Query 012699
Match_columns 458
No_of_seqs 779 out of 2592
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 14:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 5.4E-58 1.8E-62 444.6 48.0 419 15-458 50-610 (611)
2 1nr0_A Actin interacting prote 100.0 8.5E-56 2.9E-60 429.2 45.5 408 20-458 14-566 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 8.1E-54 2.8E-58 414.4 47.5 408 15-458 48-538 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1.5E-53 5E-58 412.6 44.0 399 17-456 173-577 (577)
5 2oaj_A Protein SNI1; WD40 repe 100.0 4.8E-50 1.6E-54 402.3 39.3 429 19-457 12-659 (902)
6 3ow8_A WD repeat-containing pr 100.0 2.9E-49 1E-53 352.1 39.9 293 139-458 24-320 (321)
7 1pgu_A Actin interacting prote 100.0 3.3E-48 1.1E-52 378.1 44.3 410 15-458 54-613 (615)
8 1vyh_C Platelet-activating fac 100.0 2.8E-48 9.4E-53 358.2 41.3 289 140-457 101-409 (410)
9 1got_B GT-beta; complex (GTP-b 100.0 3.2E-48 1.1E-52 349.0 39.7 291 138-456 46-340 (340)
10 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-48 4.5E-53 409.9 42.5 419 19-458 610-1157(1249)
11 3sfz_A APAF-1, apoptotic pepti 100.0 4.4E-49 1.5E-53 413.6 38.0 436 15-458 648-1248(1249)
12 2pbi_B Guanine nucleotide-bind 100.0 3.3E-47 1.1E-51 343.8 40.5 292 138-456 55-354 (354)
13 1pgu_A Actin interacting prote 100.0 3.8E-47 1.3E-51 370.6 43.8 415 20-458 14-571 (615)
14 3iz6_a 40S ribosomal protein R 100.0 4.1E-47 1.4E-51 347.0 35.3 301 138-458 57-374 (380)
15 1vyh_C Platelet-activating fac 100.0 2.3E-46 8E-51 345.3 38.9 290 17-416 101-410 (410)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.8E-46 1.7E-50 335.3 39.2 305 138-458 6-334 (345)
17 3ow8_A WD repeat-containing pr 100.0 4.4E-46 1.5E-50 331.6 38.1 294 15-416 23-320 (321)
18 2xzm_R RACK1; ribosome, transl 100.0 2.8E-45 9.4E-50 330.4 41.5 296 135-457 9-338 (343)
19 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-46 8.7E-51 375.3 37.9 410 21-458 55-731 (902)
20 4gqb_B Methylosome protein 50; 100.0 1.6E-45 5.5E-50 330.3 37.3 206 145-367 80-290 (344)
21 3frx_A Guanine nucleotide-bind 100.0 6.1E-45 2.1E-49 324.4 39.8 291 137-457 7-315 (319)
22 3iz6_a 40S ribosomal protein R 100.0 2.2E-45 7.4E-50 335.6 37.5 302 18-420 60-378 (380)
23 2ynn_A Coatomer subunit beta'; 100.0 5.7E-45 1.9E-49 322.4 38.3 291 138-457 4-300 (304)
24 4g56_B MGC81050 protein; prote 100.0 2.2E-45 7.4E-50 332.2 36.2 288 144-458 39-342 (357)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-45 5E-50 332.2 34.3 315 15-423 6-341 (345)
26 1r5m_A SIR4-interacting protei 100.0 7E-45 2.4E-49 338.2 39.4 347 17-458 36-424 (425)
27 4ery_A WD repeat-containing pr 100.0 3E-44 1E-48 319.6 41.7 294 139-458 15-311 (312)
28 1gxr_A ESG1, transducin-like e 100.0 2.4E-44 8.3E-49 324.0 40.7 285 144-457 48-335 (337)
29 1got_B GT-beta; complex (GTP-b 100.0 5.5E-45 1.9E-49 327.9 36.3 292 18-363 49-340 (340)
30 2pbi_B Guanine nucleotide-bind 100.0 6.1E-45 2.1E-49 329.0 36.0 296 18-363 58-354 (354)
31 2hes_X YDR267CP; beta-propelle 100.0 1.2E-44 4.1E-49 324.1 37.2 299 138-458 5-327 (330)
32 4g56_B MGC81050 protein; prote 100.0 5.5E-45 1.9E-49 329.5 35.3 305 19-421 37-347 (357)
33 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-44 6.3E-49 363.0 41.1 379 16-456 5-420 (814)
34 2pm9_A Protein WEB1, protein t 100.0 1.6E-45 5.5E-50 341.7 30.0 375 23-458 11-413 (416)
35 2ynn_A Coatomer subunit beta'; 100.0 7.1E-44 2.4E-48 315.4 38.4 292 16-417 5-302 (304)
36 3frx_A Guanine nucleotide-bind 100.0 2.4E-43 8.4E-48 314.1 40.5 303 16-418 9-318 (319)
37 1erj_A Transcriptional repress 100.0 8E-44 2.7E-48 326.8 38.4 293 145-457 62-387 (393)
38 2xzm_R RACK1; ribosome, transl 100.0 7.3E-43 2.5E-47 314.6 39.6 309 16-418 13-341 (343)
39 4aow_A Guanine nucleotide-bind 100.0 2E-42 6.8E-47 311.9 41.8 293 138-458 29-336 (340)
40 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-44 3.9E-49 340.4 28.1 321 81-458 171-516 (524)
41 3vl1_A 26S proteasome regulato 100.0 9.9E-43 3.4E-47 323.3 36.0 333 27-417 59-419 (420)
42 3zwl_B Eukaryotic translation 100.0 8.2E-42 2.8E-46 311.4 41.3 296 139-458 24-345 (369)
43 3ei3_B DNA damage-binding prot 100.0 2.8E-42 9.5E-47 316.2 37.7 301 138-458 64-381 (383)
44 4aow_A Guanine nucleotide-bind 100.0 4.6E-42 1.6E-46 309.5 37.7 307 16-419 30-339 (340)
45 3gre_A Serine/threonine-protei 100.0 4.8E-43 1.6E-47 327.1 32.1 323 118-456 34-437 (437)
46 4ery_A WD repeat-containing pr 100.0 3.6E-41 1.2E-45 299.8 41.9 291 17-416 16-311 (312)
47 2hes_X YDR267CP; beta-propelle 100.0 5E-42 1.7E-46 307.2 36.0 298 16-417 6-328 (330)
48 4e54_B DNA damage-binding prot 100.0 1.6E-42 5.5E-47 322.7 32.0 299 140-458 112-429 (435)
49 3dm0_A Maltose-binding peripla 100.0 1.3E-41 4.5E-46 335.2 39.6 294 138-458 373-692 (694)
50 1sq9_A Antiviral protein SKI8; 100.0 5.6E-42 1.9E-46 315.8 34.6 304 138-458 7-394 (397)
51 1erj_A Transcriptional repress 100.0 1.2E-41 4.3E-46 312.2 35.7 294 21-366 61-389 (393)
52 1k8k_C P40, ARP2/3 complex 41 100.0 2.5E-41 8.6E-46 308.7 37.4 290 143-457 4-359 (372)
53 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.8E-41 3.4E-45 312.0 41.3 322 16-458 110-441 (445)
54 3v7d_B Cell division control p 100.0 1.5E-40 5.1E-45 312.7 42.4 323 17-456 114-460 (464)
55 3vl1_A 26S proteasome regulato 100.0 6.9E-42 2.4E-46 317.7 30.6 321 77-458 62-418 (420)
56 3k26_A Polycomb protein EED; W 100.0 1.4E-41 4.7E-46 309.6 31.1 300 142-458 13-365 (366)
57 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-41 1.6E-45 338.1 33.8 364 15-458 46-459 (814)
58 4a11_B DNA excision repair pro 100.0 5.3E-40 1.8E-44 303.7 37.6 298 139-458 35-364 (408)
59 3i2n_A WD repeat-containing pr 100.0 5.7E-41 1.9E-45 304.5 30.5 298 140-458 11-352 (357)
60 3dwl_C Actin-related protein 2 100.0 1.6E-41 5.5E-46 310.5 26.6 335 20-457 7-377 (377)
61 2pm7_B Protein transport prote 100.0 5.3E-40 1.8E-44 289.6 33.2 258 141-417 3-285 (297)
62 3dm0_A Maltose-binding peripla 100.0 1E-39 3.5E-44 321.7 38.7 303 18-416 376-692 (694)
63 1gxr_A ESG1, transducin-like e 100.0 7.4E-39 2.5E-43 288.1 40.9 291 19-416 46-336 (337)
64 3zwl_B Eukaryotic translation 100.0 4E-39 1.4E-43 293.6 39.2 293 17-419 25-348 (369)
65 2pm9_A Protein WEB1, protein t 100.0 7.6E-41 2.6E-45 310.2 28.1 288 147-458 12-336 (416)
66 4h5i_A Guanine nucleotide-exch 100.0 9.4E-40 3.2E-44 296.0 34.5 289 147-458 14-342 (365)
67 3odt_A Protein DOA1; ubiquitin 100.0 7.3E-39 2.5E-43 285.1 37.6 282 138-458 9-295 (313)
68 1k8k_C P40, ARP2/3 complex 41 100.0 3.7E-39 1.2E-43 294.3 35.9 305 19-420 3-364 (372)
69 4gqb_B Methylosome protein 50; 100.0 1.6E-39 5.5E-44 291.3 32.6 208 142-367 122-332 (344)
70 3ei3_B DNA damage-binding prot 100.0 2.1E-39 7.2E-44 297.0 32.9 293 16-417 65-382 (383)
71 4h5i_A Guanine nucleotide-exch 100.0 1.8E-39 6.2E-44 294.2 29.7 303 25-367 15-344 (365)
72 4aez_A CDC20, WD repeat-contai 100.0 1.2E-38 4.2E-43 293.5 34.6 284 142-458 86-379 (401)
73 1r5m_A SIR4-interacting protei 100.0 1.5E-38 5.1E-43 295.6 35.0 284 144-457 42-359 (425)
74 1sq9_A Antiviral protein SKI8; 100.0 8.9E-39 3E-43 294.4 32.3 306 17-367 9-396 (397)
75 4gga_A P55CDC, cell division c 100.0 5.9E-38 2E-42 290.6 37.5 278 149-457 107-393 (420)
76 4e54_B DNA damage-binding prot 100.0 3.4E-39 1.2E-43 300.3 29.3 297 18-419 113-432 (435)
77 3i2n_A WD repeat-containing pr 100.0 1.6E-38 5.5E-43 288.3 33.0 305 18-419 12-355 (357)
78 3bg1_A Protein SEC13 homolog; 100.0 1.7E-39 5.7E-44 288.9 24.1 256 142-417 8-293 (316)
79 2j04_B YDR362CP, TAU91; beta p 100.0 2E-39 6.9E-44 304.8 25.7 337 23-418 132-518 (524)
80 4ggc_A P55CDC, cell division c 100.0 1.5E-37 5.2E-42 277.2 36.3 277 150-457 28-313 (318)
81 3odt_A Protein DOA1; ubiquitin 100.0 3.6E-37 1.2E-41 274.1 38.0 290 15-421 9-300 (313)
82 4a11_B DNA excision repair pro 100.0 1.1E-37 3.8E-42 288.1 35.8 344 16-457 35-403 (408)
83 1yfq_A Cell cycle arrest prote 100.0 8.1E-38 2.8E-42 282.0 33.2 289 140-451 4-315 (342)
84 3dw8_B Serine/threonine-protei 100.0 1.1E-37 3.6E-42 291.9 34.1 296 145-456 26-443 (447)
85 2j04_A TAU60, YPL007P, hypothe 100.0 7.7E-39 2.6E-43 293.0 24.7 317 23-448 14-350 (588)
86 2pm7_B Protein transport prote 100.0 3.8E-37 1.3E-41 271.3 34.0 249 188-457 6-283 (297)
87 3k26_A Polycomb protein EED; W 100.0 3.2E-38 1.1E-42 287.4 27.5 296 19-365 13-365 (366)
88 3f3f_A Nucleoporin SEH1; struc 100.0 1E-37 3.4E-42 282.1 30.0 294 141-458 5-336 (351)
89 3v7d_B Cell division control p 100.0 1.3E-36 4.6E-41 285.8 36.5 284 139-458 113-420 (464)
90 3jrp_A Fusion protein of prote 100.0 3.3E-37 1.1E-41 282.0 30.7 259 139-416 3-286 (379)
91 3gre_A Serine/threonine-protei 100.0 1E-37 3.5E-42 291.1 27.4 309 15-363 53-437 (437)
92 3mmy_A MRNA export factor; mRN 100.0 5.1E-37 1.8E-41 279.5 30.4 307 128-456 20-343 (368)
93 4aez_A CDC20, WD repeat-contai 100.0 1.7E-36 5.9E-41 279.1 33.9 251 145-425 132-388 (401)
94 3jrp_A Fusion protein of prote 100.0 4.7E-37 1.6E-41 281.0 29.5 263 16-370 3-291 (379)
95 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-36 1.1E-40 280.4 35.3 277 141-458 127-413 (435)
96 3dw8_B Serine/threonine-protei 100.0 1.6E-36 5.4E-41 283.9 33.4 305 23-416 27-445 (447)
97 3bg1_A Protein SEC13 homolog; 100.0 1.5E-37 5.2E-42 276.3 25.2 249 187-457 9-291 (316)
98 1yfq_A Cell cycle arrest prote 100.0 2.5E-36 8.6E-41 272.2 32.8 285 18-414 5-321 (342)
99 3mmy_A MRNA export factor; mRN 100.0 7.8E-36 2.7E-40 271.7 32.5 291 16-416 31-345 (368)
100 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.1E-35 1.8E-39 273.3 38.6 278 139-458 110-390 (445)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 2.8E-36 9.6E-41 278.0 28.2 285 149-457 36-340 (402)
102 4gga_A P55CDC, cell division c 100.0 4.9E-35 1.7E-39 271.1 36.6 290 84-436 117-414 (420)
103 1p22_A F-BOX/WD-repeat protein 100.0 1E-35 3.5E-40 277.0 31.9 265 140-437 166-433 (435)
104 3f3f_A Nucleoporin SEH1; struc 100.0 3.5E-35 1.2E-39 265.3 33.9 262 18-370 5-341 (351)
105 3vu4_A KMHSV2; beta-propeller 100.0 6E-35 2E-39 263.7 33.2 281 139-457 11-334 (355)
106 3jro_A Fusion protein of prote 100.0 6.4E-36 2.2E-40 296.2 27.3 261 140-417 2-285 (753)
107 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-35 3.9E-40 272.1 26.4 264 145-458 13-296 (588)
108 4gq1_A NUP37; propeller, trans 100.0 5.2E-36 1.8E-40 274.6 22.7 339 19-457 13-387 (393)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.2E-35 2.8E-39 272.0 31.0 293 148-457 5-389 (450)
110 2xyi_A Probable histone-bindin 100.0 1.7E-34 5.9E-39 268.0 32.4 250 186-458 123-409 (430)
111 2aq5_A Coronin-1A; WD40 repeat 100.0 2E-34 6.9E-39 265.5 31.6 285 82-418 46-343 (402)
112 3bws_A Protein LP49; two-domai 100.0 3.9E-33 1.3E-37 259.8 40.4 286 141-458 117-431 (433)
113 3lrv_A PRE-mRNA-splicing facto 100.0 3E-35 1E-39 264.9 24.2 268 154-455 43-329 (343)
114 3dwl_C Actin-related protein 2 100.0 1.5E-35 5.1E-40 270.9 22.1 250 190-457 10-279 (377)
115 4ggc_A P55CDC, cell division c 100.0 9.9E-34 3.4E-38 252.5 33.2 282 27-367 28-316 (318)
116 3vu4_A KMHSV2; beta-propeller 100.0 1.9E-33 6.6E-38 253.9 32.9 291 16-419 11-338 (355)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-32 4.1E-37 257.4 32.5 252 142-418 97-392 (450)
118 1l0q_A Surface layer protein; 100.0 1.2E-31 4.3E-36 246.1 37.8 307 83-457 2-340 (391)
119 3jro_A Fusion protein of prote 100.0 7.4E-33 2.5E-37 274.2 29.6 251 187-458 5-284 (753)
120 2xyi_A Probable histone-bindin 100.0 3E-32 1E-36 252.9 31.3 261 141-418 122-411 (430)
121 3bws_A Protein LP49; two-domai 100.0 3E-31 1E-35 247.1 37.0 289 76-417 127-432 (433)
122 1l0q_A Surface layer protein; 100.0 3.5E-31 1.2E-35 243.1 35.8 266 160-458 3-274 (391)
123 3lrv_A PRE-mRNA-splicing facto 100.0 3.9E-32 1.3E-36 244.6 28.3 271 77-417 42-333 (343)
124 2w18_A PALB2, fancn, partner a 100.0 1.1E-31 3.7E-36 231.0 28.8 254 139-458 78-356 (356)
125 1k32_A Tricorn protease; prote 100.0 2.5E-31 8.7E-36 273.0 35.1 393 16-457 44-500 (1045)
126 1k32_A Tricorn protease; prote 100.0 2.4E-30 8.1E-35 265.8 36.4 408 16-458 91-636 (1045)
127 1nir_A Nitrite reductase; hemo 100.0 1.5E-29 5.2E-34 239.8 37.0 316 79-457 145-512 (543)
128 1nir_A Nitrite reductase; hemo 100.0 4.2E-30 1.4E-34 243.6 32.5 342 29-425 142-522 (543)
129 4gq1_A NUP37; propeller, trans 100.0 4.4E-30 1.5E-34 235.3 19.5 263 23-365 88-388 (393)
130 2w18_A PALB2, fancn, partner a 100.0 4.8E-28 1.6E-32 208.4 30.1 228 114-364 114-355 (356)
131 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-27 4.1E-32 238.0 37.7 294 148-457 109-457 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 4.2E-28 1.4E-32 223.3 30.0 267 141-441 111-410 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 6.4E-29 2.2E-33 228.8 23.4 283 147-458 62-386 (415)
134 1ri6_A Putative isomerase YBHE 100.0 6.3E-27 2.1E-31 210.7 29.4 277 161-457 7-306 (343)
135 2ecf_A Dipeptidyl peptidase IV 100.0 2.4E-26 8.1E-31 228.7 29.1 285 147-457 36-411 (741)
136 1xfd_A DIP, dipeptidyl aminope 100.0 8.8E-26 3E-30 224.0 31.6 294 142-446 52-427 (723)
137 2z3z_A Dipeptidyl aminopeptida 100.0 9.6E-26 3.3E-30 223.0 31.6 296 146-458 80-434 (706)
138 3u4y_A Uncharacterized protein 100.0 7E-25 2.4E-29 196.3 34.3 277 153-458 3-303 (331)
139 1xfd_A DIP, dipeptidyl aminope 99.9 5.9E-26 2E-30 225.3 27.4 284 149-458 18-392 (723)
140 3vgz_A Uncharacterized protein 99.9 1.1E-24 3.7E-29 196.9 33.4 274 147-449 40-334 (353)
141 3u4y_A Uncharacterized protein 99.9 1.4E-24 4.8E-29 194.4 32.2 284 82-419 9-306 (331)
142 1ri6_A Putative isomerase YBHE 99.9 1.1E-24 3.9E-29 195.9 30.5 271 145-441 35-335 (343)
143 1pby_B Quinohemoprotein amine 99.9 8.4E-25 2.9E-29 196.3 26.1 278 160-458 2-309 (337)
144 2z3z_A Dipeptidyl aminopeptida 99.9 2.2E-24 7.5E-29 213.3 30.5 252 145-419 118-437 (706)
145 2ojh_A Uncharacterized protein 99.9 2E-24 6.8E-29 190.0 25.6 260 164-450 17-293 (297)
146 3hfq_A Uncharacterized protein 99.9 1.2E-23 4E-28 189.6 30.4 277 167-457 14-315 (347)
147 3o4h_A Acylamino-acid-releasin 99.9 1.5E-24 5E-29 209.5 24.3 269 147-457 21-313 (582)
148 1pby_B Quinohemoprotein amine 99.9 1.2E-23 4.1E-28 188.7 26.0 273 84-424 2-317 (337)
149 3o4h_A Acylamino-acid-releasin 99.9 1.4E-23 4.8E-28 202.6 27.9 233 148-417 65-315 (582)
150 1jmx_B Amine dehydrogenase; ox 99.9 1.8E-23 6.1E-28 188.6 24.9 279 152-458 4-324 (349)
151 2ojh_A Uncharacterized protein 99.9 1.1E-23 3.7E-28 185.3 22.5 237 142-408 36-293 (297)
152 3scy_A Hypothetical bacterial 99.9 4E-22 1.4E-26 180.6 31.1 279 159-458 13-336 (361)
153 3scy_A Hypothetical bacterial 99.9 1.9E-21 6.4E-26 176.2 34.9 269 146-437 48-360 (361)
154 3vgz_A Uncharacterized protein 99.9 1.3E-21 4.4E-26 176.7 31.9 245 191-458 40-302 (353)
155 1z68_A Fibroblast activation p 99.9 1.7E-22 5.8E-27 200.2 27.2 292 149-457 61-441 (719)
156 3hfq_A Uncharacterized protein 99.9 3.4E-22 1.2E-26 180.1 25.7 250 145-416 37-316 (347)
157 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-21 6.9E-26 179.3 29.6 291 147-457 36-403 (434)
158 1z68_A Fibroblast activation p 99.9 5.9E-23 2E-27 203.4 20.4 274 152-457 20-389 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 3.7E-21 1.3E-25 174.3 28.2 288 162-457 5-339 (365)
160 3pe7_A Oligogalacturonate lyas 99.9 7.6E-22 2.6E-26 180.7 22.8 305 139-457 22-380 (388)
161 1jmx_B Amine dehydrogenase; ox 99.9 5.3E-21 1.8E-25 172.4 27.6 285 28-370 3-329 (349)
162 4a5s_A Dipeptidyl peptidase 4 99.9 2.8E-20 9.6E-25 184.3 30.4 290 151-457 65-447 (740)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 6.6E-20 2.3E-24 166.0 26.7 253 146-418 38-342 (365)
164 2oit_A Nucleoporin 214KDA; NH2 99.9 4.5E-20 1.5E-24 170.3 25.9 223 169-418 23-279 (434)
165 4a5s_A Dipeptidyl peptidase 4 99.9 9.7E-20 3.3E-24 180.4 28.9 281 148-456 17-395 (740)
166 3c5m_A Oligogalacturonate lyas 99.9 1.9E-20 6.5E-25 171.8 18.7 279 149-457 37-380 (396)
167 3azo_A Aminopeptidase; POP fam 99.8 1.7E-18 5.9E-23 169.8 30.0 304 142-456 18-364 (662)
168 1q7f_A NHL, brain tumor CG1071 99.8 3.5E-17 1.2E-21 142.9 34.0 247 145-418 27-281 (286)
169 2oiz_A Aromatic amine dehydrog 99.8 1.6E-18 5.4E-23 156.2 25.0 276 158-458 14-333 (361)
170 3fvz_A Peptidyl-glycine alpha- 99.8 1.2E-17 4.3E-22 148.7 29.8 250 147-418 23-323 (329)
171 1q7f_A NHL, brain tumor CG1071 99.8 2.9E-17 9.8E-22 143.5 30.6 239 192-458 30-279 (286)
172 3fvz_A Peptidyl-glycine alpha- 99.8 1.1E-17 3.8E-22 149.0 28.0 244 191-457 23-320 (329)
173 1qks_A Cytochrome CD1 nitrite 99.8 3.3E-17 1.1E-21 154.8 32.5 339 34-424 164-545 (567)
174 2oiz_A Aromatic amine dehydrog 99.8 1E-17 3.6E-22 150.8 27.9 267 142-441 46-360 (361)
175 3azo_A Aminopeptidase; POP fam 99.8 3.5E-18 1.2E-22 167.7 26.9 242 156-419 87-371 (662)
176 2dg1_A DRP35, lactonase; beta 99.8 5.6E-18 1.9E-22 151.5 25.7 282 148-449 6-300 (333)
177 3pe7_A Oligogalacturonate lyas 99.8 5.6E-18 1.9E-22 154.9 25.6 298 16-365 22-381 (388)
178 1qks_A Cytochrome CD1 nitrite 99.8 7.1E-16 2.4E-20 145.8 39.5 284 149-457 198-536 (567)
179 3c5m_A Oligogalacturonate lyas 99.8 1.7E-18 5.9E-23 158.8 19.1 250 152-418 85-385 (396)
180 2z2n_A Virginiamycin B lyase; 99.8 3E-15 1E-19 131.5 39.1 283 143-457 10-293 (299)
181 2gop_A Trilobed protease; beta 99.8 3.3E-17 1.1E-21 147.4 26.5 270 148-457 15-329 (347)
182 3dsm_A Uncharacterized protein 99.8 3.9E-16 1.3E-20 138.7 30.2 261 167-458 15-301 (328)
183 2dg1_A DRP35, lactonase; beta 99.8 1.7E-15 5.9E-20 135.3 33.0 251 139-407 36-300 (333)
184 2qc5_A Streptogramin B lactona 99.7 4.2E-14 1.4E-18 124.1 36.9 281 145-457 17-298 (300)
185 2xdw_A Prolyl endopeptidase; a 99.7 1.2E-15 4.3E-20 150.4 29.8 255 193-457 126-412 (710)
186 1rwi_B Serine/threonine-protei 99.7 2.9E-15 9.8E-20 129.5 28.3 238 193-458 25-263 (270)
187 3e5z_A Putative gluconolactona 99.7 1.9E-15 6.3E-20 132.6 27.0 234 191-453 27-281 (296)
188 3e5z_A Putative gluconolactona 99.7 5.2E-15 1.8E-19 129.7 29.2 254 142-418 22-287 (296)
189 3no2_A Uncharacterized protein 99.7 8.9E-15 3E-19 126.1 27.9 215 202-446 3-230 (276)
190 1rwi_B Serine/threonine-protei 99.7 1.4E-14 4.8E-19 125.1 29.2 241 149-419 25-266 (270)
191 2bkl_A Prolyl endopeptidase; m 99.7 1.1E-15 3.6E-20 150.4 24.1 292 156-458 76-396 (695)
192 3dsm_A Uncharacterized protein 99.7 2.3E-14 7.7E-19 127.3 28.7 255 149-436 45-319 (328)
193 2gop_A Trilobed protease; beta 99.7 4.4E-15 1.5E-19 133.4 23.4 205 213-457 42-289 (347)
194 2mad_H Methylamine dehydrogena 99.7 1.2E-13 4.2E-18 124.2 31.9 278 155-458 28-349 (373)
195 2xdw_A Prolyl endopeptidase; a 99.7 1.8E-14 6.2E-19 142.1 28.4 251 145-419 122-416 (710)
196 2bkl_A Prolyl endopeptidase; m 99.7 4.2E-15 1.4E-19 146.2 23.4 250 145-419 118-399 (695)
197 2z2n_A Virginiamycin B lyase; 99.7 7.4E-13 2.5E-17 116.1 33.6 237 192-457 15-253 (299)
198 1yr2_A Prolyl oligopeptidase; 99.7 6E-14 2.1E-18 138.9 28.3 288 156-458 115-440 (741)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2E-13 7E-18 120.7 27.1 245 193-458 19-298 (314)
200 3no2_A Uncharacterized protein 99.6 3.2E-13 1.1E-17 116.3 26.3 238 81-375 3-260 (276)
201 3c75_H MADH, methylamine dehyd 99.6 2E-13 6.9E-18 123.3 24.4 278 157-458 82-401 (426)
202 3g4e_A Regucalcin; six bladed 99.6 1.1E-12 3.8E-17 114.7 28.4 228 194-445 15-258 (297)
203 2qc5_A Streptogramin B lactona 99.6 6.8E-12 2.3E-16 110.0 33.5 239 191-457 19-258 (300)
204 2mad_H Methylamine dehydrogena 99.6 1.2E-11 4.1E-16 111.2 34.4 240 152-423 70-356 (373)
205 3sjl_D Methylamine dehydrogena 99.6 4E-13 1.4E-17 119.1 24.2 281 153-457 38-361 (386)
206 3sjl_D Methylamine dehydrogena 99.6 4.7E-13 1.6E-17 118.7 24.1 257 152-439 82-384 (386)
207 3hrp_A Uncharacterized protein 99.6 2.3E-12 7.7E-17 117.7 29.2 250 192-458 131-409 (409)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 5E-12 1.7E-16 111.7 30.6 258 145-418 15-300 (314)
209 1xip_A Nucleoporin NUP159; bet 99.6 1.9E-13 6.4E-18 121.8 19.3 171 237-445 38-230 (388)
210 1yr2_A Prolyl oligopeptidase; 99.6 4.9E-13 1.7E-17 132.4 24.2 250 146-419 161-443 (741)
211 3hrp_A Uncharacterized protein 99.5 1.4E-11 4.7E-16 112.5 30.3 248 148-415 131-408 (409)
212 2qe8_A Uncharacterized protein 99.5 4.5E-13 1.5E-17 119.8 18.8 275 148-450 17-312 (343)
213 2ghs_A AGR_C_1268P; regucalcin 99.5 2.4E-11 8.1E-16 107.7 28.5 227 194-446 51-289 (326)
214 2ece_A 462AA long hypothetical 99.5 1.2E-11 4.3E-16 110.2 25.7 237 202-447 94-399 (462)
215 3dr2_A Exported gluconolactona 99.5 1.3E-11 4.6E-16 108.3 23.8 233 192-454 45-302 (305)
216 3g4e_A Regucalcin; six bladed 99.5 1.4E-10 4.8E-15 101.4 29.8 240 145-406 10-261 (297)
217 3iuj_A Prolyl endopeptidase; h 99.5 5.5E-12 1.9E-16 123.7 23.0 251 192-457 129-403 (693)
218 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-12 4.2E-17 116.5 16.0 174 149-353 39-231 (388)
219 3dr2_A Exported gluconolactona 99.5 1.3E-10 4.4E-15 102.1 28.7 244 142-408 39-298 (305)
220 3c75_H MADH, methylamine dehyd 99.4 1.7E-11 6E-16 110.7 22.3 252 140-424 112-409 (426)
221 3iuj_A Prolyl endopeptidase; h 99.4 1.5E-11 5.3E-16 120.6 23.5 247 145-419 126-407 (693)
222 2ece_A 462AA long hypothetical 99.4 1.4E-10 4.9E-15 103.4 26.4 247 157-405 93-399 (462)
223 2ghs_A AGR_C_1268P; regucalcin 99.4 5.3E-10 1.8E-14 99.0 30.5 230 149-407 50-292 (326)
224 2qe8_A Uncharacterized protein 99.4 3.1E-11 1.1E-15 107.8 20.2 233 192-457 17-276 (343)
225 1yiq_A Quinohemoprotein alcoho 99.4 3.2E-10 1.1E-14 110.5 28.1 288 159-458 70-504 (689)
226 1yiq_A Quinohemoprotein alcoho 99.4 2.8E-10 9.6E-15 110.9 26.6 269 159-444 121-533 (689)
227 1mda_H Methylamine dehydrogena 99.4 2.1E-11 7.3E-16 108.3 16.9 256 170-458 47-345 (368)
228 1kb0_A Quinohemoprotein alcoho 99.4 1.9E-10 6.4E-15 111.9 25.0 269 159-444 128-535 (677)
229 1kb0_A Quinohemoprotein alcoho 99.4 2.9E-10 1E-14 110.5 26.2 287 159-458 77-506 (677)
230 1fwx_A Nitrous oxide reductase 99.3 5.9E-10 2E-14 103.1 23.7 238 206-457 17-359 (595)
231 3q7m_A Lipoprotein YFGL, BAMB; 99.3 9.5E-09 3.3E-13 93.1 31.8 262 158-456 102-375 (376)
232 3hxj_A Pyrrolo-quinoline quino 99.3 2.9E-10 9.8E-15 101.1 20.7 262 149-457 61-322 (330)
233 1npe_A Nidogen, entactin; glyc 99.3 1.6E-08 5.6E-13 86.6 30.4 252 160-441 2-263 (267)
234 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.3E-15 103.4 17.3 257 139-438 58-366 (368)
235 3q7m_A Lipoprotein YFGL, BAMB; 99.3 8.5E-09 2.9E-13 93.4 29.2 262 159-457 53-335 (376)
236 1fwx_A Nitrous oxide reductase 99.3 5E-10 1.7E-14 103.6 20.8 239 203-447 100-406 (595)
237 2iwa_A Glutamine cyclotransfer 99.2 1.3E-08 4.6E-13 85.3 24.5 210 136-367 8-238 (266)
238 2hz6_A Endoplasmic reticulum t 99.2 6.9E-12 2.4E-16 113.0 4.4 204 203-441 8-216 (369)
239 4a2l_A BT_4663, two-component 99.2 1.2E-06 4E-11 87.6 42.1 283 146-456 213-523 (795)
240 4a2l_A BT_4663, two-component 99.2 1.3E-06 4.5E-11 87.2 42.2 282 147-457 262-569 (795)
241 3nol_A Glutamine cyclotransfer 99.2 1.9E-08 6.6E-13 83.2 23.7 197 133-355 27-244 (262)
242 2hz6_A Endoplasmic reticulum t 99.2 1.2E-11 3.9E-16 111.6 5.0 187 158-373 8-198 (369)
243 2iwa_A Glutamine cyclotransfer 99.2 2.9E-08 9.9E-13 83.3 24.7 204 194-418 23-238 (266)
244 3nol_A Glutamine cyclotransfer 99.1 6.1E-08 2.1E-12 80.2 24.0 190 194-407 45-245 (262)
245 1kv9_A Type II quinohemoprotei 99.1 4.4E-08 1.5E-12 95.2 26.4 287 159-457 66-486 (668)
246 3mbr_X Glutamine cyclotransfer 99.1 1.5E-07 5E-12 77.3 24.9 192 192-407 21-224 (243)
247 3nok_A Glutaminyl cyclase; bet 99.0 9.4E-08 3.2E-12 79.1 22.0 189 194-407 57-255 (268)
248 3v9f_A Two-component system se 99.0 2.1E-05 7.1E-10 78.4 43.3 284 147-457 257-566 (781)
249 1kv9_A Type II quinohemoprotei 99.0 8.5E-08 2.9E-12 93.2 24.9 271 159-446 117-519 (668)
250 3nok_A Glutaminyl cyclase; bet 99.0 1.9E-07 6.4E-12 77.3 22.9 192 138-354 44-253 (268)
251 3v9f_A Two-component system se 99.0 2.3E-05 7.9E-10 78.1 42.1 279 148-456 211-521 (781)
252 2fp8_A Strictosidine synthase; 99.0 4.9E-07 1.7E-11 79.8 26.5 259 148-418 19-314 (322)
253 2fp8_A Strictosidine synthase; 99.0 1.8E-07 6E-12 82.6 23.4 237 194-458 21-312 (322)
254 1k3i_A Galactose oxidase precu 99.0 2E-07 6.9E-12 90.8 25.6 279 152-448 190-530 (656)
255 1npe_A Nidogen, entactin; glyc 99.0 1.6E-06 5.3E-11 74.2 28.2 224 206-457 3-236 (267)
256 3mbr_X Glutamine cyclotransfer 99.0 4.6E-07 1.6E-11 74.4 23.3 192 138-355 10-223 (243)
257 2ad6_A Methanol dehydrogenase 99.0 3.9E-07 1.3E-11 86.7 26.0 269 159-444 115-522 (571)
258 2p4o_A Hypothetical protein; p 99.0 1.4E-06 4.7E-11 76.2 27.4 230 192-447 32-276 (306)
259 3hxj_A Pyrrolo-quinoline quino 98.9 2.4E-07 8.1E-12 82.1 22.6 191 145-366 134-324 (330)
260 2ad6_A Methanol dehydrogenase 98.9 3.8E-07 1.3E-11 86.8 24.6 284 160-457 63-492 (571)
261 3v64_C Agrin; beta propeller, 98.9 1.6E-05 5.5E-10 70.7 33.5 242 147-419 33-277 (349)
262 3qqz_A Putative uncharacterize 98.9 6.8E-06 2.3E-10 68.5 28.4 206 192-415 27-251 (255)
263 3v65_B Low-density lipoprotein 98.9 1.7E-05 5.8E-10 71.6 33.1 242 149-421 78-322 (386)
264 1ijq_A LDL receptor, low-densi 98.9 2.7E-05 9.3E-10 68.2 32.6 230 161-419 3-240 (316)
265 2p4o_A Hypothetical protein; p 98.8 1.2E-05 4E-10 70.3 29.2 239 139-408 24-279 (306)
266 1w6s_A Methanol dehydrogenase 98.8 1.2E-06 4.2E-11 83.2 24.5 288 159-457 62-501 (599)
267 1w6s_A Methanol dehydrogenase 98.8 1.6E-06 5.4E-11 82.5 24.8 264 161-442 123-529 (599)
268 3p5b_L Low density lipoprotein 98.8 5.5E-05 1.9E-09 68.5 33.6 237 161-425 85-328 (400)
269 1flg_A Protein (quinoprotein e 98.8 4.3E-06 1.5E-10 79.7 26.9 271 159-443 117-543 (582)
270 1flg_A Protein (quinoprotein e 98.8 9.9E-06 3.4E-10 77.2 29.3 285 161-457 70-514 (582)
271 3v64_C Agrin; beta propeller, 98.7 5.1E-05 1.7E-09 67.4 29.7 216 214-456 53-272 (349)
272 3v65_B Low-density lipoprotein 98.7 3.1E-05 1.1E-09 69.9 28.5 223 206-456 89-315 (386)
273 1k3i_A Galactose oxidase precu 98.7 8.9E-06 3E-10 79.2 26.0 246 148-406 243-530 (656)
274 3qqz_A Putative uncharacterize 98.7 6.9E-05 2.4E-09 62.5 27.5 207 141-363 20-250 (255)
275 3tc9_A Hypothetical hydrolase; 98.7 1.8E-05 6.1E-10 72.5 25.4 249 193-458 138-429 (430)
276 1ijq_A LDL receptor, low-densi 98.7 0.00016 5.6E-09 63.2 30.5 217 214-456 10-235 (316)
277 4hw6_A Hypothetical protein, I 98.6 2E-05 6.7E-10 72.2 24.8 249 193-458 140-432 (433)
278 3sov_A LRP-6, low-density lipo 98.6 0.00018 6.3E-09 62.8 29.5 226 168-420 12-241 (318)
279 2xbg_A YCF48-like protein; pho 98.6 0.00028 9.6E-09 62.0 34.9 275 147-456 35-319 (327)
280 4hw6_A Hypothetical protein, I 98.6 0.00011 3.7E-09 67.3 28.3 245 149-416 140-432 (433)
281 2xe4_A Oligopeptidase B; hydro 98.6 4.6E-05 1.6E-09 75.3 27.2 197 149-364 175-398 (751)
282 3ei3_A DNA damage-binding prot 98.6 0.0011 3.9E-08 68.0 39.0 378 24-457 553-997 (1158)
283 3kya_A Putative phosphatase; s 98.6 8.6E-05 2.9E-09 68.2 26.4 255 193-458 140-474 (496)
284 3tc9_A Hypothetical hydrolase; 98.5 6.7E-05 2.3E-09 68.7 25.8 244 149-416 138-429 (430)
285 3s94_A LRP-6, low-density lipo 98.5 0.00075 2.6E-08 64.7 41.6 297 147-457 170-508 (619)
286 3p5b_L Low density lipoprotein 98.5 0.00032 1.1E-08 63.6 29.9 216 214-456 92-317 (400)
287 3m0c_C LDL receptor, low-densi 98.5 0.00057 2E-08 67.2 32.4 241 151-421 388-636 (791)
288 2xe4_A Oligopeptidase B; hydro 98.5 1.3E-05 4.4E-10 79.2 21.2 195 238-455 175-394 (751)
289 2xzh_A Clathrin heavy chain 1; 98.5 0.0004 1.4E-08 59.0 28.3 261 167-453 47-326 (365)
290 2p9w_A MAL S 1 allergenic prot 98.4 0.00015 5.1E-09 62.2 23.1 219 194-417 15-265 (334)
291 3kya_A Putative phosphatase; s 98.4 0.00028 9.6E-09 64.8 26.3 252 149-419 140-477 (496)
292 3sov_A LRP-6, low-density lipo 98.4 0.00026 9E-09 61.8 25.3 220 213-457 12-236 (318)
293 1n7d_A LDL receptor, low-densi 98.4 5E-06 1.7E-10 81.0 15.1 226 168-420 385-617 (699)
294 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0018 6.2E-08 62.2 34.0 228 161-419 8-239 (628)
295 1bpo_A Protein (clathrin); cla 98.3 0.0014 4.7E-08 58.1 28.1 260 168-453 47-325 (494)
296 2p9w_A MAL S 1 allergenic prot 98.3 0.00065 2.2E-08 58.4 23.8 203 237-456 13-262 (334)
297 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0051 1.8E-07 59.1 45.3 298 146-458 164-507 (628)
298 3amr_A 3-phytase; beta-propell 98.2 0.00054 1.8E-08 59.4 21.1 191 204-416 40-262 (355)
299 2ism_A Putative oxidoreductase 98.2 0.0029 9.8E-08 56.2 26.4 248 148-405 31-333 (352)
300 3m0c_C LDL receptor, low-densi 98.1 0.0049 1.7E-07 60.7 29.8 217 213-456 403-629 (791)
301 3pbp_A Nucleoporin NUP82; beta 98.1 0.00051 1.8E-08 60.8 20.0 141 272-413 42-208 (452)
302 3ei3_A DNA damage-binding prot 98.1 0.014 4.6E-07 60.3 35.7 292 147-455 553-951 (1158)
303 1n7d_A LDL receptor, low-densi 98.1 4.9E-05 1.7E-09 74.1 14.3 218 213-457 385-612 (699)
304 2vpj_A Kelch-like protein 12; 98.1 0.0022 7.7E-08 55.5 23.6 235 158-418 14-279 (301)
305 3s94_A LRP-6, low-density lipo 98.1 0.0096 3.3E-07 57.1 38.9 184 214-420 326-513 (619)
306 2vpj_A Kelch-like protein 12; 98.0 0.0014 4.8E-08 56.8 21.8 230 203-457 14-276 (301)
307 3amr_A 3-phytase; beta-propell 98.0 0.0048 1.6E-07 53.6 22.8 186 158-365 39-262 (355)
308 2xn4_A Kelch-like protein 2; s 98.0 0.0027 9.4E-08 55.0 22.1 229 204-457 16-274 (302)
309 3ii7_A Kelch-like protein 7; p 97.9 0.0061 2.1E-07 52.8 22.8 228 204-457 12-270 (306)
310 3ii7_A Kelch-like protein 7; p 97.9 0.01 3.5E-07 51.4 24.3 233 161-418 14-273 (306)
311 2xn4_A Kelch-like protein 2; s 97.9 0.0038 1.3E-07 54.0 21.2 193 203-418 61-277 (302)
312 3a9g_A Putative uncharacterize 97.8 0.014 4.7E-07 51.7 30.0 248 148-405 29-330 (354)
313 1zgk_A Kelch-like ECH-associat 97.8 0.0093 3.2E-07 51.7 22.5 235 158-418 24-288 (308)
314 2ism_A Putative oxidoreductase 97.8 0.019 6.6E-07 50.8 24.5 102 237-354 31-153 (352)
315 1zgk_A Kelch-like ECH-associat 97.7 0.0068 2.3E-07 52.6 20.7 234 203-457 24-285 (308)
316 4asc_A Kelch repeat and BTB do 97.7 0.0082 2.8E-07 52.3 21.0 196 205-418 6-222 (315)
317 3sre_A PON1, serum paraoxonase 97.7 0.015 5.3E-07 51.0 21.9 199 238-449 51-287 (355)
318 2xbg_A YCF48-like protein; pho 97.6 0.029 1E-06 49.1 31.9 231 191-453 35-273 (327)
319 3pbp_A Nucleoporin NUP82; beta 97.6 0.01 3.6E-07 52.6 19.1 145 202-362 30-208 (452)
320 2be1_A Serine/threonine-protei 97.6 0.001 3.5E-08 57.9 12.8 147 204-363 10-181 (339)
321 3sbq_A Nitrous-oxide reductase 97.5 0.054 1.8E-06 49.8 24.3 238 206-457 72-406 (638)
322 1xi4_A Clathrin heavy chain; a 97.5 0.018 6.3E-07 59.1 21.9 242 168-435 47-307 (1630)
323 4asc_A Kelch repeat and BTB do 97.5 0.033 1.1E-06 48.4 21.7 190 162-367 8-222 (315)
324 2woz_A Kelch repeat and BTB do 97.5 0.036 1.2E-06 48.3 21.4 196 205-418 17-232 (318)
325 3sbq_A Nitrous-oxide reductase 97.5 0.064 2.2E-06 49.3 22.7 211 203-417 141-408 (638)
326 1cru_A Protein (soluble quinop 97.4 0.0099 3.4E-07 54.6 17.9 109 295-405 28-162 (454)
327 1tl2_A L10, protein (tachylect 97.4 0.0018 6E-08 51.8 11.0 147 295-452 42-203 (236)
328 3a9g_A Putative uncharacterize 97.4 0.058 2E-06 47.7 27.8 242 192-447 29-330 (354)
329 1bpo_A Protein (clathrin); cla 97.3 0.081 2.8E-06 47.1 24.4 212 213-458 47-288 (494)
330 2g8s_A Glucose/sorbosone dehyd 97.3 0.082 2.8E-06 46.7 27.4 253 149-410 19-347 (353)
331 3das_A Putative oxidoreductase 97.1 0.11 3.8E-06 45.4 28.2 257 140-405 24-326 (347)
332 3ott_A Two-component system se 97.1 0.24 8.2E-06 49.0 35.2 273 148-452 63-346 (758)
333 3sre_A PON1, serum paraoxonase 97.1 0.14 4.8E-06 45.0 24.1 199 150-355 52-286 (355)
334 2g8s_A Glucose/sorbosone dehyd 97.0 0.16 5.4E-06 44.9 26.2 251 193-452 19-347 (353)
335 2uvk_A YJHT; unknown function, 96.9 0.067 2.3E-06 47.4 17.8 106 203-314 19-128 (357)
336 3s25_A Hypothetical 7-bladed b 96.9 0.18 6.1E-06 43.3 21.5 175 242-446 58-240 (302)
337 1tl2_A L10, protein (tachylect 96.9 0.054 1.9E-06 43.4 14.4 150 237-410 41-203 (236)
338 2woz_A Kelch repeat and BTB do 96.8 0.23 7.8E-06 43.0 22.0 185 156-356 54-263 (318)
339 2zwa_A Leucine carboxyl methyl 96.8 0.18 6E-06 49.3 20.5 206 202-419 396-637 (695)
340 2uvk_A YJHT; unknown function, 96.8 0.18 6.2E-06 44.5 19.2 251 158-422 19-347 (357)
341 3das_A Putative oxidoreductase 96.6 0.33 1.1E-05 42.5 28.4 240 192-446 32-325 (347)
342 2be1_A Serine/threonine-protei 96.4 0.059 2E-06 46.9 12.9 192 161-369 12-234 (339)
343 2zwa_A Leucine carboxyl methyl 96.3 0.32 1.1E-05 47.4 19.0 198 157-367 396-636 (695)
344 1cru_A Protein (soluble quinop 96.3 0.67 2.3E-05 42.4 31.7 120 192-312 27-162 (454)
345 1xi4_A Clathrin heavy chain; a 95.9 0.51 1.8E-05 49.0 18.1 211 214-458 48-288 (1630)
346 2xzh_A Clathrin heavy chain 1; 95.8 0.77 2.6E-05 39.4 28.7 240 154-418 73-333 (365)
347 2wg3_C Hedgehog-interacting pr 95.8 1.1 3.8E-05 41.0 28.2 254 149-405 15-354 (463)
348 3ott_A Two-component system se 95.8 1.7 5.8E-05 42.9 33.0 279 148-456 146-445 (758)
349 3s25_A Hypothetical 7-bladed b 95.4 1.1 3.8E-05 38.3 23.7 163 214-419 88-257 (302)
350 3uc1_A DNA gyrase subunit A; D 93.2 3.8 0.00013 35.4 22.0 161 294-456 95-276 (327)
351 3uc1_A DNA gyrase subunit A; D 92.9 4.2 0.00014 35.2 26.7 274 160-450 4-321 (327)
352 3b7f_A Glycosyl hydrolase, BNR 92.1 6.2 0.00021 35.2 28.0 139 295-437 233-391 (394)
353 3q6k_A 43.2 kDa salivary prote 91.6 6.8 0.00023 34.6 21.6 174 272-446 124-341 (381)
354 3b7f_A Glycosyl hydrolase, BNR 91.5 7.3 0.00025 34.7 28.4 63 294-357 177-254 (394)
355 3qhy_B Beta-lactamase inhibito 91.3 6 0.00021 33.3 22.2 220 192-456 24-243 (282)
356 1suu_A DNA gyrase subunit A; t 90.6 7.5 0.00026 33.3 26.2 121 295-417 101-231 (312)
357 3q6k_A 43.2 kDa salivary prote 89.7 10 0.00035 33.4 20.4 128 271-405 181-342 (381)
358 1suu_A DNA gyrase subunit A; t 89.1 10 0.00034 32.5 28.4 194 157-367 6-232 (312)
359 1wp5_A Topoisomerase IV; broke 86.8 14 0.00049 31.7 26.9 245 157-417 3-277 (323)
360 1zi0_A DNA gyrase subunit A; b 85.0 17 0.00059 31.0 28.2 245 157-417 1-277 (307)
361 3l6v_A GYRA, DNA gyrase subuni 84.2 21 0.00072 31.4 24.8 72 294-366 99-180 (370)
362 1wp5_A Topoisomerase IV; broke 81.8 24 0.00083 30.3 26.3 121 295-417 93-225 (323)
363 3qhy_B Beta-lactamase inhibito 81.1 24 0.0008 29.7 23.4 240 149-440 25-265 (282)
364 2wg3_C Hedgehog-interacting pr 80.7 34 0.0012 31.2 27.9 54 193-247 15-79 (463)
365 1zi0_A DNA gyrase subunit A; b 79.9 27 0.00093 29.7 26.3 121 295-417 96-226 (307)
366 4gq2_M Nucleoporin NUP120; bet 78.5 41 0.0014 34.1 14.3 36 337-372 237-272 (950)
367 4hvt_A Ritya.17583.B, post-pro 78.0 53 0.0018 31.9 23.4 99 212-323 318-429 (711)
368 3no0_A DNA gyrase subunit A; D 78.0 29 0.001 29.0 21.9 159 294-454 68-239 (276)
369 3zwu_A Alkaline phosphatase PH 77.7 48 0.0017 31.3 14.4 72 238-311 477-548 (592)
370 3no0_A DNA gyrase subunit A; D 74.2 37 0.0013 28.3 24.9 198 149-366 25-246 (276)
371 1sqj_A OXG-RCBH, oligoxylogluc 73.7 74 0.0025 31.5 25.0 65 147-212 14-84 (789)
372 3zwu_A Alkaline phosphatase PH 71.8 15 0.00053 34.6 8.6 59 295-353 477-548 (592)
373 4a9v_A PHOX; hydrolase, beta-p 70.0 28 0.00094 32.6 9.6 60 294-353 476-548 (592)
374 4a9v_A PHOX; hydrolase, beta-p 61.2 28 0.00097 32.6 7.9 60 387-446 476-548 (592)
375 1zvt_A Topoisomerase IV subuni 59.3 73 0.0025 26.2 15.1 148 307-457 4-161 (256)
376 3l6v_A GYRA, DNA gyrase subuni 58.6 95 0.0033 27.2 32.0 245 155-416 3-315 (370)
377 3f7f_A Nucleoporin NUP120; nuc 54.0 37 0.0013 32.8 7.6 36 194-232 224-259 (729)
378 2cn3_A Xyloglucanase, beta-1,4 52.1 1.8E+02 0.0061 28.4 25.9 55 193-248 24-83 (737)
379 4hvt_A Ritya.17583.B, post-pro 47.6 2.1E+02 0.0071 27.9 24.8 245 199-457 137-428 (711)
380 4fhn_B Nucleoporin NUP120; pro 44.9 20 0.00067 37.3 4.6 38 295-332 239-276 (1139)
381 3f7f_A Nucleoporin NUP120; nuc 43.2 41 0.0014 32.5 6.0 36 295-332 223-258 (729)
382 4fhn_B Nucleoporin NUP120; pro 38.8 77 0.0026 33.0 7.9 32 388-419 239-270 (1139)
383 2cn3_A Xyloglucanase, beta-1,4 31.9 3.7E+02 0.013 26.2 17.8 111 295-406 24-152 (737)
384 1q47_A Semaphorin 3A; beta pro 30.7 1.6E+02 0.0055 27.1 7.8 67 295-361 405-487 (495)
385 1q47_A Semaphorin 3A; beta pro 29.8 1.2E+02 0.004 28.0 6.7 67 388-454 405-487 (495)
386 3kci_A Probable E3 ubiquitin-p 29.3 2.9E+02 0.0099 24.2 25.0 152 295-456 160-342 (389)
387 4gq2_M Nucleoporin NUP120; bet 26.5 5.2E+02 0.018 26.2 26.1 38 294-331 236-273 (950)
388 3mvd_K Regulator of chromosome 26.1 3.4E+02 0.012 24.0 26.1 156 294-456 179-371 (423)
389 1zxa_A CGMP-dependent protein 26.1 13 0.00044 23.0 -0.2 28 2-29 26-53 (67)
390 3nvq_A Semaphorin-7A; beta-pro 25.2 1.5E+02 0.005 28.0 6.5 56 399-454 381-444 (590)
391 3al9_A Plexin-A2; beta-propell 23.6 1.9E+02 0.0063 27.0 6.9 67 295-361 401-476 (539)
392 1zvt_A Topoisomerase IV subuni 23.0 3.1E+02 0.011 22.4 18.3 72 294-366 84-163 (256)
393 3nvq_A Semaphorin-7A; beta-pro 22.6 2.9E+02 0.0099 26.1 7.9 56 306-361 381-444 (590)
394 4h3o_A Lectin; cadmium, plant 22.5 1.9E+02 0.0064 19.6 11.0 46 340-404 54-99 (105)
395 1sqj_A OXG-RCBH, oligoxylogluc 21.2 6E+02 0.02 25.0 27.4 57 191-248 14-75 (789)
396 2zux_A YESW protein; beta-prop 20.4 5.4E+02 0.018 24.2 24.8 65 281-346 352-424 (591)
397 4gz8_A Semaphorin-3A; multi-do 20.3 2.2E+02 0.0074 27.4 6.7 55 400-454 431-495 (667)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=5.4e-58 Score=444.59 Aligned_cols=419 Identities=15% Similarity=0.174 Sum_probs=321.7
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC--
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN-- 92 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 92 (458)
+..+.|.+|...|++++| +|||++||||+.|++++|||...+..... ..-....+....+.++++++++++++.+
T Consensus 50 ~~~~~~~~h~~~v~~~~~-spdg~~lasg~~d~~v~lWd~~~~~~~~~--~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTTQTTHILK--TTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp SCCEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEESSSTTCCEE--EEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred ccCeEecCCCCceEEEEE-CCCCcEEEEEeCCCCEEEeECCCCcceee--EeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 356788999999999999 99999999999999999999865432100 0000112233445566666677766654
Q ss_pred --CcccccccccccCCcccceeeeccCCCCcCCCc-ceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699 93 --DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRD-AQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIA 163 (458)
Q Consensus 93 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~ 163 (458)
+.+.+|+..................+|+|++.. +++++.++.+++ +....+.+|.+.|++++|+|++++|+
T Consensus 127 ~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 127 RFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 478888854322222222334456779999974 899999988887 45678899999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCCCCccc-----cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC------
Q 012699 164 SASVDGTVRIWTYDSSTPASRNA-----TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT------ 232 (458)
Q Consensus 164 s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------ 232 (458)
+|+.|++|++||+.+++...... ...|...|.+++|+ +++++|++++.|++|++||+.+++....+..
