ...+++++..|...+-|..+...+
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral----------~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRAL----------SPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred Eeecccccccccccchhhhhhhhhhhcc----------CCcccccCchhhhhcccccceEEEEecccceeeccccccCCC
Confidence 9875 556899999976432 22222333355677775 467888999999999994433222
Q ss_pred -c---ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 422 -M---RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 422 -~---~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
. ........+..++++++++.||.|..+|.|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1 1123445599999999999999999999999995
No 308
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=8.4e-09 Score=59.44 Aligned_cols=39 Identities=36% Similarity=0.571 Sum_probs=36.8
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
++++.++.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.2e-09 Score=99.99 Aligned_cols=223 Identities=12% Similarity=0.160 Sum_probs=153.5
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE-cCCC-c
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADG-G 215 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg-~ 215 (458)
+..++++.|+...+|++|+-+.++|+.|+..|.|+++++.++.... ....|++.++.+.-+ .++..+++. +... .
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--s~ncH~SavT~vePs-~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--SVNCHQSAVTLVEPS-VDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--ccccccccccccccc-CCcceeeeeccccCch
Confidence 5677889999999999999999999999999999999999987653 455678889888877 555555544 3333 5
Q ss_pred EEEEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC--CC
Q 012699 216 IKAWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG--ED 292 (458)
Q Consensus 216 i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~ 292 (458)
..+|++.+ +...+++. .-.++.|+.....-+.+... ....+||++++.+..++-.. ..
T Consensus 1169 saLW~~~s~~~~~Hsf~------ed~~vkFsn~~q~r~~gt~~-------------d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD------EDKAVKFSNSLQFRALGTEA-------------DDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred HHHhccccccCcccccc------ccceeehhhhHHHHHhcccc-------------cceEEEecccCcHHHHhcCcchhh
Confidence 67898764 33333333 33456666654433333333 28899999998887663211 11
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
...-++..|+|+.++++- || .+||.+..+.++.|...+..+ .=.|+|+|..++..+ -|||+++.+.+..
T Consensus 1230 ~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred hhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 223478899999887763 55 689999888777776544322 335999999888765 4899998755433
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVT 404 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 404 (458)
.... .-..+.|+..|..++..
T Consensus 1299 VP~L-----------dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1299 VPSL-----------DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred Cccc-----------cceEEEeccCccchhhh
Confidence 2221 12567788888776643
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=6.4e-08 Score=77.55 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=93.0
Q ss_pred CCCEEEEEecCCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecC-----CCeEEEEeccCCCeeEEeecCC
Q 012699 304 NGKILAASAVDGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGS-----DGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 304 ~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
.++.++++..||.+.+++.+.-..+ .++..-...-.+.++...++.+.++.. -+..+.|+++..+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~------ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI------ 173 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc------
Confidence 4567899999999999998752111 111111111112222234444443321 2235566665433221
Q ss_pred cccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCC-eEEEecCCCcEEE
Q 012699 378 RFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLP-MFLTGSADHSVQV 454 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-~l~s~~~dg~v~i 454 (458)
........+.+++-+|.. +.+++|+.+|.+-+||.+....+..+. .|+.+++.+-|+|... .|.++++||.+.-
T Consensus 174 ---~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 174 ---PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred ---ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 111223348889999955 566778889999999998875555444 7999999999999765 8999999999999
Q ss_pred EeC
Q 012699 455 MSL 457 (458)
Q Consensus 455 w~l 457 (458)
||-
T Consensus 251 wda 253 (319)
T KOG4714|consen 251 WDA 253 (319)
T ss_pred EcC
Confidence 984
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=5e-06 Score=77.16 Aligned_cols=243 Identities=8% Similarity=-0.022 Sum_probs=145.4
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEe-cCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699 158 SGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE-CKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235 (458)
Q Consensus 158 ~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 235 (458)
||++|+.-.. +..|..-+++..+... ....+....+..+.|. .++..+++.++..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~-i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~---------------------- 196 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDK-ITELPNVQGIHGLRPQKIPRTGYVFCNGEF---------------------- 196 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeece-eEeCCCccCccccCccccCCccEEEeCccc----------------------
Confidence 6778777553 4555555655544332 1223333445555554 2455666655432
Q ss_pred CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-
Q 012699 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD- 314 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 314 (458)
.+-+.|+|+.+...+... +.+.+.|..+.+....+...+. ...++++|+|+++++.+.+
T Consensus 197 -----~~PlpnDGk~l~~~~ey~------------~~vSvID~etmeV~~qV~Vdgn---pd~v~~spdGk~afvTsyNs 256 (635)
T PRK02888 197 -----RIPLPNDGKDLDDPKKYR------------SLFTAVDAETMEVAWQVMVDGN---LDNVDTDYDGKYAFSTCYNS 256 (635)
T ss_pred -----ccccCCCCCEeeccccee------------EEEEEEECccceEEEEEEeCCC---cccceECCCCCEEEEeccCc
Confidence 112334555443332222 5888889998888877766553 4667899999999888642
Q ss_pred ---CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC----CCeeEEeecCCcccCCCCCCC
Q 012699 315 ---GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN----QGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 315 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~ 387 (458)
.++...+......+..+... .+ -++.++|++... .++.|.+.|..+ ....... .....
T Consensus 257 E~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y---------IPVGK 321 (635)
T PRK02888 257 EEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY---------VPVPK 321 (635)
T ss_pred ccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE---------EECCC
Confidence 22333332222211111100 00 123457877665 367899999887 2222211 12344
Q ss_pred ceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcc-----------cccCCCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 388 CRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASG-----------MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
.++.+.++|||+++++++. ++++.+.|+...+.. .....-.......+|.++|....|---|..|-.|
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence 5788999999999988876 789999999875431 1111223456678999999988888899999999
Q ss_pred eCC
Q 012699 456 SLS 458 (458)
Q Consensus 456 ~l~ 458 (458)
+++
T Consensus 402 n~~ 404 (635)
T PRK02888 402 NIE 404 (635)
T ss_pred ehH
Confidence 973
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.8e-07 Score=84.01 Aligned_cols=273 Identities=16% Similarity=0.108 Sum_probs=157.5
Q ss_pred EEEeCCCCCEEEEEe----CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 152 CCRFSSSGNNIASAS----VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
-.+|+|...++|.++ ..|.|.|| .+++++.. ....+-.+.+++|+ +..-.|+.|-.-|.+.+|...+.+..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr---~Vt~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQR---DVTYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCc---ccccceehhhhccC-hHHHHHhhccccceeEEEecCCceee
Confidence 357899888888775 45788888 45666432 12223345779999 66778888888999999998876655
Q ss_pred eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----------------EeecCC
Q 012699 228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT----------------VLPLGE 291 (458)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~----------------~~~~~~ 291 (458)
.....+. .++..+.|+++|..++++..- |.+.+|.......++ .+.+..
T Consensus 95 tv~~th~--a~i~~l~wS~~G~~l~t~d~~-------------g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~ 159 (1416)
T KOG3617|consen 95 TVVETHP--APIQGLDWSHDGTVLMTLDNP-------------GSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSY 159 (1416)
T ss_pred eeccCCC--CCceeEEecCCCCeEEEcCCC-------------ceeEEEEeeeccccccchhhhhHhhceeeEEEEecCC
Confidence 4444443 789999999999999998876 588888765211111 111100
Q ss_pred ---------------CCCcEE------------EE--EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699 292 ---------------DPPAIT------------SL--CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL 342 (458)
Q Consensus 292 ---------------~~~~i~------------~~--~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 342 (458)
....+- ++ .-.|+|..++.++.+|+|+-.|-. +++....+.. +. ..+-
T Consensus 160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d-S~-vQmL 236 (1416)
T KOG3617|consen 160 DREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD-SE-VQML 236 (1416)
T ss_pred ChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEcc-ch-HHHH
Confidence 000000 00 012566778888888888888743 4444433321 11 1233
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCeeEE---------------eecC--------CcccCCCCCCCceeEEEEccCCC
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLW---------------TRNC--------SRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------~~~~--------~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
|.+-..-++..-.+-++.++-+...+.... ...| +...........+.+++++..+.
T Consensus 237 f~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~ 316 (1416)
T KOG3617|consen 237 FMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI 316 (1416)
T ss_pred HhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce
Confidence 333322333222222222322221100000 0000 00001122455789999999999
Q ss_pred EEEEEeCCccEEEEEccCC-C------cccccC---CCCCcEEEEEECCCCCeEEEec
Q 012699 400 RLLVTSGSVRAPIYQVRGH-A------SGMRTL---PHGAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 400 ~l~~~~~~~~i~i~~~~~~-~------~~~~~~---~h~~~v~~~~~~~~~~~l~s~~ 447 (458)
.|..|...|.+.+|---.. . ....+. .-.+.|+.+.|.|-.+.++.-+
T Consensus 317 ~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 317 RLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 9999999999999964322 1 112222 2346899999999766555444
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.76 E-value=4.5e-06 Score=81.46 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=140.1
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
+.|.++.|..+...++.+..+|.|.+-|..+.... ........|.+++|+ ++++.++..+..+++.+-+- +-.++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e---ivg~vd~GI~aaswS-~Dee~l~liT~~~tll~mT~-~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE---IVGNVDNGISAASWS-PDEELLALITGRQTLLFMTK-DFEPI 143 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee---eeeeccCceEEEeec-CCCcEEEEEeCCcEEEEEec-cccch
Confidence 67999999999999999999999999887766543 233346789999999 78888888888777766532 11111
Q ss_pred eeccCC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEEEEcc
Q 012699 228 CDLNTT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 228 ~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~ 303 (458)
...... ...+....+-|-.....+- |+. |.....+...... ........| =+.+.|--
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfr-gs~--------------gr~~~~~~~~~ek~~~~~~~~~~---~~~IsWRg 205 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFR-GSE--------------GRQAARQKIEKEKALEQIEQDDH---KTSISWRG 205 (1265)
T ss_pred hccccccccccccccceecccccceeee-cch--------------hhhcccccccccccccchhhccC---CceEEEcc
Confidence 111110 0001112222222111111 000 1111111111000 011111222 36789999
Q ss_pred CCCEEEEE-----ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeec
Q 012699 304 NGKILAAS-----AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 304 ~~~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~ 375 (458)
||.++++. ...+.|+|||-+ +..-..-....+.=.+++|-|.|..+++-. .|+.|.+|.-+.....
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg----- 279 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG----- 279 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc-----
Confidence 99999983 223789999976 443222222233446799999999888753 3667888886543211
Q ss_pred CCcccCCC-CCCCceeEEEEccCCCEEEE---EeCCccEEEEEccCC
Q 012699 376 CSRFCDPE-SSKSCRHEMALDVNGRRLLV---TSGSVRAPIYQVRGH 418 (458)
Q Consensus 376 ~~~~~~~~-~~~~~v~~~~~s~~g~~l~~---~~~~~~i~i~~~~~~ 418 (458)
.+..+. .....+..++|+.++..|++ ......|++|...+.
T Consensus 280 --~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 280 --EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 111111 22233889999999999998 444456999988654
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.6e-06 Score=77.36 Aligned_cols=212 Identities=12% Similarity=0.184 Sum_probs=137.5
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
+++..++.|+.+|.|.+++-. -+....++...+. .+..+....+...+++.+.|.... .-.+++|+++..
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~n--------p~llkiw~lek~ 102 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGN--------PVLLKIWDLEKV 102 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehheecchh-hhhHhhcccCceEEEEEeecCCCC--------ceEEEEeccccc
Confidence 678889999999999888632 3333555555432 345555555556788877775311 127999998643
Q ss_pred ---c---ee---EEee--cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC----CceeeeeeCCCCCeEEEEEcCC
Q 012699 282 ---K---AM---TVLP--LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA----GLQITGWPAHDSAISSILFGPD 346 (458)
Q Consensus 282 ---~---~~---~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~~ 346 (458)
. +. ..++ .+..+.++.+++.+.+-+.+|+|-.+|.|..+.-.- +....-......+|+.+++..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 1 22 1121 222456789999999999999999999999986321 2212222234679999999988
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL- 425 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~- 425 (458)
++.++....-..|.+|.+.... + .......++..+.+..+++....+++++.+ .+++|+.++......+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~-p-------~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT-P-------SLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred CceeEEEEecceeEEEEecCCC-c-------ceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecC
Confidence 8873334445579999998543 1 122233566678888888876645555444 49999998877666665
Q ss_pred CCCCcEE
Q 012699 426 PHGAAIT 432 (458)
Q Consensus 426 ~h~~~v~ 432 (458)
+|.....
T Consensus 254 g~kk~~~ 260 (933)
T KOG2114|consen 254 GEKKEML 260 (933)
T ss_pred CCeEEEE
Confidence 6655443
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.8e-06 Score=71.34 Aligned_cols=250 Identities=12% Similarity=0.075 Sum_probs=139.1
Q ss_pred ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
..++..|..++|+|.+..++..++.+..|++.|+++...+..+..+ ..+++++|..+....+.++..+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~---~~~wSC~wDlde~h~IYaGl~n--------- 257 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLDERHVIYAGLQN--------- 257 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc---CCceeeeeccCCcceeEEeccC---------
Confidence 3455679999999877778999999999999999999888877766 5799999999988777777665
Q ss_pred ccceeEEEEECCCCcee-EEeecCCCCCcEEEEEE------ccCCCEEEEEecCCeEEEEeCCC--Cceeeeee-CCCCC
Q 012699 268 WGFASLTVWNMKTWKAM-TVLPLGEDPPAITSLCF------NHNGKILAASAVDGMIHMFDMSA--GLQITGWP-AHDSA 337 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~-~~~~~ 337 (458)
|.|.+||++..+.. ..+...-...+|..++. .+.|.+|+....+ +..|++.- +.....++ +..+.
T Consensus 258 ---G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 258 ---GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ---ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 89999999864432 22211112223444332 2334455554443 45555432 22222222 22455
Q ss_pred eEEEEEcCCCCEEE-EecCCCe------EEEE-eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCCc
Q 012699 338 ISSILFGPDETSIF-SLGSDGK------IIEW-SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGSV 408 (458)
Q Consensus 338 v~~~~~~~~~~~l~-~~~~dg~------i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~ 408 (458)
..++++.+-.+.++ +.-.+.+ +-.. |..++..+...+.. .+.........-..+.-.++.++++. +...+
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~-~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT-YFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccc-ccCCcccccccccceeccccccEEEEecCCcc
Confidence 56666666444443 3222110 1110 11111111111000 00000000011112223445555554 44458
Q ss_pred cEEEEEccCCCcccccCCCCCcEEEEEECCC-C-CeEEEecCCCcEEEEeC
Q 012699 409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPT-L-PMFLTGSADHSVQVMSL 457 (458)
Q Consensus 409 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~-~~l~s~~~dg~v~iw~l 457 (458)
.+.+||..+.+... ..+-..+|.+++.... + .+|++-. |..++||..
T Consensus 412 ~lil~D~~s~evvQ-~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~ 460 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQ-TLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKN 460 (463)
T ss_pred eeEEeccchhheee-ecccCcceeecceeecCCcchhhhee-cceEEEEec
Confidence 89999998875443 3345588888876543 2 3676666 447888764
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=79.44 Aligned_cols=149 Identities=12% Similarity=0.205 Sum_probs=108.6
Q ss_pred EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-----eeeeccCCCCCC
Q 012699 163 ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-----VVCDLNTTDAFP 237 (458)
Q Consensus 163 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~~ 237 (458)
++.+.+-.|-+-|++++-.. .+...+.|.++.|. ..+++++.|+.+|.|..+|++.+. +...+. |.+
T Consensus 228 fs~G~sqqv~L~nvetg~~q----sf~sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---h~S 299 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ----SFQSKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---HDS 299 (425)
T ss_pred ecccccceeEEEEeeccccc----ccccchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---cCc
Confidence 55566777888898887543 33456788999998 778899999999999999998752 222222 236
Q ss_pred ceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCC--cEEEEEEccCCCEEEEE
Q 012699 238 SVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPP--AITSLCFNHNGKILAAS 311 (458)
Q Consensus 238 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~--~i~~~~~~~~~~~l~~~ 311 (458)
.|+++.... +++.+.+.+.+ |.|++||++--++ +..+ .+|.. .-.-+-..+....++++
T Consensus 300 svtslq~Lq~s~q~LmaS~M~-------------gkikLyD~R~~K~~~~V~qY--eGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASDMT-------------GKIKLYDLRATKCKKSVMQY--EGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred chhhhhhhccccceEeeccCc-------------CceeEeeehhhhcccceeee--ecccccccccccccccccceEEEc
Confidence 788887777 67777777766 6999999987665 4444 45522 22233445667788889
Q ss_pred ecCCeEEEEeCCCCceeeeeeCC
Q 012699 312 AVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
+.|...++|.++.+..+.+++..
T Consensus 365 GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cCeeEEEEEecccCceeeccCCC
Confidence 99999999999999998887643
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=7.1e-07 Score=83.44 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=92.5
Q ss_pred eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699 239 VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318 (458)
Q Consensus 239 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 318 (458)
.+-..|+|..++++.++.... ..|.+.||- .+|++....+.+- .+++++|+|..-.|+.|-.-|.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~e---------r~GSVtIfa-dtGEPqr~Vt~P~---hatSLCWHpe~~vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPE---------RGGSVTIFA-DTGEPQRDVTYPV---HATSLCWHPEEFVLAQGWEMGVSD 84 (1416)
T ss_pred ccccccCCCCceeEEEEecCC---------CCceEEEEe-cCCCCCcccccce---ehhhhccChHHHHHhhccccceeE
Confidence 445689999999998876532 226888873 4555555444333 368899999988899999999999
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+|...+.+.......|..+|..+.|||+|..++++..-|.+.+|....
T Consensus 85 v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 85 VQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 999888777767778999999999999999999999999999998873
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.67 E-value=3.1e-08 Score=89.38 Aligned_cols=202 Identities=13% Similarity=0.203 Sum_probs=134.7
Q ss_pred CCCCeEEEEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC----CCcEEEE
Q 012699 146 HTSPISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA----DGGIKAW 219 (458)
Q Consensus 146 h~~~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~~w 219 (458)
....+.|+++.-+ ...++.|..+|.|.+-.+..........+..+....++++|++-+.+.|++|-. |..+.+|
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456778877654 346888999999999887765544344455566788999999888888888743 5689999
Q ss_pred EcCCC--ceee--eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCC
Q 012699 220 NVDAK--RVVC--DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPP 294 (458)
Q Consensus 220 d~~~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~ 294 (458)
|+.++ .+.. .+.. ........++|..+.+.+.+|...+ .++++|++..- ....+ ...
T Consensus 135 di~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr-------------~~~ifdlRqs~~~~~sv----nTk 196 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSR-------------SVHIFDLRQSLDSVSSV----NTK 196 (783)
T ss_pred ecccccCCCcccccccc-ccccCccccccccCcchhhcccccc-------------hhhhhhhhhhhhhhhhh----hhh
Confidence 99887 2221 1222 1123455788888888888888775 89999998422 22222 122
Q ss_pred cEEEEEEcc-CCCEEEEEecCCeEEEEe-CCCC-ceeeeeeCCC----CCeEEEEEcCCCC-EEEEecC-CCeEEEEecc
Q 012699 295 AITSLCFNH-NGKILAASAVDGMIHMFD-MSAG-LQITGWPAHD----SAISSILFGPDET-SIFSLGS-DGKIIEWSLQ 365 (458)
Q Consensus 295 ~i~~~~~~~-~~~~l~~~~~dg~i~v~d-~~~~-~~~~~~~~~~----~~v~~~~~~~~~~-~l~~~~~-dg~i~iwd~~ 365 (458)
.+..+..+| .+.|+++-. ||.|.+|| .++- .++..+...+ ..+..++|.|... .+++.+. .++|+++|+.
T Consensus 197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 456677888 677877754 99999999 4332 2333322222 2489999999433 4555555 6789999987
Q ss_pred C
Q 012699 366 N 366 (458)
Q Consensus 366 ~ 366 (458)
.
T Consensus 276 ~ 276 (783)
T KOG1008|consen 276 V 276 (783)
T ss_pred c
Confidence 4
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.66 E-value=1.7e-08 Score=91.06 Aligned_cols=233 Identities=16% Similarity=0.236 Sum_probs=142.3
Q ss_pred ceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccc
Q 012699 193 EIMSLEWECKS-DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 193 ~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.+.|+++.... ...++.|..+|.|.+-.++...-...-..+.....+++++|.+-.. .++++ .+... .+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhr--------nd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAG-LDKHR--------ND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhh-hhhhc--------cc
Confidence 35566655333 3578889999999998877554332222233446788999998654 44444 33211 11
Q ss_pred eeEEEEECCCC--ceeEEeecCC-CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-C
Q 012699 271 ASLTVWNMKTW--KAMTVLPLGE-DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP-D 346 (458)
Q Consensus 271 g~i~i~d~~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~ 346 (458)
-.+.|||+.++ .+.....+.. ......+++|..+.+++.+|.....+.++|++... .......+..+..+...| .
T Consensus 129 s~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 129 SSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred CCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCC
Confidence 38999999876 3332222222 33456688999899999999999999999998422 111122244567788888 7
Q ss_pred CCEEEEecCCCeEEEEe-ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCcc--
Q 012699 347 ETSIFSLGSDGKIIEWS-LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASG-- 421 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~-- 421 (458)
+.++++.. ||.|.+|| .++-+.++.. ...........+..++|.|-.. .+++.. ..++|+++++......
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~~----i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s 282 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQI----ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGS 282 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHHH----HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccc
Confidence 77887665 99999999 4443333221 1112222334688999999543 344444 4578999987532110
Q ss_pred ------------cccCCCC--CcEEEEEECCCC
Q 012699 422 ------------MRTLPHG--AAITTVDWHPTL 440 (458)
Q Consensus 422 ------------~~~~~h~--~~v~~~~~~~~~ 440 (458)
..+.... ..|.++.||+..
T Consensus 283 ~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 283 ANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccccceeeecccccccccccccceeecCcCcCC
Confidence 1111122 578888888766
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.61 E-value=1.7e-07 Score=78.22 Aligned_cols=144 Identities=16% Similarity=0.259 Sum_probs=110.1
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
-.+.|.++.|...++++..|+.+|.|...|++.... ......+.|.+.|+++..-.-++++|++.+.+|.|++||.+.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 456789999998899999999999999999986522 223345678888888877634788999999999999999987
Q ss_pred Cce---eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC--CcEEE
Q 012699 224 KRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--PAITS 298 (458)
Q Consensus 224 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~~i~~ 298 (458)
-++ +.++..|-....-.-+...+....+++++.| ...++|.++.+..+.++++.... ..+.+
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdD-------------cytRiWsl~~ghLl~tipf~~s~~e~d~~s 397 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDD-------------CYTRIWSLDSGHLLCTIPFPYSASEVDIPS 397 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCe-------------eEEEEEecccCceeeccCCCCccccccccc
Confidence 666 7777777655555556677777888888877 49999999999999888654322 23444
Q ss_pred EEEc
Q 012699 299 LCFN 302 (458)
Q Consensus 299 ~~~~ 302 (458)
++|.
T Consensus 398 v~~~ 401 (425)
T KOG2695|consen 398 VAFD 401 (425)
T ss_pred eehh
Confidence 5554
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1e-05 Score=76.10 Aligned_cols=182 Identities=10% Similarity=0.127 Sum_probs=116.5
Q ss_pred eeeeeccCCCC-eEEEEeCCCCCEEEEEeCCCc-----EEEEecCCCCCCC----c----ccc---ccCCCceEEEEEec
Q 012699 139 FLETFLGHTSP-ISCCRFSSSGNNIASASVDGT-----VRIWTYDSSTPAS----R----NAT---IYCGTEIMSLEWEC 201 (458)
Q Consensus 139 ~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~----~----~~~---~~~~~~v~~~~~~~ 201 (458)
.++.++.+... |..+....+..+|++.+.|+. ++||+++..+... . ... .....++.+++.+
T Consensus 56 ~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs- 134 (933)
T KOG2114|consen 56 LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVS- 134 (933)
T ss_pred eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEE-
Confidence 44566677766 555555445578888887754 8999986542211 0 011 1124578888888
Q ss_pred CCCeEEEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCCe-EEEeecccCCCCcceeeccceeEEEEEC
Q 012699 202 KSDRLLLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEPI-FVSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
.+-..+++|-.+|.|..+.-+ ..+-.+....+....+|+.+++..++.. ++++... .|.+|.+
T Consensus 135 ~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~--------------~V~~y~l 200 (933)
T KOG2114|consen 135 EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE--------------QVMLYSL 200 (933)
T ss_pred ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc--------------eeEEEEe
Confidence 778889999999999988532 2222222333344478999999998886 3333332 8999999
Q ss_pred CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCC
Q 012699 279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSA 337 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~ 337 (458)
.... ...-....+...++|..+++....|++++ +..+.+||.....+-..+. +|...
T Consensus 201 ~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 201 SGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred cCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 8444 22222455667789999987655466655 3469999988666666665 55543
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=8.6e-05 Score=63.89 Aligned_cols=266 Identities=11% Similarity=0.119 Sum_probs=158.4
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE----------cCCCcEEEEEcCCCceeeeccCCCC---
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG----------TADGGIKAWNVDAKRVVCDLNTTDA--- 235 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~--- 235 (458)
+.+.++|.++++.+.... .+-...+..+ ++++.++++ -..-.|.+||..+......+..+..
T Consensus 17 ~rv~viD~d~~k~lGmi~----~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID----TGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEE----EESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEee----cccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 468888877765432111 1122334556 566666653 2344799999999888776655432
Q ss_pred --CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699 236 --FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313 (458)
Q Consensus 236 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (458)
......+.++.++++++....... ..|.+.|+...+.+.++...+. ..+--+++ +-|.+-+.
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa-----------~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~-~~F~~lC~ 155 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPA-----------TSVTVVDLAAKKVVGEIDTPGC----WLIYPSGN-RGFSMLCG 155 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSS-----------EEEEEEETTTTEEEEEEEGTSE----EEEEEEET-TEEEEEET
T ss_pred eecccccceEEccCCcEEEEEccCCC-----------CeEEEEECCCCceeeeecCCCE----EEEEecCC-CceEEEec
Confidence 123345788889998877654432 4999999999999998876542 22222222 45777788
Q ss_pred CCeEEEEeCC-CCceeeee----eCCCCCeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CC
Q 012699 314 DGMIHMFDMS-AGLQITGW----PAHDSAIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PE 383 (458)
Q Consensus 314 dg~i~v~d~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~ 383 (458)
||.+.-..+. .|+...+. ..-..++. .-++...+..++.-+.+|.|+--|+....... ......... ..
T Consensus 156 DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~ 234 (342)
T PF06433_consen 156 DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADG 234 (342)
T ss_dssp TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTT
T ss_pred CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccC
Confidence 9999998887 45554322 11122222 33444455566668899999999998654322 111111100 01
Q ss_pred CCCCceeEEEEccCCCEEEEEeCC----------ccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEE-ecCCCc
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGS----------VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLT-GSADHS 451 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~~~dg~ 451 (458)
-..+.-..+++++..+.|++.-.. ..|.++|+.+++.+.++.- ..++.+++.+.+.+ +|++ ...++.
T Consensus 235 WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~ 313 (342)
T PF06433_consen 235 WRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT 313 (342)
T ss_dssp EEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE
T ss_pred cCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe
Confidence 112334458888877666654322 1578888888877666552 34688999999887 6654 456899
Q ss_pred EEEEeC
Q 012699 452 VQVMSL 457 (458)
Q Consensus 452 v~iw~l 457 (458)
+.+||.
T Consensus 314 l~v~D~ 319 (342)
T PF06433_consen 314 LDVYDA 319 (342)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 999985
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.00019 Score=58.31 Aligned_cols=261 Identities=15% Similarity=0.173 Sum_probs=132.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
-|++++.|+..|.+.+-+.+++......... ..|.+-+-...++.++..|+.|++.+..|..+..++...+... .
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~---~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG--~ 136 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL---ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG--G 136 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh---hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC--c
Confidence 3668999999999999999998765432222 2222211112568899999999999999999999888766554 2
Q ss_pred ceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE--EEEccCCCEEEEEecC
Q 012699 238 SVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS--LCFNHNGKILAASAVD 314 (458)
Q Consensus 238 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d 314 (458)
.-.+.+..| ++.+.++... |.+.--..+.... .++-......++.+ ++ -+..+..+.-|
T Consensus 137 ~f~sP~i~~g~~sly~a~t~--------------G~vlavt~~~~~~-~~~w~~~~~~PiF~splc---v~~sv~i~~Vd 198 (354)
T KOG4649|consen 137 TFVSPVIAPGDGSLYAAITA--------------GAVLAVTKNPYSS-TEFWAATRFGPIFASPLC---VGSSVIITTVD 198 (354)
T ss_pred eeccceecCCCceEEEEecc--------------ceEEEEccCCCCc-ceehhhhcCCccccCcee---ccceEEEEEec
Confidence 233344555 3333333222 2222222222110 00000001111111 11 13456666778
Q ss_pred CeEEEEeCCCCceeeeeeCCCCCeEE-EEEc-CCCCEEEEecCCCeEE--------EEeccCCCeeEEeecCCcccCCCC
Q 012699 315 GMIHMFDMSAGLQITGWPAHDSAISS-ILFG-PDETSIFSLGSDGKII--------EWSLQNQGQVLWTRNCSRFCDPES 384 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~-~~~~~l~~~~~dg~i~--------iwd~~~~~~~~~~~~~~~~~~~~~ 384 (458)
|.+.-+| ..|+.+.++. ..++|.. -+-+ |..+.+..+..+..+. +|..+.+........ ++
T Consensus 199 G~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~-p~------ 269 (354)
T KOG4649|consen 199 GVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLS-PK------ 269 (354)
T ss_pred cEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeC-cc------
Confidence 8888787 5566666543 2344321 1111 3334444444443332 344333211110000 00
Q ss_pred CCCceeEEEEc-c---CCCEEEEEeCCccEEEEEccCCCcccccCCCCCc---EEEEEE------CC---CCCeEEEecC
Q 012699 385 SKSCRHEMALD-V---NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA---ITTVDW------HP---TLPMFLTGSA 448 (458)
Q Consensus 385 ~~~~v~~~~~s-~---~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~---v~~~~~------~~---~~~~l~s~~~ 448 (458)
..++++ | ..++|..++.||++.|.-... .+.....|.+. +..+.. +| +| .|+.|+.
T Consensus 270 -----l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~--sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcR 341 (354)
T KOG4649|consen 270 -----LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK--SLAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCR 341 (354)
T ss_pred -----cceeccCCCCcchhhhhhhcCCCcEEEEEecc--cccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEc
Confidence 001111 1 145677888899888774432 22333333333 332222 22 34 4777888
Q ss_pred CCcEEEEeCC
Q 012699 449 DHSVQVMSLS 458 (458)
Q Consensus 449 dg~v~iw~l~ 458 (458)
|..|+-||++
T Consensus 342 DdYv~cldl~ 351 (354)
T KOG4649|consen 342 DDYVRCLDLD 351 (354)
T ss_pred cCeEEEEecc
Confidence 9999999985
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.59 E-value=0.00011 Score=66.92 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=73.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
.....+.+++++|+.+.|+.|+.||.|.+||...+-.... ...-.++.++|+|+|..+++|+..|.+.+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----------ka~~~P~~iaWHp~gai~~V~s~qGelQ~ 325 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----------KAEFIPTLIAWHPDGAIFVVGSEQGELQC 325 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----------eecccceEEEEcCCCcEEEEEcCCceEEE
Confidence 4677899999999999999999999999999876532221 11233678999999999999999999999
Q ss_pred EEccCCCcccc----------------cCCCCCcEEEEEECCCC
Q 012699 413 YQVRGHASGMR----------------TLPHGAAITTVDWHPTL 440 (458)
Q Consensus 413 ~~~~~~~~~~~----------------~~~h~~~v~~~~~~~~~ 440 (458)
||+.-...... ...+......+.|.+..
T Consensus 326 FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 326 FDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred EEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 99864322111 12355677788888543
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.58 E-value=0.00014 Score=68.75 Aligned_cols=205 Identities=12% Similarity=0.144 Sum_probs=119.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC---C-Cce--EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC---G-TEI--MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~v--~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
+..++.++.++.+.-.|..+++.......... . ..+ ..+.. .++..++.++.+|.|.-+|.++|+.+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--WDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--ccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 34677777789999999888876543222111 0 000 01111 1226788888999999999999999887765
Q ss_pred CCCCCc---e-eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC--------------
Q 012699 233 TDAFPS---V-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-------------- 294 (458)
Q Consensus 233 ~~~~~~---v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-------------- 294 (458)
...... + ....+. +..++.++.+... ..+...|.+..+|..+++.+..+.......
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~----~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KKLVIIGSSGAEF----FACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred CCCcCcceEecCCCEEE--CCEEEEecccccc----ccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 532100 1 111122 1334444322100 001123689999999999888776532110
Q ss_pred ----cE-EEEEEccCCCEEEEEecCC------------------eEEEEeCCCCceeeeeeCCCCCeE------EEEEc-
Q 012699 295 ----AI-TSLCFNHNGKILAASAVDG------------------MIHMFDMSAGLQITGWPAHDSAIS------SILFG- 344 (458)
Q Consensus 295 ----~i-~~~~~~~~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~~~~~v~------~~~~~- 344 (458)
.+ ...++.+.+..+++++.++ .|.-+|..+++.+-.++.-..... ...+.
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 01 1345555667888887665 799999999998877652111111 01111
Q ss_pred ---CCCC---EEEEecCCCeEEEEeccCCCeeE
Q 012699 345 ---PDET---SIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 345 ---~~~~---~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
-++. .++.++.+|.+...|.++++..-
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 1333 57888899999999999865443
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.2e-05 Score=75.19 Aligned_cols=185 Identities=15% Similarity=0.233 Sum_probs=130.1
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
...++|++++ +++|+-|.-+|.|++.+..... . ....+... . ..|.++++|+.||.+.+-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~---~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-K---TNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-c---cccccccc------c-cCCceEEEecCCCcEEEeeccCCcc
Confidence 4567777775 5689999999999999876542 1 12222222 3 6799999999999999999988887
Q ss_pred eeeccCCCCCCceeeeeecCC-----CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 227 VCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
..++..+ .++.+++++|+ .+.+++|+.. | +.++.-+-........+....++|.++.|
T Consensus 106 ~~~~df~---rpiksial~Pd~~~~~sk~fv~GG~a-------------g-lvL~er~wlgnk~~v~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 106 ITQYDFK---RPIKSIALHPDFSRQQSKQFVSGGMA-------------G-LVLSERNWLGNKDSVVLSEGEGPIHSIKW 168 (846)
T ss_pred ceeEecC---CcceeEEeccchhhhhhhheeecCcc-------------e-EEEehhhhhcCccceeeecCccceEEEEe
Confidence 7666555 47889999998 4567777664 4 66665432222222234456688999999
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe------EEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI------SSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v------~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
. |+++|-++.+| |+|||+.+++.+..++.....+ ..+.|.++. .|+.|= ..+|++..++.
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIKK 234 (846)
T ss_pred c--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEec
Confidence 6 77899888777 9999999988887776544433 356776665 454444 44788888873
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.57 E-value=8.8e-05 Score=67.04 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=147.7
Q ss_pred CCCCCEEEEEe---------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 156 SSSGNNIASAS---------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 156 ~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
|||+++++... ..+.+.++|+.+++...... ....+....|+ ++++.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP---PPPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----EETTBSEEEE--SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC---Cccccccceee-cCCCeeEEEe-cCceEEEECCCCCe
Confidence 56776665532 24678899998865432111 14678889999 5566666654 56899999887754
Q ss_pred eeeccCCCC---------------CCceeeeeecCCCCeEEEeecccCCCCcc------------------e---eecc-
Q 012699 227 VCDLNTTDA---------------FPSVLDLKCSPVEPIFVSAAASRRYGSSN------------------I---YSWG- 269 (458)
Q Consensus 227 ~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~---~~~~- 269 (458)
.+....... ...-..+-|+|+++.++....|...-... . .+..
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~n 155 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPN 155 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcC
Confidence 432221100 12345688999999998877665311000 0 0111
Q ss_pred -ceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceeeeeeC-CCC---
Q 012699 270 -FASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQITGWPA-HDS--- 336 (458)
Q Consensus 270 -~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~-~~~--- 336 (458)
.-.+.++|+.+++....-.. ......+..+.|.++++.|++.-.+ ..+.++|..++.....+.. ...
T Consensus 156 p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~ 235 (353)
T PF00930_consen 156 PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD 235 (353)
T ss_dssp -EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS
T ss_pred CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee
Confidence 12566788887765432211 2334578999999999845444332 2577778877655333221 122
Q ss_pred CeEEEEEc-CCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce-eEEEEccCCCEEEE-EeCC--c--
Q 012699 337 AISSILFG-PDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR-HEMALDVNGRRLLV-TSGS--V-- 408 (458)
Q Consensus 337 ~v~~~~~~-~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~-~~~~--~-- 408 (458)
.-....|. +++. +|.....||.-.+|-+......... .....-.| ..+.++++++.|+. +..+ .
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~--------lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ--------LTSGDWEVTSILGWDEDNNRIYFTANGDNPGER 307 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE--------SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSB
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec--------cccCceeecccceEcCCCCEEEEEecCCCCCce
Confidence 22345554 6555 4445556776555555433322111 11223345 34788998877664 4432 2
Q ss_pred cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 409 RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 409 ~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
.++..++.....+..+......-..+.|||++++++-
T Consensus 308 ~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 308 HLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred EEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 3444555512233333322222279999999997664
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=2e-06 Score=81.23 Aligned_cols=192 Identities=12% Similarity=0.204 Sum_probs=140.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
++..++-|+-...+..+|+.+.+...... .....+.-+. .+++.+.+|...|+|.+-|..+.+.++++..|. +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs--~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS--G 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeeccc--c
Confidence 34467777777778888888776543211 1222355555 568899999999999999999999999998886 4
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCe
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGM 316 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~ 316 (458)
.+.+ |.-.|+.+++++...+.....++ ..|++||++..+.+.-+.+...+ .-+.|.|. ...+++.+..|.
T Consensus 219 siSD--fDv~GNlLitCG~S~R~~~l~~D----~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 219 SISD--FDVQGNLLITCGYSMRRYNLAMD----PFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ceee--eeccCCeEEEeeccccccccccc----chhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccc
Confidence 5554 45568899999987765555444 38999999998877766544332 45677884 457888889999
Q ss_pred EEEEe---CCCC-ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 317 IHMFD---MSAG-LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 317 i~v~d---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
..+.| +.+. ..+..+......+..+.++++++.++.+..+|.|.+|.-.
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 99999 3332 1223333444559999999999999999999999999844
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.57 E-value=5.2e-06 Score=77.08 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=118.9
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
..+.+.+.|.++.+...++.... ....+.++|+++++++.+.+...+ ..+...+..+......+....
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNsE~G---------~tl~em~a~e~d~~vvfni~~ 280 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNSEEG---------VTLAEMMAAERDWVVVFNIAR 280 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCcccC---------cceeeeccccCceEEEEchHH
Confidence 34667788888887777766653 456788999999998886432211 244444433322222222111
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-----CceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEecc
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-----GLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQ 365 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 365 (458)
+ -++.++|++...+ ++.|.+.|.++ .+.+..+. -......+.++|||+++++++. +.++.+.|+.
T Consensus 281 ----i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 281 ----I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred ----H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEECh
Confidence 0 1334578877763 67899999988 34455554 3556789999999998876665 8999999999
Q ss_pred CCCeeEEeec--CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 366 NQGQVLWTRN--CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 366 ~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
+.+....... .................+|+++|+...+-.-|.+|..|++..
T Consensus 352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 7654221100 000111112344566789999999888888899999999875
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.55 E-value=8.3e-05 Score=73.02 Aligned_cols=235 Identities=13% Similarity=0.154 Sum_probs=138.4
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..|.++.|. .+.+.++.+...|.|.+-|.++......-... ..|.+++|+||+..++..+..
T Consensus 69 ~~i~s~~fl-~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~-------------- 130 (1265)
T KOG1920|consen 69 DEIVSVQFL-ADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGR-------------- 130 (1265)
T ss_pred cceEEEEEe-cccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCC--------------
Confidence 579999998 77778888899999999988877654332222 579999999999998888765
Q ss_pred eEEEEECCCCceeEEeecCCC---CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEEEEcCCC
Q 012699 272 SLTVWNMKTWKAMTVLPLGED---PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSILFGPDE 347 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~~ 347 (458)
..-++...+..++....+... .+....+-|-.....| -|+ .|.....+....+. ...... .+.=++|.|--||
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQ-DDHKTSISWRGDG 207 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhh-ccCCceEEEccCC
Confidence 333444444344333222110 1111222232211111 111 11111111111000 000011 2223568999999
Q ss_pred CEEEEe-----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCC
Q 012699 348 TSIFSL-----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHA 419 (458)
Q Consensus 348 ~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~ 419 (458)
+++++. .....|++||-. + .+... .+.....-.+++|-|.|..+++.-. ++.|.++.-++..
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g-~Lns~--------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-G-ALNST--------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-c-hhhcc--------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 999873 233789999987 2 11110 1122334567999999999988643 5679999887653
Q ss_pred cccc---cCCCCCcEEEEEECCCCCeEEE---ecCCCcEEEEeC
Q 012699 420 SGMR---TLPHGAAITTVDWHPTLPMFLT---GSADHSVQVMSL 457 (458)
Q Consensus 420 ~~~~---~~~h~~~v~~~~~~~~~~~l~s---~~~dg~v~iw~l 457 (458)
.-.. ......+|..++|+.++..||. ......|++|-+
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 2211 1122344999999999999987 555666999975
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.4e-06 Score=74.51 Aligned_cols=168 Identities=15% Similarity=0.215 Sum_probs=107.4
Q ss_pred EEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEE
Q 012699 273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSI 350 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 350 (458)
+++.+..+.+....+ ..+...|..++|+|... ++..++.+..|+|.|+++...+..+..+ ..+++++|.-|. .++
T Consensus 175 v~~l~~~~fkssq~l--p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL--PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred eEEeccCCcchhhcc--cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 777777776665533 45667899999999765 7888999999999999999888888887 889999998865 467
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---ccCCC
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---RTLPH 427 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---~~~~h 427 (458)
+.|-..|.|.+||++....+...........+.-+-.++..-...+.|.+|+....+ ...|++....... ...+.
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 788889999999999765443221111111110011111111334455566555444 4556554332211 22244
Q ss_pred CCcEEEEEECCCCC-eEEE
Q 012699 428 GAAITTVDWHPTLP-MFLT 445 (458)
Q Consensus 428 ~~~v~~~~~~~~~~-~l~s 445 (458)
.+...+++.++..+ .|+|
T Consensus 330 pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLT 348 (463)
T ss_pred CcceeeeeecCccceEEEE
Confidence 56777777777555 4444
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.52 E-value=4.2e-05 Score=70.63 Aligned_cols=167 Identities=16% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF 102 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 102 (458)
|+..|.--++ ...+++++-|+.-|.+.+++...+.....- ..| ..+...+...+..+.++|.|+..|.|.++.+..
T Consensus 32 ~~~~v~lTc~-dst~~~l~~GsS~G~lyl~~R~~~~~~~~~--~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCV-DATEEYLAMGSSAGSVYLYNRHTGEMRKLK--NEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEe-ecCCceEEEecccceEEEEecCchhhhccc--ccC-ccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 5556666667 779999999999999999988877554111 111 345556667777889999999999999998877
Q ss_pred ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC-
Q 012699 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP- 181 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~- 181 (458)
... + +-.++.. .-..|...|+|++|++++..+++|...|+|..-.++....
T Consensus 108 ~~p-~--------------~~~~~t~-------------~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~ 159 (726)
T KOG3621|consen 108 ELP-R--------------DLDYVTP-------------CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAF 159 (726)
T ss_pred cCC-C--------------cceeecc-------------ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhh
Confidence 331 1 1000000 0013889999999999999999999999999988876211
Q ss_pred -CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 182 -ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 182 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
...........+|..+... .+.+|++... .-.+.+.+.++
T Consensus 160 ~~~~q~il~~ds~IVQlD~~--q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 160 LSKSQEILSEDSEIVQLDYL--QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred ccccceeeccCcceEEeecc--cceehHhhhh--hhheeecchhH
Confidence 1112233345677777765 3334443332 23344554443
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.4e-05 Score=74.70 Aligned_cols=186 Identities=12% Similarity=0.114 Sum_probs=129.8
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..+.+++++ +..++.|+.+|.+++++....- .+...+. +. ...|.++++++.| |
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s---~~-----~~~Gey~asCS~D-------------G 93 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHS---SS-----ILEGEYVASCSDD-------------G 93 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccc---cc-----ccCCceEEEecCC-------------C
Confidence 345666665 6789999999999999876442 1111111 11 5678899999988 5
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccC-----CCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-----GKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILF 343 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~ 343 (458)
.+.|..+-+.+....+.+. .++.+++++|+ .+.+++|+.-| +.++.-+- ...+ .+....++|.++.|
T Consensus 94 kv~I~sl~~~~~~~~~df~---rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W 168 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYDFK---RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKW 168 (846)
T ss_pred cEEEeeccCCccceeEecC---CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEe
Confidence 9999998888877777543 56899999997 56899999888 77776432 1222 35566889999999
Q ss_pred cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 344 GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 344 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
. |+++|-++++| |++||+...+......... ...........+.|.++.+++ . +...+|+|..++
T Consensus 169 ~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~~LV-I-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 169 R--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDEDRLV-I-GWGDSVKICSIK 233 (846)
T ss_pred c--CcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCCeEE-E-ecCCeEEEEEEe
Confidence 6 77999888776 8999999876655433222 222233445668888776544 3 444568888776
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=0.00026 Score=59.29 Aligned_cols=205 Identities=12% Similarity=0.167 Sum_probs=114.0
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
...+..++|+|.++.++++....+.|..++.+ |+.+..+.... ......+++..++.++++...+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~------------- 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERD------------- 85 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTT-------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCC-------------
Confidence 34589999997778889999999999999974 77777766543 3567889998888766655444
Q ss_pred eeEEEEECCCCc------eeEEeec--C-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---Cceeee--------
Q 012699 271 ASLTVWNMKTWK------AMTVLPL--G-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITG-------- 330 (458)
Q Consensus 271 g~i~i~d~~~~~------~~~~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~-------- 330 (458)
+.+.++++.... ....+.+ . .+...+-.++|+|.++.|+++-...-..+|.+.. ...+..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccc
Confidence 488888773311 1122332 2 2345689999999888888877766666666543 111111
Q ss_pred eeCCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCc-ccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699 331 WPAHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-FCDPESSKSCRHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 408 (458)
.......+.+++++|. +.+++.+..+..+..+|.. ++ +........ .......-...-.++|.++|++. +.++-+
T Consensus 166 ~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpN 242 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPN 242 (248)
T ss_dssp HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred ccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC-EEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCc
Confidence 1123346788999995 4566666778888888844 33 322222111 11111122346779999999554 455666
Q ss_pred cEEEE
Q 012699 409 RAPIY 413 (458)
Q Consensus 409 ~i~i~ 413 (458)
..+++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 66654
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.52 E-value=7.8e-05 Score=62.39 Aligned_cols=204 Identities=10% Similarity=0.149 Sum_probs=113.9
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
..+..++|.|+...+++..... +.|..++. +++.+..+.+.+. .....+++..++.++++--.++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~------------~~i~els~-~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP------------GEIYELSL-DGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT------------TEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTE
T ss_pred CCccccEEcCCCCeEEEEECCC------------CEEEEEcC-CCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCc
Confidence 4599999999877666665554 58888887 4788888887663 56889999888877776656899
Q ss_pred EEEEeCCCCc------eeeeee-----CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC--CCeeEEeecCCcccCCC
Q 012699 317 IHMFDMSAGL------QITGWP-----AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN--QGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 317 i~v~d~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~ 383 (458)
+.++++.... ....+. .++..+-.++|+|.++.|+.+-...-..+|.+.. .................
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccc
Confidence 9999984321 111221 3455689999999887777776666677777764 11111111111111122
Q ss_pred CCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcc-cccCC--C-----CCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 384 SSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASG-MRTLP--H-----GAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~-~~~~~--h-----~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.....+.+++++|.. ++++....+..+..+|..+...- ..+.. | -...-.|+|.++|++.+ .++-...++
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~ 246 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYR 246 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEE
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEE
Confidence 334457889999964 55566666778888886554211 11111 1 13578899999997554 445555555
Q ss_pred E
Q 012699 455 M 455 (458)
Q Consensus 455 w 455 (458)
|
T Consensus 247 f 247 (248)
T PF06977_consen 247 F 247 (248)
T ss_dssp E
T ss_pred e
Confidence 4
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=1.1e-05 Score=73.12 Aligned_cols=92 Identities=14% Similarity=0.230 Sum_probs=69.5
Q ss_pred eEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699 272 SLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS 349 (458)
Q Consensus 272 ~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (458)
.-.+|+....+.. ....+ ..+..+.+.+++|+...|+.|+.||.|.+||...+... +....-..+.++|+|+|..
T Consensus 237 d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcE
Confidence 3455665544332 22222 34467999999999999999999999999998765332 2234456789999999999
Q ss_pred EEEecCCCeEEEEeccC
Q 012699 350 IFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~ 366 (458)
+++|+..|.+.+||+.-
T Consensus 314 ~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCceEEEEEeec
Confidence 99999999999999874
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.47 E-value=0.00033 Score=61.63 Aligned_cols=288 Identities=13% Similarity=0.108 Sum_probs=128.6
Q ss_pred EEEeCCCCCEEEEEe-CCCc--EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 152 CCRFSSSGNNIASAS-VDGT--VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.=+|.+||+.|+.++ .||. +.+.|+.+++..+ .+...+.......++|. ++.++-......|+-.|+++.+...
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--LTdg~g~~~~g~~~s~~-~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--LTDGPGDNTFGGFLSPD-DRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TT-SSEEEEEETTTEEEEEETTT--EEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--CccCCCCCccceEEecC-CCeEEEEECCCeEEEEECCcCcEEE
Confidence 346778887665544 4555 5555676665442 12211222223455644 4555444455688999999988766
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCC---------cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---------SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
.+..+......-....+.++..++.....+.... ....+...+.|.-.|+++++....+. ....+..+
T Consensus 117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH~ 193 (386)
T PF14583_consen 117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGHV 193 (386)
T ss_dssp EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEEE
T ss_pred EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccCc
Confidence 6655553222222333455665544332221110 01122233678888999988877765 33568899
Q ss_pred EEccCC-CEEEEEec---CC-eEEEEeCCC-CceeeeeeCCC--CCeEEEEEcCCCCEEEEe-----cCCCeEEEEeccC
Q 012699 300 CFNHNG-KILAASAV---DG-MIHMFDMSA-GLQITGWPAHD--SAISSILFGPDETSIFSL-----GSDGKIIEWSLQN 366 (458)
Q Consensus 300 ~~~~~~-~~l~~~~~---dg-~i~v~d~~~-~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~ 366 (458)
.|+|.. .+|+.|.+ +. .-+||-+++ +...+.+..+. ..+..=-|.|||+.|.-- +.+..|.-+|..+
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t 273 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT 273 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCC
Confidence 999954 45555443 11 124555433 33333333222 234445688999876542 2244577778877
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc----------------cEEEEEccCCCcc--c------
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV----------------RAPIYQVRGHASG--M------ 422 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~----------------~i~i~~~~~~~~~--~------ 422 (458)
.+..... .. ..-..+..++||++++-=+.|. -|++++++..... .
T Consensus 274 ~~~~~~~-~~----------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw 342 (386)
T PF14583_consen 274 GERRRLM-EM----------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSW 342 (386)
T ss_dssp --EEEEE-EE-----------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-----
T ss_pred CCceEEE-eC----------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcc
Confidence 6443211 10 0134566788998876433331 4566777654321 0
Q ss_pred ccC-CCCC-cEEEEEECCCCCeEE-EecCCCcEEEEe
Q 012699 423 RTL-PHGA-AITTVDWHPTLPMFL-TGSADHSVQVMS 456 (458)
Q Consensus 423 ~~~-~h~~-~v~~~~~~~~~~~l~-s~~~dg~v~iw~ 456 (458)
... ++.. .=-.+.|+||+++++ ++...|...||=
T Consensus 343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 011 1111 124579999999554 666778776663
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.46 E-value=1.3e-05 Score=73.09 Aligned_cols=185 Identities=17% Similarity=0.187 Sum_probs=114.8
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCC
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDG 315 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 315 (458)
..+....|+|++..++......... ..+.++|+.+++........++ -...+|+|||++|+... .||
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~---------~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGC---------PRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCC---------ceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCC
Confidence 4577788999999877664432110 2799999999888887765544 35578999998876544 455
Q ss_pred --eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCe--EEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699 316 --MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH 390 (458)
Q Consensus 316 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (458)
.|+++|+..+. +..+....+.-..=.|+|||++++..++ .|. |.+++.........+. ....-.
T Consensus 261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----------~~~~~~ 329 (425)
T COG0823 261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF----------SGGGNS 329 (425)
T ss_pred CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec----------cCCCCc
Confidence 57788887766 3334433444446789999998876655 555 5555555433211111 111112
Q ss_pred EEEEccCCCEEEEEeCC-cc--EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 391 EMALDVNGRRLLVTSGS-VR--APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 391 ~~~~s~~g~~l~~~~~~-~~--i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
.-.|||||++|+..+.. |. |.+.++.+... .+...+.......+|.|+++.+..
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 56799999999987753 43 66666655543 333334444445566677665443
No 339
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00017 Score=68.13 Aligned_cols=257 Identities=11% Similarity=0.140 Sum_probs=140.6
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCC---Cce-EEEEEecCCCeEEEEEc---------CCCcEEEEEcCCCce
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCG---TEI-MSLEWECKSDRLLLIGT---------ADGGIKAWNVDAKRV 226 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~~l~~~~---------~dg~i~~wd~~~~~~ 226 (458)
..++.++.++.|.-+|.++++........... ..+ ....+. + .+++.++ .+|.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 56777888899999999888765432221110 001 111222 2 3444443 467899999999998
Q ss_pred eeeccCCCCCC------------------ce-eeeeecCCCCeEEEeecccCCCC-----cceeeccceeEEEEECCCCc
Q 012699 227 VCDLNTTDAFP------------------SV-LDLKCSPVEPIFVSAAASRRYGS-----SNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 227 ~~~~~~~~~~~------------------~v-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~i~i~d~~~~~ 282 (458)
+.......... .+ ...++.+.+..++.+..+..... ........+.+.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 87765532100 01 12344444555555554321000 00001112479999999999
Q ss_pred eeEEeecCCCCC----cEEEEEEc----cCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 283 AMTVLPLGEDPP----AITSLCFN----HNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 283 ~~~~~~~~~~~~----~i~~~~~~----~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
....++...+.. ......+. -++. .+++++.+|.++.+|.++|+.+...... ...++.+| ..++
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vy 342 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVY 342 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEE
Confidence 998876543311 00011111 1333 6788889999999999999988765421 11233444 2333
Q ss_pred Ee------------------cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 352 SL------------------GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 352 ~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
.+ ..+|.+.-.|+.+++ .+|...................-.....+..|++++.+|.++.+
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~al 421 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAF 421 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEE
Confidence 32 236788888888764 44443322100000000011000112256788899999999999
Q ss_pred EccCCCcccccC
Q 012699 414 QVRGHASGMRTL 425 (458)
Q Consensus 414 ~~~~~~~~~~~~ 425 (458)
|..+++.+.+..
T Consensus 422 d~~tG~~lW~~~ 433 (488)
T cd00216 422 DATTGKELWKFR 433 (488)
T ss_pred ECCCCceeeEEE
Confidence 999998776654
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.41 E-value=4.6e-05 Score=69.79 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=119.4
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
.+.+....-....+.++|+|++++.++ ||...|+.....+ ....+.-....|. .++ .+++-..++.|.++
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r-------~k~~G~g~~~vw~-~~n-~yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWR-------NKAFGSGLSFVWS-SRN-RYAVLESSSTIKIY 94 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTE-------EEEEEE-SEEEE--TSS-EEEEE-TTS-EEEE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCc-------ccccCceeEEEEe-cCc-cEEEEECCCeEEEE
Confidence 344444556688999999999988854 7788888722211 1122444678898 444 46666668889996
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
.--.......+... ..+..+.. |..+...+.+ .|.+||..+++.+..+... +|..+
T Consensus 95 kn~~~~~~k~i~~~---~~~~~If~---G~LL~~~~~~--------------~i~~yDw~~~~~i~~i~v~----~vk~V 150 (443)
T PF04053_consen 95 KNFKNEVVKSIKLP---FSVEKIFG---GNLLGVKSSD--------------FICFYDWETGKLIRRIDVS----AVKYV 150 (443)
T ss_dssp ETTEE-TT-----S---S-EEEEE----SSSEEEEETT--------------EEEEE-TTT--EEEEESS-----E-EEE
T ss_pred EcCccccceEEcCC---cccceEEc---CcEEEEECCC--------------CEEEEEhhHcceeeEEecC----CCcEE
Confidence 32222222233322 12333433 7777776654 8999999999999988643 38999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCC-----------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAG-----------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
.|++++.+++..+.+ .+++++.... .....+..-...|.+.+|..+ .++-.+.. .++. +.++.
T Consensus 151 ~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge 224 (443)
T PF04053_consen 151 IWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE 224 (443)
T ss_dssp EE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE
T ss_pred EEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC
Confidence 999999999988755 6788775432 023333332567888899766 44333333 6666 33332
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
..... ....++.-+.+.|..+.++....++.+..+.++
T Consensus 225 ~~~i~----------~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 225 TGIIA----------HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE----------E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred cceEE----------EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 22111 112345667777877788888888888777665
No 341
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.41 E-value=0.00015 Score=65.48 Aligned_cols=223 Identities=14% Similarity=0.147 Sum_probs=113.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccccc------CCCceEEEEEec----CCC---e
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIY------CGTEIMSLEWEC----KSD---R 205 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~----~~~---~ 205 (458)
+...++...++|++++.|.-| ++|.|.++|.+.|.|++....+....... ....+.++.|.. .++ -
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 555566678999999998555 99999999999999998776554322222 234577888762 222 4
Q ss_pred EEEEEcCCCcEEEEEcC--C-Cceeeecc-C-CCCCCceeeee-ecCCCCeEEEeec-------ccCCCCcceeecccee
Q 012699 206 LLLIGTADGGIKAWNVD--A-KRVVCDLN-T-TDAFPSVLDLK-CSPVEPIFVSAAA-------SRRYGSSNIYSWGFAS 272 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~--~-~~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~ 272 (458)
.+++|+..|.+.+|.+. . +.....+. . ..+..++..+. ++.+...-+.+.. .+..-...+.......
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 78899999999999874 1 21111111 0 01123343333 2222111111110 0001112233333458
Q ss_pred EEEEECCCCceeEEeecCCCCCcEEEEEEc-----cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC----CCeEEEEE
Q 012699 273 LTVWNMKTWKAMTVLPLGEDPPAITSLCFN-----HNGKILAASAVDGMIHMFDMSAGLQITGWPAHD----SAISSILF 343 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~----~~v~~~~~ 343 (458)
++++...+.+...... ........+.+- ..+..|++-..+|.+++|.+..-+.+..++-+. ..+....+
T Consensus 237 irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssi 314 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSI 314 (395)
T ss_dssp EEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE
T ss_pred eEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEE
Confidence 9999998877665443 222223334442 356678888899999999999888887766532 23445667
Q ss_pred cCCCCEEEEecCCCeEEEEecc
Q 012699 344 GPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 344 ~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
+++|+.++-.+.. .+.++.+-
T Consensus 315 s~~Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 315 SRNGDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp -TTS-EEEE-SSS-EEEEEEEE
T ss_pred CCCCCEEEEeCcc-cEEEEEEE
Confidence 8888877665543 44444443
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.0012 Score=60.22 Aligned_cols=239 Identities=12% Similarity=0.188 Sum_probs=151.2
Q ss_pred EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 195 MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
..+...+...+..++-.....+...+.............. .....++.++.+..+.....+. +.+.
T Consensus 34 ~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~--~~p~~i~v~~~~~~vyv~~~~~------------~~v~ 99 (381)
T COG3391 34 GGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGG--VYPAGVAVNPAGNKVYVTTGDS------------NTVS 99 (381)
T ss_pred ceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCC--ccccceeeCCCCCeEEEecCCC------------CeEE
Confidence 4455553333444443333345554444222222111111 2345678888888555554432 4999
Q ss_pred EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
+.|..+.+......... ....++++|+++.+.++.. ++.+.+.|..+.+.......-..+ ..++++|+|..++
T Consensus 100 vid~~~~~~~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vy 175 (381)
T COG3391 100 VIDTATNTVLGSIPVGL---GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVY 175 (381)
T ss_pred EEcCcccceeeEeeecc---CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEE
Confidence 99988877777765433 4578999999988877766 689999999988888876554445 8999999999666
Q ss_pred Eec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCC
Q 012699 352 SLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPH 427 (458)
Q Consensus 352 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h 427 (458)
... .++.+.+.|........ ...............+.++|+|+++.+.... +.+...|..+.........-
T Consensus 176 v~~~~~~~v~vi~~~~~~v~~-----~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 176 VTNSDDNTVSVIDTSGNSVVR-----GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEecCCCeEEEEeCCCcceec-----cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc
Confidence 554 68999999976542221 0111122334456779999999988877665 48888888876544332211
Q ss_pred CC-cEEEEEECCCCCeEEEecC-CCcEEEEe
Q 012699 428 GA-AITTVDWHPTLPMFLTGSA-DHSVQVMS 456 (458)
Q Consensus 428 ~~-~v~~~~~~~~~~~l~s~~~-dg~v~iw~ 456 (458)
.. ....+..+|+|..+.+... .+.|.+-|
T Consensus 251 ~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid 281 (381)
T COG3391 251 GSGAPRGVAVDPAGKAAYVANSQGGTVSVID 281 (381)
T ss_pred ccCCCCceeECCCCCEEEEEecCCCeEEEEe
Confidence 11 5667899999997776633 35555543
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.36 E-value=0.00056 Score=61.86 Aligned_cols=228 Identities=15% Similarity=0.147 Sum_probs=112.5
Q ss_pred EEEEeCCCCCEEEEEeCC-CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 151 SCCRFSSSGNNIASASVD-GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
..+-||||+++||....| ..|+.+.+........ ....+..+.+-.++... . .-.+.++|+.+++....
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTEL 173 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEe
Confidence 468999999999887543 4455444322111000 01123344432122111 1 11467788888775321
Q ss_pred ccC---CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC--CCCCcEEEEEEc-c
Q 012699 230 LNT---TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG--EDPPAITSLCFN-H 303 (458)
Q Consensus 230 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~-~ 303 (458)
-.. ......+..+.|.+++..++..-.++.... -.+.++|..++......... .--.......+. +
T Consensus 174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~--------~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR--------LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE--------EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred eeccccCCCccCcccceecCCCcEEEEEEcccCCCE--------EEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 111 122356889999999995555544432221 26777788776655444211 111112244554 5
Q ss_pred CCC-EEEEEecCC--eEEEEeCCCCceeeeeeCCCCCeEE-EEEcCCCCEEE-EecCC--CeEEEEeccCC--CeeEEee
Q 012699 304 NGK-ILAASAVDG--MIHMFDMSAGLQITGWPAHDSAISS-ILFGPDETSIF-SLGSD--GKIIEWSLQNQ--GQVLWTR 374 (458)
Q Consensus 304 ~~~-~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~-~~~~d--g~i~iwd~~~~--~~~~~~~ 374 (458)
++. ++.....+| .|++++...+. ...+....-.|.. +.++++++.|+ ++..+ ..-.+|.+.-. +.+. ..
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~L 323 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CL 323 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ES
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-ec
Confidence 554 444555666 56666766555 3455555566754 67788776554 44442 23444444332 2221 11
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
.+.. ... ..+.|||+|++++....
T Consensus 324 T~~~-----~~~---~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 324 TCED-----GDH---YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp STTS-----STT---EEEEE-TTSSEEEEEEE
T ss_pred cCCC-----CCc---eEEEECCCCCEEEEEEc
Confidence 1111 111 68999999999876543
No 344
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.00031 Score=61.08 Aligned_cols=229 Identities=14% Similarity=0.156 Sum_probs=132.7
Q ss_pred EEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 198 EWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 198 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
.|.+..+.++.+--..+.|.-|+..+++... +..+ ..+.++..-..+..++++.. .+.+++
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p---~~~~~~~~~d~~g~Lv~~~~---------------g~~~~~ 91 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSP---GGFSSGALIDAGGRLIACEH---------------GVRLLD 91 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECC---CCcccceeecCCCeEEEEcc---------------ccEEEe
Confidence 3554555567777778889999988665432 2222 22333333334444444432 566777
Q ss_pred CCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEec-----------CCeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699 278 MKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAV-----------DGMIHMFDMSAGLQITGWPAHDSAISSILF 343 (458)
Q Consensus 278 ~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 343 (458)
.+++.....+.. .......+.....|+|.+-+.... -|.++.+|. .+..++.+..+-..-+.|+|
T Consensus 92 ~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~ 170 (307)
T COG3386 92 PDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAF 170 (307)
T ss_pred ccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEE
Confidence 665555222211 112245677888999876654333 144555554 45666666665666788999
Q ss_pred cCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCcc
Q 012699 344 GPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASG 421 (458)
Q Consensus 344 ~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~ 421 (458)
|||++.|+.+.. .+.|.-|++....-..... .............-.++...+|.+.+.+...| .|..|+.+ ++.+
T Consensus 171 SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~--~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~ 247 (307)
T COG3386 171 SPDGKTLYVADTPANRIHRYDLDPATGPIGGR--RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL 247 (307)
T ss_pred CCCCCEEEEEeCCCCeEEEEecCcccCccCCc--ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE
Confidence 999988777655 5788888876311110000 01111112445566788889999886555554 89999998 4455
Q ss_pred cccCCCCCcEEEEEEC-CCCC-eEEEecCC
Q 012699 422 MRTLPHGAAITTVDWH-PTLP-MFLTGSAD 449 (458)
Q Consensus 422 ~~~~~h~~~v~~~~~~-~~~~-~l~s~~~d 449 (458)
....-+...+++++|- |+.+ +++|+...
T Consensus 248 ~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 248 GEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 4444444678888884 4445 44444333
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.30 E-value=0.00024 Score=65.16 Aligned_cols=228 Identities=14% Similarity=0.133 Sum_probs=111.0
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..+..+.++ |+++.++. +.+|.-.+|.....+.... +......|.+.+. +++-... .
T Consensus 33 ~~p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~~~n~-yAv~~~~-------------~ 89 (443)
T PF04053_consen 33 IYPQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWSSRNR-YAVLESS-------------S 89 (443)
T ss_dssp S--SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE-TSSE-EEEE-TT-------------S
T ss_pred cCCeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEecCcc-EEEEECC-------------C
Confidence 346788999 67776666 5678888887443333221 3456788888555 4444433 3
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
.|.++.--+.+....++.+. .+..+-. |.+|+..+. +.|.+||..+++.++++... +|..+.|++++++++
T Consensus 90 ~I~I~kn~~~~~~k~i~~~~---~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~va 160 (443)
T PF04053_consen 90 TIKIYKNFKNEVVKSIKLPF---SVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVA 160 (443)
T ss_dssp -EEEEETTEE-TT-----SS----EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEE
T ss_pred eEEEEEcCccccceEEcCCc---ccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEE
Confidence 88886332323333343221 2344433 777777654 48999999999999988743 489999999999999
Q ss_pred EecCCCeEEEEeccCCCeeEEe--ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699 352 SLGSDGKIIEWSLQNQGQVLWT--RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA 429 (458)
Q Consensus 352 ~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~ 429 (458)
..+.+ .+.+++.......... .....+.........|.+.+|..+ .++..+.. .++.+ +.+....... -..
T Consensus 161 l~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl-~~Ge~~~i~~--ld~ 233 (443)
T PF04053_consen 161 LVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL-VNGETGIIAH--LDK 233 (443)
T ss_dssp EE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE-ETTEEEEEEE---SS
T ss_pred EEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE-EcCCcceEEE--cCC
Confidence 88766 6777765432000000 000000000011334677777766 44444444 55552 2221111111 134
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++.=+...|..+.+.....|+.|..+.++
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 56666777877788888899998888764
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=1.6e-06 Score=81.70 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEeccCC
Q 012699 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQNQ 367 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~ 367 (458)
..+....+|++|+-+.++|++|+..|.|++|++.+|........|..+|+.+.-+.+|..+++.+.-. -..+|++...