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~ 285 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 285 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence 99999999999998776542211 11577899999999 7889999999999999999998876554321
Q ss_pred -----------------------------------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 233 -----------------------------------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 233 -----------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
..|...|.+++|+|+++.+++++.|+ .|++||
T Consensus 286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~-------------~v~~Wd 352 (611)
T 1nr0_A 286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG-------------HINSWD 352 (611)
T ss_dssp CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-------------CEEEEE
T ss_pred eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC-------------cEEEEE
Confidence 13446799999999999999999874 555555
Q ss_pred CCCCceeEEe-------------------------------------------------------ec--C----------
Q 012699 278 MKTWKAMTVL-------------------------------------------------------PL--G---------- 290 (458)
Q Consensus 278 ~~~~~~~~~~-------------------------------------------------------~~--~---------- 290 (458)
+.+++....+ .+ .
T Consensus 353 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~ 432 (611)
T 1nr0_A 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 432 (611)
T ss_dssp TTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS
T ss_pred CCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCc
Confidence 5443221110 00 0
Q ss_pred -------------CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecC
Q 012699 291 -------------EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 291 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 355 (458)
.+...+.+++|+|+|++|++|+.|+.|++||+.++.. +.. .+|...|++++|+|++++|++++.
T Consensus 433 ~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~ 511 (611)
T 1nr0_A 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQ 511 (611)
T ss_dssp EEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcC
Confidence 1234578999999999999999999999999987643 233 679999999999999999999999
Q ss_pred CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc--cccCCC-CCcEE
Q 012699 356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG--MRTLPH-GAAIT 432 (458)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~~h-~~~v~ 432 (458)
|++|++||+.+..... .......|...|.+++|+|||++|++++.|++|++|++...... ....+| ...|+
T Consensus 512 d~~v~~w~~~~~~~~~------~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~ 585 (611)
T 1nr0_A 512 SRKVIPYSVANNFELA------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 585 (611)
T ss_dssp TSCEEEEEGGGTTEES------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE
T ss_pred CCCEEEEEcCCCCcee------eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCee
Confidence 9999999998733321 11112247889999999999999999999999999999876533 344589 89999
Q ss_pred EEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 433 TVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+++|+|+++ |++++.|++|++|+++
T Consensus 586 ~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 586 SVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999998 9999999999999974
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.5e-56 Score=429.21 Aligned_cols=408 Identities=19% Similarity=0.172 Sum_probs=320.3
Q ss_pred ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccc-eeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTA-THMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
...+...+.+++| +|||++||+++ ++++++|+...+.....+ .|. ....+++++++++++++++.|+++++|
T Consensus 14 ~~~~~g~~~~~~~-spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~-----~~v~~~~~spdg~~lasg~~d~~v~lW 86 (611)
T 1nr0_A 14 PRTARGTAVVLGN-TPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHGNVRIW 86 (611)
T ss_dssp CCCCTTCCCCCEE-CTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS-----SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCcccCceeEEee-CCCCCEEEeCC-CCEEEEecCCCcccCeEecCCC-----CceEEEEECCCCcEEEEEeCCCCEEEe
Confidence 3456777899999 99999999998 579999999765444222 222 234458888889999999999999999
Q ss_pred ccccccCCcccce----eeeccCCCCcCCCcceeccCCC----eeee----eeeeeeccCCCCeEEEEeCCCCC-EEEEE
Q 012699 99 KLEFEDVGAGDII----QMFNDGLYTENGRDAQGEEDFP----EVKV----DFLETFLGHTSPISCCRFSSSGN-NIASA 165 (458)
Q Consensus 99 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~----~~~~----~~~~~~~~h~~~v~~~~~~~~~~-~l~s~ 165 (458)
++........... ......+|+|+|+.++++..+. .+.+ .....+.+|.+.|++++|+|+++ .|++|
T Consensus 87 d~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 87 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred ECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 9864321111111 2235668999999998876543 3333 34567889999999999999987 59999
Q ss_pred eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC-----CCCCcee
Q 012699 166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT-----DAFPSVL 240 (458)
Q Consensus 166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~~v~ 240 (458)
+.|++|++||..+.+... ....|...|.+++|+ +++++|++++.|++|++||+.+++....+... .|...|.
T Consensus 167 s~D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~ 243 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243 (611)
T ss_dssp ETTSCEEEEETTTBEEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred eCCCeEEEEECCCCeEee--eeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence 999999999987654432 344577899999999 68899999999999999999999888776421 3457899
Q ss_pred eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--------------------------------
Q 012699 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-------------------------------- 288 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-------------------------------- 288 (458)
+++|+|++..+++++.|+ .|++||+++++....+.
T Consensus 244 ~v~~spdg~~l~s~s~D~-------------~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~ 310 (611)
T 1nr0_A 244 GLTWSPDGTKIASASADK-------------TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 310 (611)
T ss_dssp EEEECTTSSEEEEEETTS-------------EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCC-------------eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEe
Confidence 999999999999999884 88888877765544332
Q ss_pred ---------cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-e--------------------------
Q 012699 289 ---------LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-P-------------------------- 332 (458)
Q Consensus 289 ---------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-------------------------- 332 (458)
+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ .
T Consensus 311 ~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v 390 (611)
T 1nr0_A 311 PELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 390 (611)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEE
T ss_pred CCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCce
Confidence 2468889999999999999999999999999998765443221 0
Q ss_pred -------------------------------------------------------CCCCCeEEEEEcCCCCEEEEecCCC
Q 012699 333 -------------------------------------------------------AHDSAISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 333 -------------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg 357 (458)
.|...+.+++|+|+|++|++++.|+
T Consensus 391 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~ 470 (611)
T 1nr0_A 391 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 470 (611)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCC
Confidence 1234577899999999999999999
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccc-cC-CCCCcEEEE
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMR-TL-PHGAAITTV 434 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~-~~-~h~~~v~~~ 434 (458)
+|++||+.+....... . ..|...|.+++|+|+|++|++++.|++|++|++.+ .+.... .. +|...|+++
T Consensus 471 ~v~lwd~~~~~~~~~~-------~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v 542 (611)
T 1nr0_A 471 KVHVYKLSGASVSEVK-------T-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 542 (611)
T ss_dssp EEEEEEEETTEEEEEE-------E-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred eEEEEEccCCceeeee-------c-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE
Confidence 9999999864321110 0 24677899999999999999999999999999987 333222 23 499999999
Q ss_pred EECCCCCeEEEecCCCcEEEEeCC
Q 012699 435 DWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+|+|++++||+|+.|++|++|+++
T Consensus 543 ~fspdg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 543 SWSPDNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETT
T ss_pred EECCCCCEEEEEECCCcEEEEECC
Confidence 999999999999999999999974
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.1e-54 Score=414.43 Aligned_cols=408 Identities=17% Similarity=0.284 Sum_probs=331.8
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc------ccceeeeeccCCceeeee----------
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------TTATHMGSAEMGQTWASS---------- 78 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------~~~~~~~~~~~~~~~~~~---------- 78 (458)
+.+++|.+|...|++++| +|||++||+++.|++++|||....... ..+..++|+|+++.++.+
T Consensus 48 ~~~~~l~gh~~~V~~l~f-spdg~~las~~~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~ 126 (577)
T 2ymu_A 48 QLLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126 (577)
T ss_dssp CEEEEEECCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEeCCCCCEEEEEE-CCCCCEEEEEeCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecc
Confidence 457789999999999999 999999999999999999997543322 345566777776655432
Q ss_pred -------------------------------------------------------------CCccceeEeeccCCCcccc
Q 012699 79 -------------------------------------------------------------RPALSRFATNMSGNDSISP 97 (458)
Q Consensus 79 -------------------------------------------------------------~~~~~~~l~~~~~~~~i~~ 97 (458)
+.+++.++++++.|+.+++
T Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 206 (577)
T 2ymu_A 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 206 (577)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred cccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEE
Confidence 2334567888888999999
Q ss_pred cccccccCCcc-cceeeeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcE
Q 012699 98 SKLEFEDVGAG-DIIQMFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTV 171 (458)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 171 (458)
|+......... .........+|+|+++.++++..++.+++ +.+..+.+|...|.+++|+|+++.|++++.|++|
T Consensus 207 w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i 286 (577)
T 2ymu_A 207 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 98543211100 01112245578999999999988888877 4677889999999999999999999999999999
Q ss_pred EEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeE
Q 012699 172 RIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF 251 (458)
Q Consensus 172 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 251 (458)
++||.... .. .....|...|.+++|+ +++.++++++.|+.|++||..... ...+..+. ..+.+++++|++..+
T Consensus 287 ~~w~~~~~-~~--~~~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~--~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 287 KLWNRNGQ-LL--QTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQH-LQTLTGHS--SSVWGVAFSPDGQTI 359 (577)
T ss_dssp EEEETTSC-EE--EEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCE-EEEECCCS--SCEEEEEECTTSSEE
T ss_pred EEEeCCCc-EE--EEEecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCe-eEEEeCCC--CCEEEEEECCCCCEE
Confidence 99996543 22 2334567899999999 788899999999999999987554 34444433 689999999999999
Q ss_pred EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 252 VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
++++.+ |.+++||. +++....+. .|...|.+++|+|++++|++++.|+.|++||. +++.+..+
T Consensus 360 ~~~~~d-------------g~v~~~~~-~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~ 422 (577)
T 2ymu_A 360 ASASDD-------------KTVKLWNR-NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL 422 (577)
T ss_dssp EEEETT-------------SEEEEEET-TCCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEE
T ss_pred EEEeCC-------------CEEEEEcC-CCCEEEEec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEe
Confidence 999988 59999996 456666554 67788999999999999999999999999995 57888899
Q ss_pred eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEE
Q 012699 332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAP 411 (458)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~ 411 (458)
.+|...|.+++|+|++++|++++.|+.|++||... +.... ...+...+.+++|+|++++|++++.|+.|+
T Consensus 423 ~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~---------~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQT---------LTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEE---------EECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred cCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEE---------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 99999999999999999999999999999999753 22211 124677899999999999999999999999
Q ss_pred EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+|+.. ++.+..+.+|...|++++|+|++++||+++.||.|++||++
T Consensus 493 iw~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 493 LWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEETT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEcCC-CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 99964 44566677999999999999999999999999999999863
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-53 Score=412.63 Aligned_cols=399 Identities=17% Similarity=0.268 Sum_probs=328.8
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
......|...|.++++ ++++++|++++.|+.+++|+.......... ........+++++++.++++++.|+.++
T Consensus 173 ~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~-----~~~~~v~~~~~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 173 LQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLWNRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASASDDKTVK 246 (577)
T ss_dssp EEEEECCSSCEEEEEE-CTTSSCEEEEETTSEEEEECTTSCEEEEEE-----CCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred eeeccCCCcceeeeee-cCCCCEEEEEcCCCEEEEEeCCCcEEEEEe-----cCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 4456779999999999 999999999999999999996543222111 1223344577777889999999999999
Q ss_pred ccccccccCCcc-cceeeeccCCCCcCCCcceeccCCCeeee-----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699 97 PSKLEFEDVGAG-DIIQMFNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLGHTSPISCCRFSSSGNNIASASVDGT 170 (458)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 170 (458)
+|+......... .........+|+|+++.++++..++.+.+ +.+..+.+|...|.+++|+|++++|++++.|++
T Consensus 247 ~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 247 LWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp EECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 999653221110 01112345578999999999998888876 456788999999999999999999999999999
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699 171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
|++||....... ....+...+.+++|+ +++.++++++.||.+++||. +++.+..+..+. ..|.+++|+|+++.
T Consensus 327 i~~w~~~~~~~~---~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~--~~v~~~~~s~dg~~ 399 (577)
T 2ymu_A 327 VKLWNRNGQHLQ---TLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFSPDGQT 399 (577)
T ss_dssp EEEEETTSCEEE---EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--SCEEEEEECTTSSC
T ss_pred EEEEeCCCCeeE---EEeCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--CCeEEEEECCCCCE
Confidence 999998654332 234567889999999 78899999999999999995 456666666554 68999999999999
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 330 (458)
+++++.+ +.|++||.. ++....+. .|...|.+++|+|++++|++++.|+.|++||. +++.+..
T Consensus 400 l~~~~~d-------------~~v~~~~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~ 462 (577)
T 2ymu_A 400 IASASDD-------------KTVKLWNRN-GQLLQTLT--GHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQT 462 (577)
T ss_dssp EEEEETT-------------SEEEEECTT-CCEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEE
T ss_pred EEEEeCC-------------CEEEEEeCC-CCEEEEec--CCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEE
Confidence 9999988 499999964 45655554 67788999999999999999999999999996 5778888
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699 331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA 410 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i 410 (458)
+.+|...|.+++|+|++++|++++.|+.|++||... +.... ...|...|.+++|+|+|++|++++.|+.|
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~~~~~---------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v 532 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT---------LTGHSSSVRGVAFSPDGQTIASASDDKTV 532 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-CEEEE---------EECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-CEEEE---------EeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence 999999999999999999999999999999999643 22221 22577889999999999999999999999
Q ss_pred EEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 411 PIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 411 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
++||.. ++.+..+.+|...|++++|+||+++|+|++.|++|++||
T Consensus 533 ~lwd~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 533 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999975 446666779999999999999999999999999999997
No 5
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-50 Score=402.26 Aligned_cols=429 Identities=9% Similarity=0.012 Sum_probs=313.1
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
...||...|++++| +|++++||+|+.|++++||+....+......+ ......+.+++ +++|++++.|+++++|
T Consensus 12 ~~~gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~-----~~~V~~l~fsp-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 12 NKYGMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEVVIKLED-----RSAIKEMRFVK-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EEEECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEEEEECSS-----CCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred cccCCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCC-----CCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence 44589999999999 99999999999999999999876654322222 23344566666 6699999999999999
Q ss_pred ccccccCC-cccceeeeccCCCCcCCCcceeccCCCeeeeeee-----------------eeeccCCCCeEEEEeCCC-C
Q 012699 99 KLEFEDVG-AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFL-----------------ETFLGHTSPISCCRFSSS-G 159 (458)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~-~ 159 (458)
++...... ...........+|+|+++.++++..++.++++.+ ..+.+|.++|++++|+|+ +
T Consensus 85 d~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 85 SLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp ETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred ECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 98753311 0001112345679999999999999998887322 345789999999999996 5
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCcccc----------------ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNAT----------------IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
..|++|+.||+| +||+.+++....... ..|...|.+++|+ +++.+|++++.||.|++||+++
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEETTT
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCC
Confidence 789999999999 999988764321111 1123679999999 6789999999999999999999
Q ss_pred Cceeee--cc---CC-----------CCCCceeeeeec----CCC-CeEEEeecccCC----------------------
Q 012699 224 KRVVCD--LN---TT-----------DAFPSVLDLKCS----PVE-PIFVSAAASRRY---------------------- 260 (458)
Q Consensus 224 ~~~~~~--~~---~~-----------~~~~~v~~~~~~----~~~-~~~~~~~~~~~~---------------------- 260 (458)
++++.. +. .+ .+...|.+++|+ |++ ..+++++.+...
T Consensus 243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 322 (902)
T 2oaj_A 243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE 322 (902)
T ss_dssp CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence 887653 21 11 123469999995 443 355555433100
Q ss_pred -------------------C----------------------CcceeeccceeEEEEECCCCceeEE-----ee------
Q 012699 261 -------------------G----------------------SSNIYSWGFASLTVWNMKTWKAMTV-----LP------ 288 (458)
Q Consensus 261 -------------------~----------------------~~~~~~~~~g~i~i~d~~~~~~~~~-----~~------ 288 (458)
+ ..++....+|.|++||+.++..... ..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~ 402 (902)
T 2oaj_A 323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP 402 (902)
T ss_dssp HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence 0 0122333458899999977643221 01
Q ss_pred ----------------------------cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee--eee----e--
Q 012699 289 ----------------------------LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI--TGW----P-- 332 (458)
Q Consensus 289 ----------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~----~-- 332 (458)
+.+|...+.+++|+|++++|++|+.|++|++||+.++... ..+ .
T Consensus 403 ~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~ 482 (902)
T 2oaj_A 403 LATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRT 482 (902)
T ss_dssp BEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHH
T ss_pred CeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhh
Confidence 1223333444556789999999999999999999887432 111 1
Q ss_pred ---CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE------------eec----------------------
Q 012699 333 ---AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW------------TRN---------------------- 375 (458)
Q Consensus 333 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~---------------------- 375 (458)
+|...|.+++|+|++++||+|+.||+|++||+.+.+.... ...
T Consensus 483 ~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (902)
T 2oaj_A 483 LNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVR 562 (902)
T ss_dssp TTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCS
T ss_pred cCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCC
Confidence 7899999999999999999999999999999986531000 000
Q ss_pred --CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----cccC-CCCCcEEEEEEC-----CCC--
Q 012699 376 --CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----MRTL-PHGAAITTVDWH-----PTL-- 440 (458)
Q Consensus 376 --~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----~~~~-~h~~~v~~~~~~-----~~~-- 440 (458)
.........|...|++++||||| +||+|+.|++|++||+++...+ ..+. +|...|++++|+ |||
T Consensus 563 ~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~ 641 (902)
T 2oaj_A 563 QGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYS 641 (902)
T ss_dssp EEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSE
T ss_pred CccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCc
Confidence 00012234588899999999999 9999999999999999876433 2333 899999999999 886
Q ss_pred -CeEEEecCCCcEEEEeC
Q 012699 441 -PMFLTGSADHSVQVMSL 457 (458)
Q Consensus 441 -~~l~s~~~dg~v~iw~l 457 (458)
++|++|+.|++|++||+
T Consensus 642 ~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 642 SILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEETTSEEEEEEE
T ss_pred ceEEEEEecCCcEEEEEE
Confidence 79999999999999997
No 6
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-49 Score=352.10 Aligned_cols=293 Identities=15% Similarity=0.282 Sum_probs=259.2
Q ss_pred eeeeeccCCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 139 FLETFLGHTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
..+.+++|.+.|++++|+|+ +++|+||+.|++|++|++.............|...|.+++|+ +++.++++++.|+
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~-~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS-HTLPIAASSSLDA 102 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-SSSSEEEEEETTS
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC-CCCCEEEEEeCCC
Confidence 45677899999999999985 678999999999999999876543333345677899999999 7788999999999
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
+|++||+.+++.+..+..+. ..+..++|+|+++.+++++.+ |.+++||+++++....+. .+..
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~~g~~d-------------g~v~i~~~~~~~~~~~~~--~~~~ 165 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHV-------------GKVNIFGVESGKKEYSLD--TRGK 165 (321)
T ss_dssp EEEEEETTTTEEEEEEECCT--TCCCCEEECTTSSEEEEECTT-------------SEEEEEETTTCSEEEEEE--CSSS
T ss_pred cEEEEECCCCCEEEEEeCCC--ccEEEEEECCCCCEEEEEcCC-------------CcEEEEEcCCCceeEEec--CCCc
Confidence 99999999999888876654 578899999999999999988 599999999988877765 4567
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
.+.+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+++......
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~-- 243 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT-- 243 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE--
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987654332
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
...|...|.+++|+|++++|++++.|++|++||+.+...+..+.+|...|++++|+|++++|++++.||.|+|
T Consensus 244 -------~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 244 -------LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp -------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred -------EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 2357778999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred EeCC
Q 012699 455 MSLS 458 (458)
Q Consensus 455 w~l~ 458 (458)
||+.
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9974
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-48 Score=378.11 Aligned_cols=410 Identities=13% Similarity=0.093 Sum_probs=314.7
Q ss_pred HhhccccCCCcc-eeeeeeccC--CCceeeeeecCcceEEeccccc--------cccccceeeeeccCCceeeeeCCccc
Q 012699 15 AQLSRLKNNSET-IKYANIGQT--KNSTLASGVNEESLLLSTNSSE--------ACATTATHMGSAEMGQTWASSRPALS 83 (458)
Q Consensus 15 ~~~~~l~~h~~~-i~~~~~~s~--~~~~l~s~~~d~~~~iw~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (458)
+.++.+.+|... |++++| +| ++++|++|+.|+++++|+...+ .....+. ........+.+++++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~-sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~ 128 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ----VLAGPISDISWDFEG 128 (615)
T ss_dssp CSEEEECTTTTSCEEEEEE-CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE----CCSSCEEEEEECTTS
T ss_pred ccceEEecCCCceEEEEEE-CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh----cccccEEEEEEeCCC
Confidence 466789999999 999999 99 9999999999999999999755 1111111 123344556667778
Q ss_pred eeEeeccCC----CcccccccccccCCcccceeeeccCCCCcCCC-cceeccCCCeeee------eeeeeeccCCC---C
Q 012699 84 RFATNMSGN----DSISPSKLEFEDVGAGDIIQMFNDGLYTENGR-DAQGEEDFPEVKV------DFLETFLGHTS---P 149 (458)
Q Consensus 84 ~~l~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~------~~~~~~~~h~~---~ 149 (458)
+++++++.+ +.+.+|+...................|+|+++ .++++..++.+.+ +.+..+.+|.. .
T Consensus 129 ~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~ 208 (615)
T 1pgu_A 129 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF 208 (615)
T ss_dssp SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC
T ss_pred CEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCce
Confidence 888888877 68888984322211112222345667999998 6888888888877 46678889999 9
Q ss_pred eEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 150 ISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 150 v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
|.+++|+|+ +++|++++.||.|++||+.+++...... . .+...|.+++|+ ++.+|++++.||.|++||+++++
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec-ccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCc
Confidence 999999999 9999999999999999998877653221 2 677899999998 78899999999999999999999
Q ss_pred eeeeccCCC--CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec--------------
Q 012699 226 VVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL-------------- 289 (458)
Q Consensus 226 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~-------------- 289 (458)
....+..+. ....+..+.+. ++..+++++.++ .|++||+.+++....+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g-------------~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~ 351 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG-------------TLNFYELGHDEVLKTISGHNKGITALTVNPLI 351 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS-------------CEEEEETTEEEEEEEECCCSSCEEEEETTTTE
T ss_pred EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC-------------CEEEEECCCCcEEEEEeCCCCCEEEEEecCcE
Confidence 888776652 12456777775 888888888774 555555444333222210
Q ss_pred -----------------CCC------------------------------------------------------------
Q 012699 290 -----------------GED------------------------------------------------------------ 292 (458)
Q Consensus 290 -----------------~~~------------------------------------------------------------ 292 (458)
..|
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 112
Q ss_pred --------------CCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 293 --------------PPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 293 --------------~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
...+.+++|+ +++|++++. |+.|++||+.+++.. ..+..|...|.+++|+|++++|++++.|
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 509 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM 509 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCC
Confidence 2234444444 556666776 777777777766554 6667899999999999999999999999
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCC-CCCceeEEEEcc----------CCCEEEEEeCCccEEEEEccCC-Cccccc
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPES-SKSCRHEMALDV----------NGRRLLVTSGSVRAPIYQVRGH-ASGMRT 424 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~----------~g~~l~~~~~~~~i~i~~~~~~-~~~~~~ 424 (458)
|.|++||+.+.+.... ... |...|.+++|+| ++++|++++.|+.|++|++.+. .....+
T Consensus 510 g~i~iw~~~~~~~~~~---------~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 510 GKILLYDLQSREVKTS---------RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp SCEEEEETTTTEEEEC---------CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred CeEEEeeCCCCcceeE---------eecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 9999999987654321 223 778899999999 9999999999999999999987 555666
Q ss_pred CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+|...|++++|+|+++ |++++.||.|++|+++
T Consensus 581 ~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 581 NAHKDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred hcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 78999999999999999 9999999999999985
No 8
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-48 Score=358.18 Aligned_cols=289 Identities=18% Similarity=0.312 Sum_probs=261.5
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
...+.+|.++|++++|+|++++|++|+.||+|++||+.+++... ....|...|.+++|+ +++.+|++|+.|++|++|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--~l~~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCCCEE
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--EEeccCCcEEEEEEc-CCCCEEEEEeCCCeEEEE
Confidence 34678999999999999999999999999999999999887653 344577899999999 678899999999999999
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
|+.+++++..+..+. ..|.+++|+|++..+++++.| +.|++||++++.+...+. +|...|.++
T Consensus 178 d~~~~~~~~~~~~h~--~~V~~v~~~p~~~~l~s~s~D-------------~~i~~wd~~~~~~~~~~~--~h~~~v~~~ 240 (410)
T 1vyh_C 178 DFQGFECIRTMHGHD--HNVSSVSIMPNGDHIVSASRD-------------KTIKMWEVQTGYCVKTFT--GHREWVRMV 240 (410)
T ss_dssp ETTSSCEEECCCCCS--SCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEE--CCSSCEEEE
T ss_pred eCCCCceeEEEcCCC--CCEEEEEEeCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEe--CCCccEEEE
Confidence 999999888887665 689999999999999999998 599999999999888775 677889999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC--------------------CCEEEEecCCCeE
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD--------------------ETSIFSLGSDGKI 359 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i 359 (458)
.++|++.+|++|+.|+.|++||+++++....+.+|...|.+++|+|+ +.+|++++.|+.|
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i 320 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999999996 6789999999999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
++||++++...... ..|...|.+++|+|+|++|++++.|+.|++||+.+......+.+|...|++++|+|+
T Consensus 321 ~iwd~~~~~~~~~~---------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 391 (410)
T 1vyh_C 321 KMWDVSTGMCLMTL---------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT 391 (410)
T ss_dssp EEEETTTTEEEEEE---------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSS
T ss_pred EEEECCCCceEEEE---------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCC
Confidence 99999976544322 247778999999999999999999999999999988877778899999999999999
Q ss_pred CCeEEEecCCCcEEEEeC
Q 012699 440 LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 440 ~~~l~s~~~dg~v~iw~l 457 (458)
+++|++|+.||+|+||++
T Consensus 392 ~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 392 APYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSCEEEEETTSEEEEEC-
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 999999999999999986
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.2e-48 Score=349.00 Aligned_cols=291 Identities=16% Similarity=0.237 Sum_probs=253.8
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..+++++|.++|++++|+|++++|++|+.||+|++||+.+++... ....+...|.+++|+ ++++++++++.|+.++
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--AIPLRSSWVMTCAYA-PSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--EEECSSSCEEEEEEC-TTSSEEEEEETTCEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--EeecCCccEEEEEEC-CCCCEEEEEeCCCeEE
Confidence 3677899999999999999999999999999999999998876543 234567789999999 6889999999999999
Q ss_pred EEEcCCCc----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 218 AWNVDAKR----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 218 ~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+|++.++. ....+..+ ...+.++.|++++. +++++.| +.|++||+++++....+. +|.
T Consensus 123 iw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~s~d-------------~~i~~wd~~~~~~~~~~~--~h~ 184 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGH--TGYLSCCRFLDDNQ-IVTSSGD-------------TTCALWDIETGQQTTTFT--GHT 184 (340)
T ss_dssp EEETTTCSBSCEEEEEEECC--SSCEEEEEEEETTE-EEEEETT-------------SCEEEEETTTTEEEEEEC--CCS
T ss_pred EEECccCCCcceeEEEecCC--CccEEEEEECCCCc-EEEEECC-------------CcEEEEECCCCcEEEEEc--CCC
Confidence 99998753 33334333 36899999998876 6777777 599999999988877764 788
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
..|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++.......
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876544321
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
........+.+++|+|+|++|++|+.|+.|++||+........+.+|...|++++|+|++++|++|+.||.|+
T Consensus 265 -------~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 265 -------SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp -------CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred -------ccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 1123345699999999999999999999999999998877777789999999999999999999999999999
Q ss_pred EEe
Q 012699 454 VMS 456 (458)
Q Consensus 454 iw~ 456 (458)
|||
T Consensus 338 iWd 340 (340)
T 1got_B 338 IWN 340 (340)
T ss_dssp EEC
T ss_pred ecC
Confidence 997
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-48 Score=409.93 Aligned_cols=419 Identities=16% Similarity=0.203 Sum_probs=343.9
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
.+.+|...|++++| +++|++|++|+.|+++++|+..++.....+. ...+....+.+++++.++++++.|+++++|
T Consensus 610 ~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACF-SQDGQRIASCGADKTLQVFKAETGEKLLDIK----AHEDEVLCCAFSSDDSYIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EEecccccEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCEEEEec----cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 56789999999999 9999999999999999999999886553222 123344557778889999999999999999
Q ss_pred ccccccCCc--ccceeeeccCCCCc--CCCcceeccCCCeeee------eeeeeeccCCCCeEEEEeCCCCCEEEEEeCC
Q 012699 99 KLEFEDVGA--GDIIQMFNDGLYTE--NGRDAQGEEDFPEVKV------DFLETFLGHTSPISCCRFSSSGNNIASASVD 168 (458)
Q Consensus 99 ~~~~~~~~~--~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 168 (458)
++....... ...........|+| ++..+++++.++.+.+ ..+..+.+|.+.|++++|+|++++|++++.|
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 987533110 00111223456888 4557888888888877 3567788999999999999999999999999
Q ss_pred CcEEEEecCCCCCCCcc-----------------------------------------------------ccccCCCceE
Q 012699 169 GTVRIWTYDSSTPASRN-----------------------------------------------------ATIYCGTEIM 195 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~-----------------------------------------------------~~~~~~~~v~ 195 (458)
|+|++||+.++...... ....+...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 99999998765321100 0013456788
Q ss_pred EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC----------------
Q 012699 196 SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR---------------- 259 (458)
Q Consensus 196 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------------- 259 (458)
+++|+ +++.++++++.||.|++||+.++.....+..+. ..|.+++|+|++..+++++.++.
T Consensus 845 ~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~ 921 (1249)
T 3sfz_A 845 YCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIV 921 (1249)
T ss_dssp EEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSS
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeec
Confidence 99999 688899999999999999999999888877655 78999999999999999987742
Q ss_pred --------------------------------------------------CCCcceeeccceeEEEEECCCCceeEEeec
Q 012699 260 --------------------------------------------------YGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 260 --------------------------------------------------~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
.+..++.+..+|.|++||+.+++....+
T Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~-- 999 (1249)
T 3sfz_A 922 LKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG-- 999 (1249)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--
T ss_pred ccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--
Confidence 1223455667789999999888877655
Q ss_pred CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
..|...|.+++|+|++++|++++.||.|++||+.+++... +..|...|.+++|+|++ .+++++.|+.|++||+.++..
T Consensus 1000 ~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCC
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCce
Confidence 4778889999999999999999999999999999887664 56899999999999976 678899999999999987654
Q ss_pred eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
.... ..+...+.+++|+|++++|++++.|+.|++||+.+......+.+|...|++++|+|++++|++++.|
T Consensus 1078 ~~~~---------~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1078 ERDF---------TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp CEEE---------ECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eEEE---------cccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 3322 2466779999999999999999999999999999988888888999999999999999999999999
Q ss_pred CcEEEEeCC
Q 012699 450 HSVQVMSLS 458 (458)
Q Consensus 450 g~v~iw~l~ 458 (458)
|.|++||+.
T Consensus 1149 g~i~vwd~~ 1157 (1249)
T 3sfz_A 1149 GEIRIWNVS 1157 (1249)
T ss_dssp SCCCEEESS
T ss_pred CEEEEEECC
Confidence 999999974
No 11
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.4e-49 Score=413.56 Aligned_cols=436 Identities=11% Similarity=0.119 Sum_probs=345.9
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc-------ccceeeeeccCC---------------
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA-------TTATHMGSAEMG--------------- 72 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~-------~~~~~~~~~~~~--------------- 72 (458)
+.+..+.+|...|.+++| +++|++|++|+.|+++++||..++... ..+..+.|++++
T Consensus 648 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAF-SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp CEEEEECCCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred CEEEEeccCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 346788899999999999 999999999999999999999877654 233345555421
Q ss_pred ------------------ceeeeeCCccceeEeeccCCCcccccccccccCCcc--------------------------
Q 012699 73 ------------------QTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAG-------------------------- 108 (458)
Q Consensus 73 ------------------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~-------------------------- 108 (458)
....+.+++++.++++++.|+++++|++........
T Consensus 727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 122345566788999999999999999864321000
Q ss_pred -------------------------------cceeeeccCCCCcCCCcceeccCCCeeee------eeeeeeccCCCCeE
Q 012699 109 -------------------------------DIIQMFNDGLYTENGRDAQGEEDFPEVKV------DFLETFLGHTSPIS 151 (458)
Q Consensus 109 -------------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~h~~~v~ 151 (458)
..........|+|+++.++++..++.+.+ ..+..+.+|.+.|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 00001122346777777777777777766 45677889999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC-----------------------------------ccccccCCCceEE
Q 012699 152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPAS-----------------------------------RNATIYCGTEIMS 196 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----------------------------------~~~~~~~~~~v~~ 196 (458)
+++|+|++++|++++.||+|++|++.+..... ..........+.+
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999999999975321100 0011123457899
Q ss_pred EEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCC----------------
Q 012699 197 LEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRY---------------- 260 (458)
Q Consensus 197 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------- 260 (458)
++|+ +++.++++|+.+|.|++||+.+++....+..+. ..|.+++|+|+++.+++++.++..
T Consensus 967 ~~~s-p~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1043 (1249)
T 3sfz_A 967 CCLS-PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK--KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAH 1043 (1249)
T ss_dssp EEEC-TTSSEEEEEETTSCCEEEETTTTSCEEECCCCS--SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCC
T ss_pred EEEc-CCCCEEEEEcCCCCEEEEEcCCCceeeecccCC--CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecC
Confidence 9999 788899999999999999999999888777655 689999999999999999877521
Q ss_pred -----------CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee
Q 012699 261 -----------GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT 329 (458)
Q Consensus 261 -----------~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~ 329 (458)
+..++.+..+|.|++||+.+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++++.
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~ 1121 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT--CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLH 1121 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE--CCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSB
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc--ccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceee
Confidence 2234556677899999999988887775 577789999999999999999999999999999999999
Q ss_pred eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCcc
Q 012699 330 GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVR 409 (458)
Q Consensus 330 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~ 409 (458)
.+.+|...|++++|+|++++|++++.||.|++||+.++.................+...|.+++|+|+|++|++++ |.
T Consensus 1122 ~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~ 1199 (1249)
T 3sfz_A 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY 1199 (1249)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS
T ss_pred eeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce
Confidence 9999999999999999999999999999999999997654332111111112245778899999999999999885 89
Q ss_pred EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 410 APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 410 i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|++||+.++.....+..|...|++++|+|++++|++++.||.|++|++.
T Consensus 1200 v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1200 LKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp EEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred EEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 9999999998888888899999999999999999999999999999973
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-47 Score=343.85 Aligned_cols=292 Identities=16% Similarity=0.255 Sum_probs=253.7
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..+.+.+|.++|++++|+|++++|+||+.||+|++||..++.... ....+...|.+++|+ +++.++++++.|+.++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~~~~~~v~~~~~s-p~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AVTMPCTWVMACAYA-PSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEECSSSCCCEEEEC-TTSSEEEEESTTSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EEecCCCCEEEEEEC-CCCCEEEEeeCCCCEE
Confidence 3677899999999999999999999999999999999988776543 233456789999999 7889999999999999
Q ss_pred EEEcCCCc------eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 218 AWNVDAKR------VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 218 ~wd~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
+|++.... ....+.. |...+.++.|+|++..+++++.| |.|++||+++++....+. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~D-------------~~v~lwd~~~~~~~~~~~--~ 194 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASGD-------------GTCALWDVESGQLLQSFH--G 194 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEE--CSSCEEEEEECSSSSEEEEEETT-------------SEEEEEETTTCCEEEEEE--C
T ss_pred EEEEeccccccccccceeeec--cCCcEEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCeEEEEEc--C
Confidence 99986542 2222333 33689999999999999999988 599999999999888775 6
Q ss_pred CCCcEEEEEEcc--CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 292 DPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 292 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
|...|.+++|+| ++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||++....
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~ 274 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 778899999988 478999999999999999999999999999999999999999999999999999999999987644
Q ss_pred eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
.... ........+.+++|+|+|++|++++.|+.|++||+.++..+..+.+|...|++++|+|++++|++|+.|
T Consensus 275 ~~~~-------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 275 VAIY-------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEEE-------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEE-------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 3221 112234568899999999999999999999999998887777788999999999999999999999999
Q ss_pred CcEEEEe
Q 012699 450 HSVQVMS 456 (458)
Q Consensus 450 g~v~iw~ 456 (458)
|+|+||+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999996
No 13
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.8e-47 Score=370.62 Aligned_cols=415 Identities=11% Similarity=0.136 Sum_probs=323.1
Q ss_pred ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccc----cccccceeeeeccCCc-eeeeeCCc--cceeEeeccCC
Q 012699 20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSE----ACATTATHMGSAEMGQ-TWASSRPA--LSRFATNMSGN 92 (458)
Q Consensus 20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~ 92 (458)
-..|...|++++| +|+|++|++++ ++.+.+|+...+ .....+ . ..... ...+.+++ +++++++++.|
T Consensus 14 ~~~~~~~v~~~~~-spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~---~-~h~~~~v~~~~~sp~~~~~~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSY-DPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQF---T-GHGSSVVTTVKFSPIKGSQYLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEE-ETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEE---C-TTTTSCEEEEEECSSTTCCEEEEEETT
T ss_pred CCCccCceeEEEE-CCCCCEEEEec-CCeEEEEECCCCCCccccceEE---e-cCCCceEEEEEECcCCCCCEEEEecCC
Confidence 3568999999999 99999999998 889999999876 332111 1 11223 44566777 78999999999
Q ss_pred Ccccccccccc------cCCcccc----eeeeccCCCCcCCCcceeccCC----Ceeee----eeeeeeccCCCCeEEEE
Q 012699 93 DSISPSKLEFE------DVGAGDI----IQMFNDGLYTENGRDAQGEEDF----PEVKV----DFLETFLGHTSPISCCR 154 (458)
Q Consensus 93 ~~i~~~~~~~~------~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~----~~~~~----~~~~~~~~h~~~v~~~~ 154 (458)
+.+++|++... ....... .......+|+|+++.++++..+ ..+.+ +.+..+.+|...|.+++
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 167 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEE
Confidence 99999999642 1111111 1223456799999999888765 23333 56778889999999999
Q ss_pred eCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 155 FSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 155 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
|+|+++ ++++++.|+.|++||+.+.+... ....+.. .|.+++|+|.++++|++++.||.|++||+.+++.+..+
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 245 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence 999998 79999999999999988766543 2334556 89999999433899999999999999999999988887
Q ss_pred cCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC--CCCcEEEEEEccCCC
Q 012699 231 NTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGK 306 (458)
Q Consensus 231 ~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~ 306 (458)
... .+...+.+++|+ ++..+++++.+ |.|++||+++++....+.... ....+.++.|+ +++
T Consensus 246 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 310 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWL-DSQKFATVGAD-------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNG 310 (615)
T ss_dssp CBTTBCCCSCEEEEEES-SSSEEEEEETT-------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETT
T ss_pred cccccccCCceEEEEEc-CCCEEEEEcCC-------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCC
Confidence 321 233789999999 99999999988 599999999999888876432 23567888885 889
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC---------------------------------CCEEEEe
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD---------------------------------ETSIFSL 353 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~l~~~ 353 (458)
++++++.||.|++||+.+++.+..+.+|...|.+++| |+ +..|+++
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~ 389 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 389 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence 9999999999999999998888888777777766666 54 5667777
Q ss_pred cCCCeEEEEeccCCCe---------------------------------e------------------------------
Q 012699 354 GSDGKIIEWSLQNQGQ---------------------------------V------------------------------ 370 (458)
Q Consensus 354 ~~dg~i~iwd~~~~~~---------------------------------~------------------------------ 370 (458)
+.|+.+++||+.+... .
T Consensus 390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 469 (615)
T ss_dssp ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE
Confidence 7777777777653110 0
Q ss_pred -EEeecCCcc--cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECC--------
Q 012699 371 -LWTRNCSRF--CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHP-------- 438 (458)
Q Consensus 371 -~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~-------- 438 (458)
.+....... .....+...+.+++|+|++++|++++.|+.|++|++.+.+.+..+.+ |...|++++|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 000000000 33456788899999999999999999999999999999887777777 999999999999
Q ss_pred --CCCeEEEecCCCcEEEEeCC
Q 012699 439 --TLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 439 --~~~~l~s~~~dg~v~iw~l~ 458 (458)
++++|++++.||.|++|+++
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESS
T ss_pred ccCCCEEEEEcCCCcEEEEECC
Confidence 99999999999999999974
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-47 Score=347.04 Aligned_cols=301 Identities=16% Similarity=0.240 Sum_probs=251.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
.+.++|.+|.++|++++|+|++++|++|+.||+|++||+.+++... ....|...|.+++|+ +++++|++|+.|+.++
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--~~~~h~~~v~~~~~s-~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--AIKLHCPWVMECAFA-PNGQSVACGGLDSACS 133 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--EEECCCTTCCCCEEC-TTSSEEEECCSSSCCE
T ss_pred EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--EEecCCCCEEEEEEC-CCCCEEEEeeCCCcEE
Confidence 4678899999999999999999999999999999999998776543 334567789999999 7889999999999999
Q ss_pred EEEcCCCce-------eeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec
Q 012699 218 AWNVDAKRV-------VCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 218 ~wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
+||+.+... ...+. .|...+.++.|.|++ ..+++++.| +.|++||+++++....+..
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~--gh~~~v~~~~~~~~~~~~l~s~s~D-------------~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLT--GHKGYASSCQYVPDQETRLITGSGD-------------QTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCC--CCSSCCCCCBCCSSSSSCEEEECTT-------------SCEEEECTTTCCEEEEECC
T ss_pred EEECCCCccccCCccceeecc--CCCcceEEEEEecCCCCEEEEECCC-------------CcEEEEEcCCCcEEEEeec
Confidence 999975421 12233 334678899999975 468888888 5999999999988876632
Q ss_pred ---CCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 290 ---GEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 290 ---~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
.+|...|.+++|+| ++.+|++|+.|+.|++||++ .++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~ 278 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence 46778899999987 78999999999999999998 45778889999999999999999999999999999999999
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc----CCCCCcEEEEEECCCC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT----LPHGAAITTVDWHPTL 440 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~----~~h~~~v~~~~~~~~~ 440 (458)
+++.......... .....+...+.+++|+|+|++|++|+.||.|++||+...+....+ .+|...|++++|+|++
T Consensus 279 ~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 356 (380)
T 3iz6_a 279 RTGHQLQVYNREP--DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356 (380)
T ss_dssp TTTEEEEEECCCC--SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred CCCcEEEEecccc--cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence 9865543322111 111223345899999999999999999999999999877655444 4799999999999999
Q ss_pred CeEEEecCCCcEEEEeCC
Q 012699 441 PMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l~ 458 (458)
++|++|+.||+|+||+++
T Consensus 357 ~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 357 SALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEECC
T ss_pred CEEEEeeCCCCEEEEecC
Confidence 999999999999999974
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-46 Score=345.30 Aligned_cols=290 Identities=17% Similarity=0.273 Sum_probs=254.9
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
...|.+|...|++++| +|++++|++|+.|+++++||.+++.
T Consensus 101 ~~~l~gh~~~V~~~~~-~p~~~~l~s~s~Dg~i~vwd~~~~~-------------------------------------- 141 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGD-------------------------------------- 141 (410)
T ss_dssp SCEEECCSSCEEEEEE-CSSSSEEEEEESSSCEEEEETTTCC--------------------------------------
T ss_pred eEeecccCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc--------------------------------------
Confidence 3467789999999999 9999999999999999999876551
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
..+.+.+|.+.|++++|+|++++|++|+.|++|++||+
T Consensus 142 ------------------------------------------~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 142 ------------------------------------------FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp ------------------------------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ------------------------------------------EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 23356789999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
.+.+... ....|...|.+++|+ +++.+|++++.|++|++||++++.++..+..+. ..+..+.++|++..+++++.
T Consensus 180 ~~~~~~~--~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~g~~l~s~s~ 254 (410)
T 1vyh_C 180 QGFECIR--TMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSN 254 (410)
T ss_dssp TSSCEEE--CCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSEEEEEET
T ss_pred CCCceeE--EEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--ccEEEEEECCCCCEEEEEcC
Confidence 8776543 234577899999999 678899999999999999999999988887665 67999999999999999999
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--------------------CCEEEEEecCCe
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--------------------GKILAASAVDGM 316 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~dg~ 316 (458)
| |.|++||+.+++....+. .|...|.+++|+|+ +.+|++|+.|+.
T Consensus 255 D-------------~~v~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 255 D-------------QTVRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp T-------------SCEEEEETTTCCEEEEEC--CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred C-------------CeEEEEECCCCceeeEec--CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 8 599999999988877664 67788999999996 678999999999
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
|++||+++++++..+.+|...|.+++|+|++++|++++.|+.|++||+.+.+.... ...|...|.+++|+|
T Consensus 320 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~---------~~~h~~~v~~l~~~~ 390 (410)
T 1vyh_C 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT---------LNAHEHFVTSLDFHK 390 (410)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE---------EECCSSCEEEEEECS
T ss_pred EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE---------EcCCCCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999987654332 235777899999999
Q ss_pred CCCEEEEEeCCccEEEEEcc
Q 012699 397 NGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 397 ~g~~l~~~~~~~~i~i~~~~ 416 (458)
++++|++|+.|+.|++|+++
T Consensus 391 ~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSCEEEEETTSEEEEEC--
T ss_pred CCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999863
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.8e-46 Score=335.34 Aligned_cols=305 Identities=15% Similarity=0.235 Sum_probs=247.3
Q ss_pred eeeeeeccCCC-CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc-ccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 138 DFLETFLGHTS-PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN-ATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 138 ~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
..+.++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++...... ....|...|.+++|+ +++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEEC-CCCCEEEEEECCCc
Confidence 47788999988 9999999999999999999999999999876532211 223577899999999 68899999999999
Q ss_pred EEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCCC
Q 012699 216 IKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGED 292 (458)
Q Consensus 216 i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~~ 292 (458)
+++||+..+. ....+..+ ...|.+++|+|+++.+++++.| +.|++||+++..... ...+..|
T Consensus 85 v~iw~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD-------------KSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp EEEEEECCC-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETT-------------SCEEEEEECTTSCEEEEEEECCC
T ss_pred EEEEEccCCCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECC-------------CeEEEEECCCCCCeEEEEEecCc
Confidence 9999998775 34455544 4789999999999999999998 599999998765432 2234678
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
...|.+++|+|++++|++|+.|+.|++||.++++ +...+.+|...|.+++|+|++++|++++.|++|++||.......
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 8899999999999999999999999999998765 45678899999999999999999999999999999997543211
Q ss_pred EEeecC------Ccc-cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc---------ccCCCCCcEEEE
Q 012699 371 LWTRNC------SRF-CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM---------RTLPHGAAITTV 434 (458)
Q Consensus 371 ~~~~~~------~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~---------~~~~h~~~v~~~ 434 (458)
...... ... .....+...|..++|+|++..|++++.|+.|++|+........ ...+|...|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 000000 000 0011366789999999999999999999999999987653211 123799999999
Q ss_pred EECCCCC-eEEEecCCCcEEEEeCC
Q 012699 435 DWHPTLP-MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 435 ~~~~~~~-~l~s~~~dg~v~iw~l~ 458 (458)
+|+|++. +||+|+.||+|++|++.
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEeCCCceEEEEcCCCCcEEEEEec
Confidence 9999985 99999999999999973
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.4e-46 Score=331.59 Aligned_cols=294 Identities=19% Similarity=0.286 Sum_probs=253.4
Q ss_pred HhhccccCCCcceeeeeeccCC----CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699 15 AQLSRLKNNSETIKYANIGQTK----NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS 90 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~----~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (458)
..++++++|...|.+++| +++ +.+|+||+.|+++++|+...+..
T Consensus 23 ~~~~~~~~H~~~V~~v~~-~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~------------------------------- 70 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAW-GTNKKENSETVVTGSLDDLVKVWKWRDERL------------------------------- 70 (321)
T ss_dssp EEEEETTSSSSCEEEEEE-C-------CEEEEEETTSCEEEEEEETTEE-------------------------------
T ss_pred heeeecccCCCcEEEEEE-ecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------------
Confidence 345678899999999999 764 67899999999999998643310
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT 170 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 170 (458)
.....+.+|...|.+++|+|++.++++++.|++
T Consensus 71 -----------------------------------------------~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 71 -----------------------------------------------DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp -----------------------------------------------EEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred -----------------------------------------------eeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 023356799999999999999999999999999
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699 171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
|++||+.+++... ....+...+.+++|+ +++++|++++.||.|++||+++++....+..+. ..+.+++|+|++++
T Consensus 104 i~lWd~~~~~~~~--~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~--~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 104 IRLWDLENGKQIK--SIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG--KFILSIAYSPDGKY 178 (321)
T ss_dssp EEEEETTTTEEEE--EEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSS--SCEEEEEECTTSSE
T ss_pred EEEEECCCCCEEE--EEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCC--ceEEEEEECCCCCE
Confidence 9999998876543 233456678899999 788999999999999999999998887776654 67999999999999
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG 330 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 330 (458)
+++++.+ |.|++||+++++.+..+. .|...|.+++|+|++++|++|+.|+.|++||+++++....
T Consensus 179 lasg~~d-------------g~i~iwd~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (321)
T 3ow8_A 179 LASGAID-------------GIINIFDIATGKLLHTLE--GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243 (321)
T ss_dssp EEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE
T ss_pred EEEEcCC-------------CeEEEEECCCCcEEEEEc--ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE
Confidence 9999988 599999999998887764 6778899999999999999999999999999999999999
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699 331 WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA 410 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i 410 (458)
+.+|...|.+++|+|++++|++++.|++|++||+.+....... ..+...|.+++|+|++++|++++.|+.|
T Consensus 244 ~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF---------FDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE---------cCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999999999999999999999999999999876544322 2467789999999999999999999999
Q ss_pred EEEEcc
Q 012699 411 PIYQVR 416 (458)
Q Consensus 411 ~i~~~~ 416 (458)
++||..