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 35667899999999999999999999999999999999999999999999999999999877766533 4789998864
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMF 443 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l 443 (458)
...... -..-.++.|+...+.-+.|+......+||+.++..+..++ +....-+...|+|+..++
T Consensus 1178 ~~~~Hs------------f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1178 GGPRHS------------FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred cCcccc------------ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 332211 1123557788776666777777889999999987776644 233344778899998866
Q ss_pred E
Q 012699 444 L 444 (458)
Q Consensus 444 ~ 444 (458)
.
T Consensus 1246 l 1246 (1516)
T KOG1832|consen 1246 L 1246 (1516)
T ss_pred e
Confidence 5
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0027 Score=57.98 Aligned_cols=245 Identities=12% Similarity=0.157 Sum_probs=157.0
Q ss_pred CeEEEEeCCCCCEEEEEe-CCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 149 PISCCRFSSSGNNIASAS-VDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
....+...|++..+.... ....+..-+.. .... ......+ .....++.++...+..+....+..|.+.|..+.+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~--~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTV--TQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-ccee--eeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 344567777775443332 22234444333 1111 1111111 33456677755555666666678999999888887
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
........ ....++++++++.+..+.... .++.+.+.|..+.+.......... + ..++++|+|.
T Consensus 109 ~~~~~vG~---~P~~~~~~~~~~~vYV~n~~~----------~~~~vsvid~~t~~~~~~~~vG~~--P-~~~a~~p~g~ 172 (381)
T COG3391 109 LGSIPVGL---GPVGLAVDPDGKYVYVANAGN----------GNNTVSVIDAATNKVTATIPVGNT--P-TGVAVDPDGN 172 (381)
T ss_pred eeEeeecc---CCceEEECCCCCEEEEEeccc----------CCceEEEEeCCCCeEEEEEecCCC--c-ceEEECCCCC
Confidence 77666553 567899999998777766531 115999999999888888543332 2 8899999999
Q ss_pred EEEEEe-cCCeEEEEeCCCCceee-----eeeCCCCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCC
Q 012699 307 ILAASA-VDGMIHMFDMSAGLQIT-----GWPAHDSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 307 ~l~~~~-~dg~i~v~d~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~ 377 (458)
.+++.. .++.|.+.|........ .... ......+.++|+|..++..-.. +.+...|..+.........
T Consensus 173 ~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~-- 249 (381)
T COG3391 173 KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP-- 249 (381)
T ss_pred eEEEEecCCCeEEEEeCCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc--
Confidence 776655 68899999976654442 1222 2344678999999976655443 5888888887543322111
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCCcc
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHASG 421 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~~~ 421 (458)
.... ....+..+|+|+.+.+.... +.+.+.|..+....
T Consensus 250 -----~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 250 -----VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred -----cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 1112 45668999999999988554 78888888775433
No 348
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=98.28 E-value=0.00057 Score=60.68 Aligned_cols=245 Identities=16% Similarity=0.204 Sum_probs=112.5
Q ss_pred CCCEEEEEe-CCCcEEEEecCCCCCCCcccc-cc-----------CCCceEEEEEecCCCeEEEEEcC------CCcEEE
Q 012699 158 SGNNIASAS-VDGTVRIWTYDSSTPASRNAT-IY-----------CGTEIMSLEWECKSDRLLLIGTA------DGGIKA 218 (458)
Q Consensus 158 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~-~~-----------~~~~v~~~~~~~~~~~~l~~~~~------dg~i~~ 218 (458)
+.++|+..+ ..+.|.|.|+.+.....+... +. ..+.+.|+ +++++++++-. -|-+.+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl----p~G~imIS~lGd~~G~g~Ggf~l 161 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL----PDGRIMISALGDADGNGPGGFVL 161 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-----SS--EEEEEEEETTS-S--EEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec----CCccEEEEeccCCCCCCCCcEEE
Confidence 456676666 678899999875443222111 11 01122332 67777777522 256888
Q ss_pred EEcCCCceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCC----C---CcceeeccceeEEEEECCCCceeEEeecC
Q 012699 219 WNVDAKRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRY----G---SSNIYSWGFASLTVWNMKTWKAMTVLPLG 290 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~g~i~i~d~~~~~~~~~~~~~ 290 (458)
+|-++.+.......... ...-+++-+.|..+.+++....... + .......=..++.+||+.+.+.++++.+.
T Consensus 162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 88887777666555332 2346788899999988887643210 0 00000001159999999999999999887
Q ss_pred CCCCcEEEEEEccC--CCEEEEE-ecCCeEEEEeC-CCCce----eeeeeCC-----------------CCCeEEEEEcC
Q 012699 291 EDPPAITSLCFNHN--GKILAAS-AVDGMIHMFDM-SAGLQ----ITGWPAH-----------------DSAISSILFGP 345 (458)
Q Consensus 291 ~~~~~i~~~~~~~~--~~~l~~~-~~dg~i~v~d~-~~~~~----~~~~~~~-----------------~~~v~~~~~~~ 345 (458)
........+.|..+ ..+=++| ....+|..|-- ..++. +..+... ..-|+.|..|.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 55445667777654 3333333 23445555443 33321 2222110 24578999999
Q ss_pred CCCEEEEecC-CCeEEEEeccCCCeeEEeecCC----------cccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 346 DETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCS----------RFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 346 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
|.++|+.+.. +|.|+.||+.+...+....... .........+...-+..|.||+.|++.++
T Consensus 322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999886655 9999999999876655432210 11112233455678999999999988753
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.23 E-value=0.00048 Score=62.38 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=118.6
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
.|..+.|. ....-|+++...|.|.+|.....+.... ....+-....+.+-+ ..+ +.
T Consensus 3 ~v~~vs~a-~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~~~~~~------~~~-------------~~ 58 (395)
T PF08596_consen 3 SVTHVSFA-PETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYNFRRFS------LNN-------------SP 58 (395)
T ss_dssp -EEEEEEE-TTTTEEEEEETTS-EEEEEEEE----------------------S--------GGG-------------SS
T ss_pred eEEEEEec-CCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCccccccc------ccC-------------CC
Confidence 47888998 5566688899999999998765543220 000011111110000 000 01
Q ss_pred EEEEECCC---C----ceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--C------CCCC
Q 012699 273 LTVWNMKT---W----KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--A------HDSA 337 (458)
Q Consensus 273 i~i~d~~~---~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~------~~~~ 337 (458)
-.+-|+.. . ......-++...++|++++.|.-| ++++|..+|.+.|.|++....+..-. . ....
T Consensus 59 ~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~ 137 (395)
T PF08596_consen 59 GKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSY 137 (395)
T ss_dssp -SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----
T ss_pred cceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccC
Confidence 11111111 0 111222223446889999998555 99999999999999998877665422 1 2346
Q ss_pred eEEEEEcC-----CC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE-EccC-----------
Q 012699 338 ISSILFGP-----DE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA-LDVN----------- 397 (458)
Q Consensus 338 v~~~~~~~-----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~----------- 397 (458)
++++.|+. |+ -.+++|...|.+.+|.+.......+........ ..+...+..+. ++.+
T Consensus 138 vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~ 215 (395)
T PF08596_consen 138 VTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT--TNHDSPILSIIPINADTGESALATISA 215 (395)
T ss_dssp EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHH
T ss_pred eeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc--ccCCCceEEEEEEECCCCCcccCchhH
Confidence 88888863 33 468889999999999886321111111100100 12223333322 2111
Q ss_pred ---------CCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC-----CCCCeEEEecCCCcEEEEeCC
Q 012699 398 ---------GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH-----PTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 398 ---------g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~dg~v~iw~l~ 458 (458)
-+-+++...+..++++...+.+...+.....-....+++- ..+..|+.-..+|.|+++.|.
T Consensus 216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred hhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 1234555566779999988776655555333344455553 355688888899999999874
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.20 E-value=0.00036 Score=62.33 Aligned_cols=224 Identities=12% Similarity=0.107 Sum_probs=124.4
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceee---eeecCC----CCeEEEeecccCCCCcceeeccceeEEEEECCCC----ce
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLD---LKCSPV----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW----KA 283 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~----~~ 283 (458)
.|++.|..+.+.+..+..... ..+.+ +.+..+ ..+++.|..-..... .....|.|.++++... ..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~---~~~~~Gri~v~~i~~~~~~~~~ 78 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGED---PEPSSGRILVFEISESPENNFK 78 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTS---SS-S-EEEEEEEECSS-----E
T ss_pred EEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEeccccccc---ccccCcEEEEEEEEcccccceE
Confidence 577888777776665554433 23333 334432 456666654321110 0011289999999884 22
Q ss_pred eEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 284 MTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
+..+.....+++|++++-- ++ +|+++. ++.|.+|++...+ ....-. .....+.++... +++++.|.....+.+
T Consensus 79 l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 2222222345778888766 34 455543 5789999998777 332221 122355555554 569999988888888
Q ss_pred EeccCCCe-eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC------c-cccc---CCCCCc
Q 012699 362 WSLQNQGQ-VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA------S-GMRT---LPHGAA 430 (458)
Q Consensus 362 wd~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~------~-~~~~---~~h~~~ 430 (458)
+....... ..... .......+.++.+-++++.++++..+|.+.++...... . .... ......
T Consensus 154 ~~~~~~~~~l~~va-------~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~ 226 (321)
T PF03178_consen 154 LRYDEENNKLILVA-------RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI 226 (321)
T ss_dssp EEEETTTE-EEEEE-------EESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred EEEEccCCEEEEEE-------ecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence 86664332 22111 11235568888888777899999999999999886321 0 1111 123467
Q ss_pred EEEE---EECCC--CC------eEEEecCCCcEEE
Q 012699 431 ITTV---DWHPT--LP------MFLTGSADHSVQV 454 (458)
Q Consensus 431 v~~~---~~~~~--~~------~l~s~~~dg~v~i 454 (458)
|+++ ++.|. +. .++-++.+|.|.+
T Consensus 227 v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 227 VNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred cceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 8887 65562 22 3777888998873
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.18 E-value=0.00095 Score=57.68 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=140.8
Q ss_pred ceEEecccccccccc-----ceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC---------cccceee
Q 012699 48 SLLLSTNSSEACATT-----ATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG---------AGDIIQM 113 (458)
Q Consensus 48 ~~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~---------~~~~~~~ 113 (458)
.+.+.|...++..+. ..++.-+++++.+.++..- -..+.-|-....+.+||....... .......
T Consensus 18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~-~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~ 96 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETF-YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY 96 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEE-EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEE-EeccccccceeEEEEEecCcCcccceEecCCcchheeccc
Confidence 577888877777643 3466667777766554211 000111222455667776543211 1112222
Q ss_pred eccCCCCcCCCcceeccCCCeeee--------eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCC-CCCCC
Q 012699 114 FNDGLYTENGRDAQGEEDFPEVKV--------DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDS-STPAS 183 (458)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~-~~~~~ 183 (458)
.+...++.+|+++.....-+...+ +.+..+.- + -|.-.-|. .+.+.+-|.||.+.-..++. ++...
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~---P-GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT---P-GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG---T-SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC---C-CEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 234457888888776544443332 12222110 0 12222232 24577788899998888874 33321
Q ss_pred ccccccCC--Cce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCC--------CCCceeeeeecCCCCe
Q 012699 184 RNATIYCG--TEI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTD--------AFPSVLDLKCSPVEPI 250 (458)
Q Consensus 184 ~~~~~~~~--~~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~--------~~~~v~~~~~~~~~~~ 250 (458)
+.....+. .++ ..-++. ..+..++.-+.+|.|+--|+....... .+.... ..+.-.-+++++..+.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~-~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYS-RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEE-TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceE-CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 11111111 112 222333 344455667889999998887665321 111100 0112334677766655
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEE-ecCCeEEEEeCCCCcee
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAAS-AVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~-~~dg~i~v~d~~~~~~~ 328 (458)
+......+..+... ...-.|.++|+.+++.+..+.+.. ++.+++.+.+.+ +|++. ..++.+.+||..+++.+
T Consensus 252 lyvLMh~g~~gsHK---dpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 252 LYVLMHQGGEGSHK---DPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEEE--TT-TT---S-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred EEEEecCCCCCCcc---CCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 55443322211111 112478899999999999987642 477899998766 55444 45789999999999999
Q ss_pred eeeeC
Q 012699 329 TGWPA 333 (458)
Q Consensus 329 ~~~~~ 333 (458)
.++..
T Consensus 326 ~~~~~ 330 (342)
T PF06433_consen 326 RSIEQ 330 (342)
T ss_dssp EEE--
T ss_pred eehhc
Confidence 88764
No 352
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.0014 Score=60.00 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=113.0
Q ss_pred CceEEEEEecCCCeEEEEEc--CC-CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeec
Q 012699 192 TEIMSLEWECKSDRLLLIGT--AD-GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSW 268 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~--~d-g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
..+..-+|+|....+.+..- .. ..+.++++++++........ ..-...+|+|+|+.++......
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~---g~~~~P~fspDG~~l~f~~~rd---------- 259 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN---GNNGAPAFSPDGSKLAFSSSRD---------- 259 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC---CccCCccCCCCCCEEEEEECCC----------
Confidence 44555667733333222222 22 35899999988866655533 3445678999999888776543
Q ss_pred cceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-C--eEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699 269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-G--MIHMFDMSAGLQITGWPAHDSAISSILFGP 345 (458)
Q Consensus 269 ~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 345 (458)
+.-.|.++|+..+.... +. ...+.-..-.|+|+|++++..+.. | .|.+++++.+.. ..+....+.-..-.|+|
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt--~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp 335 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LT--NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP 335 (425)
T ss_pred CCccEEEEcCCCCccee-cc--cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC
Confidence 11378888888877444 32 222333477899999998876543 3 577777776544 44443333333778999
Q ss_pred CCCEEEEecC-CCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 346 DETSIFSLGS-DGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 346 ~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
||++|+..+. +|. |.+.|+.+....... ........-.+.|+|+.+...+..
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----------t~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRIL----------TSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEc----------cccccCCCCCcCCCCceEEEeccC
Confidence 9999887765 344 666666554421111 111222335677788777665543
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.13 E-value=0.0068 Score=55.80 Aligned_cols=198 Identities=16% Similarity=0.139 Sum_probs=97.5
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee-----eeee
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL-----DLKC 244 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-----~~~~ 244 (458)
.|+||+.... .+.... ...+.+.++.|+ . ...|+.-..||.+++||+.... ...+...-....|. ...+
T Consensus 62 ~I~iys~sG~-ll~~i~--w~~~~iv~~~wt-~-~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIP--WDSGRIVGMGWT-D-DEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC-EeEEEE--ECCCCEEEEEEC-C-CCeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence 4888876544 332211 223789999998 4 4456677799999999987443 11111111111222 2223
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEE-CCCCceeEEe-ecCC-------CCCcEEEEEEccCCCEEEEEecCC
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN-MKTWKAMTVL-PLGE-------DPPAITSLCFNHNGKILAASAVDG 315 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d-~~~~~~~~~~-~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg 315 (458)
..+|-.+++.. +.+.+.. .........+ .... .........++.+....+....++
T Consensus 136 ~~~GivvLt~~---------------~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~ 200 (410)
T PF04841_consen 136 YKNGIVVLTGN---------------NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE 200 (410)
T ss_pred CCCCEEEECCC---------------CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC
Confidence 33443333322 1333322 2211010110 0000 000000022344444445545555
Q ss_pred eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
.+.+.+-...+. +. ..+++..|+.||+++++|.-..+|.+.+.+..-.+..... ... ....+..+.|.
T Consensus 201 ~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~-~~~-------~~~~p~~~~WC 268 (410)
T PF04841_consen 201 TIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF-DTD-------SKSPPKQMAWC 268 (410)
T ss_pred EEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe-ecC-------cCCCCcEEEEE
Confidence 666444332211 22 2468999999999999999999999988876433222211 111 22345667776
Q ss_pred cCCCE
Q 012699 396 VNGRR 400 (458)
Q Consensus 396 ~~g~~ 400 (458)
-+...
T Consensus 269 G~dav 273 (410)
T PF04841_consen 269 GNDAV 273 (410)
T ss_pred CCCcE
Confidence 65443
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.00021 Score=63.80 Aligned_cols=174 Identities=14% Similarity=0.196 Sum_probs=110.7
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEE---ccC----CCEEEEEec---------C-CeEEEEeCCCC----ceee
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCF---NHN----GKILAASAV---------D-GMIHMFDMSAG----LQIT 329 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~---~~~----~~~l~~~~~---------d-g~i~v~d~~~~----~~~~ 329 (458)
..|++.|..+.+.+..+.+... ..+.+++. ..+ ..+|++|+. . |.|.+|++... ..+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3899999999998888877654 34555443 322 468888764 2 89999999874 1222
Q ss_pred ee--eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 330 GW--PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 330 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
.+ ....++|++++-- +++ |+.+. .+.|.+|++...+....... ........+....+.++++|...
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~---------~~~~~~i~sl~~~~~~I~vgD~~ 148 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF---------YDSPFYITSLSVFKNYILVGDAM 148 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE---------E-BSSSEEEEEEETTEEEEEESS
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe---------ecceEEEEEEeccccEEEEEEcc
Confidence 11 2347889998865 444 44333 47899999998762222111 11112334444456799999988
Q ss_pred ccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 408 VRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 408 ~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..+.++..+......... .....++++.|-++++.++.+..+|.+.++..
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 888888665432211122 23456899999877778999999999999875
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.0094 Score=56.77 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=95.8
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCC--CceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceeeec
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~ 230 (458)
..++.++.|+.+.-.|..+++........... ..+.+ -.. .++. ++.+. .+|.|..+|.++|+.+..+
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v--~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV--VKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE--ECCE-EEEeecccccCCCcEEEEEECCCCceeEec
Confidence 35666777888888888888765432221111 11111 111 1333 44443 2689999999999988765
Q ss_pred cCCCCC-----------------------------Ccee-eeeecCCCCeEEEeecccC-------CCCcceeeccceeE
Q 012699 231 NTTDAF-----------------------------PSVL-DLKCSPVEPIFVSAAASRR-------YGSSNIYSWGFASL 273 (458)
Q Consensus 231 ~~~~~~-----------------------------~~v~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~i 273 (458)
...... ..+. .+++.|...++..+..+.. .+.... ...|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~----~~s~ 273 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY----TSSI 273 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc----ceeE
Confidence 543211 0111 2466666666665553311 011111 1378
Q ss_pred EEEECCCCceeEEeecCCCCC-------cEEEEEEccCCC---EEEEEecCCeEEEEeCCCCcee
Q 012699 274 TVWNMKTWKAMTVLPLGEDPP-------AITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~ 328 (458)
.-.|+++++....++...|.. ...-+.+..+|+ .++.+..+|.+++.|.++++++
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 888999999998887655421 122233334665 7789999999999999999876
No 356
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.07 E-value=4.1e-05 Score=70.68 Aligned_cols=114 Identities=11% Similarity=0.141 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 336 SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 336 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
..|.--+++..+++++.|+.-|.+++|+-..+..... ........+.....|++..++|+|+..|.|.++-+
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc--------cccCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 3444445666788999999999999999876543221 12224455677889999999999999999999998
Q ss_pred cCCCcccccC------CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 416 RGHASGMRTL------PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 416 ~~~~~~~~~~------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....+..... .|...|++++|++++..|++|...|+|..-.|
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence 7754332222 37889999999999999999999999877554
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=0.0034 Score=52.09 Aligned_cols=280 Identities=13% Similarity=0.085 Sum_probs=148.1
Q ss_pred CeEEEEe-CCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc-EEEEEcCCCc
Q 012699 149 PISCCRF-SSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG-IKAWNVDAKR 225 (458)
Q Consensus 149 ~v~~~~~-~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~ 225 (458)
++..-+| .+||++ +++.+.+|.+.- .+ .....-..++|+|....-++.+-.-|+ ..++|....+
T Consensus 36 avfasaf~~~dgs~g~a~~~eaGk~v~-~~------------~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~ 102 (366)
T COG3490 36 AVFASAFDARDGSFGAATLSEAGKIVF-AT------------ALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQ 102 (366)
T ss_pred chheeeeeccCCceeEEEEccCCceee-ee------------ecccccCCeecCCCCcceEEEEecCCceEEEECCCCCc
Confidence 3444444 457766 455666666532 11 112223456677666666666666554 4578888777
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
...++........--.-.|+|+|.+|.....|-. .+.|.|-+||.+. ...+.-.+..|.-....+.+.+||
T Consensus 103 ~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd--------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 103 EPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD--------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred CcEEEecccCceeecccccCCCCcEEEeecCCCC--------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCC
Confidence 6665554432222223568999999988876632 2337999999984 333333334454456778999999
Q ss_pred CEEEEEec------------------CCeEEEEeCCCCceeeee--e--CCCCCeEEEEEcCCCCEEEEecCCCe----E
Q 012699 306 KILAASAV------------------DGMIHMFDMSAGLQITGW--P--AHDSAISSILFGPDETSIFSLGSDGK----I 359 (458)
Q Consensus 306 ~~l~~~~~------------------dg~i~v~d~~~~~~~~~~--~--~~~~~v~~~~~~~~~~~l~~~~~dg~----i 359 (458)
+.++.+.. .-++.+.|..+++.+.+. + .+.-.|+.++..+||..++.+-..|- -
T Consensus 174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~p 253 (366)
T COG3490 174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLP 253 (366)
T ss_pred cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCC
Confidence 99887632 012333444444443322 2 23456888888888876655433221 0
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 438 (458)
-+--.......+....... .........+-+++.+.+..+++..+- .+...+||..++..+....- ..+..++ +
T Consensus 254 pLvg~~~~g~~l~~~~~pe-e~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva--~ 328 (366)
T COG3490 254 PLVGHFRKGEPLEFLDLPE-EQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVA--A 328 (366)
T ss_pred cceeeccCCCcCcccCCCH-HHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccce--e
Confidence 0000111111110000000 000112356777888877667666665 46788999998854322110 0111122 2
Q ss_pred CCCeEEEecCCCcEEEE
Q 012699 439 TLPMFLTGSADHSVQVM 455 (458)
Q Consensus 439 ~~~~l~s~~~dg~v~iw 455 (458)
...-++..+.+|.+..+
T Consensus 329 ~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 329 AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred ccCceEEecCCceEEec
Confidence 23335555556666644
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0033 Score=57.77 Aligned_cols=173 Identities=12% Similarity=0.147 Sum_probs=93.7
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEc
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFG 344 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~ 344 (458)
.|.+|+... +.+..+.... +.+.++.|+.+..+ ++-..||.+++||+. |+. +.........+....+.
T Consensus 62 ~I~iys~sG-~ll~~i~w~~--~~iv~~~wt~~e~L-vvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSG-KLLSSIPWDS--GRIVGMGWTDDEEL-VVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCC-CEeEEEEECC--CCEEEEEECCCCeE-EEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccC
Confidence 478887654 5566666655 67999999987654 455789999999986 333 11111112223333444
Q ss_pred CCCCEEEEecCCCeEEEEeccCCCeeEEee---cCCcccCC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTR---NCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
.+|-.++ ..++.+.+. .+........ ..+..... ...........++.+....+....++.+++.+-.....
T Consensus 137 ~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~ 212 (410)
T PF04841_consen 137 KNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ 212 (410)
T ss_pred CCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence 4563333 334444333 3322221100 11111110 00111111134555666655556666666554433211
Q ss_pred ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....+++..++.||++++||.-..+|.+.|.+-
T Consensus 213 ----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 213 ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred ----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 223468999999999999998888999887753
No 359
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.02 E-value=0.00069 Score=65.89 Aligned_cols=153 Identities=13% Similarity=0.145 Sum_probs=97.7
Q ss_pred CCCeEEEEE-cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 202 KSDRLLLIG-TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 202 ~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
.+..+|+.. .....|+-.|++.|+.+.....+.. .+|..++ |+.+.--.. ....+.+.++..+..||++-
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~-~~v~~~~--p~~K~aqlt------~e~tflGls~n~lfriDpR~ 561 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD-IPVVDIA--PDSKFAQLT------NEQTFLGLSDNSLFRIDPRL 561 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCC-cceeEec--ccccccccC------CCceEEEECCCceEEeccCC
Confidence 344444443 3457899999999999999888764 2344443 322110000 00111222224999999986
Q ss_pred Cc--eeE-EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699 281 WK--AMT-VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 281 ~~--~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 357 (458)
.. .+. ...........+|++-+.+| +||+|+.+|.|++||--..+....+++-..+|..|..+.||+++++.+ +.
T Consensus 562 ~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~t 639 (794)
T PF08553_consen 562 SGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KT 639 (794)
T ss_pred CCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cc
Confidence 43 221 11111233467888888777 899999999999999543344455667789999999999999987655 45
Q ss_pred eEEEEecc
Q 012699 358 KIIEWSLQ 365 (458)
Q Consensus 358 ~i~iwd~~ 365 (458)
.+.+++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 77777753
No 360
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.00 E-value=0.019 Score=56.14 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=146.6
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
.|.-..|-.|..+|.++..||.+.-+-++ ++.............++.--.|+....+.++ +..|.-..+|.-+..-+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vf-a~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVF-ALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEE-EeCCCCEEEEecCCcEE
Confidence 35555666678899999999998766554 3333222222233455555567634444444 44555555665433222
Q ss_pred eeeccCCCCCCceeeee-ecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEE
Q 012699 227 VCDLNTTDAFPSVLDLK-CSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCF 301 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~ 301 (458)
...+... .+..++ |+. -...++++.. +.+++.-+..-+.+ +++.... ....+++
T Consensus 664 ~spls~k----ev~~~c~f~s~a~~d~l~~~~~--------------~~l~i~tid~iqkl~irtvpl~~---~prrI~~ 722 (1096)
T KOG1897|consen 664 YSPLSLK----EVNHMCPFNSDAYPDSLASANG--------------GALTIGTIDEIQKLHIRTVPLGE---SPRRICY 722 (1096)
T ss_pred EeccchH----HhhhhcccccccCCceEEEecC--------------CceEEEEecchhhcceeeecCCC---ChhheEe
Confidence 2222211 111111 111 1223444443 36666655543332 2233333 3566777
Q ss_pred ccCCCEEEEEecC--------------CeEEEEeCCCCceeeeeeCC----CCCeEEEEEcCC-CCEEEEecC-------
Q 012699 302 NHNGKILAASAVD--------------GMIHMFDMSAGLQITGWPAH----DSAISSILFGPD-ETSIFSLGS------- 355 (458)
Q Consensus 302 ~~~~~~l~~~~~d--------------g~i~v~d~~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~~~~~------- 355 (458)
.+....+++.+.. ..++++|-++-+.+...+.. .-.+.++.|..| +.++++|..
T Consensus 723 q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ 802 (1096)
T KOG1897|consen 723 QESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDEN 802 (1096)
T ss_pred cccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCC
Confidence 7644444443321 24677776665544332211 124555668776 667777652
Q ss_pred ---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE
Q 012699 356 ---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 356 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
.|.|.++.+...+.+..... ....+.+.++.. -+|++||. -+..|++|+....+.+.....|..++.
T Consensus 803 ep~~GRIivfe~~e~~~L~~v~e-------~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~ 872 (1096)
T KOG1897|consen 803 EPVNGRIIVFEFEELNSLELVAE-------TVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIECNISNPII 872 (1096)
T ss_pred CcccceEEEEEEecCCceeeeee-------eeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhhcccCCeE
Confidence 47788888776322211110 111222332221 26676654 445699999988866666667888899
Q ss_pred EEEECCCCCeEEEecCCCcEEE
Q 012699 433 TVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.+...-.|..++.|.-=+.+.+
T Consensus 873 aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 873 ALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred EEEEEecCcEEEEeeccceEEE
Confidence 9998888888888876665544
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.96 E-value=0.01 Score=51.73 Aligned_cols=223 Identities=12% Similarity=0.130 Sum_probs=120.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc------
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN------ 231 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------ 231 (458)
.++.|+.|..+| +.+++....... .......+|..+...|.-+.+++.+ |+.+.++++..-.......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~---~~i~~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP---TRILKLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc---eeEeecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 567899999988 889988322221 1222334488898884444444433 4999999987655443111
Q ss_pred ------CCCCCCceeeee---ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCCCCcEE
Q 012699 232 ------TTDAFPSVLDLK---CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGEDPPAIT 297 (458)
Q Consensus 232 ------~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~~~i~ 297 (458)
.......+...+ -......++.+.. ..|.+|..... +..+.+.+. ..+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k--------------k~i~i~~~~~~~~~f~~~~ke~~lp---~~~~ 142 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK--------------KKILIYEWNDPRNSFSKLLKEISLP---DPPS 142 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEEC--------------CEEEEEEEECCcccccceeEEEEcC---CCcE
Confidence 001112233333 1122223333333 27777776542 455666544 4578
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC------------CCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH------------DSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
.++|. ++.++.|..+ ...+.|+.++.....+... ..++..+.. +++.+|++. |..-.+.|..
T Consensus 143 ~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~ 216 (275)
T PF00780_consen 143 SIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN 216 (275)
T ss_pred EEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC
Confidence 89998 5578887755 4889999876554332211 123333444 345566543 3344444443
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
.. ... .....-...+..+++ ...+|++... +.|.||++.+++.+
T Consensus 217 G~-~~r--------~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 217 GE-PSR--------KSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred CC-cCc--------ccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 21 111 011112223455555 3457776655 44999999988543
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.95 E-value=0.0064 Score=54.26 Aligned_cols=237 Identities=11% Similarity=0.105 Sum_probs=112.6
Q ss_pred CCeEEEEEc-CCCcEEEEEcCCC----ceeeeccC-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 203 SDRLLLIGT-ADGGIKAWNVDAK----RVVCDLNT-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 203 ~~~~l~~~~-~dg~i~~wd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
..++|+..+ ..+.|.+.|+.+. +..+.+.. .........+.+.|+|..++++-.+.. +.+.|.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~-------G~g~Gg 158 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDAD-------GNGPGG 158 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETT-------S-S--E
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCC-------CCCCCc
Confidence 345566655 6789999998743 33333332 112234556778899999988766542 234478
Q ss_pred EEEEECCCCceeEEeecCCC-CCcEEEEEEccCCCEEEEEe--------------------cCCeEEEEeCCCCceeeee
Q 012699 273 LTVWNMKTWKAMTVLPLGED-PPAITSLCFNHNGKILAASA--------------------VDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--------------------~dg~i~v~d~~~~~~~~~~ 331 (458)
+.++|-++.+.......... ...-..+-+.|..+.+++.. ...++.+||+.+.+.++++
T Consensus 159 f~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 159 FVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp EEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred EEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 88999888777766654322 23456677888888888763 2358999999999999988
Q ss_pred eCCCC--CeEEEEEcC--CCCE-EEEecCCCeEEEEeccCCCe-----eEEeecCC-------c-ccCCCCCCCceeEEE
Q 012699 332 PAHDS--AISSILFGP--DETS-IFSLGSDGKIIEWSLQNQGQ-----VLWTRNCS-------R-FCDPESSKSCRHEMA 393 (458)
Q Consensus 332 ~~~~~--~v~~~~~~~--~~~~-l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-------~-~~~~~~~~~~v~~~~ 393 (458)
.-... ....+.|.. +..+ ++.+...++|..|--...+. ++...... . +........-++.+.
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 75433 345666644 4444 33333455555554422221 11110000 0 000111145578999
Q ss_pred EccCCCEEEEEeC-CccEEEEEccCCCcccccC----C---------------CCCcEEEEEECCCCCeEEEe
Q 012699 394 LDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL----P---------------HGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 394 ~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~----~---------------h~~~v~~~~~~~~~~~l~s~ 446 (458)
+|.|.++|++.+. .|.++.||+.....+...- + -.+...-+..|-||+.|...
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 9999999998886 7999999998754332111 1 12345778889999877654
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.94 E-value=0.021 Score=54.53 Aligned_cols=200 Identities=10% Similarity=-0.006 Sum_probs=116.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCC--Cce-------EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCG--TEI-------MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~v-------~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
+..|+.++.++.|.-.|..+++.+-........ ... ..+++. +..++.++.|+.+.-.|.++|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 346666777788888888887765432211100 000 112222 34677888899999999999999877
Q ss_pred ccCCCCCC--ceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-------------
Q 012699 230 LNTTDAFP--SVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------------- 293 (458)
Q Consensus 230 ~~~~~~~~--~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------------- 293 (458)
........ .+.+ ..+. ++ .++.+..... ...+|.|.-+|.++++.+..+......
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~-------~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KG-KVITGISGGE-------FGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred cccccccccccccCCcEEE-CC-EEEEeecccc-------cCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 65432110 1111 1111 23 3333322100 011268999999999888765432211
Q ss_pred -----------------CcEEEEEEccCCCEEEEEecC-----C-----------eEEEEeCCCCceeeeeeCCCCCeE-
Q 012699 294 -----------------PAITSLCFNHNGKILAASAVD-----G-----------MIHMFDMSAGLQITGWPAHDSAIS- 339 (458)
Q Consensus 294 -----------------~~i~~~~~~~~~~~l~~~~~d-----g-----------~i~v~d~~~~~~~~~~~~~~~~v~- 339 (458)
..=..+++.|+..+++.+..+ + .|.-.|+++|+..-.++.....+.
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD 296 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWD 296 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcc
Confidence 001134677776777776522 2 677888999998777764322221
Q ss_pred --------EEEEcCCCC---EEEEecCCCeEEEEeccCCCee
Q 012699 340 --------SILFGPDET---SIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 340 --------~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
-+....+|+ .++.+..+|.+.+.|..+++.+
T Consensus 297 ~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 297 YDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 122224665 7889999999999999987653
No 364
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.94 E-value=0.0034 Score=50.50 Aligned_cols=214 Identities=10% Similarity=0.110 Sum_probs=116.2
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCC--CeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVE--PIFVSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
..+.++.+--..|.|.-||..+++.... +... +..++.+--.+ +.++.+...+ =.|--||.
T Consensus 25 ~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p----~~ag~ilpv~~~~q~~~v~~G~k------------f~i~nwd~ 88 (310)
T KOG4499|consen 25 ERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP----PSAGFILPVEGGPQEFAVGCGSK------------FVIVNWDG 88 (310)
T ss_pred ecceEEEEEeccCceehhhhhhhheEEEEEecC----cceeEEEEecCCCceEEEeecce------------EEEEEccc
Confidence 4456666666778888899887654332 2221 12222222111 1222222221 14555763
Q ss_pred CC--CceeEE---eecCCCCCcEEEEEEccCCCEEEEEec-C---------CeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699 279 KT--WKAMTV---LPLGEDPPAITSLCFNHNGKILAASAV-D---------GMIHMFDMSAGLQITGWPAHDSAISSILF 343 (458)
Q Consensus 279 ~~--~~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 343 (458)
.. .....+ ........+.+.-..+|+|+++ .|.. | |.++.|-.. ..+..+...-.--+.++|
T Consensus 89 ~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 89 VSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAW 165 (310)
T ss_pred ccceeeeeeeccccCchHHhcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccc
Confidence 32 222222 1111223456677789999984 4432 2 334444332 112222222233467889
Q ss_pred cCCCCEEEE-ecCCCeEEEEe--ccCC-----CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 344 GPDETSIFS-LGSDGKIIEWS--LQNQ-----GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 344 ~~~~~~l~~-~~~dg~i~iwd--~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
+.+.+.++. -+.+-+|.-|| ..++ +.+...+....+.. ...-.++...+|++.++.-..++|...|.
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-----~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-----LEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-----CCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 887776554 45577787788 3332 22222222212111 12334566778999888888999999999
Q ss_pred cCCCcccccCCCCCcEEEEEECCC
Q 012699 416 RGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 416 ~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
.+++.+..+.-....|++++|--.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCC
Confidence 999887777666789999999543
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.91 E-value=4e-05 Score=43.44 Aligned_cols=37 Identities=46% Similarity=0.888 Sum_probs=33.5
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
....+..|...|.++.|.++++++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.89 E-value=0.022 Score=53.09 Aligned_cols=234 Identities=12% Similarity=0.140 Sum_probs=122.1
Q ss_pred EEEEEecCCCeEEEEE-cCCC----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699 195 MSLEWECKSDRLLLIG-TADG----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269 (458)
Q Consensus 195 ~~~~~~~~~~~~l~~~-~~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
....++ +++++++.+ +..| .++++|+++++.+...-.. .....+.|.+++..++....+...... ...-
T Consensus 127 ~~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~ 200 (414)
T PF02897_consen 127 GGFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGY 200 (414)
T ss_dssp EEEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS---CCGC
T ss_pred eeeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccc--cCCC
Confidence 356677 556655543 4444 5999999999876432111 112239999999988777665422200 1111
Q ss_pred ceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCC----ceeeeeeCCCCCeE
Q 012699 270 FASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAG----LQITGWPAHDSAIS 339 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~----~~~~~~~~~~~~v~ 339 (458)
...|+.|.+.+.... ..+...........+..++++++|+..... ..+++.|+..+ .....+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 247899999876554 333322222226788999999998765432 45888888764 22333333333343
Q ss_pred -EEEEcCCCCEEEEecC---CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-C--ccEEE
Q 012699 340 -SILFGPDETSIFSLGS---DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-S--VRAPI 412 (458)
Q Consensus 340 -~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~--~~i~i 412 (458)
.+... .+.+++.... .+.|...++.+.....+.. . ...+...+.-..+...+.+|+.... + ..|++
T Consensus 281 ~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~----~--l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v 353 (414)
T PF02897_consen 281 YYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWT----V--LIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV 353 (414)
T ss_dssp EEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEE----E--EE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred EEEEcc-CCEEEEeeCCCCCCcEEEEeccccccccccee----E--EcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence 34333 4434333322 4567777777654311110 0 0112222233344445555555443 3 36889
Q ss_pred EEcc-CCCcccccCCCCCcEEEEEECCCCC
Q 012699 413 YQVR-GHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 413 ~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
+++. +.........-.+.|..+...++++
T Consensus 354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred EECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 9998 4433333333445677777666666
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.88 E-value=0.00061 Score=66.23 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=93.1
Q ss_pred ecCCeEEEEeCCCCceeeeeeCCCCC-eEEEEEcC-----CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 312 AVDGMIHMFDMSAGLQITGWPAHDSA-ISSILFGP-----DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
.....|+-.|++.|+.+..+..|... |..++-.. +...-+.|-.++.+..||.+-.+..+....... -..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~----Y~~ 576 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ----YSS 576 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc----ccc
Confidence 34578999999999999999988754 55554221 123455677788899999986542211111111 123
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.....+++-+.+| +||+|+.+|.|++||--+......+.+-..+|.+|..+.||++|++.+.. .+.+.+
T Consensus 577 ~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~ 645 (794)
T PF08553_consen 577 KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLID 645 (794)
T ss_pred CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEE
Confidence 3446677766666 68899999999999965543333444667999999999999977766543 444443
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.88 E-value=0.0012 Score=63.18 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=89.9
Q ss_pred CcEEEEEEccCCCEEEEEe------cC--CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-CeEEEEec
Q 012699 294 PAITSLCFNHNGKILAASA------VD--GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-GKIIEWSL 364 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~------~d--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~ 364 (458)
..+...+++|+|+.++... .| ..|.+++.. +.. ..+.. ......-.|+|+|+.|++.+.. ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3578899999999887655 23 356666653 322 22222 2247889999999888877643 22333332
Q ss_pred cCCCeeEEee-cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE---EEccCCCccc----ccC-CCCCcEEEEE
Q 012699 365 QNQGQVLWTR-NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI---YQVRGHASGM----RTL-PHGAAITTVD 435 (458)
Q Consensus 365 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i---~~~~~~~~~~----~~~-~h~~~v~~~~ 435 (458)
....++.... ....... .....|..+.|||||+.++.... ++|++ -....+.... .+. +-...+.++.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 2222221110 0001110 23456999999999999988774 67777 3333332111 111 2334468899
Q ss_pred ECCCCCeEEEecCCCcEEEEeC
Q 012699 436 WHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 436 ~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|.+++.++ .+..++...+|.+
T Consensus 504 W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 504 WRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EecCCEEE-EEecCCCCceEEE
Confidence 99999854 5555555555654
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.018 Score=50.34 Aligned_cols=231 Identities=12% Similarity=0.080 Sum_probs=126.5
Q ss_pred EeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee---
Q 012699 154 RFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD--- 229 (458)
Q Consensus 154 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--- 229 (458)
.|.++.. ++.+--..+.|.-|+..++... .......+.++... ..+..|+++.. -+.+++.+++.....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----~~~~p~~~~~~~~~-d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR----VFPSPGGFSSGALI-DAGGRLIACEH--GVRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE----EEECCCCcccceee-cCCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence 4666666 4455556778888887755432 23334444555544 44445555433 366667665554222
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (458)
..........++..+.|+|.+.+...... ..........|.++.+|. .+.....+. .+-..-+.++||||++.|+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~--~~~~~~~~~~G~lyr~~p-~g~~~~l~~--~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYF--DLGKSEERPTGSLYRVDP-DGGVVRLLD--DDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCcc--ccCccccCCcceEEEEcC-CCCEEEeec--CcEEecCceEECCCCCEEE
Confidence 22222234577899999999888766510 000011112245555554 344444332 2233457899999998888
Q ss_pred EEecC-CeEEEEeCCC--C----c-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-eEEEEeccCCCeeEEeecCCccc
Q 012699 310 ASAVD-GMIHMFDMSA--G----L-QITGWPAHDSAISSILFGPDETSIFSLGSDG-KIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 310 ~~~~d-g~i~v~d~~~--~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
.+... +.|.-|++.. + + ....+....+..-.++...+|.+.+++-.+| .|..|+.. ++..... ..+
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP--- 253 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI-KLP--- 253 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-ECC---
Confidence 77654 7888887752 1 1 1122223345556677777887665444444 89999887 4333222 111
Q ss_pred CCCCCCCceeEEEEc-cCCCEEEEEeC
Q 012699 381 DPESSKSCRHEMALD-VNGRRLLVTSG 406 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s-~~g~~l~~~~~ 406 (458)
...+++++|- |+.+.|++.+.
T Consensus 254 -----~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 254 -----VKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -----CCCCccceEeCCCcCEEEEEec
Confidence 1234556663 45566655544
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.77 E-value=9.6e-05 Score=41.75 Aligned_cols=39 Identities=28% Similarity=0.542 Sum_probs=34.4
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
+++...+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.76 E-value=0.0078 Score=57.82 Aligned_cols=194 Identities=12% Similarity=0.031 Sum_probs=106.6
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC---
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD--- 314 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 314 (458)
.+.+.+++|++..++......... ......|.+++... .. ..+. .+. ......|+|+|+.+++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-----~d~~s~Lwv~~~gg-~~-~~lt-~g~--~~t~PsWspDG~~lw~v~dg~~~ 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-----PDPASSLWVGPLGG-VA-VQVL-EGH--SLTRPSWSLDADAVWVVVDGNTV 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-----CCcceEEEEEeCCC-cc-eeee-cCC--CCCCceECCCCCceEEEecCcce
Confidence 577899999999887765311000 00113666666532 23 3332 222 37888999998877766422
Q ss_pred ---------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE---EeccCCCeeEEeecCCcccCC
Q 012699 315 ---------GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE---WSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 315 ---------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~ 382 (458)
+.+.+.++..++... ...+.|..+.|||||..++... ++.|.+ -....+. ........+ .
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l--~ 492 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREV--G 492 (591)
T ss_pred EEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEe--e
Confidence 234444444433322 2356799999999999888765 467776 3322222 111010011 1
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCcc--EEEEEccCCCcccccCC--CCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSVR--APIYQVRGHASGMRTLP--HGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~--i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
......+..+.|.+++.++ ++..++. ++..++.+..... +.. ...++.+++=+++ .++....+|.+.
T Consensus 493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 1222335778999999965 5555444 4444455443221 122 3567888887763 355556666444
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.017 Score=47.48 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
....+++.|+..+.+.--|..+|.......... ++.+-+.- -+..++.+... |.+++.+.+++
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~---RiE~sa~v-vgdfVV~GCy~-------------g~lYfl~~~tG 83 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGV---RIECSAIV-VGDFVVLGCYS-------------GGLYFLCVKTG 83 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehhhCc---eeeeeeEE-ECCEEEEEEcc-------------CcEEEEEecch
Confidence 556788999999999999999999876544432 23322222 34556666655 69999999999
Q ss_pred ceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
.....+...+.- -......+++..+..|+.|++.+..|.++..++...+-..+...+-+..|....|+.+...|.+.-
T Consensus 84 s~~w~f~~~~~v--k~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vla 161 (354)
T KOG4649|consen 84 SQIWNFVILETV--KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLA 161 (354)
T ss_pred hheeeeeehhhh--ccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEE
Confidence 887777543321 123456778999999999999999999998888887655544445556663334444555555444
Q ss_pred Eec
Q 012699 362 WSL 364 (458)
Q Consensus 362 wd~ 364 (458)
-..
T Consensus 162 vt~ 164 (354)
T KOG4649|consen 162 VTK 164 (354)
T ss_pred Ecc
Confidence 333
No 373
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.74 E-value=0.027 Score=49.94 Aligned_cols=225 Identities=12% Similarity=0.139 Sum_probs=110.2
Q ss_pred EEecCCC-eEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 198 EWECKSD-RLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 198 ~~~~~~~-~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
+|. .++ ++|+.+..|| .+.+.|+.+++..+...... .......++|+.+.++.....+ .|+
T Consensus 42 ~ft-~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~~~~Yv~~~~-------------~l~ 105 (386)
T PF14583_consen 42 CFT-DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDRALYYVKNGR-------------SLR 105 (386)
T ss_dssp -B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETTT-------------EEE
T ss_pred CcC-CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCCeEEEEECCC-------------eEE
Confidence 456 445 4555555555 57777888888765544332 2233566778777766544332 899
Q ss_pred EEECCCCceeEEeecCCCCCcEEEEEE--ccCCCEEEEEec----------------------CCeEEEEeCCCCceeee
Q 012699 275 VWNMKTWKAMTVLPLGEDPPAITSLCF--NHNGKILAASAV----------------------DGMIHMFDMSAGLQITG 330 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~----------------------dg~i~v~d~~~~~~~~~ 330 (458)
-.|+++.+....+..+. ..+....| +.++..++-.-. ...|.-.|+.+|+....
T Consensus 106 ~vdL~T~e~~~vy~~p~--~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v 183 (386)
T PF14583_consen 106 RVDLDTLEERVVYEVPD--DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV 183 (386)
T ss_dssp EEETTT--EEEEEE--T--TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred EEECCcCcEEEEEECCc--ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence 99999988877776544 33433455 345655443211 13466667777765544
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEecCCC----e-EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 331 WPAHDSAISSILFGPDETSIFSLGSDG----K-IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg----~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
+. -...+..+.|+|....+++-+.+| . -|||-++..+...+... .......+..=-|.|||..|..-+
T Consensus 184 ~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~------~~~~~e~~gHEfw~~DG~~i~y~~ 256 (386)
T PF14583_consen 184 FE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH------RRMEGESVGHEFWVPDGSTIWYDS 256 (386)
T ss_dssp EE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---------TTEEEEEEEE-TTSS-EEEEE
T ss_pred Ee-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee------cCCCCcccccccccCCCCEEEEEe
Confidence 44 356778899999655555443332 1 36777766554433221 112234455667899998776533
Q ss_pred C-----CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 406 G-----SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 406 ~-----~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
. +..|.-+++.+.+... .........+.-++||++++-=|.|
T Consensus 257 ~~~~~~~~~i~~~d~~t~~~~~--~~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 257 YTPGGQDFWIAGYDPDTGERRR--LMEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EETTT--EEEEEE-TTT--EEE--EEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred ecCCCCceEEEeeCCCCCCceE--EEeCCceeeeEEcCCCCEEEecCCC
Confidence 2 2346666666654321 1222345566778999977753433
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.73 E-value=0.039 Score=51.39 Aligned_cols=247 Identities=11% Similarity=0.105 Sum_probs=126.5
Q ss_pred eEEEEeCCCCCEEEEE-eCCC----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----------C
Q 012699 150 ISCCRFSSSGNNIASA-SVDG----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----------G 214 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g 214 (458)
+...+++|+++++|.+ +..| ++++.|+.+++.+.. .+ .......+.|.+.+..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--cc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467889999998755 3333 599999998855421 11 111223389994444455554333 2
Q ss_pred cEEEEEcCCCcee--eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEe
Q 012699 215 GIKAWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVL 287 (458)
Q Consensus 215 ~i~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~ 287 (458)
.|+.|.+.+.... ..+...........+..++++++++........ ...+.+.|+... ......
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---------~s~v~~~d~~~~~~~~~~~~~l~ 273 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---------ESEVYLLDLDDGGSPDAKPKLLS 273 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---------EEEEEEEECCCTTTSS-SEEEEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---------CCeEEEEeccccCCCcCCcEEEe
Confidence 3778887766432 333333322225678899999988766554311 137888888874 222222
Q ss_pred ecCCCCCcEEEEEEccCCCEEEEEec---CCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEec-CCC--e
Q 012699 288 PLGEDPPAITSLCFNHNGKILAASAV---DGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLG-SDG--K 358 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~ 358 (458)
. .. ..+....-+..+.+++.... .+.|...++.+... ...+..+...+.-..+...+.+|+... .++ .
T Consensus 274 ~--~~-~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 274 P--RE-DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR 350 (414)
T ss_dssp E--SS-SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred C--CC-CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence 2 12 22333222234444443322 46787788877552 334555555333333334444555443 344 4
Q ss_pred EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699 359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA 419 (458)
Q Consensus 359 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~ 419 (458)
|+++++........... ...+.+..+...+++..+..... -.+++.||+.+++
T Consensus 351 l~v~~~~~~~~~~~~~~--------p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 351 LRVYDLDDGKESREIPL--------PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEETT-TEEEEEEES--------SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEECCCCcEEeeecC--------CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 88888872222221111 12233555666666665544332 2578888887764
No 375
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.70 E-value=0.028 Score=48.79 Aligned_cols=277 Identities=11% Similarity=0.112 Sum_probs=124.7
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccC----CCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYC----GTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
..++..|.|..+..-++.| ..++| +....+-..-....... .....++.|. . ...+++|. .+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~-~~g~ivG~-~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-G-NEGWIVGE-PG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEE-T-TEEEEEEE-TT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEec-C-CceEEEcC-Cc-eEEEecC
Confidence 4578899998555555655 45654 33333222111111111 1236677776 3 44555543 34 4444445
Q ss_pred CCceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCCCCcEEEEE
Q 012699 223 AKRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 223 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~ 300 (458)
.|+.-..+..... ......+....++...+.+.. | .+|...++. .-..+ .......+..+.
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~--------------G--~iy~T~DgG~tW~~~-~~~~~gs~~~~~ 151 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR--------------G--AIYRTTDGGKTWQAV-VSETSGSINDIT 151 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEEEEEETT------------------EEEESSTTSSEEEE-E-S----EEEEE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC--------------C--cEEEeCCCCCCeeEc-ccCCcceeEeEE
Confidence 5554433322111 122333333333333332221 2 234333322 22222 234446788899
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
-+++|++++++.......-||--...-...-+.-...|.+|.|.|++...+.+ ..|.|++=+..... ..+.. ...
T Consensus 152 r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~-~~w~~---~~~ 226 (302)
T PF14870_consen 152 RSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG-ETWSE---PII 226 (302)
T ss_dssp E-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE-EEE------B-
T ss_pred ECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc-ccccc---ccC
Confidence 99999999888655555677754322222223346789999999998765544 78888887722211 11111 111
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
........+..++|.+++...++|+.. .+ +...+.++.-.+.. .-...+..+.|.++.+-+| .+.+|.|.-|
T Consensus 227 ~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 227 PIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred CcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 122344558899999998887765544 33 33444443222221 3345788999977655454 5568887655
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.68 E-value=0.031 Score=48.74 Aligned_cols=228 Identities=18% Similarity=0.195 Sum_probs=125.1
Q ss_pred CCCeEEEEEcCCCcEEEEEcCC-CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDA-KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
..++.|+.|+.+| +.+++... ......... ..|..+...|+-+.++.-+. +.+.++++..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd--------------~~l~~~~L~~ 65 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSD--------------GQLYVYDLDS 65 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcC--------------CccEEEEchh
Confidence 3567899999998 99999832 222222222 34889999998887776654 3999999876
Q ss_pred CceeEEee------------cCCCCCcEEEEE--EccCCCEEEEEecCCeEEEEeCCCC-----ceeeeeeCCCCCeEEE
Q 012699 281 WKAMTVLP------------LGEDPPAITSLC--FNHNGKILAASAVDGMIHMFDMSAG-----LQITGWPAHDSAISSI 341 (458)
Q Consensus 281 ~~~~~~~~------------~~~~~~~i~~~~--~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~~ 341 (458)
........ .-.....+...+ -.+.+...++......|.+|..... +..+.+.- ...+..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i 144 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSI 144 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEE
Confidence 54443110 001122344444 1123333333444568888887653 34455543 4778899
Q ss_pred EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC-c--ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS-R--FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
+|. ++.++.+..+ ...+.|+.+........... . +........++..+..+ ++.+|++- +..-.+.+..+.
T Consensus 145 ~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~G~ 218 (275)
T PF00780_consen 145 AFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKNGE 218 (275)
T ss_pred EEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCCCC
Confidence 998 4567777654 47888998543321110000 0 00111112233333333 45666543 333444555544
Q ss_pred CcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 419 ASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 419 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
........-...+.++++. .++|+..+.+ .|.||++.
T Consensus 219 ~~r~~~i~W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~ 255 (275)
T PF00780_consen 219 PSRKSTIQWSSAPQSVAYS--SPYLIAFSSN-SIEVRSLE 255 (275)
T ss_pred cCcccEEEcCCchhEEEEE--CCEEEEECCC-EEEEEECc
Confidence 2221223344566777774 4577776665 59999873
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00024 Score=65.05 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=69.0
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
..+.-+.|+|.-.++|.+..+|.|.++.++ .+.+.+++.|...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 457889999999999999999999999988 788888887888887 99999999999999999999999999875443
No 378
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.66 E-value=0.025 Score=47.17 Aligned_cols=249 Identities=14% Similarity=0.084 Sum_probs=143.3
Q ss_pred EEEeCCCC-CEEEEEeCCCc-EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCC
Q 012699 152 CCRFSSSG-NNIASASVDGT-VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAK 224 (458)
Q Consensus 152 ~~~~~~~~-~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~ 224 (458)
.++|+|.. .-++.+-.-|+ ..++|..+.+...........+-.-.-.|+ +++.+|+..-.| |.|-+||.+.+
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccc
Confidence 47788854 34666666665 467888777655332222222222233577 788888876443 78999998844
Q ss_pred c-eeeeccCCCCCCceeeeeecCCCCeEEEeecccC----CCCc-ceeeccceeEEEEECCCCceeEEeecC--CCCCcE
Q 012699 225 R-VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR----YGSS-NIYSWGFASLTVWNMKTWKAMTVLPLG--EDPPAI 296 (458)
Q Consensus 225 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~g~i~i~d~~~~~~~~~~~~~--~~~~~i 296 (458)
- .+..+..+. -....+.+.+||..++.+...-. .++. +-.....-.+.+.|..++..+....+. .+.-.+
T Consensus 151 fqrvgE~~t~G--iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 151 FQRVGEFSTHG--IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cceecccccCC--cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 2 333344433 35677999999999887765211 1111 111122246777887888887776665 455678
Q ss_pred EEEEEccCCCEEEEEecCCe-----EEEEeCCCCceeeeeeC-------CCCCeEEEEEcCCCCEEEEecC-CCeEEEEe
Q 012699 297 TSLCFNHNGKILAASAVDGM-----IHMFDMSAGLQITGWPA-------HDSAISSILFGPDETSIFSLGS-DGKIIEWS 363 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 363 (458)
..++..+||...+.+-..|. -.+=-...++++.-+.. ....|-+++.+.+..+++..+- .+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 89999999876665543331 11111123444433322 1245677888765555555544 55688999
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
..++..+..... .-+.-.-+...-+++.+..|.+.++.-.
T Consensus 309 a~tG~vv~~a~l-------------~daaGva~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 309 AATGAVVSEAAL-------------PDAAGVAAAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred cCCCcEEecccc-------------cccccceeccCceEEecCCceEEecccc
Confidence 998754432110 1112233445556777888888877443
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.015 Score=48.79 Aligned_cols=166 Identities=12% Similarity=0.125 Sum_probs=109.7
Q ss_pred CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 291 EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
+....+.++.|+|+.+.|++......-.|+=...|+.+.+++-. -...-.|.+..++.+.++--.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 33455999999999998888776666666655668888887621 22345678888887777777799999998887655
Q ss_pred eEEeecC-CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CC-------CCcEEEEEECC
Q 012699 370 VLWTRNC-SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PH-------GAAITTVDWHP 438 (458)
Q Consensus 370 ~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h-------~~~v~~~~~~~ 438 (458)
....... ..+......+...-.++|+|..+.|.++-+.+-+.||.+.......... .+ -..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 5433321 1122222235667889999999999999988878888776443221111 12 23477788887
Q ss_pred CCC-eEEEecCCCcEEEEe
Q 012699 439 TLP-MFLTGSADHSVQVMS 456 (458)
Q Consensus 439 ~~~-~l~s~~~dg~v~iw~ 456 (458)
... +|+-+.+++.+.-.|
T Consensus 243 ~~~~LLVLS~ESr~l~Evd 261 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVD 261 (316)
T ss_pred CCCcEEEEecCCceEEEEe
Confidence 544 666666666665444
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.65 E-value=0.019 Score=55.13 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=105.5
Q ss_pred CCCEEEEEeCCC------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-C-----cEEEEEcCCCc
Q 012699 158 SGNNIASASVDG------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-G-----GIKAWNVDAKR 225 (458)
Q Consensus 158 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-----~i~~wd~~~~~ 225 (458)
.+.+++.|+.++ .+..+|..++..... ........-.+++.. ++.+.++|+.| | .+..||..+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 455667777663 577888877644321 112222223444443 56888899988 3 57788988887
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
....-.... .+...-...-+|.+.+.|+.++...- ..+..||..+.+....-.......... ...-+|
T Consensus 361 W~~~a~M~~--~R~~~~v~~l~g~iYavGG~dg~~~l--------~svE~YDp~~~~W~~va~m~~~r~~~g--v~~~~g 428 (571)
T KOG4441|consen 361 WTPVAPMNT--KRSDFGVAVLDGKLYAVGGFDGEKSL--------NSVECYDPVTNKWTPVAPMLTRRSGHG--VAVLGG 428 (571)
T ss_pred eeccCCccC--ccccceeEEECCEEEEEecccccccc--------ccEEEecCCCCcccccCCCCcceeeeE--EEEECC
Confidence 544222221 12222222335677777777742211 378999998765544332222111122 222367
Q ss_pred CEEEEEecCC------eEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCCe-----EEEEeccCC
Q 012699 306 KILAASAVDG------MIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDGK-----IIEWSLQNQ 367 (458)
Q Consensus 306 ~~l~~~~~dg------~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~ 367 (458)
+..++|+.++ ++..||..+.+... .+........ ++. -++...+.|+.|+. +..||..+.
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCC
Confidence 7778887554 57888887754422 2221111222 222 35677888887763 666777654
No 381
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.62 E-value=0.081 Score=51.98 Aligned_cols=288 Identities=12% Similarity=0.122 Sum_probs=156.3
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-EEEec-CCCeEEEEEcCCCcEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWEC-KSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
+.|+.--.|+..++.-+-+..|+-..+|.-+. +........ ..+.. ..|+. .-...++++. .+.+++..++.-
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls~---kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~i 703 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLSL---KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEI 703 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccch---HHhhhhcccccccCCceEEEec-CCceEEEEecch
Confidence 45666666766544433344455555664332 221111111 11111 12221 1233455544 346777666543
Q ss_pred ce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcc-eeeccceeEEEEECCCCceeEEeecCCCC--CcEEEE
Q 012699 225 RV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN-IYSWGFASLTVWNMKTWKAMTVLPLGEDP--PAITSL 299 (458)
Q Consensus 225 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--~~i~~~ 299 (458)
+. ++++..+ .....+++.+....+.+.+......... -....-..++++|.++.+.....++.... ..+.+.
T Consensus 704 qkl~irtvpl~---~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~ 780 (1096)
T KOG1897|consen 704 QKLHIRTVPLG---ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISC 780 (1096)
T ss_pred hhcceeeecCC---CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeee
Confidence 32 2333333 3567778877444444433221111100 00011147889999888877766654432 234455
Q ss_pred EEccC-CCEEEEEec----------CCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 300 CFNHN-GKILAASAV----------DGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 300 ~~~~~-~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
.|..| +.++++|+. .|.|.+|....+..+.....+ .+.+.++.. -+|+++|.- ...|++|++.+
T Consensus 781 ~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~ 857 (1096)
T KOG1897|consen 781 KFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTT 857 (1096)
T ss_pred eecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccc
Confidence 58777 778888863 478888887764444433222 344444433 267777644 56899999987
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeE
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMF 443 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l 443 (458)
.+... ....+..++..+...-.|..+++|.--+++.+...+..+...... -+....+++.+-.+.. +
T Consensus 858 ~~eLr---------~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-y 927 (1096)
T KOG1897|consen 858 ERELR---------IECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-Y 927 (1096)
T ss_pred cceeh---------hhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-E
Confidence 64332 122355668889999999999999988888877766554222222 3556677777765444 4
Q ss_pred EEecCCCcEEEE
Q 012699 444 LTGSADHSVQVM 455 (458)
Q Consensus 444 ~s~~~dg~v~iw 455 (458)
+.+..+|.+.+-
T Consensus 928 lgae~~gNlf~v 939 (1096)
T KOG1897|consen 928 LGAENSGNLFTV 939 (1096)
T ss_pred EeecccccEEEE
Confidence 455566766654
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00036 Score=63.96 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCce-eEEEEccCCCEEEEEeCCccEEEE
Q 012699 335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR-HEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
...+.-+.|+|.-..+|.+..+|.+.+..+. -+.+|.. ..++..+ .+++|.|||+.||+|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwti--------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTI--------PIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec--cceeEec--------cCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 3457789999999999999999999988887 2223322 1123334 499999999999999999999999
Q ss_pred EccCCCcccccC-CCCCcEEEEEECC
Q 012699 414 QVRGHASGMRTL-PHGAAITTVDWHP 438 (458)
Q Consensus 414 ~~~~~~~~~~~~-~h~~~v~~~~~~~ 438 (458)
|++.+..+.... .....|.++-|+|
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 999887665432 3456777777863
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.57 E-value=0.036 Score=46.53 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=114.3
Q ss_pred ceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 193 EIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
-...+.|. .++.++-+.+.-| .|+.+|+.+++.......... ---..++...+.-+.+ .+.+
T Consensus 46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qL--------------TWk~ 109 (264)
T PF05096_consen 46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQL--------------TWKE 109 (264)
T ss_dssp EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEE--------------ESSS
T ss_pred cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEE--------------EecC
Confidence 35677775 5677788877766 799999999988766555432 1223344433322222 2333
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcC
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGP 345 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~ 345 (458)
+...+||..+.+.+..+...+. -..++ .+++.|+.......++.+|..+.+...++.... ..++-+.|-
T Consensus 110 ~~~f~yd~~tl~~~~~~~y~~E---GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFPYPGE---GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp SEEEEEETTTTEEEEEEE-SSS-----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred CeEEEEccccceEEEEEecCCc---ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 6999999999999999987643 34455 456677776667789999988877766654322 245567774
Q ss_pred CCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc-------CCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 346 DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC-------DPESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 346 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
+|...|=.=....|...|..++....+.. ...+. .......-.+.+|+.|..+.|.+.+..
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iD-ls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWID-LSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE--HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEE-hhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 66555555556677778877765443321 11111 111224567889999988877776653
No 384
>PHA02713 hypothetical protein; Provisional
Probab=97.57 E-value=0.023 Score=54.71 Aligned_cols=224 Identities=8% Similarity=0.025 Sum_probs=108.0
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEcCCCceeeeccCCCCCCceeeee
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLK 243 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~ 243 (458)
.+..||..+.+..... .......-.+++. -++.+++.|+.+ ..+..||+.++.....-.... .......
T Consensus 273 ~v~~yd~~~~~W~~l~-~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVIS-TIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECC-CCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeE
Confidence 4667787665432111 1111111122333 356777777754 347788988776432221111 1111222
Q ss_pred ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--------
Q 012699 244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-------- 315 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------- 315 (458)
..-++...+.|+.+... ....+..||..+.+....-.+.........++ -+++..+.|+.++
T Consensus 348 ~~~~g~IYviGG~~~~~--------~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTN--------VERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred EEECCEEEEECCcCCCC--------CCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccc
Confidence 33456677777754211 01368999988755433222221111122222 2577777777542
Q ss_pred ---------------eEEEEeCCCCcee--eeeeCCCCCeEEEEEcCCCCEEEEecCCC------eEEEEeccC-CCeeE
Q 012699 316 ---------------MIHMFDMSAGLQI--TGWPAHDSAISSILFGPDETSIFSLGSDG------KIIEWSLQN-QGQVL 371 (458)
Q Consensus 316 ---------------~i~v~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~-~~~~~ 371 (458)
.+..||..+.+.. ..+.........++ -+++..+.|+.++ .+..||..+ .+
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--- 492 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--- 492 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence 4778888765432 22211111111222 3566666776542 356788775 22
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--cEEEEEccCCC
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--RAPIYQVRGHA 419 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--~i~i~~~~~~~ 419 (458)
|.... . ..........++ -+|+..++|+.++ .+..||..+.+
T Consensus 493 W~~~~-~---m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 493 WELIT-T---TESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEcc-c---cCcccccceeEE--ECCEEEEEeeecceeehhhcCccccc
Confidence 21111 1 111111112222 2778888888777 67777776654
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.04 Score=46.41 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=108.7
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
+.|-+..|.++.|+|+.+.|++......-.||=...++.+.... ...-+....+.+. .++++.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP-L~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP-LTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec-ccccCChhHeEEe-cCCEEEEEehhcceEEEEEEc
Confidence 44556669999999999999888877777777656666553322 2223445566776 778888887888899888877
Q ss_pred CCceeeecc-------CCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeecCCC-
Q 012699 223 AKRVVCDLN-------TTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPLGED- 292 (458)
Q Consensus 223 ~~~~~~~~~-------~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~~~~- 292 (458)
.+....... ...+ ...-..++|.|....++.+-+.+ -+.||...... .........+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-------------P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-------------PIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-------------CcEEEEEecCCcccccccccCcc
Confidence 654322222 1111 24567899999998888877664 55555444222 1110000000
Q ss_pred ------CCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 293 ------PPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 293 ------~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
-..+..+.|++ .+.+++.+.+++.+.-.|.. |.++..+
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 12467788887 46677777788888888865 4444443
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0011 Score=64.79 Aligned_cols=92 Identities=18% Similarity=0.366 Sum_probs=68.1
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE---cCCC
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILF---GPDE 347 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~---~~~~ 347 (458)
|.+...|+...-. +........++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+++-+ ..++
T Consensus 109 ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~n 187 (1206)
T KOG2079|consen 109 GHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQN 187 (1206)
T ss_pred hhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCC
Confidence 6787777765311 11222344578999999999999999999999999999999999988888777666554 3355
Q ss_pred CEEEEecCCCeEEEEecc
Q 012699 348 TSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 348 ~~l~~~~~dg~i~iwd~~ 365 (458)
..++++..-|. +|.+.