T Consensus 315 ~vwd~p 320 (321)
T 3ow8_A 315 HIYDCP 320 (321)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 999963
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.8e-45 Score=330.40 Aligned_cols=296 Identities=15% Similarity=0.215 Sum_probs=244.7
Q ss_pred eeeeeeeeeccCCCCeEEEEe-----CC-CCCEEEEEeCCCcEEEEecCCCCCCC-----ccccccCCCceEEEEEecCC
Q 012699 135 VKVDFLETFLGHTSPISCCRF-----SS-SGNNIASASVDGTVRIWTYDSSTPAS-----RNATIYCGTEIMSLEWECKS 203 (458)
Q Consensus 135 ~~~~~~~~~~~h~~~v~~~~~-----~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~ 203 (458)
........+++|.+.|++++| ++ ++++|++|+.|++|++||+...+... ......|...|.+++|+ ++
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~-~~ 87 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS-QE 87 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC-SS
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC-CC
Confidence 344577889999999999999 76 89999999999999999997654211 12234577889999999 67
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
+.++++++.|++|++||+++++....+..+. ..|.+++|+|++..+++++.| +.|++||+.....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~--~~v~~v~~sp~~~~l~s~~~d-------------~~i~~wd~~~~~~ 152 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ--SEVYSVAFSPDNRQILSAGAE-------------REIKLWNILGECK 152 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEEEECCC--SCEEEEEECSSTTEEEEEETT-------------SCEEEEESSSCEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEcCCC--CcEEEEEECCCCCEEEEEcCC-------------CEEEEEeccCCce
Confidence 8899999999999999999999888887665 689999999999999999988 5999999985433
Q ss_pred eEEeecCCCCCcEEEEEEccCC----------CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 284 MTVLPLGEDPPAITSLCFNHNG----------KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
........|...|.+++|+|++ .+|++++.||.|++||. ..+....+.+|...|.+++|+|++++|+++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATG 231 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEE
Confidence 3333334677889999999987 79999999999999994 467778889999999999999999999999
Q ss_pred cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc--cc-------
Q 012699 354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM--RT------- 424 (458)
Q Consensus 354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~--~~------- 424 (458)
+.|+.|++||+.+........ .+...+.+++|+|++++++++ .++.+++|++.+..... .+
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~---------~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREF---------DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEE---------ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred cCCCeEEEEECCCCcccceee---------cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchh
Confidence 999999999996443222111 123459999999999988755 57779999998764332 22
Q ss_pred ----CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 425 ----LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 425 ----~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+|...|++++|+|++++|++|+.||.|++|++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 268889999999999999999999999999996
No 19
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-46 Score=375.29 Aligned_cols=410 Identities=11% Similarity=0.124 Sum_probs=292.9
Q ss_pred cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccc
Q 012699 21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKL 100 (458)
Q Consensus 21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 100 (458)
..|...|.+++| ++ |++|++++.|+++++||...+.....+. ..+....+.+++++.++++++.||++++|++
T Consensus 55 ~~~~~~V~~l~f-sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 55 LEDRSAIKEMRF-VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDI 127 (902)
T ss_dssp CSSCCCEEEEEE-ET-TTEEEEEETTCEEEEEETTTCSEEEEEE-----CSSCEEEEECCTTCSEEEEEETTSCEEEEET
T ss_pred cCCCCCEEEEEE-cC-CCEEEEEECcCeEEEEECCCCcEEEEEc-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 358889999999 88 8899999999999999999876554332 2245567888889999999999999999998
Q ss_pred ccccCCc-------------ccceeeeccCCCCcC-CCcceeccCCCeeee------eeeeeeccC--------------
Q 012699 101 EFEDVGA-------------GDIIQMFNDGLYTEN-GRDAQGEEDFPEVKV------DFLETFLGH-------------- 146 (458)
Q Consensus 101 ~~~~~~~-------------~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~------~~~~~~~~h-------------- 146 (458)
....... ........+.+|+|+ +..++++..++.+ + +.++.+.+|
T Consensus 128 ~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~ 206 (902)
T 2oaj_A 128 DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKT 206 (902)
T ss_dssp TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCT
T ss_pred CCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccc
Confidence 7543210 011123345678896 4678888888887 6 344555555
Q ss_pred ----CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----c-----------cCCCceEEEEEecC---C
Q 012699 147 ----TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----I-----------YCGTEIMSLEWECK---S 203 (458)
Q Consensus 147 ----~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~-----------~~~~~v~~~~~~~~---~ 203 (458)
...|++++|+|+|++|++|+.||+|++||+.+++.+..... . .+...|.+++|++. +
T Consensus 207 ~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 207 NEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp TSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred ccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCC
Confidence 67899999999999999999999999999988765321000 0 12346888888642 1
Q ss_pred -CeEEEEEcCC-----CcEEEEE---------------------------------------------------------
Q 012699 204 -DRLLLIGTAD-----GGIKAWN--------------------------------------------------------- 220 (458)
Q Consensus 204 -~~~l~~~~~d-----g~i~~wd--------------------------------------------------------- 220 (458)
+.++++|+.+ ..+.+|+
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~ 366 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGL 366 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSE
T ss_pred CCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCcee
Confidence 2455555443 1444444
Q ss_pred --------------cCCCceeee-------ccCC--------------------------------CCCCceeeeeecCC
Q 012699 221 --------------VDAKRVVCD-------LNTT--------------------------------DAFPSVLDLKCSPV 247 (458)
Q Consensus 221 --------------~~~~~~~~~-------~~~~--------------------------------~~~~~v~~~~~~~~ 247 (458)
+.++..... +..+ .+...+..++|+|+
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 333321110 0000 00112333455677
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEee--c-----CCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLP--L-----GEDPPAITSLCFNHNGKILAASAVDGMIH 318 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~--~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 318 (458)
++.+++++.| |+|++||+.++... ..+. + .+|...|.+++|+|++++||+|+.||+|+
T Consensus 447 g~~laSgs~D-------------gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~ 513 (902)
T 2oaj_A 447 GTAFITGHSN-------------GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV 513 (902)
T ss_dssp EEEEEEEETT-------------SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CcEEEEecCC-------------CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence 7777777777 69999999887432 1111 1 16778899999999999999999999999
Q ss_pred EEeCCCCc---------------------------------------------eeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 319 MFDMSAGL---------------------------------------------QITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 319 v~d~~~~~---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
+||+.+++ ++..+.+|.+.|++++|+|+| +||+|
T Consensus 514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence 99997652 366788999999999999999 99999
Q ss_pred cCCCeEEEEeccCCCeeEEeecCCcccCC-CCCCCceeEEEEc-----cCC---CEEEEEeCCccEEEEEc---cCCCcc
Q 012699 354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDP-ESSKSCRHEMALD-----VNG---RRLLVTSGSVRAPIYQV---RGHASG 421 (458)
Q Consensus 354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s-----~~g---~~l~~~~~~~~i~i~~~---~~~~~~ 421 (458)
+.|++|++||+++..... ...+ ... ..|...|++++|+ ||| ++|++|+.|++|++||+ .++...
T Consensus 593 s~D~tv~lwd~~~~~~~~-~~~~---~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIY-MENI---REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp ETTSEEEEEETTTTEEEE-EEEG---GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred eCCCcEEEEECCCCeEEE-Eeeh---hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 999999999987654322 1111 122 2688889999999 885 89999999999999999 555544
Q ss_pred cccCCC-----CCcEEEEE-EC----------------------CCCCeEEEecCCCcEEEEeCC
Q 012699 422 MRTLPH-----GAAITTVD-WH----------------------PTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 422 ~~~~~h-----~~~v~~~~-~~----------------------~~~~~l~s~~~dg~v~iw~l~ 458 (458)
..+.+| .++|.+++ |+ +++.+|+++ +..||||++.
T Consensus 669 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~ 731 (902)
T 2oaj_A 669 VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLG 731 (902)
T ss_dssp EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTT
T ss_pred EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCc
Confidence 454444 57787777 65 455555544 7789999873
No 20
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=330.26 Aligned_cols=206 Identities=16% Similarity=0.264 Sum_probs=176.8
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++..... ....|...|.+++|+ +++++|++|+.|++|++||++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECC
Confidence 467789999999985 6889999999999999988765322 233577899999999 788999999999999999999
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
+++.+..+..|. ..|.+++|+|++. .+++++.| |.|++||+++++....+....+...+.+++|
T Consensus 158 ~~~~~~~~~~h~--~~V~~~~~~~~~~~~l~s~s~D-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 158 QQVVLSSYRAHA--AQVTCVAASPHKDSVFLSCSED-------------NRILLWDTRCPKPASQIGCSAPGYLPTSLAW 222 (344)
T ss_dssp TTEEEEEECCCS--SCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTSSSCEEECC----CCCEEEEEE
T ss_pred CCcEEEEEcCcC--CceEEEEecCCCCCceeeeccc-------------cccccccccccceeeeeecceeeccceeeee
Confidence 999998887765 7899999999986 67888887 5999999999999888766666677999999
Q ss_pred ccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCC
Q 012699 302 NHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 302 ~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 367 (458)
+|+ +++|++|+.||.|++||+++++++..+.+|...|++++|+|++ ++|++++.|++|++||+.++
T Consensus 223 ~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~ 290 (344)
T 4gqb_B 223 HPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS 290 (344)
T ss_dssp CSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred cCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence 995 6788999999999999999999999999999999999999998 57999999999999998764
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.1e-45 Score=324.41 Aligned_cols=291 Identities=15% Similarity=0.241 Sum_probs=246.6
Q ss_pred eeeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCC---CccccccCCCceEEEEEecCCCeEEEEEcC
Q 012699 137 VDFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPA---SRNATIYCGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 137 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
+....+|.+|.++|++++|+|++ ++|++|+.|++|++|++...... .......|...|.+++|+ +++.+|++++.
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~dg~~l~s~s~ 85 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLT-ADGAYALSASW 85 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEET
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEEC-CCCCEEEEEeC
Confidence 34677899999999999999965 89999999999999998654321 112334577899999999 78899999999
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
|++|++||+.+++....+..+. ..|.+++|+|++..+++++.| +.|++||++. +....+ .+|
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s~D-------------~~i~vwd~~~-~~~~~~--~~h 147 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHK--SDVMSVDIDKKASMIISGSRD-------------KTIKVWTIKG-QCLATL--LGH 147 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSCEEEEEETT-------------SCEEEEETTS-CEEEEE--CCC
T ss_pred CCEEEEEECCCCCeeEEEccCC--CcEEEEEEcCCCCEEEEEeCC-------------CeEEEEECCC-CeEEEE--ecc
Confidence 9999999999999988887665 789999999999999999998 5999999975 444443 478
Q ss_pred CCcEEEEEEccC------CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 293 PPAITSLCFNHN------GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 293 ~~~i~~~~~~~~------~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
...+.+++|+|. +.+|++++.|+.|++||+++.+....+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 889999999985 44899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--------CCCCCcEEEEEECC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--------LPHGAAITTVDWHP 438 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~~~ 438 (458)
.+...... ....+.+++|+|++.+|++++.++ +++|+++.......+ ..|...+.+++|+|
T Consensus 228 ~~~~~~~~----------~~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 296 (319)
T 3frx_A 228 KKAMYTLS----------AQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA 296 (319)
T ss_dssp TEEEEEEE----------CCSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT
T ss_pred CcEEEEec----------CCCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECC
Confidence 65443321 234699999999999999887665 999998765433222 13567899999999
Q ss_pred CCCeEEEecCCCcEEEEeC
Q 012699 439 TLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 439 ~~~~l~s~~~dg~v~iw~l 457 (458)
+|++|++|+.||.|+||++
T Consensus 297 dg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 297 DGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp TSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEeecCceEEEEEE
Confidence 9999999999999999997
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-45 Score=335.64 Aligned_cols=302 Identities=17% Similarity=0.274 Sum_probs=251.2
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
+.|++|...|++++| +|++++|+||+.|++++||+..++.
T Consensus 60 ~~l~gH~~~V~~~~~-sp~~~~l~s~s~D~~v~iWd~~~~~--------------------------------------- 99 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDW-TPEKNWIVSASQDGRLIVWNALTSQ--------------------------------------- 99 (380)
T ss_dssp EEECCCSSCEEEEEE-CTTSSCEEEEETTSEEEEEETTTTE---------------------------------------
T ss_pred ecccccccEEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCc---------------------------------------
Confidence 458899999999999 9999999999999999999875541
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
....+.+|...|.+++|+|++++|++|+.|+.+++|++.
T Consensus 100 -----------------------------------------~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 100 -----------------------------------------KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp -----------------------------------------EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred -----------------------------------------cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 233556789999999999999999999999999999987
Q ss_pred CCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC---CCCCCceeeeeecC-CC
Q 012699 178 SSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT---TDAFPSVLDLKCSP-VE 248 (458)
Q Consensus 178 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~ 248 (458)
+... ........|...+.++.|.|.++..|++|+.|++|++||+.+++.+..+.. ..+...+.++.+++ ++
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 218 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA 218 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence 5321 112233456778999999977778899999999999999999988776632 23446899999987 78
Q ss_pred CeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce
Q 012699 249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ 327 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 327 (458)
..+++++.| |.|++||++. .+....+ .+|...|.+++|+|++++|++|+.||.|++||+++++.
T Consensus 219 ~~l~sgs~D-------------~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 219 NMFISGSCD-------------TTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp CEEEEEETT-------------SCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred CEEEEEECC-------------CeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 899999988 5999999984 4555554 47888999999999999999999999999999999988
Q ss_pred eeeeeCCCC-------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 328 ITGWPAHDS-------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 328 ~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+..+..+.. .|.+++|+|+|++|++++.||.|++||+...+....... ....|...|.+++|+|+|++
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~h~~~v~~l~~s~dg~~ 358 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT-----LQNSHEGRISCLGLSSDGSA 358 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC-----SCSSCCCCCCEEEECSSSSE
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec-----ccCCCCCceEEEEECCCCCE
Confidence 887765432 489999999999999999999999999987655443211 12367888999999999999
Q ss_pred EEEEeCCccEEEEEccCCCc
Q 012699 401 LLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 401 l~~~~~~~~i~i~~~~~~~~ 420 (458)
|++|+.|+.|++|++.+...
T Consensus 359 l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 359 LCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp EEEECTTSCEEEEECCSSSS
T ss_pred EEEeeCCCCEEEEecCCCcc
Confidence 99999999999999987643
No 23
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.7e-45 Score=322.45 Aligned_cols=291 Identities=15% Similarity=0.232 Sum_probs=249.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..++|.+|.+.|++++|+|++++|++++.||+|++||+.++.... ....+..+|.+++|+ +++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--SIQVTETPVRAGKFI-ARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--EEECCSSCEEEEEEE-GGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--EeeccCCcEEEEEEe-CCCCEEEEECCCCEEE
Confidence 4667899999999999999999999999999999999998876543 334567789999999 6788999999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+||+.+++.+..+..+. ..|.+++|+|+++++++++.| |.|++||++++...... +.+|...|.
T Consensus 81 vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D-------------~~v~lWd~~~~~~~~~~-~~~h~~~v~ 144 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHP--DYIRSIAVHPTKPYVLSGSDD-------------LTVKLWNWENNWALEQT-FEGHEHFVM 144 (304)
T ss_dssp EEETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETT-------------SCEEEEEGGGTTEEEEE-ECCCCSCEE
T ss_pred EEECCCCcEEEEEeCCC--CcEEEEEEcCCCCEEEEECCC-------------CeEEEEECCCCcchhhh-hcccCCcEE
Confidence 99999999988887665 689999999999999999998 59999999887444322 357888999
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 298 SLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 298 ~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
+++|+| ++.+|++|+.|+.|++||++++.+...+. .|...+..+.|+| ++++|++++.|++|++||+++.......
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 999999 67899999999999999998877666554 5668899999987 7789999999999999999976543322
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC--eEEEecCCCc
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP--MFLTGSADHS 451 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 451 (458)
..|...|..++|+|++++|++++.|+.|++||+.+.+....+..|...+.+++|+|++. ++++|+.||
T Consensus 225 ---------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g- 294 (304)
T 2ynn_A 225 ---------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG- 294 (304)
T ss_dssp ---------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-
T ss_pred ---------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-
Confidence 25777899999999999999999999999999999887777778999999999999986 577777664
Q ss_pred EEEEeC
Q 012699 452 VQVMSL 457 (458)
Q Consensus 452 v~iw~l 457 (458)
+.+|++
T Consensus 295 ~~~~~~ 300 (304)
T 2ynn_A 295 FTVLSL 300 (304)
T ss_dssp EEEEEC
T ss_pred eEEEEe
Confidence 677765
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-45 Score=332.22 Aligned_cols=288 Identities=17% Similarity=0.244 Sum_probs=232.4
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeC------CCcEEEEecCCCCCCCc--cccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 144 LGHTSPISCCRFSSSGNNIASASV------DGTVRIWTYDSSTPASR--NATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
.+|...|++++|+|||++|++|+. |++|++|+..++..... .....+...|.+++|+ +++. +++++.||+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s-~d~~-~l~~s~dg~ 116 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWV-SEKG-ILVASDSGA 116 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEE-TTTE-EEEEETTSC
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEc-CCCC-EEEEECCCE
Confidence 479999999999999999999997 77899999877654322 2234567789999999 4554 566788999
Q ss_pred EEEEEcCCCceeeec--cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 216 IKAWNVDAKRVVCDL--NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 216 i~~wd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
|++||+.+++..... ....+...|.+++|+|+++.+++++.+ |.|++||+++++....+. .|.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-------------g~v~iwd~~~~~~~~~~~--~h~ 181 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-------------FSVKVWDLSQKAVLKSYN--AHS 181 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEEc--CCC
Confidence 999999988755432 233455789999999999999999988 599999999998888774 678
Q ss_pred CcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCe
Q 012699 294 PAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 294 ~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
..|.+++|+|++. ++++++.||.|++||++++++...+. .|...+.+++|+|+ +.+|++++.|+.|++||+++.+.
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 8999999999874 78999999999999999988776554 56778999999997 46889999999999999987654
Q ss_pred eEEeecCCcccCCCCCCCceeEEEEccCC-CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECC-CCCeEEEec
Q 012699 370 VLWTRNCSRFCDPESSKSCRHEMALDVNG-RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHP-TLPMFLTGS 447 (458)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~ 447 (458)
... ...+...|.+++|+|++ ++|++++.|++|+|||+++++ +....+|.+.|++++|+| ++.+|++++
T Consensus 262 ~~~---------~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~-~~~~~~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 262 AQT---------SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE-VFRDLSHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CEE---------ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE-EEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred eEE---------EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc-EeEECCCCCCEEEEEEeCCCCCEEEEEc
Confidence 332 23567789999999987 579999999999999998874 445668999999999999 788999999
Q ss_pred CCCcEEEEeCC
Q 012699 448 ADHSVQVMSLS 458 (458)
Q Consensus 448 ~dg~v~iw~l~ 458 (458)
.||+|++|+++
T Consensus 332 ~Dg~v~iW~~~ 342 (357)
T 4g56_B 332 WDHKVLHHHLP 342 (357)
T ss_dssp TTSCEEEEECC
T ss_pred CCCeEEEEECC
Confidence 99999999984
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-45 Score=332.21 Aligned_cols=315 Identities=17% Similarity=0.177 Sum_probs=248.0
Q ss_pred HhhccccCCCc-ceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 15 AQLSRLKNNSE-TIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 15 ~~~~~l~~h~~-~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
+.+.+|.+|.. .|.+++| +|+|++||+|+.|++++||+.+.+... .
T Consensus 6 ~~~~~~~~h~~~~v~~l~~-sp~g~~las~~~D~~i~iw~~~~~~~~--------------------------~------ 52 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAW-NPAGTLLASCGGDRRIRIWGTEGDSWI--------------------------C------ 52 (345)
T ss_dssp EEEEEECCSTTSCEEEEEE-CTTSSCEEEEETTSCEEEEEEETTEEE--------------------------E------
T ss_pred EEeeeecCCCCCcEEEEEE-CCCCCEEEEEcCCCeEEEEEcCCCcce--------------------------e------
Confidence 45778999998 8999999 999999999999999999986544100 0
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRI 173 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 173 (458)
......+|.+.|.+++|+|++++|++|+.|+++++
T Consensus 53 ---------------------------------------------~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 53 ---------------------------------------------KSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp ---------------------------------------------EEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ---------------------------------------------eeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 11123589999999999999999999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCe
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
|++.............|...|.+++|+ +++++|++++.|+.|++||+.++.. ...+..+ ...|.+++|+|++.+
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSSSC
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCCCE
Confidence 998876543233345677899999999 6889999999999999999987643 3344443 368999999999999
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-----
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG----- 325 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~----- 325 (458)
+++++.| +.|++||.++++......+.+|...|.+++|+|++++|++|+.|+.|++||....
T Consensus 165 l~s~s~d-------------~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 165 LASASYD-------------DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp EEEEETT-------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred EEEEeCC-------------CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 9999988 5999999998776655566789899999999999999999999999999996432
Q ss_pred ----------ceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 326 ----------LQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 326 ----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
+++..+.+ |...|.+++|+|++..|++++.|+.|++|+.....................|...|.+++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 22334444 8889999999999999999999999999998754321000000000112357888999999
Q ss_pred ccCC-CEEEEEeCCccEEEEEccCCCcccc
Q 012699 395 DVNG-RRLLVTSGSVRAPIYQVRGHASGMR 423 (458)
Q Consensus 395 s~~g-~~l~~~~~~~~i~i~~~~~~~~~~~ 423 (458)
+|++ .+|++++.||+|++|++...+.+..
T Consensus 312 ~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9998 5999999999999999988765443
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7e-45 Score=338.25 Aligned_cols=347 Identities=17% Similarity=0.233 Sum_probs=275.2
Q ss_pred hccccC--CCcceeeeeeccCCCc-eeeeeecCcceEEecc----ccccccccceeeeeccCCceeeeeCCccceeEeec
Q 012699 17 LSRLKN--NSETIKYANIGQTKNS-TLASGVNEESLLLSTN----SSEACATTATHMGSAEMGQTWASSRPALSRFATNM 89 (458)
Q Consensus 17 ~~~l~~--h~~~i~~~~~~s~~~~-~l~s~~~d~~~~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (458)
...+.. |...|++++| +|+|+ +||+|+.|+.+++|+. ..+...
T Consensus 36 ~~~~~~~~~~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------------------------- 85 (425)
T 1r5m_A 36 VKILKEIVKLDNIVSSTW-NPLDESILAYGEKNSVARLARIVETDQEGKKY----------------------------- 85 (425)
T ss_dssp CEECEEEEECSCCSEEEE-CSSCTTEEEEEETBTEEEEEEEEEC------C-----------------------------
T ss_pred hhheeeeeccCceEEEEE-CCCCCcEEEEecCCceEEEEEEecccCCcccc-----------------------------
Confidence 344554 5589999999 99999 9999999999999998 544211
Q ss_pred cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCC
Q 012699 90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDG 169 (458)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 169 (458)
|++.... .+.. +.. ......+|.+.|++++|+|++++|++++.||
T Consensus 86 --------~~~~~~~-----~~~~-------~~~---------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 130 (425)
T 1r5m_A 86 --------WKLTIIA-----ELRH-------PFA---------------LSASSGKTTNQVTCLAWSHDGNSIVTGVENG 130 (425)
T ss_dssp --------EEEEEEE-----EEEC-------CCC---------------CC------CBCEEEEEECTTSSEEEEEETTS
T ss_pred --------ccccccc-----cccc-------ccc---------------ccccccCCCCceEEEEEcCCCCEEEEEeCCC
Confidence 1110000 0000 000 0012346889999999999999999999999
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc-----------
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS----------- 238 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~----------- 238 (458)
.|++||. ++... .....+...|.+++|+ +++++|++++.||.|++||+.+++....+..+.....
T Consensus 131 ~i~i~~~-~~~~~--~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (425)
T 1r5m_A 131 ELRLWNK-TGALL--NVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDG 206 (425)
T ss_dssp CEEEEET-TSCEE--EEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------C
T ss_pred eEEEEeC-CCCee--eeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCc
Confidence 9999993 33332 2334577899999999 6788999999999999999999998887776542211
Q ss_pred --eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 239 --VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 239 --v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
+.++.|+|++. +++++.+ |.|++||+++++....+. .|...|.+++|+|++++|++++.||.
T Consensus 207 ~~~~~~~~~~~~~-~~~~~~~-------------g~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 207 SLGVDVEWVDDDK-FVIPGPK-------------GAIFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp CCBSCCEEEETTE-EEEECGG-------------GCEEEEETTCSSCSEEEC--CCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ceeeEEEEcCCCE-EEEEcCC-------------CeEEEEEcCCCceeeeec--cCCCceEEEEECCCCCEEEEEcCCCE
Confidence 88899998755 6666666 599999999988877764 67788999999999999999999999
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
|++||+++++.+..+..|...|.+++|+|++ ++++++.|+.|++||+.+........ .+...+.+++|+|
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---------~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI---------VDGVPIFAGRISQ 340 (425)
T ss_dssp EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE---------CTTCCEEEEEECT
T ss_pred EEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc---------cCCccEEEEEEcC
Confidence 9999999999999999999999999999999 99999999999999998765443221 3566799999999
Q ss_pred CCCEEEEEeCCccEEEEEccCCC--------------------cccccCCCCC--cEEEEEECCCCCeEEEecCCCcEEE
Q 012699 397 NGRRLLVTSGSVRAPIYQVRGHA--------------------SGMRTLPHGA--AITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 397 ~g~~l~~~~~~~~i~i~~~~~~~--------------------~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
++++|++++.++.|++|++.+.. ....+.+|.. .|++++|+|++++|++++.||.|++
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 99999999999999999998776 5556667866 9999999999999999999999999
Q ss_pred EeCC
Q 012699 455 MSLS 458 (458)
Q Consensus 455 w~l~ 458 (458)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
No 27
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3e-44 Score=319.63 Aligned_cols=294 Identities=20% Similarity=0.364 Sum_probs=251.8
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
...++.+|.++|++++|+|++++|++++.||.|++|++.+++... ....|...|.+++|+ +++++|++++.|+.|++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWS-SDSNLLVSASDDKTLKI 91 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--hhccCCCceEEEEEc-CCCCEEEEECCCCEEEE
Confidence 566788999999999999999999999999999999998776543 334577889999999 68899999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||+++++.+..+..+. ..+.++.|+|++..+++++.+ |.|++||+++++....+. .|...|.+
T Consensus 92 wd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~--~~~~~v~~ 154 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHS--NYVFCCNFNPQSNLIVSGSFD-------------ESVRIWDVKTGKCLKTLP--AHSDPVSA 154 (312)
T ss_dssp EETTTCCEEEEEECCS--SCEEEEEECSSSSEEEEEETT-------------SCEEEEETTTCCEEEEEC--CCSSCEEE
T ss_pred EECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCEEEEEec--CCCCcEEE
Confidence 9999999888887665 689999999999999999988 599999999988877764 67788999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS 377 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 377 (458)
++|+|++++|++++.||.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||+++.+.......
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-- 232 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-- 232 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS--
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe--
Confidence 9999999999999999999999999988877664 5567899999999999999999999999999997654432211
Q ss_pred cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec--CCCcEEEE
Q 012699 378 RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS--ADHSVQVM 455 (458)
Q Consensus 378 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iw 455 (458)
.......+......+++++|++++.|+.|++||+.+.+....+.+|...|.+++|+|++++|++++ .|++|++|
T Consensus 233 ----~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 233 ----HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp ----SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred ----cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 111112223333446889999999999999999999888778889999999999999999999986 69999999
Q ss_pred eCC
Q 012699 456 SLS 458 (458)
Q Consensus 456 ~l~ 458 (458)
+.+
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 974
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.4e-44 Score=323.96 Aligned_cols=285 Identities=15% Similarity=0.237 Sum_probs=244.9
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
.+|.++|++++|+|++++|++++ ||.|++||+.++......... .+...|.+++|+ +++++|++++.||.|++||
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEE
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEE
Confidence 37999999999999999999999 999999999877644322221 467889999999 6888999999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
+.+++.........+...+.+++|+|+++.+++++.+ |.|++||+++++....+. .|...+.+++
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------g~v~~~d~~~~~~~~~~~--~~~~~i~~~~ 190 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------------GNIAVWDLHNQTLVRQFQ--GHTDGASCID 190 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEE
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-------------CcEEEEeCCCCceeeeee--cccCceEEEE
Confidence 9988743333333334689999999999999999888 599999999988877764 5778899999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++.|+.|++||+.+.....
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~--------- 260 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ--------- 260 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE---------
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---------
Confidence 99999999999999999999999998887764 78889999999999999999999999999998764321
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
...+...+.+++|+|++++|++++.++.|++|++.+.+.. ....|...|.+++|+|++++|++++.||.|++|++
T Consensus 261 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 261 -LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 2346778999999999999999999999999999987654 44568899999999999999999999999999996
No 29
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.5e-45 Score=327.89 Aligned_cols=292 Identities=17% Similarity=0.250 Sum_probs=251.1
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
++|++|...|.+++| ++++++|++|+.|+++++|+...+.....+. ........+.+++++.++++++.|+.+++
T Consensus 49 ~~l~gH~~~v~~~~~-s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 49 RTLRGHLAKIYAMHW-GTDSRLLLSASQDGKLIIWDSYTTNKVHAIP----LRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEE-CTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred eeecCCCCceEEEEE-CCCCCEEEEEeCCCcEEEEECCCCCcceEee----cCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 357899999999999 9999999999999999999988776542222 12233455777788899999999999999
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
|++..... .......+.+|.+.|.++.|++++. +++++.|++|++||+.
T Consensus 124 w~~~~~~~------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~ 172 (340)
T 1got_B 124 YNLKTREG------------------------------NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE 172 (340)
T ss_dssp EETTTCSB------------------------------SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT
T ss_pred EECccCCC------------------------------cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC
Confidence 99865220 0114556789999999999998874 8899999999999998
Q ss_pred CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecc
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAAS 257 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 257 (458)
+++... ....|...|.+++|+ +++.++++|+.|+.|++||++++.....+..+. ..|.+++|+|++..+++++.|
T Consensus 173 ~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 173 TGQQTT--TFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp TTEEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred CCcEEE--EEcCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcCC
Confidence 876543 334577889999999 678899999999999999999999888887665 689999999999999999988
Q ss_pred cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCC
Q 012699 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSA 337 (458)
Q Consensus 258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 337 (458)
|.|++||+++++....+....+...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..+
T Consensus 248 -------------~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~ 314 (340)
T 1got_B 248 -------------ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314 (340)
T ss_dssp -------------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred -------------CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc
Confidence 5999999999888877765555567999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 338 ISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 338 v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
|.+++|+|++.+|++++.|+.|++||
T Consensus 315 v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999997
No 30
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.1e-45 Score=329.03 Aligned_cols=296 Identities=17% Similarity=0.256 Sum_probs=252.1
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
+.|.+|...|+|++| ++++++||||+.|+++++||...+.....+. .+.....++.+++++.++++++.|+.+++
T Consensus 58 ~~l~gH~~~V~~~~~-s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~----~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDW-CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT----MPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp EEEECCSSCEEEEEE-CTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred EEecCCCCeEEEEEE-CCCCCEEEEEeCCCeEEEEECCCCCcceEEe----cCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 467899999999999 9999999999999999999987765442221 22333455777888999999999999999
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYD 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 177 (458)
|++....... . ......+.+|.+.|.+++|+|+++.|++++.|++|++||+.
T Consensus 133 ~~~~~~~~~~----------------~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~ 184 (354)
T 2pbi_B 133 YPLTFDKNEN----------------M------------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE 184 (354)
T ss_dssp EECCCCTTCC----------------S------------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEecccccc----------------c------------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC
Confidence 9986532100 0 01334567899999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 178 SSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
+++... ....|...|.+++|+|. ++.+|++|+.||.|++||+++++++..+..+. ..|.+++|+|++..+++++.
T Consensus 185 ~~~~~~--~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 185 SGQLLQ--SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp TCCEEE--EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred CCeEEE--EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeC
Confidence 887543 33457788999999864 46899999999999999999999988887655 68999999999999999998
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
| +.|++||++..+....+....+...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|.+
T Consensus 261 D-------------~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~ 327 (354)
T 2pbi_B 261 D-------------ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327 (354)
T ss_dssp T-------------SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred C-------------CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence 8 599999999988777775445556799999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
.|.+++|+|++++|++++.|++|++|+
T Consensus 328 ~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999996
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=324.12 Aligned_cols=299 Identities=17% Similarity=0.257 Sum_probs=233.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-cc-CCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-IY-CGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
+.++.+.+|.++|++++|+|+ +|++|+.|++|++||+..+........ .. |...|.+++|+ +++++|++++.|++
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETTSC
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCCCc
Confidence 367788999999999999988 999999999999999987543211111 23 77889999999 67889999999999
Q ss_pred EEEEEcCC-------CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ce-eEE
Q 012699 216 IKAWNVDA-------KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KA-MTV 286 (458)
Q Consensus 216 i~~wd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~-~~~ 286 (458)
|++||++. .+....+..+. ..|.+++|+|+++++++++.| +.|++||++.. .. ...
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~--~~V~~v~~sp~g~~las~s~D-------------~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHE--NEVKGVAWSNDGYYLATCSRD-------------KSVWIWETDESGEEYECI 146 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETT-------------SCEEEEECCTTCCCCEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCC--CcEEEEEECCCCCEEEEEeCC-------------CEEEEEeccCCCCCeEEE
Confidence 99999853 23444455444 789999999999999999998 59999999532 21 122
Q ss_pred eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCC--CCEEEEecCCCeEEEE
Q 012699 287 LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAG--LQITGWPAHDSAISSILFGPD--ETSIFSLGSDGKIIEW 362 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw 362 (458)
..+.+|...|.+++|+|++.+|++|+.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++.|++|++|
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw 226 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence 234578889999999999999999999999999998766 678889999999999999998 6789999999999999
Q ss_pred eccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC--cccc-cCCCCC-cEEEEE
Q 012699 363 SLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA--SGMR-TLPHGA-AITTVD 435 (458)
Q Consensus 363 d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~--~~~~-~~~h~~-~v~~~~ 435 (458)
|+..... ..+. + .......|...|.+++|++++ +|++++.|+.|++|+..++. .... ..+|.. .|++++
T Consensus 227 ~~~~~~~~~~~~~~--~-~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 227 KYMGDDEDDQQEWV--C-EAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVK 302 (330)
T ss_dssp EEEEECTTSCEEEE--E-EEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEE
T ss_pred EecCCCccccceeE--E-eeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEE
Confidence 9975321 0000 0 000112367789999999765 89999999999999997653 2222 347877 899999
Q ss_pred ECC--CCCeEEEecCCCcEEEEeCC
Q 012699 436 WHP--TLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 436 ~~~--~~~~l~s~~~dg~v~iw~l~ 458 (458)
|+| ++++||+|+.||+|+||+++
T Consensus 303 ~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 303 WLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EC-----CCEEEEETTSEEEEEEC-
T ss_pred EecCCCceEEEEecCCCcEEEEEec
Confidence 999 68899999999999999974
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.5e-45 Score=329.54 Aligned_cols=305 Identities=13% Similarity=0.124 Sum_probs=238.1
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
...+|...|++++| +|||++||+|+.|. +++|| +++++|
T Consensus 37 ~p~~H~~~V~~v~f-SpDG~~las~s~d~-~~~wd---------------------------------------~~v~~~ 75 (357)
T 4g56_B 37 APACMEVQIGAVRY-RRDGALLLAASSLS-SRTWG---------------------------------------GSIWVF 75 (357)
T ss_dssp ---CCCSEEEEEEE-CSSSCEEEEEECSS-SSSCC---------------------------------------EEEEEE
T ss_pred CcccccCCEEEEEE-CCCCCEEEEEcCCC-Ccccc---------------------------------------CeEEEE
Confidence 44679999999999 99999999999764 35553 223344
Q ss_pred ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699 99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 178 (458)
+..... +... ......+|...|++++|+|+++ +++++.||+|++||+.+
T Consensus 76 ~~~~~~----------------~~~~--------------~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~ 124 (357)
T 4g56_B 76 KDPEGA----------------PNES--------------LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILE 124 (357)
T ss_dssp SSCC-------------------CGG--------------GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC----
T ss_pred ECCCCC----------------ccee--------------EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccc
Confidence 332211 0000 1123347899999999999985 55678899999999988
Q ss_pred CCCCCcc--ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEee
Q 012699 179 STPASRN--ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSAA 255 (458)
Q Consensus 179 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~ 255 (458)
++..... ....|...|.+++|+ +++++|++++.|+.|++||+++++.+..+..+. ..|.+++|+|++. .+++++
T Consensus 125 ~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~~~~s~~ 201 (357)
T 4g56_B 125 KESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS--SEVNCVAACPGKDTIFLSCG 201 (357)
T ss_dssp ----CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTCSSCEEEEE
T ss_pred cceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEccCCCceeeeec
Confidence 7654322 233567899999999 788999999999999999999999998887665 6899999999886 677888
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
.+ |.|++||++++++...+....+...+.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|
T Consensus 202 ~d-------------g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~ 268 (357)
T 4g56_B 202 ED-------------GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH 268 (357)
T ss_dssp TT-------------SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC
T ss_pred cC-------------CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc
Confidence 77 5999999999988887777777788999999997 568999999999999999999999999999
Q ss_pred CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEE
Q 012699 335 DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPI 412 (458)
Q Consensus 335 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i 412 (458)
...|++++|+|++ ++|++++.|++|++||+++.+... ...|...|++++|+| ++++|++++.|++|++
T Consensus 269 ~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~----------~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR----------DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEE----------ECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeE----------ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 9999999999987 579999999999999998764322 125778899999999 8999999999999999
Q ss_pred EEccCCCcc
Q 012699 413 YQVRGHASG 421 (458)
Q Consensus 413 ~~~~~~~~~ 421 (458)
|++....+.
T Consensus 339 W~~~~~~~~ 347 (357)
T 4g56_B 339 HHLPSEGRT 347 (357)
T ss_dssp EECC-----
T ss_pred EECCCCCcc
Confidence 999765443
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-44 Score=363.00 Aligned_cols=379 Identities=14% Similarity=0.142 Sum_probs=304.3
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
..+.|.+|...|++++| +|+|++|++|+.|+.++||+...+.....+. ...+....+.+++++.++++++.|+.+
T Consensus 5 ~~~~~~~h~~~v~~i~~-sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ----VTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTEEEEEEE----CCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cceeeecCCCceEEEEE-CCCCCEEEEEeCCCEEEEEECCCCceEEEEe----cCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 45688999999999999 9999999999999999999998876543222 123334456667778899999999999
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
++|++.... .+..+.+|.+.|++++|+|++++|++++.||+|++||
T Consensus 80 ~vw~~~~~~----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 80 RVFNYNTGE----------------------------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEEETTTCC----------------------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEECCCCc----------------------------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 999986532 5567789999999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC--CCCeEEE
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP--VEPIFVS 253 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~ 253 (458)
+.++... ......+...|.+++|+|.++..+++++.||.|++||+.++.....+..+. ...+..++|+| ++..+++
T Consensus 126 ~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 126 WENNWAL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp GGGTSEE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEE
T ss_pred CCCCceE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEE
Confidence 9876332 223345678899999996588999999999999999999887766665443 25789999999 8999999
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
++.+ |.|++||+.+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus 204 ~~~d-------------g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 268 (814)
T 3mkq_A 204 ASDD-------------LTIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268 (814)
T ss_dssp ECTT-------------SEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred EeCC-------------CEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec
Confidence 9888 599999999988877775 5677899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCE-EEEecCCCeEEEEeccCCCeeEEeecCC---------c-------------------------
Q 012699 334 HDSAISSILFGPDETS-IFSLGSDGKIIEWSLQNQGQVLWTRNCS---------R------------------------- 378 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~------------------------- 378 (458)
|...+.+++|+|++.. +++++.++.+.+|++............. .
T Consensus 269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (814)
T 3mkq_A 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ 348 (814)
T ss_dssp SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC
T ss_pred CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee
Confidence 9999999999999873 3445557778999987543222111000 0
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
......+...+.+++|+|+|+++++++ ++.+.+|++.... ..+.+.+.+++|+|++++|++++.||.|++|+
T Consensus 349 ~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~-----~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 349 TKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWR-----NKAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp CEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTE-----EEEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred eecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccc-----ccCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 000122345678999999999999988 8999999975432 12456788889999988888888888898886
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=341.69 Aligned_cols=375 Identities=16% Similarity=0.206 Sum_probs=278.2
Q ss_pred CCcceeeeeeccCCCc-eeeee----------ecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccC
Q 012699 23 NSETIKYANIGQTKNS-TLASG----------VNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSG 91 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~-~l~s~----------~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (458)
+...|.+++| +|+|+ +|++| +.|+.+++|+...+.....+... ........+.+++++.+|++++.
T Consensus 11 ~~~~v~~~~~-sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 11 EFSRTATFAW-SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp EEEESCBCCB-CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEES
T ss_pred hhhhcceEee-CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEcc
Confidence 4567999999 99997 99999 89999999999887533111111 12334455777778899999999
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCc
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-GNNIASASVDGT 170 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~ 170 (458)
|+.+++|++..... + ...+..+.+|.+.|++++|+|+ +++|++++.|++
T Consensus 88 dg~v~vw~~~~~~~-----------------~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 88 NGSLELYSTNEANN-----------------A-------------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SSCEEEECCSSTTS-----------------C-------------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred CCeEEEeecccccc-----------------c-------------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence 99999999865220 0 0145567899999999999998 899999999999
Q ss_pred EEEEecCCCC------CCCc-cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC----CCce
Q 012699 171 VRIWTYDSST------PASR-NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA----FPSV 239 (458)
Q Consensus 171 v~iwd~~~~~------~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~v 239 (458)
|++||+.+.+ .... .....+...|.+++|+|.++.++++++.||.|++||+++++....+..+.. ...+
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence 9999998876 2211 122356788999999965588999999999999999999998888776531 3689
Q ss_pred eeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecC-CCCCcEEEEEEcc-CCCEEEEEecCC
Q 012699 240 LDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLG-EDPPAITSLCFNH-NGKILAASAVDG 315 (458)
Q Consensus 240 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~dg 315 (458)
.+++|+|++ ..+++++.++. .+.|++||++++ .+...+ . .|...|.+++|+| ++++|++++.||
T Consensus 218 ~~~~~~~~~~~~l~~~~~d~~----------~~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATATGSDN----------DPSILIWDLRNANTPLQTL--NQGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp EEEEECSSCTTEEEEEECCSS----------SCCCCEEETTSTTSCSBCC--CSCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred EEEEECCCCCCEEEEEECCCC----------CceEEEEeCCCCCCCcEEe--ecCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 999999997 57777776610 029999999986 344433 3 6778899999999 899999999999
Q ss_pred eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
.|++||+++++++..+..|...|.+++|+|++ .+|++++.|+.|++||+.+......... ...........+
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~ 358 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE-------TETKQQESETDF 358 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC---------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccc-------ccccccCCcccc
Confidence 99999999999999999999999999999998 8999999999999999987543211000 001111222333
Q ss_pred ccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 395 DVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 395 s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+.+..++.++..+.+. + .....|..++++++|+|+|++|++++.||.|+||+++
T Consensus 359 ~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 359 WNNVSREESKEKPSVFH---L------QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp --------CCSCCCSSC---C------CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccccccccccc---c------cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence 33444443333222111 1 1112367788899999999999999999999999974
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.1e-44 Score=315.44 Aligned_cols=292 Identities=15% Similarity=0.187 Sum_probs=246.1
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
..++|.+|...|++++| +|++++|++|+.|+++++|+.+++.
T Consensus 5 ~~~~~~~h~~~V~~~~f-sp~~~~l~s~~~dg~v~lWd~~~~~------------------------------------- 46 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDF-HPTEPWVLTTLYSGRVELWNYETQV------------------------------------- 46 (304)
T ss_dssp CEEEEEEECSCEEEEEE-CSSSSEEEEEETTSEEEEEETTTTE-------------------------------------
T ss_pred eEEeecCCCCceEEEEE-CCCCCEEEEEcCCCcEEEEECCCCc-------------------------------------
Confidence 45679999999999999 9999999999999999999976551
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
.++.+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus 47 -------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 47 -------------------------------------------EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp -------------------------------------------EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred -------------------------------------------eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 3345667899999999999999999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeeeeecC-CCCeEEE
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDLKCSP-VEPIFVS 253 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~ 253 (458)
+.+++... ....|...|.+++|+ +++.+|++|+.||+|++||++++. ....+..+. ..|.+++|+| ++..+++
T Consensus 84 ~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~s 158 (304)
T 2ynn_A 84 YNTGEKVV--DFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFAS 158 (304)
T ss_dssp TTTCCEEE--EEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEE
T ss_pred CCCCcEEE--EEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEE
Confidence 99887643 344577899999999 678899999999999999999874 444555544 6899999999 5788999
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--CCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--NGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
++.| |.|++||+++......+. ..+...+..+.|+| ++.+|++|+.|+.|++||+++++++..+
T Consensus 159 gs~D-------------~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 159 GCLD-------------RTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EETT-------------SEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EeCC-------------CeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 9988 599999999887766664 34557799999987 6789999999999999999999999999
Q ss_pred eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--EEEEEeCCcc
Q 012699 332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR--RLLVTSGSVR 409 (458)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~~~~~~~~ 409 (458)
.+|...|.+++|+|++++|++++.||+|++||+.+.+..... ..+...+.+++++|++. ++++|+.+|
T Consensus 225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~asg~~~g- 294 (304)
T 2ynn_A 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL---------NVGLERSWCIATHPTGRKNYIASGFDNG- 294 (304)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE---------CCSSSSEEEEEECTTCGGGCEEEEETTE-
T ss_pred CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec---------cCCCccEEEEEECCCCCceEEEEecCCc-
Confidence 999999999999999999999999999999999976544322 23556789999999885 466666555
Q ss_pred EEEEEccC
Q 012699 410 APIYQVRG 417 (458)
Q Consensus 410 i~i~~~~~ 417 (458)
+.+|++..
T Consensus 295 ~~~~~~~~ 302 (304)
T 2ynn_A 295 FTVLSLGN 302 (304)
T ss_dssp EEEEECC-
T ss_pred eEEEEecc
Confidence 77777654
No 36
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-43 Score=314.08 Aligned_cols=303 Identities=18% Similarity=0.274 Sum_probs=246.5
Q ss_pred hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
...+|.+|...|++++| ++++ ++|+||+.|+++++|+...... .
T Consensus 9 l~~~l~gH~~~V~~l~~-~~~~~~~l~s~s~D~~v~~W~~~~~~~------------------------~---------- 53 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLAT-SAGQPNLLLSASRDKTLISWKLTGDDQ------------------------K---------- 53 (319)
T ss_dssp EEEEECCCSSCEEEEEE-CSSCTTEEEEEETTSEEEEEEEEEETT------------------------E----------
T ss_pred EEEEEccccceEEEEEc-cCCCccEEEEecCCccEEEecCCCCCc------------------------c----------
Confidence 34588999999999999 7754 8999999999999998754310 0
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
....+..+.+|...|.+++|+|++++|++|+.|++|++|
T Consensus 54 -----------------------------------------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 54 -----------------------------------------FGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp -----------------------------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -----------------------------------------ccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 001456788999999999999999999999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC------
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE------ 248 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 248 (458)
|+.+++... ....|...|.+++|+ +++.+|++++.|++|++||++. +.+..+..+. ..+.++.+.|..
T Consensus 93 d~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~--~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 93 DVATGETYQ--RFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIKG-QCLATLLGHN--DWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp ETTTTEEEE--EEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETTS-CEEEEECCCS--SCEEEEEECCC------C
T ss_pred ECCCCCeeE--EEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccC--CcEEEEEEccCCCCCCCc
Confidence 998876543 345678899999999 7888999999999999999974 4555555444 679999999854
Q ss_pred CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee
Q 012699 249 PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI 328 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 328 (458)
..+++++.+ +.|++||+++.+....+ .+|...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus 167 ~~l~s~~~d-------------~~i~~wd~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 167 VTIISAGND-------------KMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp CEEEEEETT-------------SCEEEEETTTTEEEEEE--CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cEEEEEeCC-------------CEEEEEECCcchhheee--cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 478888887 59999999988777665 478889999999999999999999999999999999998
Q ss_pred eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699 329 TGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 329 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 408 (458)
..+.. ...|.+++|+|++.+|++++.+ .+++|++......... ..........+...+.+++|+|||++|++|+.|+
T Consensus 232 ~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 232 YTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL-RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp EEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE-CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc-CccccccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 88875 4689999999999999887755 5999999864333222 1111112223456789999999999999999999
Q ss_pred cEEEEEccCC
Q 012699 409 RAPIYQVRGH 418 (458)
Q Consensus 409 ~i~i~~~~~~ 418 (458)
.|++|++.+.
T Consensus 309 ~i~vWd~~t~ 318 (319)
T 3frx_A 309 VIRVWQVMTA 318 (319)
T ss_dssp CEEEEEEEEC
T ss_pred eEEEEEEeec
Confidence 9999998753
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8e-44 Score=326.78 Aligned_cols=293 Identities=19% Similarity=0.335 Sum_probs=244.0
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc----------------cCCCceEEEEEecCCCeEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI----------------YCGTEIMSLEWECKSDRLLL 208 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~l~ 208 (458)
+|.+.|++++|+|+|++||+|+ ++++++|++.+++........ .+...|.+++|+ +++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEE
Confidence 6999999999999999999986 789999999887654221110 112248999999 7889999
Q ss_pred EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee
Q 012699 209 IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP 288 (458)
Q Consensus 209 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~ 288 (458)
+|+.|+.|++||+.+++....+..+. ..|.+++|+|++..+++++.| +.|++||+++++....+.
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~d-------------~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHE--QDIYSLDYFPSGDKLVSGSGD-------------RTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT-------------SEEEEEETTTTEEEEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCC--CCEEEEEEcCCCCEEEEecCC-------------CcEEEEECCCCeeEEEEE
Confidence 99999999999999999888877665 689999999999999999988 599999999998877775
Q ss_pred cCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee-------eCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 289 LGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW-------PAHDSAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
+...+.+++|+| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|+
T Consensus 205 ---~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 205 ---IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp ---CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 335699999999 8999999999999999999998887766 57999999999999999999999999999
Q ss_pred EEeccCCCeeEEeec---CCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699 361 EWSLQNQGQVLWTRN---CSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH 437 (458)
Q Consensus 361 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 437 (458)
+||+++......... .........|...|.+++|+|++++|++++.|+.|++||+.++.....+.+|...|.+++|+
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~ 361 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 361 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEec
Confidence 999986432211000 00011223577789999999999999999999999999999988777788999999999998
Q ss_pred C------CCCeEEEecCCCcEEEEeC
Q 012699 438 P------TLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 438 ~------~~~~l~s~~~dg~v~iw~l 457 (458)
| ++++|++|+.||+|+||++
T Consensus 362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 362 NGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCcCcCCCCCEEEEECCCCcEEECcc
Confidence 6 6789999999999999996
No 38
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.3e-43 Score=314.58 Aligned_cols=309 Identities=18% Similarity=0.249 Sum_probs=239.8
Q ss_pred hhccccCCCcceeeeee-----ccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeecc
Q 012699 16 QLSRLKNNSETIKYANI-----GQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMS 90 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~-----~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (458)
....|++|...|++++| ..+++++|+||+.|+++++|+...+....
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~----------------------------- 63 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG----------------------------- 63 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS-----------------------------
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc-----------------------------
Confidence 35679999999999998 44589999999999999999875431000
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCc
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGT 170 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 170 (458)
........+.+|...|.+++|+|++.+|++|+.|++
T Consensus 64 --------------------------------------------~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 64 --------------------------------------------YFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp --------------------------------------------BSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred --------------------------------------------ccccccchhccCCCceEEEEECCCCCEEEEEcCCCc
Confidence 000144567899999999999999999999999999
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--
Q 012699 171 VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE-- 248 (458)
Q Consensus 171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-- 248 (458)
|++||+.+++... ....|...|.+++|+ +++++|++++.|+.|++||+.............+...+.+++|+|++
T Consensus 100 v~lwd~~~~~~~~--~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 100 LRLWDLRTGTTYK--RFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp EEEEETTSSCEEE--EEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred EEEEECCCCcEEE--EEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccc
Confidence 9999998876543 344578899999999 67889999999999999999854443333333455789999999987
Q ss_pred --------CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEE
Q 012699 249 --------PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMF 320 (458)
Q Consensus 249 --------~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~ 320 (458)
..+++++.+ |.|++||.. .+....+ ..|...|.+++|+|++++|++|+.||.|++|
T Consensus 177 ~~~~~~~~~~l~s~~~d-------------~~i~iwd~~-~~~~~~~--~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iw 240 (343)
T 2xzm_R 177 ANKVQPFAPYFASVGWD-------------GRLKVWNTN-FQIRYTF--KAHESNVNHLSISPNGKYIATGGKDKKLLIW 240 (343)
T ss_dssp CSCCCSSCCEEEEEETT-------------SEEEEEETT-TEEEEEE--ECCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred ccccCCCCCEEEEEcCC-------------CEEEEEcCC-CceeEEE--cCccccceEEEECCCCCEEEEEcCCCeEEEE
Confidence 678888887 599999943 4444444 4677899999999999999999999999999
Q ss_pred eCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE-eecC---CcccCCCCCCCceeEEEEc
Q 012699 321 DMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW-TRNC---SRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 321 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~---~~~~~~~~~~~~v~~~~~s 395 (458)
|+.. ......+ .+...|.+++|+|++.++++ +.|+.|++||+.+...... .... ........+...+.+++|+
T Consensus 241 d~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 241 DILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp ESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 9954 3444443 35667999999999987765 4678899999987543211 1010 0111223567789999999
Q ss_pred cCCCEEEEEeCCccEEEEEccCC
Q 012699 396 VNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 396 ~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
|+|++|++|+.||.|++|+++++
T Consensus 319 p~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCeEEEecCCceEEEEEEEcc
Confidence 99999999999999999998754
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-42 Score=311.91 Aligned_cols=293 Identities=16% Similarity=0.259 Sum_probs=246.3
Q ss_pred eeeeeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 138 DFLETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
++..+|+||++.|++++|+|+ +++|+||+.|++|+|||+...+... ......|...|.+++|+ +++++|++++.|
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s-~dg~~l~s~~~d 107 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS-SDGQFALSGSWD 107 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC-CCCCEEEEEccc
Confidence 456789999999999999997 6899999999999999998765432 11234567899999999 788999999999
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+.|++|+.............. ..+....+.+++..+++++.+ +.+++||+....... .....|.
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~s~s~d-------------~~~~~~d~~~~~~~~-~~~~~~~ 171 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHT--KDVLSVAFSSDNRQIVSGSRD-------------KTIKLWNTLGVCKYT-VQDESHS 171 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEE-ECSSSCS
T ss_pred ccceEEeecccceeeeecCCC--CceeEEEEeecCccceeecCC-------------CeEEEEEeCCCceEE-EEecccc
Confidence 999999999988777666554 578889999999999999988 599999998755443 3456788
Q ss_pred CcEEEEEEccCC--CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeE
Q 012699 294 PAITSLCFNHNG--KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVL 371 (458)
Q Consensus 294 ~~i~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 371 (458)
..+..++|++++ .++++++.|+.|++||+++++.+..+.+|.++|++++|+|++++|++++.|+.|++||+++.....
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY 251 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee
Confidence 899999999864 578899999999999999999999999999999999999999999999999999999999865544
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc---------cCCCCCcEEEEEECCCCCe
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR---------TLPHGAAITTVDWHPTLPM 442 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~---------~~~h~~~v~~~~~~~~~~~ 442 (458)
... ....+..++|+|++.++ +++.|+.|++||+++...... ..+|...|++++|+|++++
T Consensus 252 ~~~----------~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 252 TLD----------GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp EEE----------CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred eec----------CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 321 33468999999998765 456789999999987643322 2268899999999999999
Q ss_pred EEEecCCCcEEEEeCC
Q 012699 443 FLTGSADHSVQVMSLS 458 (458)
Q Consensus 443 l~s~~~dg~v~iw~l~ 458 (458)
|++|+.||.|+|||++
T Consensus 321 l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEEeCCCEEEEEeCC
Confidence 9999999999999973
No 40
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-44 Score=340.42 Aligned_cols=321 Identities=11% Similarity=0.127 Sum_probs=229.2
Q ss_pred ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC--
Q 012699 81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS-- 158 (458)
Q Consensus 81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-- 158 (458)
++..++++++.|++|++|++...... ......+.+|.+.|.+++|+|+
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~------------------------------~~~~~~l~~~~~~V~~v~wsp~~~ 220 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLH------------------------------CVKVQTIVHSFGEVWDLKWHEGCH 220 (524)
T ss_dssp -----------CEEEEEEEEETTTCC------------------------------EEEEEEEEECCCSEEEEEECSSCC
T ss_pred hhhhhhccCCCCceEEEEEccCCCCC------------------------------ceEEEEEEecCCcEEEEEECCCCC
Confidence 45667899999999999997542200 0023346678999999999996
Q ss_pred ----CCEEEEEeCCCcEEEEecCCCCCCC---------ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 159 ----GNNIASASVDGTVRIWTYDSSTPAS---------RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 159 ----~~~l~s~~~dg~v~iwd~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
+.+||+++.||+|++||+..+.... ......|...|.+++|++ + ..|++|+.||+|++||++++.