T Consensus 188 S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 188 SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cEEEEccCCCc--eEEEE
Confidence 56777777775 66654
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0022 Score=57.84 Aligned_cols=149 Identities=11% Similarity=0.145 Sum_probs=98.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--
Q 012699 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-- 283 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-- 283 (458)
++..+.....++-.|++.|+.+.....+.. |.-+.+.|+.+.--..+ ...+.+-.+..|.-||++-...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d---i~mv~~t~d~K~~Ql~~------e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD---INMVDITPDFKFAQLTS------EQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC---cceeeccCCcchhcccc------cccEEeecCCceEEecccccCcce
Confidence 444555667899999999999988887753 66667777654211111 1123344446899999874322
Q ss_pred eEEeec--CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 284 MTVLPL--GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 284 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
+...+. ........|.+-..+| ++++|+.+|.|++||--..+....+++-..+|..+..+.+|++|+..+ +..+.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL 496 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL 496 (644)
T ss_pred eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence 111111 1112345666666565 899999999999999744444556788899999999999999887544 557777
Q ss_pred Eecc
Q 012699 362 WSLQ 365 (458)
Q Consensus 362 wd~~ 365 (458)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 7764
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.50 E-value=0.032 Score=47.68 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=88.8
Q ss_pred cEEEEEEccCCCEEEEEe---cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe-ccCCCee
Q 012699 295 AITSLCFNHNGKILAASA---VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS-LQNQGQV 370 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~ 370 (458)
.+.+.+++++++.++... ....++++... ....... ....+..-.|++++...+....+...+++. ..+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 588999999999877655 33455665543 2222221 233788889999987776666666666664 2222111
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccCCCcc--ccc------C-CCCCcEEEEEECC
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRGHASG--MRT------L-PHGAAITTVDWHP 438 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~~~~~--~~~------~-~h~~~v~~~~~~~ 438 (458)
..... .......|..+.+||||..+|.... ++++++--+.....- ..+ . .....+++++|.+
T Consensus 102 ~~~v~------~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 102 PVEVD------WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eEEec------ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 11000 0111117999999999999988773 467777765422111 111 1 2346899999999
Q ss_pred CCCeEEEecCC
Q 012699 439 TLPMFLTGSAD 449 (458)
Q Consensus 439 ~~~~l~s~~~d 449 (458)
++.+++.+...
T Consensus 176 ~~~L~V~~~~~ 186 (253)
T PF10647_consen 176 DSTLVVLGRSA 186 (253)
T ss_pred CCEEEEEeCCC
Confidence 99877765543
No 389
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.47 E-value=0.017 Score=41.05 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=64.8
Q ss_pred EEEEEEcc---C-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 296 ITSLCFNH---N-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 296 i~~~~~~~---~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
|+++++.. + .+.|++|+.|..|++|+-. +.+..+.. .+.|.+++-... ..|+.+..+|+|-+|+-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---ee
Confidence 55666654 2 2589999999999999854 56666654 456777777666 4788889999999987643 22
Q ss_pred EeecCCcccCCCCCCCceeEEEEcc-C--C-CEEEEEeCCccEE
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDV-N--G-RRLLVTSGSVRAP 411 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~-~--g-~~l~~~~~~~~i~ 411 (458)
|..+ .+..+.++++.. + | .-|++|-.+|.|-
T Consensus 75 WRiK---------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIK---------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeec---------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2211 222244544433 3 3 3677888888764
No 390
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.0002 Score=57.16 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=86.0
Q ss_pred EEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK 386 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 386 (458)
+..-+.+|.|.-++++..+.... -..|... .. .-.-+..++.|+.+|.|.+|+....+.... .+.. ...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~--v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d-----~~~s--~~e 102 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QR--VVTASAKLMVGTSDGAVYVFNWNLEGAHSD-----RVCS--GEE 102 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc-ee--ecccCceEEeecccceEEEecCCccchHHH-----hhhc--ccc
Confidence 33446678888887765332111 1112211 11 112345789999999999999873322110 1000 111
Q ss_pred CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEe--cCCCcEEEEeCC
Q 012699 387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTG--SADHSVQVMSLS 458 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~~dg~v~iw~l~ 458 (458)
.....+.--.++.+..++..+|.|+.|++.-.+.+...-.|. .++..+..+..+++++.+ |.|..++.|++.
T Consensus 103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 112223333466688999999999999998776655555676 667777777777778877 888888888863
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0049 Score=55.68 Aligned_cols=136 Identities=20% Similarity=0.191 Sum_probs=92.7
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE-------EEEecCCCeEEEEeccCCCe-eEEeecCCc
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS-------IFSLGSDGKIIEWSLQNQGQ-VLWTRNCSR 378 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~ 378 (458)
.|..+.....++-.|++.|+.+..+..+.. |+-+.+.|+.+. =+.|-.|..|.-||.+-... .+.....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555667799999999999999998777 777888885431 23455688899999985443 111111111
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
+ .......+.+-..+ -++++|+.+|.|++||--.......+.+-..+|..+..+.+|++|+..+.
T Consensus 427 y----~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 427 Y----STKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred c----ccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 1 11222344444444 47899999999999998655555566678899999999999997765553
No 392
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.39 E-value=0.062 Score=45.12 Aligned_cols=192 Identities=14% Similarity=0.118 Sum_probs=111.9
Q ss_pred CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699 234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313 (458)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (458)
+...-...+.+..++.++.+.+..+. ..|+.+|+.+++......++.. .--..++...+ +.....-.
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~-----------S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d-~l~qLTWk 108 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQ-----------SSLRKVDLETGKVLQSVPLPPR-YFGEGITILGD-KLYQLTWK 108 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTE-----------EEEEEEETTTSSEEEEEE-TTT---EEEEEEETT-EEEEEESS
T ss_pred CCcccCccEEecCCCEEEEeCCCCCc-----------EEEEEEECCCCcEEEEEECCcc-ccceeEEEECC-EEEEEEec
Confidence 33345677888777888777776532 5999999999998888776543 23344555533 34444567
Q ss_pred CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
++...+||..+.+.+.++.- .+.=+.++ .+++.|+.+.....+.++|..+.+........ .....-..++.+.
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~----~~g~pv~~LNELE 181 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT----DNGRPVSNLNELE 181 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E----ETTEE---EEEEE
T ss_pred CCeEEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE----ECCEECCCcEeEE
Confidence 89999999999888888764 34556777 45667777777778999998876554322111 0111122345555
Q ss_pred EccCCCEEEEEeCCccEEEEEccCCCccccc---------------CCCCCcEEEEEECCCCC-eEEEe
Q 012699 394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRT---------------LPHGAAITTVDWHPTLP-MFLTG 446 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~---------------~~h~~~v~~~~~~~~~~-~l~s~ 446 (458)
+- +|...|=.-....|...|..++.....+ .+-.+-.+.+||.|..+ +++||
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 54 5555544444555666666655332111 01246789999998877 45554
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.36 E-value=0.1 Score=46.73 Aligned_cols=253 Identities=13% Similarity=0.128 Sum_probs=124.5
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc-----cccccCCCceEEEEEecC---CCeEEEEEcCC-------
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR-----NATIYCGTEIMSLEWECK---SDRLLLIGTAD------- 213 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-----~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d------- 213 (458)
.-+.|+|.|||+++++ ...|.|++++. .+..... ............++++|. ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987765 55999999983 3322111 111223456889999962 23333333321
Q ss_pred -CcEEEEEcCCC-------cee-eeccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-
Q 012699 214 -GGIKAWNVDAK-------RVV-CDLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK- 282 (458)
Q Consensus 214 -g~i~~wd~~~~-------~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~- 282 (458)
..|.-|....+ +.+ ..+.. .........+.|.|++.+.++.+.........-.....|.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444544433 111 11111 11123456799999998777766554311111111122455555543210
Q ss_pred -----------eeEEeecCCCCCcEEEEEEccC-CCEEEEE-ecCCeEEEEeCCCC------------------------
Q 012699 283 -----------AMTVLPLGEDPPAITSLCFNHN-GKILAAS-AVDGMIHMFDMSAG------------------------ 325 (458)
Q Consensus 283 -----------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-~~dg~i~v~d~~~~------------------------ 325 (458)
....+. .++ .....++|+|. |.++++= +.++.=.|.-+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A-~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYA-YGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEEE-E---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEEE-eCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 011111 122 23568999998 6544432 11221222212111
Q ss_pred -----ceeeeeeCCCCCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 326 -----LQITGWPAHDSAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 326 -----~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
.++..+..| ..+..+.|.+ .+.+|++.-..+.|....+............. ......+..++
T Consensus 239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~ 312 (331)
T PF07995_consen 239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVA 312 (331)
T ss_dssp -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEE
T ss_pred CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEE
Confidence 122333333 4566677653 45566666667788888887554433222111 23344689999
Q ss_pred EccCCCEEEEEeCCccEE
Q 012699 394 LDVNGRRLLVTSGSVRAP 411 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~~i~ 411 (458)
+.|||.++++...+|.|+
T Consensus 313 ~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 313 QGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EETTSEEEEEE-TTTTEE
T ss_pred EcCCCeEEEEECCCCeEe
Confidence 999999998888888764
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.32 E-value=0.01 Score=42.15 Aligned_cols=100 Identities=10% Similarity=0.045 Sum_probs=63.2
Q ss_pred eEEEEEcC---CC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 338 ISSILFGP---DE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 338 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
|++|++.. +| +.|++|+.|..|++|+-... .... .....+..++-... ..++.+..+|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--~~Ei----------~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--VAEI----------TETDKVTSLCSLGG-GRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--EEEE----------ecccceEEEEEcCC-CEEEEEecCCEEEEE
Confidence 56676654 33 57999999999999986532 1111 23344677766666 568889999999888
Q ss_pred EccCCCcccccCCCCCcEEEEEEC-CCC--C-eEEEecCCCcEE
Q 012699 414 QVRGHASGMRTLPHGAAITTVDWH-PTL--P-MFLTGSADHSVQ 453 (458)
Q Consensus 414 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~--~-~l~s~~~dg~v~ 453 (458)
+-.. ...+.. .+..++++++. .++ . -|++|=.+|.|-
T Consensus 69 ~~~~--RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DRSQ--RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eCcc--eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 7633 223333 22336666543 333 2 688888888774
No 395
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.29 E-value=0.069 Score=51.46 Aligned_cols=226 Identities=14% Similarity=0.152 Sum_probs=116.8
Q ss_pred CCCeEEEEEcCCC------cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE
Q 012699 202 KSDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV 275 (458)
Q Consensus 202 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i 275 (458)
..+.+++.|+.++ .+..||..++........... ..-.+++. -++...++|+.+. +...+ ..+..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~-~~~~lYv~GG~~~--~~~~l-----~~ve~ 353 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAV-LNGKLYVVGGYDS--GSDRL-----SSVER 353 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEE-ECCEEEEEccccC--CCccc-----ceEEE
Confidence 3466777777763 678899888865544333322 12223333 3456777777762 11111 38899
Q ss_pred EECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCC
Q 012699 276 WNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITG--WPAHDSAISSILFGPDET 348 (458)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 348 (458)
||....+....-.+........... -+|...++|+.|| ++..||..+.+.-.. +.........+. -+|.
T Consensus 354 YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~ 429 (571)
T KOG4441|consen 354 YDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGK 429 (571)
T ss_pred ecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCE
Confidence 9998877544333222221122122 2677888999886 478888876543222 211111222222 2677
Q ss_pred EEEEecCCC------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccC
Q 012699 349 SIFSLGSDG------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRG 417 (458)
Q Consensus 349 ~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~ 417 (458)
..++|+.++ .+..||..+..- .... ... ....... .-.-++.+.++|+.++ ++..||..+
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~W---~~~~-~M~---~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNTW---TLIA-PMN---TRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCce---eecC-Ccc---cccccce--EEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 778887654 366777765421 1111 110 1111111 2334677778887765 367788776
Q ss_pred CCccccc-CC-CCCcEEEEEECCCCCeEEEecCCCc
Q 012699 418 HASGMRT-LP-HGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 418 ~~~~~~~-~~-h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
.+-...- .. ....+-... -+++..+.|+.||.
T Consensus 501 ~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGN 534 (571)
T ss_pred CceeEcccCccccccccEEE--ECCEEEEEecccCc
Confidence 5422111 11 112222222 24667788888864
No 396
>PHA02713 hypothetical protein; Provisional
Probab=97.11 E-value=0.038 Score=53.27 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=100.2
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----cEEEEEcCCCce
Q 012699 158 SGNNIASASVD------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----GIKAWNVDAKRV 226 (458)
Q Consensus 158 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~ 226 (458)
++..++.||.+ ..+..||..+........ ......-.+++. -++.+.+.|+.++ .+..||..+++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~-m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP-MIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC-CcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 55666777653 346778876654321111 111111112222 3577778888764 478899988765
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC---cc---e----eeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---SN---I----YSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~---~----~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
...-......... ....-++...+.|+.+..... .. + .......+..||+.+.+....-.+.......
T Consensus 380 ~~~~~mp~~r~~~--~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~ 457 (557)
T PHA02713 380 KMLPDMPIALSSY--GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP 457 (557)
T ss_pred EECCCCCcccccc--cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC
Confidence 4322222111111 112235677777765421100 00 0 0000247889998876544332221111111
Q ss_pred EEEEEccCCCEEEEEecC------CeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEecc
Q 012699 297 TSLCFNHNGKILAASAVD------GMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQ 365 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~d------g~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~ 365 (458)
+++ .-+++..+.|+.+ ..+..||..+ .+. +..++........+++ +++..++|+.|+ .+..||..
T Consensus 458 -~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 458 -GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred -cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 122 2246666777654 2467899886 333 3333333333333333 677888998888 56667766
Q ss_pred CC
Q 012699 366 NQ 367 (458)
Q Consensus 366 ~~ 367 (458)
+.
T Consensus 534 ~~ 535 (557)
T PHA02713 534 TY 535 (557)
T ss_pred cc
Confidence 54
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.10 E-value=0.0018 Score=38.18 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=28.3
Q ss_pred CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 428 GAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 428 ~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
...|..++|+|...+||.+..||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3579999999999999999999999999874
No 398
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.03 Score=55.34 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=73.1
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
...++.|+..|.+...|+...-. ..........+|.+++|+.+|..++.|-.+ |.|.+||+.+++.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~-------------G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGD-------------GHVTVWDMHRAKI 164 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCC-------------CcEEEEEccCCcc
Confidence 45688888889998888765421 112222334789999999999999988877 6999999999999
Q ss_pred eEEeecCCCCC-cEEEEEEccCCCEEEEEecCCeEEEEeC
Q 012699 284 MTVLPLGEDPP-AITSLCFNHNGKILAASAVDGMIHMFDM 322 (458)
Q Consensus 284 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~v~d~ 322 (458)
.+.+...+++. .+..+.+..++..++++...|. +|.+
T Consensus 165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99887555432 2333444455667888777775 5554
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.97 E-value=0.2 Score=42.87 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=91.9
Q ss_pred ceeeeeecCCCCeEEEee--cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699 238 SVLDLKCSPVEPIFVSAA--ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 315 (458)
.+.+.++++++..++... .+. ..+.++... ....... .+ ..+....|++++...++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~------------~~L~~~~~~--~~~~~~~-~g--~~l~~PS~d~~g~~W~v~~~~~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGG------------RSLYVGPAG--GPVRPVL-TG--GSLTRPSWDPDGWVWTVDDGSG 87 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCC------------CEEEEEcCC--Ccceeec-cC--CccccccccCCCCEEEEEcCCC
Confidence 578899999999887766 322 255555443 3222221 12 2578889999987777766666
Q ss_pred eEEEEe-CCCCcee-eeeeCC--CCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 316 MIHMFD-MSAGLQI-TGWPAH--DSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 316 ~i~v~d-~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
..+++. ..++... ...... ...|..+.+||||..++... .++.|.+=-+.....-..................
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~ 167 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSD 167 (253)
T ss_pred ceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCc
Confidence 666663 2333221 111211 22899999999999877655 3577777765532221000011111111233567
Q ss_pred eeEEEEccCCCEEEEEeCCc
Q 012699 389 RHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~ 408 (458)
+..++|.+++.+++.+...+
T Consensus 168 v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceeeeecCCCEEEEEeCCCC
Confidence 88999999999888776654
No 400
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.19 Score=42.49 Aligned_cols=277 Identities=9% Similarity=0.039 Sum_probs=149.3
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV- 226 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~- 226 (458)
+-+..+.++.+ +...+..+.-++|.|+.+.............+--.++.. .+++...+..|.-+.+.|+.+.+.
T Consensus 87 ~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v---sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCCCc
Confidence 44566677644 666677777899999988765433333333233344443 478888888677788888875432
Q ss_pred --eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 227 --VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 227 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
........ .....++.+. +....+..+ +.+.+-|+........+........+.++..+++
T Consensus 162 ~lagrya~~~--~d~~~v~ISG--n~AYvA~~d-------------~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn 224 (370)
T COG5276 162 QLAGRYALPG--GDTHDVAISG--NYAYVAWRD-------------GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN 224 (370)
T ss_pred eeeeeeccCC--CCceeEEEec--CeEEEEEeC-------------CCeEEEEccCCCCCeEEEEEecCCceEEEEecCC
Confidence 11111111 1123344432 222233233 5888888876543333221122235788888877
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
..+++.. +--+.+-|..+.+....+- ....++.--.+.-.+++......+.-+.+-|+.+...+.....+..
T Consensus 225 r~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t---- 298 (370)
T COG5276 225 RAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDT---- 298 (370)
T ss_pred eeEEEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccC----
Confidence 6666654 3347788877655333322 2222222212333566777777788888888887654432221111
Q ss_pred CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....-..+ ...+.++..+..+ ...+-+....+-.-...+...-+.+.+.+-+.+.+.+...++-+.||+.
T Consensus 299 --~g~~a~gi--~ay~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 299 --AGYQAAGI--RAYGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred --CCccccce--EEecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 11111122 2234455444444 3444454433322223333334455555556668888999999999985
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.96 E-value=0.29 Score=44.75 Aligned_cols=148 Identities=13% Similarity=0.173 Sum_probs=82.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEe---cCCCeEEEEEcCCCcEEEEEcCCCc--------
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWE---CKSDRLLLIGTADGGIKAWNVDAKR-------- 225 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~~wd~~~~~-------- 225 (458)
...|+.|+..|.++||+........ .........+|..+..- +......++.-.-..+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4579999999999999985544221 22223345677777643 2223333333455678888773211
Q ss_pred -eeeeccCCCCCCceeeeeecCC-----CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 226 -VVCDLNTTDAFPSVLDLKCSPV-----EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 226 -~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
.+..+..|.-......+++-|- ...+...+.| |.+.+|+-+.......+...-. ...+
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~D-------------G~L~~feqe~~~f~~~lp~~ll---PgPl 180 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMD-------------GSLSFFEQESFAFSRFLPDFLL---PGPL 180 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecC-------------ceEEEEeCCcEEEEEEcCCCCC---CcCe
Confidence 0011111111112223333221 1234444444 7999999876444333332222 3447
Q ss_pred EEccCCCEEEEEecCCeEEEEeC
Q 012699 300 CFNHNGKILAASAVDGMIHMFDM 322 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~ 322 (458)
++.+.-..|++++.+..+..|..
T Consensus 181 ~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 181 CYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred EEeecCCEEEEecCceeEEEecH
Confidence 78888888999998888988875
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.003 Score=50.70 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=83.1
Q ss_pred EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
.+..-+.+|.|+-++++..+........ +.+ .....-+..++.++.+ |.|.+|........
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-----~~e~~~v~~~~~~~~vG~~d-------------g~v~~~n~n~~g~~ 93 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-----IDEGQRVVTASAKLMVGTSD-------------GAVYVFNWNLEGAH 93 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-----hhcceeecccCceEEeeccc-------------ceEEEecCCccchH
Confidence 3455567788887777654432211110 111 1112223344444444 79999887632211
Q ss_pred EEeecCCCCCcEEE-EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-CCeEEEEEcCCCCEEEEe--cCCCeEE
Q 012699 285 TVLPLGEDPPAITS-LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-SAISSILFGPDETSIFSL--GSDGKII 360 (458)
Q Consensus 285 ~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~ 360 (458)
........ ..|.+ +.--.++.+..++..||.|+.|++.-.+.+.....|+ .++.....+..++.++.+ |.|..++
T Consensus 94 ~d~~~s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 94 SDRVCSGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLK 172 (238)
T ss_pred HHhhhccc-ccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhh
Confidence 11111111 12222 2222345688899999999999998888877777777 566666666667777777 7788888
Q ss_pred EEeccCC
Q 012699 361 EWSLQNQ 367 (458)
Q Consensus 361 iwd~~~~ 367 (458)
.|++...
T Consensus 173 ~W~ve~~ 179 (238)
T KOG2444|consen 173 KWNVEKI 179 (238)
T ss_pred hcchhhh
Confidence 8888753
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.92 E-value=0.0046 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
...|.+++|+|...+||.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
No 404
>PHA03098 kelch-like protein; Provisional
Probab=96.84 E-value=0.22 Score=48.21 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=92.9
Q ss_pred CCCEEEEEeCCC------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCce
Q 012699 158 SGNNIASASVDG------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKRV 226 (458)
Q Consensus 158 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~ 226 (458)
++..++.|+.++ .+..||..+.+............. .+++. -++.+++.|+.+ ..+..||..+++.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-PGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-ceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 455666666542 466777766554321111111111 12222 357777888765 3577888887764
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
...-..+. .........-++...+.|+....... ...+..||+.+.+....-........ .+++ ..+++
T Consensus 371 ~~~~~lp~--~r~~~~~~~~~~~iYv~GG~~~~~~~-------~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~ 439 (534)
T PHA03098 371 REEPPLIF--PRYNPCVVNVNNLIYVIGGISKNDEL-------LKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGK 439 (534)
T ss_pred eeCCCcCc--CCccceEEEECCEEEEECCcCCCCcc-------cceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCE
Confidence 43222111 11111112235566666664321100 13788999887554332221111111 1222 23566
Q ss_pred EEEEEecC--------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCC
Q 012699 307 ILAASAVD--------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQ 367 (458)
Q Consensus 307 ~l~~~~~d--------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 367 (458)
.++.|+.+ ..+.+||..+.+.... +.........+.+ +++.++.|+.+ +.+.+||..+.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 66666543 2388999877544321 1111111122222 56677777654 35777777654
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.74 E-value=0.14 Score=46.65 Aligned_cols=148 Identities=9% Similarity=0.062 Sum_probs=79.7
Q ss_pred cEEEEEEccCCCEEEEEe-----------cCC-eEEEEeCCC--Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe
Q 012699 295 AITSLCFNHNGKILAASA-----------VDG-MIHMFDMSA--GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGK 358 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 358 (458)
....++|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ .++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 357899999998776642 223 677776443 332 23333334456889999988 444 444433
Q ss_pred EEEEeccCCCee----EEeecCCcccCC-CCCCCceeEEEEccCCCEEEEEeCC-------------------ccEEEEE
Q 012699 359 IIEWSLQNQGQV----LWTRNCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGS-------------------VRAPIYQ 414 (458)
Q Consensus 359 i~iwd~~~~~~~----~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~-------------------~~i~i~~ 414 (458)
.++.|....... ..... .+... .........++|.|||.+.++-+.. +.+.-++
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~--~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLS--GFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEE--ccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 334354322111 00000 11111 1123457789999999876654421 3355555
Q ss_pred ccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699 415 VRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 415 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 447 (458)
..+... ..+...-.....++|+|+|+++++-.
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 544322 11111224467899999999877644
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.73 E-value=0.23 Score=48.10 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCC------cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 203 SDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 203 ~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
++.+++.|+.++ .+..||..+++....-..... ........-++..++.|+.+... ....+..|
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~~~~lyv~GG~~~~~--------~~~~v~~y 363 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVFNNRIYVIGGIYNSI--------SLNTVESW 363 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEECCEEEEEeCCCCCE--------ecceEEEE
Confidence 566777776543 577888887776432222211 11111222356666666654210 11367889
Q ss_pred ECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCC
Q 012699 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDET 348 (458)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 348 (458)
|..+.+....-.+... ..-.+++ .-+++..+.|+.+ ..+..||..+.+.... ++...... +++ ..+++
T Consensus 364 d~~~~~W~~~~~lp~~-r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~ 439 (534)
T PHA03098 364 KPGESKWREEPPLIFP-RYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGK 439 (534)
T ss_pred cCCCCceeeCCCcCcC-CccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCE
Confidence 9887654332222111 1111222 2356666777632 4688999876543221 11111111 222 23556
Q ss_pred EEEEecCC--------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEc
Q 012699 349 SIFSLGSD--------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQV 415 (458)
Q Consensus 349 ~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~ 415 (458)
.++.|+.+ ..+.+||..+.+- .... ... ........+. .+++.++.|+.+ +.+.+||.
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W---~~~~-~~~---~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNKW---TELS-SLN---FPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCce---eeCC-CCC---cccccceEEE--ECCEEEEEcCCcCCcccceeEEEeC
Confidence 66666643 2377888775421 1111 110 0111111122 267777777654 46788887
Q ss_pred cCC
Q 012699 416 RGH 418 (458)
Q Consensus 416 ~~~ 418 (458)
.+.
T Consensus 511 ~~~ 513 (534)
T PHA03098 511 KTN 513 (534)
T ss_pred CCC
Confidence 654
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.63 E-value=0.88 Score=45.52 Aligned_cols=210 Identities=9% Similarity=0.100 Sum_probs=114.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCCC------ceEEEEEec---------------CCCeEEEEEcCCCcEE
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCGT------EIMSLEWEC---------------KSDRLLLIGTADGGIK 217 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~---------------~~~~~l~~~~~dg~i~ 217 (458)
+..|+.++.++.|.-.|..+++.+-+........ ....+++.. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4466667777777777777766543221111000 012222221 1344788899999999
Q ss_pred EEEcCCCceeeeccCCCCC------Cce----eeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 218 AWNVDAKRVVCDLNTTDAF------PSV----LDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~------~~v----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
-.|.++|+.+..+...... ... ..+.-.| .+..++.++.... ........|.|+-+|.++++.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d---~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVAD---NYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccc---cccccCCCcEEEEEECCCCcEee
Confidence 9999999988765432110 000 0011111 1233444432110 00111124799999999999988
Q ss_pred EeecCCC-------C---------CcEEEEEEccCCCEEEEEe------------------cCCeEEEEeCCCCceeeee
Q 012699 286 VLPLGED-------P---------PAITSLCFNHNGKILAASA------------------VDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 286 ~~~~~~~-------~---------~~i~~~~~~~~~~~l~~~~------------------~dg~i~v~d~~~~~~~~~~ 331 (458)
.+..... . ..=..++++++..+++.+. ..+.|.-.|.++|+..-.+
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 7753210 0 0012345555555555432 1346777888888887776
Q ss_pred eCCCCCeE---------EEEEcC-CCC---EEEEecCCCeEEEEeccCCCeeE
Q 012699 332 PAHDSAIS---------SILFGP-DET---SIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 332 ~~~~~~v~---------~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
+.....++ -+.+.. +|+ .++.++.+|.+.+.|.++++.+.
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 64221111 122222 553 78899999999999999876543
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.62 E-value=0.9 Score=45.46 Aligned_cols=218 Identities=12% Similarity=0.106 Sum_probs=110.5
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc------eeeeeecCCCCeEEEe---ecccCCCCcceeeccceeEE
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS------VLDLKCSPVEPIFVSA---AASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~i~ 274 (458)
+..++.++.++.|.-.|..+|+.+..+........ ...+.+.....-.... ..-......++..+.++.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677778889999999999998887765432111 1222222110000000 00000112233444457999
Q ss_pred EEECCCCceeEEeecCCC----------CCcEEEEEEcc--CCCEEEEEec----------CCeEEEEeCCCCceeeeee
Q 012699 275 VWNMKTWKAMTVLPLGED----------PPAITSLCFNH--NGKILAASAV----------DGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~--~~~~l~~~~~----------dg~i~v~d~~~~~~~~~~~ 332 (458)
-.|.++++....+...+. ...-..+.-.| .+..+++|+. +|.|+-+|.++|+.+-.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999999998876642211 00000111122 2346666643 6889999999999887764
Q ss_pred CC---------CC--------Ce-EEEEEcCCCCEEEEecC------------------CCeEEEEeccCCCeeEEeecC
Q 012699 333 AH---------DS--------AI-SSILFGPDETSIFSLGS------------------DGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 333 ~~---------~~--------~v-~~~~~~~~~~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~~ 376 (458)
.- .+ .+ ..+++.|+...++.... .+.|.-.|.++++ ..|....
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk-~~W~~Q~ 432 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK-ERWVFQT 432 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc-eEEEecc
Confidence 21 00 11 22344444444443221 2345555555543 2332211
Q ss_pred Cc--ccCCCCCCCceeEEEEcc-CCC---EEEEEeCCccEEEEEccCCCcccc
Q 012699 377 SR--FCDPESSKSCRHEMALDV-NGR---RLLVTSGSVRAPIYQVRGHASGMR 423 (458)
Q Consensus 377 ~~--~~~~~~~~~~v~~~~~s~-~g~---~l~~~~~~~~i~i~~~~~~~~~~~ 423 (458)
.. .-.. .......-+.+.. +|+ .++.++.+|.++++|.++++.+..
T Consensus 433 ~~hD~WD~-D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 433 VHHDLWDM-DVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred cCCccccc-cccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 00 0000 0111122222333 563 788899999999999998876543
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.59 E-value=0.2 Score=40.73 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=41.3
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP 345 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 345 (458)
+++..+|++.++.-..++|..+|..+|+.+..+.-....|++++|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 44566888888888899999999999999999998899999999953
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.43 E-value=0.56 Score=40.95 Aligned_cols=228 Identities=11% Similarity=0.095 Sum_probs=102.0
Q ss_pred CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC---CCceeeeeecCCCCeEEEeecccCCCCccee
Q 012699 190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA---FPSVLDLKCSPVEPIFVSAAASRRYGSSNIY 266 (458)
Q Consensus 190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (458)
...++..+.|. ....-+++|. .+.| +-..+.|+.-........ ......+.+..+ ..++++ ..
T Consensus 15 t~~~l~dV~F~-d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~--------- 80 (302)
T PF14870_consen 15 TDKPLLDVAFV-DPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EP--------- 80 (302)
T ss_dssp -SS-EEEEEES-SSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ET---------
T ss_pred CCCceEEEEEe-cCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CC---------
Confidence 45578899997 5555555554 4443 222233332222111111 123556666543 333433 22
Q ss_pred eccceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEc
Q 012699 267 SWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFG 344 (458)
Q Consensus 267 ~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~ 344 (458)
.+.+.-...++.-..+.+. .-+.....+....++..++ .+..|.|+.=. +.++ -......-.+.+..+.-+
T Consensus 81 -----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 81 -----GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp -----TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred -----ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 3334444444444333221 1222333444434443333 34455444322 2232 223334455788899999
Q ss_pred CCCCEEEEecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCc--
Q 012699 345 PDETSIFSLGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HAS-- 420 (458)
Q Consensus 345 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~-- 420 (458)
++|+++++++.-....-||--.. -.+.. ......+..+.|+|++.+.+++ ..|.++.=+... ...
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~----------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHN----------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEc----------cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 99999988877666677775432 11111 1234568999999998887755 778888877221 111
Q ss_pred --ccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 421 --GMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 421 --~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
......-...+.+++|.+++...|+|+..
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 11111233458999999998877776643
No 411
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.38 E-value=0.49 Score=39.68 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=135.4
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.....++-. +++..-+++...+.|--.|..+|+....--... .....+...|++...++-+..
T Consensus 62 ~ap~dvapa-pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G--a~Phgiv~gpdg~~Witd~~~-------------- 124 (353)
T COG4257 62 SAPFDVAPA-PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG--ASPHGIVVGPDGSAWITDTGL-------------- 124 (353)
T ss_pred CCccccccC-CCCceEEecCccccceecCCCCCceEEEecCCC--CCCceEEECCCCCeeEecCcc--------------
Confidence 334555655 677788888888888888999888654332222 456678888888877765543
Q ss_pred eEEEEECCCCceeE-EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCE
Q 012699 272 SLTVWNMKTWKAMT-VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETS 349 (458)
Q Consensus 272 ~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 349 (458)
.|.-.|.++.+... .+..+..........|.+.|++-+++.. |.---.|.. ...+..+... ...-..|+..|+|..
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsv 202 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSV 202 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcE
Confidence 56666666544322 2222333456788999999998888753 211111211 1223333322 234567888999988
Q ss_pred EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-ccccCCCC
Q 012699 350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-GMRTLPHG 428 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-~~~~~~h~ 428 (458)
-++.-.++.|...|-..... ..+..+.........+--+|.|+.-++....+.++-+|.....- ...+.+-+
T Consensus 203 wyaslagnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ 275 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSK 275 (353)
T ss_pred EEEeccccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCC
Confidence 87777777787777765421 12233333344455566788898888888888888888765431 12222333
Q ss_pred CcEEEEEECCCCC
Q 012699 429 AAITTVDWHPTLP 441 (458)
Q Consensus 429 ~~v~~~~~~~~~~ 441 (458)
....++.....++
T Consensus 276 arpys~rVD~~gr 288 (353)
T COG4257 276 ARPYSMRVDRHGR 288 (353)
T ss_pred CCcceeeeccCCc
Confidence 4444555544444
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.29 E-value=0.12 Score=50.09 Aligned_cols=152 Identities=13% Similarity=0.134 Sum_probs=92.8
Q ss_pred CCEEEEEecCCeEEEEeCCCCcee------eeee----------------CCCCCeEEEEEcC--CCCEEEEecCCCeEE
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQI------TGWP----------------AHDSAISSILFGP--DETSIFSLGSDGKII 360 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~------~~~~----------------~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 360 (458)
..+++++. .+.|.||+....... ..+. .....|+.|.... +...|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777755 778999997542211 1110 0112345554433 456889999999999
Q ss_pred EEeccCCCe----e---E---EeecCCcccCCCCCCCceeEEEEc--cCCCEEEEEeCCccEEEEEccCCC-c--ccccC
Q 012699 361 EWSLQNQGQ----V---L---WTRNCSRFCDPESSKSCRHEMALD--VNGRRLLVTSGSVRAPIYQVRGHA-S--GMRTL 425 (458)
Q Consensus 361 iwd~~~~~~----~---~---~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~~~~~~~i~i~~~~~~~-~--~~~~~ 425 (458)
+|.++.--. . . .........-........+.++++ ...++||+++....|.||-..... . .....
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 998742100 0 0 000000001112234578889998 888999999988888888765421 1 11122
Q ss_pred CCCCcEEEEEECCCC-----C-eEEEecCCCcEEEEeC
Q 012699 426 PHGAAITTVDWHPTL-----P-MFLTGSADHSVQVMSL 457 (458)
Q Consensus 426 ~h~~~v~~~~~~~~~-----~-~l~s~~~dg~v~iw~l 457 (458)
.|...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 466789999997654 2 7888999999999886
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=96.22 E-value=0.92 Score=43.13 Aligned_cols=145 Identities=9% Similarity=-0.028 Sum_probs=72.1
Q ss_pred CCeEEEEEcCCC-----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 203 SDRLLLIGTADG-----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 203 ~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
++.++++|+.++ .+..||..+++....-.... .........-++...+.|+.+.. ..+..||
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~--~r~~~~~v~~~~~iYviGG~~~~-----------~sve~yd 337 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNS--PRLYASGVPANNKLYVVGGLPNP-----------TSVERWF 337 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCc--hhhcceEEEECCEEEEECCcCCC-----------CceEEEE
Confidence 456677777543 46778888776543322221 11111122345666677765321 2678888
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC---eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEE
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG---MIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFS 352 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~ 352 (458)
..+++....-.+.......... .-+|+..+.|+.++ .+..||.++.+.... +.........++ -+++..+.
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~ 413 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLV 413 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEE
Confidence 8765443322222111111222 23576777777553 477888876543321 111111111222 35555555
Q ss_pred ecCCCeEEEEeccCC
Q 012699 353 LGSDGKIIEWSLQNQ 367 (458)
Q Consensus 353 ~~~dg~i~iwd~~~~ 367 (458)
|+ .+.+||..+.
T Consensus 414 GG---~~e~ydp~~~ 425 (480)
T PHA02790 414 GR---NAEFYCESSN 425 (480)
T ss_pred CC---ceEEecCCCC
Confidence 53 4677887653
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=96.20 E-value=0.79 Score=43.59 Aligned_cols=188 Identities=9% Similarity=-0.095 Sum_probs=90.5
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC--CcEEEEEcCCCceeeec
Q 012699 158 SGNNIASASVDG-----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD--GGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 158 ~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~ 230 (458)
++..++.|+.++ ++..||..+............... .+++. -++.+.+.|+.+ ..+..||..+++....-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 345567776543 466777766543211111111111 12222 357777777754 35788888766543322
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEE
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (458)
.... .........-++...+.|+.+.. ...+..||.++.+-...-........ .+++ .-+++..+.
T Consensus 348 ~l~~--~r~~~~~~~~~g~IYviGG~~~~----------~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~~~~IYv~ 413 (480)
T PHA02790 348 SLLK--PRCNPAVASINNVIYVIGGHSET----------DTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VFGRRLFLV 413 (480)
T ss_pred CCCC--CCcccEEEEECCEEEEecCcCCC----------CccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EECCEEEEE
Confidence 2221 11112223345667777765421 12677899877554432222111111 1222 235655566
Q ss_pred EecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCC
Q 012699 311 SAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQ 367 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 367 (458)
| |.+.+||.++.+... .++........+. -+++..+.|+.+ ..+..||..+.
T Consensus 414 G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 414 G---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred C---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 5 457889987654432 2221122222222 356677777754 24556666543
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.18 E-value=1.1 Score=41.93 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=68.4
Q ss_pred CCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCC----ccccccC--CC--ceEEEEEecCCCeEEEEEcCCCc
Q 012699 148 SPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPAS----RNATIYC--GT--EIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 148 ~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~--~~--~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
..|..+.|.|- ...|+...-...|.||.+.-..... ...+... .- -...+.|+ |....|+.-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH-Pk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH-PKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc-CCCceEEEEecCce
Confidence 45889999984 3345556667899999875221100 0011111 11 13456799 44555555544444
Q ss_pred EEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 216 IKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 216 i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
-.++++.... ....++.. +.|.+.+|.+||+.++.+-... =.-++||-..
T Consensus 136 SV~~sV~~d~srVkaDi~~~---G~IhCACWT~DG~RLVVAvGSs------------LHSyiWd~~q 187 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTS---GLIHCACWTKDGQRLVVAVGSS------------LHSYIWDSAQ 187 (671)
T ss_pred eEeeeeeeCCceEEEeccCC---ceEEEEEecCcCCEEEEEeCCe------------EEEEEecCch
Confidence 4455655433 33333333 6799999999999888776553 1667888654
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.16 E-value=0.2 Score=48.05 Aligned_cols=124 Identities=15% Similarity=0.091 Sum_probs=78.0
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIK 217 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~ 217 (458)
...++..-.....-+.-+.-++.-+.-+...++.|||...+..... ........|.++.|.. ++++.+++.+....|.
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~ 99 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVL 99 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eeecCCCceeeceeeecCCCCEEEEEEcCcEEE
Confidence 3334444444455555555554444444455799999988764432 2335578899999964 6778888888889999
Q ss_pred EEEcCC---------CceeeeccCCCC-CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699 218 AWNVDA---------KRVVCDLNTTDA-FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 218 ~wd~~~---------~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
+|.-.. -..+..+..... ..+|.+..|.++|..++.++. .+.++|-
T Consensus 100 l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN---------------qlfv~dk 155 (631)
T PF12234_consen 100 LYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN---------------QLFVFDK 155 (631)
T ss_pred EEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC---------------EEEEECC
Confidence 985421 112233322221 146888999999988776663 7888864
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.14 E-value=0.3 Score=45.52 Aligned_cols=151 Identities=12% Similarity=0.196 Sum_probs=89.4
Q ss_pred cEEEEEEccCCCEEE-EEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCC
Q 012699 295 AITSLCFNHNGKILA-ASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~-~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~ 367 (458)
++..++|. ||+.++ +.- .+|.+++=| .+.+.. -..|..+.|.|- ...|.+......|.+|.+...
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 47788886 555444 321 233333322 222333 345899999983 345666778889999998632
Q ss_pred C----eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc-ccCCCCCcEEEEEECCCCCe
Q 012699 368 G----QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM-RTLPHGAAITTVDWHPTLPM 442 (458)
Q Consensus 368 ~----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 442 (458)
. +......|.. .+...--...+.|+|....|++-.....-.++++....... .-....+.|-|.+|.+||+.
T Consensus 93 ~~e~~K~l~sQtcEi---~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 93 TTERNKLLMSQTCEI---REPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred ccccccceeeeeeec---cCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCE
Confidence 1 1111111111 11222234568899999999988777655666665443222 22356688999999999997
Q ss_pred EEEe-cCCCcEEEEe
Q 012699 443 FLTG-SADHSVQVMS 456 (458)
Q Consensus 443 l~s~-~~dg~v~iw~ 456 (458)
|+.+ |..=.-+|||
T Consensus 170 LVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEEeCCeEEEEEec
Confidence 6654 3333466776
No 418
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.10 E-value=1.1 Score=41.10 Aligned_cols=184 Identities=11% Similarity=0.070 Sum_probs=95.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-------------
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV------------- 226 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------------- 226 (458)
.+|..=+.||.+.+++-+.-...........+++ +.|. +..+.+++++.+..+.-|....-..
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~-~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~ 221 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYC-PRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQ 221 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEe-ecCCEEEEecCceeEEEecHHHhhhccccccccccccc
Confidence 5677779999999998665432211122223344 4555 5566788888888888886421100
Q ss_pred ----------eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 227 ----------VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 227 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
..++...+..-.+..+.++.....++.-+.. .+.+.+.. |......+++..+ .
T Consensus 222 ~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger--------------~Lf~l~~~-G~l~~~krLd~~p--~ 284 (418)
T PF14727_consen 222 DISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER--------------SLFCLKDN-GSLRFQKRLDYNP--S 284 (418)
T ss_pred cccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc--------------eEEEEcCC-CeEEEEEecCCce--e
Confidence 0111111111112222333233333333332 55555553 4444444443322 1
Q ss_pred EEEEEcc----CC---CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE---cCCCCEEEEecCCCeEEEEeccC
Q 012699 297 TSLCFNH----NG---KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILF---GPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 297 ~~~~~~~----~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
....|.. ++ ..+++++.++++.||.=. +.+..-+....+| ++.. ..-...|++-+.+|.+.+--+.+
T Consensus 285 ~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 285 CFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred eEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 1111211 22 248888999999999743 3333333223333 3333 22334888899999999988876
Q ss_pred C
Q 012699 367 Q 367 (458)
Q Consensus 367 ~ 367 (458)
.
T Consensus 362 d 362 (418)
T PF14727_consen 362 D 362 (418)
T ss_pred C
Confidence 4
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=95.97 E-value=1.1 Score=40.13 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=84.1
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEE-eCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMF-DMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~-d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
...+..+.+.|++.+++++ ..|.+..- | ..++ .......-...++++.+.|+++.++.+ ..|.+++=....+ ..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G-~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDL-ES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCC-Cc
Confidence 4568899999998777665 45655432 2 1222 112222335678999999998876654 4566543222221 11
Q ss_pred EEeecCCcccCC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEe
Q 012699 371 LWTRNCSRFCDP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 371 ~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~ 446 (458)
|.. ...+ ......+..+.+.|+++.++++ .+|.+. ...+.++.-.... .-....+.+.|..+++.++ .
T Consensus 248 -W~~----~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 248 -WSK----PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred -ccc----ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 110 0011 1122457788999988766544 556444 3444433222221 2224578888887776655 5
Q ss_pred cCCCcEEEEe
Q 012699 447 SADHSVQVMS 456 (458)
Q Consensus 447 ~~dg~v~iw~ 456 (458)
+..|.|.-|+
T Consensus 320 G~~G~il~~~ 329 (334)
T PRK13684 320 GQRGVLLRYV 329 (334)
T ss_pred CCCceEEEec
Confidence 5688887765
No 420
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.90 E-value=0.91 Score=42.13 Aligned_cols=53 Identities=15% Similarity=0.247 Sum_probs=36.3
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeee-----CCCCCeEEEEEcCCC
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWP-----AHDSAISSILFGPDE 347 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 347 (458)
....|+|.|+|++|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 468899999998776654469999998654432 22111 135678899999874
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.88 E-value=0.3 Score=48.21 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=51.6
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCC----------Cc--cccc---------CCCCCcEEEEEECCCC---C
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH----------AS--GMRT---------LPHGAAITTVDWHPTL---P 441 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~----------~~--~~~~---------~~h~~~v~~~~~~~~~---~ 441 (458)
...|..+.++|+|++|+..+..| |.|..+... +. ..+. ..+...|..+.|+|.+ .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34689999999999999988866 444444321 11 0010 0345689999999985 5
Q ss_pred eEEEecCCCcEEEEeCC
Q 012699 442 MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 442 ~l~s~~~dg~v~iw~l~ 458 (458)
.|+.-..|+++|+||+.
T Consensus 163 ~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEEEecCCEEEEEecC
Confidence 88888899999999974
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.82 E-value=1.1 Score=38.56 Aligned_cols=206 Identities=14% Similarity=0.115 Sum_probs=112.0
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCC----CCCCcccccc------CCCceEEEEEecCC-----------CeEEE
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSS----TPASRNATIY------CGTEIMSLEWECKS-----------DRLLL 208 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~~~~~~------~~~~v~~~~~~~~~-----------~~~l~ 208 (458)
-+.|+++|.+.+-++....+...+||.... ........+. .....+.+.|+... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 467999999988787777889999998611 1111111111 12356677776211 13467
Q ss_pred EEcCCCcEEEEEcCCCce---e--eeccCCCCCCcee-eeeec--CCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 209 IGTADGGIKAWNVDAKRV---V--CDLNTTDAFPSVL-DLKCS--PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 209 ~~~~dg~i~~wd~~~~~~---~--~~~~~~~~~~~v~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
.+++||+|.-|...-+.. . ..+.... ...++ .+++. ..+..|..+... .++|.+||-.=
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavYkGLAi~~~~~~~~LYaadF~------------~g~IDVFd~~f 171 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVYKGLAVGPTGGGDYLYAANFR------------QGRIDVFKGSF 171 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCC-CcceeeeeEEeecCCCceEEEeccC------------CCceEEecCcc
Confidence 889999999998543322 1 1111111 12232 23333 234455444433 26999998543
Q ss_pred CceeE--Eee---cCCC--CCcE---------EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEE
Q 012699 281 WKAMT--VLP---LGED--PPAI---------TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSIL 342 (458)
Q Consensus 281 ~~~~~--~~~---~~~~--~~~i---------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~ 342 (458)
.+... .+. +... +-.| +-..-.++.+.=+.|..-|.|-+||+. +..++++. +.-..-+.|+
T Consensus 172 ~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 172 RPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred ccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceee
Confidence 22110 010 0000 0011 111112222222233345789999976 77777763 3334567788
Q ss_pred EcC------CCCEEEEecCCCeEEEEeccCCCe
Q 012699 343 FGP------DETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 343 ~~~------~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
..| .+.+|+---.||+|..||..++..
T Consensus 251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~ 283 (336)
T TIGR03118 251 IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQ 283 (336)
T ss_pred eChhhhCCCCCCeEEeecCCceeEEecCCCCce
Confidence 766 567777767799999999887643
No 423
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.084 Score=52.72 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=89.9
Q ss_pred cEEEEEEccCCCEEEEEec--CCeEEEEeCCCCceee-----eee------CCCCCeEEEEEcCCCC-EEEEecCCCeEE
Q 012699 295 AITSLCFNHNGKILAASAV--DGMIHMFDMSAGLQIT-----GWP------AHDSAISSILFGPDET-SIFSLGSDGKII 360 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 360 (458)
++..+...+|+...++... +-.|+.||+++-..-. -+. ....-..++.|+|.-. ..+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 3556666777665554433 3478999987532111 111 1123455778888543 456677799998
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc--cccC-CCCCcEEEEEEC
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--MRTL-PHGAAITTVDWH 437 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~h~~~v~~~~~~ 437 (458)
+..+........ ........++++|+|.|+.+++|-.+|++.-|........ .... .....|.+++|-
T Consensus 182 V~~~~~~~~~v~---------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 182 VKSTKQLAQNVT---------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhhhhhhc---------ccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEe
Confidence 888764332211 1234556899999999999999999999988876544211 1111 124789999998
Q ss_pred CCCCeEEE
Q 012699 438 PTLPMFLT 445 (458)
Q Consensus 438 ~~~~~l~s 445 (458)
..-.+|++
T Consensus 253 ~t~eflvv 260 (1405)
T KOG3630|consen 253 STQEFLVV 260 (1405)
T ss_pred cceeEEEE
Confidence 77776664
No 424
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.79 E-value=1.3 Score=39.54 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred CcEEEEEEccCCCEEEEEecCCe------EEEEeCCC--C--cee-----eeeeCCCC--------CeEEEEEcCCCCEE
Q 012699 294 PAITSLCFNHNGKILAASAVDGM------IHMFDMSA--G--LQI-----TGWPAHDS--------AISSILFGPDETSI 350 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~------i~v~d~~~--~--~~~-----~~~~~~~~--------~v~~~~~~~~~~~l 350 (458)
+.+..+.+.|++..+++.+.+|. ++.+++.. + ..+ ..+....+ ..-+|++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45788899866556666677777 66666543 1 111 11111111 33478887788877
Q ss_pred EEecCC------CeEEEEeccCCCeeEEeecCCccc-------CCCCCCCceeEEEEccCCCEEEEEeCCc-------c-
Q 012699 351 FSLGSD------GKIIEWSLQNQGQVLWTRNCSRFC-------DPESSKSCRHEMALDVNGRRLLVTSGSV-------R- 409 (458)
Q Consensus 351 ~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~~~~~~-------~- 409 (458)
++.-.+ ..|+.++.. + ........+... .....+...-+++++|+|+.|+++.+.. .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 776666 778777765 2 222211111111 2234566788999999999777665422 1
Q ss_pred ------EEEEEccCC--C-ccccc----CC-----CCCcEEEEEECCCCCeEEEe-----cCCCcEEEEeC
Q 012699 410 ------APIYQVRGH--A-SGMRT----LP-----HGAAITTVDWHPTLPMFLTG-----SADHSVQVMSL 457 (458)
Q Consensus 410 ------i~i~~~~~~--~-~~~~~----~~-----h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iw~l 457 (458)
++++..... . ....+ .. ....|+.+.+-+++++|+-= +....++|+.+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 455544422 1 11111 11 45689999999999977641 13445666543
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.77 E-value=0.0015 Score=58.39 Aligned_cols=148 Identities=14% Similarity=0.233 Sum_probs=99.9
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
.....|.|.+.+ ++.++.+..+..||-.. +........ ....+++|..++..++...... +.+
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~t---g~aldm~wDkegdvlavlAek~------------~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNPT---GKALDMAWDKEGDVLAVLAEKT------------GPI 99 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCCc---hhHhhhhhccccchhhhhhhcC------------CCe
Confidence 345567755555 77778888888888543 333222222 4567788888887666554443 599
Q ss_pred EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
.+||+.+..... +...+. ..-.-+.|++....++.|...|.+.+|+..+.+.+...-.|...++++++.+.+ +.+.+
T Consensus 100 ylwd~n~eytqq-LE~gg~-~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~ 176 (615)
T KOG2247|consen 100 YLWDVNSEYTQQ-LESGGT-SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILC 176 (615)
T ss_pred eechhhhhhHHH-HhccCc-chHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeec
Confidence 999998643322 222221 112227899999999999999999999988877666655689999999999877 55556
Q ss_pred cCCCeEEE
Q 012699 354 GSDGKIIE 361 (458)
Q Consensus 354 ~~dg~i~i 361 (458)
+.|..+.+
T Consensus 177 dcd~~L~v 184 (615)
T KOG2247|consen 177 DCDNTLSV 184 (615)
T ss_pred CcHHHHHH
Confidence 66654433
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=1 Score=43.45 Aligned_cols=181 Identities=12% Similarity=0.173 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee-ccCCCCCCceeeeeecC
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~ 246 (458)
--.|+|++..+.. ... ..-.+.++..+.|+ +...|++...+|++++|++-....... .........|..+.+..
T Consensus 63 ~~~I~If~~sG~l-L~~--~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNISGQL-LGR--ILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEeccccc-hHH--HHhcCCCeeeeccc--CCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec
Confidence 3568888875443 322 22233488899997 455677788999999999864432221 11111113455666666
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC---EEEEEe-cCC-eEEEEe
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK---ILAASA-VDG-MIHMFD 321 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~-~dg-~i~v~d 321 (458)
+|-.+.+.+.. .+.+-+.........-..+...-+-.|-...+++. .++--. ..+ .+..-+
T Consensus 138 ~GVavlt~~g~--------------v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~ 203 (829)
T KOG2280|consen 138 NGVAVLTVSGQ--------------VILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE 203 (829)
T ss_pred CceEEEecCCc--------------EEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence 66666655543 33333333211111101011111112222222221 111110 011 111111
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
....+ ...+....+.+..+..||+.++|+--..+|.|.+-++...+
T Consensus 204 ~~~~q-~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 204 ESRVQ-LHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred ccccc-ccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 11122 22222224568889999999999999999999988877543
No 427
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.72 E-value=1.6 Score=39.99 Aligned_cols=91 Identities=16% Similarity=0.202 Sum_probs=53.5
Q ss_pred EEEeCCCCCEEEEEeCCCcEEE---EecCCCC---CCCc---cccccCC--CceEEEEEec----------CCCeEEEEE
Q 012699 152 CCRFSSSGNNIASASVDGTVRI---WTYDSST---PASR---NATIYCG--TEIMSLEWEC----------KSDRLLLIG 210 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~~dg~v~i---wd~~~~~---~~~~---~~~~~~~--~~v~~~~~~~----------~~~~~l~~~ 210 (458)
.++.+|+++.|+.+..+..+.+ |+..... .... ......+ ..|+++.|-| ++...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677889999888877766555 5432111 1100 0111111 4677777654 245789999
Q ss_pred cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec
Q 012699 211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS 245 (458)
Q Consensus 211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~ 245 (458)
..+|.|++|.. +|..+..-..+. .+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~--~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHE--EPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCc--cceEEEEec
Confidence 99999999986 455443333332 456665554
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.67 E-value=0.42 Score=45.97 Aligned_cols=118 Identities=11% Similarity=0.145 Sum_probs=73.1
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEc--CCCCEEEEecCCCeEEEEeccCC----
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFG--PDETSIFSLGSDGKIIEWSLQNQ---- 367 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~---- 367 (458)
.+.-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |++..+++.+....|.+|--...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34455555556555555555689999998876544322 347789999985 58889999999999999864311
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
..+.+. .............+|....|.++|.+++.+ ++.++|++-
T Consensus 111 ~~p~w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CCcccc-eeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 111111 000111111233568889999999877644 345777764
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.35 Score=44.22 Aligned_cols=152 Identities=14% Similarity=0.149 Sum_probs=89.0
Q ss_pred CCCeEEE-EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 202 KSDRLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 202 ~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
.+..+++ .|.....++-.|++.|+.+.....+.. + -+.+.|..+.--.. ....+.+.++..|.-.|.+-
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---v-vVqy~p~~kf~qmt------~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---V-VVQYNPYFKFQQMT------DEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCc---c-eeecCCchhHHhcC------ccceEEeecccceEEecccc
Confidence 4444444 455566788889999999888877753 2 45566653311000 00011111123555556553
Q ss_pred Cc-eeEEeecCC--CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC
Q 012699 281 WK-AMTVLPLGE--DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 281 ~~-~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 357 (458)
.. .+....... ......+..-. ...++++|+..|.|++||.-..+....+++-...|..+..+.+|+++++.+. .
T Consensus 547 ~gNKi~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~ 624 (776)
T COG5167 547 RGNKIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-N 624 (776)
T ss_pred cCCceeeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-c
Confidence 22 222221111 11222333322 3459999999999999996554555566777889999999999998776554 4
Q ss_pred eEEEEecc
Q 012699 358 KIIEWSLQ 365 (458)
Q Consensus 358 ~i~iwd~~ 365 (458)
.+.+-|++
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 67777775
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.61 Score=37.37 Aligned_cols=172 Identities=15% Similarity=0.203 Sum_probs=92.3
Q ss_pred CCCEEEEEeC--CCcEEEEecCCCCCCCcccccc---CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 158 SGNNIASASV--DGTVRIWTYDSSTPASRNATIY---CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 158 ~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
+|.++.+.+. ...|++||+.+++.+....... .+..++.+ .+......-.+|.-..+|.++-+.+..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4566666654 3469999999877543222110 11122211 122233344578888899988877766654
Q ss_pred CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCCCEEE
Q 012699 233 TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNGKILA 309 (458)
Q Consensus 233 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~ 309 (458)
.. .-+.++. ++..++.+... .+++.-|.++......+.......+ ++.+.|- +|...|
T Consensus 130 ~G---eGWgLt~--d~~~LimsdGs-------------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyA 190 (262)
T COG3823 130 EG---EGWGLTS--DDKNLIMSDGS-------------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYA 190 (262)
T ss_pred CC---cceeeec--CCcceEeeCCc-------------eEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEE
Confidence 42 3344433 33334443333 3888888877655554433222222 3334443 454444
Q ss_pred EEecCCeEEEEeCCCCceeeeee------------CCCCCeEEEEEcCCCC-EEEEe
Q 012699 310 ASAVDGMIHMFDMSAGLQITGWP------------AHDSAISSILFGPDET-SIFSL 353 (458)
Q Consensus 310 ~~~~dg~i~v~d~~~~~~~~~~~------------~~~~~v~~~~~~~~~~-~l~~~ 353 (458)
-.-.+..|...|..+|+.+..+. .|.+..+.+++.|++. ++++|
T Consensus 191 NVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 191 NVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44444456666666666554432 3455678899999774 45544
No 431
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.15 E-value=3.2 Score=40.28 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=46.8
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
...++++.-+|.++.++.+..||.|++|++....... ......+-..+.|. ..+ |++.+.|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk---i~~~~~p~~nlv~t-nhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK---ICEEAKPKENLVFT-NHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh---hhhhcCCccceeee-ccc--eEEEeccchhheeec
Confidence 3457778888999999999999999999986654321 11222334455665 333 677777777777753
No 432
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=2 Score=36.64 Aligned_cols=234 Identities=10% Similarity=0.045 Sum_probs=123.6
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
-.++.. .|++...+..|.-+.+.|+.+.+........ ........++.+ +++.+.+..|+-+.+-|+.......
T Consensus 131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPv 205 (370)
T COG5276 131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPV 205 (370)
T ss_pred EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCe
Confidence 344444 4678877776666778888765543211111 122233556655 7778888899999999987654322
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
.+........+.++..+++..+++.... .+.+-|..+.+....+...+...++.--.+.-.+++.
T Consensus 206 li~~~n~g~g~~sv~vsdnr~y~vvy~e---------------gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 206 LIGSYNTGPGTYSVSVSDNRAYLVVYDE---------------GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYA 270 (370)
T ss_pred EEEEEecCCceEEEEecCCeeEEEEccc---------------ceEEEecCCCCCceEeeccccCCcccccceeccccee
Confidence 2222222136777888877766666553 5666777665544444332222222211222345666
Q ss_pred EEEecCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 309 AASAVDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
.....+.-+.+-|..+... ...+......-..+..+ +.++..+..+ +..+-+....+.. ......
T Consensus 271 Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m---------~~~~g~ 338 (370)
T COG5276 271 YVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPPSMM---------DKRPGR 338 (370)
T ss_pred eeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCChhhc---------ccccCc
Confidence 6666666677777665321 11111111122333332 3344444433 3444444432211 011122
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
...+.+.+.+-+.+.+.....++.+.||+.
T Consensus 339 ~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 339 PTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 223444555556677778888888888875
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.83 E-value=1.9 Score=42.93 Aligned_cols=86 Identities=12% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC----------CeeE--EeecCCcccCCCCCCCceeEEEEccC---CC
Q 012699 335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ----------GQVL--WTRNCSRFCDPESSKSCRHEMALDVN---GR 399 (458)
Q Consensus 335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~---g~ 399 (458)
.-.|..|.++|+|++|+..|..| |.|-.+... +... .........-.......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688999999999999888865 445555321 0100 00000111112234567899999996 58
Q ss_pred EEEEEeCCccEEEEEccCCCcc
Q 012699 400 RLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 400 ~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
.|++-+.|+.+++||+.....+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 9999999999999999755433
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.83 E-value=0.0058 Score=54.79 Aligned_cols=142 Identities=12% Similarity=0.126 Sum_probs=98.1
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeec
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
....|-|.+.-++.++.+..+..||-. ++...... .++....++|..++..++. +-..+.+.+||+.+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq----- 110 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ----- 110 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-----
Confidence 445677877778888889899999954 44444333 3455667888888876554 445788999999864211
Q ss_pred CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
.+... ....-.-+.|++.+..++.+...+.+.|++..........-.|...+++++|.+.+. .+.++.|.
T Consensus 111 --qLE~g--g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 111 --QLESG--GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred --HHhcc--CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 11111 111112278999999999999899999999988765555555999999999999875 44455443
No 435
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.81 E-value=0.15 Score=29.14 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=27.5
Q ss_pred ceEEEEEecCCC--eEEEEEcCCCcEEEEEcCCC
Q 012699 193 EIMSLEWECKSD--RLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 193 ~v~~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~ 224 (458)
.+.++.|+|.++ .+|+.+-..|.+.++|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999997666 78999988999999999863
No 436
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.24 Score=49.76 Aligned_cols=161 Identities=10% Similarity=0.096 Sum_probs=93.5
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCC----------------ceeeeeeCC-CCCeEEEEEcCCCCEEE--EecCCC
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAG----------------LQITGWPAH-DSAISSILFGPDETSIF--SLGSDG 357 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~l~--~~~~dg 357 (458)
+.++.++.-..+++++..+.+.|+-..+- .....+..| .-++..+...+|+...+ ..+.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 44555665555555555665665543211 011222222 23566667777866544 334455
Q ss_pred eEEEEeccCCCeeEEeec--CCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699 358 KIIEWSLQNQGQVLWTRN--CSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV 434 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~ 434 (458)
.|..||+++......... ...............++.|.|.-. ..++...|+.|++..+...............++++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 799999986533221100 000001112233456677887543 34555667888888776554444444566789999
Q ss_pred EECCCCCeEEEecCCCcEEEEeC
Q 012699 435 DWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+|+|.|+.++.|-..|++.-|..
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred EeccccceeeEecCCCeEEEeec
Confidence 99999999999999999887753
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.71 E-value=2.7 Score=36.74 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=96.0
Q ss_pred eEEEEECCCCceeEEeecCCC----CCcEEEEEEccCC-----CEEEEEec-CCeEEEEeCCCCceeeeeeCC-------
Q 012699 272 SLTVWNMKTWKAMTVLPLGED----PPAITSLCFNHNG-----KILAASAV-DGMIHMFDMSAGLQITGWPAH------- 334 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~~-----~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~------- 334 (458)
.|.+||+.+.+.++.+.++.. ...+..+.+.... .+++.... .+.|.|||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 899999999999888877543 3467888887732 24444333 458999999987654433221
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEecCCCeEEEEeccCCCe---eEEeec--CCcccCCCCCCCceeEEEE
Q 012699 335 ------------DSAISSILFGP---DETSIFSLGSDGKIIEWSLQNQGQ---VLWTRN--CSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 335 ------------~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~--~~~~~~~~~~~~~v~~~~~ 394 (458)
...+..++.+| ++++|+-....+ -++|.+.+.-. ...... ...+...-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12356666655 556666554432 13343332100 000000 0000000001134567899
Q ss_pred ccCCCEEEEEeCCccEEEEEccCCCcccc--cC---CC-CCcEEEEEECC--CCCeEEEe
Q 012699 395 DVNGRRLLVTSGSVRAPIYQVRGHASGMR--TL---PH-GAAITTVDWHP--TLPMFLTG 446 (458)
Q Consensus 395 s~~g~~l~~~~~~~~i~i~~~~~~~~~~~--~~---~h-~~~v~~~~~~~--~~~~l~s~ 446 (458)
+++|.++++--..+.|..|+..+...... .. .. -..+.++.+.+ +|.+.+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999989999999999987332211 11 22 35788999999 77755543
No 438
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.65 E-value=3.4 Score=37.73 Aligned_cols=159 Identities=11% Similarity=0.004 Sum_probs=81.3
Q ss_pred CCeEEEEeCCCCCEEEEEe-----------CCC-cEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 148 SPISCCRFSSSGNNIASAS-----------VDG-TVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~-----------~dg-~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
.....|+|.++|+++++-. ..+ .|.+++-..+.-. ........-.....+++. +++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-VGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-cCC--EEEeCCC
Confidence 3455788999988776642 123 6666654322211 111112222345778887 555 4444544
Q ss_pred CcEEEEEcCCC-----c--ee-eeccCCC--CCCceeeeeecCCCCeEEEeecccCCCC------cceeeccceeEEEEE
Q 012699 214 GGIKAWNVDAK-----R--VV-CDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGS------SNIYSWGFASLTVWN 277 (458)
Q Consensus 214 g~i~~wd~~~~-----~--~~-~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~i~i~d 277 (458)
...++.|.... + .+ ..+.... .......+.+.|++.+.++.+....... ........|.+.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454321 1 11 1122211 1234778999999987776653211000 000011225677777
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (458)
...++. ..+. .+. .....++|+|+|+++++-.
T Consensus 171 pdg~~~-e~~a-~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVA-HGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEe-cCc-CCCccceECCCCCEEEEcc
Confidence 776543 3332 232 3457899999998877644
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.54 E-value=0.23 Score=41.21 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=51.7
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC-----CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP-----ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
+..++.+|++.+.+|.+++||+.+.+..........+... ......|..+.++.+|.-+++-+ +|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3456889999999999999999987665443222222211 14566788899998988776654 57788888754
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.46 E-value=5.5 Score=39.20 Aligned_cols=114 Identities=6% Similarity=0.022 Sum_probs=75.7
Q ss_pred cEEEEEEcc--CCCEEEEEecCCeEEEEeCCC-------C-------------ceeeeeeCCCCCeEEEEEc--CCCCEE
Q 012699 295 AITSLCFNH--NGKILAASAVDGMIHMFDMSA-------G-------------LQITGWPAHDSAISSILFG--PDETSI 350 (458)
Q Consensus 295 ~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~-------~-------------~~~~~~~~~~~~v~~~~~~--~~~~~l 350 (458)
.|+.+.... +...|+++..||.|.+|.+++ . ++...+. -...+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355555443 345788899999999997631 0 1122222 24578999998 788899
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC-----C-EEEEEeCCccEEEEEc
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-----R-RLLVTSGSVRAPIYQV 415 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~-~l~~~~~~~~i~i~~~ 415 (458)
|+++....|.||-........ .......+...|.+++|-++. . .|++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~------~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERF------YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccc------ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 999988889888776531111 011122366778889987643 2 6777788899998888
No 441
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.38 E-value=0.27 Score=28.09 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.4
Q ss_pred cEEEEEEccCC---CEEEEEecCCeEEEEeCCC
Q 012699 295 AITSLCFNHNG---KILAASAVDGMIHMFDMSA 324 (458)
Q Consensus 295 ~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~ 324 (458)
.+.++.|+|+. .+|+..-..|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58899999854 4888888889999999985
No 442
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.38 E-value=1.5 Score=32.52 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=70.3
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEec----CCCeEEEEEcCCCcEEEEEc
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWEC----KSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~dg~i~~wd~ 221 (458)
..-+|......|+.++.-|.|.|++....... .......-...|.+++--+ .....|+.|+. ..+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 34466666677888888999999987644321 1223344456677776443 23456777665 47999999
Q ss_pred CCCceeeeccCCCCCCceeeeeec---C-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCS---P-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
..+..+..-..++ .+.++.+- . ..++++.++. ..|.-||....+....
T Consensus 81 ~~N~d~Fyke~~D---Gvn~i~~g~~~~~~~~l~ivGGn--------------csi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFYKEVPD---GVNAIVIGKLGDIPSPLVIVGGN--------------CSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhhhhCcc---ceeEEEEEecCCCCCcEEEECce--------------EEEEEeCCCCcEEEEE
Confidence 9877665444443 34444442 2 2334444443 4777777766555443
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.12 E-value=2 Score=39.54 Aligned_cols=134 Identities=13% Similarity=0.192 Sum_probs=85.8
Q ss_pred CCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC--------CEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 304 NGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE--------TSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 304 ~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
+..+|+ .|.....++-.|++-|+.+..+..|... -+.|.|+. ..|+ |-.+..|.-.|.+-.+..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 344443 4555667888899999999999888775 47777742 2344 4444455555555433222111
Q ss_pred cCCcccCCCCCCCceeEEEEc----cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 375 NCSRFCDPESSKSCRHEMALD----VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s----~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
. .....+.-.|| ....++|+++..|.|++||--+......+.+....|..+..+.+|+++++.+..