T Consensus 221 ~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~lasgs~DgtV~lWD~~~~~ 298 (524)
T 2j04_B 221 APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVVCGFKNGFVAEFDLTDPE 298 (524)
T ss_dssp CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEEEEETTSEEEEEETTBCS
T ss_pred CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEEEEeCCCEEEEEECCCCC
Confidence 5799999999999999998764320 112234668899999984 3 479999999999999999764
Q ss_pred -eeeeccCCCCCCceeee--eecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 226 -VVCDLNTTDAFPSVLDL--KCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 226 -~~~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
+...+..+. ..|.++ .++|++ .++++++.| ++|++||+++++....+........|.+++|
T Consensus 299 ~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~S~D-------------~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 299 VPSFYDQVHD--SYILSVSTAYSDFEDTVVSTVAVD-------------GYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp SCSEEEECSS--SCEEEEEEECCTTSCCEEEEEETT-------------SEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred CceEEeeccc--ccEEEEEEEcCCCCCeEEEEeccC-------------CeEEEEECCCCCcccccccccccCcccceEe
Confidence 333344444 689998 578887 889999998 5999999998877665542222134788999
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
+|+++.+++++.|++|++||++++.++..+.+|.+.|++++|+|++++|++|+.|++|++||+... .. .....
T Consensus 364 sp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~-----~~~~~ 436 (524)
T 2j04_B 364 CPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LL-----HGIKN 436 (524)
T ss_dssp ETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TT-----TCC--
T ss_pred CCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hc-----ccccc
Confidence 999999999999999999999999988889999999999999999999999999999999998642 10 00000
Q ss_pred C--CCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc-CCCcccccCCCCCcEEEEEECCCCC---eEEEecCCCcEEEE
Q 012699 382 P--ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR-GHASGMRTLPHGAAITTVDWHPTLP---MFLTGSADHSVQVM 455 (458)
Q Consensus 382 ~--~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~---~l~s~~~dg~v~iw 455 (458)
. ......+..++|+|+++.+.. ..+ ..+|+.. ++..+..+.+|...|++++|+|+++ +||+|+.||.||||
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~~-~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw 513 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYRI-DSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLE 513 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEEE-CCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEE
T ss_pred CccceeeeEEEEeccCCCCCeEEc-cCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEE
Confidence 0 012224778999999985532 222 2333332 2335566778999999999999965 99999999999999
Q ss_pred eCC
Q 012699 456 SLS 458 (458)
Q Consensus 456 ~l~ 458 (458)
++.
T Consensus 514 ~l~ 516 (524)
T 2j04_B 514 YLS 516 (524)
T ss_dssp ECS
T ss_pred Ecc
Confidence 974
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.9e-43 Score=323.33 Aligned_cols=333 Identities=15% Similarity=0.144 Sum_probs=269.7
Q ss_pred eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC
Q 012699 27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG 106 (458)
Q Consensus 27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 106 (458)
+++++| +|+|++|++++.|+.+++|+...+.....+... .......++.++.++++++.|+.+++|++....
T Consensus 59 ~~~~~~-s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-- 130 (420)
T 3vl1_A 59 GKGNTF-EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-- 130 (420)
T ss_dssp CTTCEE-EEEETTEEEEEETTEEEEEECCSEETTTTSCSC-----CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE--
T ss_pred ccceee-eecCCeEEEEEcCCcEEEEEecccceeeEEecC-----CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc--
Confidence 458999 999999999999999999999887665333211 112224566778899999999999999975422
Q ss_pred cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc
Q 012699 107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 186 (458)
....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... .
T Consensus 131 --------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~ 176 (420)
T 3vl1_A 131 --------------------------------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--T 176 (420)
T ss_dssp --------------------------------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE--E
T ss_pred --------------------------------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce--E
Confidence 445667999999999999999999999999999999999877653 3
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC----------------------CCCceeeeee
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD----------------------AFPSVLDLKC 244 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----------------------~~~~v~~~~~ 244 (458)
...|...|.+++|+ +++.+|++++.||.|++||+++++....+..+. +...+.+++|
T Consensus 177 ~~~h~~~v~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 177 LIGHRATVTDIAII-DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp EECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred EcCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 34578899999999 678899999999999999999999888776532 1245666778
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCC
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMS 323 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~ 323 (458)
+|++..+++++.+ |.|++||+++++....+. ..|...+.+++|+|+++ +|++|+.||.|++||++
T Consensus 256 s~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 256 GTYGKYVIAGHVS-------------GVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp SCTTEEEEEEETT-------------SCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred cCCCCEEEEEcCC-------------CeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 8999999999888 599999999988877764 45778899999999998 99999999999999999
Q ss_pred CCce-eeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC--
Q 012699 324 AGLQ-ITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-- 399 (458)
Q Consensus 324 ~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-- 399 (458)
+++. +..+.. |...|.++.+ |++++|++++.|+.|++|++....................+...+..++|+|+++
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 322 SPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp CTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred CCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 8754 667766 6778888855 5778999999999999999987544332222222222345677899999999999
Q ss_pred -EEEEEeCCccEEEEEccC
Q 012699 400 -RLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 400 -~l~~~~~~~~i~i~~~~~ 417 (458)
.|++++.+|.+.+|+++.
T Consensus 401 g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEEEEEETTTEEEEEESCC
T ss_pred ceEEEEcCCceEEEEeccC
Confidence 788888899999999864
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-42 Score=311.41 Aligned_cols=296 Identities=18% Similarity=0.224 Sum_probs=254.5
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
....+.+|.++|++++|+|++++|++++.||.|++||+.+++... ....|...|.+++|+ +++++|++++.||.|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--TLDGHTGTIWSIDVD-CFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--EECCCSSCEEEEEEC-TTSSEEEEEETTTEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--hhhhcCCcEEEEEEc-CCCCEEEEEeCCCeEEE
Confidence 455688999999999999999999999999999999998876543 334577899999999 68889999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-----------eEEe
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-----------MTVL 287 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-----------~~~~ 287 (458)
||+.+++....+.. ...+.+++|+|++..++++..+. ...+|.|++||+..... ...+
T Consensus 101 wd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~--------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 101 WDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNV--------MKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCB--------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCc--------cCCCCEEEEEEecCCccceeecccccceeeec
Confidence 99999998888772 36899999999999999988761 11124999999876542 2222
Q ss_pred ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
........+.+++|+|++++|++++.||.|++||+++ .+.+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 2222223899999999999999999999999999998 788889999999999999999999999999999999999998
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc--------------cEEEEEccCCCcccccCCCCCcEE
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV--------------RAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~--------------~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
........ +...+..++|+|+++++++++.++ .+++||+.+......+.+|...|+
T Consensus 250 ~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~ 319 (369)
T 3zwl_B 250 LQVLKKYE----------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLN 319 (369)
T ss_dssp CCEEEEEE----------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEE
T ss_pred Cceeeeec----------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEE
Confidence 65544322 456689999999999999999988 899999999988888889999999
Q ss_pred EEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 433 TVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+++|+|++++|++++.||.|++|+++
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECc
Confidence 99999999999999999999999974
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.8e-42 Score=316.18 Aligned_cols=301 Identities=12% Similarity=0.144 Sum_probs=243.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcE
Q 012699 138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGI 216 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 216 (458)
...+.+.+|.+.|++++|+|++ ++|++|+.||+|++||+.+++.........+...|.+++|+|.++.+|++++.|+.|
T Consensus 64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 3566888999999999999998 999999999999999999877654333345788999999996578999999999999
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
++||+.+...........+...+.+++|+|++..+++++.+ |.|++||++ ++....+. .|...|
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~-~~~~~~~~--~h~~~v 207 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST-------------GRLLLLGLD-GHEIFKEK--LHKAKV 207 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETT-------------SEEEEEETT-SCEEEEEE--CSSSCE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCC-------------CCEEEEECC-CCEEEEec--cCCCcE
Confidence 99999964443333333344679999999999999999988 599999994 56666554 677889
Q ss_pred EEEEEccCCC-EEEEEecCCeEEEEeCCC----CceeeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEeccCCCee
Q 012699 297 TSLCFNHNGK-ILAASAVDGMIHMFDMSA----GLQITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 297 ~~~~~~~~~~-~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
.+++|+|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++....
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 9999999998 999999999999999998 5566665 6999999999999 9999999999999999999976553
Q ss_pred EEeecCCcc-cC-------CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC--CCCcEEEEEECCCC
Q 012699 371 LWTRNCSRF-CD-------PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP--HGAAITTVDWHPTL 440 (458)
Q Consensus 371 ~~~~~~~~~-~~-------~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~ 440 (458)
......... .. .......+..++|+|++++ +++.|+.|++||+.+++.+..+.+ |...+..++|+|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 322211100 00 0011234555777777777 778899999999998877777765 56788888999999
Q ss_pred CeEEEecCCCcEEEEeCC
Q 012699 441 PMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l~ 458 (458)
++|++|+ ||.|+||+++
T Consensus 365 ~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 365 DVLASGM-GFNILIWNRE 381 (383)
T ss_dssp SEEEEEE-TTEEEEEECC
T ss_pred cEEEEec-CCcEEEEecC
Confidence 9999997 9999999985
No 44
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.6e-42 Score=309.51 Aligned_cols=307 Identities=18% Similarity=0.251 Sum_probs=244.2
Q ss_pred hhccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
...+|+||...|++++| +|+ +++||||+.|++++||++......
T Consensus 30 l~~tL~GH~~~V~~v~~-sp~~~~~l~S~s~D~~i~vWd~~~~~~~---------------------------------- 74 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIAT-TPQFPDMILSASRDKTIIMWKLTRDETN---------------------------------- 74 (340)
T ss_dssp EEEEECCCSSCEEEEEE-CTTCTTEEEEEETTSCEEEEEECCSSSC----------------------------------
T ss_pred EEEEECCccCCEEEEEE-eCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------------------
Confidence 34579999999999999 887 689999999999999997654100
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
...+.+.+++|...|.+++|+|++++|++++.|+.|++|
T Consensus 75 -----------------------------------------~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 75 -----------------------------------------YGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp -----------------------------------------SEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -----------------------------------------cceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence 001445678999999999999999999999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC--CeEE
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE--PIFV 252 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~ 252 (458)
+........ ....+...+....+. +++.+|++++.|+.+++||+........ ....+...+..+++++++ ..++
T Consensus 114 ~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 114 DLTTGTTTR--RFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTV-QDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp ETTTTEEEE--EEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEE-CSSSCSSCEEEEEECSCSSSCEEE
T ss_pred eecccceee--eecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEE-EeccccCcccceEEccCCCCcEEE
Confidence 987765432 333455667777887 7788899999999999999886654432 223344678888888765 4567
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 332 (458)
+++.+ +.|++||+++++....+. +|...|++++|+|++++|++|+.||.|++||+++.+++..+.
T Consensus 190 s~~~d-------------~~i~i~d~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 254 (340)
T 4aow_A 190 SCGWD-------------KLVKVWNLANCKLKTNHI--GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD 254 (340)
T ss_dssp EEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEcCC-------------CEEEEEECCCCceeeEec--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec
Confidence 77777 599999999988877764 678899999999999999999999999999999999988887
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
. ...|.+++|+|++. +++++.|+.|++||+++..................+...|.+++|+|+|++|++|+.||.|+|
T Consensus 255 ~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 255 G-GDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp C-SSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred C-CceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 5 46799999999885 556677999999999876554443333333344567889999999999999999999999999
Q ss_pred EEccCCC
Q 012699 413 YQVRGHA 419 (458)
Q Consensus 413 ~~~~~~~ 419 (458)
||+.++.
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9998864
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-43 Score=327.08 Aligned_cols=323 Identities=12% Similarity=0.232 Sum_probs=256.7
Q ss_pred CCCcCCCcceeccCCCeeeeeeeeee-ccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCC---CCCCCccccccCCC
Q 012699 118 LYTENGRDAQGEEDFPEVKVDFLETF-LGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDS---STPASRNATIYCGT 192 (458)
Q Consensus 118 ~~~~~g~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~~~~~~ 192 (458)
.|+|++..++....+. ...+.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +..........|..
T Consensus 34 ~f~~~~~~~~~~~~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~ 112 (437)
T 3gre_A 34 EFGPIQEIVRSPNMGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSS 112 (437)
T ss_dssp GGCCCCCCCCCCCGGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSS
T ss_pred hcCCcccccccccccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCC
Confidence 4677777777655433 334567778 89999999999999 999999999999999999876 44222233445788
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcC---CCceeeeccCC--------C--CCCceeeee--ecCCCCeEEEeecc
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVD---AKRVVCDLNTT--------D--AFPSVLDLK--CSPVEPIFVSAAAS 257 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~--------~--~~~~v~~~~--~~~~~~~~~~~~~~ 257 (458)
.|.+++|+ +++.+|++++.||.|++||++ +++.......+ . +...+.++. +++++..+++++.+
T Consensus 113 ~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 113 TVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 99999999 688899999999999999995 44443322211 1 223455555 55778888888887
Q ss_pred cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCC
Q 012699 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDS 336 (458)
Q Consensus 258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~ 336 (458)
|.|++||+++++....+....|...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..
T Consensus 192 -------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 258 (437)
T 3gre_A 192 -------------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHA 258 (437)
T ss_dssp -------------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCE
T ss_pred -------------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCC
Confidence 59999999999998888754477899999999999999999999999999999999988886 7888
Q ss_pred CeEEEEEcC----CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-----ccC----------C--CCCCCceeEEEEc
Q 012699 337 AISSILFGP----DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-----FCD----------P--ESSKSCRHEMALD 395 (458)
Q Consensus 337 ~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~----------~--~~~~~~v~~~~~s 395 (458)
+|.+++|+| ++.+|++++.||.|++||+++............ ... . ..+...|.+++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 999996654 678999999999999999997765443321110 000 1 1267789999999
Q ss_pred cCCCEEEEEeCCccEEEEEccCCCcccccCC-------------------------------------CCCcEEEEEECC
Q 012699 396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-------------------------------------HGAAITTVDWHP 438 (458)
Q Consensus 396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------------------------------h~~~v~~~~~~~ 438 (458)
++++|++++.|+.|++||+.+.+....+.+ |...|++++|++
T Consensus 339 -~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~ 417 (437)
T 3gre_A 339 -NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCE 417 (437)
T ss_dssp -TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEE
T ss_pred -CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeec
Confidence 889999999999999999988765554443 899999999999
Q ss_pred C--CCeEEEecCCCcEEEEe
Q 012699 439 T--LPMFLTGSADHSVQVMS 456 (458)
Q Consensus 439 ~--~~~l~s~~~dg~v~iw~ 456 (458)
+ +.+|++|+.||.|+||+
T Consensus 418 ~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 418 VDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp SSSSEEEEEEETTSCEEEEC
T ss_pred cCCceEEEEEcCCceEEEeC
Confidence 8 77999999999999995
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.6e-41 Score=299.78 Aligned_cols=291 Identities=18% Similarity=0.271 Sum_probs=248.8
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
...+.+|...|++++| +|++++|++|+.|+.+++|+...+.
T Consensus 16 ~~~~~gh~~~v~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~~-------------------------------------- 56 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGK-------------------------------------- 56 (312)
T ss_dssp EEEECCCSSCEEEEEE-CTTSSEEEEEETTSCEEEEETTTCC--------------------------------------
T ss_pred EEEEcccCCcEEEEEE-CCCCCEEEEeeCCCeEEEEeCCCcc--------------------------------------
Confidence 4578899999999999 9999999999999999999865431
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
....+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 57 ------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 57 ------------------------------------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ------------------------------------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 22345689999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeec
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA 256 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 256 (458)
.+++... ....+...|.+++|+ +++++|++++.||.|++||+++++....+..+. .++.+++|+|++..+++++.
T Consensus 95 ~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 95 SSGKCLK--TLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp TTCCEEE--EEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred CCCcEEE--EEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC--CcEEEEEEcCCCCEEEEEeC
Confidence 8876543 334567889999999 678899999999999999999999888877654 68999999999999999998
Q ss_pred ccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC
Q 012699 257 SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 257 ~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
+ |.|++||+++++....+. ..+...+..++|+|++++|++++.||.|++||+++++.+..+.+|..
T Consensus 170 d-------------~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 170 D-------------GLCRIWDTASGQCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp T-------------SCEEEEETTTCCEEEEEC-CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred C-------------CcEEEEECCCCceeeEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 8 599999999988877764 34556799999999999999999999999999999999999988876
Q ss_pred CeEE---EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe--CCccEE
Q 012699 337 AISS---ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS--GSVRAP 411 (458)
Q Consensus 337 ~v~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~ 411 (458)
...+ ....+++.+|++++.||.|++||+.+...... ...|...+.+++|+|++++|++++ .|+.|+
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~---------~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK---------LQGHTDVVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE---------ECCCSSCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh---------hhccCCcEEEEeecCcCCceEEEEccCCccEE
Confidence 5432 23346788999999999999999987654332 235777899999999999999987 689999
Q ss_pred EEEcc
Q 012699 412 IYQVR 416 (458)
Q Consensus 412 i~~~~ 416 (458)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
No 47
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-42 Score=307.16 Aligned_cols=298 Identities=15% Similarity=0.212 Sum_probs=227.5
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
.++.|.+|...|.+++| +++ +||+|+.|+++++|+...+..
T Consensus 6 ~~~~~~~h~~~v~~~~~-s~~--~las~~~D~~i~lw~~~~~~~------------------------------------ 46 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDF-SQG--ILATGSTDRKIKLVSVKYDDF------------------------------------ 46 (330)
T ss_dssp EEEEEECCSSCEEEEEE-ETT--EEEEEESSSCEEEEECSSSCC------------------------------------
T ss_pred cceeeccCCCceeeecc-CCC--EEEEEcCCCEEEEEEecCCCe------------------------------------
Confidence 46789999999999999 877 999999999999998754310
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee-c-cCCCCeEEEEeCCCCCEEEEEeCCCcEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF-L-GHTSPISCCRFSSSGNNIASASVDGTVRI 173 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 173 (458)
.....+ . +|.+.|++++|+|++++|++|+.|++|++
T Consensus 47 ------------------------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 47 ------------------------------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp ------------------------------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ------------------------------------------EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 011122 2 49999999999999999999999999999
Q ss_pred EecCCCCC-----CCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC----ceeeeccCCCCCCceeeeee
Q 012699 174 WTYDSSTP-----ASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK----RVVCDLNTTDAFPSVLDLKC 244 (458)
Q Consensus 174 wd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~~~~~v~~~~~ 244 (458)
||+..... ........|...|.+++|+ +++++|++++.|++|++||+... +++..+..+. ..|.+++|
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--~~v~~v~~ 161 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--QDVKHVIW 161 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--SCEEEEEE
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--CceEEEEE
Confidence 99864321 1111234577899999999 67899999999999999999532 3444555444 68999999
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeC
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDM 322 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~ 322 (458)
+|++..+++++.| +.|++||..++.......+.+|...|.+++|+|+ +.+|++|+.|+.|++||+
T Consensus 162 ~p~~~~l~s~s~D-------------~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 162 HPSEALLASSSYD-------------DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp CSSSSEEEEEETT-------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEEcCC-------------CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 9999999999998 5999999987643333345688899999999998 778999999999999998
Q ss_pred CCC--------ceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC-ceeEE
Q 012699 323 SAG--------LQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS-CRHEM 392 (458)
Q Consensus 323 ~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 392 (458)
+.+ .....+.. |...|.+++|++++ +|++++.||.|++||..++....... ....|.. .+.++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~------~~~~h~~~~v~~v 301 (330)
T 2hes_X 229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK------RALCHGVYEINVV 301 (330)
T ss_dssp EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE------ESCTTTTSCEEEE
T ss_pred cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec------cccccccceEEEE
Confidence 764 34445554 89999999999766 89999999999999987653111110 0123444 79999
Q ss_pred EEcc--CCCEEEEEeCCccEEEEEccC
Q 012699 393 ALDV--NGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 393 ~~s~--~g~~l~~~~~~~~i~i~~~~~ 417 (458)
+|+| ++++|++++.|+.|++|+++.
T Consensus 302 ~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 302 KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999 789999999999999999864
No 48
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-42 Score=322.69 Aligned_cols=299 Identities=12% Similarity=0.153 Sum_probs=236.0
Q ss_pred eeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 140 LETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
.....+|...|+||+|+| ++++||+|+.||+|+|||+.+++.........|...|.+++|+|.++.+|++++.||+|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 345668999999999999 5678999999999999999887665444455688899999999778899999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||++++........+.....+.+++|+|++.++++++.+ |.|++||++. +.+.. +..|...|.+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-------------g~i~~wd~~~-~~~~~--~~~h~~~v~~ 255 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNV-------------GNVILLNMDG-KELWN--LRMHKKKVTH 255 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSS-------------SBEEEEESSS-CBCCC--SBCCSSCEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCC-------------CcEeeeccCc-ceeEE--EecccceEEe
Confidence 999887655544444444568899999999999999988 5999999975 33333 4578889999
Q ss_pred EEEccCCC-EEEEEecCCeEEEEeCCCCceee---eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEee
Q 012699 299 LCFNHNGK-ILAASAVDGMIHMFDMSAGLQIT---GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR 374 (458)
Q Consensus 299 ~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 374 (458)
++|+|++. +|++|+.|+.|++||+++.+... ...+|...|++++|+|++++|++++.||.|++||+.+........
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 99999876 78899999999999998865443 335799999999999999999999999999999999876554332
Q ss_pred cCCcccCCCCCCCceeEEEEccCCCEEEEEe------------CCccEEEEEccCCCcccccC-CCCCcEEEE-EECCCC
Q 012699 375 NCSRFCDPESSKSCRHEMALDVNGRRLLVTS------------GSVRAPIYQVRGHASGMRTL-PHGAAITTV-DWHPTL 440 (458)
Q Consensus 375 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~------------~~~~i~i~~~~~~~~~~~~~-~h~~~v~~~-~~~~~~ 440 (458)
.... .......+....|+|++.+++++. .++.|++||..++.....+. +|...|.++ +|+|+|
T Consensus 336 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg 412 (435)
T 4e54_B 336 PHPH---RHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG 412 (435)
T ss_dssp CCCC---CCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS
T ss_pred cccc---cccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC
Confidence 1111 001111233455666666665553 23579999999887766655 688889887 699999
Q ss_pred CeEEEecCCCcEEEEeCC
Q 012699 441 PMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l~ 458 (458)
++|++|+ |+.|+||++.
T Consensus 413 ~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 413 DTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp SCEEEEC-SSEEEECCCC
T ss_pred CEEEEEc-CCcEEEEECC
Confidence 9999876 8899999974
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-41 Score=335.20 Aligned_cols=294 Identities=17% Similarity=0.240 Sum_probs=244.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCC---ccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 138 DFLETFLGHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPAS---RNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
.....+++|++.|++++|+|++ ++|+||+.|++|++|++....... ......|...|.+++|+ +++++|++|+.|
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~l~sgs~D 451 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWD 451 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCEEEEEeCC
Confidence 3456789999999999999864 789999999999999997654321 12344577899999999 788999999999
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGED 292 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~ 292 (458)
|.|++||+.+++....+..|. ..|.+++|+|++..+++++.| +.|++||.......... ...+|
T Consensus 452 g~v~vwd~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D-------------~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 452 GELRLWDLAAGVSTRRFVGHT--KDVLSVAFSLDNRQIVSASRD-------------RTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp SEEEEEETTTTEEEEEEECCS--SCEEEEEECTTSSCEEEEETT-------------SCEEEECTTSCEEEEECSSTTSC
T ss_pred CcEEEEECCCCcceeEEeCCC--CCEEEEEEeCCCCEEEEEeCC-------------CEEEEEECCCCcceeeccCCCCC
Confidence 999999999999888877665 689999999999999999998 59999998764433322 12467
Q ss_pred CCcEEEEEEccCC--CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 293 PPAITSLCFNHNG--KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 293 ~~~i~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
...|.+++|+|++ ..|++|+.|+.|++||+++++....+.+|.+.|++++|+|++++|++++.||.|++||+.+.+..
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~ 596 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence 7889999999986 68999999999999999999999999999999999999999999999999999999999986543
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-------------------CCCcE
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-------------------HGAAI 431 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-------------------h~~~v 431 (458)
... .....+.+++|+|++.+|++++. +.|++||+.+...+..+.. +...+
T Consensus 597 ~~~----------~~~~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
T 3dm0_A 597 YSL----------EANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665 (694)
T ss_dssp ECC----------BCSSCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred EEe----------cCCCcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence 311 13456999999999998887765 4599999988754433321 11247
Q ss_pred EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 432 TTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++++|+|+|++|++|+.||+|+||++.
T Consensus 666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 666 TSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 899999999999999999999999984
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.6e-42 Score=315.81 Aligned_cols=304 Identities=12% Similarity=0.122 Sum_probs=251.9
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC----CCccccccCCCceEEEEEecCC----C---eE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP----ASRNATIYCGTEIMSLEWECKS----D---RL 206 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~----~---~~ 206 (458)
...+.+.+|.++|++++|+| ++|++|+.||+|++||+.+.+. ........+...|.+++|+ ++ + .+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL-QAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEE-EEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEe-cccccCCccccE
Confidence 46677889999999999999 7999999999999999988761 1122344577899999999 55 8 89
Q ss_pred EEEEcCCCcEEEEEcCCCce-----eeeccCCCC---CCceeeeeec----CCCCe-EEEeecccCCCCcceeeccceeE
Q 012699 207 LLIGTADGGIKAWNVDAKRV-----VCDLNTTDA---FPSVLDLKCS----PVEPI-FVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 207 l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~---~~~v~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
|++++.||.|++||+.+++. ...+..+.. ...|.+++|+ |++.. +++++.+ |.|
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------------g~i 150 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------------GTT 150 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------------SCE
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------------CcE
Confidence 99999999999999998886 666665531 2689999999 99999 9999887 599
Q ss_pred EEEECCC------CceeE-----Eeec-----CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC---C
Q 012699 274 TVWNMKT------WKAMT-----VLPL-----GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA---H 334 (458)
Q Consensus 274 ~i~d~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~ 334 (458)
++||+++ ++... .+.. ..|...+.+++|+|++ +|++++.||.|++||+++++.+..+.. |
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 9999998 66555 5543 4567889999999999 999999999999999999999999998 9
Q ss_pred ---CCCeEEEEEcCCCCEEEEecCC---CeEEEEeccCCCeeEEeecCC----cccCCCCCCCceeEEEEccCCCEEEEE
Q 012699 335 ---DSAISSILFGPDETSIFSLGSD---GKIIEWSLQNQGQVLWTRNCS----RFCDPESSKSCRHEMALDVNGRRLLVT 404 (458)
Q Consensus 335 ---~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~ 404 (458)
...|.+++|+|++++|++++.| +.|++||+++.+......... .......+...+.+++|+|++++|+++
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 9999999999999999999999 999999999875544322100 000011167789999999999999999
Q ss_pred eCCccEEEEEccCCCcccccC------CC---------------CCcEEEEEECCCC----------CeEEEecCCCcEE
Q 012699 405 SGSVRAPIYQVRGHASGMRTL------PH---------------GAAITTVDWHPTL----------PMFLTGSADHSVQ 453 (458)
Q Consensus 405 ~~~~~i~i~~~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~----------~~l~s~~~dg~v~ 453 (458)
+.|+.|++||+.+.+....+. +| ...|++++|+|++ ++|++++.||.|+
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 999999999999887777776 67 9999999999998 7999999999999
Q ss_pred EEeCC
Q 012699 454 VMSLS 458 (458)
Q Consensus 454 iw~l~ 458 (458)
+|+++
T Consensus 390 iw~~~ 394 (397)
T 1sq9_A 390 WFREA 394 (397)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 99973
No 51
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-41 Score=312.22 Aligned_cols=294 Identities=15% Similarity=0.215 Sum_probs=241.4
Q ss_pred cCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeee-e-------------ccCCceeeeeCCccceeE
Q 012699 21 KNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMG-S-------------AEMGQTWASSRPALSRFA 86 (458)
Q Consensus 21 ~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~l 86 (458)
.+|...|.|++| +|||++||+|+ ++++++|+...+.....+.... . ..+.....+.++++++++
T Consensus 61 ~~h~~~V~~v~f-spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKF-SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEE-CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEE-CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 369999999999 99999999987 6899999998876542221110 0 011124467788889999
Q ss_pred eeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe
Q 012699 87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS 166 (458)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 166 (458)
++++.|+++++|++.... .+..+.+|...|++++|+|++++|++++
T Consensus 139 ~s~~~d~~i~iwd~~~~~----------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s 184 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRK----------------------------------IVMILQGHEQDIYSLDYFPSGDKLVSGS 184 (393)
T ss_dssp EEEETTSCEEEEETTTTE----------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCc----------------------------------EEEEEccCCCCEEEEEEcCCCCEEEEec
Confidence 999999999999975422 4567889999999999999999999999
Q ss_pred CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC-----CCCCCceee
Q 012699 167 VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-----TDAFPSVLD 241 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~v~~ 241 (458)
.|++|++||+.+++... ...+...+.+++|+|.++.+|++++.||.|++||+++++.+..+.. ..+...|.+
T Consensus 185 ~d~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 185 GDRTVRIWDLRTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp TTSEEEEEETTTTEEEE---EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred CCCcEEEEECCCCeeEE---EEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 99999999998876532 3345678999999976899999999999999999999987766532 234478999
Q ss_pred eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee----------EEeecCCCCCcEEEEEEccCCCEEEEE
Q 012699 242 LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM----------TVLPLGEDPPAITSLCFNHNGKILAAS 311 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~----------~~~~~~~~~~~i~~~~~~~~~~~l~~~ 311 (458)
++|+|++..+++++.| |.|++||+++.... ....+.+|...|.+++|+|++.+|++|
T Consensus 262 v~~~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 328 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLD-------------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328 (393)
T ss_dssp EEECTTSSEEEEEETT-------------SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE
T ss_pred EEECCCCCEEEEEeCC-------------CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEE
Confidence 9999999999999988 59999999764321 122334688889999999999999999
Q ss_pred ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC------CCCEEEEecCCCeEEEEeccC
Q 012699 312 AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP------DETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+.|+.|++||+++++++..+.+|...|.+++|+| ++++|++++.||+|++|++.+
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9999999999999999999999999999999986 678999999999999999875
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.5e-41 Score=308.66 Aligned_cols=290 Identities=12% Similarity=0.123 Sum_probs=244.5
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
+..|.++|++++|+|++++|++++.|+.|++||+.+++.........|...|.+++|+ +++++|++++.||.|++||++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEE-TTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEe-CCCCEEEEEcCCCeEEEEECC
Confidence 4569999999999999999999999999999999887522222344577899999999 688999999999999999999
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---eEEeecCCCCCcEEEE
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA---MTVLPLGEDPPAITSL 299 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~---~~~~~~~~~~~~i~~~ 299 (458)
+++.........+...+.+++|+|++..+++++.+ |.|++||++..+. ...+ ...|...|.++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~ 148 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS-------------RVISICYFEQENDWWVCKHI-KKPIRSTVLSL 148 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETT-------------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCC-------------CEEEEEEecCCCcceeeeee-ecccCCCeeEE
Confidence 98866665544555789999999999999999988 5999999988764 2222 35677899999
Q ss_pred EEccCCCEEEEEecCCeEEEEeC------------------CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 300 CFNHNGKILAASAVDGMIHMFDM------------------SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
+|+|++++|++++.||.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 99999999999999999999995 367888888899999999999999999999999999999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC--CC--------------------
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG--HA-------------------- 419 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~--~~-------------------- 419 (458)
||+++.+...... .+...+.+++|+|++++|+++ .++.|++|++.. +.
T Consensus 229 ~d~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 229 ADADKKMAVATLA---------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp EEGGGTTEEEEEE---------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred EECCCCceeEEEc---------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 9999876544322 355679999999999998887 899999999987 21
Q ss_pred ------------cc------ccc-CCCCCcEEEEEEC-CCC---CeEEEecCCCcEEEEeC
Q 012699 420 ------------SG------MRT-LPHGAAITTVDWH-PTL---PMFLTGSADHSVQVMSL 457 (458)
Q Consensus 420 ------------~~------~~~-~~h~~~v~~~~~~-~~~---~~l~s~~~dg~v~iw~l 457 (458)
.. ..+ .+|..+|++++|+ ++| ++|++|+.||.|++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 00 223 3899999999976 666 89999999999999996
No 53
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.8e-41 Score=312.00 Aligned_cols=322 Identities=16% Similarity=0.264 Sum_probs=271.4
Q ss_pred hhccccCCCcce-eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETI-KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i-~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
..+.|.+|...| +|+++ +|++|++|+.|+++++|+..++.
T Consensus 110 ~~~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~------------------------------------ 150 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGK------------------------------------ 150 (445)
T ss_dssp CCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCC------------------------------------
T ss_pred eeEEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCCc------------------------------------
Confidence 356788999875 66555 68999999999999999875441
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
.+..+.+|.+.|.+++|+ +++|++|+.||+|++|
T Consensus 151 --------------------------------------------~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 151 --------------------------------------------CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp --------------------------------------------EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred --------------------------------------------EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 334556899999999997 5699999999999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
|+.+++... ....|...|.++.|+ +..+++++.||.|++||+.+++....+..+. ..+.++.+ ++..++++
T Consensus 185 d~~~~~~~~--~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 185 NAETGECIH--TLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHV--AAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp ETTTTEEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCS--SCEEEEEE--CSSCEEEE
T ss_pred ECCcCcEEE--EECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCc--ccEEEEEE--CCCEEEEE
Confidence 998876543 334577889999996 4679999999999999999999888877655 67889888 67889998
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
+.+ |.|++||+++++....+. .|...|.+++| ++.++++|+.||.|++||+++++.+..+.+|
T Consensus 256 ~~d-------------g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 256 AYD-------------FMVKVWDPETETCLHTLQ--GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp ETT-------------SCEEEEEGGGTEEEEEEC--CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred cCC-------------CEEEEEECCCCcEeEEec--CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC
Confidence 888 599999999988887764 67788999999 7889999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEE
Q 012699 335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~ 414 (458)
...+.++.++ +++|++++.||.|++||+++....... .....+...+.+++|+ +++|++++.||.|++||
T Consensus 319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTL------QGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------CSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEE------ccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 9999988874 669999999999999999876554322 2223467789999995 68999999999999999
Q ss_pred ccCCCccccc-----CCCCCcEEEEEECCCCCeEEEecCCCc----EEEEeCC
Q 012699 415 VRGHASGMRT-----LPHGAAITTVDWHPTLPMFLTGSADHS----VQVMSLS 458 (458)
Q Consensus 415 ~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~l~s~~~dg~----v~iw~l~ 458 (458)
+.+++.+..+ .+|...|++++|+|++.+|++|+.||+ |.|||++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 389 LKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence 9988766555 368899999999999999999999998 9999985
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.5e-40 Score=312.72 Aligned_cols=323 Identities=17% Similarity=0.286 Sum_probs=261.3
Q ss_pred hccccCCCcce-eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 17 LSRLKNNSETI-KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 17 ~~~l~~h~~~i-~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
...|.+|...| +|+++ ++.+|++|+.|+++++|+...++
T Consensus 114 ~~~l~~h~~~v~~~~~~---~~~~l~sgs~dg~i~vwd~~~~~------------------------------------- 153 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF---EDNYVITGADDKMIRVYDSINKK------------------------------------- 153 (464)
T ss_dssp EEEEECCSSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTE-------------------------------------
T ss_pred eEEEcCCCCCcEEEEEE---CCCEEEEEcCCCcEEEEECCCCc-------------------------------------
Confidence 34788898885 66666 56799999999999999865441
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEe
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWT 175 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 175 (458)
.+..+.+|.+.|++++|+|++ +|++|+.||+|++||
T Consensus 154 -------------------------------------------~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 154 -------------------------------------------FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp -------------------------------------------EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred -------------------------------------------EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 344566899999999999988 999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcCCCceeeecc---------------------CC
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVDAKRVVCDLN---------------------TT 233 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---------------------~~ 233 (458)
+.+++... ....|...|.+++|++ +++.++++++.||.|++||+.++....... ..
T Consensus 190 ~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 190 IKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp TTTTEEEE--EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred CCCCcEEE--EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 98876543 3345778999999986 567899999999999999998876432111 11
Q ss_pred CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699 234 DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313 (458)
Q Consensus 234 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (458)
.+...+.++ ++++..+++++.+ |.|++||+++++....+. .|...|.+++|+|+++++++|+.
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~ 330 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSYD-------------NTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASM 330 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEETT-------------SCEEEEETTTTEEEEEEC--CCSSCEEEEEEETTTTEEEEEET
T ss_pred CccceEEEE--cCCCCEEEEEeCC-------------CeEEEEECCCCcEEEEec--CCCCCEEEEEEcCCCCEEEEEeC
Confidence 122345444 6778888888887 599999999988887764 67788999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
||.|++||+++++++..+.+|...|.+++|+ +++|++++.||.|++||+.+....... .+...+..++
T Consensus 331 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----------~~~~~~~~~~ 398 (464)
T 3v7d_B 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----------HHTNLSAITT 398 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----------ECTTCCCEEE
T ss_pred CCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----------cCCCCccEEE
Confidence 9999999999999999999999999999997 579999999999999999986554432 1344577889
Q ss_pred EccCCCEEEEEeCCccEEEEEccCCCcccc-cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMR-TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
|+|++++|++++ ++.|++||+.+++.+.. ..+|...|++++|+ ...++++++.||.+.+|-
T Consensus 399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 999999999988 89999999999877665 55899999999997 345666677787665553
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.9e-42 Score=317.66 Aligned_cols=321 Identities=12% Similarity=0.113 Sum_probs=257.4
Q ss_pred eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699 77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS 156 (458)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 156 (458)
+.+++++.++++++.|+.+++|++.... ....+..| ..+....|+
T Consensus 62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~----------------------------------~~~~~~~~-~~~~~~~~~ 106 (420)
T 3vl1_A 62 NTFEKVGSHLYKARLDGHDFLFNTIIRD----------------------------------GSKMLKRA-DYTAVDTAK 106 (420)
T ss_dssp CEEEEEETTEEEEEETTEEEEEECCSEE----------------------------------TTTTSCSC-CEEEEEEEC
T ss_pred eeeeecCCeEEEEEcCCcEEEEEecccc----------------------------------eeeEEecC-CceEEEEEe
Confidence 4555668889999999999999975532 11122344 445556789
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF 236 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 236 (458)
|++++|++|+.||.|++||+.+++... ....|...|.+++|+ +++++|++++.|+.|++||+.+++....+..+.
T Consensus 107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-- 181 (420)
T 3vl1_A 107 LQMRRFILGTTEGDIKVLDSNFNLQRE--IDQAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR-- 181 (420)
T ss_dssp SSSCEEEEEETTSCEEEECTTSCEEEE--ETTSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCS--
T ss_pred cCCCEEEEEECCCCEEEEeCCCcceee--ecccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC--
Confidence 999999999999999999998765532 234678899999999 678899999999999999999999888776554
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-CCCCcEEEE----------------
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-EDPPAITSL---------------- 299 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~---------------- 299 (458)
..|.+++|+|++..+++++.+ |.|++||+++++....+... .+...+.++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLD-------------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETT-------------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred CcEEEEEEcCCCCEEEEEcCC-------------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 789999999999999999988 59999999999888877532 233444444
Q ss_pred -----EEccCCCEEEEEecCCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEE
Q 012699 300 -----CFNHNGKILAASAVDGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 300 -----~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
+|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +|++++.||.|++||+++...+..
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 457889999999999999999999988777665 5788999999999998 999999999999999998654222
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc---------ccccCCCCCcEEEEEECCCCC--
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS---------GMRTLPHGAAITTVDWHPTLP-- 441 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~---------~~~~~~h~~~v~~~~~~~~~~-- 441 (458)
... ..+...+..+ +.|++++|++++.|+.|++|++..... .....+|...|.+++|+|+++
T Consensus 329 ~~~-------~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 400 (420)
T 3vl1_A 329 EFL-------INEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESN 400 (420)
T ss_dssp EEE-------ESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSS
T ss_pred hhh-------ccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCc
Confidence 111 1244567777 556889999999999999999987422 223447889999999999999
Q ss_pred -eEEEecCCCcEEEEeCC
Q 012699 442 -MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 442 -~l~s~~~dg~v~iw~l~ 458 (458)
.|++++.+|.+.+|+++
T Consensus 401 g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 401 GEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEEEEETTTEEEEEESC
T ss_pred ceEEEEcCCceEEEEecc
Confidence 77788889999999985
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-41 Score=309.61 Aligned_cols=300 Identities=13% Similarity=0.173 Sum_probs=243.3
Q ss_pred eeccCCCCeEEEEeCCC----CCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCC---CeEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSS----GNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKS---DRLLLIGT 211 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~---~~~l~~~~ 211 (458)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++........ .+...|.+++|+|.. +.+|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999984 456666777789999999876654322222 255789999999542 67999999
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec-
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL- 289 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~- 289 (458)
.||.|++||+.+++.+..+..+. ..|.+++|+| ++..+++++.+ |.|++||+++++....+..
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHG--NAINELKFHPRDPNLLLSVSKD-------------HALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCC--SCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTTEEEEEECST
T ss_pred CCCEEEEEEchhceEeeeecCCC--CcEEEEEECCCCCCEEEEEeCC-------------CeEEEEEeecCeEEEEeccc
Confidence 99999999999999988887654 7899999999 89999999988 5999999999888777632
Q ss_pred CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----------------------------CCCCCeEEE
Q 012699 290 GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----------------------------AHDSAISSI 341 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----------------------------~~~~~v~~~ 341 (458)
..|...|.+++|+|++++|++++.||.|++||+++++....+. .|...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 4678899999999999999999999999999998876554433 399999999
Q ss_pred EEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC-----CcccCCCCCCCceeEEEEccC--CCEEEEEeCCccEEEEE
Q 012699 342 LFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC-----SRFCDPESSKSCRHEMALDVN--GRRLLVTSGSVRAPIYQ 414 (458)
Q Consensus 342 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~s~~--g~~l~~~~~~~~i~i~~ 414 (458)
+|+ +++|++++.|+.|++||+.+.......... ........+...+.+++|+|+ +++|++++.||.|++||
T Consensus 238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd 315 (366)
T 3k26_A 238 RWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWD 315 (366)
T ss_dssp EEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEE
T ss_pred EEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEE
Confidence 998 679999999999999999876441110000 001112345667899999999 99999999999999999
Q ss_pred ccCCCccc----ccCCC--CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 415 VRGHASGM----RTLPH--GAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 415 ~~~~~~~~----~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+.+..... .+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 316 LEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99875443 44556 7999999999999999999999999999974
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-41 Score=338.14 Aligned_cols=364 Identities=14% Similarity=0.184 Sum_probs=293.7
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
..++.+.+|...|++++| +|++++|++|+.|+.+++|+..++.....+. ...+....+.+++++.++++++.|+.
T Consensus 46 ~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~ 120 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKF-IARKNWIIVGSDDFRIRVFNYNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDDLT 120 (814)
T ss_dssp EEEEEEECCSSCEEEEEE-EGGGTEEEEEETTSEEEEEETTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred ceEEEEecCCCcEEEEEE-eCCCCEEEEEeCCCeEEEEECCCCcEEEEEe----cCCCCEEEEEEeCCCCEEEEEcCCCE
Confidence 456788899999999999 9999999999999999999998876543222 11233445666777889999999999
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI 173 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 173 (458)
+++|++.... .....+.+|..+|.+++|+| +++.|++++.||+|++
T Consensus 121 i~vw~~~~~~---------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 121 VKLWNWENNW---------------------------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp EEEEEGGGTS---------------------------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred EEEEECCCCc---------------------------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 9999986521 14556779999999999999 8899999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
||+.++..... ....+...+.+++|+| +++.++++++.||.|++||+.+++....+..+. ..+.+++|+|+++.++
T Consensus 168 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 168 WSLGQSTPNFT-LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIII 244 (814)
T ss_dssp EETTCSSCSEE-EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEE
T ss_pred EECCCCcceeE-EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEE
Confidence 99987665432 2223347899999995 278899999999999999999999888877654 6899999999999999
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC--EEEEEecCCeEEEEeCCCCceee-
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK--ILAASAVDGMIHMFDMSAGLQIT- 329 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~- 329 (458)
+++.+ |.|++||+.+++....+. .+...+.+++|+|++. +++++ .++.+.+|++.......
T Consensus 245 ~~~~d-------------g~v~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (814)
T 3mkq_A 245 SGSED-------------GTLKIWNSSTYKVEKTLN--VGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLS 308 (814)
T ss_dssp EEETT-------------SCEEEEETTTCSEEEEEC--CSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEE
T ss_pred EEeCC-------------CeEEEEECCCCcEEEEee--cCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeE
Confidence 99988 599999999998888775 4567899999999987 45554 56678888875432211
Q ss_pred ------------------------------------------eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 330 ------------------------------------------GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 330 ------------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
.+..+...+.+++|+|+|+++++++ |+.+.+|++...
T Consensus 309 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~ 387 (814)
T 3mkq_A 309 LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW 387 (814)
T ss_dssp ECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred ECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccc
Confidence 1123455688999999999999988 899999998643
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCC---CeEE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL---PMFL 444 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~ 444 (458)
... +...+.+++|+|+|+++++++.++.+++|+. +.+|...+.+++|+|++ ..|+
T Consensus 388 ~~~--------------~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~dg~~~~~l~ 445 (814)
T 3mkq_A 388 RNK--------------AFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAIDRLFSGALL 445 (814)
T ss_dssp EEE--------------EEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCCCEEECSSSE
T ss_pred ccc--------------CCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCccceecceEE
Confidence 221 1234778999999999999999999999963 23577789999999998 6899
Q ss_pred EecCCCcEEEEeCC
Q 012699 445 TGSADHSVQVMSLS 458 (458)
Q Consensus 445 s~~~dg~v~iw~l~ 458 (458)
+++.|+.|++||++
T Consensus 446 ~~~~d~~v~~~d~~ 459 (814)
T 3mkq_A 446 GVKSDGFVYFFDWD 459 (814)
T ss_dssp EEEETTEEEEECTT
T ss_pred EEecCCEEEEEECC
Confidence 99999999999974
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=303.70 Aligned_cols=298 Identities=14% Similarity=0.215 Sum_probs=242.9
Q ss_pred eeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCcccc-----------ccCCCceEEEEEecCCCeE
Q 012699 139 FLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNAT-----------IYCGTEIMSLEWECKSDRL 206 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~~ 206 (458)
....+.+|.++|++++|+| ++++|++|+.||+|++||+.++........ ..+...|.+++|+|.++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 4456778999999999999 999999999999999999998776543221 1377899999999668889
Q ss_pred EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC---eEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP---IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
|++++.||.|++||+.+++....+... ..+..+.+.|.+. .+++++.+ |.|++||+++++.
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~~~d~~~~~~ 178 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFNFE---ETVYSHHMSPVSTKHCLVAVGTRG-------------PKVQLCDLKSGSC 178 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEECSSCSSCCEEEEEESS-------------SSEEEEESSSSCC
T ss_pred EEEEeCCCeEEEeeCCCCccceeccCC---CceeeeEeecCCCCCcEEEEEcCC-------------CeEEEEeCCCcce
Confidence 999999999999999999988777643 5688888888554 88888877 5999999999888
Q ss_pred eEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCCCc-eeeee---------------eCCCCCeEEEEEcCC
Q 012699 284 MTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSAGL-QITGW---------------PAHDSAISSILFGPD 346 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~ 346 (458)
...+. .|...|.+++|+|+++ +|++|+.||.|++||++++. .+..+ ..|...|.+++|+|+
T Consensus 179 ~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 87764 6778899999999998 58999999999999998765 33333 578899999999999
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP 426 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 426 (458)
+++|++++.||.|++||+.+.......... ........+........+..+++++.++.|++||+.+...+..+.+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred CCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 999999999999999999986543211100 0011112222233334556677778899999999999988888889
Q ss_pred CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 427 HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 427 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|...|++++|+|++++|++++.||.|++|+++
T Consensus 333 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 333 HYKTVDCCVFQSNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence 99999999999999999999999999999974
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=304.48 Aligned_cols=298 Identities=14% Similarity=0.232 Sum_probs=239.4
Q ss_pred eeeeccCCCCeEEEEeCCCCCEE-EEEeC---CCcEEEEecCCCCCCCccccccCCCceEEEEEecCC--CeEEEEEcCC
Q 012699 140 LETFLGHTSPISCCRFSSSGNNI-ASASV---DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS--DRLLLIGTAD 213 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l-~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 213 (458)
...+.+|.+.|.+++|+|+++.+ ++++. |++|++||+.+++... .....+..+|.+++|+|.. +.+|++++.|
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 34567899999999999998655 56665 9999999998876542 2334677899999999543 7899999999
Q ss_pred CcEEEEEcCCCc-eeeeccCCCCCCceeee------eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeE
Q 012699 214 GGIKAWNVDAKR-VVCDLNTTDAFPSVLDL------KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMT 285 (458)
Q Consensus 214 g~i~~wd~~~~~-~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~ 285 (458)
|.|++||+.+++ ....+..+. ..+.++ +|+|+++.+++++.+ |.|++||+++++ ...
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d-------------~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHK--EIINAIDGIGGLGIGEGAPEIVTGSRD-------------GTVKVWDPRQKDDPVA 154 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCS--SCEEEEEEESGGGCC-CCCEEEEEETT-------------SCEEEECTTSCSSCSE
T ss_pred CeEEEEeCCCCCccEEEEEecc--cceEEEeeccccccCCCccEEEEEeCC-------------CeEEEEeCCCCCCcce
Confidence 999999999887 666666554 678888 567899999999988 599999999876 566
Q ss_pred EeecCC--CCCcEEEEE----EccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC---CCCEEEEecCC
Q 012699 286 VLPLGE--DPPAITSLC----FNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGP---DETSIFSLGSD 356 (458)
Q Consensus 286 ~~~~~~--~~~~i~~~~----~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d 356 (458)
.+.... ....+.+++ |+|++++|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.|
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 554321 134789998 788999999999999999999998887544 67889999999999 99999999999
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCCCc---------------
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGHAS--------------- 420 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~~~--------------- 420 (458)
|.|++||+++........ ......+...+.+++|+|+++ +|++++.||.|++||+.....
T Consensus 234 g~i~i~d~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~ 309 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFA----SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAG 309 (357)
T ss_dssp TEEEEEEEEEEETTTEEE----EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCC
T ss_pred CeEEEEeCcCCCccccee----eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccc
Confidence 999999998643221110 001225778899999999998 899999999999999986532
Q ss_pred ----ccccCCCCCcEEEEEECCCCCeEE-EecCCCcEEEEeCC
Q 012699 421 ----GMRTLPHGAAITTVDWHPTLPMFL-TGSADHSVQVMSLS 458 (458)
Q Consensus 421 ----~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~l~ 458 (458)
+..+.+|...|++++|+|++++|+ +++.||.|+||++.
T Consensus 310 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 310 SVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 233447999999999999999998 89999999999974
No 60
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-41 Score=310.47 Aligned_cols=335 Identities=12% Similarity=0.118 Sum_probs=228.0
Q ss_pred ccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccc
Q 012699 20 LKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSK 99 (458)
Q Consensus 20 l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 99 (458)
++.|...|++++| +|+|++||+|+.|+.+++|+...+..
T Consensus 7 ~~~~~~~v~~~~~-s~~g~~l~~~~~d~~i~iw~~~~~~~---------------------------------------- 45 (377)
T 3dwl_C 7 LHILPKPSYEHAF-NSQRTEFVTTTATNQVELYEQDGNGW---------------------------------------- 45 (377)
T ss_dssp EEECSSCCSCCEE-CSSSSEEECCCSSSCBCEEEEETTEE----------------------------------------
T ss_pred EecCCCcEEEEEE-CCCCCEEEEecCCCEEEEEEccCCce----------------------------------------
Confidence 4456778999999 99999999999999999998654310
Q ss_pred cccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC
Q 012699 100 LEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSS 179 (458)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 179 (458)
+.+..+.+|.+.|++++|+|++++|++++.|++|++||+.++
T Consensus 46 --------------------------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 46 --------------------------------------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp --------------------------------------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred --------------------------------------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 033456689999999999999999999999999999999887
Q ss_pred C-CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699 180 T-PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAA 255 (458)
Q Consensus 180 ~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 255 (458)
. .........+...|.+++|+ +++++|++++.|+.|++||+++++. ...+... +...|.+++|+|++..+++++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP-LRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCCEEECSS-CCSCEEEEEECTTSSEEEEEE
T ss_pred CceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceeeeEeecc-cCCCeEEEEEcCCCCEEEEEe
Confidence 6 22233345577899999999 6888999999999999999998873 4445441 337899999999999999999
Q ss_pred cccCCCCcceeeccceeEEEEECCCCc----------------eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWK----------------AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 319 (458)
.+ |.|++||+...+ ......+ .|...|.+++|+|++++|++++.||.|++
T Consensus 166 ~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 166 AD-------------RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp SS-------------SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred CC-------------CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 88 599999986322 1112223 77888999999999999999999999999
Q ss_pred EeCCCCce----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccC-------CCCCCC
Q 012699 320 FDMSAGLQ----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCD-------PESSKS 387 (458)
Q Consensus 320 ~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~-------~~~~~~ 387 (458)
||+++++. +..+.+|..+|.+++|+|++++|++++.++.+ +|+....... ........... ......
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99999887 88899999999999999999999998877666 6766533211 10000000000 000001
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC----eEEEecCCCcEEEEeC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP----MFLTGSADHSVQVMSL 457 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~l~s~~~dg~v~iw~l 457 (458)
....+.|++....+......+... ........|...|+++++.+... .|+|||.||.|+|||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C--------------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhccccc-------cccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 133344444333222211111111 11223336999999999776543 5999999999999996
No 61
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.3e-40 Score=289.58 Aligned_cols=258 Identities=14% Similarity=0.241 Sum_probs=209.9
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAW 219 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~w 219 (458)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+...........|..+|.+++|+|+ ++++|++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45779999999999999999999999999999999975433223344567889999999854 47899999999999999
Q ss_pred EcCCCce--eeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 220 NVDAKRV--VCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 220 d~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
|+++++. ...+.. +...|.+++|+|+ +..+++++.| |.|++||+++........+..|...