T Consensus 555 e---------sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 E---------SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred e---------ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 1 11122222333 245689999999999999987765556666777899999999999966655543
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=0.81 Score=47.03 Aligned_cols=144 Identities=8% Similarity=0.113 Sum_probs=88.6
Q ss_pred ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEE--------cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILF--------GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
+.|..+.+|+.+++.....+.+-...|..+.. .|.=++++..+.--.|.++-+.-.................
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 35888999999997777777776667766653 3333455555555556666554322111110000111122
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccEEEEEcc--CC-----C-----------------cccccC-CCCCcEEEEEECC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR--GH-----A-----------------SGMRTL-PHGAAITTVDWHP 438 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~--~~-----~-----------------~~~~~~-~h~~~v~~~~~~~ 438 (458)
..+..|.++....+|+.+++|- || .+|.+. .. + .+..+. .+.++|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3456688888778888776554 44 445432 10 0 011222 4678999999998
Q ss_pred CCCeEEEecCCCcEEEEeCC
Q 012699 439 TLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 439 ~~~~l~s~~~dg~v~iw~l~ 458 (458)
....|.+-++.|+|++|++.
T Consensus 253 SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred ccceeeeeccCceEEEEEcc
Confidence 88899999999999999973
No 445
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.98 E-value=8 Score=39.30 Aligned_cols=172 Identities=12% Similarity=0.162 Sum_probs=90.8
Q ss_pred eEEEEECCCCceeEEeecCCC--CCcEEEEEEccCCC--EEEEEec-----------CCeEEEEeCC-CCceeeeee--C
Q 012699 272 SLTVWNMKTWKAMTVLPLGED--PPAITSLCFNHNGK--ILAASAV-----------DGMIHMFDMS-AGLQITGWP--A 333 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~--~l~~~~~-----------dg~i~v~d~~-~~~~~~~~~--~ 333 (458)
.|+++|..+++.+..+.+... .-.+....|+.... ++++|.. +|.++.|++- .++.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 689999999888877765433 22456666665332 4444432 3457777753 344332222 1
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
-.+++. +..|-..++++| ....+++||+.+.+.... .........|..+.+ .+..+++|.....++++
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk-------~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~ 1001 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRK-------CELKFIPNRISSIQT--YGARIVVGDIQESVHFV 1001 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhh-------hhhccCceEEEEEee--cceEEEEeeccceEEEE
Confidence 233443 445655555544 456899999987543321 111112334454444 56677777766555555
Q ss_pred EccCCC-cccccC--CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 414 QVRGHA-SGMRTL--PHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 414 ~~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..+... .+..+. .-...|+++.+-. -..+|.+..=|.+.+-.
T Consensus 1002 ~y~~~~n~l~~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1002 RYRREDNQLIVFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred EEecCCCeEEEEeCCCccceeeEEEEec-CCceeeccccCcEEEEE
Confidence 443322 222222 2334566666543 33466666656665543
No 446
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.95 E-value=0.47 Score=39.42 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=50.5
Q ss_pred EEEccCCCEEEEEeCCccEEEEEccCCCccccc------C--------CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT------L--------PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~------~--------~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+.+..++++|++.+.+|.+++||+...+..... . .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345678999999999999999999887654332 1 2456789999999998777665 578888875
Q ss_pred C
Q 012699 458 S 458 (458)
Q Consensus 458 ~ 458 (458)
+
T Consensus 95 ~ 95 (219)
T PF07569_consen 95 D 95 (219)
T ss_pred c
Confidence 3
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.92 E-value=3.8 Score=35.35 Aligned_cols=182 Identities=15% Similarity=0.205 Sum_probs=101.8
Q ss_pred EEEEEeCCCcEEEEecCCCCC--CCccccccC--CCc-eEEEEEec-CCCeEEEEE-cCCCcEEEEEcCCCceeee--cc
Q 012699 161 NIASASVDGTVRIWTYDSSTP--ASRNATIYC--GTE-IMSLEWEC-KSDRLLLIG-TADGGIKAWNVDAKRVVCD--LN 231 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~--~~~-v~~~~~~~-~~~~~l~~~-~~dg~i~~wd~~~~~~~~~--~~ 231 (458)
.++.+++||+|.-|...-... ......... ... -..+++.+ ..+.+|+.+ -..++|.++|-.-.+.... +.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 367788999999998533322 011111111 122 33445442 223444444 4578999998554332110 11
Q ss_pred CC---CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-----
Q 012699 232 TT---DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH----- 303 (458)
Q Consensus 232 ~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~----- 303 (458)
.. ... ....+.- -.+.++++-............+.+.|.|-+||+.. +.++++...+.-.....|+..|
T Consensus 182 DP~iPagy-APFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 182 DPALPAGY-APFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCC-CCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCC
Confidence 00 000 0111111 12334444333333334556666778999999874 6677675555555567777766
Q ss_pred -CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC------CeEEEEEcC
Q 012699 304 -NGKILAASAVDGMIHMFDMSAGLQITGWPAHDS------AISSILFGP 345 (458)
Q Consensus 304 -~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------~v~~~~~~~ 345 (458)
.+.+|+---.||+|..||..+++.+-.+....+ .++.|+|-.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 456677666799999999999888777765433 467777754
No 448
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.66 E-value=4.5 Score=35.36 Aligned_cols=175 Identities=12% Similarity=0.150 Sum_probs=87.9
Q ss_pred cEEEEEcCCCceeeeccCCCC----CCceeeeeecCCCC-----eEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 215 GIKAWNVDAKRVVCDLNTTDA----FPSVLDLKCSPVEP-----IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
.|.+||+.+++.++++..+.. .+...++.+..... ++..+... .+.|.++|+.+++..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~------------~~glIV~dl~~~~s~R 102 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG------------GPGLIVYDLATGKSWR 102 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT------------TCEEEEEETTTTEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC------------cCcEEEEEccCCcEEE
Confidence 466677777777666554432 13455666655322 22222222 2589999999877655
Q ss_pred EeecCCC-----------------CCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-----Cc---------eeeee
Q 012699 286 VLPLGED-----------------PPAITSLCFNH---NGKILAASAVDGMIHMFDMSA-----GL---------QITGW 331 (458)
Q Consensus 286 ~~~~~~~-----------------~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-----~~---------~~~~~ 331 (458)
....... ...+..++.+| +++.|+-....+ -++|.+.+ .. .+..+
T Consensus 103 v~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l 181 (287)
T PF03022_consen 103 VLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL 181 (287)
T ss_dssp EETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE
T ss_pred EecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec
Confidence 4421111 12355666655 566666654433 23333321 10 11222
Q ss_pred eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc--CCCEEEEEe
Q 012699 332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV--NGRRLLVTS 405 (458)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~ 405 (458)
-........++++++|..+++--..+.|..|+..+.-..... ..+......-..+..+.+.+ +|.+.+...
T Consensus 182 G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~---~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 182 GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENF---EILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCE---EEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccch---heeEEcCceeeccceeeeccccCceEEEEEC
Confidence 111235667889999988888888999999998862111000 00000111134577888888 776655543
No 449
>PRK10115 protease 2; Provisional
Probab=93.65 E-value=8.6 Score=38.54 Aligned_cols=197 Identities=9% Similarity=0.001 Sum_probs=97.5
Q ss_pred CeEEEEeCCCCCEEEEEeC-----CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEE
Q 012699 149 PISCCRFSSSGNNIASASV-----DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKA 218 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~ 218 (458)
.+..+.++||+++|+.+.. ..++++-|+.++..+.. .... .. ..++|.+.+..++++...+ ..|..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 3667889999998876532 23588889987753321 1111 12 4589985444455554422 36777
Q ss_pred EEcCCC--ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC--CCceeEEeecCCCCC
Q 012699 219 WNVDAK--RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK--TWKAMTVLPLGEDPP 294 (458)
Q Consensus 219 wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~--~~~~~~~~~~~~~~~ 294 (458)
+++.++ +....+...... .-.....+.++..++....... ++.+.+++.. .+.....+... . .
T Consensus 204 h~lgt~~~~d~lv~~e~~~~-~~~~~~~s~d~~~l~i~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~-~-~ 270 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDT-FYVSLHKTTSKHYVVIHLASAT----------TSEVLLLDAELADAEPFVFLPRR-K-D 270 (686)
T ss_pred EECCCChhHCeEEEeeCCCC-EEEEEEEcCCCCEEEEEEECCc----------cccEEEEECcCCCCCceEEEECC-C-C
Confidence 888877 333333322211 1123334447776654443321 1477888843 33332222211 1 1
Q ss_pred cEEEEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCC-C-CCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 295 AITSLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAH-D-SAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
....+. +.. ..|..-+.. ..|...++........+-.+ . ..+..+.+.. +..+++...++.-+++-+.
T Consensus 271 ~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 271 HEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEc
Confidence 122222 223 333333322 23444455421122233334 3 3677788773 3455566667776655544
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=2.8 Score=38.11 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=84.4
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCC---CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
+.+-|...++.|++. ..|.+.=|-... .-++..-....++|.++.|++|.+.||.--.|.+|.+++..........
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 445555444444443 334455554432 1222222345679999999999999999999999999998432211100
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCCCCeE
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPTLPMF 443 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l 443 (458)
..........|....|+.+ .-+|..+..| +.+|.....+...+.. .|...|+=..|.|+.+.+
T Consensus 105 -----~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 105 -----TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred -----HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence 0011123345888899877 4555555555 6777665554433333 688889999999988843
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=1.7 Score=40.10 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=46.6
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEE-----c----cCCCcc--cccC---------CCCCcEEEEEECCCC---CeEE
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQ-----V----RGHASG--MRTL---------PHGAAITTVDWHPTL---PMFL 444 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~-----~----~~~~~~--~~~~---------~h~~~v~~~~~~~~~---~~l~ 444 (458)
.|..+..++.|..++.++.+|.+.++= . +.++.. .+.. ...-.+..++|||+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467788899999999888888443322 1 112111 0111 122357788999987 4777
Q ss_pred EecCCCcEEEEeCC
Q 012699 445 TGSADHSVQVMSLS 458 (458)
Q Consensus 445 s~~~dg~v~iw~l~ 458 (458)
.-..|.+||+|+++
T Consensus 185 iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLS 198 (741)
T ss_pred EEecCcEEEEEecC
Confidence 77889999999975
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.43 E-value=1.8 Score=39.19 Aligned_cols=160 Identities=16% Similarity=0.222 Sum_probs=93.9
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc----EE-EEEEccCCCEEEEE
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA----IT-SLCFNHNGKILAAS 311 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~----i~-~~~~~~~~~~l~~~ 311 (458)
..+..+-..|+++.+..-+.. .+.++++.+......--.+..++. |+ .+..-..|.-+.++
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~--------------~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~ 286 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGS--------------ELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVV 286 (733)
T ss_pred cchHhhEECCCCCEEEEecCC--------------eEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEE
Confidence 567788899999988776664 888888765332221111111221 11 11122346678888
Q ss_pred ecCCeEEEE-eCCC-Cce----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 312 AVDGMIHMF-DMSA-GLQ----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 312 ~~dg~i~v~-d~~~-~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
+.||.|.-| |.+. +.+ ++.++-...++..+.-..+.+-+++-+..|++.++.-...+..... ..
T Consensus 287 ~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~----------~~ 356 (733)
T COG4590 287 HEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE----------RA 356 (733)
T ss_pred cCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh----------hh
Confidence 899988766 4443 221 2222222344444443334556777888888888776544333322 12
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
-..+..+++||.+.+|++- ..|.++++.+++..+.
T Consensus 357 ~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 357 YQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred hcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 2245678999999999764 3466999998876543
No 453
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=93.25 E-value=2.9 Score=40.81 Aligned_cols=135 Identities=10% Similarity=0.129 Sum_probs=67.4
Q ss_pred EEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-----EEEEeccCCC
Q 012699 298 SLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGK-----IIEWSLQNQG 368 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~ 368 (458)
-+.|.-|..+.+++... ..+++|.-+ |+.-..-...++.-..+.|-|+|..+++-..||. |+++.-+...
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 35666666677666543 346666532 3222111222333446899999999998876553 5555543211
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
.- .+....+....+..++|+-....++++ ..+.+.+|....-.-..+..-.-..+.-+.|+|...
T Consensus 285 HG-------ef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 285 HG-------EFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred cC-------CccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccC
Confidence 00 110111222334556666655555543 345688887654321111111223455667777644
No 454
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=6.4 Score=38.35 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGED 292 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~~ 292 (458)
-.|+||+.. |+.+..+.... +.+..+.|+.+..+++..-. |.+.+|++-...... ..-.+..
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~--~~lI~mgWs~~eeLI~v~k~--------------g~v~Vy~~~ge~ie~~svg~e~~ 126 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKH--GELIGMGWSDDEELICVQKD--------------GTVHVYGLLGEFIESNSVGFESQ 126 (829)
T ss_pred eeEEEEecc-ccchHHHHhcC--CCeeeecccCCceEEEEecc--------------ceEEEeecchhhhcccccccccc
Confidence 357777764 44444433332 36888999988777665543 599999976422211 1111222
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCC--CeEEEEEcCCCC---EEEEec-CCCeEEEEecc
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-HDS--AISSILFGPDET---SIFSLG-SDGKIIEWSLQ 365 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~--~v~~~~~~~~~~---~l~~~~-~dg~i~iwd~~ 365 (458)
...|..+.+..+|- ++-..+|.+.+-+-.....+.+++. ... +-.|-...+++. .++-.. ..+ ..++-..
T Consensus 127 ~~~I~ec~~f~~GV--avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~ 203 (829)
T KOG2280|consen 127 MSDIVECRFFHNGV--AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVE 203 (829)
T ss_pred cCceeEEEEecCce--EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccccee
Confidence 33466666666663 3334455555544222222333322 111 112222222211 111110 000 0111111
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-CCCCcEEEEEECCC
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-PHGAAITTVDWHPT 439 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~ 439 (458)
.... ...........+..+..||+.++|+.-...|.+.+-+.+..+....+. +-..+...++|.-+
T Consensus 204 ~~~~--------q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 204 ESRV--------QLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred cccc--------cccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 1100 111111224568889999999999999999999998887665444433 12223335555443
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=5.2 Score=37.17 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=43.8
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeC---------CCCceeeeee-----------CCCCCeEEEEEcCCC---CEEE
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDM---------SAGLQITGWP-----------AHDSAISSILFGPDE---TSIF 351 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~~---~~l~ 351 (458)
.|..+..++.|..++..+.+|.+.++=. +.++.....+ ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 5677888999999998888886554431 1222211100 111245566777754 4566
Q ss_pred EecCCCeEEEEeccCC
Q 012699 352 SLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 352 ~~~~dg~i~iwd~~~~ 367 (458)
.-+.|..|++||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 6667777777777654
No 456
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.82 E-value=5.2 Score=37.42 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=24.6
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.|.+++..+..+.|++...+|.|.+|++.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence 39999999999999999999999999973
No 457
>PRK10115 protease 2; Provisional
Probab=92.64 E-value=12 Score=37.48 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=66.9
Q ss_pred ceEEEEEecCCCeEEEEEc-CCC----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 193 EIMSLEWECKSDRLLLIGT-ADG----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~-~dg----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
.+..+.|+ +++++|+.+. .+| .|++.|+.++..+...... .-..++|.++++.++....+....
T Consensus 128 ~l~~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~~~~~w~~D~~~~~y~~~~~~~~------ 196 (686)
T PRK10115 128 TLGGMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VEPSFVWANDSWTFYYVRKHPVTL------ 196 (686)
T ss_pred EEeEEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cceEEEEeeCCCEEEEEEecCCCC------
Confidence 45667788 5666665543 333 6889999888643221111 114599999998777766542100
Q ss_pred ccceeEEEEECCCC--ceeEEeecCCCCCcEE-EEEEccCCCEEEEEec---CCeEEEEeC
Q 012699 268 WGFASLTVWNMKTW--KAMTVLPLGEDPPAIT-SLCFNHNGKILAASAV---DGMIHMFDM 322 (458)
Q Consensus 268 ~~~g~i~i~d~~~~--~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~v~d~ 322 (458)
....|..+++.++ +....+. +...... ....+.++++++..+. ++.+.+++.
T Consensus 197 -~~~~v~~h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 197 -LPYQVWRHTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred -CCCEEEEEECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 1137888999887 3334443 2212222 3344447887765544 357888885
No 458
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.63 E-value=2.3 Score=39.02 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=60.3
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC--------------
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS-------------- 203 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------- 203 (458)
.....|......+.+++.+|++++.|+...=|.|.++|+.++..+....-.. ...+.-+......
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCC
Confidence 3445566677779999999999988888778999999998876553222111 1111111100000
Q ss_pred --C-eEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699 204 --D-RLLLIGTADGGIKAWNVDAKRVVCDLNTT 233 (458)
Q Consensus 204 --~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 233 (458)
. -+++-+-.-|.|.+|.+++|..+..+...
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1 13444666889999999998877665543
No 459
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.54 E-value=3.1 Score=35.06 Aligned_cols=144 Identities=14% Similarity=0.153 Sum_probs=75.4
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-C--CeEEEEeCCCCceeeeee------CCCCCeEEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-D--GMIHMFDMSAGLQITGWP------AHDSAISSIL 342 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~i~v~d~~~~~~~~~~~------~~~~~v~~~~ 342 (458)
.-.+||+.+++..... .. .......-++-+||++|.+|+. + ..+++++.........+. .....--.+.
T Consensus 47 ~s~~yD~~tn~~rpl~-v~-td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT-VQ-TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEecc-CC-CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 5678898887665432 21 1122333457789999999875 2 357888754300000111 1112223344
Q ss_pred EcCCCCEEEEecCCC-eEEEEeccCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 343 FGPDETSIFSLGSDG-KIIEWSLQNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg-~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
.-|||+.|+.|+.+. +..+|.-.... ............. ......-..+...|+|++++.+..+. .|||..+...
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v 201 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTV 201 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeE
Confidence 457999999888864 34444432211 1111100000000 11222334577889999998888765 5567776643
No 460
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.51 E-value=8 Score=35.04 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=20.0
Q ss_pred cEEEEEccCCCcccccCCCC-CcEEEEEECCCCCeEEEecCCC
Q 012699 409 RAPIYQVRGHASGMRTLPHG-AAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 409 ~i~i~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg 450 (458)
.+.+||.++.+- ....... ..-...+..-++++++.||.+.
T Consensus 291 ~~e~yd~~~~~W-~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKW-SKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcc-cccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 467888765421 1111111 1112223445678888888763
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.43 E-value=0.22 Score=48.64 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=61.6
Q ss_pred eeEEEEECC--CCceeEEeec---CCCCCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEE
Q 012699 271 ASLTVWNMK--TWKAMTVLPL---GEDPPAITSLCFNH---NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSIL 342 (458)
Q Consensus 271 g~i~i~d~~--~~~~~~~~~~---~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 342 (458)
|.+.+||+. .|+....+.. ......+.-+.|.| +.-++..+-.++.+++........ ..+..|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 588888875 3443332221 11223345556655 566778888889998887654322 33455766555543
Q ss_pred -----------EcCCCCEEEEecCCCeEEEEeccC
Q 012699 343 -----------FGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 343 -----------~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
.+|||+.|++++.||.+++|.+.-
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 589999999999999999998753
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.16 E-value=8.5 Score=34.57 Aligned_cols=250 Identities=18% Similarity=0.211 Sum_probs=115.1
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeecc--CCCCCCceeeeeecCC----CCeEEEeecc-cCCCC
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLN--TTDAFPSVLDLKCSPV----EPIFVSAAAS-RRYGS 262 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~--~~~~~~~v~~~~~~~~----~~~~~~~~~~-~~~~~ 262 (458)
..+.|+|. ++++++++ ...|.|++++ ..+.. +..+. ..........++++|+ +.+.++.... ....
T Consensus 3 ~P~~~a~~-pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~- 78 (331)
T PF07995_consen 3 NPRSMAFL-PDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG- 78 (331)
T ss_dssp SEEEEEEE-TTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS-
T ss_pred CceEEEEe-CCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC-
Confidence 35789999 56766554 5699999999 33332 22221 1122356788999994 3333333321 0000
Q ss_pred cceeeccceeEEEEECCCC-------cee-EEeec-CCCCCcEEEEEEccCCCEEEEEecC-------------CeEEEE
Q 012699 263 SNIYSWGFASLTVWNMKTW-------KAM-TVLPL-GEDPPAITSLCFNHNGKILAASAVD-------------GMIHMF 320 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~-------~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~v~ 320 (458)
.....|.-|..... +.+ ..+.. .........|+|.|+|.+.++.+.. |.|.-.
T Consensus 79 -----~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri 153 (331)
T PF07995_consen 79 -----DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRI 153 (331)
T ss_dssp -----SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEE
T ss_pred -----CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEe
Confidence 00013433433322 111 11111 1122346779999999655554432 233333
Q ss_pred eCCCCce-------------eeee-eCCCCCeEEEEEcCC-CCEEEEe-cCCCeEEEEeccCCCeeEEe-----------
Q 012699 321 DMSAGLQ-------------ITGW-PAHDSAISSILFGPD-ETSIFSL-GSDGKIIEWSLQNQGQVLWT----------- 373 (458)
Q Consensus 321 d~~~~~~-------------~~~~-~~~~~~v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~----------- 373 (458)
+.. ++. ...+ .++. ....++|+|. |+++++= +.|+.=.|--+..+..--|.
T Consensus 154 ~~d-G~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~ 231 (331)
T PF07995_consen 154 DPD-GSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP 231 (331)
T ss_dssp ETT-SSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred ccc-CcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence 322 110 0011 1222 2457899998 6544321 22332233333322211000
Q ss_pred -----ecCCcccCC---CCCCCceeEEEEcc-------CCCEEEEEeCCccEEEEEccCCCccc---ccC-CCCCcEEEE
Q 012699 374 -----RNCSRFCDP---ESSKSCRHEMALDV-------NGRRLLVTSGSVRAPIYQVRGHASGM---RTL-PHGAAITTV 434 (458)
Q Consensus 374 -----~~~~~~~~~---~~~~~~v~~~~~s~-------~g~~l~~~~~~~~i~i~~~~~~~~~~---~~~-~h~~~v~~~ 434 (458)
..+.....+ ..+...+..+.|-. .|.+++..-..+.|....++....+. .+. .....+.++
T Consensus 232 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v 311 (331)
T PF07995_consen 232 PIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDV 311 (331)
T ss_dssp -ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEE
T ss_pred ccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEE
Confidence 000000000 11224455566653 44566665556788888876443221 112 344589999
Q ss_pred EECCCCCeEEEecCCCcEE
Q 012699 435 DWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~ 453 (458)
++.|||.++++-+.+|.|.
T Consensus 312 ~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEETTSEEEEEE-TTTTEE
T ss_pred EEcCCCeEEEEECCCCeEe
Confidence 9999999888888888874
No 463
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=5.4 Score=32.25 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=93.4
Q ss_pred CCeEEEEEcCC--CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 203 SDRLLLIGTAD--GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 203 ~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
++.++.+.+.- ..|++||+.+++.+....... ..+..--...-+.. .....+.+|.-..+|.++
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~------------~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDY------------FYQLTWKEGVAFKYDADT 120 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccce------------EEEEEeccceeEEEChHH
Confidence 55666666553 379999999998776544331 11111111111111 122233346888899998
Q ss_pred CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC--CC---CCeEEEEEcCCCCEEEEecC
Q 012699 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA--HD---SAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~ 355 (458)
.+.+..+..++.. ..++ .+++-|+.+.....++.-|.++.....+... .. ..++.+.| -+|...|-.=.
T Consensus 121 ~~~lg~~~y~GeG---WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~ 194 (262)
T COG3823 121 LEELGRFSYEGEG---WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQ 194 (262)
T ss_pred hhhhcccccCCcc---eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeee
Confidence 8888888765542 3343 3455566665555677767655433332221 11 12233444 24544443333
Q ss_pred CCeEEEEeccCCCeeEEeecCC---cccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 356 DGKIIEWSLQNQGQVLWTRNCS---RFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
+..|...+..+++...+..... .......+..-.+.+++.|++..++..+
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4445555555544433322111 1111122344577899999885554443
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.88 E-value=16 Score=37.22 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=80.4
Q ss_pred CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699 190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269 (458)
Q Consensus 190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
.+.+...++|+|.+...|+.....|...||++....... .....+.....
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~--------~~~~~~~~~~~---------------------- 193 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK--------SSNLRLSRNIS---------------------- 193 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccC--------CcceeeccCCC----------------------
Confidence 345788999999888899999999999999992211100 11111111111
Q ss_pred ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCC
Q 012699 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDE 347 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~ 347 (458)
|.| ++|.. .+ ..-..+.|.++...|++++ ...+.++|+++..... ........|..+.-+|..
T Consensus 194 -gsi-~~d~~-----------e~-s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~ 258 (765)
T PF10214_consen 194 -GSI-IFDPE-----------EL-SNWKRILWVSDSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDN 258 (765)
T ss_pred -ccc-cCCCc-----------cc-CcceeeEecCCCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCc
Confidence 233 12211 11 3456788988877888765 4569999998765522 122345678888888862
Q ss_pred -CEEEEecCCCeEEEEeccCC
Q 012699 348 -TSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 348 -~~l~~~~~dg~i~iwd~~~~ 367 (458)
.+++.-+ ...|...++...
T Consensus 259 ~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 259 PSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred cceEEEEe-cCeEEEEEccCC
Confidence 2333332 357888888763
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.70 E-value=6.4 Score=32.17 Aligned_cols=49 Identities=8% Similarity=0.211 Sum_probs=36.9
Q ss_pred CEEEEEecCCeEEEEeCCC--CceeeeeeCCCCCeEEEEEcCCCCEEEEecC
Q 012699 306 KILAASAVDGMIHMFDMSA--GLQITGWPAHDSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 355 (458)
+.|+.+.....|.+|++.+ .+.+.++.. -+.|..+.++..|++|+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 4555546678899999883 455666654 478999999999999998754
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.70 E-value=9.5 Score=34.14 Aligned_cols=63 Identities=8% Similarity=0.179 Sum_probs=33.7
Q ss_pred CCCEEEEEec-----CCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCCe----EEEEeccCC
Q 012699 304 NGKILAASAV-----DGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDGK----IIEWSLQNQ 367 (458)
Q Consensus 304 ~~~~l~~~~~-----dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~~ 367 (458)
+++..+.|+. ...+..||+.+.+... .+.. .......+...+++..+.|+.++. +..||..+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 4566666664 2368889987654332 1221 111122222345667777776543 457777654
No 467
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.61 E-value=6.6 Score=35.85 Aligned_cols=102 Identities=13% Similarity=0.199 Sum_probs=68.4
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe--ecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL--PLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
++|.++.|++|.+.++..-.+. .|.+++....+..... +.......|....|+.+ .-+|.-+..
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~-------------~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~ 132 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSK-------------TVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ 132 (657)
T ss_pred CceeEEEeccCcceEEEEecCc-------------eEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecC
Confidence 6899999999999999988874 9999987543333222 22233345888999876 445555544
Q ss_pred CeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 315 GMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 315 g~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
| +.+|.... .+.++..+.|...|.--.|.++.+.+.-+
T Consensus 133 G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 133 G-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred C-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 4 66776543 33455556677788888888877654433
No 468
>PLN02193 nitrile-specifier protein
Probab=91.49 E-value=13 Score=35.35 Aligned_cols=154 Identities=12% Similarity=0.109 Sum_probs=74.9
Q ss_pred CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
++.+++.|+.+ ..+..||+.+.+......... ........+..-++++++.++.+.... ...+..|
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~--------~~~~~~y 299 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATAR--------LKTLDSY 299 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCC--------cceEEEE
Confidence 56677777754 357889988876543222110 001111112223455666666542110 1367888
Q ss_pred ECCCCceeEEeecC---CCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeC---CC-CCeEEEEEcC
Q 012699 277 NMKTWKAMTVLPLG---EDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPA---HD-SAISSILFGP 345 (458)
Q Consensus 277 d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~---~~-~~v~~~~~~~ 345 (458)
|+.+.+-...-... ...... .++. -+++.++.++.+ ..+.+||+.+.+....-.. .. ....+++ .-
T Consensus 300 d~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~ 376 (470)
T PLN02193 300 NIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AV 376 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EE
Confidence 88775543221100 011111 1222 256677777655 4689999987654322110 11 1111222 23
Q ss_pred CCCEEEEecCC--------------CeEEEEeccCC
Q 012699 346 DETSIFSLGSD--------------GKIIEWSLQNQ 367 (458)
Q Consensus 346 ~~~~l~~~~~d--------------g~i~iwd~~~~ 367 (458)
++++++.|+.+ ..+.+||+.+.
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcC
Confidence 56677777753 24778887654
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.46 E-value=1.7 Score=39.38 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=96.0
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC----ceE-EEEEecCCCeEEEEEcCCCc
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT----EIM-SLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~~~~~dg~ 215 (458)
+.+..--.+|..+-..|||+.|+.-+. .++.++++.+.....+......++ .|. .+..- ..+.-++.+..||.
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL-~Gg~SLLv~~~dG~ 291 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLL-SGGFSLLVVHEDGL 291 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHH-hCceeEEEEcCCCc
Confidence 335555677888889999998876554 678899887665433222111111 122 11111 35667888999999
Q ss_pred EEEE-EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 216 IKAW-NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 216 i~~w-d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
|.-| |++.+... +..-+....+.|....++.....+ ..++.-..+|++.++.....+..-.- .-..
T Consensus 292 vsQWFdvr~~~~p-------~l~h~R~f~l~pa~~~~l~pe~~r---kgF~~l~~~G~L~~f~st~~~~lL~~---~~~~ 358 (733)
T COG4590 292 VSQWFDVRRDGQP-------HLNHIRNFKLAPAEVQFLLPETNR---KGFYSLYRNGTLQSFYSTSEKLLLFE---RAYQ 358 (733)
T ss_pred eeeeeeeecCCCC-------cceeeeccccCcccceeecccccc---ceEEEEcCCCceeeeecccCcceehh---hhhc
Confidence 9877 44432210 111233333333333333222221 11122222357777665443333221 1123
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
.+.-+++||++.++++- ..|.++++.+++..+..++
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPEISW 394 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCCCCCccH
Confidence 46778999999998874 4678999999876654443
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.31 E-value=12 Score=34.52 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=0.0
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR- 225 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~- 225 (458)
.+....+..++++.+++.+..-..++-|| .+..............+..+.|. +++..++++...+ .++....++
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~-~dg~l~l~g~~G~--l~~S~d~G~~ 312 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWR-ADGGLWLLTRGGG--LYVSKGTGLT 312 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEc-CCCCEEEEeCCce--EEEecCCCCc
Q ss_pred ----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee-cCCCCCcEEEEE
Q 012699 226 ----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LGEDPPAITSLC 300 (458)
Q Consensus 226 ----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~~~~~~i~~~~ 300 (458)
.............+.++.+.+++..++++.. -+.+.....++.-.... ...-......+.
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~---------------G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~ 377 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS---------------GILLRSTDGGKSWKRDKGADNIAANLYSVK 377 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEECC---------------CcEEEeCCCCcceeEccccCCCCcceeEEE
Q ss_pred EccCCCEEEEEecCCeEEEE
Q 012699 301 FNHNGKILAASAVDGMIHMF 320 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~ 320 (458)
|.++++.+++|. +|.|.-|
T Consensus 378 f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 378 FFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred EcCCCceEEEeC-CcEEEEe
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.14 E-value=1.5 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=27.7
Q ss_pred cCCCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEE
Q 012699 303 HNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILF 343 (458)
Q Consensus 303 ~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 343 (458)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677776655 4789999999988888877653 33334444
No 472
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.94 E-value=4.4 Score=32.31 Aligned_cols=28 Identities=7% Similarity=0.336 Sum_probs=24.2
Q ss_pred CcEEEEEECCCCC------eEEEecCCCcEEEEe
Q 012699 429 AAITTVDWHPTLP------MFLTGSADHSVQVMS 456 (458)
Q Consensus 429 ~~v~~~~~~~~~~------~l~s~~~dg~v~iw~ 456 (458)
..+.+++|||.|- +||+...+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 4899999999652 899999999999996
No 473
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.86 E-value=21 Score=36.57 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCCeEEEEeCCCC------CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEec--CC------CeEEEEEcC
Q 012699 147 TSPISCCRFSSSG------NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC--KS------DRLLLIGTA 212 (458)
Q Consensus 147 ~~~v~~~~~~~~~------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~------~~~l~~~~~ 212 (458)
+..|.|+++.++. ++++.++.|+++++..+.....+.......-+.++.++.+-+ .. .-+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4668899998864 579999999999999988555443333333344444444432 11 235667777
Q ss_pred CCcEEEE
Q 012699 213 DGGIKAW 219 (458)
Q Consensus 213 dg~i~~w 219 (458)
+|.+.-.
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765543
No 474
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.83 E-value=0.14 Score=49.87 Aligned_cols=139 Identities=8% Similarity=0.014 Sum_probs=79.6
Q ss_pred CCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 314 DGMIHMFDMSAGL-QITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 314 dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
.+.+++-+..+.- ....+++..+.+-.+.|.. +...+. -.-|.+.+||+.--.-.+.... .+.........+.-
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l--~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQL--EVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccce--EEeecCcCCCCcce
Confidence 4556776654422 1122355667777788733 222222 3346788998864211100000 00011112233344
Q ss_pred EEEcc---CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE-----------ECCCCCeEEEecCCCcEEEEeC
Q 012699 392 MALDV---NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD-----------WHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 392 ~~~s~---~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+.|.| +.-++..+-.++.+++...+.... .-+.+|...+++++ .||||..+|+++.||.++.|.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 55554 667777777888888887765533 22235776666655 4899999999999999999975
No 475
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.79 E-value=12 Score=33.59 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=87.2
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCc------EEEEecCCC--CCC-----CccccccC--------CCceEEEEEecCCCe
Q 012699 147 TSPISCCRFSSSGNNIASASVDGT------VRIWTYDSS--TPA-----SRNATIYC--------GTEIMSLEWECKSDR 205 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~--~~~-----~~~~~~~~--------~~~v~~~~~~~~~~~ 205 (458)
-+.+..+.+.|++..+++.+.+|. +...++... ... ........ .....++++ +.++.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence 355677888865556666666666 554444331 000 00000000 113447777 47888
Q ss_pred EEEEEcCC------CcEEEEEcCCCceeeeccCC-------------CCCCceeeeeecCCCCeEEEeecccCCCCcce-
Q 012699 206 LLLIGTAD------GGIKAWNVDAKRVVCDLNTT-------------DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNI- 265 (458)
Q Consensus 206 ~l~~~~~d------g~i~~wd~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~- 265 (458)
++++.-.+ ..|..++.. |+....+..+ ........++++|++..+++............