T Consensus 83 d~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d-------------~~v~~wd~~~~~~~~~~~~~~h~~~ 147 (297)
T 2pm7_B 83 KEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHAIG 147 (297)
T ss_dssp EBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred EcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECC-------------CcEEEEEecCCCceeeeeeecccCc
Confidence 9998753 333333 3468999999998 7899999988 5999999987643322334578889
Q ss_pred EEEEEEccC-------------CCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCC---CEEEEecC
Q 012699 296 ITSLCFNHN-------------GKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDE---TSIFSLGS 355 (458)
Q Consensus 296 i~~~~~~~~-------------~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~ 355 (458)
|.+++|+|+ +++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 999999997 5799999999999999998765 567788999999999999984 79999999
Q ss_pred CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
|++|++||+++....... .......+...+.+++|+|+|++|++++.|+.|++|+...
T Consensus 228 D~~v~iWd~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKK----TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCEEEEEESSTTSCCEE----EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEeCCCCCccce----eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 999999999864321110 0111234567899999999999999999999999999864
No 62
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-39 Score=321.73 Aligned_cols=303 Identities=17% Similarity=0.276 Sum_probs=240.9
Q ss_pred ccccCCCcceeeeeeccCC-CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 18 SRLKNNSETIKYANIGQTK-NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~-~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
..|++|...|++++| +++ +.+|+||+.|+++++|+.......
T Consensus 376 ~~l~~H~~~V~~v~~-~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------------------------------ 418 (694)
T 3dm0_A 376 GTMRAHTDMVTAIAT-PIDNADIIVSASRDKSIILWKLTKDDKA------------------------------------ 418 (694)
T ss_dssp EEEECCSSCEEEEEC-CTTCCSEEEEEETTSEEEEEECCCSTTC------------------------------------
T ss_pred hhcccCCceeEEEEe-cCCCCCEEEEEeCCCcEEEEEccCCCcc------------------------------------
Confidence 468899999999999 765 579999999999999987543100
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
. ....+.+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 419 -------------------------~--------------~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 419 -------------------------Y--------------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp -------------------------S--------------CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred -------------------------c--------------ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 0 0034467799999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeecc-CCCCCCceeeeeecCCC--CeEEE
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLN-TTDAFPSVLDLKCSPVE--PIFVS 253 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~--~~~~~ 253 (458)
.++.... ....|...|.+++|+ +++.+|++++.|++|++||........... ...|...|.+++|+|++ ..+++
T Consensus 460 ~~~~~~~--~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 460 AAGVSTR--RFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp TTTEEEE--EEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred CCCccee--EEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 8876543 345678899999999 678899999999999999987654433222 23344679999999987 57888
Q ss_pred eecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 254 AAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 254 ~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
++.| |.|++||+++++....+ .+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus 537 ~s~d-------------~~v~vwd~~~~~~~~~~--~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 537 ASWD-------------KTVKVWNLSNCKLRSTL--AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp EETT-------------SCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred EeCC-------------CeEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 8888 59999999998877766 47888999999999999999999999999999999998887764
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc----------cCCCCCCCceeEEEEccCCCEEEE
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF----------CDPESSKSCRHEMALDVNGRRLLV 403 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~g~~l~~ 403 (458)
...|.+++|+|++.+|++++ |+.|++||+++............. .....+...+.+++|+|+|++|++
T Consensus 602 -~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 602 -NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp -SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred -CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 56799999999998777665 567999999976544332111000 000112224788999999999999
Q ss_pred EeCCccEEEEEcc
Q 012699 404 TSGSVRAPIYQVR 416 (458)
Q Consensus 404 ~~~~~~i~i~~~~ 416 (458)
|+.||.|++|++.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999999985
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.4e-39 Score=288.13 Aligned_cols=291 Identities=15% Similarity=0.241 Sum_probs=244.4
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
...+|...|++++| ++++++|++++ |+.+++|+...+.....+
T Consensus 46 ~~~~h~~~v~~~~~-~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~----------------------------------- 88 (337)
T 1gxr_A 46 NTLNHGEVVCAVTI-SNPTRHVYTGG-KGCVKVWDISHPGNKSPV----------------------------------- 88 (337)
T ss_dssp EEECCSSCCCEEEE-CSSSSEEEEEC-BSEEEEEETTSTTCCSCS-----------------------------------
T ss_pred eeccCCCceEEEEE-ecCCcEEEEcC-CCeEEEEECCCCCceeee-----------------------------------
Confidence 34578888999999 88999988888 888888887654210000
Q ss_pred ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699 99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 178 (458)
......+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 89 ----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~ 128 (337)
T 1gxr_A 89 ----------------------------------------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp ----------------------------------------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred ----------------------------------------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 1111236889999999999999999999999999999988
Q ss_pred CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeeccc
Q 012699 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASR 258 (458)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 258 (458)
++.........+...+.+++|+ ++++++++++.||.|++||+++++....+..+. ..+.+++|+|++..+++++.+
T Consensus 129 ~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d- 204 (337)
T 1gxr_A 129 PTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLD- 204 (337)
T ss_dssp C--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT-
T ss_pred CCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecC-
Confidence 7644333445567889999999 688899999999999999999999888877654 689999999999999999988
Q ss_pred CCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCe
Q 012699 259 RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAI 338 (458)
Q Consensus 259 ~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 338 (458)
|.|++||+++++....+. +...+.+++|+|++++|++++.++.|++||+++++. ..+..|...|
T Consensus 205 ------------g~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v 268 (337)
T 1gxr_A 205 ------------NTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCV 268 (337)
T ss_dssp ------------SEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCE
T ss_pred ------------CcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccce
Confidence 599999999998887775 456799999999999999999999999999998765 4678899999
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 339 SSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 339 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
.+++|+|++++|++++.||.|++||+.+.+..... .+...+.+++|+|++++|++++.||.|++|++.
T Consensus 269 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----------KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE----------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred eEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe----------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999999999999999999987654321 255679999999999999999999999999973
No 64
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-39 Score=293.64 Aligned_cols=293 Identities=11% Similarity=0.144 Sum_probs=250.1
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
..+|.+|...|++++| ++++++|++|+.|+.+++|+...+.
T Consensus 25 ~~~l~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~vwd~~~~~-------------------------------------- 65 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLNGE-------------------------------------- 65 (369)
T ss_dssp EEEEECCSSCEEEEEE-CTTSCEEEEEESSSCEEEEETTTCC--------------------------------------
T ss_pred cEEEEEeeceEEEEEE-cCCCCEEEEEeCCCEEEEEeCCCch--------------------------------------
Confidence 4678999999999999 9999999999999999999865441
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEec
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~ 176 (458)
.+..+.+|.+.|.+++|+|++++|++++.||+|++||+
T Consensus 66 ------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 66 ------------------------------------------RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ------------------------------------------hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 33456689999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCce-----------eeeccCCCCCCcee
Q 012699 177 DSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKRV-----------VCDLNTTDAFPSVL 240 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~-----------~~~~~~~~~~~~v~ 240 (458)
.+++... ...+...+.+++|+ +++.++++++.+ |.|++||+..+.. ...+..+.....+.
T Consensus 104 ~~~~~~~---~~~~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 104 SNGQCVA---TWKSPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp TTCCEEE---EEECSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred CCCcEEE---EeecCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 9887653 33477899999999 678899999998 9999999987642 22222333223799
Q ss_pred eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEE
Q 012699 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHM 319 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v 319 (458)
+++|+|+++.+++++.+ |.|++||+++ .+....+. .|...|.+++|+|++++|++++.||.|++
T Consensus 180 ~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKD-------------GKISKYDVSNNYEYVDSID--LHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp EEEECGGGCEEEEEETT-------------SEEEEEETTTTTEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEEcCCCCEEEEEcCC-------------CEEEEEECCCCcEeEEEEe--cCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 99999999999999888 5999999998 56666664 56778999999999999999999999999
Q ss_pred EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--------------eEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--------------KIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||+.+....... ..+
T Consensus 245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------~~~ 314 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV---------QGH 314 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE---------ECC
T ss_pred EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe---------ecc
Confidence 9999999888887 788999999999999999999988 8999999877554432 246
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
...|.+++|+|++++|++++.||.|++|+++...
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 7789999999999999999999999999998654
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-41 Score=310.25 Aligned_cols=288 Identities=13% Similarity=0.268 Sum_probs=245.2
Q ss_pred CCCeEEEEeCCCCC-EEEEE----------eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 147 TSPISCCRFSSSGN-NIASA----------SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 147 ~~~v~~~~~~~~~~-~l~s~----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
...|.+++|+|+++ +|+++ +.|+.|++||+.++..........+...|.+++|+ +++.+|++++.||.
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HNNKIIAGALDNGS 90 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC-SSSSCEEEEESSSC
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEEC-CCCCeEEEEccCCe
Confidence 35688999999987 89999 88999999999877543233345577899999999 68889999999999
Q ss_pred EEEEEcCC----CceeeeccCCCCCCceeeeeecCC-CCeEEEeecccCCCCcceeeccceeEEEEECCCCc------ee
Q 012699 216 IKAWNVDA----KRVVCDLNTTDAFPSVLDLKCSPV-EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK------AM 284 (458)
Q Consensus 216 i~~wd~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~------~~ 284 (458)
|++||+.+ .+....+..+. ..|.+++|+|+ +.++++++.+ |.|++||+.+++ ..
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d-------------g~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHS--SSVKTVKFNAKQDNVLASGGNN-------------GEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSS--SCCCEEEECSSSTTBEEEECSS-------------SCEEBCBTTTTSSCTTTCCC
T ss_pred EEEeecccccccccchhhccCCc--cceEEEEEcCCCCCEEEEEcCC-------------CeEEEEECCCCccccccccc
Confidence 99999987 34666665554 78999999998 8899999887 599999999876 22
Q ss_pred EEe-ecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCC------CCCeEEEEEcCCC-CEEEEecC
Q 012699 285 TVL-PLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAH------DSAISSILFGPDE-TSIFSLGS 355 (458)
Q Consensus 285 ~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~ 355 (458)
..+ ....|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 222 23467788999999998 789999999999999999999998888876 7899999999997 68999999
Q ss_pred CC---eEEEEeccCCCeeEEeecCCcccCCC-CCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699 356 DG---KIIEWSLQNQGQVLWTRNCSRFCDPE-SSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430 (458)
Q Consensus 356 dg---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~ 430 (458)
|+ .|++||+++.... ..... .+...+.+++|+| ++++|++++.|+.|++||+.+.+.+..+.+|...
T Consensus 236 d~~~~~i~~~d~~~~~~~--------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~ 307 (416)
T 2pm9_A 236 SDNDPSILIWDLRNANTP--------LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW 307 (416)
T ss_dssp CSSSCCCCEEETTSTTSC--------SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC
T ss_pred CCCCceEEEEeCCCCCCC--------cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc
Confidence 98 9999999975322 12223 5778899999999 9999999999999999999998887788899999
Q ss_pred EEEEEECCCC-CeEEEecCCCcEEEEeCC
Q 012699 431 ITTVDWHPTL-PMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 431 v~~~~~~~~~-~~l~s~~~dg~v~iw~l~ 458 (458)
|++++|+|++ .+|++++.||.|++|++.
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 9999999999 799999999999999974
No 66
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.4e-40 Score=296.05 Aligned_cols=289 Identities=13% Similarity=0.138 Sum_probs=221.5
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCC-------cEEEEecCCCCCCCcc--------ccccCCCceEEEEEecCCCeEEEEE-
Q 012699 147 TSPISCCRFSSSGNNIASASVDG-------TVRIWTYDSSTPASRN--------ATIYCGTEIMSLEWECKSDRLLLIG- 210 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg-------~v~iwd~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~l~~~- 210 (458)
.-||++++|+||+++|++|+.|. .|++|++......... ....+...+.+++++ +..+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence 35899999999999999997543 5999999766543111 122344567788765 4455555
Q ss_pred ----------cCCCcEEEEEcCCCceee-------eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 211 ----------TADGGIKAWNVDAKRVVC-------DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 211 ----------~~dg~i~~wd~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
+.|+.+++|++....... ..........+..++|+|+|+++++++.+. ++.|
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~-----------d~~i 159 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV-----------PAIM 159 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS-----------SCEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC-----------CCEE
Confidence 457789999987653211 111222334588999999999987655321 1599
Q ss_pred EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEE
Q 012699 274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
++||+++++....+. |...|.+++|+|+|++|++++.+ .+.+|+..+++.+. ....|...|.+++|+|++++++
T Consensus 160 ~iwd~~~~~~~~~~~---~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE---TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp EEEETTTTEEEEEEE---CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred EEeECCCCcEEEEeC---CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 999999999888774 45679999999999999998855 56777777766553 3457888999999999999999
Q ss_pred EecCCC----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CC
Q 012699 352 SLGSDG----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LP 426 (458)
Q Consensus 352 ~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~ 426 (458)
+++.|+ .+++|++......... ......+...|.+++|+|||++||+|+.|+.|+|||+.+.+.+..+ .+
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLR-----SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEE-----EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred EEecCCcceeEEeecccccceeccee-----eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 999887 6888998765432211 1112346678999999999999999999999999999998777664 58
Q ss_pred CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 427 HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 427 h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|...|++++|+|||++|||||.|++||||+|+
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 99999999999999999999999999999984
No 67
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-39 Score=285.08 Aligned_cols=282 Identities=18% Similarity=0.208 Sum_probs=238.6
Q ss_pred eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 138 DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 138 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
+..+.+.+|.+.|++++| |++++|++++.||.|++||+.++.... ....+...|.+++|+ +++.++++++.||.++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~--~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT--VVYTGQGFLNSVCYD-SEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE--EEEECSSCEEEEEEE-TTTTEEEEEETTSCEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE--EeecCCccEEEEEEC-CCCCEEEEecCCCeEE
Confidence 477889999999999999 999999999999999999997765432 344567899999999 6889999999999999
Q ss_pred EEEcCCC---ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 218 AWNVDAK---RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 218 ~wd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
+|++... +....+..+ ...+.++.+ ++..+++++.+ |.|++|| .++....+. .|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~~~~l~~~~~d-------------~~i~~~d--~~~~~~~~~--~~~~ 143 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGH--QGNVCSLSF--QDGVVISGSWD-------------KTAKVWK--EGSLVYNLQ--AHNA 143 (313)
T ss_dssp EEETTCCTTSCC-CEECCC--SSCEEEEEE--ETTEEEEEETT-------------SEEEEEE--TTEEEEEEE--CCSS
T ss_pred EEEeeecCCCCcccchhhc--ccCEEEEEe--cCCEEEEEeCC-------------CCEEEEc--CCcEEEecc--cCCC
Confidence 9998764 334444433 378999998 57788888888 5999999 445555554 5778
Q ss_pred cEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 295 AITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 295 ~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
.+.+++|+| +++++++++.||.|++|| ..+....+.. |...+.+++|+|++. +++++.||.|++||+++.+....
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhh
Confidence 899999998 899999999999999999 4556666776 899999999999997 99999999999999998655433
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcE
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSV 452 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v 452 (458)
. ..+...+.+++|+|++ .|++++.|+.|++||+.+.+....+..|...|++++|+|+++ +++++.||.|
T Consensus 221 ~---------~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 221 Y---------EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp E---------ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCE
T ss_pred h---------hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcE
Confidence 2 2466789999999999 588999999999999999887777788999999999999998 6679999999
Q ss_pred EEEeCC
Q 012699 453 QVMSLS 458 (458)
Q Consensus 453 ~iw~l~ 458 (458)
++|+++
T Consensus 290 ~iw~~~ 295 (313)
T 3odt_A 290 RIFSQE 295 (313)
T ss_dssp EEEESC
T ss_pred EEEeCC
Confidence 999974
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.7e-39 Score=294.32 Aligned_cols=305 Identities=12% Similarity=0.146 Sum_probs=247.1
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccc
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPS 98 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 98 (458)
.+..|..+|++++| ++++++|++|+.|+.+++|+...+.
T Consensus 3 ~~~~~~~~i~~~~~-s~~~~~l~~~~~d~~v~i~~~~~~~---------------------------------------- 41 (372)
T 1k8k_C 3 YHSFLVEPISCHAW-NKDRTQIAICPNNHEVHIYEKSGNK---------------------------------------- 41 (372)
T ss_dssp EEESCSSCCCEEEE-CTTSSEEEEECSSSEEEEEEEETTE----------------------------------------
T ss_pred eecccCCCeEEEEE-CCCCCEEEEEeCCCEEEEEeCCCCc----------------------------------------
Confidence 35569999999999 9999999999999999999865441
Q ss_pred ccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC
Q 012699 99 KLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS 178 (458)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 178 (458)
.+.+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 42 --------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 42 --------------------------------------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp --------------------------------------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred --------------------------------------EEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 003445678999999999999999999999999999999987
Q ss_pred CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce---eeeccCCCCCCceeeeeecCCCCeEEEee
Q 012699 179 STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV---VCDLNTTDAFPSVLDLKCSPVEPIFVSAA 255 (458)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 255 (458)
++.........+...|.+++|+ +++++|++++.||.|++||++.+.. ...+. ..+...+.+++|+|++..+++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEEc
Confidence 7644333345577889999999 6788999999999999999998763 22222 22347899999999999999999
Q ss_pred cccCCCCcceeeccceeEEEEECC------------------CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeE
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMK------------------TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMI 317 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 317 (458)
.+ |.|++||++ .++....+ ..|...+.+++|+|++++|++++.||.|
T Consensus 162 ~d-------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i 226 (372)
T 1k8k_C 162 CD-------------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDSTV 226 (372)
T ss_dssp TT-------------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred CC-------------CCEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCEEEEEeCCCEE
Confidence 88 599999964 45555554 4677889999999999999999999999
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC--CCeeEE-ee--------------------
Q 012699 318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN--QGQVLW-TR-------------------- 374 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~-~~-------------------- 374 (458)
++||+++++++..+..|..+|.+++|+|++++|+++ .|+.|++|++.+ +.-... ..
T Consensus 227 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (372)
T 1k8k_C 227 CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 305 (372)
T ss_dssp EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHC
T ss_pred EEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhc
Confidence 999999999999999999999999999999888877 899999999987 310000 00
Q ss_pred --cCCc-------ccCCCCCCCceeEEEEc-cCC---CEEEEEeCCccEEEEEccCCCc
Q 012699 375 --NCSR-------FCDPESSKSCRHEMALD-VNG---RRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 375 --~~~~-------~~~~~~~~~~v~~~~~s-~~g---~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
.... ......|...|.+++|. ++| ++|++++.||.|++|++.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0000 11123788899999966 676 9999999999999999977543
No 69
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=291.31 Aligned_cols=208 Identities=16% Similarity=0.234 Sum_probs=176.9
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... ....|...|.+++|+|.+..+|++++.|++|++||+
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~--~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS--SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEE--EEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence 456899999999999999999999999999999999876643 344578899999999666678999999999999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
++++....+....+...+.+++|+|++ .++++++.| |.|++||+++++++..+. +|...|++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-------------g~v~~wd~~~~~~~~~~~--~h~~~v~~v~ 264 (344)
T 4gqb_B 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-------------GTVSLVDTKSTSCVLSSA--VHSQCVTGLV 264 (344)
T ss_dssp TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT-------------SEEEEEESCC--CCEEEE--CCSSCEEEEE
T ss_pred cccceeeeeecceeeccceeeeecCCCCcceEEeccC-------------CcEEEEECCCCcEEEEEc--CCCCCEEEEE
Confidence 999998888766655678999999965 567778777 599999999999888775 6778899999
Q ss_pred EccCC-CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCC
Q 012699 301 FNHNG-KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 301 ~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 367 (458)
|+|++ ++|++|+.|++|++||+++++.+ .+.+|.+.|++++|+|+++ +|++++.|++|++|++.+.
T Consensus 265 fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 265 FSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 99997 57999999999999999988754 5789999999999999886 5779999999999999864
No 70
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-39 Score=297.03 Aligned_cols=293 Identities=12% Similarity=0.134 Sum_probs=234.2
Q ss_pred hhccccCCCcceeeeeeccCCC-ceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETIKYANIGQTKN-STLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~-~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
..+.+.+|...|++++| ++++ ++|++|+.|+++++|+...+...
T Consensus 65 ~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------------- 109 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEW-HPTHPTTVAVGSKGGDIILWDYDVQNKT---------------------------------- 109 (383)
T ss_dssp EEEEECCCSSCEEEEEE-CSSCTTEEEEEEBTSCEEEEETTSTTCE----------------------------------
T ss_pred eEEeccCCCCCEEEEEE-CCCCCCEEEEEcCCCeEEEEeCCCcccc----------------------------------
Confidence 35688899999999999 9999 99999999999999997654110
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI 173 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 173 (458)
....+.+|.+.|.+++|+| ++++|++++.|++|++
T Consensus 110 --------------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 110 --------------------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp --------------------------------------------EEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred --------------------------------------------eeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 1112247999999999999 7899999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEE
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFV 252 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 252 (458)
||+.+...........+...|.+++|+ +++.+|++++.|+.|++||+ +++.+..+..+. ..|.+++|+|+++ .++
T Consensus 146 wd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 146 RDFSGSVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK--AKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EETTSCEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--SCEEEEEECSSCTTEEE
T ss_pred EECCCCceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--CcEEEEEECCCCCCEEE
Confidence 999864322111112234679999999 67889999999999999999 466666666554 7899999999999 888
Q ss_pred EeecccCCCCcceeeccceeEEEEECCC----CceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCce
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQ 327 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~ 327 (458)
+++.+ +.|++||+++ +.....+ .|...|.+++|+| ++++|++++.|+.|++||+++++.
T Consensus 222 s~~~d-------------~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 222 TSSVD-------------ATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEETT-------------SEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEeCC-------------CEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 88888 5999999997 4455544 4678899999999 999999999999999999999887
Q ss_pred eeeeeCCC-----------------CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCcee
Q 012699 328 ITGWPAHD-----------------SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRH 390 (458)
Q Consensus 328 ~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 390 (458)
...+..|. ..+..++|+|++++ +++.|+.|++||+.+++...... ...+...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~-------~~~~~~~~~ 356 (383)
T 3ei3_B 286 PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR-------DPNAAGIIS 356 (383)
T ss_dssp CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC-------BTTBCSCCC
T ss_pred ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec-------CCCCCceEE
Confidence 77766543 34455777777766 78899999999999876543321 112455677
Q ss_pred EEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 391 EMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 391 ~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
.++|+|++++|++++ |+.|++|++++
T Consensus 357 ~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 357 LNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEecCccEEEEec-CCcEEEEecCC
Confidence 789999999999997 89999999864
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.8e-39 Score=294.20 Aligned_cols=303 Identities=15% Similarity=0.106 Sum_probs=225.4
Q ss_pred cceeeeeeccCCCceeeeeecCc-------ceEEecccccccc--ccce-------------eeeeccCCceeeeeCCcc
Q 012699 25 ETIKYANIGQTKNSTLASGVNEE-------SLLLSTNSSEACA--TTAT-------------HMGSAEMGQTWASSRPAL 82 (458)
Q Consensus 25 ~~i~~~~~~s~~~~~l~s~~~d~-------~~~iw~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~ 82 (458)
-+|.|++| +|||++||+|+.|. .+++|+....... ..+. .+...+++..++......
T Consensus 15 ~PV~sv~f-s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 15 YPAYGAKF-LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SCEEEEEE-EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCEEEEEE-eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 47999999 99999999997644 5999998765432 1110 122233444444555555
Q ss_pred ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE
Q 012699 83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI 162 (458)
Q Consensus 83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 162 (458)
...+++++.|+.+++|++..... ....... ........+...+.+++|+|||++|
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~----~~~~~~~---------------------~~~~~~~~~~~~~~~v~fSpDg~~l 148 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVND----QLEFLTS---------------------VDFDASTNADDYTKLVYISREGTVA 148 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTT----EEEEEEE---------------------ECSSCCCCTTCCEEEEEECTTSSCE
T ss_pred ccEEEEecCCCcEEEEEecCCCc----eEEEeee---------------------eceeecCCcccCEEEEEEcCCCCEE
Confidence 66667777778888887654221 0000000 0011123456679999999999998
Q ss_pred EEE--eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699 163 ASA--SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL 240 (458)
Q Consensus 163 ~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~ 240 (458)
+++ +.|++|+|||+.+++... ...+..+|.+++|+ ++++++++++. +.+.+|+..+++.........+...+.
T Consensus 149 a~as~~~d~~i~iwd~~~~~~~~---~~~~~~~V~~v~fs-pdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~ 223 (365)
T 4h5i_A 149 AIASSKVPAIMRIIDPSDLTEKF---EIETRGEVKDLHFS-TDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLS 223 (365)
T ss_dssp EEEESCSSCEEEEEETTTTEEEE---EEECSSCCCEEEEC-TTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred EEEECCCCCEEEEeECCCCcEEE---EeCCCCceEEEEEc-cCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEE
Confidence 654 478999999999877653 34577889999999 78889998885 467777777777665544444557899
Q ss_pred eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEE
Q 012699 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIH 318 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 318 (458)
+++|+|++..+++++.+.... ..+++|++...... ....+..|...|++++|+|+|++||+|+.|+.|+
T Consensus 224 ~v~fspdg~~l~~~s~d~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 224 KINFIADDTVLIAASLKKGKG---------IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA 294 (365)
T ss_dssp EEEEEETTEEEEEEEESSSCC---------EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEEecCCcce---------eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence 999999999999998764211 26888998765542 2334457788899999999999999999999999
Q ss_pred EEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 319 MFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 319 v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
|||+++++++..+ .+|..+|++++|+|||++|+++|.|++|+|||+...
T Consensus 295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999998875 789999999999999999999999999999999753
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-38 Score=293.47 Aligned_cols=284 Identities=14% Similarity=0.254 Sum_probs=235.6
Q ss_pred eeccCCCCe--EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 142 TFLGHTSPI--SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 142 ~~~~h~~~v--~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
...+|...+ .+++|++ ..+++++.|+.|++||+.+++.... ....+...|.+++|+ +++.+|++++.||.|++|
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~-~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSAL-AETDESTYVASVKWS-HDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEE-EECCTTCCEEEEEEC-TTSSEEEEEETTSCEEEE
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEe-eecCCCCCEEEEEEC-CCCCEEEEECCCCeEEEE
Confidence 344676664 4566664 5688889999999999998876532 223367889999999 688899999999999999
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEE
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~ 298 (458)
|+.+++.+..+..+. ..+.+++| ++..+++++.+ |.|++||++. ......+ ..|...|.+
T Consensus 162 d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~--~~~~~~v~~ 222 (401)
T 4aez_A 162 DVESQTKLRTMAGHQ--ARVGCLSW--NRHVLSSGSRS-------------GAIHHHDVRIANHQIGTL--QGHSSEVCG 222 (401)
T ss_dssp ETTTCCEEEEECCCS--SCEEEEEE--ETTEEEEEETT-------------SEEEEEETTSSSCEEEEE--ECCSSCEEE
T ss_pred ECcCCeEEEEecCCC--CceEEEEE--CCCEEEEEcCC-------------CCEEEEecccCcceeeEE--cCCCCCeeE
Confidence 999999888887554 78999999 45788888888 5999999994 4444444 367789999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCC-EEEEec--CCCeEEEEeccCCCeeEEeec
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDET-SIFSLG--SDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~ 375 (458)
++|+|++++|++|+.||.|++||+++++++..+..|...|.+++|+|++. ++++++ .|+.|++||+.+.......
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~-- 300 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV-- 300 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--
Confidence 99999999999999999999999999999999999999999999999765 556654 7999999999987554432
Q ss_pred CCcccCCCCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcc--cccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASG--MRTLPHGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
.+...+.+++|+|++++|++++ .++.|++|++.+.... ..+.+|...|.+++|+|++++|++++.||.
T Consensus 301 --------~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~ 372 (401)
T 4aez_A 301 --------DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372 (401)
T ss_dssp --------ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred --------eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 1345699999999999999954 7999999999885433 334589999999999999999999999999
Q ss_pred EEEEeCC
Q 012699 452 VQVMSLS 458 (458)
Q Consensus 452 v~iw~l~ 458 (458)
|++|++.
T Consensus 373 i~iw~~~ 379 (401)
T 4aez_A 373 LKFWRVY 379 (401)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999974
No 73
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-38 Score=295.55 Aligned_cols=284 Identities=12% Similarity=0.190 Sum_probs=240.1
Q ss_pred ccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEec----CCCCC------CCcccc--c------cCCCceEEEEEecCCC
Q 012699 144 LGHTSPISCCRFSSSGN-NIASASVDGTVRIWTY----DSSTP------ASRNAT--I------YCGTEIMSLEWECKSD 204 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~----~~~~~------~~~~~~--~------~~~~~v~~~~~~~~~~ 204 (458)
..|.++|++++|+|+++ +|++|+.||.|++|++ .+++. ...... . .+...|.+++|+ +++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWS-HDG 120 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEEC-TTS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEc-CCC
Confidence 45679999999999999 9999999999999999 77662 111111 0 135589999999 688
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
++|++++.||.|++|| .+++....+..+. ..+.+++|+|++..+++++.+ |.|++||+.+++..
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVE-------------NVTILWNVISGTVM 184 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETT-------------CCEEEEETTTTEEE
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecC-------------CeEEEEECCCCcEE
Confidence 9999999999999999 6677777776554 789999999999999999888 59999999999888
Q ss_pred EEeecCCCCCc---------------EEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCE
Q 012699 285 TVLPLGEDPPA---------------ITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETS 349 (458)
Q Consensus 285 ~~~~~~~~~~~---------------i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 349 (458)
..+... ... +.+++|+|++ .+++++.+|.|++||+++++.+..+..|...|.+++|+|++++
T Consensus 185 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 185 QHFELK--ETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL 261 (425)
T ss_dssp EEECCC-----------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred EEeecc--ccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence 877533 233 8899999985 6888999999999999999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699 350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA 429 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~ 429 (458)
|++++.|+.|++||+++....... ..+...+.+++|+|++ ++++++.++.|++||+.+......+..|..
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 331 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCF---------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV 331 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEE---------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC
T ss_pred EEEEcCCCEEEEEECCCCccceEe---------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc
Confidence 999999999999999875433221 2466789999999999 999999999999999998877777778999
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.|.+++|+|++++|++++.||.|++|++
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 9999999999999999999999999997
No 74
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.9e-39 Score=294.44 Aligned_cols=306 Identities=15% Similarity=0.162 Sum_probs=243.5
Q ss_pred hccccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccccc---ceeeeeccCCceeeeeCCcc----c---eeE
Q 012699 17 LSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATT---ATHMGSAEMGQTWASSRPAL----S---RFA 86 (458)
Q Consensus 17 ~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~---~~l 86 (458)
...|.+|...|++++| ++ .+|++|+.|+++++|+...+..... +..+ .........+.+.++ + .++
T Consensus 9 ~~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSA-CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEE-CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEe-cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCccccEE
Confidence 4578899999999999 77 8999999999999999998762111 1111 112233445666666 7 899
Q ss_pred eeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccC-----CCCeEEEEeC----C
Q 012699 87 TNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGH-----TSPISCCRFS----S 157 (458)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~ 157 (458)
++++.|+.+++|++...... .......+.+| ...|.+++|+ |
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDET-----------------------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EEEETTSCEEEEEEEECTTT-----------------------------CCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred EEEcCCCCEEEEEccCCccc-----------------------------ccccceeecccccccCCCcEEEEEEeeccCC
Confidence 99999999999998663310 00024566677 5999999999 9
Q ss_pred CCCE-EEEEeCCCcEEEEecCC------CCCCC-----cccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 158 SGNN-IASASVDGTVRIWTYDS------STPAS-----RNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 158 ~~~~-l~s~~~dg~v~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
++++ |++++.||.|++||+.+ .+... .... ..+...+.+++|+ +++ ++++++.||.|++||
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISE 213 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEE
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEE
Confidence 9999 99999999999999987 55443 1111 3367789999999 566 999999999999999
Q ss_pred cCCCceeeeccC---C-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC-----
Q 012699 221 VDAKRVVCDLNT---T-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----- 291 (458)
Q Consensus 221 ~~~~~~~~~~~~---~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----- 291 (458)
+++++.+..+.. + .....+.+++|+|++..+++++.+. ..|.|++||+++++....+....
T Consensus 214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~----------~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN----------SFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----------TEEEEEEEETTTCCEEEEECBC------
T ss_pred CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----------CCceEEEEECCCCcccceeccCcccccc
Confidence 999998888776 3 0036899999999999999998761 00399999999998888775311
Q ss_pred ------CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee------CC---------------CCCeEEEEEc
Q 012699 292 ------DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP------AH---------------DSAISSILFG 344 (458)
Q Consensus 292 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~------~~---------------~~~v~~~~~~ 344 (458)
|...|.+++|+|++++|++++.||.|++||+++++.+..+. .| ..+|.+++|+
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 67889999999999999999999999999999999999999 88 9999999999
Q ss_pred CCC----------CEEEEecCCCeEEEEeccCC
Q 012699 345 PDE----------TSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 345 ~~~----------~~l~~~~~dg~i~iwd~~~~ 367 (458)
|++ ++|++++.||.|++|++.++
T Consensus 364 ~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 364 KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 998 79999999999999999864
No 75
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.9e-38 Score=290.64 Aligned_cols=278 Identities=17% Similarity=0.263 Sum_probs=231.9
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
..+.|+|+++ +.||+|. |++|+|||..+++.........+...|.+++|+ +++++|++|+.||.|++||+++++.+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 4678999986 4777664 999999999998766443444566789999999 788999999999999999999999998
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
.+..+. ..+.++.+ ++..+++++.+ +.+++||......... .+..|...+..+.++|+++++
T Consensus 184 ~~~~h~--~~v~~~s~--~~~~l~sgs~d-------------~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l 245 (420)
T 4gga_A 184 NMTSHS--ARVGSLSW--NSYILSSGSRS-------------GHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHL 245 (420)
T ss_dssp EECCCS--SCEEEEEE--ETTEEEEEETT-------------SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEeCCC--CceEEEee--CCCEEEEEeCC-------------CceeEeeecccceeeE-EecccccceeeeeecCCCCee
Confidence 887665 56777665 56788988888 5999999987544322 234788889999999999999
Q ss_pred EEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCCCC-EEEE--ecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 309 AASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPDET-SIFS--LGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
++++.|+.+++|+..+++ .+.....|...|.+++|+|++. .+++ |+.|++|++||+.++.......
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~------- 318 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------- 318 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-------
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-------
Confidence 999999999999998764 3556778999999999999654 5544 4679999999999875544322
Q ss_pred CCCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....+..+.|+|+++.+++++ .|+.|+|||+.+.+.+..+.+|.+.|++++|+|+|++||||+.|++|+|||+
T Consensus 319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 334688999999999998876 6899999999999888888899999999999999999999999999999997
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-39 Score=300.28 Aligned_cols=297 Identities=14% Similarity=0.172 Sum_probs=225.3
Q ss_pred ccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccc
Q 012699 18 SRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSIS 96 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 96 (458)
+...+|...|+|++| +| ++.+||+|+.|++|+|||+..+...
T Consensus 113 ~~~~~~~~~V~~l~~-~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------ 155 (435)
T 4e54_B 113 QKAAPFDRRATSLAW-HPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------ 155 (435)
T ss_dssp CEEEECSSCEEEEEE-CSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred ccCCCCCCCEEEEEE-eCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence 345578889999999 87 5679999999999999987655100
Q ss_pred ccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEEEe
Q 012699 97 PSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRIWT 175 (458)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd 175 (458)
....+.+|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus 156 ------------------------------------------~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 156 ------------------------------------------TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp ------------------------------------------EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred ------------------------------------------eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 2223558999999999998 689999999999999999
Q ss_pred cCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCC-eEEEe
Q 012699 176 YDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSA 254 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 254 (458)
+++...............+.+++|+ +++.+|++|+.||.|++||++. +.+..+..+. ..|.+++|+|++. +++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~--~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK--KKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS--SCEEEEEECTTCSSEEEEE
T ss_pred ccCCceeEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc--ceEEeeeecCCCceEEEEe
Confidence 9765432211112233457889999 7889999999999999999875 4445555443 7899999999987 56677
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEe-ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL-PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 333 (458)
+.| +.|++||+++.+....+ ...+|...|++++|+|++++|++++.||.|++||+++++....+..
T Consensus 270 s~d-------------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~ 336 (435)
T 4e54_B 270 SVD-------------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP 336 (435)
T ss_dssp ETT-------------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC
T ss_pred cCc-------------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec
Confidence 777 59999999987655443 2346788999999999999999999999999999999888777766
Q ss_pred CCC------CeEEEEEcCCCCEEEEec------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE-EE
Q 012699 334 HDS------AISSILFGPDETSIFSLG------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM-AL 394 (458)
Q Consensus 334 ~~~------~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~ 394 (458)
|.. .+....|+|++..+++++ .++.|++||..++....... ..+...|.++ +|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~--------~~~~~~v~s~~~f 408 (435)
T 4e54_B 337 HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY--------DPESSGISSLNEF 408 (435)
T ss_dssp CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC--------CSSCCCCCCEEEE
T ss_pred ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe--------CCCCCcEEEEEEE
Confidence 543 233456777766666553 34579999999876544321 1355567776 69
Q ss_pred ccCCCEEEEEeCCccEEEEEccCCC
Q 012699 395 DVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 395 s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
+|+|++|++|+ |+.|+||+++.++
T Consensus 409 spdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 409 NPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCCEEEEEc-CCcEEEEECCcCe
Confidence 99999999876 7789999998764
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=288.35 Aligned_cols=305 Identities=15% Similarity=0.207 Sum_probs=238.3
Q ss_pred ccccCCCcceeeeeeccCCCc-eeeeeec---CcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCC
Q 012699 18 SRLKNNSETIKYANIGQTKNS-TLASGVN---EESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGND 93 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~-~l~s~~~---d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (458)
..+.+|...|.+++| +|++. ++++|+. |+.+++|+...+..
T Consensus 12 ~~~~~h~~~v~~~~~-~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~---------------------------------- 56 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKW-VPCSAKFVTMGNFARGTGVIQLYEIQHGDL---------------------------------- 56 (357)
T ss_dssp EEEEECSSCEEEEEE-CTTSSEEEEEEC--CCCEEEEEEEECSSSE----------------------------------
T ss_pred hhccCCCCceEEEEE-cCCCceEEEecCccCCCcEEEEEeCCCCcc----------------------------------
Confidence 456789999999999 99885 5556665 88999998765410
Q ss_pred cccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC---CCEEEEEeCCCc
Q 012699 94 SISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS---GNNIASASVDGT 170 (458)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~ 170 (458)
......+|..+|.+++|+|+ +++|++|+.||.
T Consensus 57 ---------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 57 ---------------------------------------------KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp ---------------------------------------------EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred ---------------------------------------------cceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 00111268899999999998 699999999999
Q ss_pred EEEEecCCCCCCCccccccCCCceEEEEEec-----CCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCC--CCceeee
Q 012699 171 VRIWTYDSSTPASRNATIYCGTEIMSLEWEC-----KSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDA--FPSVLDL 242 (458)
Q Consensus 171 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~--~~~v~~~ 242 (458)
|++||+.+++.. ......|...|.++.|.+ +++++|++++.||.|++||+.+++ ....+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMP-VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSC-SEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCcc-EEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 999999887622 223445778899997653 678899999999999999999886 5665554332 2368888
Q ss_pred e----ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc---CCCEEEEEecCC
Q 012699 243 K----CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH---NGKILAASAVDG 315 (458)
Q Consensus 243 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg 315 (458)
. |+|++..+++++.+ |.|++||+++++..... .+...+.+++|+| ++.+|++++.||
T Consensus 171 ~~~~~~~~~~~~l~~~~~d-------------~~i~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDN-------------GDIKLFDLRNMALRWET---NIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp EEECCCC-CCCEEEEEETT-------------SEEEEEETTTTEEEEEE---ECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred EEEeccCCCCCEEEEEccC-------------CeEEEEECccCceeeec---CCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 7 78999999999988 59999999998875544 4567899999999 999999999999
Q ss_pred eEEEEeCCCCceeeeee-----CCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecC----------Ccc
Q 012699 316 MIHMFDMSAGLQITGWP-----AHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNC----------SRF 379 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~ 379 (458)
.|++||+++++....+. +|...|.+++|+|+++ +|++++.||.|++||++........... ...
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~ 314 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL 314 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence 99999999877666555 8999999999999998 8999999999999999865433110000 011
Q ss_pred cCCCCCCCceeEEEEccCCCEEE-EEeCCccEEEEEccCCC
Q 012699 380 CDPESSKSCRHEMALDVNGRRLL-VTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~-~~~~~~~i~i~~~~~~~ 419 (458)
.....+...|.+++|+|++++|+ +++.|+.|++|++....
T Consensus 315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 12335778899999999999998 79999999999998653
No 78
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-39 Score=288.92 Aligned_cols=256 Identities=13% Similarity=0.182 Sum_probs=202.6
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd 220 (458)
.+.+|.++|++++|+|+|++|++|+.|++|++||+.++..........|..+|.+++|+|+ ++++|++++.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4679999999999999999999999999999999987643222234567889999999854 578999999999999999
Q ss_pred cCCCc--eeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee-EEeecCCCCCc
Q 012699 221 VDAKR--VVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM-TVLPLGEDPPA 295 (458)
Q Consensus 221 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-~~~~~~~~~~~ 295 (458)
+++++ ....+.. +...|.+++|+|+ +.++++++.| |.|++||++..... .......|...
T Consensus 88 ~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D-------------~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 88 EENGTWEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSD-------------GAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp CSSSCCCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSS-------------SCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred CCCCcceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCC-------------CCEEEEecCCCCCcceeeeeccccCC
Confidence 99874 3344443 4478999999998 7789999988 59999999876432 22334577788
Q ss_pred EEEEEEccC-----------------CCEEEEEecCCeEEEEeCCCC---ceeeeeeCCCCCeEEEEEcCCC----CEEE
Q 012699 296 ITSLCFNHN-----------------GKILAASAVDGMIHMFDMSAG---LQITGWPAHDSAISSILFGPDE----TSIF 351 (458)
Q Consensus 296 i~~~~~~~~-----------------~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~ 351 (458)
+.+++|+|+ +++|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++ ++|+
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 999999997 468999999999999999754 4677888999999999999986 7899
Q ss_pred EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
+++.|++|++|++.+...... .......+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTW-----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCC-----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEcCCCeEEEEEccCccccch-----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999999999999976321000 0000123567899999999999999999999999999853
No 79
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=304.84 Aligned_cols=337 Identities=9% Similarity=0.010 Sum_probs=237.3
Q ss_pred CCcceeeeeeccCCC---------ceeee-------------------eecCcceEEecccccccc-----------ccc
Q 012699 23 NSETIKYANIGQTKN---------STLAS-------------------GVNEESLLLSTNSSEACA-----------TTA 63 (458)
Q Consensus 23 h~~~i~~~~~~s~~~---------~~l~s-------------------~~~d~~~~iw~~~~~~~~-----------~~~ 63 (458)
+...|.+++| +|++ ++||+ ++.|++++||+...+... +.+
T Consensus 132 ~~~~V~sv~w-~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAW-LNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEV 210 (524)
T ss_dssp CCC--CCCSC-EEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSE
T ss_pred CCCceeEEEe-cccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcE
Confidence 5667888888 7776 66666 557889999998776531 233
Q ss_pred eeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee
Q 012699 64 THMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF 143 (458)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 143 (458)
..+.|+|++ ...+++.+|++++.|+++++|++.......... . ........+
T Consensus 211 ~~v~wsp~~-----~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~---~--------------------~~~~p~~~l 262 (524)
T 2j04_B 211 WDLKWHEGC-----HAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF---K--------------------MCEKPSLTL 262 (524)
T ss_dssp EEEEECSSC-----CCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE---E--------------------CCCSCSEEE
T ss_pred EEEEECCCC-----CCCCCCceEEEEecCCeEEEEEcCCCccccccc---e--------------------eecCceEEE
Confidence 455566652 122346899999999999999986532110000 0 000133467
Q ss_pred ccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEE--EecCCC-eEEEEEcCCCcEEEEE
Q 012699 144 LGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLE--WECKSD-RLLLIGTADGGIKAWN 220 (458)
Q Consensus 144 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~-~~l~~~~~dg~i~~wd 220 (458)
.+|...|++++|+|++ .|++|+.||+|++||+.++... ......|...|.+++ |+ +++ .+|++++.|++|++||
T Consensus 263 ~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s-~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 263 SLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYS-DFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp CCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECC-TTSCCEEEEEETTSEEEEEC
T ss_pred EcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcC-CCCCeEEEEeccCCeEEEEE
Confidence 8999999999999864 8999999999999999876432 222445778999994 45 665 8999999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
++++++...+..+.....+.+++|+|++..+++++.+ +.|++||++++.....+. +|...|++++
T Consensus 340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d-------------~tv~lwd~~~~~~~~~l~--gH~~~V~sva 404 (524)
T 2j04_B 340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA-------------SSLRAVPSRAAFAVHPLV--SRETTITAIG 404 (524)
T ss_dssp GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS-------------SEEEEEETTCTTCCEEEE--ECSSCEEEEE
T ss_pred CCCCCcccccccccccCcccceEeCCCcCeEEEeCCC-------------CcEEEEECcccccceeee--cCCCceEEEE
Confidence 9988776555544322357899999999999998887 499999999988777664 6888999999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-----CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeec
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-----HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 375 (458)
|+|++++|++|+.||+|++||+..+ .+..+.. +...+.+++|+|++..+. ...+ +.+|+....+.
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~------ 474 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDV------ 474 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC------------
T ss_pred eCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCc------
Confidence 9999999999999999999998653 3322211 112578999999998552 2222 23333221111
Q ss_pred CCcccCCCCCCCceeEEEEccCCC---EEEEEeCCccEEEEEccCC
Q 012699 376 CSRFCDPESSKSCRHEMALDVNGR---RLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 376 ~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~~~~i~i~~~~~~ 418 (458)
......++...|.+++|+|+++ .+|+|+.+|.|+||++...
T Consensus 475 --~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 475 --SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred --ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 1222346778899999999964 9999999999999998764
No 80
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=277.21 Aligned_cols=277 Identities=16% Similarity=0.255 Sum_probs=229.5
Q ss_pred eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 150 ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
.++|+||+++ +||+| .|++|+|||+.+++.........|...|.+++|+ +++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 5789999986 67665 5999999999998876544444567789999999 7889999999999999999999999988
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (458)
+..+. ..+.+ +++++..+++++.+ +.+++|+.......... +..|...+..+.+++++++|+
T Consensus 105 ~~~h~--~~~~~--~~~~~~~l~s~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 166 (318)
T 4ggc_A 105 MTSHS--ARVGS--LSWNSYILSSGSRS-------------GHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLA 166 (318)
T ss_dssp EECCS--SCEEE--EEEETTEEEEEETT-------------SEEEEEETTSSSCEEEE-EECCSSCEEEEEECTTSSEEE
T ss_pred ecCcc--ceEEE--eecCCCEEEEEecC-------------CceEeeecCCCceeEEE-EcCccCceEEEEEcCCCCEEE
Confidence 87665 44544 45567788888887 59999998875543322 346778899999999999999
Q ss_pred EEecCCeEEEEeCCCCce----eeeeeCCCCCeEEEEEcCCCCEE---EEecCCCeEEEEeccCCCeeEEeecCCcccCC
Q 012699 310 ASAVDGMIHMFDMSAGLQ----ITGWPAHDSAISSILFGPDETSI---FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP 382 (458)
Q Consensus 310 ~~~~dg~i~v~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 382 (458)
+++.||.|++||+++++. ......|.+.|.+++++|++..+ ++++.++.|++||..........
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--------- 237 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--------- 237 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---------
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---------
Confidence 999999999999987653 34556788899999999976533 46778999999999876554432
Q ss_pred CCCCCceeEEEEccCCCEEEEEe--CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTS--GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~--~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+...+..+.|+|+++.+++++ .|+.|++||+.+.+.+..+.+|.+.|++++|+|++++|||||.||+|+|||+
T Consensus 238 -~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 -DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp -ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 2445689999999999988765 6899999999999888888899999999999999999999999999999997
No 81
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-37 Score=274.11 Aligned_cols=290 Identities=18% Similarity=0.260 Sum_probs=239.7
Q ss_pred HhhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 15 AQLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 15 ~~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
+.++.|.+|...|++++| +++++|++|+.|+.+++|+...+.
T Consensus 9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~------------------------------------ 50 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQW------------------------------------ 50 (313)
T ss_dssp EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSE------------------------------------
T ss_pred HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCE------------------------------------
Confidence 356789999999999999 788899999999999999864431
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIW 174 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 174 (458)
....+..|.+.|.+++|+|++++|++++.||.|++|
T Consensus 51 --------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 51 --------------------------------------------LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp --------------------------------------------EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred --------------------------------------------EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 233455788999999999999999999999999999
Q ss_pred ecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEE
Q 012699 175 TYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFV 252 (458)
Q Consensus 175 d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~ 252 (458)
++....... ......+...|.+++|. +.++++++.||.|++|| .++....+..+. ..+.++.+.| ++..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~ 159 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSFSENKFL 159 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEETTTTEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccCCCCEEE
Confidence 987654322 22334567889999995 56899999999999999 566666666554 6899999988 888999
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 332 (458)
+++.+ |.|++||. .+....+. ..+...+.+++|+|++. +++++.||.|++||+++++.+..+.
T Consensus 160 ~~~~d-------------~~i~i~d~--~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 160 TASAD-------------KTIKLWQN--DKVIKTFS-GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEETT-------------SCEEEEET--TEEEEEEC-SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEECC-------------CCEEEEec--CceEEEEe-ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 99888 59999993 34555543 23778899999999998 9999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
.|...|.+++|+|++ .|++++.||.|++||+.+.+..... ..+...+.+++|+|+++ +++++.|+.|++
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i 291 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI---------TLPAISIWSVDCMSNGD-IIVGSSDNLVRI 291 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE---------ECSSSCEEEEEECTTSC-EEEEETTSCEEE
T ss_pred cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE---------eccCceEEEEEEccCCC-EEEEeCCCcEEE
Confidence 999999999999999 6889999999999999987544332 13456799999999998 567999999999
Q ss_pred EEccCCCcc
Q 012699 413 YQVRGHASG 421 (458)
Q Consensus 413 ~~~~~~~~~ 421 (458)
|++++....
T Consensus 292 w~~~~~~~~ 300 (313)
T 3odt_A 292 FSQEKSRWA 300 (313)
T ss_dssp EESCGGGCC
T ss_pred EeCCCCcee
Confidence 999876543
No 82
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=288.08 Aligned_cols=344 Identities=12% Similarity=0.122 Sum_probs=238.5
Q ss_pred hhccccCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCc
Q 012699 16 QLSRLKNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDS 94 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (458)
....+.+|...|++++| +| ++++|++|+.|+.+++|+...+.............
T Consensus 35 ~~~~~~~h~~~v~~~~~-s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~------------------------ 89 (408)
T 4a11_B 35 DRDVERIHGGGINTLDI-EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCS------------------------ 89 (408)
T ss_dssp TEEECCCCSSCEEEEEE-CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEE------------------------
T ss_pred ceeeeeccCCcEEEEEE-ecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccc------------------------
Confidence 34567889999999999 99 99999999999999999988763321111000000
Q ss_pred ccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCCCcEEE
Q 012699 95 ISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVDGTVRI 173 (458)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~i 173 (458)
.......+|...|.+++|+| ++++|++++.||.|++
T Consensus 90 -------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~i 126 (408)
T 4a11_B 90 -------------------------------------------IGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKV 126 (408)
T ss_dssp -------------------------------------------ECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEE
T ss_pred -------------------------------------------ccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEE
Confidence 00011246999999999999 7889999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe-
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI- 250 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 250 (458)
||+.+++... ...+...+.++.|.|. ++.++++++.||.|++||+++++....+..+. ..+.+++|+|++..
T Consensus 127 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 201 (408)
T 4a11_B 127 WDTNTLQTAD---VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR--QEILAVSWSPRYDYI 201 (408)
T ss_dssp EETTTTEEEE---EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC--SCEEEEEECSSCTTE
T ss_pred eeCCCCccce---eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC--CcEEEEEECCCCCcE
Confidence 9998876543 3446778899999854 44599999999999999999998888777655 68999999999994
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEee-------------cCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLP-------------LGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
+++++.+ |.|++||++++. ....+. ...|...|.+++|+|++++|++++.||.
T Consensus 202 l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 202 LATASAD-------------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEEETT-------------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEEcCC-------------CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 7788877 599999998765 222221 1357788999999999999999999999
Q ss_pred EEEEeCCCCceeeeeeCCC-----CCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 317 IHMFDMSAGLQITGWPAHD-----SAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
|++||+++++....+..+. ..+........+..+++++.|+.|++||+.+....... ..+...|.+
T Consensus 269 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---------~~~~~~v~~ 339 (408)
T 4a11_B 269 MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML---------KGHYKTVDC 339 (408)
T ss_dssp EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE---------CCCSSCEEE
T ss_pred EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee---------ccCCCeEEE
Confidence 9999999887655443221 12222222334556777888999999999986554322 256788999
Q ss_pred EEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC-CCeEEEecCCCcEEEEeC
Q 012699 392 MALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT-LPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iw~l 457 (458)
++|+|++++|++++.||.|++|++.+.+.+.....+. ....+.|. ...+.+++.|+.+++|+.
T Consensus 340 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 340 CVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSH 403 (408)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEECC-----------------------------------------
T ss_pred EEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE---eccccccccceeecccCccCceeecCC
Confidence 9999999999999999999999999886554333222 22333443 335667788999999985
No 83
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.1e-38 Score=282.00 Aligned_cols=289 Identities=9% Similarity=0.083 Sum_probs=236.1
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC-CccccccCCCceEEEEEecCCCe-EEEEEcCCCcEE
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA-SRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIK 217 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~ 217 (458)
.....+|.+.|++++|+|++++|++++.|+.|++|++.++... .......+...|.+++|+ +++. +|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI-DNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEE-ESSSEEEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEEC-CCCCcEEEEEcCCCeEE
Confidence 3445689999999999999999999999999999999877621 112334677899999999 5678 999999999999
Q ss_pred EEEc-CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---------CceeEEe
Q 012699 218 AWNV-DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---------WKAMTVL 287 (458)
Q Consensus 218 ~wd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---------~~~~~~~ 287 (458)
+||+ .+++. ..+....+...|.+++|+| +..+++++.+ |.|++||+++ +++...+
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWD-------------GLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETT-------------SEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCC-------------CeEEEEcccccccccccccCCeeeEE
Confidence 9999 87765 4444411447899999999 9999999988 5999999987 6655544
Q ss_pred ecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcC-CCCEEEEecCCCeEEEEe
Q 012699 288 PLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGP-DETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 363 (458)
. +...+.+++|+|++ +++++.|+.|++||+++ +.. ......|...+.+++|+| +++++++++.||.|++|+
T Consensus 148 ~---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~ 222 (342)
T 1yfq_A 148 K---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222 (342)
T ss_dssp S---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEE
T ss_pred e---eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEE
Confidence 3 66789999999987 99999999999999988 543 334557888999999999 999999999999999999
Q ss_pred ccCC------CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC-CCcEEEEEE
Q 012699 364 LQNQ------GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH-GAAITTVDW 436 (458)
Q Consensus 364 ~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~ 436 (458)
+... .................+...+.+++|+|++++|++++.||.|++||+.+.+.+..+.+| ...|++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~- 301 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA- 301 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-
Confidence 9876 222222111111112234558999999999999999999999999999998877777788 99999999
Q ss_pred CCCCCeEEEecCCCc
Q 012699 437 HPTLPMFLTGSADHS 451 (458)
Q Consensus 437 ~~~~~~l~s~~~dg~ 451 (458)
|++++|++++.||.