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88877777 788888876 5554443221 12245778999999996666655432111100
Q ss_pred --eeccceeEEEEECCC-CceeEE--eecCC-----CCCcEEEEEEccCCCEEEE
Q 012699 266 --YSWGFASLTVWNMKT-WKAMTV--LPLGE-----DPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 266 --~~~~~g~i~i~d~~~-~~~~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~ 310 (458)
.....-.|..||..+ ++.... +.+.. ....+..+.+-+++++|+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 011112445556655 323332 33332 3456888888888876664
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.71 E-value=5.5 Score=33.61 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=70.8
Q ss_pred EEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecC-C--CeEEEEeccC-CCeeEEeecCCcccCCCCCCCceeE
Q 012699 317 IHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGS-D--GKIIEWSLQN-QGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
-.+||+.+++... +.. ...-..+=.+-|||++|.+|+. + ..+++++..+ .....+... ...-....+-..
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~----~~~m~~~RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES----PNDMQSGRWYPT 122 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC----cccccCCCcccc
Confidence 4688988765432 222 1222233456789999999887 3 3477777544 111111111 111234455666
Q ss_pred EEEccCCCEEEEEeCCc-cEEEEEccCC-Ccccc--cCCC------CCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 392 MALDVNGRRLLVTSGSV-RAPIYQVRGH-ASGMR--TLPH------GAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~-~i~i~~~~~~-~~~~~--~~~h------~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
...-|||+.|++|+... ...+|.-... ..... +... ..-=--+...|+|++++.+..++.|.
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 77788999999998874 3344443211 11111 1110 00111345679999999888765443
No 477
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=90.53 E-value=9.9 Score=33.17 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=78.9
Q ss_pred EEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699 173 IWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 173 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
++|+.+++.+..-.... .+-.|+ ++++.++-+..|.+..+|.++|+........ +....+.|. |.+++
T Consensus 189 vidv~s~evl~~GLsmP-----hSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vp---G~~rGL~f~--G~llv 256 (335)
T TIGR03032 189 VIDIPSGEVVASGLSMP-----HSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLP---GFTRGLAFA--GDFAF 256 (335)
T ss_pred EEEeCCCCEEEcCccCC-----cCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECC---CCCccccee--CCEEE
Confidence 35666665442222222 233454 6788888888999999999888765544443 356788888 77776
Q ss_pred EeecccCCCCcc----e---eeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 253 SAAASRRYGSSN----I---YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 253 ~~~~~~~~~~~~----~---~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
++....+....+ + .....+.|.+.|++++..+..+.+++.-..+..++.-|+-
T Consensus 257 VgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 257 VGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred EEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 665443322110 1 0111268899999999999988888877788888888863
No 478
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=89.63 E-value=30 Score=36.51 Aligned_cols=281 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEeCC--CCCEE-----EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEE-EecCCCeEEEEEcCCCc
Q 012699 144 LGHTSPISCCRFSS--SGNNI-----ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE-WECKSDRLLLIGTADGG 215 (458)
Q Consensus 144 ~~h~~~v~~~~~~~--~~~~l-----~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~ 215 (458)
.||..+|.|....- ++..| +..+.||.+.|=|. ..+.+...-..-..|..+. -+|...-+++..--||+
T Consensus 344 dG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf---NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgt 420 (1899)
T KOG4659|consen 344 DGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF---NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGT 420 (1899)
T ss_pred CcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc---hheeeecCCCceEEEEEecCCCccceeEEEecCcCce
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
+.+=|..+.+....-........-..=....+|...+.+......+..... ..-..
T Consensus 421 lyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~d------------------------A~L~~ 476 (1899)
T KOG4659|consen 421 LYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQD------------------------AQLIF 476 (1899)
T ss_pred EEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhccc------------------------ceecc
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCC------------------CCceeeeeeCCCCCeEEEEEcC--------CCCE
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMS------------------AGLQITGWPAHDSAISSILFGP--------DETS 349 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~------------------~~~~~~~~~~~~~~v~~~~~~~--------~~~~ 349 (458)
...++|+.+|.+.++ ....|++.|.. -........-|-...+.++.+| |.+.
T Consensus 477 PkGIa~dk~g~lYfa--D~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv 554 (1899)
T KOG4659|consen 477 PKGIAFDKMGNLYFA--DGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV 554 (1899)
T ss_pred CCceeEccCCcEEEe--cccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce
Q ss_pred EEEecCCCeEEEEeccCCCeeEEe-ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEcc---------
Q 012699 350 IFSLGSDGKIIEWSLQNQGQVLWT-RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVR--------- 416 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~--------- 416 (458)
++-.+.++.|+|--=+........ .................+++++++|.+.++-+.. ++|+....+
T Consensus 555 vlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa 634 (1899)
T KOG4659|consen 555 VLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGA 634 (1899)
T ss_pred EEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCC
Q ss_pred ---------------CCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 417 ---------------GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 417 ---------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
+........+|-..+.+++.+|||...++-..+-.||
T Consensus 635 ~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 635 KSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred CCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.52 E-value=21 Score=35.31 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=54.2
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
..+.|-|+|..+++-+.|+.... -.+.++.... |+.-... +....+...+|+-....++++ ....
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S--------~~ViFfErNGLrHGef~lr~---~~dEk~~~~~wn~~s~vlav~-~~n~ 317 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTS--------ESVIFFERNGLRHGEFDLRV---GCDEKAFLENWNLLSTVLAVA-EGNL 317 (1243)
T ss_pred hccccccCCceeeeeccCCCCCc--------ceEEEEccCCcccCCccccC---CchhhhhhhhhhHHHHHHHHh-hcce
Confidence 34899999999998876542221 2555554332 2221111 112335566776655555553 4567
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcCCC
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDE 347 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 347 (458)
+.+|-..+-.........-..+.-+.|+|..
T Consensus 318 ~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 318 LKLWTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEccceEEEEEEeecCCCcceeeecccc
Confidence 9999876644333322233456678999954
No 480
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.10 E-value=7.3 Score=40.62 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=84.9
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEE--------ccCCCEEEEEecCCeEEEEeCCCCce---------eeeeeC
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCF--------NHNGKILAASAVDGMIHMFDMSAGLQ---------ITGWPA 333 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~ 333 (458)
+.+.+|+..++.....+..-. ..|..+.. -|.=+++++-..--.|.++-+.-.+. ..++..
T Consensus 99 n~L~lWny~~~~e~~~~d~~s--htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 99 NNLFLWNYESDNELAEYDGLS--HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred CeEEEEEcCCCCccccccchh--hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 499999999876666554222 33544432 22223444444445566665432111 122223
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec-CCc--------------ccCCC-CCCCceeEEEEccC
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN-CSR--------------FCDPE-SSKSCRHEMALDVN 397 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--------------~~~~~-~~~~~v~~~~~s~~ 397 (458)
....|+++....+|+.+++|- || .+|.+.-....-|... |.+ +.... .+..+|..++....
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 355788999888998777654 55 5666542222212111 111 12222 55678999999999
Q ss_pred CCEEEEEeCCccEEEEEccC
Q 012699 398 GRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 398 g~~l~~~~~~~~i~i~~~~~ 417 (458)
-..|++-++.+.|.+|++..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 99999999999999999976
No 481
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.63 E-value=8.4 Score=28.78 Aligned_cols=110 Identities=13% Similarity=0.173 Sum_probs=62.9
Q ss_pred EEecCCCeEEEEEcCCCcEEEEEcCCCc--------eeeeccCCCCCCceeeeeecC-----CCCeEEEeecccCCCCcc
Q 012699 198 EWECKSDRLLLIGTADGGIKAWNVDAKR--------VVCDLNTTDAFPSVLDLKCSP-----VEPIFVSAAASRRYGSSN 264 (458)
Q Consensus 198 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~ 264 (458)
.|. .....|++++.-|.|.+++..... .+..+... ..|++++-.+ ....|+.++..
T Consensus 5 kfD-G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin---~~italaaG~l~~~~~~D~LliGt~t------- 73 (136)
T PF14781_consen 5 KFD-GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN---QEITALAAGRLKPDDGRDCLLIGTQT------- 73 (136)
T ss_pred EeC-CCceeEEEEecCCEEEEECCCccccccccccCceeEEECC---CceEEEEEEecCCCCCcCEEEEeccc-------
Confidence 444 334467777888889998876432 22222222 2344443332 23455555554
Q ss_pred eeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc----CCCEEEEEecCCeEEEEeCCCCceee
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH----NGKILAASAVDGMIHMFDMSAGLQIT 329 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~ 329 (458)
.+..||+.....+... +-+..++++.+-. ...++++| .+..|.-||.+-.+...
T Consensus 74 -------~llaYDV~~N~d~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 74 -------SLLAYDVENNSDLFYK---EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFW 131 (136)
T ss_pred -------eEEEEEcccCchhhhh---hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEE
Confidence 9999999876655432 3345677777643 23455554 46678888866444443
No 482
>PRK13615 lipoprotein LpqB; Provisional
Probab=88.63 E-value=24 Score=34.10 Aligned_cols=151 Identities=9% Similarity=0.043 Sum_probs=89.2
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
.+++.++++..++....++.++++... +.....+. ...++.-.|.+++ .+.+.-.+...++......+..... .
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v-~- 410 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPV-A- 410 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEe-e-
Confidence 678999999998888777878887655 22222222 2346667788877 6666554444555554433332211 1
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeC---CccEEEEEccC-CCccccc-------CCCCCcEEEEEECCCCCeEEE
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSG---SVRAPIYQVRG-HASGMRT-------LPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---~~~i~i~~~~~-~~~~~~~-------~~h~~~v~~~~~~~~~~~l~s 445 (458)
..-.....|..+..|+||-.+++..+ .++|++--+.. ...+..+ ..-...+.++.|..++.+.+.
T Consensus 411 ----v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl 486 (557)
T PRK13615 411 ----VSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATL 486 (557)
T ss_pred ----ccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEE
Confidence 11123467999999999998887643 35566543322 2211122 112348999999999986555
Q ss_pred e---cCCCcEEEEeC
Q 012699 446 G---SADHSVQVMSL 457 (458)
Q Consensus 446 ~---~~dg~v~iw~l 457 (458)
+ +.+..+++-.+
T Consensus 487 ~~~~~~~~~v~~v~v 501 (557)
T PRK13615 487 TLAPDGERQVELHQV 501 (557)
T ss_pred eccCCCCceEEEEEC
Confidence 4 33345655544
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.24 E-value=20 Score=32.61 Aligned_cols=195 Identities=9% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcCC---CcEEEEEcCCCceeeecc
Q 012699 156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTAD---GGIKAWNVDAKRVVCDLN 231 (458)
Q Consensus 156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~ 231 (458)
.|...+++....++-+.+||+..........-.... .-...+.+.-..-.++++...+ ..|++|.+.......+.-
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Q ss_pred CC------CCCCceeeeeec---CCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCCCc
Q 012699 232 TT------DAFPSVLDLKCS---PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDPPA 295 (458)
Q Consensus 232 ~~------~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~~~ 295 (458)
.. .....++.+++. .++...+...... |.+..|.+.. .+.++.|.....
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~------------G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ--- 209 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKD------------GRVEQYELTDDGDGKVSATLVREFKVGSQ--- 209 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETT------------SEEEEEEEEE-TTSSEEEEEEEEEE-SS----
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCC------------ceEEEEEEEeCCCCcEeeEEEEEecCCCc---
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCCC-----CceeeeeeC--CCCCeEEEEEcC----CCCEEEEecCCCeEEEEec
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMSA-----GLQITGWPA--HDSAISSILFGP----DETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-----~~~~~~~~~--~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~ 364 (458)
+..++......+|+.|-++.-|.-|+.+. ++.+....+ ....|-.|++-. .|-+|++.-.+++..+|+.
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Q ss_pred c
Q 012699 365 Q 365 (458)
Q Consensus 365 ~ 365 (458)
.
T Consensus 290 ~ 290 (381)
T PF02333_consen 290 E 290 (381)
T ss_dssp S
T ss_pred C
No 484
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.04 E-value=13 Score=30.40 Aligned_cols=145 Identities=11% Similarity=0.180 Sum_probs=80.4
Q ss_pred eEEEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE---ECC
Q 012699 205 RLLLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW---NMK 279 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~---d~~ 279 (458)
+.|+.+.....|.+|++. ..+....+.+- +.|..+.++..|+++++--........ ..+++| +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~-------~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPV-------DFVRAYFNWRSQ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccc-------eEEEEEEEhhhh
Confidence 455555667789999988 33455566555 579999999999999998766532200 133443 111
Q ss_pred --C---------------------CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-ee-----e
Q 012699 280 --T---------------------WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-IT-----G 330 (458)
Q Consensus 280 --~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~-----~ 330 (458)
. +.....+.++- ...+.+++-.|-..-|++|+ ++.+.+|.+..... .. .
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 0 11122222221 24567788888544455555 55788988754322 11 1
Q ss_pred ee----CC-C-CCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 331 WP----AH-D-SAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 331 ~~----~~-~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
+. .| . -....+++. +.++|..+. -.+++..+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 11 11 1 123445554 457776654 46666654
No 485
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.01 E-value=37 Score=35.51 Aligned_cols=177 Identities=15% Similarity=0.186 Sum_probs=100.4
Q ss_pred eccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---------CCCEEEEEec---------CCeEEEEeCCC----
Q 012699 267 SWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---------NGKILAASAV---------DGMIHMFDMSA---- 324 (458)
Q Consensus 267 ~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~l~~~~~---------dg~i~v~d~~~---- 324 (458)
......|.+....+++.+..+.+... .-+.++.... ...||++|.. .|.+.+||+-.
T Consensus 1000 ~~~~f~i~LisP~sw~vi~~iefq~~-E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 1000 EGEQFSIQLISPESWEVIDKIEFQEN-EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred ccccceeEEecCCccccccccccCcc-ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 34446888888888888877665433 2345544431 1247888753 48899999732
Q ss_pred -Cceeeee-------eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 325 -GLQITGW-------PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 325 -~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
+++.... +.-.++|..++= -+| +|+++ ...+|.+|++.....+....- ..-++.......
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~l~r~~~ligVaF---------iD~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRKLDRDSELIGVAF---------IDLPLYVHSMKV 1146 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEEeccCCcceeeEE---------eccceeEEehhh
Confidence 3332211 234567766653 456 44444 345799999954433321110 111122233333
Q ss_pred CCCEEEEEeCCccEEEEEccCCCcccccCC---CCCcEEEEEECCCCC--eEEEecCCCcEEEEe
Q 012699 397 NGRRLLVTSGSVRAPIYQVRGHASGMRTLP---HGAAITTVDWHPTLP--MFLTGSADHSVQVMS 456 (458)
Q Consensus 397 ~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~--~l~s~~~dg~v~iw~ 456 (458)
-+++|+.|.--..|.+...........+.. ..-.+.++.|--||. .++.+..|++|+++-
T Consensus 1147 vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence 445666665555566665554332222222 234678888877776 778889999999874
No 486
>PLN02193 nitrile-specifier protein
Probab=87.60 E-value=26 Score=33.33 Aligned_cols=154 Identities=7% Similarity=0.080 Sum_probs=73.2
Q ss_pred CCeEEEEEcCC-------CcEEEEEcCCCceeeeccCCCCCC--ceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 203 SDRLLLIGTAD-------GGIKAWNVDAKRVVCDLNTTDAFP--SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 203 ~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
++.+++.|+.+ ..+.+||+.+.+....-....... ........-++.+++.++.+... ....+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~--------~~ndv 246 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR--------QYNGF 246 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC--------CCccE
Confidence 45666666643 247788888766442111111101 01111222345566666544210 11378
Q ss_pred EEEECCCCceeEEeecC--CCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeeeee-----CCCCCeEEE
Q 012699 274 TVWNMKTWKAMTVLPLG--EDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITGWP-----AHDSAISSI 341 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~-----~~~~~v~~~ 341 (458)
..||+.+.+....-... ..+..-.+++. -++++.+.|+.++ .+..||+.+.+....-. ........+
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence 88999876544322211 11111122222 2456666666543 46788887654322110 111111122
Q ss_pred EEcCCCCEEEEecCC----CeEEEEeccCC
Q 012699 342 LFGPDETSIFSLGSD----GKIIEWSLQNQ 367 (458)
Q Consensus 342 ~~~~~~~~l~~~~~d----g~i~iwd~~~~ 367 (458)
. -+++.++.++.+ ..+.+||+.+.
T Consensus 326 ~--~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 326 V--VQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred E--ECCcEEEEECCCCCccCceEEEECCCC
Confidence 2 256677777655 45888888765
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.54 E-value=2.4 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=19.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEecC-C--CeEEEE
Q 012699 333 AHDSAISSILFGPDETSIFSLGS-D--GKIIEW 362 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iw 362 (458)
.....-....|+|||++|+-++. + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556778999999998876654 4 555554
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.26 E-value=9.5 Score=30.40 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=26.1
Q ss_pred CCceeEEEEccCC------CEEEEEeCCccEEEEEccC
Q 012699 386 KSCRHEMALDVNG------RRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 386 ~~~v~~~~~s~~g------~~l~~~~~~~~i~i~~~~~ 417 (458)
...+..++|||.| -+|++-+.++.+.||....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3478999999954 3788889999999998764
No 489
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.19 E-value=22 Score=31.86 Aligned_cols=115 Identities=8% Similarity=0.119 Sum_probs=55.5
Q ss_pred CCeEEEEEcCCC-----cEEEEEcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 203 SDRLLLIGTADG-----GIKAWNVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 203 ~~~~l~~~~~dg-----~i~~wd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
++.+++.|+.++ .+..||+.+.+.. ..+..... ......+..-++.+.+.++..... ....+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~-~~~~~~~~~~~~~iYv~GG~~~~~--------~~~~v~ 142 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF-TFENGSACYKDGTLYVGGGNRNGK--------PSNKSY 142 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc-CccCceEEEECCEEEEEeCcCCCc--------cCceEE
Confidence 456777777543 5667777766531 11111110 111111222345566666542110 013788
Q ss_pred EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC----eEEEEeCCCCce
Q 012699 275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG----MIHMFDMSAGLQ 327 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~ 327 (458)
.||+.+.+-...-.+.... .....+...++++.+.|+.++ .+.+||..+.+.
T Consensus 143 ~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 143 LFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred EEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 9998875543322222111 112222234566777777653 356889876543
No 490
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=86.89 E-value=29 Score=33.11 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCC------cEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE
Q 012699 203 SDRLLLIGTADG------GIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV 275 (458)
Q Consensus 203 ~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i 275 (458)
+..+++.|+.+. .+..+|+.+.+......... ........+..-+..+++.|+.+.... ....+.+
T Consensus 122 ~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~-------~~ndl~i 194 (482)
T KOG0379|consen 122 GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD-------SLNDLHI 194 (482)
T ss_pred CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc-------ceeeeee
Confidence 467777788775 78999999887655444333 222223333333455666666654322 2258999
Q ss_pred EECCCCceeEEeecCCCCC--cEEEEEEccCCCEEEEEecC------CeEEEEeCCCCcee
Q 012699 276 WNMKTWKAMTVLPLGEDPP--AITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQI 328 (458)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~ 328 (458)
+|+.+.+-.........+. .-..++.. ..++++.++.+ +.+.++|+.+.+..
T Consensus 195 ~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 195 YDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred eccccccceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeecccceee
Confidence 9998876444332222111 12223322 35566666665 25777888774433
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=86.72 E-value=31 Score=33.23 Aligned_cols=261 Identities=12% Similarity=0.141 Sum_probs=113.3
Q ss_pred cCCCceeeeeecCcceEEeccccccccccceeeee-ccCCceeeeeCCccceeEeeccCCCcccccccccccCCccccee
Q 012699 34 QTKNSTLASGVNEESLLLSTNSSEACATTATHMGS-AEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQ 112 (458)
Q Consensus 34 s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (458)
..++..++-+..+|.+....+......-.+..++. .+-..-+.....+ +.+++.|+.-|.-.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g-~d~lf~gs~~gds~l~~~~~---------- 287 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNG-GDYLFVGSEFGDSQLLQISL---------- 287 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT---EEEEEESSS-EEEEEEES----------
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCC-CEEEEEEEecCCcEEEEEeC----------
Confidence 66777788888899888877665442101222222 2222223333333 45777777665555544431
Q ss_pred eeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC----CC------EEEEEe---CCCcEEEEecCCC
Q 012699 113 MFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS----GN------NIASAS---VDGTVRIWTYDSS 179 (458)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~------~l~s~~---~dg~v~iwd~~~~ 179 (458)
..++.+..+. .-+||..+++.+. .. .|++++ .+|.+++..-.-+
T Consensus 288 ----------------------~~l~~~~~~~-N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~ 344 (504)
T PF10433_consen 288 ----------------------SNLEVLDSLP-NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG 344 (504)
T ss_dssp ----------------------ESEEEEEEE-----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE
T ss_pred ----------------------CCcEEEEecc-CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC
Confidence 0111222232 3466777766421 11 455543 5678888642111
Q ss_pred CCCCcccccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 180 TPASRNATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 180 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
-......... .-..++.+.....+..+++.+..+ .-+++.+. ..+.+...... .|..+.+.++++
T Consensus 345 ~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~---------~f~~~~~Tl~~~ 414 (504)
T PF10433_consen 345 IEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEED---------GFDTDEPTLAAG 414 (504)
T ss_dssp EE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE------------TS-SSS-EEEEE
T ss_pred ceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhc---------cCCCCCCCeEEE
Confidence 0000111111 122344444332224566665554 34455543 22222111100 122223333332
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-- 332 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-- 332 (458)
.-. ...+...-...|++.+....+........ ....|.+.+.+ +.+++.+..++.+..+.+..........
T Consensus 415 ~~~----~~~ivQVt~~~i~l~~~~~~~~~~~w~~~-~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 487 (504)
T PF10433_consen 415 NVG----DGRIVQVTPKGIRLIDLEDGKLTQEWKPP-AGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDE 487 (504)
T ss_dssp EET----TTEEEEEESSEEEEEESSSTSEEEEEE-T-TS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE--
T ss_pred EcC----CCeEEEEecCeEEEEECCCCeEEEEEeCC-CCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeecc
Confidence 221 00111111137899998877777665443 33446555554 4567777778899999887655432222
Q ss_pred ---CCCCCeEEEEEcC
Q 012699 333 ---AHDSAISSILFGP 345 (458)
Q Consensus 333 ---~~~~~v~~~~~~~ 345 (458)
.....|.|+...|
T Consensus 488 ~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 488 TILELDNEISCLSIEP 503 (504)
T ss_dssp --EE-SS-EEEEE---
T ss_pred ccccCCCceEEEEeCC
Confidence 1467788888766
No 492
>PRK05560 DNA gyrase subunit A; Validated
Probab=86.63 E-value=41 Score=34.54 Aligned_cols=243 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCCCcEEEEEc-------CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 202 KSDRLLLIGTADGGIKAWNV-------DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
++...++.-+.+|.|+--.+ ..+.-...+...........+..+.....++..+..+ .++
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Gr-------------v~~ 562 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGR-------------VYR 562 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCe-------------EEE
Q ss_pred E--EECCCCc-------eeEEeecCCCCCcEEEEEEc--cCCCEEEEEecCCeEEEEeC-------CCCceeeeeeCCCC
Q 012699 275 V--WNMKTWK-------AMTVLPLGEDPPAITSLCFN--HNGKILAASAVDGMIHMFDM-------SAGLQITGWPAHDS 336 (458)
Q Consensus 275 i--~d~~~~~-------~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~v~d~-------~~~~~~~~~~~~~~ 336 (458)
+ +++.... ....+.+.....-+..+.+. ++..+++..+.+|.++--++ +.+.....+. -.+
T Consensus 563 l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLk-e~D 641 (805)
T PRK05560 563 LKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLD-EGD 641 (805)
T ss_pred EEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccC-CCC
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
.+..+........++..+..|.+..+.+..-....................-+..+.+.++..+++..+..|.++...+.
T Consensus 642 ~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~ 721 (805)
T PRK05560 642 ELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS 721 (805)
T ss_pred EEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH
Q ss_pred ---------CCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 417 ---------GHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 417 ---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+.....+....+.+..+........++..+.+|.+..++++
T Consensus 722 e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 722 EYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred HhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.49 E-value=3.4 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=19.3
Q ss_pred cCCCCeEEEEeCCCCCEEEEEe-CC--CcEEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASAS-VD--GTVRIW 174 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~-~d--g~v~iw 174 (458)
...+.-....|+|||+.|+-++ .+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455677889999999876654 34 555555
No 494
>PLN02153 epithiospecifier protein
Probab=86.07 E-value=26 Score=31.67 Aligned_cols=116 Identities=9% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCeEEEEEcCC-------CcEEEEEcCCCceeeeccCCCCCC-ce-eeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 203 SDRLLLIGTAD-------GGIKAWNVDAKRVVCDLNTTDAFP-SV-LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 203 ~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
++.+++.|+.+ ..+.+||+.+.+-........... .. ......-++.+++.++.+... ....+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--------~~~~v 103 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--------EFSDF 103 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--------ccCcE
Confidence 34555555542 257788887765432211111000 00 111122245566666654211 01368
Q ss_pred EEEECCCCceeEEeecC----CCCCcEEEEEEccCCCEEEEEecC-----------CeEEEEeCCCCce
Q 012699 274 TVWNMKTWKAMTVLPLG----EDPPAITSLCFNHNGKILAASAVD-----------GMIHMFDMSAGLQ 327 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~v~d~~~~~~ 327 (458)
.+||+.+.+-...-.+. .....-.+++ .-+++.++.|+.+ ..+.+||..+.+-
T Consensus 104 ~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 104 YSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred EEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 88998875543321111 1111112222 2345666666643 2477889876543
No 495
>PLN02153 epithiospecifier protein
Probab=85.54 E-value=27 Score=31.50 Aligned_cols=123 Identities=14% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEE
Q 012699 203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLT 274 (458)
Q Consensus 203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 274 (458)
++.+++.|+.+ ..+.+||+.+.+-...-.... ........+..-++++++.++.+...... .......+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK--TPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC--CCcccceEE
Confidence 56677777753 257789988766433211100 11112222233445666666654210000 000013678
Q ss_pred EEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEecC-------------CeEEEEeCCCCcee
Q 012699 275 VWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAVD-------------GMIHMFDMSAGLQI 328 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-------------g~i~v~d~~~~~~~ 328 (458)
+||+++.+-...-.... ....-.+++. -++++++.|+.+ ..+.+||+.+.+..
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 89988755433211110 1111112222 255555555432 35888998876543
No 496
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=85.53 E-value=30 Score=31.84 Aligned_cols=241 Identities=7% Similarity=-0.008 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----------cEEEEEcCCCceeee
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG-----------GIKAWNVDAKRVVCD 229 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~i~~wd~~~~~~~~~ 229 (458)
+++.|..+..+.++|+................+-........++.+.+.|+.+. .+..||..+++....
T Consensus 42 yv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~ 121 (376)
T PRK14131 42 YVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL 121 (376)
T ss_pred EEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeC
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecc---------------------------------------cCCCCcceeeccc
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAAS---------------------------------------RRYGSSNIYSWGF 270 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~ 270 (458)
-........-......-++.+.+.|+.+ .
T Consensus 122 ~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------ 189 (376)
T PRK14131 122 DTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNK------------ 189 (376)
T ss_pred CCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCc------------
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE-----ecCCeEEEEeC----CCCceeeeeeC------CC
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS-----AVDGMIHMFDM----SAGLQITGWPA------HD 335 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~v~d~----~~~~~~~~~~~------~~ 335 (458)
.+.+||..+.+-...-.+......-.+++...+.-+++-| .....++.+++ .....+..++. +.
T Consensus 190 -~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 190 -EVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred -eEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Q ss_pred CCeEEEEEcCCCCEEEEecCC----------------------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 336 SAISSILFGPDETSIFSLGSD----------------------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 336 ~~v~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
......+...++++++.|+.+ ..+.+||..+. .................+.
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~-------~W~~~~~lp~~r~~~~av~ 341 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG-------KWQKVGELPQGLAYGVSVS 341 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC-------cccccCcCCCCccceEEEE
Q ss_pred EccCCCEEEEEeCCc------cEEEEEccCCCcccc
Q 012699 394 LDVNGRRLLVTSGSV------RAPIYQVRGHASGMR 423 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~------~i~i~~~~~~~~~~~ 423 (458)
+ ++++++.|+... .|..+..+.......
T Consensus 342 ~--~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~~ 375 (376)
T PRK14131 342 W--NNGVLLIGGETAGGKAVSDVTLLSWDGKKLTVE 375 (376)
T ss_pred e--CCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEEe
No 497
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=85.52 E-value=45 Score=34.00 Aligned_cols=69 Identities=9% Similarity=-0.069 Sum_probs=51.7
Q ss_pred CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc----C---------------CCCCcEEEEEECCCCCeEEE
Q 012699 385 SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT----L---------------PHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 385 ~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~----~---------------~h~~~v~~~~~~~~~~~l~s 445 (458)
....|.++....-+.+++.+..||+|.++|-.+.+.+... . ++...+..++|||.+..++.
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 3456777888888889999999999999998776443332 1 12234556899999999998
Q ss_pred ecCCCcEE
Q 012699 446 GSADHSVQ 453 (458)
Q Consensus 446 ~~~dg~v~ 453 (458)
-..||.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 88888855
No 498
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=84.58 E-value=52 Score=33.82 Aligned_cols=160 Identities=7% Similarity=0.021 Sum_probs=78.7
Q ss_pred cEEEEEEc--cCCCEEEEEecCCeEEEEeCCCCc-------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 295 AITSLCFN--HNGKILAASAVDGMIHMFDMSAGL-------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 295 ~i~~~~~~--~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
-+.++... .+..+++..+.+|.++-.++..-. ....+.. .+.+..+........++..+..|.+..+.+.
T Consensus 590 Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~ 668 (800)
T TIGR01063 590 ITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDEVMLGSKNGKAVRFPEE 668 (800)
T ss_pred EEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCEEEEEECCCcEEEEEhh
Confidence 34455543 245678888999999988765421 1122233 3344444443444566667777877666654
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-------c--cccCCCCCcEEEEEE
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-------G--MRTLPHGAAITTVDW 436 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-------~--~~~~~h~~~v~~~~~ 436 (458)
.-...-........... .....|..+..-.+...++..+..|.++...+..-.. . ..+....+.+..+..
T Consensus 669 eIp~~gr~~~Gv~~i~L-~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~~ikl~~~~d~lv~~~~ 747 (800)
T TIGR01063 669 DVRPMGRAARGVRGIKL-KNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVKSIKITDRNGQVVGAIA 747 (800)
T ss_pred hcCCcCCCCCCeecccC-CCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceEEEEccCCCCeEEEEEE
Confidence 32111000000011111 1223344444444556788888888877776542211 1 111122234444433
Q ss_pred CCCCCeEEEecCCCcEEEEe
Q 012699 437 HPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 437 ~~~~~~l~s~~~dg~v~iw~ 456 (458)
..+...++..+.+|.+..+.
T Consensus 748 v~~~~~v~liT~~G~~lrf~ 767 (800)
T TIGR01063 748 VDDDDELMLITSAGKLIRTS 767 (800)
T ss_pred ecCCCeEEEEecCCeEEEee
Confidence 33334455556677665554
No 499
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=83.99 E-value=34 Score=31.25 Aligned_cols=170 Identities=8% Similarity=-0.037 Sum_probs=84.8
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC--CCCE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP--DETS 349 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 349 (458)
.+.++|-. ....-.++.-+...+|.++.|..|--++++=-.-.-+.+.|+.+.+.-+.+-.-.-+=.+--.+| .+..
T Consensus 407 ~vYilDe~-lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~ 485 (603)
T COG4880 407 AVYILDEN-LNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL 485 (603)
T ss_pred eeEEEcCC-CcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence 44454432 23333443334446788888887766777765555688888877544332211111112223455 4556
Q ss_pred EEEecCCCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE-EeCCccEEEEEccCCCcccccCC
Q 012699 350 IFSLGSDGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV-TSGSVRAPIYQVRGHASGMRTLP 426 (458)
Q Consensus 350 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~~~~~i~i~~~~~~~~~~~~~~ 426 (458)
|-.|..+|. |.++|+.+...+..........--...-..-+++.|.|.-..++. +...|. |+.++.+.++.....
T Consensus 486 lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~~e 563 (603)
T COG4880 486 LGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKRAE 563 (603)
T ss_pred EEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCccE--EEEEecCceeeehhh
Confidence 777777776 567888765443321110000000000011233445555444433 333343 566665555555556
Q ss_pred CCCcEEEEEECCCCCeEE
Q 012699 427 HGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 427 h~~~v~~~~~~~~~~~l~ 444 (458)
|...+...-|..|--+++
T Consensus 564 ~k~na~RA~fi~dylY~v 581 (603)
T COG4880 564 RKLNADRAFFIKDYLYLV 581 (603)
T ss_pred hcccceeeEEecceEEEe
Confidence 776666666665533333
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.93 E-value=26 Score=30.45 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=63.6
Q ss_pred CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec------CCCeEEEEeccCCCeeEEeecCCcccC-C-CCCC
Q 012699 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG------SDGKIIEWSLQNQGQVLWTRNCSRFCD-P-ESSK 386 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~ 386 (458)
..|++||..+.+...--.+-.+.|+.+.|..+.+.++.|. ....+..||+.+..-. .+.. . ....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-------~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-------SLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-------ecCCcccccCC
Confidence 3589999887666554445567899999986666666553 3556889998865211 1111 0 2234
Q ss_pred CceeEEEEcc-CC-CEEEEEe-CCcc--EEEEEccCCCcccc-cCCCCCcEEEEEEC
Q 012699 387 SCRHEMALDV-NG-RRLLVTS-GSVR--APIYQVRGHASGMR-TLPHGAAITTVDWH 437 (458)
Q Consensus 387 ~~v~~~~~s~-~g-~~l~~~~-~~~~--i~i~~~~~~~~~~~-~~~h~~~v~~~~~~ 437 (458)
.++..+.+.. |+ ++.+.|. .++. +..||-.....+.. .......|.++.+-
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 5677776643 33 3444443 3333 55554433322222 22233456665543
Done!