T Consensus 302 -~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 302 -CSDNILCLATSDDT 315 (342)
T ss_dssp -ECSSEEEEEEECTH
T ss_pred -CCCCeEEEEecCCc
Confidence 99999999999998
No 84
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=291.94 Aligned_cols=296 Identities=15% Similarity=0.248 Sum_probs=222.2
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCC---------CccccccCC------------CceEEEEEecCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPA---------SRNATIYCG------------TEIMSLEWECKS 203 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~---------~~~~~~~~~------------~~v~~~~~~~~~ 203 (458)
.|.+.|++++|+|++++||+|+.||.|+|||+.++... .......|. ..|.+++|+|..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 36789999999999999999999999999999876520 011223454 779999999543
Q ss_pred C-eEEEEEcCCCcEEEEEcCCCceeee--------------------------------------ccCCCCCCceeeeee
Q 012699 204 D-RLLLIGTADGGIKAWNVDAKRVVCD--------------------------------------LNTTDAFPSVLDLKC 244 (458)
Q Consensus 204 ~-~~l~~~~~dg~i~~wd~~~~~~~~~--------------------------------------~~~~~~~~~v~~~~~ 244 (458)
. .+|++++.|+.|++||+.++..... .....+...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 2 7899999999999999987543211 111234578999999
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEe-----ecCCCCCcEEEEEEccCC-CEEEEEecCCeE
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVL-----PLGEDPPAITSLCFNHNG-KILAASAVDGMI 317 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~-----~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i 317 (458)
+|++..++++ .| |.|++||+++ .+....+ .+..|...|.+++|+|++ ++|++|+.||.|
T Consensus 186 ~~~~~~l~s~-~d-------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 186 NSDYETYLSA-DD-------------LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CTTSSEEEEE-CS-------------SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred cCCCCEEEEe-CC-------------CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 9999999998 56 5999999994 3344433 345678899999999998 999999999999
Q ss_pred EEEeCCCCce----eeeeeCCCC------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 318 HMFDMSAGLQ----ITGWPAHDS------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 318 ~v~d~~~~~~----~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
++||+++++. +..+..|.. .|.+++|+|++++|++++. +.|++||+++..........+....
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9999999886 778888876 8999999999999999998 9999999986332221111111000
Q ss_pred C-------CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-------------------------------
Q 012699 382 P-------ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR------------------------------- 423 (458)
Q Consensus 382 ~-------~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~------------------------------- 423 (458)
. ......+..++|+|++++|++++.|+.|++||+.+++....
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISV 410 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEG
T ss_pred ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccc
Confidence 0 00000133499999999999999999999999987643210
Q ss_pred -cCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 424 -TLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 424 -~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+...|.+++|+|++++||+++.++ +++|.
T Consensus 411 ~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 411 DSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp GGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 113456789999999999999998875 77776
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-39 Score=292.98 Aligned_cols=317 Identities=9% Similarity=0.042 Sum_probs=238.5
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF 102 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 102 (458)
-...|.+++| +|||+++||++.|++++ +.+.+... . ........+.+++++ ..+.|+++.
T Consensus 14 ~~~~v~sv~~-SpDG~~iASas~D~TV~--d~~~~~~l---~----gh~~~v~~V~FsPdg----------~~~~~~~~~ 73 (588)
T 2j04_A 14 FEDWKNNLTW-ARDGTLYLTTFPDISIG--QPKYAKDI---N----CNSKNLFHVKEFPLE----------FENKLDFEL 73 (588)
T ss_dssp CSSSSCCEEE-CTTSCEEEECSSSEEEE--EECCCSCC---S----SBGGGTEEEEEECCC----------CCCTTTTSC
T ss_pred hhccEEEEEE-CCCCCEEEEEcCCceee--ccccccee---c----CCCccEEEEEECCCC----------CcceEEEEe
Confidence 3467999999 99999999999999999 54333222 0 112222233333333 444444433
Q ss_pred ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC
Q 012699 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP 181 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 181 (458)
.+. . ..+. +|...|.+++|||+|++||+++.||+|++||..+ .
T Consensus 74 ~~~------------------~----------------~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~ 117 (588)
T 2j04_A 74 AQQ------------------N----------------GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--M 117 (588)
T ss_dssp CCS------------------S----------------CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--E
T ss_pred CCC------------------c----------------eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--e
Confidence 220 0 0111 4678899999999999999999999999999544 2
Q ss_pred CCccccccCC-----CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce-------eeecc--CCCCCCceeeeeecCC
Q 012699 182 ASRNATIYCG-----TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV-------VCDLN--TTDAFPSVLDLKCSPV 247 (458)
Q Consensus 182 ~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~--~~~~~~~v~~~~~~~~ 247 (458)
. ....+. ..+.+++|+ +++++|++|+.||+|++||+.++.. +.++. ...|...|.+++|+|+
T Consensus 118 l---~~l~~~~~~~~~sv~svafS-PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 118 L---TNLDSKGNLSSRTYHCFEWN-PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp E---EECCCSSCSTTTCEEEEEEC-SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred e---eeccCCCccccccEEEEEEc-CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 1 111222 259999999 7899999999999999999998753 34442 1224478999999999
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCCCcee---EEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM---TVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA 324 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 324 (458)
+ +++++.| +.+++||+..++.. ..+. ..|...|.+++|+ ++.|++++ ++.|++||+.+
T Consensus 194 g--Laass~D-------------~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~ 254 (588)
T 2j04_A 194 V--LVAALSN-------------NSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN 254 (588)
T ss_dssp E--EEEEETT-------------CCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT
T ss_pred c--EEEEeCC-------------CeEEEEECCCCccccceeeec-ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC
Confidence 9 6777777 49999999887743 3332 3566789999999 68999887 69999999998
Q ss_pred CceeeeeeCCCCCeEEEEE--cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE
Q 012699 325 GLQITGWPAHDSAISSILF--GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL 402 (458)
Q Consensus 325 ~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 402 (458)
++......+|.+.+..++| +|++..|++++.||+ ++|.... ++++||+..++
T Consensus 255 ~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~-------------------------~~~spd~~l~a 308 (588)
T 2j04_A 255 YSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE-------------------------LHVTADNIIAP 308 (588)
T ss_dssp TEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS-------------------------EEEECCCSSHH
T ss_pred CeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc-------------------------EEECCCceEEE
Confidence 7764444489999999999 999999999999999 9999761 56999999887
Q ss_pred EEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 403 VTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 403 ~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
.. |+++++|+..+.. .. ...+...|.+++|+|||+.+|+++.
T Consensus 309 ~~--d~~v~lW~~~g~~-l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 309 YL--EKKFKKWSTIWNE-FN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HH--HHHHHHTTTTTTS-SS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred Ec--CCEEEEEECCCCc-ee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 75 9999999987664 22 3344778999999999999998863
No 86
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.8e-37 Score=271.30 Aligned_cols=249 Identities=12% Similarity=0.181 Sum_probs=205.1
Q ss_pred ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCc
Q 012699 188 IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSS 263 (458)
Q Consensus 188 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~ 263 (458)
..|...|.+++|+ +++++|++|+.|++|++||+..+ +.+..+..|. .+|.+++|+++ +..+++++.|
T Consensus 6 ~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s~D------ 76 (297)
T 2pm7_B 6 NAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHE--GPVWRVDWAHPKFGTILASCSYD------ 76 (297)
T ss_dssp CSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCS--SCEEEEEECCGGGCSEEEEEETT------
T ss_pred cCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcccc--CCeEEEEecCCCcCCEEEEEcCC------
Confidence 4577899999999 78899999999999999999754 5556666554 78999999864 7899999988
Q ss_pred ceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCc--eeeeeeCCCCCeE
Q 012699 264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGL--QITGWPAHDSAIS 339 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~ 339 (458)
|.|++||+++++......+..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...|.
T Consensus 77 -------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 77 -------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp -------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred -------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 5999999998754333334578889999999997 8899999999999999998753 2456789999999
Q ss_pred EEEEcCC-------------CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---CEEEE
Q 012699 340 SILFGPD-------------ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---RRLLV 403 (458)
Q Consensus 340 ~~~~~~~-------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~ 403 (458)
+++|+|+ +++|++++.|++|++||+++........ .....|...|.+++|+|++ ++|++
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~-----~~l~~H~~~V~~v~~sp~~~~~~~las 224 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYMAS 224 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEE-----EEecCCCCceEEEEECCCCCCceEEEE
Confidence 9999997 5799999999999999998754321110 1123578889999999985 89999
Q ss_pred EeCCccEEEEEccCCCc-----ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 404 TSGSVRAPIYQVRGHAS-----GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
++.|++|++|+++.... .....+|...|.+++|+|++++||+++.||.|+||++
T Consensus 225 ~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 225 VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence 99999999999987431 1112468899999999999999999999999999986
No 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.2e-38 Score=287.36 Aligned_cols=296 Identities=14% Similarity=0.189 Sum_probs=232.2
Q ss_pred cccCCCcceeeeeeccCC----CceeeeeecCcceEEeccccccccccceee-eeccCCceeeeeCCcc----ceeEeec
Q 012699 19 RLKNNSETIKYANIGQTK----NSTLASGVNEESLLLSTNSSEACATTATHM-GSAEMGQTWASSRPAL----SRFATNM 89 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~----~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~~~ 89 (458)
.+.+|...|++++| +|+ ...+++++.++.+++|+...+.....+... ..........+.++.+ +.+++++
T Consensus 13 ~~~~h~~~v~~i~~-~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQF-NWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEE-CTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEE-ecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 44589999999999 873 455666666779999999977655333321 1112233444555554 6799999
Q ss_pred cCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCCEEEEEeCC
Q 012699 90 SGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGNNIASASVD 168 (458)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 168 (458)
+.|+.+++|++.... .+..+.+|..+|.+++|+| ++++|++++.|
T Consensus 92 ~~dg~i~v~d~~~~~----------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 92 GSRGIIRIINPITMQ----------------------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp ETTCEEEEECTTTCC----------------------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETT
T ss_pred cCCCEEEEEEchhce----------------------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCC
Confidence 999999999976532 5566789999999999999 89999999999
Q ss_pred CcEEEEecCCCCCCCcccc-ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC---------------
Q 012699 169 GTVRIWTYDSSTPASRNAT-IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT--------------- 232 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------------- 232 (458)
|+|++||+.+++....... ..+...|.+++|+ +++.+|++++.||.|++||+++++....+..
T Consensus 138 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 138 HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp SCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred CeEEEEEeecCeEEEEecccccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 9999999988765432211 3577899999999 6888999999999999999998765543321
Q ss_pred -----------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce------------eEEeec
Q 012699 233 -----------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA------------MTVLPL 289 (458)
Q Consensus 233 -----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~------------~~~~~~ 289 (458)
..+...|.+++|+ +..+++++.+ |.|++||+.+++. .....+
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d-------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE-------------NAIVCWKPGKMEDDIDKIKPSESNVTILGRF 281 (366)
T ss_dssp EEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS-------------SEEEEEEESSTTCCGGGCCTTCCCEEEEEEE
T ss_pred eeeccCccccccCCcceEEEEEEc--CCEEEEEecC-------------CEEEEEeCCCccccccccccCCcchheeccc
Confidence 1134678999998 6788888887 5999999987654 222233
Q ss_pred CCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCcee----eeeeCC--CCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 290 GEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQI----TGWPAH--DSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
..|...|.+++|+|+ +++|++|+.||.|++||+.++++. ..+..| ...|.+++|+|++++|++++.||.|++
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 466778999999999 999999999999999999987643 367777 789999999999999999999999999
Q ss_pred Eecc
Q 012699 362 WSLQ 365 (458)
Q Consensus 362 wd~~ 365 (458)
||+.
T Consensus 362 wd~~ 365 (366)
T 3k26_A 362 WDRL 365 (366)
T ss_dssp EEC-
T ss_pred EEec
Confidence 9985
No 88
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-37 Score=282.05 Aligned_cols=294 Identities=17% Similarity=0.213 Sum_probs=218.3
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCC--ccccccCCCceEEEEEecC-CCeEEEEEcCCCcEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPAS--RNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIK 217 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 217 (458)
..+.+|.+.|++++|+|++++|++|+.||+|++||+.++.... ......|...|.+++|+|. ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4567999999999999999999999999999999998764321 1223457789999999954 589999999999999
Q ss_pred EEEcCCC---------ceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 218 AWNVDAK---------RVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 218 ~wd~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
+||++++ +....+..+. ..+.+++|+|+ +..+++++.+ |.|++||+++++....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-------------g~v~iwd~~~~~~~~~ 149 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSK--GSLYSVKFAPAHLGLKLACLGND-------------GILRLYDALEPSDLRS 149 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT-------------CEEEEEECSSTTCTTC
T ss_pred EEecCCCcccccccCcceeeeecccC--CceeEEEEcCCCCCcEEEEecCC-------------CcEEEecCCChHHhcc
Confidence 9999887 3455554443 78999999999 9999999988 5999999988775443
Q ss_pred ee-----------cCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCC---
Q 012699 287 LP-----------LGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDE--- 347 (458)
Q Consensus 287 ~~-----------~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~--- 347 (458)
+. ...+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|.+++|+|++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~ 229 (351)
T 3f3f_A 150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRW 229 (351)
T ss_dssp CEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCS
T ss_pred ccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCc
Confidence 32 1246678999999997 89999999999998888877665 67788999999999999998
Q ss_pred -CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe----CCccEEEEEccCCCccc
Q 012699 348 -TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS----GSVRAPIYQVRGHASGM 422 (458)
Q Consensus 348 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~----~~~~i~i~~~~~~~~~~ 422 (458)
++|++++.||.|++||++......... ...........++....++.+. ....+.+|+........
T Consensus 230 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 230 YQLIATGCKDGRIRIFKITEKLSPLASE---------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp SEEEEEEETTSCEEEEEEEECC------------------------------------------------CCSEEEEEEE
T ss_pred ceEEEEEcCCCeEEEEeCCCCcCccccC---------CcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 899999999999999998754322111 1112223333344444444333 23445566655555566
Q ss_pred ccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 423 RTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 423 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+.+|...|++++|+|++++|++++.||.|+||+++
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEecccccEEEEEEcCCCCEEEEecCCCcEEEEecC
Confidence 667899999999999999999999999999999974
No 89
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-36 Score=285.75 Aligned_cols=284 Identities=14% Similarity=0.251 Sum_probs=237.0
Q ss_pred eeeeeccCCCCe-EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 139 FLETFLGHTSPI-SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 139 ~~~~~~~h~~~v-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++... ....|...|.+++|+ +++ ++++|+.||+|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~--~~~~h~~~V~~l~~~-~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYA-HGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEC-STT-EEEEEETTSCEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE--EEeCCCcCEEEEEEc-CCC-EEEEEeCCCCEE
Confidence 456788999885 66666 56799999999999999998877543 334578899999998 444 899999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeec--CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----------
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCS--PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT---------- 285 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~---------- 285 (458)
+||+++++....+..+. ..|.++++. +++..+++++.+ |.|++||+++.....
T Consensus 187 vwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~~~~ 251 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHN--STVRCLDIVEYKNIKYIVTGSRD-------------NTLHVWKLPKESSVPDHGEEHDYPL 251 (464)
T ss_dssp EEETTTTEEEEEECCCS--SCEEEEEEEESSSCEEEEEEETT-------------SCEEEEECCCCCCC------CCSSE
T ss_pred EEECCCCcEEEEECCCC--CccEEEEEecCCCCCEEEEEcCC-------------CcEEEeeCCCCcccccccccCCcce
Confidence 99999999888887655 789999888 577889999988 599999998866432
Q ss_pred -----------EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec
Q 012699 286 -----------VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 286 -----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 354 (458)
.....+|...+.++ +++++++++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 252 VFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp EESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred EeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 12234676777766 67789999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV 434 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~ 434 (458)
.||.|++||++++...... ..+...+.+++|+ +++|++++.|+.|++||+.+...... ..|...+..+
T Consensus 330 ~dg~i~vwd~~~~~~~~~~---------~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~~~~ 397 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTL---------QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAIT 397 (464)
T ss_dssp TTSCEEEEETTTTEEEEEE---------CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-EECTTCCCEE
T ss_pred CCCcEEEEECCCCcEEEEE---------eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee-ecCCCCccEE
Confidence 9999999999876544322 2467789999997 58999999999999999988654332 2467788889
Q ss_pred EECCCCCeEEEecCCCcEEEEeCC
Q 012699 435 DWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 435 ~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+|+|++++|++++ ||.|++||+.
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETT
T ss_pred EEEeCCCEEEEec-CCeEEEEECC
Confidence 9999999999998 8999999974
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-37 Score=282.04 Aligned_cols=259 Identities=14% Similarity=0.257 Sum_probs=216.0
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIK 217 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 217 (458)
.+..+.+|.+.|++++|+|++++|++|+.||.|++||+.............|...|.+++|+|+ ++.+|++++.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 4567889999999999999999999999999999999975433323334457789999999843 388999999999999
Q ss_pred EEEcCCCc--eeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 218 AWNVDAKR--VVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 218 ~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+||+.+++ ....+.. +...+.+++|+|+ +..+++++.+ |.|++||+++...........|.
T Consensus 83 iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp EEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEECCTTSCCCEEEEECCT
T ss_pred EEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecCC-------------CcEEEEecCCCCceeeEEecCCC
Confidence 99999987 4444443 4478999999999 8999999988 59999999988665555556788
Q ss_pred CcEEEEEEcc-------------CCCEEEEEecCCeEEEEeCCCCc----eeeeeeCCCCCeEEEEEcCC---CCEEEEe
Q 012699 294 PAITSLCFNH-------------NGKILAASAVDGMIHMFDMSAGL----QITGWPAHDSAISSILFGPD---ETSIFSL 353 (458)
Q Consensus 294 ~~i~~~~~~~-------------~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~l~~~ 353 (458)
..|.+++|+| ++.+|++++.||.|++||++++. ....+.+|...|.+++|+|+ +++|+++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 8999999999 69999999999999999998764 45677889999999999999 8999999
Q ss_pred cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 354 GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 354 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
+.||.|++||+.+....... .......+...+.+++|+|+|++|++++.||.|++|++.
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKK----TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEE----EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred eCCCEEEEEeCCCCCcccee----eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 99999999999976432111 122233567789999999999999999999999999987
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=291.09 Aligned_cols=309 Identities=13% Similarity=0.134 Sum_probs=238.0
Q ss_pred Hhhccc-cCCCcceeeeeeccC-CCceeeeeecCcceEEeccccccccccce-eeeeccCCceeeeeCCccceeEeeccC
Q 012699 15 AQLSRL-KNNSETIKYANIGQT-KNSTLASGVNEESLLLSTNSSEACATTAT-HMGSAEMGQTWASSRPALSRFATNMSG 91 (458)
Q Consensus 15 ~~~~~l-~~h~~~i~~~~~~s~-~~~~l~s~~~d~~~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (458)
+.+..+ .+|...|++++| ++ ++++||+|+.|+++++|+........... .......+....+.+.+++.++++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~-s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAV-SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEE-ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEE-CCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC
Confidence 345677 899999999999 99 99999999999999999998722111110 111123445566777788899999999
Q ss_pred CCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeee--cc--CCCCeEEEE--eCCCCCEEEEE
Q 012699 92 NDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETF--LG--HTSPISCCR--FSSSGNNIASA 165 (458)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--h~~~v~~~~--~~~~~~~l~s~ 165 (458)
|+++++|++....... ..... ....++.+ .. +...+.++. ++|++++|+++
T Consensus 132 dg~i~vwd~~~~~~~~--~~~~~---------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 132 DGQIIVLKVNHYQQES--EVKFL---------------------NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp TSEEEEEEEEEEEETT--EEEEE---------------------EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEEeccccCCc--eeecc---------------------ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 9999999986321110 00000 00111121 12 677788888 67899999999
Q ss_pred eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeee--
Q 012699 166 SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLK-- 243 (458)
Q Consensus 166 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~-- 243 (458)
+.|++|++||+.+++.........|...|.+++|+ +++.+|++++.||.|++||+++++.+..+.... ...|.+++
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~ 266 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVC 266 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEEC
T ss_pred eCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEec
Confidence 99999999999988765433322267899999999 678999999999999999999999888775332 25799994
Q ss_pred --ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC------------------------CCCCcEE
Q 012699 244 --CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG------------------------EDPPAIT 297 (458)
Q Consensus 244 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~------------------------~~~~~i~ 297 (458)
++|++..+++++.+ |.|++||+++++....+... .|...|.
T Consensus 267 ~~~s~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSK-------------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp TTTCTTEEEEEEESTT-------------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred cccCCCccEEEEEcCC-------------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 45567799998888 59999999998887776522 1556789
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-------------------------------------CCCCeEE
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-------------------------------------HDSAISS 340 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------------------------------------~~~~v~~ 340 (458)
+++|+ ++++|++|+.||.|++||+.+++....+.+ |...|++
T Consensus 334 ~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 412 (437)
T 3gre_A 334 TISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS 412 (437)
T ss_dssp CEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred EEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence 99999 778999999999999999999887776665 8899999
Q ss_pred EEEcCC--CCEEEEecCCCeEEEEe
Q 012699 341 ILFGPD--ETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 341 ~~~~~~--~~~l~~~~~dg~i~iwd 363 (458)
++|+++ +.+|++++.||.|++|+
T Consensus 413 i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 413 ISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EeeeccCCceEEEEEcCCceEEEeC
Confidence 999998 77999999999999995
No 92
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.1e-37 Score=279.54 Aligned_cols=307 Identities=12% Similarity=0.145 Sum_probs=239.1
Q ss_pred eccCCCeeeeeeeeeeccCCCCeEEEEeCCC---CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCC
Q 012699 128 GEEDFPEVKVDFLETFLGHTSPISCCRFSSS---GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSD 204 (458)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 204 (458)
+...+...+.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+...........|...|.+++|+ +++
T Consensus 20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~ 98 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWS-DDG 98 (368)
T ss_dssp ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEEC-TTS
T ss_pred EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEEC-cCC
Confidence 3444555555678889999999999999999 699999999999999999873333223445678899999999 688
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeee--cCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC--SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
++|++++.||.|++||+++++...... +...+.+++| +|++..+++++.+ |.|++||+++++
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~d-------------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQIAQ---HDAPVKTIHWIKAPNYSCVMTGSWD-------------KTLKFWDTRSSN 162 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEEEECSSCEEEEEEETT-------------SEEEEECSSCSS
T ss_pred CEEEEEcCCCcEEEEEcCCCCceeecc---ccCceEEEEEEeCCCCCEEEEccCC-------------CcEEEEECCCCc
Confidence 899999999999999999998776433 3378999999 9999999999988 599999999999
Q ss_pred eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee--eCCCCCeEEEEEcCCCCE----EEEecCC
Q 012699 283 AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW--PAHDSAISSILFGPDETS----IFSLGSD 356 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~~~~~d 356 (458)
....+... ..+.++.+.+ ..+++++.++.+.+|+++........ ..+...+.++++.++... +++++.|
T Consensus 163 ~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 163 PMMVLQLP---ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp CSEEEECS---SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred EEEEEecC---CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 88888643 3466666664 47888999999999999875443322 234456677777665544 9999999
Q ss_pred CeEEEEeccCCCe--eEEeecCCc----ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCc
Q 012699 357 GKIIEWSLQNQGQ--VLWTRNCSR----FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAA 430 (458)
Q Consensus 357 g~i~iwd~~~~~~--~~~~~~~~~----~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~ 430 (458)
|.|++||++.... ......... ......+...+.+++|+|++++|++++.||.|++||+.+...+..+.+|...
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 317 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP 317 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC
Confidence 9999999987532 111111111 0111122236999999999999999999999999999998887788899999
Q ss_pred EEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 431 ITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 431 v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
|++++|+|++++|++++.|+..+.|+
T Consensus 318 v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 318 ISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred ceEEEECCCCCeEEEEeccccccccc
Confidence 99999999999999999987655443
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-36 Score=279.13 Aligned_cols=251 Identities=18% Similarity=0.286 Sum_probs=206.0
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC-C
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD-A 223 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~ 223 (458)
.|...|++++|+|++++|++|+.||.|++||+.+++... ....+...|.+++|+ +.++++++.||.|++||++ .
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~ 206 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--TMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIA 206 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--EecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccC
Confidence 388999999999999999999999999999998876543 334677899999996 4689999999999999999 4
Q ss_pred CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (458)
+.....+..+. ..+.+++|+|++..+++++.+ |.|++||+++++....+. .|...|.+++|+|
T Consensus 207 ~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d-------------~~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p 269 (401)
T 4aez_A 207 NHQIGTLQGHS--SEVCGLAWRSDGLQLASGGND-------------NVVQIWDARSSIPKFTKT--NHNAAVKAVAWCP 269 (401)
T ss_dssp SCEEEEEECCS--SCEEEEEECTTSSEEEEEETT-------------SCEEEEETTCSSEEEEEC--CCSSCCCEEEECT
T ss_pred cceeeEEcCCC--CCeeEEEEcCCCCEEEEEeCC-------------CeEEEccCCCCCccEEec--CCcceEEEEEECC
Confidence 55556665544 789999999999999999988 599999999988877664 6778899999999
Q ss_pred CC-CEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE--ecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 304 NG-KILAASA--VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS--LGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 304 ~~-~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
++ .++++++ .|+.|++||+++++.+..+. +...|.+++|+|+++++++ |+.||.|++||+.+.......
T Consensus 270 ~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~----- 343 (401)
T 4aez_A 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV----- 343 (401)
T ss_dssp TSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEE-----
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEE-----
Confidence 76 4566654 79999999999999988876 6678999999999999998 558999999999875433211
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~ 425 (458)
....+...|.+++|+|+|++|++++.||.|++|++.+++......
T Consensus 344 --~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 344 --DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp --EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred --EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 123567789999999999999999999999999999886655443
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-37 Score=280.99 Aligned_cols=263 Identities=16% Similarity=0.242 Sum_probs=215.0
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
.+..+.+|...|++++| ++++++|++|+.|+.+++|+.....
T Consensus 3 ~~~~~~~h~~~v~~~~~-s~~~~~l~~~~~dg~i~iw~~~~~~------------------------------------- 44 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVL-DYYGKRLATCSSDKTIKIFEVEGET------------------------------------- 44 (379)
T ss_dssp --CCEEECCCCEEEEEE-CSSSSEEEEEETTSCEEEEEEETTE-------------------------------------
T ss_pred ccEEecCCcccEEEEEE-cCCCCEEEEEECCCcEEEEecCCCc-------------------------------------
Confidence 56789999999999999 9999999999999999999875220
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCC--CCEEEEEeCCCcEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSS--GNNIASASVDGTVRI 173 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~v~i 173 (458)
.+.+..+.+|.++|++++|+|+ +++|++++.||.|++
T Consensus 45 -----------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 45 -----------------------------------------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -----------------------------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred -----------------------------------------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 0144567789999999999987 999999999999999
Q ss_pred EecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC------
Q 012699 174 WTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP------ 246 (458)
Q Consensus 174 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~------ 246 (458)
||+.+++.........+...|.+++|+|.+ +.++++++.||.|++||+.++..........+...+.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 999887633333444577899999999432 8899999999999999999875443333334447899999999
Q ss_pred -------CCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccC---CCEEEEEecC
Q 012699 247 -------VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHN---GKILAASAVD 314 (458)
Q Consensus 247 -------~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d 314 (458)
++..+++++.+ |.|++||++++... ....+..|...|.+++|+|+ +++|++++.|
T Consensus 164 ~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d 230 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGAD-------------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 230 (379)
T ss_dssp ------CTTCEEEEEETT-------------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ccccCCCCCCEEEEEeCC-------------CeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence 68899999888 59999999876533 22345678889999999999 8999999999
Q ss_pred CeEEEEeCCCCc-----eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 315 GMIHMFDMSAGL-----QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 315 g~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
|.|++||++++. .+.....|...|.+++|+|++++|++++.||.|++|++......
T Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999999998864 22233458899999999999999999999999999999865443
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.2e-36 Score=280.42 Aligned_cols=277 Identities=15% Similarity=0.306 Sum_probs=233.7
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
....+|...|.+++| ++++|++|+.||+|++||+.+++... ....|...|.+++| ++++|++|+.||.|++||
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd 199 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR--ILTGHTGSVLCLQY---DERVIITGSSDSTVRVWD 199 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--EECCCSSCEEEEEC---CSSEEEEEETTSCEEEEE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE--EEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEE
Confidence 344567888999887 78899999999999999998877543 33457788999998 477999999999999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCcEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPAITSL 299 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~i~~~ 299 (458)
+.+++....+..+. ..+.++.+++ ..+++++.+ |.|++||+++++.... ....+|...|.++
T Consensus 200 ~~~~~~~~~~~~h~--~~v~~l~~~~--~~l~s~s~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 200 VNTGEMLNTLIHHC--EAVLHLRFNN--GMMVTCSKD-------------RSIAVWDMASPTDITLRRVLVGHRAAVNVV 262 (435)
T ss_dssp SSSCCEEEEECCCC--SCEEEEECCT--TEEEEEETT-------------SCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred CCCCcEEEEEcCCC--CcEEEEEEcC--CEEEEeeCC-------------CcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence 99999988887655 6899999974 588888887 5999999998776532 2345788899999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcc
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
+| ++++|++|+.||.|++||+++++.+..+.+|...|.+++|+ ++++++++.||.|++||++++......
T Consensus 263 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~------ 332 (435)
T 1p22_A 263 DF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL------ 332 (435)
T ss_dssp EE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE------
T ss_pred Ee--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE------
Confidence 99 67899999999999999999999999999999999999994 679999999999999999986544322
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC---------cccccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA---------SGMRTLPHGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
..+...+.+++| ++++|++|+.||.|++||+.+.. ....+.+|...|++++| ++++|++++.||
T Consensus 333 ---~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg 405 (435)
T 1p22_A 333 ---EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD 405 (435)
T ss_dssp ---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred ---eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCC
Confidence 246677899888 88999999999999999997654 34455689999999999 678999999999
Q ss_pred cEEEEeCC
Q 012699 451 SVQVMSLS 458 (458)
Q Consensus 451 ~v~iw~l~ 458 (458)
.|++||+.
T Consensus 406 ~i~iwd~~ 413 (435)
T 1p22_A 406 TILIWDFL 413 (435)
T ss_dssp EEEEEC--
T ss_pred EEEEEECC
Confidence 99999973
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=283.94 Aligned_cols=305 Identities=12% Similarity=0.186 Sum_probs=230.5
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCccccccccc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEF 102 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 102 (458)
|...|++++| +++|++||+|+.|+.++||+...+......
T Consensus 27 ~~~~V~~v~~-s~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------------------------------- 66 (447)
T 3dw8_B 27 EADIISTVEF-NHSGELLATGDKGGRVVIFQQEQENKIQSH--------------------------------------- 66 (447)
T ss_dssp GGGSEEEEEE-CSSSSEEEEEETTSEEEEEEECC-----CC---------------------------------------
T ss_pred ccCcEEEEEE-CCCCCEEEEEcCCCeEEEEEecCCCCCCcc---------------------------------------
Confidence 5788999999 999999999999999999998766211000
Q ss_pred ccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCC------------CCeEEEEeCCCC--CEEEEEeCC
Q 012699 103 EDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHT------------SPISCCRFSSSG--NNIASASVD 168 (458)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~s~~~d 168 (458)
. . ...+....+.+|. +.|++++|+|++ .+|++++.|
T Consensus 67 ------------------~----------~--~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d 116 (447)
T 3dw8_B 67 ------------------S----------R--GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTND 116 (447)
T ss_dssp ------------------C----------C--CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECS
T ss_pred ------------------c----------c--cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCC
Confidence 0 0 0011445666787 889999999998 799999999
Q ss_pred CcEEEEecCCCCCCC--------------------------------------ccccccCCCceEEEEEecCCCeEEEEE
Q 012699 169 GTVRIWTYDSSTPAS--------------------------------------RNATIYCGTEIMSLEWECKSDRLLLIG 210 (458)
Q Consensus 169 g~v~iwd~~~~~~~~--------------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~ 210 (458)
++|++||+.++.... ......|...|.+++|+ +++++|+++
T Consensus 117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~ 195 (447)
T 3dw8_B 117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN-SDYETYLSA 195 (447)
T ss_dssp SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC-TTSSEEEEE
T ss_pred CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc-CCCCEEEEe
Confidence 999999987532210 00123467889999999 678899998
Q ss_pred cCCCcEEEEEcCC-Cceeeec-----cCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 211 TADGGIKAWNVDA-KRVVCDL-----NTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 211 ~~dg~i~~wd~~~-~~~~~~~-----~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
.|+.|++||+++ ++....+ ....+...|.+++|+|++ ..+++++.+ |.|++||+++++.
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~ 261 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK-------------GTIRLCDMRASAL 261 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT-------------SCEEEEETTTCSS
T ss_pred -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC-------------CeEEEEECcCCcc
Confidence 799999999994 4444322 122334689999999998 899999988 5999999998876
Q ss_pred ----eEEeecCCCCC------------cEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCCCC---------
Q 012699 284 ----MTVLPLGEDPP------------AITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHDSA--------- 337 (458)
Q Consensus 284 ----~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~--------- 337 (458)
...+. .+.. .|.+++|+|++++|++++. +.|++||+++ ++++..+..|...
T Consensus 262 ~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 262 CDRHSKLFE--EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SCTTCEEEC--CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccceeeEec--cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 55554 4443 7999999999999999998 9999999997 8888899888642
Q ss_pred ------eEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc-----------------------ccCCCCCCCc
Q 012699 338 ------ISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR-----------------------FCDPESSKSC 388 (458)
Q Consensus 338 ------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 388 (458)
+..++|+|++++|++++.||.|++||+.+.+.......... ..........
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 33499999999999999999999999998765432211000 0001134557
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEcc
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
+..++|+|++++||+++.++ +++|..+
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eeEEEECCCCCEEEEEecce-eeeeccc
Confidence 88999999999999998876 8888643
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.5e-37 Score=276.29 Aligned_cols=249 Identities=17% Similarity=0.184 Sum_probs=202.6
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCC
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGS 262 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~ 262 (458)
...|...|.+++|+ +++++|++|+.|++|++||+.+++. +..+..| ...|.+++|++ ++..+++++.|
T Consensus 9 ~~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH--~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 9 DTSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH--EGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp -----CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC--SSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred cccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC--CccEEEEEeCCCCCCCEEEEEECC-----
Confidence 34578899999999 6788999999999999999988753 4455544 47899999986 48899999988
Q ss_pred cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCCce---eeeeeCCCCC
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAGLQ---ITGWPAHDSA 337 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~ 337 (458)
+.|++||+++++......+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...
T Consensus 81 --------~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 81 --------RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp --------SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred --------CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC
Confidence 5999999998754444455678889999999997 78999999999999999987532 4556789999
Q ss_pred eEEEEEcCC-----------------CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC--
Q 012699 338 ISSILFGPD-----------------ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG-- 398 (458)
Q Consensus 338 v~~~~~~~~-----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-- 398 (458)
|.+++|+|+ +++|++++.|+.|++||++....... ......|...|.+++|+|++
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~------~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE------EQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE------EECCBCCSSCEEEEECCCCSSC
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce------eeecccCCCceEEEEecCCCCC
Confidence 999999997 46899999999999999975432111 11234678889999999987
Q ss_pred --CEEEEEeCCccEEEEEccCCC----cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 399 --RRLLVTSGSVRAPIYQVRGHA----SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 399 --~~l~~~~~~~~i~i~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
++|++++.|++|++|++.... ....+.+|...|.+++|+|++++||+++.||+|+||++
T Consensus 227 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 227 PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEE
T ss_pred CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEE
Confidence 899999999999999997632 12233468899999999999999999999999999985
No 98
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.5e-36 Score=272.24 Aligned_cols=285 Identities=15% Similarity=0.148 Sum_probs=234.3
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
....+|...|++++| ++++++|++++.|+.+++|+...+...
T Consensus 5 ~~~~~h~~~v~~~~~-s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------------------------- 46 (342)
T 1yfq_A 5 QIEQAPKDYISDIKI-IPSKSLLLITSWDGSLTVYKFDIQAKN------------------------------------- 46 (342)
T ss_dssp ECSSCCSSCEEEEEE-EGGGTEEEEEETTSEEEEEEEETTTTE-------------------------------------
T ss_pred ecccCCCCcEEEEEE-cCCCCEEEEEcCCCeEEEEEeCCCCcc-------------------------------------
Confidence 345689999999999 999999999999999999987644100
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEec
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTY 176 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~ 176 (458)
.....+.+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 47 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 47 ----------------------------------------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp ----------------------------------------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ----------------------------------------ccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 01223447999999999999999 9999999999999999
Q ss_pred -CCCCCCCcccccc--CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---------CceeeeccCCCCCCceeeeee
Q 012699 177 -DSSTPASRNATIY--CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---------KRVVCDLNTTDAFPSVLDLKC 244 (458)
Q Consensus 177 -~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~~~~~~~~~~~~v~~~~~ 244 (458)
.+++.. .... +...|.+++|+| +.++++++.|+.|++||+++ ++.+..+. +...+.+++|
T Consensus 87 ~~~~~~~---~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~ 158 (342)
T 1yfq_A 87 IGSPSFQ---ALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDT 158 (342)
T ss_dssp SSSSSEE---ECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEE
T ss_pred ccCCceE---eccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEe
Confidence 776542 3344 778999999995 88999999999999999987 66665555 3368999999
Q ss_pred cCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeC
Q 012699 245 SPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDM 322 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~ 322 (458)
+|++ +++++.+ |.|++||+++ +..........+...+.+++|+| +++++++++.||.|++|++
T Consensus 159 ~~~~--l~~~~~d-------------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 159 NSSR--LIVGMNN-------------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp CSSE--EEEEEST-------------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred cCCc--EEEEeCC-------------CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 9988 7777776 5999999998 65433333346777899999999 9999999999999999999
Q ss_pred CCC------ceeeeeeCCCC---------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC-C
Q 012699 323 SAG------LQITGWPAHDS---------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS-K 386 (458)
Q Consensus 323 ~~~------~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~ 386 (458)
+.. +....+..|.. .|.+++|+|++++|++++.||.|++||+.+.+.... ...+ .
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------~~~~h~ 294 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN---------FAKFNE 294 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE---------CCCCSS
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhh---------hhcccC
Confidence 886 77888888865 999999999999999999999999999997654332 2244 7
Q ss_pred CceeEEEEccCCCEEEEEeCCcc-EEEEE
Q 012699 387 SCRHEMALDVNGRRLLVTSGSVR-APIYQ 414 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~~~~~~-i~i~~ 414 (458)
..|.+++ |++++|++++.||. .+.+.
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCceEec--CCCCeEEEEecCCccccccc
Confidence 7899999 99999999999997 44433
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=271.71 Aligned_cols=291 Identities=15% Similarity=0.213 Sum_probs=233.6
Q ss_pred hhccccCCCcceeeeeeccCC---CceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCC
Q 012699 16 QLSRLKNNSETIKYANIGQTK---NSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGN 92 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~---~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (458)
.++.+.+|...|+|++| +|+ |++|++|+.|+.+++|+..... .
T Consensus 31 ~~~~~~~h~~~v~~~~~-~~~~~~g~~l~~~~~dg~i~iw~~~~~~------------~--------------------- 76 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSF-SPPTLPGNFLIAGSWANDVRCWEVQDSG------------Q--------------------- 76 (368)
T ss_dssp CEECSSCCSSCEEEEEE-CCTTSSSEEEEEEETTSEEEEEEECTTS------------C---------------------
T ss_pred eeEeccCCCCceEEEEE-cCCCCCceEEEEECCCCcEEEEEcCCCC------------c---------------------
Confidence 45678899999999999 888 6999999999999999876420 0
Q ss_pred CcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEE
Q 012699 93 DSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVR 172 (458)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 172 (458)
.....+.+|.+.|++++|+|++++|++++.||+|+
T Consensus 77 ---------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 77 ---------------------------------------------TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp ---------------------------------------------EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---------------------------------------------eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 02245668999999999999999999999999999
Q ss_pred EEecCCCCCCCccccccCCCceEEEEE--ecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCe
Q 012699 173 IWTYDSSTPASRNATIYCGTEIMSLEW--ECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 173 iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
+||+.+++... ...+...|.+++| + +++.+|++++.||.|++||+++++.+..+..+. .+.++.+.+ ..
T Consensus 112 iwd~~~~~~~~---~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~--~~ 182 (368)
T 3mmy_A 112 MWDLSSNQAIQ---IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCYCADVIY--PM 182 (368)
T ss_dssp EEETTTTEEEE---EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEEEEEEET--TE
T ss_pred EEEcCCCCcee---eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---CceEEEecC--Ce
Confidence 99998876542 4567889999999 5 678899999999999999999998887777653 455555554 46
Q ss_pred EEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE----EEEEecCCeEEEEeCCCC-
Q 012699 251 FVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI----LAASAVDGMIHMFDMSAG- 325 (458)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~~dg~i~v~d~~~~- 325 (458)
++++..+ +.+.+|+++................+.++++.++... +++++.||.|++||++..
T Consensus 183 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 183 AVVATAE-------------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp EEEEEGG-------------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred eEEEeCC-------------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 6666666 5999999988665544433444556777777766554 999999999999999887
Q ss_pred --ceeeeeeCCCC------------CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 326 --LQITGWPAHDS------------AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 326 --~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
..+..+..|.. +|.+++|+|++++|++++.||.|++||+.+...... ...+...+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~ 320 (368)
T 3mmy_A 250 PAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT---------SEQLDQPISA 320 (368)
T ss_dssp HHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE---------CCCCSSCEEE
T ss_pred ccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE---------ecCCCCCceE
Confidence 56777788776 799999999999999999999999999997654332 2256778999
Q ss_pred EEEccCCCEEEEEeCCccEEEEEcc
Q 012699 392 MALDVNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~~~i~i~~~~ 416 (458)
++|+|+|++|++++.|+..+.|++.
T Consensus 321 ~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 321 CCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEECCCCCeEEEEeccccccccccc
Confidence 9999999999999998755555443
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.1e-35 Score=273.29 Aligned_cols=278 Identities=20% Similarity=0.327 Sum_probs=234.7
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
....+.+|.+.|.. ++++++++|++|+.||+|++||+.+++... ....|...|.+++|+ ++++++++.||.|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--TLVGHTGGVWSSQMR---DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--ECCCCSSCEEEEEEE---TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE--EEcCCCCCEEEEEec---CCEEEEEeCCCeEEE
Confidence 45678899987633 244568899999999999999998887643 334577899999997 568999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITS 298 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~ 298 (458)
||+.+++....+..+. ..|.++.++ +..+++++.+ |.|++||+.+++....+. .|...+.+
T Consensus 184 wd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~--~~~~~v~~ 244 (445)
T 2ovr_B 184 WNAETGECIHTLYGHT--STVRCMHLH--EKRVVSGSRD-------------ATLRVWDIETGQCLHVLM--GHVAAVRC 244 (445)
T ss_dssp EETTTTEEEEEECCCS--SCEEEEEEE--TTEEEEEETT-------------SEEEEEESSSCCEEEEEE--CCSSCEEE
T ss_pred EECCcCcEEEEECCCC--CcEEEEEec--CCEEEEEeCC-------------CEEEEEECCCCcEEEEEc--CCcccEEE
Confidence 9999999988887655 679999885 5678888887 599999999998888775 67788999
Q ss_pred EEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 299 LCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 299 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+++ +++++++|+.||.|++||+++++.+..+.+|...|.+++| ++.++++++.|+.|++||+++.+.....
T Consensus 245 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~----- 315 (445)
T 2ovr_B 245 VQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL----- 315 (445)
T ss_dssp EEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE-----
T ss_pred EEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE-----
Confidence 999 6789999999999999999999999999999999999999 7889999999999999999987554322
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC---CCCcEEEEEECCCCCeEEEecCCCcEEEE
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP---HGAAITTVDWHPTLPMFLTGSADHSVQVM 455 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 455 (458)
..+...+.++.+ ++++|++++.||.|++||+.+++....+.+ |...|++++|+ +++|++|+.||.|++|
T Consensus 316 ----~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 387 (445)
T 2ovr_B 316 ----TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387 (445)
T ss_dssp ----CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred ----cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEE
Confidence 234555666655 677999999999999999988876666654 88999999996 5799999999999999
Q ss_pred eCC
Q 012699 456 SLS 458 (458)
Q Consensus 456 ~l~ 458 (458)
|+.
T Consensus 388 d~~ 390 (445)
T 2ovr_B 388 DLK 390 (445)
T ss_dssp ETT
T ss_pred ECC
Confidence 974
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.8e-36 Score=277.97 Aligned_cols=285 Identities=13% Similarity=0.201 Sum_probs=230.8
Q ss_pred CeEEEEeCCCCCEE-EEEeCCCcEEEEecCCCCCC--CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-
Q 012699 149 PISCCRFSSSGNNI-ASASVDGTVRIWTYDSSTPA--SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK- 224 (458)
Q Consensus 149 ~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~- 224 (458)
....++++|+...+ ++++.||.|+||++...... .......|...|.+++|+|.++.+|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34568889886544 45788999999998654221 112234577899999999548899999999999999999987
Q ss_pred ------ceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 225 ------RVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 225 ------~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+....+..+. ..|.+++|+|++ ..+++++.+ |.|++||+++++....+....|...|.
T Consensus 116 ~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 116 LVLPLREPVITLEGHT--KRVGIVAWHPTAQNVLLSAGCD-------------NVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp CSSCBCSCSEEEECCS--SCEEEEEECSSBTTEEEEEETT-------------SCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred CccccCCceEEecCCC--CeEEEEEECcCCCCEEEEEcCC-------------CEEEEEECCCCCccEEEecCCCCCceE
Confidence 4455555444 789999999998 688888888 599999999998888774357888999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCceeeee-eCCCCC-eEEEEEcCCCCEEEEe---cCCCeEEEEeccCCCeeEE
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW-PAHDSA-ISSILFGPDETSIFSL---GSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~ 372 (458)
+++|+|++++|++++.||.|++||+++++.+..+ ..|.+. +.+++|+|++++|+++ +.|+.|++||+++......
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~ 260 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE
T ss_pred EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce
Confidence 9999999999999999999999999999999888 788776 8999999999999999 7999999999998654222
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCc-ccccC--CCCCcEEEEEECCCCCeEEEecC
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHAS-GMRTL--PHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
.. ...+...+..++|+|++++|++++ .|+.|++|++.+.+. ...+. .|...|.+++|+|++.++++ .
T Consensus 261 ~~-------~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 261 LQ-------ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp EE-------ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred EE-------eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 11 113456689999999999997554 699999999998764 22232 36699999999999998764 4
Q ss_pred CCcEEEEeC
Q 012699 449 DHSVQVMSL 457 (458)
Q Consensus 449 dg~v~iw~l 457 (458)
|+.+++|++
T Consensus 332 ~~~~~~~~l 340 (402)
T 2aq5_A 332 CEIARFYKL 340 (402)
T ss_dssp TEEEEEEEE
T ss_pred ceeEEEEEc
Confidence 669999986
No 102
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.9e-35 Score=271.06 Aligned_cols=290 Identities=16% Similarity=0.236 Sum_probs=219.9
Q ss_pred eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEE
Q 012699 84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIA 163 (458)
Q Consensus 84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 163 (458)
.+|++|. |++|++|++..... ..+..+.+|...|++++|+|+|++|+
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~--------------------------------~~~~~~~~~~~~V~sv~fspdg~~la 163 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDI--------------------------------LQLLQMEQPGEYISSVAWIKEGNYLA 163 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCE--------------------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred CEEEEEe-CCEEEEEECCCCCE--------------------------------EEEEEecCCCCcEEEEEECCCCCEEE
Confidence 3566664 88999999765320 02224557889999999999999999
Q ss_pred EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccCCCCCCceeee
Q 012699 164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~v~~~ 242 (458)
+|+.||+|++||+.+++... ....|...+.+++|+ +.++++|+.|+.+++||..... .+..+..+. ..+..+
T Consensus 164 sgs~Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~~~~~~ 236 (420)
T 4gga_A 164 VGTSSAEVQLWDVQQQKRLR--NMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEVCGL 236 (420)
T ss_dssp EEETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEE
T ss_pred EEECCCeEEEEEcCCCcEEE--EEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccc--cceeee
Confidence 99999999999999887643 344567788888876 5789999999999999988654 344454444 689999
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE--EeecCCCCCcEEEEEEccCC-CEEEE--EecCCeE
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--VLPLGEDPPAITSLCFNHNG-KILAA--SAVDGMI 317 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i 317 (458)
.+.|++..+++++.| |.+++|+..+++... ......+...|.+++|+|.+ .++++ |+.|+.|
T Consensus 237 ~~~~~g~~l~s~~~D-------------~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 237 RWAPDGRHLASGGND-------------NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EECTTSSEEEEEETT-------------SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred eecCCCCeeeeeecc-------------ccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 999999999999988 599999998765321 22235677889999999965 45554 4579999
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
++||+.++++...+..| ..+.++.|+|+++.+++++ .|+.|++||+.+...+... .+|...|.+++|+
T Consensus 304 ~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l---------~gH~~~V~~l~~s 373 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL---------KGHTSRVLSLTMS 373 (420)
T ss_dssp EEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE---------CCCSSCEEEEEEC
T ss_pred EEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE---------cCCCCCEEEEEEc
Confidence 99999999998888754 5688999999999888764 6999999999987654322 3578899999999
Q ss_pred cCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699 396 VNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436 (458)
Q Consensus 396 ~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~ 436 (458)
|+|++|++++.|++|++||+.......+...+...+....|
T Consensus 374 pdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 374 PDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp TTSSCEEEEETTTEEEEECCSCSSCC---------------
T ss_pred CCCCEEEEEecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999999999999876555444445444444443
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-35 Score=277.00 Aligned_cols=265 Identities=18% Similarity=0.309 Sum_probs=199.3
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
...+.+|.+.|.+++| ++++|++|+.||+|++||+.+++... ....+...|.+++|+ +..+++++.||.|++|
T Consensus 166 ~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 166 KRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--TLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--EECCCCSCEEEEECC---TTEEEEEETTSCEEEE
T ss_pred EEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--EEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEE
Confidence 3456689999999999 78899999999999999999887643 334577889999996 3589999999999999
Q ss_pred EcCCCcee---eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 220 NVDAKRVV---CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 220 d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
|+.++... ..+..+ ...+.++.+ ++..+++++.+ |.|++||+++++....+. .|...+
T Consensus 239 d~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~--~~~~~v 299 (435)
T 1p22_A 239 DMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGD-------------RTIKVWNTSTCEFVRTLN--GHKRGI 299 (435)
T ss_dssp ECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETT-------------SEEEEEETTTCCEEEEEE--CCSSCE
T ss_pred eCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCC-------------CeEEEEECCcCcEEEEEc--CCCCcE
Confidence 99987755 333333 367888888 77899999888 599999999999888775 677889
Q ss_pred EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 297 TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
.+++++ ++++++|+.||.|++||+++++++..+.+|...|.+++| ++.+|++++.||.|++||+.+..........
T Consensus 300 ~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 300 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred EEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccc
Confidence 999984 679999999999999999999999999999999999999 6889999999999999999765321000000
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH 437 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 437 (458)
........|...|.+++| ++++|++++.||.|++||+.+....... ....+..++.|.
T Consensus 376 ~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 433 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAE-PPRSPSRTYTYI 433 (435)
T ss_dssp TEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----------------------
T ss_pred hheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccC-CCCCCccceeee
Confidence 011122357778999999 7889999999999999999876543322 223344555554
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.5e-35 Score=265.31 Aligned_cols=262 Identities=16% Similarity=0.215 Sum_probs=218.0
Q ss_pred ccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccc
Q 012699 18 SRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISP 97 (458)
Q Consensus 18 ~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 97 (458)
+.+.+|...|++++| ++++++|++|+.|+++++|+...+..
T Consensus 5 ~~~~gH~~~v~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------- 45 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTS-------------------------------------- 45 (351)
T ss_dssp CEECCCSSCEEEEEE-CSSSSEEEEEETTSEEEEEEECSSSC--------------------------------------
T ss_pred ccCcccccceeEEEE-cCCCCEEEEeeCCCeEEEEECCCCCC--------------------------------------
Confidence 467899999999999 99999999999999999999764410
Q ss_pred cccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC--CCCEEEEEeCCCcEEEEe
Q 012699 98 SKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS--SGNNIASASVDGTVRIWT 175 (458)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd 175 (458)
..+....+.+|..+|++++|+| ++++|++++.||+|++||
T Consensus 46 --------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 46 --------------------------------------NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp --------------------------------------CEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred --------------------------------------cceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 0014456778999999999999 699999999999999999
Q ss_pred cCCCCCCC-------ccccccCCCceEEEEEecCC--CeEEEEEcCCCcEEEEEcCCCceeeecc-----------CCCC
Q 012699 176 YDSSTPAS-------RNATIYCGTEIMSLEWECKS--DRLLLIGTADGGIKAWNVDAKRVVCDLN-----------TTDA 235 (458)
Q Consensus 176 ~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----------~~~~ 235 (458)
+.++.... ......+...|.+++|+ ++ +.++++++.||.|++||+++++....+. ...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 98764321 22233567889999999 55 8899999999999999999877544332 1234
Q ss_pred CCceeeeeecCC---CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC----CEE
Q 012699 236 FPSVLDLKCSPV---EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG----KIL 308 (458)
Q Consensus 236 ~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l 308 (458)
...+.++.|+|+ +..+++++.+ +.+.+|+...++......+..|...|.+++|+|++ ++|
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALE-------------QAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETT-------------EEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCC-------------CcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 467899999997 8888888887 58888888887776666677888999999999998 899
Q ss_pred EEEecCCeEEEEeCCCC----------------------------------------------ceeeeeeCCCCCeEEEE
Q 012699 309 AASAVDGMIHMFDMSAG----------------------------------------------LQITGWPAHDSAISSIL 342 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~v~~~~ 342 (458)
++|+.||.|++||++++ +.+..+.+|...|++++
T Consensus 234 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 313 (351)
T 3f3f_A 234 ATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS 313 (351)
T ss_dssp EEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred EEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence 99999999999999864 56777889999999999
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
|+|++++|++++.||.|++||+.+.+..
T Consensus 314 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 314 WNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 9999999999999999999999976543
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6e-35 Score=263.75 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=211.0
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
.+..+.+|.+.|++++|+|||++|++|+.++ +++|++.+.+.... .....+..+++.+..+.++++++.|+.|++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS----QEMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE----EECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee----eecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 4445678999999999999999999998775 78999876544321 122247778888555555577888999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCCCCCcEE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGEDPPAIT 297 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~~~~~i~ 297 (458)
||..+++.+..+... ..+.++.++++. ++.+. + +.|++||+.++ +.+..+.. ...
T Consensus 86 Wd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~~-~-------------~~i~i~d~~~~~~~~~~~~~-----~~~ 141 (355)
T 3vu4_A 86 WDDVKKQDVSRIKVD---APVKDLFLSREF--IVVSY-G-------------DVISVFKFGNPWKRITDDIR-----FGG 141 (355)
T ss_dssp EETTTTEEEEEEECS---SCEEEEEECSSE--EEEEE-T-------------TEEEEEESSTTCCBSSCCEE-----EEE
T ss_pred EECCCCcEEEEEECC---CceEEEEEcCCE--EEEEE-c-------------CEEEEEECCCCceeeEEecc-----CCc
Confidence 999999998877643 579999998865 33333 2 49999999987 66555542 345
Q ss_pred EEEEccCCCEEEE--EecCCeEEEEeCCCCc---------------e-eeeeeCCCCCeEEEEEcCCCCEEEEecCCCe-
Q 012699 298 SLCFNHNGKILAA--SAVDGMIHMFDMSAGL---------------Q-ITGWPAHDSAISSILFGPDETSIFSLGSDGK- 358 (458)
Q Consensus 298 ~~~~~~~~~~l~~--~~~dg~i~v~d~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 358 (458)
.+++++ .++++ |+.||.|++||+++++ + +..+.+|.++|.+++|+|++++|++++.|++
T Consensus 142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 566777 56666 5789999999998765 2 7788999999999999999999999999998
Q ss_pred EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc--cc------------
Q 012699 359 IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM--RT------------ 424 (458)
Q Consensus 359 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~--~~------------ 424 (458)
|++||+++++....... ..|...|.+++|+|+|++|++++.|+.|++||+....... .+
T Consensus 220 v~iwd~~~~~~~~~~~~-------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRR-------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp EEEEETTTCCEEEEEEC-------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred EEEEECCCCcEEEEEEc-------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 99999998765543221 1266789999999999999999999999999997643111 00
Q ss_pred --------C-CCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 425 --------L-PHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 425 --------~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
. .+......++|+|+++.|++++.||.+++|++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 0 11223467999999999999999999999986
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-36 Score=296.18 Aligned_cols=261 Identities=13% Similarity=0.239 Sum_probs=213.1
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC-CeEEEEEcCCCcEEE
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS-DRLLLIGTADGGIKA 218 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~ 218 (458)
+..+.+|.++|++++|+|++++|++|+.||+|++||+.++..........|..+|.+++|+|+. +++|++++.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3467899999999999999999999999999999999854433233445577899999998432 889999999999999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
||+.+++.........+...|.+++|+|+ +..+++++.+ |.|++||++++..........|...|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------------g~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------------GKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------------SEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-------------CcEEEEEeecCCCcceeEeecCCCce
Confidence 99999873333333334478999999999 9999999988 59999999988655555556788899
Q ss_pred EEEEEcc-------------CCCEEEEEecCCeEEEEeCCCC----ceeeeeeCCCCCeEEEEEcCC---CCEEEEecCC
Q 012699 297 TSLCFNH-------------NGKILAASAVDGMIHMFDMSAG----LQITGWPAHDSAISSILFGPD---ETSIFSLGSD 356 (458)
Q Consensus 297 ~~~~~~~-------------~~~~l~~~~~dg~i~v~d~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d 356 (458)
.+++|+| ++.+|++|+.||.|++||++++ .....+.+|..+|.+++|+|+ +++|++++.|
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 9999999 5899999999999999999876 556778899999999999999 8999999999
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
|.|++||+.+...... ........+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 229 g~I~iwd~~~~~~~~~----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWK----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCEEEEEESSSSSCCB----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CEEEEecCCCCCCcce----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999987542211 12223345778899999999999999999999999999874
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=272.11 Aligned_cols=264 Identities=8% Similarity=0.058 Sum_probs=208.9
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.-...|.+++|+|||+++||++.|++|+ |....+.+ ..|...|.+++|+| ++ .++.+.+|+.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~gh~~~v~~V~FsP-dg-------~~~~~~~~~~--- 74 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NCNSKNLFHVKEFP-LE-------FENKLDFELA--- 74 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SSBGGGTEEEEEEC-CC-------CCCTTTTSCC---
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee-----cCCCccEEEEEECC-CC-------CcceEEEEeC---
Confidence 4557899999999999999999999999 75444332 35778999999994 44 4555555543
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----cEEEE
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-----AITSL 299 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-----~i~~~ 299 (458)
+....+.... ...|.+++|+|+|..+++++.+ |.+++||.+. ....+ . |.. .+.++
T Consensus 75 ~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~d-------------g~V~iwd~~~--~l~~l--~-~~~~~~~~sv~sv 135 (588)
T 2j04_A 75 QQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNN-------------GNVSVFKDNK--MLTNL--D-SKGNLSSRTYHCF 135 (588)
T ss_dssp CSSCSSTTSC-SCCEEEEEECSSSSCEEEEETT-------------SCEEEEETTE--EEEEC--C-CSSCSTTTCEEEE
T ss_pred CCceEeecCC-CCcEEEEEECCCCCEEEEEeCC-------------CcEEEEeCCc--eeeec--c-CCCccccccEEEE
Confidence 3222232121 4789999999999999999998 5999999654 43433 3 333 59999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCce-------eeee----eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQ-------ITGW----PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG 368 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 368 (458)
+|||+|++|++|+.||+|++||+.++.. +.++ .+|...|.+++|+|+| +++++.|+++++||+.+..
T Consensus 136 afSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 136 EWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp EECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 9999999999999999999999998753 5665 6778899999999999 8888899999999998764
Q ss_pred ee--EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEE--CCCCCeEE
Q 012699 369 QV--LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDW--HPTLPMFL 444 (458)
Q Consensus 369 ~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~ 444 (458)
.. ... + ...+...|.+++|+ |+.||+++ +++|++||+.+........+|.+.|.+++| +|++..|+
T Consensus 214 ~~~~~~t-----L--~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La 283 (588)
T 2j04_A 214 HQPVSRM-----I--QNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL 283 (588)
T ss_dssp SCCCEEE-----E--ECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE
T ss_pred cccceee-----e--cccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE
Confidence 21 000 0 01456789999999 68999887 699999999988664445589999999999 99999999
Q ss_pred EecCCCcEEEEeCC
Q 012699 445 TGSADHSVQVMSLS 458 (458)
Q Consensus 445 s~~~dg~v~iw~l~ 458 (458)
++++||+ ++|.++
T Consensus 284 ~a~edG~-klw~~d 296 (588)
T 2j04_A 284 MSNKTSY-KVLLED 296 (588)
T ss_dssp ECSSCEE-EEEESS
T ss_pred EEcCCCC-EEEeec
Confidence 9999999 999864
No 108
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5.2e-36 Score=274.59 Aligned_cols=339 Identities=14% Similarity=0.127 Sum_probs=213.6
Q ss_pred cccCCCcceeeeeeccCCCceeeeeecCcceEEecccccccc----------------ccceeeeeccCCce--------
Q 012699 19 RLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA----------------TTATHMGSAEMGQT-------- 74 (458)
Q Consensus 19 ~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~----------------~~~~~~~~~~~~~~-------- 74 (458)
.+..++..+..... ++++..|+.++.|+.+.+|+....... .......|.+....
T Consensus 13 pl~~~p~~~~w~~~-~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (393)
T 4gq1_A 13 PLNVRPYTTTWCSQ-SPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD 91 (393)
T ss_dssp CTTCCEEEEEECTT-SGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred cCCCCCeEEEEeCC-CCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence 34455555665555 555555555556888999976533221 11223344433211
Q ss_pred -eeeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE
Q 012699 75 -WASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC 153 (458)
Q Consensus 75 -~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 153 (458)
.....+.+..++++++.|+++++|++..... .....+..+.||.+.|+++
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~-----------------------------~~~~~~~~~~gH~~~v~~v 142 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI-----------------------------ITQHVLGGKSGHHNFVNDI 142 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEE-----------------------------EEEEEECTTTSCSSCEEEE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcc-----------------------------ceeeeecccCCCCCceEEE
Confidence 1233455778899999999999999765321 1112455678999999999
Q ss_pred EeCC--------CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 154 RFSS--------SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 154 ~~~~--------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
+|+| |+++||||+.|++|+|||+.++.... ....+..++.+++|+|.+..+|++++.||+|++||+.+++
T Consensus 143 ~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~--~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 143 DIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL--AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 9998 78999999999999999998765432 4556788999999997666799999999999999999887
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc-cC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN-HN 304 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 304 (458)
................+...+. .........+|...+.++.|+ |+
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~~----------------------------------~~~~~~~~~~~~~~v~~v~~~~~d 266 (393)
T 4gq1_A 221 SAEENSQTELVKNPWLLTLNTL----------------------------------PLVNTCHSSGIASSLANVRWIGSD 266 (393)
T ss_dssp ----------CSCCCSEEEESG----------------------------------GGC------CCSSSCSEEEEETTT
T ss_pred ccccccccCCcccceEEecccc----------------------------------cceeeeecccccccceeeeeecCC
Confidence 6554433321111111111110 001111123566778889887 79
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPES 384 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 384 (458)
++.|++++.|+.+++||+..++....+..|...+..+.+.|+.+.+.....
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 317 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS----------------------------- 317 (393)
T ss_dssp TCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-----------------------------
T ss_pred CCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-----------------------------
Confidence 999999999999999999998888888888888888888887543321110
Q ss_pred CCCceeEEEEcc--CCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 385 SKSCRHEMALDV--NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 385 ~~~~v~~~~~s~--~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.....++| ++.++++|+.|+.|++||+.++.......+|..+|++++|+|||++||+++.|| +.+|++
T Consensus 318 ----~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 318 ----LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ----SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ----ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 11122333 455677788899999999999887777788999999999999999999999776 555543
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.2e-35 Score=272.05 Aligned_cols=293 Identities=12% Similarity=0.096 Sum_probs=226.0
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC---CCCccc--------------------------------------
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSST---PASRNA-------------------------------------- 186 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~-------------------------------------- 186 (458)
.++.+++|+|+|++|+++ .++.|++||+.+++ ......
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999976665 57899999998877 211100
Q ss_pred --------------cccCCCceEEEEEecCCCeE-EEEEcCCCcEEEEEcC--CCceeeeccCCCCCCceeeeeecCCCC
Q 012699 187 --------------TIYCGTEIMSLEWECKSDRL-LLIGTADGGIKAWNVD--AKRVVCDLNTTDAFPSVLDLKCSPVEP 249 (458)
Q Consensus 187 --------------~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~ 249 (458)
...+...|.+++|+ +++.+ +++++.||.|++||+. +++....+..+.+...+.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 00122369999999 56666 5899999999999999 888887776544457899999999999
Q ss_pred eEEEeecccCCCCcceeeccceeEEEEECCCCceeE--EeecCCCCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCC
Q 012699 250 IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT--VLPLGEDPPAITSLCFNHN---GKILAASAVDGMIHMFDMSA 324 (458)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~ 324 (458)
.+++++.+ |.+++|++.+++... ...+.+|...|.+++|+|+ +++|++|+.|+.|++||+++
T Consensus 163 ~l~~~~~~-------------g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 163 TVIIADKF-------------GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp EEEEEETT-------------SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred EEEEEeCC-------------CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999887 599999998876543 1123467788999999999 99999999999999999999
Q ss_pred Cceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC---cc-------------cCCCCCCC
Q 012699 325 GLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS---RF-------------CDPESSKS 387 (458)
Q Consensus 325 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~-------------~~~~~~~~ 387 (458)
++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+.+++......... .+ ........
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 988877 56899999999999 99999999999999999999876544332110 00 00012345
Q ss_pred ceeEEEEccCCCEEEEEe-CCccEEEEEc--cCC---CcccccCCCCCcEEEEEECCCCCeEEEecC------CCcEEEE
Q 012699 388 CRHEMALDVNGRRLLVTS-GSVRAPIYQV--RGH---ASGMRTLPHGAAITTVDWHPTLPMFLTGSA------DHSVQVM 455 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~-~~~~i~i~~~--~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------dg~v~iw 455 (458)
.+..++|+|++++|++++ .++.|++|++ ... .....+..| ..|.+++|+|++.++++++. +..|++|
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEE
Confidence 789999999999999999 8999999999 443 233334456 88999999996544444443 5568888
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
.+
T Consensus 388 ~~ 389 (450)
T 2vdu_B 388 EY 389 (450)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.7e-34 Score=268.04 Aligned_cols=250 Identities=14% Similarity=0.211 Sum_probs=206.2
Q ss_pred ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----------CceeeeccCCCCCCceeeeeecCCCC-eEEEe
Q 012699 186 ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----------KRVVCDLNTTDAFPSVLDLKCSPVEP-IFVSA 254 (458)
Q Consensus 186 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 254 (458)
....|...|.+++|+|.++.+|++++.+|.|++||+.+ ......+..+. ..+.+++|+|++. .++++
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ--KEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS--SCCCCEEECTTSTTEEEEE
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC--CCeEEEEeCCCCCCeEEEE
Confidence 34567889999999965688999999999999999986 44555555444 6899999999998 88888
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCcee-----EEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCC---
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAM-----TVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAG--- 325 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~--- 325 (458)
+.+ |.|++||+..+... ....+..|...|.+++|+| ++.+|++++.||.|++||++++
T Consensus 201 ~~d-------------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 201 SDD-------------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp CTT-------------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred eCC-------------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 887 59999999873321 1122347888899999999 6789999999999999999986
Q ss_pred ceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEE
Q 012699 326 LQITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLV 403 (458)
Q Consensus 326 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~ 403 (458)
+.+..+..|...|++++|+|+++ +|++++.||.|++||+++....... ...+...+.+++|+|+++ +|++
T Consensus 268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~--------~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS--------FESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--------EECCSSCEEEEEECSSCTTEEEE
T ss_pred cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE--------eecCCCCEEEEEECCCCCCEEEE
Confidence 57778889999999999999887 6889999999999999975432221 224677899999999995 6889
Q ss_pred EeCCccEEEEEccCC--------------CcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699 404 TSGSVRAPIYQVRGH--------------ASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~--------------~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~ 458 (458)
++.|+.|++||+... ..+....+|...|++++|+|+++ +|++++.||.|+||+++
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 999999999999873 23334447999999999999999 89999999999999974
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2e-34 Score=265.55 Aligned_cols=285 Identities=16% Similarity=0.174 Sum_probs=224.9
Q ss_pred cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC-CCC
Q 012699 82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS-SGN 160 (458)
Q Consensus 82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~ 160 (458)
...++++++.+|.+++|++...... ......+.+|.+.|++++|+| +++
T Consensus 46 ~~~~~~~~~~~g~i~v~~~~~~~~~------------------------------~~~~~~~~~h~~~V~~~~~~p~~~~ 95 (402)
T 2aq5_A 46 FMALICEASGGGAFLVLPLGKTGRV------------------------------DKNVPLVCGHTAPVLDIAWCPHNDN 95 (402)
T ss_dssp EEEEEBCCSSSCCEEEEETTCCEEC------------------------------CTTCCCBCCCSSCEEEEEECTTCTT
T ss_pred eEEEEEEEcCCCEEEEEECccCCCC------------------------------CCCCceEecCCCCEEEEEeCCCCCC
Confidence 3456667899999999998542200 002345679999999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCCCC-----CccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699 161 NIASASVDGTVRIWTYDSSTPA-----SRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 235 (458)
+|++|+.||+|++||+.++... .......|...|.+++|+|.+..+|++++.||.|++||+++++....+....+
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 175 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence 9999999999999999887431 12234457789999999955457999999999999999999999888842334
Q ss_pred CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-cEEEEEEccCCCEEEEE---
Q 012699 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP-AITSLCFNHNGKILAAS--- 311 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~--- 311 (458)
...+.+++|+|++..+++++.+ |.|++||+++++....+. ..|.. .+.+++|+|++++|++|
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d-------------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRD-------------KRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETT-------------SEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred CCceEEEEECCCCCEEEEEecC-------------CcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccC
Confidence 4789999999999999999988 599999999998887773 23444 48999999999999999
Q ss_pred ecCCeEEEEeCCCCce-eeeee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 312 AVDGMIHMFDMSAGLQ-ITGWP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 312 ~~dg~i~v~d~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
+.|+.|++||+++++. +.... .|...+.+++|+|++++|+ +++.|+.|++||+.+.+....... ...+...
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~------~~~~~~~ 315 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS------MFSSKES 315 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE------EECCSSC
T ss_pred CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec------ccccCCc
Confidence 7899999999998654 33333 5778899999999999986 556799999999998764221111 1124577
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
+.+++|+|++.++++ .++.+++|++.+.
T Consensus 316 v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEeccccccee--cceeEEEEEcCCC
Confidence 999999999998864 5668999999764
No 112
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3.9e-33 Score=259.79 Aligned_cols=286 Identities=14% Similarity=0.103 Sum_probs=228.8
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc---ccccCCCceEEEEEecCCCeEEEEEcCCCcEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN---ATIYCGTEIMSLEWECKSDRLLLIGTADGGIK 217 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 217 (458)
..+..+ ..+.+++|+|++.++++++.|++|++||+.+++..... ....+...+.+++|+ +++.++++++.|+.|+
T Consensus 117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVH 194 (433)
T ss_dssp EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEE
T ss_pred EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEE
Confidence 344444 34568999998778888888999999999887654311 123456789999997 7889999999999999
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI 296 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i 296 (458)
+||+++++....+..+. ..+.+++|+|++..+++++ .+ +.|++||+++++....+.. ...+
T Consensus 195 ~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-------------~~i~~~d~~~~~~~~~~~~---~~~~ 256 (433)
T 3bws_A 195 VFDLKTLAYKATVDLTG--KWSKILLYDPIRDLVYCSNWIS-------------EDISVIDRKTKLEIRKTDK---IGLP 256 (433)
T ss_dssp EEETTTCCEEEEEECSS--SSEEEEEEETTTTEEEEEETTT-------------TEEEEEETTTTEEEEECCC---CSEE
T ss_pred EEECCCceEEEEEcCCC--CCeeEEEEcCCCCEEEEEecCC-------------CcEEEEECCCCcEEEEecC---CCCc
Confidence 99999998888776544 6799999999999886655 44 5999999999888776643 3458
Q ss_pred EEEEEccCCCEEEEEe--------cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCC
Q 012699 297 TSLCFNHNGKILAASA--------VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 297 ~~~~~~~~~~~l~~~~--------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 367 (458)
.+++|+|+++++++++ .||.|++||+++++.+..+ .|...+.+++|+|+++.+ ++++.|+.|++||+.+.
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 9999999999999888 4889999999988877665 456689999999999755 66688999999999875
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC---------------CccEEEEEccCCCcccccCCCCCcEE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG---------------SVRAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---------------~~~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
+..... .+...+..++|+|+|++|++++. ||.|++||+.+.+....+.. ...+.
T Consensus 336 ~~~~~~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~ 404 (433)
T 3bws_A 336 KVQKSI----------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPT 404 (433)
T ss_dssp EEEEEE----------ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEE
T ss_pred cEEEEe----------cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCc
Confidence 443222 13455889999999999998887 46999999988765544443 56799
Q ss_pred EEEECCCCCeEEEec-CCCcEEEEeCC
Q 012699 433 TVDWHPTLPMFLTGS-ADHSVQVMSLS 458 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~-~dg~v~iw~l~ 458 (458)
+++|+|++++|++++ .|+.|++|+++
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 999999999988776 49999999975
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-35 Score=264.91 Aligned_cols=268 Identities=10% Similarity=0.121 Sum_probs=208.0
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---------CC
Q 012699 154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---------AK 224 (458)
Q Consensus 154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~ 224 (458)
.+.+++.+|++|+.||+|++||+.+++...... ...|.++.|+|. +++++.|++|++|+.. ++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~ 114 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT----TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTN 114 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE----EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe----cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCc
Confidence 345678899999999999999999887653222 345677778743 9999999999999766 44
Q ss_pred ceeeeccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
+.+..+.. .+...|.+++++| ++.++++++.| |.|++||+++++...... ..+...+.+++|+
T Consensus 115 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~d-------------g~i~~wd~~~~~~~~~~~-~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 115 KVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNR-------------GTIGFQSYEDDSQYIVHS-AKSDVEYSSGVLH 179 (343)
T ss_dssp CEEEEEEC-CCSSCEEEEECCC---CCEEEEEETT-------------CCEEEEESSSSCEEEEEC-CCSSCCCCEEEEC
T ss_pred ceeEEeec-CCCCCEEEEEcCCCCCCCEEEEEeCC-------------CcEEEEECCCCcEEEEEe-cCCCCceEEEEEC
Confidence 43433332 2235799999999 99999999988 599999999988866553 3455579999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCcee-eeeeC-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQI-TGWPA-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
|++.+|++|+.||.|++||+++++.+ ..+.. |.++|.+++|+|++.+|++++ |+.|++||+++...... +.
T Consensus 180 pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------~~ 252 (343)
T 3lrv_A 180 KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA------YP 252 (343)
T ss_dssp TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS------SC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee------ec
Confidence 99999999999999999999999887 77888 999999999999999999999 45999999997643321 11
Q ss_pred CCCCCCCce--eEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECC---CCCeEEEecCCCcEEE
Q 012699 381 DPESSKSCR--HEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP---TLPMFLTGSADHSVQV 454 (458)
Q Consensus 381 ~~~~~~~~v--~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~dg~v~i 454 (458)
....+...+ .+++|+|+|++|++++. ++.+++|++......... .++..++|.| +.+.|++++.||.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEE
Confidence 111122223 46999999999999998 999999999766443332 5677888988 8888999999998887
Q ss_pred E
Q 012699 455 M 455 (458)
Q Consensus 455 w 455 (458)
+
T Consensus 329 ~ 329 (343)
T 3lrv_A 329 I 329 (343)
T ss_dssp E
T ss_pred E
Confidence 6
No 114
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=270.91 Aligned_cols=250 Identities=11% Similarity=0.050 Sum_probs=198.6
Q ss_pred CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC--ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 190 CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK--RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 190 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
+..+|.+++|+ +++++|++++.|+.|++||+.++ +....+..+ ...|.+++|+|+++++++++.|
T Consensus 10 ~~~~v~~~~~s-~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d---------- 76 (377)
T 3dwl_C 10 LPKPSYEHAFN-SQRTEFVTTTATNQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQD---------- 76 (377)
T ss_dssp CSSCCSCCEEC-SSSSEEECCCSSSCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETT----------
T ss_pred CCCcEEEEEEC-CCCCEEEEecCCCEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCC----------
Confidence 45689999999 68889999999999999999988 555555554 4789999999999999999988
Q ss_pred ccceeEEEEECCCCc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc---eeeeeeC-CCCCeEEEE
Q 012699 268 WGFASLTVWNMKTWK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL---QITGWPA-HDSAISSIL 342 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~-~~~~v~~~~ 342 (458)
|.|++||+.+++ ......+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++
T Consensus 77 ---~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~ 153 (377)
T 3dwl_C 77 ---RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLD 153 (377)
T ss_dssp ---SSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred ---CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEE
Confidence 599999999877 33344456788899999999999999999999999999999876 4677777 999999999
Q ss_pred EcCCCCEEEEecCCCeEEEEeccCCCeeEEee---------cCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEE
Q 012699 343 FGPDETSIFSLGSDGKIIEWSLQNQGQVLWTR---------NCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIY 413 (458)
Q Consensus 343 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~ 413 (458)
|+|++++|++++.|+.|++||+.......... ........ .+...+.+++|+|++++|++++.|+.|++|
T Consensus 154 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw 232 (377)
T 3dwl_C 154 WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232 (377)
T ss_dssp ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999996432110000 00011111 677889999999999999999999999999
Q ss_pred EccCCCc----ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 414 QVRGHAS----GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 414 ~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|+.+... ...+.+|...|.+++|+|++++|++++.|+.+ +|+.
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~ 279 (377)
T 3dwl_C 233 YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQG 279 (377)
T ss_dssp EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECC
T ss_pred ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEe
Confidence 9999877 66677899999999999999999999877666 6654
No 115
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=252.51 Aligned_cols=282 Identities=13% Similarity=0.184 Sum_probs=223.5
Q ss_pred eeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCC
Q 012699 27 IKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVG 106 (458)
Q Consensus 27 i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 106 (458)
.++++| |+++ +||+|. |++++|||.++++....+.. ..+......+.++++++++++|+.|+++++|++....
T Consensus 28 ~~~l~W-S~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~--~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-- 100 (318)
T 4ggc_A 28 LNLVDW-SSGN-VLAVAL-DNSVYLWSASSGDILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-- 100 (318)
T ss_dssp CBCEEE-CTTS-EEEEEE-TTEEEEEETTTCCEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--
T ss_pred ceEEEE-CCCC-EEEEEe-CCEEEEEECCCCCEEEEEEe--cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce--
Confidence 478999 8887 677665 99999999998865533221 1112234457788889999999999999999986533
Q ss_pred cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc
Q 012699 107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA 186 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 186 (458)
.++.+.+|...+.++.+ ++..+++++.++.+++|+....... ...
T Consensus 101 --------------------------------~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~-~~~ 145 (318)
T 4ggc_A 101 --------------------------------RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH-VAT 145 (318)
T ss_dssp --------------------------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE-EEE
T ss_pred --------------------------------eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCcee-EEE
Confidence 56677899999887666 4569999999999999998766543 223
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec--cCCCCCCceeeeeecCCCCeEE---EeecccCCC
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL--NTTDAFPSVLDLKCSPVEPIFV---SAAASRRYG 261 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~ 261 (458)
...+...+..+.|. +++.++++++.||.|++||+++++..... ....+...+..+.+.|.+..++ +++.+
T Consensus 146 ~~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 220 (318)
T 4ggc_A 146 LSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD---- 220 (318)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT----
T ss_pred EcCccCceEEEEEc-CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC----
Confidence 44567889999998 77889999999999999999987643221 1223336789999999877544 23333
Q ss_pred CcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe--cCCeEEEEeCCCCceeeeeeCCCCCeE
Q 012699 262 SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA--VDGMIHMFDMSAGLQITGWPAHDSAIS 339 (458)
Q Consensus 262 ~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~v~ 339 (458)
+.|++||.+......... +...+..+.|+|+++.+++++ .|+.|++||+++++++..+.+|.+.|+
T Consensus 221 ---------~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 221 ---------RHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp ---------CEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ---------CEEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 599999999888776654 445699999999999887765 799999999999999999999999999
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 340 SILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
+++|+|++++|++++.||+|++||+.+.
T Consensus 289 ~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 289 SLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999754
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.9e-33 Score=253.88 Aligned_cols=291 Identities=11% Similarity=0.118 Sum_probs=208.9
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
.+..+..|...|+|++| ++||++|++|+.++ +++|+.+.....
T Consensus 11 ~~~~~~~h~~~V~~v~f-s~dg~~la~g~~~~-~~iw~~~~~~~~----------------------------------- 53 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEF-NQDQSCLILSTLKS-FEIYNVHPVAHI----------------------------------- 53 (355)
T ss_dssp --------CCCCCEEEE-CTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------------
T ss_pred CccccccCCCceEEEEE-CCCCCEEEEEcCCE-EEEEecCCccee-----------------------------------
Confidence 35567899999999999 99999999998775 679986543100
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE-EEEeCCCcEEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw 174 (458)
.. .+...+..+++.++++.+ ++++.|++|++|
T Consensus 54 ---------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 54 ---------------------------------------------MS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------------------------------------------EE--EECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred ---------------------------------------------ee--eecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 00 011136677888888777 567788999999
Q ss_pred ecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccCCCCCCceeeeeecCCCCeEEE
Q 012699 175 TYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNTTDAFPSVLDLKCSPVEPIFVS 253 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 253 (458)
|+.+++... ...+..+|.++.|+ ++ .++++ .++.|++||+.++ +.+..+.. +...+++++ ..++.
T Consensus 87 d~~~~~~~~---~~~~~~~v~~v~~~-~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~-----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 87 DDVKKQDVS---RIKVDAPVKDLFLS-RE--FIVVS-YGDVISVFKFGNPWKRITDDIR-----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp ETTTTEEEE---EEECSSCEEEEEEC-SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE-----EEEEEEEET--TEEEE
T ss_pred ECCCCcEEE---EEECCCceEEEEEc-CC--EEEEE-EcCEEEEEECCCCceeeEEecc-----CCceEEEEc--cEEEE
Confidence 998887653 33466789999998 33 33433 4789999999988 66555443 233445555 55555
Q ss_pred e--ecccCCCCcceeeccceeEEEEECCCCce----------------eEEeecCCCCCcEEEEEEccCCCEEEEEecCC
Q 012699 254 A--AASRRYGSSNIYSWGFASLTVWNMKTWKA----------------MTVLPLGEDPPAITSLCFNHNGKILAASAVDG 315 (458)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~g~i~i~d~~~~~~----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 315 (458)
+ +.+ |.|++||+++++. ... +.+|...|.+++|+|++++|++|+.||
T Consensus 153 ~sg~~~-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~--~~~h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 153 SNEFNL-------------GQIHITKLQSSGSATTQDQGVQQKAILGKGVL--IKAHTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EESSCT-------------TCEEEEECCC------------------CCEE--ECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred eCCCcC-------------cEEEEEECCCCCccccccccccccccCcccEE--EEccCCceEEEEECCCCCEEEEEeCCC
Confidence 3 444 6999999998651 333 457889999999999999999999999
Q ss_pred e-EEEEeCCCCceeeeee-C-CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCC----c----------
Q 012699 316 M-IHMFDMSAGLQITGWP-A-HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCS----R---------- 378 (458)
Q Consensus 316 ~-i~v~d~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~---------- 378 (458)
+ |++||+++++++..+. + |...|.+++|+|++++|++++.|++|++||++............ .
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 8 9999999999999998 5 99999999999999999999999999999998653211110000 0
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
.............++|+|++++|++++.||.+++|++....
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00011122234679999999999999999999999987653
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=257.37 Aligned_cols=252 Identities=11% Similarity=0.106 Sum_probs=198.3
Q ss_pred eeccCCCCeEEEEeCCCCCEE-EEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNI-ASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKA 218 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 218 (458)
...+|.+.|++++|+|++++| ++++.||+|++||+. ++..........+...|.+++|+ +++.+|++++.+|.+++
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDTTVIIADKFGDVYS 175 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCCEEEEEeCCCcEEE
Confidence 345788999999999999996 899999999999998 66554332223566889999999 68889999999999999
Q ss_pred EEcCCCceee----eccCCCCCCceeeeeecCC---CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 219 WNVDAKRVVC----DLNTTDAFPSVLDLKCSPV---EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 219 wd~~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
|++.+++... .+..+ ...|.+++|+|+ +.++++++.+ +.|++||+++++....+ ..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~d-------------~~i~vwd~~~~~~~~~~-~~~ 239 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGH--VSMLTDVHLIKDSDGHQFIITSDRD-------------EHIKISHYPQCFIVDKW-LFG 239 (450)
T ss_dssp EETTSCCCSSCCCCCSEEC--SSCEEEEEEEECTTSCEEEEEEETT-------------SCEEEEEESCTTCEEEE-CCC
T ss_pred EecCCcccccccceeeecc--cCceEEEEEcCCCCCCcEEEEEcCC-------------CcEEEEECCCCceeeee-ecC
Confidence 9998877543 34333 378999999999 8899999988 59999999998877764 346
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC-------------------------CCCCeEEEEEcCC
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA-------------------------HDSAISSILFGPD 346 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-------------------------~~~~v~~~~~~~~ 346 (458)
|...|.+++|+ ++++|++++.|+.|++||+++++.+..+.. ....|.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 88899999999 999999999999999999999998887763 2357899999999
Q ss_pred CCEEEEec-CCCeEEEEec--cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC------CccEEEEEccC
Q 012699 347 ETSIFSLG-SDGKIIEWSL--QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG------SVRAPIYQVRG 417 (458)
Q Consensus 347 ~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------~~~i~i~~~~~ 417 (458)
+++|++++ .|+.|++|++ ........... ...+ ..+.+++|+|++.++++++. +..|.+|.+..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~------~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQI------ITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEE------EECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccE------eccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999998 8999999999 44322211111 1122 66999999996544444443 44578887754
Q ss_pred C
Q 012699 418 H 418 (458)
Q Consensus 418 ~ 418 (458)
.
T Consensus 392 ~ 392 (450)
T 2vdu_B 392 N 392 (450)
T ss_dssp T
T ss_pred C
Confidence 3
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.2e-31 Score=246.14 Aligned_cols=307 Identities=13% Similarity=0.100 Sum_probs=232.2
Q ss_pred ceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEE
Q 012699 83 SRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNI 162 (458)
Q Consensus 83 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 162 (458)
..++++++.|+.+++|++.... .+..+.+|. .+.+++|+|++++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~----------------------------------~~~~~~~~~-~~~~~~~s~dg~~l 46 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNK----------------------------------VTATIPVGS-NPMGAVISPDGTKV 46 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTE----------------------------------EEEEEECSS-SEEEEEECTTSSEE
T ss_pred CEEEEEcCCCCEEEEEECCCCe----------------------------------EEEEeecCC-CcceEEECCCCCEE
Confidence 3567888999999999975532 444555564 48999999999987
Q ss_pred -EEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceee
Q 012699 163 -ASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLD 241 (458)
Q Consensus 163 -~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~ 241 (458)
++++.|++|++||+.+++... ....+..+.+++|+|.+..+++++..++.|++||+.+++....+..+ ..+.+
T Consensus 47 ~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~ 120 (391)
T 1l0q_A 47 YVANAHSNDVSIIDTATNNVIA---TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG---KSPLG 120 (391)
T ss_dssp EEEEGGGTEEEEEETTTTEEEE---EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEE
T ss_pred EEECCCCCeEEEEECCCCeEEE---EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC---CCcce
Confidence 677799999999998876543 33445589999999544444466667899999999999988777654 46899
Q ss_pred eeecCCCCeE-EEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecCCeEEE
Q 012699 242 LKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIHM 319 (458)
Q Consensus 242 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v 319 (458)
++|+|+++.+ ++++.+ +.|++||+.+++....+... ..+.+++|+|+++++ ++++.++.|++
T Consensus 121 ~~~s~dg~~l~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~ 184 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGD-------------KTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISV 184 (391)
T ss_dssp EEECTTSSEEEEEETTT-------------TEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCCC-------------CEEEEEECCCCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 9999999977 455545 59999999999888877632 457999999999887 56778899999
Q ss_pred EeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 320 FDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 320 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||+.+.+...... ....+..++|+|
T Consensus 185 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~~~~~~~s~ 253 (391)
T 1l0q_A 185 IDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----------VGPDPAGIAVTP 253 (391)
T ss_dssp EETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE----------CCSSEEEEEECT
T ss_pred EECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe----------cCCCccEEEEcc
Confidence 9999988877766 456789999999999999887 68999999998765433221 122478899999
Q ss_pred CCCEEE-EEeCCccEEEEEccCCCcccccCCCCCcEE---EEEECC------------C--------C--CeEEEecCCC
Q 012699 397 NGRRLL-VTSGSVRAPIYQVRGHASGMRTLPHGAAIT---TVDWHP------------T--------L--PMFLTGSADH 450 (458)
Q Consensus 397 ~g~~l~-~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~---~~~~~~------------~--------~--~~l~s~~~dg 450 (458)
+|++|+ +++.++.|++||+.+++....+..|..+.. .+.+.| + . ..+...+.|.
T Consensus 254 dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~ 333 (391)
T 1l0q_A 254 DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDA 333 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSC
T ss_pred CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCc
Confidence 999884 557799999999988765544443333211 122222 1 1 2466677788
Q ss_pred cEEEEeC
Q 012699 451 SVQVMSL 457 (458)
Q Consensus 451 ~v~iw~l 457 (458)
.+++|++
T Consensus 334 ~~~~W~~ 340 (391)
T 1l0q_A 334 TEWKWDF 340 (391)
T ss_dssp SEEEEEC
T ss_pred eEEEEEC
Confidence 9999997
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-33 Score=274.24 Aligned_cols=251 Identities=13% Similarity=0.186 Sum_probs=210.3
Q ss_pred cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--CceeeeccCCCCCCceeeeeecCC--CCeEEEeecccCCCC
Q 012699 187 TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA--KRVVCDLNTTDAFPSVLDLKCSPV--EPIFVSAAASRRYGS 262 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~ 262 (458)
...|...|.+++|+ +++++|++|+.||.|++||+.+ ++....+..+ ...|.+++|+|+ +..+++++.|
T Consensus 5 l~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~D----- 76 (753)
T 3jro_A 5 ANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD----- 76 (753)
T ss_dssp ---CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETT-----
T ss_pred cccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCC-----
Confidence 34678899999999 6788999999999999999984 4555555544 478999999988 8999999988
Q ss_pred cceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCCeEEEEeCCCC--ceeeeeeCCCCCe
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDGMIHMFDMSAG--LQITGWPAHDSAI 338 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v 338 (458)
|.|++||+.+++.........|...|.+++|+|+ ++++++|+.||.|++||++++ .....+.+|...|
T Consensus 77 --------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 77 --------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp --------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred --------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence 5999999999875555555678899999999999 999999999999999999876 3455667899999
Q ss_pred EEEEEcC-------------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC---CCEEE
Q 012699 339 SSILFGP-------------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN---GRRLL 402 (458)
Q Consensus 339 ~~~~~~~-------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~ 402 (458)
.+++|+| ++++|++++.||.|++||+++........ .....|...|.+++|+|+ +++|+
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-----STLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE-----EEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee-----eeecCCCCcEEEEEeccCCCCCCEEE
Confidence 9999999 58999999999999999998764332111 112357788999999999 99999
Q ss_pred EEeCCccEEEEEccCCC-----cccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 403 VTSGSVRAPIYQVRGHA-----SGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 403 ~~~~~~~i~i~~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+++.||.|++||+.+.. ......+|...|++++|+|++++|++++.||.|++|+++
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 99999999999998864 223334688999999999999999999999999999974
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3e-32 Score=252.93 Aligned_cols=261 Identities=18% Similarity=0.281 Sum_probs=206.2
Q ss_pred eeeccCCCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCC--------CCCCccccccCCCceEEEEEecCCCeEEEEEc
Q 012699 141 ETFLGHTSPISCCRFSSS-GNNIASASVDGTVRIWTYDSS--------TPASRNATIYCGTEIMSLEWECKSDRLLLIGT 211 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 211 (458)
....+|.+.|++++|+|+ +.+|++++.||.|++|++... ..........|...+.+++|+|.+..+|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 345579999999999997 679999999999999999762 12222334457788999999955555999999
Q ss_pred CCCcEEEEEcCCCce-------eeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCC--
Q 012699 212 ADGGIKAWNVDAKRV-------VCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-- 281 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-- 281 (458)
.||.|++||+.++.. ...+. .+...|.+++|+| ++..+++++.+ |.|++||++++
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~l~s~~~d-------------g~i~i~d~~~~~~ 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHESLFGSVADD-------------QKLMIWDTRNNNT 266 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSCTTEEEEEETT-------------SEEEEEETTCSCS
T ss_pred CCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCCCCEEEEEeCC-------------CeEEEEECCCCCC
Confidence 999999999987432 12222 3447899999999 66788888877 59999999987
Q ss_pred -ceeEEeecCCCCCcEEEEEEccCCC-EEEEEecCCeEEEEeCCC-CceeeeeeCCCCCeEEEEEcCCCC-EEEEecCCC
Q 012699 282 -KAMTVLPLGEDPPAITSLCFNHNGK-ILAASAVDGMIHMFDMSA-GLQITGWPAHDSAISSILFGPDET-SIFSLGSDG 357 (458)
Q Consensus 282 -~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 357 (458)
+....+. .|...|++++|+|++. +|++|+.||.|++||+++ ..++..+..|...|.+++|+|+++ +|++++.|+
T Consensus 267 ~~~~~~~~--~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~ 344 (430)
T 2xyi_A 267 SKPSHTVD--AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344 (430)
T ss_dssp SSCSEEEE--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CcceeEee--cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC
Confidence 3455543 6778899999999887 688999999999999998 567888999999999999999985 699999999
Q ss_pred eEEEEeccCCCeeEEe-----ecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccCC
Q 012699 358 KIIEWSLQNQGQVLWT-----RNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~~ 418 (458)
.|++||+......... ...........+...|..++|+|+++ +|++++.|+.|++|++...
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 9999999874321100 00011222345777899999999999 8999999999999999753
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=3e-31 Score=247.07 Aligned_cols=289 Identities=11% Similarity=0.085 Sum_probs=223.1
Q ss_pred eeeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEe
Q 012699 76 ASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRF 155 (458)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 155 (458)
.+.+++++.++++++.++.+++|++..... . .......+.+|.+.|.+++|
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~-----~------------------------~~~~~~~~~~~~~~v~~~~~ 177 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQT-----V------------------------RLSPPEKYKKKLGFVETISI 177 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCE-----E------------------------EECCCHHHHTTCCEEEEEEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeE-----e------------------------eecCcccccccCCceeEEEE
Confidence 355555678888888899999999754220 0 00011245689999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC
Q 012699 156 SSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA 235 (458)
Q Consensus 156 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 235 (458)
+|+++++++++.|+.|++||+.+++... ....+...+.+++|+|.+..++++++.++.|++||+++++....+...
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-- 253 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKA--TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-- 253 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEE--EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEE--EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--
Confidence 9999999999999999999998876543 223466789999999544444566778999999999999888777654
Q ss_pred CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecC
Q 012699 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVD 314 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d 314 (458)
..+..++++|+++.+++++...... ...+|.|++||+.+++....+. +...+.+++|+|+++.+ ++++.+
T Consensus 254 -~~~~~~~~~~~g~~l~~~~~~~~~~-----~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~ 324 (433)
T 3bws_A 254 -GLPRGLLLSKDGKELYIAQFSASNQ-----ESGGGRLGIYSMDKEKLIDTIG---PPGNKRHIVSGNTENKIYVSDMCC 324 (433)
T ss_dssp -SEEEEEEECTTSSEEEEEEEESCTT-----CSCCEEEEEEETTTTEEEEEEE---EEECEEEEEECSSTTEEEEEETTT
T ss_pred -CCceEEEEcCCCCEEEEEECCCCcc-----ccCCCeEEEEECCCCcEEeecc---CCCCcceEEECCCCCEEEEEecCC
Confidence 4689999999999988887532100 0123799999999988777663 23468899999999755 566889
Q ss_pred CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---------------CCeEEEEeccCCCeeEEeecCCcc
Q 012699 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---------------DGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
+.|++||+.+++.+..+. +...+.+++|+|+++++++++. ||.|++||+.+.+......
T Consensus 325 ~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----- 398 (433)
T 3bws_A 325 SKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----- 398 (433)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-----
T ss_pred CEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-----
Confidence 999999999988887776 6778999999999998888776 5799999998765433221
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccC
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRG 417 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~ 417 (458)
....+..++|+|+|++|++++. ++.|++|++++
T Consensus 399 -----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 -----AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp -----CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred -----CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 1345899999999999998875 99999999864
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3.5e-31 Score=243.12 Aligned_cols=266 Identities=12% Similarity=0.099 Sum_probs=215.3
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCce
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSV 239 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v 239 (458)
.++++++.|++|++||+.+++... ....+..+.+++|+|.+..++++++.|+.|++||+.+++....+..+. .+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~---~v 76 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTA---TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS---SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEE---EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS---SE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEE---EeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC---Cc
Confidence 367889999999999998876543 334556789999994444445788899999999999999888776653 79
Q ss_pred eeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE-EEEecCCeEE
Q 012699 240 LDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIH 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~ 318 (458)
.+++|+|+++.++.++.+. +.|++||+.+++....+.. ...+.+++|+|++++| ++++.++.|+
T Consensus 77 ~~~~~spdg~~l~~~~~~~------------~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMAS------------STLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVS 141 (391)
T ss_dssp EEEEECTTSSEEEEEETTT------------TEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred cceEECCCCCEEEEEECCC------------CEEEEEECCCCeEEEEEeC---CCCcceEEECCCCCEEEEEeCCCCEEE
Confidence 9999999999887665432 5999999999988877753 2468999999999977 6777899999
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397 (458)
Q Consensus 319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 397 (458)
+||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++....... .+...+..++|+|+
T Consensus 142 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~ 210 (391)
T 1l0q_A 142 VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV----------KVEAAPSGIAVNPE 210 (391)
T ss_dssp EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE----------ECSSEEEEEEECTT
T ss_pred EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE----------ecCCCccceEECCC
Confidence 9999999988888765 456999999999887 57788999999999876443322 13446889999999
Q ss_pred CCEEEEEe---CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeE-EEecCCCcEEEEeCC
Q 012699 398 GRRLLVTS---GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMF-LTGSADHSVQVMSLS 458 (458)
Q Consensus 398 g~~l~~~~---~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~dg~v~iw~l~ 458 (458)
|++|++++ .++.|++||+.+.+....+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence 99999988 68999999998876555554544 57899999999976 677899999999974
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-32 Score=244.56 Aligned_cols=271 Identities=10% Similarity=0.083 Sum_probs=205.9
Q ss_pred eeCCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC
Q 012699 77 SSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS 156 (458)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 156 (458)
.....++.++++|+.|+++++|++.... .+..+. ...|.++.|+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~----------------------------------~~~~~~--~~~v~~~~~~ 85 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSK----------------------------------TITTIT--TPNPRTGGEH 85 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSS----------------------------------CEEEEE--EECCCTTCCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCc----------------------------------EEEEEe--cCCceeeeeC
Confidence 3444578899999999999999986532 111121 3567778888
Q ss_pred CCCCEEEEEeCCCcEEEEecCC---------CCCCCccccccCCCceEEEEEecC--CCeEEEEEcCCCcEEEEEcCCCc
Q 012699 157 SSGNNIASASVDGTVRIWTYDS---------STPASRNATIYCGTEIMSLEWECK--SDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
|+ +++++.|++|++|+... .+.. ......+..+|.+++|+ + +++++++++.||.|++||+++++
T Consensus 86 ~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~ 160 (343)
T 3lrv_A 86 PA---IISRGPCNRLLLLYPGNQITILDSKTNKVL-REIEVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDS 160 (343)
T ss_dssp CS---EEEECSTTEEEEEETTTEEEEEETTTCCEE-EEEECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSC
T ss_pred Cc---eEEecCCCeEEEEEccCceEEeecCCccee-EEeecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCc
Confidence 87 99999999999997653 2211 11223345789999999 5 78899999999999999999998
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee-EEeecCCCCCcEEEEEEccC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM-TVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~ 304 (458)
.......+. ...+.+++|+|++.++++++.+ |.|++||+++++.. ..+.. .|...|.+++|+|+
T Consensus 161 ~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~d-------------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 161 QYIVHSAKS-DVEYSSGVLHKDSLLLALYSPD-------------GILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADN 225 (343)
T ss_dssp EEEEECCCS-SCCCCEEEECTTSCEEEEECTT-------------SCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTT
T ss_pred EEEEEecCC-CCceEEEEECCCCCEEEEEcCC-------------CEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCC
Confidence 866554332 2469999999999999999988 59999999998877 55542 37889999999999
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeeeC---CCCCeE--EEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCc
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWPA---HDSAIS--SILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|++++|++++. |+.+++|++.+.......
T Consensus 226 g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----- 299 (343)
T 3lrv_A 226 GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----- 299 (343)
T ss_dssp SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----
T ss_pred CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----
Confidence 99999999 55999999999877665543 434444 6999999999999988 999999999765432211
Q ss_pred ccCCCCCCCceeEEEEcc---CCCEEEEEeCCccEEEEEccC
Q 012699 379 FCDPESSKSCRHEMALDV---NGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~~~i~i~~~~~ 417 (458)
..+..++|+| +++.+++++.++.+.++-...
T Consensus 300 --------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 300 --------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --------EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred --------cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 3466788888 889999999999888876543
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.1e-31 Score=230.98 Aligned_cols=254 Identities=15% Similarity=0.074 Sum_probs=183.1
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCC----CeEEEEEcCCC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKS----DRLLLIGTADG 214 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg 214 (458)
.++++.+|..+|..+.+.||..-|++..- +. .+...|..++++ ++ ++.+++++.+
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~--------~~~~~v~sla~s-pd~~~~~~~l~s~g~~- 136 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------GN--------LEIREIRALFCS-SDDESEKQVLLKSGNI- 136 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEEE-----------CS--------SSEEEEEEECC-------CCEEEEEEEEE-
T ss_pred eeEEEeccCceeEEEEEcCcccceeeeee-----------cc--------ccccceEEEEEC-CCccccccEEEeCCCe-
Confidence 78889999999999999998654544321 11 123568899999 66 7888887754
Q ss_pred cEEEEEcCCCceeeec-cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEeecCCC
Q 012699 215 GIKAWNVDAKRVVCDL-NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLPLGED 292 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~~~~~ 292 (458)
+++|++.+++.+... ..+ + +.|++|++ .+++....+. .|
T Consensus 137 -~~v~~l~~g~lv~ss~~g~-----------------------d-------------~~V~~~~~s~dG~~~~s~~--~~ 177 (356)
T 2w18_A 137 -KAVLGLTKRRLVSSSGTLS-----------------------D-------------QQVEVMTFAEDGGGKENQF--LM 177 (356)
T ss_dssp -EEEEEETTTEEEEEESSST-----------------------T-------------CEEEEEEECTTSCEEEEEE--EC
T ss_pred -EEEEecCCCcEEEecccCC-----------------------C-------------CcEEEEEECCCCceeeeec--cC
Confidence 788877655544431 111 2 37777777 3356555554 45
Q ss_pred CCcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC---CeEEEEEcCCCCEE------------EEec
Q 012699 293 PPAITSLCFNH---NGKILAASAVDGMIHMFDMSAGLQITGWPAHDS---AISSILFGPDETSI------------FSLG 354 (458)
Q Consensus 293 ~~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l------------~~~~ 354 (458)
...+..++|+| ++.+|++|+.|++|+|||++++++++++.+|.. .+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 56678888888 779999999999999999999999999987543 67788999999876 5678
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-E
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-T 433 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~ 433 (458)
.|++|++||..+++....... .+ +.++...+. ..+.++.++++++.|++|+|||+.+++....+.+|...+. .
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~--~~--p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLY--CL--PPGQAGRFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEE--CC--CTTCCCCEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred CCcEEEEEECCCCEEEEEEEe--ec--cCCCcceeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 899999999987654332110 00 223333333 3344488999999999999999999988888888887655 5
Q ss_pred EEECCCCCeEEEecCCCcEEEEeCC
Q 012699 434 VDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 434 ~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++|+|||++|++|+.|++|||||+.
T Consensus 332 vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 332 VKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp EEECSSSSEEEEECTTSCEEEEEEC
T ss_pred EEECCCCCEEEEEECCCcEEEecCC
Confidence 8999999999999999999999974
No 125
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.5e-31 Score=272.96 Aligned_cols=393 Identities=10% Similarity=0.074 Sum_probs=276.6
Q ss_pred hhccccCCCcceeeeeeccCCCceeeeeecC------cceEEeccccccccc------cc-------eeeeeccCCceee
Q 012699 16 QLSRLKNNSETIKYANIGQTKNSTLASGVNE------ESLLLSTNSSEACAT------TA-------THMGSAEMGQTWA 76 (458)
Q Consensus 16 ~~~~l~~h~~~i~~~~~~s~~~~~l~s~~~d------~~~~iw~~~~~~~~~------~~-------~~~~~~~~~~~~~ 76 (458)
..++|.+|...+.+++| ||||++||+++.+ ..+.+|+...+.... .. ...+|+|+
T Consensus 44 ~~~~lt~~~~~v~~~~~-SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpD----- 117 (1045)
T 1k32_A 44 STRKIVSNLGVINNARF-FPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD----- 117 (1045)
T ss_dssp CEEEEECSSSEEEEEEE-CTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT-----
T ss_pred cEEEeeeCCCcccCeEE-CCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCCC-----
Confidence 35678899999999999 9999999988654 478999988765331 11 33445555
Q ss_pred eeCCccceeEeeccCC----CcccccccccccCCcccce-eeeccCCCCcCCCcceeccCC------------Ceeee--
Q 012699 77 SSRPALSRFATNMSGN----DSISPSKLEFEDVGAGDII-QMFNDGLYTENGRDAQGEEDF------------PEVKV-- 137 (458)
Q Consensus 77 ~~~~~~~~~l~~~~~~----~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~------------~~~~~-- 137 (458)
++++++++.+ +...+|.+........... .......|+| | .++++... ....+
T Consensus 118 ------g~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 118 ------GNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp ------CCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ------CEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEE
Confidence 4444444433 3334444332111111000 0112334777 6 55553211 11111
Q ss_pred ----eeeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC
Q 012699 138 ----DFLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD 213 (458)
Q Consensus 138 ----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 213 (458)
.....+.+|...+.++.|+++ .++++++.|+++++|.+....... ........+...+|+ ++++.++.+ .+
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~--~~l~~~~~~~~~~~S-pDG~~la~~-~~ 264 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL--RKHTSFTDYYPRHLN-TDGRRILFS-KG 264 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC--EECCCCCSSCEEEEE-ESSSCEEEE-ET
T ss_pred ECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc--eEecCCCCcceeeEc-CCCCEEEEE-eC
Confidence 123456899999999999998 667788889999999876422111 112223346677999 567767776 48
Q ss_pred CcEEEEEcCCCceeeeccCCC---------CCCceeeeeec-CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce
Q 012699 214 GGIKAWNVDAKRVVCDLNTTD---------AFPSVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~---------~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~ 283 (458)
+.|.+||+...+.. .+.... +...+..++|+ |+++.++++.. +.+.+|++..++.
T Consensus 265 ~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~--------------~~i~~~~~~~~~~ 329 (1045)
T 1k32_A 265 GSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR--------------GQAFIQDVSGTYV 329 (1045)
T ss_dssp TEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET--------------TEEEEECTTSSBE
T ss_pred CEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEc--------------CEEEEEcCCCCce
Confidence 89999999554433 443321 11358899999 99999988873 4999999988765
Q ss_pred eEEeecCCCCC-cEEEEEEccCCCEEEEEecCCeEE-EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 284 MTVLPLGEDPP-AITSLCFNHNGKILAASAVDGMIH-MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 284 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~-v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
.. +..+.. .+..++|+ +|+.|++++.++.+. +||+.+++... +..|...+..++|+|||++|++++.++.|++
T Consensus 330 ~~---~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~ 404 (1045)
T 1k32_A 330 LK---VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMT 404 (1045)
T ss_dssp EE---CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EE---ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEE
Confidence 44 334556 79999999 999999998888898 99998766543 4478889999999999999999999999999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC----------ccEEEEEccCCCcccccCCCCCcE
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----------VRAPIYQVRGHASGMRTLPHGAAI 431 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----------~~i~i~~~~~~~~~~~~~~h~~~v 431 (458)
||+.++....... .+...+..++|||||++|++++.+ +.|++||+.+++ ...+..|...+
T Consensus 405 ~d~~tg~~~~~~~---------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 405 VDLETGKPTVIER---------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp EETTTCCEEEEEE---------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred EECCCCceEEecc---------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 9998765433211 245567889999999999988764 489999998875 56666888889
Q ss_pred EEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 432 TTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+++|+|||+.|++++.++..++|+.
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEECS
T ss_pred CCceEcCCCCEEEEEecccCCcCcch
Confidence 99999999999999998888777763
No 126
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.4e-30 Score=265.79 Aligned_cols=408 Identities=12% Similarity=0.037 Sum_probs=287.9
Q ss_pred hhccccCCCcce-------eeeeeccCCCceeeeeecC------cceEEecccccccc----ccceeeeeccCCceeeee
Q 012699 16 QLSRLKNNSETI-------KYANIGQTKNSTLASGVNE------ESLLLSTNSSEACA----TTATHMGSAEMGQTWASS 78 (458)
Q Consensus 16 ~~~~l~~h~~~i-------~~~~~~s~~~~~l~s~~~d------~~~~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~ 78 (458)
..++|..|...+ ..++| +|||+++++++.+ ..+.+|+...+... .......|+| + .++..
T Consensus 91 ~~~~lt~~~~~~~~~~~~~~~~~~-SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l~~~ 167 (1045)
T 1k32_A 91 EIKRITYFSGKSTGRRMFTDVAGF-DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RRVIG 167 (1045)
T ss_dssp EEEECCCCCEEEETTEECSEEEEE-CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EEEEE
T ss_pred CeEEcccCCCcccccccccccccC-CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EEEEe
Confidence 357788999988 99999 9999988888755 34666776655432 2223344555 4 33321
Q ss_pred -------------------------------------------CCccceeEeeccCCCcccccccccccCCcccc--eee
Q 012699 79 -------------------------------------------RPALSRFATNMSGNDSISPSKLEFEDVGAGDI--IQM 113 (458)
Q Consensus 79 -------------------------------------------~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~ 113 (458)
++++ .++++++.++...+|.+.......... ...
T Consensus 168 ~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 246 (1045)
T 1k32_A 168 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTD 246 (1045)
T ss_dssp ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCS
T ss_pred ccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCC
Confidence 1122 566677788999999876432111111 111
Q ss_pred eccCCCCcCCCcceeccCCCeeee-----eeeeeecc-----------CCCCeEEEEeC-CCCCEEEEEeCCCcEEEEec
Q 012699 114 FNDGLYTENGRDAQGEEDFPEVKV-----DFLETFLG-----------HTSPISCCRFS-SSGNNIASASVDGTVRIWTY 176 (458)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~-----------h~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~ 176 (458)
.....|+|+|+.++.... ..+.+ ..+..+.+ |...+.+++|+ |||++|++++ ++.+.+|++
T Consensus 247 ~~~~~~SpDG~~la~~~~-~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSKG-GSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp SCEEEEEESSSCEEEEET-TEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred cceeeEcCCCCEEEEEeC-CEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 234478999998887643 33322 11223333 44579999999 9999999887 789999998
Q ss_pred CCCCCCCccccccCCC-ceEEEEEecCCCeEEEEEcCCCcEE-EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEe
Q 012699 177 DSSTPASRNATIYCGT-EIMSLEWECKSDRLLLIGTADGGIK-AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSA 254 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 254 (458)
.++.... ...+.. .+..++|+ +++.+++++.++.+. +||+.+++.... . .+...+..++|+|+++.++++
T Consensus 325 ~~~~~~~---~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l-~--~~~~~~~~~~~SpDG~~la~~ 396 (1045)
T 1k32_A 325 SGTYVLK---VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKF-E--ENLGNVFAMGVDRNGKFAVVA 396 (1045)
T ss_dssp TSSBEEE---CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEEC-C--CCCCSEEEEEECTTSSEEEEE
T ss_pred CCCceEE---ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEe-c--CCccceeeeEECCCCCEEEEE
Confidence 7765321 233445 78899998 677788888788888 999988765433 3 233678999999999999988
Q ss_pred ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC----------eEEEEeCCC
Q 012699 255 AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG----------MIHMFDMSA 324 (458)
Q Consensus 255 ~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------~i~v~d~~~ 324 (458)
+.+ +.|++||+.+++...... .+...+.+++|+|||++|++++.++ .|++||+.+
T Consensus 397 ~~~-------------~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 397 NDR-------------FEIMTVDLETGKPTVIER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp ETT-------------SEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCC-------------CeEEEEECCCCceEEecc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 877 499999999988776654 4666789999999999999887654 899999998
Q ss_pred CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee------EEee--c---------------------
Q 012699 325 GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV------LWTR--N--------------------- 375 (458)
Q Consensus 325 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~--~--------------------- 375 (458)
++ ...+..|...+..++|+|+|++|++++.++...+|+....... .... .
T Consensus 462 g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1045)
T 1k32_A 462 RK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540 (1045)
T ss_dssp TE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCC
T ss_pred Cc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccc
Confidence 77 6677788888999999999999999999888888876533210 0000 0
Q ss_pred -C----CcccCCCCCCCceeEEEEccCCCEEEE-------------EeCCccEEEEEccCCCcccccCCCCCcEEEEEEC
Q 012699 376 -C----SRFCDPESSKSCRHEMALDVNGRRLLV-------------TSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWH 437 (458)
Q Consensus 376 -~----~~~~~~~~~~~~v~~~~~s~~g~~l~~-------------~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~ 437 (458)
. ........+...+..++++|||+++++ ......+++||+.+++.. .+. ..+.+++|+
T Consensus 541 d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~---~~v~~~~~S 616 (1045)
T 1k32_A 541 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK---NNLTDLRLS 616 (1045)
T ss_dssp CCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE---EEEEEEEEC
T ss_pred cccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee---cCcceEEEC
Confidence 0 001111224466889999999988875 122457888898876532 222 678899999
Q ss_pred CCCCeEEEecCCCcEEEEeCC
Q 012699 438 PTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 438 ~~~~~l~s~~~dg~v~iw~l~ 458 (458)
|||+.|++++.| .|++||+.
T Consensus 617 ~DG~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 617 ADRKTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp TTSCEEEEEETT-SCEEEEES
T ss_pred CCCCEEEEEcCC-cEEEEeCc
Confidence 999999998877 89999973
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.5e-29 Score=239.78 Aligned_cols=316 Identities=14% Similarity=0.132 Sum_probs=235.9
Q ss_pred CCccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCCCeEEEEeCC
Q 012699 79 RPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTSPISCCRFSS 157 (458)
Q Consensus 79 ~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~ 157 (458)
++.++.++++++.++++.+||..... .+.++. +|. +.+++|+|
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~----------------------------------~~~~i~~g~~--~~~v~~sp 188 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKK----------------------------------IVKVIDTGYA--VHISRMSA 188 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCC----------------------------------EEEEEECSTT--EEEEEECT
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCce----------------------------------EEEEEecCcc--cceEEECC
Confidence 45567778888888888888764422 444555 343 88999999
Q ss_pred CCCEEEEEeCCCcEEEEec--CCCCCCCccccccCCCceEEEEEecC----CCeEEEEEc-CCCcEEEEEcCCCceeeec
Q 012699 158 SGNNIASASVDGTVRIWTY--DSSTPASRNATIYCGTEIMSLEWECK----SDRLLLIGT-ADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~-~dg~i~~wd~~~~~~~~~~ 230 (458)
||++|++++.|++|++||+ .+++.. .....+..+..++|+ + +++++++++ .+++|.+||..+++++..+
T Consensus 189 dg~~l~v~~~d~~V~v~D~~~~t~~~~---~~i~~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 189 SGRYLLVIGRDARIDMIDLWAKEPTKV---AEIKIGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp TSCEEEEEETTSEEEEEETTSSSCEEE---EEEECCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEECCCCeEEEEECcCCCCcEE---EEEecCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 9999999999999999999 555443 234456778999999 5 777787777 4899999999999988877
Q ss_pred cCCC---------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 231 NTTD---------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 231 ~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
.... ....+..+.++|++..++....+. +.|.+||..+.+........ +...+..++|
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~------------g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~ 331 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET------------GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGW 331 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEECTTSSSCEEEEEE-CCSSCCCEEE
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCC------------CeEEEEEecCCCcceeEEec-cCcCccCceE
Confidence 6531 123688999999888766655443 69999999887655422221 3345778999
Q ss_pred ccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC----CCCCeEEEEEcCC-CCEEEEec-CCCeEEEEeccC-------C
Q 012699 302 NHNGKILAASA-VDGMIHMFDMSAGLQITGWPA----HDSAISSILFGPD-ETSIFSLG-SDGKIIEWSLQN-------Q 367 (458)
Q Consensus 302 ~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~ 367 (458)
+|+|++|++++ .+++|.+||+.+++++..+.. |.+....+ ++|+ +..++++. .|++|.+||+.+ .
T Consensus 332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~ 410 (543)
T 1nir_A 332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 410 (543)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcC
Confidence 99999877655 588999999999998888774 55444443 4676 66667765 589999999987 2
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-------CCccEEEEEccCCCccccc---------CCCCCcE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-------GSVRAPIYQVRGHASGMRT---------LPHGAAI 431 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-------~~~~i~i~~~~~~~~~~~~---------~~h~~~v 431 (458)
+.+.. ...+...+..++++|+|++|++++ .+++|.+||+.+.+..... ..+...+
T Consensus 411 ~~v~~---------l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~ 481 (543)
T 1nir_A 411 KKVAE---------LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRV 481 (543)
T ss_dssp SEEEE---------EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEE
T ss_pred eEEEE---------EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCce
Confidence 22211 123445677899999999999987 2679999999988766333 2467889
Q ss_pred EEEEECCCCCeEEEe-----cCCCcEEEEeC
Q 012699 432 TTVDWHPTLPMFLTG-----SADHSVQVMSL 457 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~-----~~dg~v~iw~l 457 (458)
..+.|+|+|+.|+++ +.|+.|.|||.
T Consensus 482 ~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 482 VQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp EEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred EeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 999999999977755 34799999996
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=4.2e-30 Score=243.64 Aligned_cols=342 Identities=10% Similarity=0.067 Sum_probs=253.4
Q ss_pred eeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcc
Q 012699 29 YANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAG 108 (458)
Q Consensus 29 ~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 108 (458)
+.+| ++++.++++++.|+++.+||..+++....+..- .....+.++++++++++++.++++.+|++....
T Consensus 142 ~~~~-~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t---- 211 (543)
T 1nir_A 142 LNDL-DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE---- 211 (543)
T ss_dssp CSCC-CGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETTSEEEEEETTSSS----
T ss_pred cccc-CCCCEEEEEEcCCCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCCCeEEEEECcCCC----
Confidence 3358 899999999999999999999988766444310 012346778889999999999999999983100
Q ss_pred cceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCC----CCCEEEEEeC-CCcEEEEecCCCCCCC
Q 012699 109 DIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSS----SGNNIASASV-DGTVRIWTYDSSTPAS 183 (458)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~-dg~v~iwd~~~~~~~~ 183 (458)
+ +.+.++. +...+..++|+| ||++|++++. +++|.+||..+.+.+.
T Consensus 212 --------------~--------------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~ 262 (543)
T 1nir_A 212 --------------P--------------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 262 (543)
T ss_dssp --------------C--------------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred --------------C--------------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccce
Confidence 0 0333444 344578999999 9999998874 8999999998877654
Q ss_pred cccccc---------CCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCCCCCCceeeeeecCCCCeEE
Q 012699 184 RNATIY---------CGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 184 ~~~~~~---------~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
...... ....+..+.++|.+..++++...++.|.+||..+.+.+. .+.. ...+.++.|+|++++++
T Consensus 263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEE
T ss_pred eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEE
Confidence 322211 123688999997778888899999999999998866443 3322 24578899999999877
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC--CCCcEEEEEEccC-CCEEEEEe-cCCeEEEEeCCC----
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHN-GKILAASA-VDGMIHMFDMSA---- 324 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~-~dg~i~v~d~~~---- 324 (458)
++.... +.|.+||+.+++....+.... |......+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 340 va~~~~------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~ 406 (543)
T 1nir_A 340 TAANNS------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP 406 (543)
T ss_dssp EEEGGG------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred EEecCC------------CeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc
Confidence 665433 499999999999888876432 44333333 4777 55666665 579999999988
Q ss_pred ---CceeeeeeCCCCCeEEEEEcCCCCEEEEec-------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 325 ---GLQITGWPAHDSAISSILFGPDETSIFSLG-------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 325 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
.+.++++..|...+..++++|++++|++++ .+++|.+||+.+.+................+...+..++|
T Consensus 407 ~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 407 QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 889999999998899999999999999987 2779999999987654222111111112234677999999
Q ss_pred ccCCCEEEEEe-----CCccEEEEEccCCCcccccC
Q 012699 395 DVNGRRLLVTS-----GSVRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 395 s~~g~~l~~~~-----~~~~i~i~~~~~~~~~~~~~ 425 (458)
+|+|+.|+++. .++.|.|||..+.+....+.
T Consensus 487 ~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 487 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99999999774 36999999999987654444
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4.4e-30 Score=235.27 Aligned_cols=263 Identities=12% Similarity=0.117 Sum_probs=173.4
Q ss_pred CCcceeeeeeccCCCceeeeeecCcceEEecccccccc------------ccceeeeeccCCceeeeeCCccceeEeecc
Q 012699 23 NSETIKYANIGQTKNSTLASGVNEESLLLSTNSSEACA------------TTATHMGSAEMGQTWASSRPALSRFATNMS 90 (458)
Q Consensus 23 h~~~i~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (458)
|...+....+ ++++.+|++|+.|++++||+.+.+... +.+..++|+|. .......++++|++++
T Consensus 88 ~~~~~~~~~~-~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~---~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 88 HDGDGNVNSS-PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADV---YSADNRLAEQVIASVG 163 (393)
T ss_dssp ---------C-CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEE---ECTTCSEEEEEEEEEE
T ss_pred cCCCcceeec-CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccc---cccccCCCCCEEEEEE
Confidence 4444455555 788899999999999999998876432 12333444432 0011223789999999
Q ss_pred CCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCC-EEEEEeCCC
Q 012699 91 GNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGN-NIASASVDG 169 (458)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg 169 (458)
.|+++++||+.... .+..+.+|.++|.+++|+|++. +|++++.|+
T Consensus 164 ~D~tv~~Wd~~~~~----------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 164 DDCTLIIWRLTDEG----------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp TTSEEEEEEEETTE----------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCeEEEEECCCCc----------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 99999999986533 4445668999999999999874 799999999
Q ss_pred cEEEEecCCCCCCCcc-----------------------ccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 170 TVRIWTYDSSTPASRN-----------------------ATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
+|++||+.+++..... ....+...+.++.|.++++..+++++.|+++++||+.+++.
T Consensus 210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 9999999876542211 11234567889999888999999999999999999998876
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--C
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--N 304 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~ 304 (458)
...+..+. ..+..+.+.|+..... .+...+. ..++| +
T Consensus 290 ~~~l~~~~--~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~-~~~~~~~~ 328 (393)
T 4gq1_A 290 YNEISDST--MKLGPKNLLPNVQGIS--------------------------------------LFPSLLG-ACPHPRYM 328 (393)
T ss_dssp ----------------CCSCSEEEEC--------------------------------------SSCCSSC-CEECSSCT
T ss_pred CceEeeec--CccccEEEcccccccc--------------------------------------ccCccee-EEEccCCC
Confidence 65554433 3344444444322111 1111122 23333 4
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
+.++++|+.||.|++||+.+++....+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 329 ~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 329 DYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp TEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 44667788899999999999999888889999999999999999999998765 6677665
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.8e-28 Score=208.37 Aligned_cols=228 Identities=15% Similarity=0.144 Sum_probs=161.9
Q ss_pred eccCCCCcC----CCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCEEEEEe--CCCcEEEEecCC-CCCCCccc
Q 012699 114 FNDGLYTEN----GRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNNIASAS--VDGTVRIWTYDS-STPASRNA 186 (458)
Q Consensus 114 ~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~-~~~~~~~~ 186 (458)
....+|+|+ +..++.+ +|...|..+ ++++++.+++ .|++|++|++.. ++... .
T Consensus 114 v~sla~spd~~~~~~~l~s~---------------g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--s 173 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKS---------------GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--N 173 (356)
T ss_dssp EEEECC------CCEEEEEE---------------EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEE--E
T ss_pred eEEEEECCCccccccEEEeC---------------CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceee--e
Confidence 455667888 6555542 344445444 5776666644 599999999944 44322 3
Q ss_pred cccCCCceEEEEEec--CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCc
Q 012699 187 TIYCGTEIMSLEWEC--KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSS 263 (458)
Q Consensus 187 ~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
...+...+..++|+| .++.+|++++.|++|++||+++++++.++..+. +...+.+++|+|++..+++++.+.. ...
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~-~w~ 252 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA-KES 252 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC-cce
Confidence 345667777777774 367899999999999999999999999987543 2346778899999998877664321 122
Q ss_pred ceeeccceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeE-
Q 012699 264 NIYSWGFASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAIS- 339 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~- 339 (458)
.+.+..+++|++||..+++.+..+.. .+|...+.+..++ +.++++|+.|++|+|||+.+++++.++.+|...+.
T Consensus 253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 34455668999999999988766532 3555455444444 78999999999999999999999999999987655
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEec
Q 012699 340 SILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
+++|+|||++|++|+.|++|++||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 5899999999999999999999996
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.97 E-value=1.2e-27 Score=237.99 Aligned_cols=294 Identities=9% Similarity=0.039 Sum_probs=206.5
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCC---CCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSS---TPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
..|.+++|+|||++|++++. +.|++||+.++ ... ....+...+..++|+ +++++|++++ ++.|++||+.++
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~S-PDG~~la~~~-~~~i~~~d~~~g 182 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLS-PKGGFVSFIR-GRNLWVIDLASG 182 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEEC-TTSSEEEEEE-TTEEEEEETTTT
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCC-CCCCEEEEEe-CCcEEEEecCCC
Confidence 45788999999999999886 99999999887 332 233455779999999 6788888876 468999999988
Q ss_pred ceeeeccCCCCC--------------CceeeeeecCCCCeEEEeecccCCCCcc------------------eee--ccc
Q 012699 225 RVVCDLNTTDAF--------------PSVLDLKCSPVEPIFVSAAASRRYGSSN------------------IYS--WGF 270 (458)
Q Consensus 225 ~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~--~~~ 270 (458)
+........... ..+..+.|+|+++.+++++.+....... ..+ ...
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 766544332210 1147899999999999887653211000 000 011
Q ss_pred eeEEEEECCC-CceeEEeecCCCCCcEEEEEEccCCCEEEEEec-----CCeEEEEeCCCCceeeeeeCCCC----CeEE
Q 012699 271 ASLTVWNMKT-WKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-----DGMIHMFDMSAGLQITGWPAHDS----AISS 340 (458)
Q Consensus 271 g~i~i~d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~~~~~~~~~~~~~----~v~~ 340 (458)
..|.+||+.+ ++.........+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 2788899988 776554322246677999999 99999987764 56899999999887776665543 4568
Q ss_pred EEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE-EEccCCCEEEEEeC-Cc--cEEEEEcc
Q 012699 341 ILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM-ALDVNGRRLLVTSG-SV--RAPIYQVR 416 (458)
Q Consensus 341 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~~~~~-~~--~i~i~~~~ 416 (458)
++|+|||+++++++.||.+++|.+....... . ...+...+..+ .|+|+|+.|++.+. ++ .++||++.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~-~--------l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKAA-A--------LTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCEE-E--------SCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCee-e--------eeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999999988888776332211 1 11234556676 59999998865554 44 89999987
Q ss_pred CCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeC
Q 012699 417 GHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSL 457 (458)
Q Consensus 417 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l 457 (458)
..............+.+++|+|||++|+....+ +.+.+|++
T Consensus 413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 413 LQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp TTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred cCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 532322233336678899999999987765433 45777764
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=4.2e-28 Score=223.32 Aligned_cols=267 Identities=13% Similarity=0.114 Sum_probs=202.2
Q ss_pred eeeccCCCCeEEEEeCC--------------CCCEEEEEeCC------CcEEEEecCCCCCCCccccccCCCceEEEEEe
Q 012699 141 ETFLGHTSPISCCRFSS--------------SGNNIASASVD------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWE 200 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~--------------~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 200 (458)
..+.+|...+..+++++ .+..++.++.+ ++|++||+++.... ....+...+.+++|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~---~l~~~~~~v~~~~~S 187 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF---VVHRSPQPLMSPAWS 187 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE---EEEEESSCEEEEEEC
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE---EEeCCCCcceeeEEc
Confidence 34667777777766654 25567666654 79999999754322 334567789999999
Q ss_pred cCCCeEEEEEcCCC---cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEE
Q 012699 201 CKSDRLLLIGTADG---GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 201 ~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
++++.|++++.++ .|++||+.+++... +..+ ...+.+++|+|+++.++ +++.++ ...|++|
T Consensus 188 -pdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g-----------~~~i~~~ 252 (415)
T 2hqs_A 188 -PDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTG-----------SLNLYVM 252 (415)
T ss_dssp -TTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTS-----------SCEEEEE
T ss_pred -CCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCC-----------CceEEEE
Confidence 6788888888775 99999999988754 3322 25789999999999887 444332 1379999
Q ss_pred ECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
|+.+++... +..+...+.+++|+|+|++|++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|+++
T Consensus 253 d~~~~~~~~---l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 253 DLASGQIRQ---VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp ETTTCCEEE---CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEe---CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEE
Confidence 999877632 3456678999999999999988876 44 688889987764 4455677789999999999999988
Q ss_pred cCC---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEEEEEccCCCcccccCCC
Q 012699 354 GSD---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAPIYQVRGHASGMRTLPH 427 (458)
Q Consensus 354 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~i~~~~~~~~~~~~~~h 427 (458)
+.+ ..|++||+.+..... +. .+ ..+..++|+|+|++|++++.++ .|++||+.+. ....+.+|
T Consensus 329 ~~~~g~~~i~~~d~~~~~~~~-------l~---~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~~ 396 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGVQV-------LS---ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPAT 396 (415)
T ss_dssp EECSSCEEEEEEETTTCCEEE-------CC---CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCS
T ss_pred ECcCCceEEEEEECCCCCEEE-------ec---CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEEEeeCC
Confidence 764 589999998764321 11 11 2688999999999999988876 7999999755 45667789
Q ss_pred CCcEEEEEECCCCC
Q 012699 428 GAAITTVDWHPTLP 441 (458)
Q Consensus 428 ~~~v~~~~~~~~~~ 441 (458)
.+.|.+++|+|...
T Consensus 397 ~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 397 DGQVKFPAWSPYLH 410 (415)
T ss_dssp SSEEEEEEECCCCC
T ss_pred CCCCcCCccccccc
Confidence 99999999999754
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=6.4e-29 Score=228.78 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=207.3
Q ss_pred CCCeEEEEeCCCCC-EEEEEe----CCC----cEEEEec--CCCCCCCccccccCCCceEEEEEecC-------------
Q 012699 147 TSPISCCRFSSSGN-NIASAS----VDG----TVRIWTY--DSSTPASRNATIYCGTEIMSLEWECK------------- 202 (458)
Q Consensus 147 ~~~v~~~~~~~~~~-~l~s~~----~dg----~v~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 202 (458)
...+....|.+.|. ++++|+ .|| ++++||+ .+++.+.......+...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888888775 566776 467 8999999 77765422223344445555555421
Q ss_pred CCeEEEEEcCC------CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 203 SDRLLLIGTAD------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 203 ~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
.+..++.++.+ +.|++||++.+. ...+..+. ..+.+++|+|+++.+++++.+.. ...|++|
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~--~~v~~~~~Spdg~~la~~s~~~~----------~~~i~~~ 208 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSP--QPLMSPAWSPDGSKLAYVTFESG----------RSALVIQ 208 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEES--SCEEEEEECTTSSEEEEEECTTS----------SCEEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCC--CcceeeEEcCCCCEEEEEEecCC----------CcEEEEE
Confidence 13445544443 799999998544 34444333 57999999999999999886631 1399999
Q ss_pred ECCCCceeEEeecCCCCCcEEEEEEccCCCEEE-EEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe
Q 012699 277 NMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA-ASAVDG--MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
|+.+++..... .+...+.+++|+|+|++|+ +++.++ .|++||+.+++. ..+..|...+.+++|+|+|++|+++
T Consensus 209 d~~tg~~~~l~---~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~ 284 (415)
T 2hqs_A 209 TLANGAVRQVA---SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFT 284 (415)
T ss_dssp ETTTCCEEEEE---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCcEEEee---cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEE
Confidence 99998776433 4556799999999999888 566555 499999988765 5677888899999999999998887
Q ss_pred cC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccCCCcccccCCC
Q 012699 354 GS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRGHASGMRTLPH 427 (458)
Q Consensus 354 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~~~~~~~~~~h 427 (458)
+. ++ .|.+||+.+..... ...+...+..++|+|+|++|++++.+ ..|++||+.+++. ..+..|
T Consensus 285 s~~~g~~~i~~~d~~~~~~~~----------l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 353 (415)
T 2hqs_A 285 SDQAGRPQVYKVNINGGAPQR----------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSST 353 (415)
T ss_dssp ECTTSSCEEEEEETTSSCCEE----------CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCS
T ss_pred ECCCCCcEEEEEECCCCCEEE----------EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCC
Confidence 76 45 67777887653211 11234568899999999999988864 5899999988754 344455
Q ss_pred CCcEEEEEECCCCCeEEEecCCC---cEEEEeCC
Q 012699 428 GAAITTVDWHPTLPMFLTGSADH---SVQVMSLS 458 (458)
Q Consensus 428 ~~~v~~~~~~~~~~~l~s~~~dg---~v~iw~l~ 458 (458)
. .+.+++|+|+|++|++++.|+ .|++||++
T Consensus 354 ~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 354 F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 4 899999999999999888777 79999874
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.96 E-value=6.3e-27 Score=210.73 Aligned_cols=277 Identities=10% Similarity=0.188 Sum_probs=189.5
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-CcEEEEEcC--CCcee--eeccCCCC
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-GGIKAWNVD--AKRVV--CDLNTTDA 235 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~~wd~~--~~~~~--~~~~~~~~ 235 (458)
.+++++.|+.|++|++.............+...+..++|+ +++++|++++.+ +.|.+|++. +++.. ..+...
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-- 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS--
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC--
Confidence 3445578999999999642222122334566778899999 667777777665 999999998 55533 333322
Q ss_pred CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC---CceeEEeecCCCCCcEEEEEEccCCCEEEEEe
Q 012699 236 FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT---WKAMTVLPLGEDPPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 312 (458)
..+..++|+|+++.+++++... +.|.+||+.. .+....+. ....+.+++|+|+++++++++
T Consensus 84 -~~~~~~~~s~dg~~l~~~~~~~------------~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 84 -GSLTHISTDHQGQFVFVGSYNA------------GNVSVTRLEDGLPVGVVDVVE---GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp -SCCSEEEECTTSSEEEEEETTT------------TEEEEEEEETTEEEEEEEEEC---CCTTBCCCEECTTSSEEEEEE
T ss_pred -CCCcEEEEcCCCCEEEEEecCC------------CeEEEEECCCCcccccccccc---CCCCceEEEECCCCCEEEEec
Confidence 3678999999999887776533 5899999943 33333332 224588899999999888877
Q ss_pred -cCCeEEEEeCCC-Cceee----eeeC-CCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCC-CeeEEeecCCcccCCC
Q 012699 313 -VDGMIHMFDMSA-GLQIT----GWPA-HDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPE 383 (458)
Q Consensus 313 -~dg~i~v~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 383 (458)
.++.|++||+.+ ++... .+.. ....+..++|+|++++++++ ..++.|.+|++... +...............
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 899999999987 54432 2232 34578899999999977554 57999999999642 2211111111111111
Q ss_pred CCCCceeEEEEccCCCEEEEEe-CCccEEEEEccC--CC--cccccCCCCCcEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRG--HA--SGMRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSL 457 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~--~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l 457 (458)
.....+..++|+|+|++|+++. .++.|.+|++.. +. ....+..+. .+.+++|+|++++|++++ .|+.|.+|++
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 2234577899999999888655 689999999983 21 111222333 388999999999877776 6899999965
No 135
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2.4e-26 Score=228.70 Aligned_cols=285 Identities=11% Similarity=0.116 Sum_probs=208.3
Q ss_pred CCCeEEEEeCCCCCEEEEEeC-CC-----cEEEEecCCCCCCCccccccCC----------------------CceEEEE
Q 012699 147 TSPISCCRFSSSGNNIASASV-DG-----TVRIWTYDSSTPASRNATIYCG----------------------TEIMSLE 198 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~-dg-----~v~iwd~~~~~~~~~~~~~~~~----------------------~~v~~~~ 198 (458)
...|.+++|+|||++|++++. |+ +|++||+.+++........... ..+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999887653222111111 2378899
Q ss_pred EecCCCeEEEEEcCCCcEEEEEcCCCc--eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 199 WECKSDRLLLIGTADGGIKAWNVDAKR--VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 199 ~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
|+ +++++|++++. +.|.+||+.++. ....+..+ ...+..++|+|+|+.++.++.+ .|++|
T Consensus 116 ~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~--~~~~~~~~~SPDG~~la~~~~~--------------~i~~~ 177 (741)
T 2ecf_A 116 WS-PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHG--EGFATDAKLSPKGGFVSFIRGR--------------NLWVI 177 (741)
T ss_dssp EC-TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCS--SSCEEEEEECTTSSEEEEEETT--------------EEEEE
T ss_pred EC-CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccC--CcccccccCCCCCCEEEEEeCC--------------cEEEE
Confidence 99 77888888776 899999999882 22333333 2578999999999999988753 99999
Q ss_pred ECCCCceeEEeecCCCCCc----------------EEEEEEccCCCEEEEEecCC-------------------------
Q 012699 277 NMKTWKAMTVLPLGEDPPA----------------ITSLCFNHNGKILAASAVDG------------------------- 315 (458)
Q Consensus 277 d~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~l~~~~~dg------------------------- 315 (458)
|+.+++...... .+... +..++|+|||++|++++.|+
T Consensus 178 d~~~g~~~~~~~--~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 178 DLASGRQMQLTA--DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp ETTTTEEEECCC--CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred ecCCCCEEEecc--CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 999877655432 12121 47799999999999988775
Q ss_pred --------eEEEEeCCC-Cceeeeee--CCCCCeEEEEEcCCCCEEEEecC-----CCeEEEEeccCCCeeEEeecCCcc
Q 012699 316 --------MIHMFDMSA-GLQITGWP--AHDSAISSILFGPDETSIFSLGS-----DGKIIEWSLQNQGQVLWTRNCSRF 379 (458)
Q Consensus 316 --------~i~v~d~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~ 379 (458)
.|++||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.++..........
T Consensus 256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-- 332 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-- 332 (741)
T ss_dssp TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--
T ss_pred CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--
Confidence 899999988 77654432 47788999999 99999987653 5679999998765433221100
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE-EECCCCCeEE-EecCCC--cEEEE
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV-DWHPTLPMFL-TGSADH--SVQVM 455 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~l~-s~~~dg--~v~iw 455 (458)
......+..++|+|||+++++++.++.++||.++.......+..|...|.++ .|+|+++.|+ +++.|+ .++||
T Consensus 333 ---~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~ 409 (741)
T 2ecf_A 333 ---PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIY 409 (741)
T ss_dssp ---SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEE
T ss_pred ---CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEE
Confidence 0001134578999999988888889887888765322255566778888887 5999999765 455555 89999
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
++
T Consensus 410 ~~ 411 (741)
T 2ecf_A 410 AV 411 (741)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=8.8e-26 Score=224.01 Aligned_cols=294 Identities=13% Similarity=0.068 Sum_probs=196.3
Q ss_pred eeccCCC---CeEEEEeCCCCCEEEEEeCC---------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEE
Q 012699 142 TFLGHTS---PISCCRFSSSGNNIASASVD---------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLI 209 (458)
Q Consensus 142 ~~~~h~~---~v~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 209 (458)
.+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++.........+...+..++|+ ++++.|++
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~S-PdG~~la~ 130 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWG-PKGQQLIF 130 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBC-SSTTCEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEEC-CCCCEEEE
Confidence 3444544 48999999999999999764 78889999987752211112233347889999 67777887
Q ss_pred EcCCCcEEEEEcCCCceeeeccCCCCC----------------CceeeeeecCCCCeEEEeecccCCCCcce--------
Q 012699 210 GTADGGIKAWNVDAKRVVCDLNTTDAF----------------PSVLDLKCSPVEPIFVSAAASRRYGSSNI-------- 265 (458)
Q Consensus 210 ~~~dg~i~~wd~~~~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 265 (458)
++. +.|++||+.+++.......+... ..+..+.|+|+++.+++++.+...-....
T Consensus 131 ~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~ 209 (723)
T 1xfd_A 131 IFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSI 209 (723)
T ss_dssp EET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSS
T ss_pred EEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcC
Confidence 775 79999999988776544432210 12378999999999998876531100000
Q ss_pred -------------eeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCC
Q 012699 266 -------------YSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCFNHNGKILAASAV----DGMIHMFDMSA 324 (458)
Q Consensus 266 -------------~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~ 324 (458)
.......|++||+.+++....+.... +...+..++|+|||+++++... +..|++||+.+
T Consensus 210 ~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 289 (723)
T 1xfd_A 210 YPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (723)
T ss_dssp SCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred CCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC
Confidence 00113489999999887655543211 2457899999999998877653 35799999999
Q ss_pred CceeeeeeC-CCCCe----EEEEEcCCCCEEEE--ecCCC------eEEEEeccCCCe---eEEeecCCcccCCCCCCCc
Q 012699 325 GLQITGWPA-HDSAI----SSILFGPDETSIFS--LGSDG------KIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 325 ~~~~~~~~~-~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~ 388 (458)
++....+.. +...+ ..++|+|||+.|+. +..++ .|.+||+...+. .. .+ ......
T Consensus 290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------~l---~~~~~~ 360 (723)
T 1xfd_A 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ------SI---TSGDWD 360 (723)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC------BS---CCSSSC
T ss_pred CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee------Ee---ecCCeE
Confidence 887665543 33433 37899999997775 44566 466677322222 11 11 112223
Q ss_pred eeE-EEEccCCCEEEEEeCC---ccEEEEEccCCC--cccccCC---CCCcEEEEEECCCCCeEEEe
Q 012699 389 RHE-MALDVNGRRLLVTSGS---VRAPIYQVRGHA--SGMRTLP---HGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 389 v~~-~~~s~~g~~l~~~~~~---~~i~i~~~~~~~--~~~~~~~---h~~~v~~~~~~~~~~~l~s~ 446 (458)
+.. ++|+|||+.|+..+.+ +.++||++.... ....+.. |...+..++|+|||++|+..
T Consensus 361 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 443 6999999999876665 789999986532 2223332 67789999999999977754
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=9.6e-26 Score=223.03 Aligned_cols=296 Identities=12% Similarity=0.114 Sum_probs=205.0
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC--
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA-- 223 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-- 223 (458)
+...|.+++|+|| +.++.+. ++++++||+.+++... ...+...+..++|+ ++++.|+++ .++.|++||+.+
T Consensus 80 ~~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~ 152 (706)
T 2z3z_A 80 DAFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY---LFDTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLG 152 (706)
T ss_dssp --CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE---EECCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTT
T ss_pred cccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE---ccCCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCccc
Confidence 3467999999999 6665553 5999999998775432 23345668889999 677777775 679999999998
Q ss_pred ---CceeeeccCCCC------------CCceeeeeecCCCCeEEEeecccCCCCcc-e-------------------eec
Q 012699 224 ---KRVVCDLNTTDA------------FPSVLDLKCSPVEPIFVSAAASRRYGSSN-I-------------------YSW 268 (458)
Q Consensus 224 ---~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~ 268 (458)
++.......... ...+..+.|+|+++.+++++.+...-... . ...
T Consensus 153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 776544333221 01257899999999999887432110000 0 011
Q ss_pred cceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeeeee--CCCC---Ce
Q 012699 269 GFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITGWP--AHDS---AI 338 (458)
Q Consensus 269 ~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~--~~~~---~v 338 (458)
....|.+||+.+++.........+...+.+++|+|||++|++++.++ .|++||+.+++....+. .+.. .+
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 33689999999887655443334566799999999999999987775 89999999884333332 2222 34
Q ss_pred EEEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEccCCCEEEEEeCC-c----cE
Q 012699 339 SSILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALDVNGRRLLVTSGS-V----RA 410 (458)
Q Consensus 339 ~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~-~----~i 410 (458)
..++|+| +|+++++++.|+.+++|++.......... ..+...+.. ++|+|+|+.|++++.+ + .|
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l 384 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF 384 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec--------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence 6789999 99999999999999999887322222111 123445665 7999999988776654 3 56
Q ss_pred EEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeCC
Q 012699 411 PIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSLS 458 (458)
Q Consensus 411 ~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l~ 458 (458)
+.|++.++. .....|...+.+++|+|||++|+..+.+ +.|++||++
T Consensus 385 ~~~d~~~~~--~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 385 YCIDIKGGK--TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEETTCCC--CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EEEEcCCCC--ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 666766653 3344577789999999999988766433 569999863
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=7e-25 Score=196.33 Aligned_cols=277 Identities=11% Similarity=0.105 Sum_probs=191.5
Q ss_pred EEeCCCCCE-EEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCce-eee
Q 012699 153 CRFSSSGNN-IASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKRV-VCD 229 (458)
Q Consensus 153 ~~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~-~~~ 229 (458)
..|.+++++ +++++.+++|.+||..+++..... ..+...+ .++|+ ++++ +++++..++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI--TLGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE--ECCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE--EccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 345665555 678888999999999988764322 2234455 99999 5555 445555589999999999887 555
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (458)
+.... .+..+++++|+++.+++...+. +.+.|.+||+.+++....+... ....+++|+|+|++++
T Consensus 79 ~~~~~--~~~~~~~~s~dg~~l~~~~~~~----------~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~ 143 (331)
T 3u4y_A 79 IQEGQ--SSMADVDITPDDQFAVTVTGLN----------HPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLI 143 (331)
T ss_dssp EEECS--SCCCCEEECTTSSEEEECCCSS----------SSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEE
T ss_pred cccCC--CCccceEECCCCCEEEEecCCC----------CcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEE
Confidence 54443 3344499999999988544331 0028999999999888877643 3468999999998665
Q ss_pred EE-ecCCe-EEEEeCCCCcee----eeeeCCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCe---eEEeecCCcc
Q 012699 310 AS-AVDGM-IHMFDMSAGLQI----TGWPAHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQ---VLWTRNCSRF 379 (458)
Q Consensus 310 ~~-~~dg~-i~v~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~---~~~~~~~~~~ 379 (458)
++ ..++. |.+|++.....+ ............++|+|+|++++ ++..++.|.+||+.+.+. .....
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----- 218 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----- 218 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----
T ss_pred EEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----
Confidence 55 45578 999998753332 12223455689999999999655 455689999999987654 22111
Q ss_pred cCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCc--cc----ccCCCC---CcEEEEEECCCCCeEEE-ecC
Q 012699 380 CDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHAS--GM----RTLPHG---AAITTVDWHPTLPMFLT-GSA 448 (458)
Q Consensus 380 ~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~--~~----~~~~h~---~~v~~~~~~~~~~~l~s-~~~ 448 (458)
....+..++|+|+|++|++++ .++.|.+||+.+++. .. .+..+. .....++|+|++++|++ +..
T Consensus 219 -----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 219 -----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp -----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred -----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 224567899999999887765 478899999987654 11 111111 22356899999997755 455
Q ss_pred CCcEEEEeCC
Q 012699 449 DHSVQVMSLS 458 (458)
Q Consensus 449 dg~v~iw~l~ 458 (458)
++.|++||++
T Consensus 294 ~~~v~v~d~~ 303 (331)
T 3u4y_A 294 SRELKVFTIS 303 (331)
T ss_dssp TTEEEEEETT
T ss_pred CCcEEEEEec
Confidence 6799999974
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=5.9e-26 Score=225.25 Aligned_cols=284 Identities=10% Similarity=0.050 Sum_probs=200.6
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCC---------CcE
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTAD---------GGI 216 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~d---------g~i 216 (458)
.+.+++|+|||+++++ +.||+|++||+.+++.... ...+.. .+.+++|+ +++++|++++.+ +.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~--~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i 93 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL--IEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYY 93 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE--ECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE--eccccccccccceEEEC-CCCCEEEEEecCccceeecceeeE
Confidence 4678899999998776 7899999999998875421 112222 48999999 778888888764 788
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC---
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP--- 293 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--- 293 (458)
.+||+.+++.........+...+..++|+|+|+.++.++.. .|++||+.+++...........
T Consensus 94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~--------------~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN--------------NIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT--------------EEEEESSSSSCCEEEECCCBTTTEE
T ss_pred EEEECCCCceEeccCCccccccccccEECCCCCEEEEEECC--------------eEEEEECCCCceEEEecCCCCCceE
Confidence 89999998763222222222348899999999999988763 9999999988776654321111
Q ss_pred -------------CcEEEEEEccCCCEEEEEecCC----------------------------------eEEEEeCCCCc
Q 012699 294 -------------PAITSLCFNHNGKILAASAVDG----------------------------------MIHMFDMSAGL 326 (458)
Q Consensus 294 -------------~~i~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~ 326 (458)
..+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 1237899999999999987653 79999999887
Q ss_pred eeeeeeCC------CCCeEEEEEcCCCCEEEEecC----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCce----eEE
Q 012699 327 QITGWPAH------DSAISSILFGPDETSIFSLGS----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCR----HEM 392 (458)
Q Consensus 327 ~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~ 392 (458)
....+..+ ...+..++|+|||++|++.+. +..|++||+.+++....... .+...+ ..+
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--------ESEAWLHRQNEEP 311 (723)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--------ECSSCCCCCCCCC
T ss_pred eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--------ccCCEEeccCCCc
Confidence 65666554 567899999999998876643 45799999987654322111 011111 368
Q ss_pred EEccCCCEEEEE--eCCc------cEEEEE-ccCCCc--ccccCCCCCcEEE-EEECCCCCeEEEecCC---CcEEEEeC
Q 012699 393 ALDVNGRRLLVT--SGSV------RAPIYQ-VRGHAS--GMRTLPHGAAITT-VDWHPTLPMFLTGSAD---HSVQVMSL 457 (458)
Q Consensus 393 ~~s~~g~~l~~~--~~~~------~i~i~~-~~~~~~--~~~~~~h~~~v~~-~~~~~~~~~l~s~~~d---g~v~iw~l 457 (458)
+|+|||+.|+.. ..++ .|++|| ..+... ...+..+...+.. ++|+|||+.|+..+.+ +.++||++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 999999988764 3455 577777 344331 4444444444554 6999999988765544 78999986
Q ss_pred C
Q 012699 458 S 458 (458)
Q Consensus 458 ~ 458 (458)
+
T Consensus 392 ~ 392 (723)
T 1xfd_A 392 N 392 (723)
T ss_dssp C
T ss_pred e
Confidence 3
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=1.1e-24 Score=196.92 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=208.0
Q ss_pred CCCeEEEEeCCCCCEEEEEeC-------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 147 TSPISCCRFSSSGNNIASASV-------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
...+..++|+|+++++++++. ++.|.+||..+++... .......+..++|+|.+..++++...++.|.+|
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ---AIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE---EEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE---EEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 356789999999999888774 5689999998877543 223345577889995444466667778999999
Q ss_pred EcCCCceeeeccCCCCCC-------ceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 220 NVDAKRVVCDLNTTDAFP-------SVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
|..+++....+....... .+..+.++|+++.++++.. +. +.|.+||+.+++....+..
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~------------~~i~~~d~~~~~~~~~~~~-- 182 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKE------------SVIWVVDGGNIKLKTAIQN-- 182 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSS------------CEEEEEETTTTEEEEEECC--
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCC------------ceEEEEcCCCCceEEEecC--
Confidence 999999877776543211 2688999999998777663 22 5899999999988887752
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeC----CCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPA----HDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN 366 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 366 (458)
+...+..++|+|+++++++++.++.|.+||+.+++.+..+.. +...+..++|+|+++++++++. ++.|.+||+.+
T Consensus 183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 223467899999999999999999999999999988877764 4556888999999997766655 59999999987
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
.+....... .....++|+|+|++++++. .++.|.+||..+.+....+. ....+.+++|+|+|++|++
T Consensus 263 ~~~~~~~~~-----------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 263 GNILAKVAA-----------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD-TPTHPNSLALSADGKTLYV 330 (353)
T ss_dssp CCEEEEEEC-----------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE-CCSEEEEEEECTTSCEEEE
T ss_pred CcEEEEEEc-----------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe-cCCCCCeEEEcCCCCEEEE
Confidence 655433221 0124699999999777766 58999999998875544433 3457899999999996665
Q ss_pred ecCC
Q 012699 446 GSAD 449 (458)
Q Consensus 446 ~~~d 449 (458)
+..+
T Consensus 331 ~~~~ 334 (353)
T 3vgz_A 331 SVKQ 334 (353)
T ss_dssp EEEC
T ss_pred EEcc
Confidence 5444
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.4e-24 Score=194.40 Aligned_cols=284 Identities=11% Similarity=0.103 Sum_probs=195.0
Q ss_pred cceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE
Q 012699 82 LSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN 161 (458)
Q Consensus 82 ~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 161 (458)
....+++.+.++.+.+|++.... ....+..+...+ +++|+|++++
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~----------------------------------~~~~~~~~~~~~-~~~~s~dg~~ 53 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLE----------------------------------ILNQITLGYDFV-DTAITSDCSN 53 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCC----------------------------------EEEEEECCCCEE-EEEECSSSCE
T ss_pred CCEEEEEecCCCeEEEEeCcccc----------------------------------eeeeEEccCCcc-eEEEcCCCCE
Confidence 45667788889999999975532 223333445556 9999999997
Q ss_pred EEEEeC-CCcEEEEecCCCCCCCccccccCCCceEE-EEEecCCCeEEEEEcCCC---cEEEEEcCCCceeeeccCCCCC
Q 012699 162 IASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMS-LEWECKSDRLLLIGTADG---GIKAWNVDAKRVVCDLNTTDAF 236 (458)
Q Consensus 162 l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~ 236 (458)
+++++. ++.|.+||+.+++.. ............ ++|+ +++++++++..++ .|.+||+.+++.+..+...
T Consensus 54 l~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--- 127 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEPPK--VVAIQEGQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--- 127 (331)
T ss_dssp EEEEESTTCEEEEEECSSSSCE--EEEEEECSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC---
T ss_pred EEEEeCCCCeEEEEECCCCcee--EEecccCCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC---
Confidence 766655 889999999887651 112223333444 9999 6777777555553 8999999999988776654
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeecccee-EEEEECCCCceeEEe--ecCCCCCcEEEEEEccCCCEEEEEe-
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS-LTVWNMKTWKAMTVL--PLGEDPPAITSLCFNHNGKILAASA- 312 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~i~d~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~- 312 (458)
.....++|+|+++.++++.... +. +.+|++......... ........+..++|+|+|+++++++
T Consensus 128 ~~~~~~~~spdg~~l~~~~~~~------------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 128 YDAVGIAISPNGNGLILIDRSS------------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp TTEEEEEECTTSSCEEEEEETT------------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred CCccceEECCCCCEEEEEecCC------------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence 3568999999998766665432 36 999998764432111 1112234579999999999765554
Q ss_pred cCCeEEEEeCCCCce---eeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 313 VDGMIHMFDMSAGLQ---ITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 313 ~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
.++.|.+||+.+++. +..+.. ...+..++|+|+|+++++++ .++.|.+||+.+++....................
T Consensus 196 ~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (331)
T 3u4y_A 196 IGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFG 274 (331)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTT
T ss_pred CCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccc
Confidence 588999999999888 777764 46678999999999776554 5788999999876442111100010000111112
Q ss_pred eeEEEEccCCCEEEEEeC-CccEEEEEccCCC
Q 012699 389 RHEMALDVNGRRLLVTSG-SVRAPIYQVRGHA 419 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~ 419 (458)
...++|+|||++|++++. ++.|.+||+....
T Consensus 275 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 275 ANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 256899999999887766 5699999998753
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1.1e-24 Score=195.93 Aligned_cols=271 Identities=9% Similarity=0.102 Sum_probs=181.8
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCC-CcEEEEecC--CCCCCCccccccCCCceEEEEEecCCCeEEEE-EcCCCcEEEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASVD-GTVRIWTYD--SSTPASRNATIYCGTEIMSLEWECKSDRLLLI-GTADGGIKAWN 220 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~i~~wd 220 (458)
.|...+.+++|+|++++|++++.+ +.|++|++. +++... .........+..++|+ ++++++++ +..++.|.+||
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-ccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEE
Confidence 466788999999999999888876 999999997 444321 1222233478899999 55665554 45588999999
Q ss_pred cC---CCceeeeccCCCCCCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCC-CceeE----EeecCC
Q 012699 221 VD---AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKT-WKAMT----VLPLGE 291 (458)
Q Consensus 221 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~----~~~~~~ 291 (458)
+. ..+....+... ..+..++|+|+++.+++++ .+ +.|.+||+.+ ++... .+.. .
T Consensus 113 ~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-------------~~v~~~d~~~~~~~~~~~~~~~~~-~ 175 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGL---DGCHSANISPDNRTLWVPALKQ-------------DRICLFTVSDDGHLVAQDPAEVTT-V 175 (343)
T ss_dssp EETTEEEEEEEEECCC---TTBCCCEECTTSSEEEEEEGGG-------------TEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred CCCCccccccccccCC---CCceEEEECCCCCEEEEecCCC-------------CEEEEEEecCCCceeeeccccccc-C
Confidence 94 33344443332 4588999999999888776 44 5999999987 55433 2222 2
Q ss_pred CCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC--Cce--eeeee---CC---CCCeEEEEEcCCCCEEE-EecCCCeE
Q 012699 292 DPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA--GLQ--ITGWP---AH---DSAISSILFGPDETSIF-SLGSDGKI 359 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~--~~~--~~~~~---~~---~~~v~~~~~~~~~~~l~-~~~~dg~i 359 (458)
....+..++|+|+++++++++ .++.|.+||+.. ++. ...+. .. ...+..++|+|++++|+ +...++.|
T Consensus 176 ~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i 255 (343)
T 1ri6_A 176 EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLI 255 (343)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEE
Confidence 234688999999999776555 789999999953 332 22222 11 23567899999998877 55579999
Q ss_pred EEEeccCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEcc--CCCc-ccccCCCCCcEEEE
Q 012699 360 IEWSLQNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVR--GHAS-GMRTLPHGAAITTV 434 (458)
Q Consensus 360 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~--~~~~-~~~~~~h~~~v~~~ 434 (458)
.+||+.... ....... . .....+..++|+|+|++|++++ .++.+.+|+++ ++.. ............++
T Consensus 256 ~v~d~~~~~~~~~~~~~---~----~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i 328 (343)
T 1ri6_A 256 TVFSVSEDGSVLSKEGF---Q----PTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWV 328 (343)
T ss_dssp EEEEECTTSCCEEEEEE---E----ECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEE
T ss_pred EEEEEcCCCCceEEeee---e----cCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeE
Confidence 999998321 1111100 0 0112277899999999999888 57999999665 3321 11111223456777
Q ss_pred EECCCCC
Q 012699 435 DWHPTLP 441 (458)
Q Consensus 435 ~~~~~~~ 441 (458)
+|.|+.+
T Consensus 329 ~~~~~~~ 335 (343)
T 1ri6_A 329 VVNAHEG 335 (343)
T ss_dssp EEEEEC-
T ss_pred EEEcccC
Confidence 8877654
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=8.4e-25 Score=196.28 Aligned_cols=278 Identities=11% Similarity=0.088 Sum_probs=199.0
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCC---ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC-
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGT---EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA- 235 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~- 235 (458)
++|++++.+++|.+||+.+++... ...... .+..++|+|.+..+++++..++.|.+||+.+++....+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK---VITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE---EEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE---EEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence 478999999999999998876543 222233 5788999954445567777789999999999988776654320
Q ss_pred --CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec
Q 012699 236 --FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV 313 (458)
Q Consensus 236 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 313 (458)
...+..++++|+++.++++.......... ....++.|.+||+.+++....+... ..+.+++|+|++++|+++
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~-~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTH-FEVQPTRVALYDAETLSRRKAFEAP---RQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSC-EEECCCEEEEEETTTTEEEEEEECC---SSCCCEEECTTSSCEEEE--
T ss_pred cccccccceEECCCCCEEEEEeccccccccc-ccccCceEEEEECCCCcEEEEEeCC---CCcceeEECCCCCEEEEe--
Confidence 11567899999999888775210000000 0001259999999998888777642 346788999999988887
Q ss_pred CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-C-----------------------eEEEEeccCCCe
Q 012699 314 DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD-G-----------------------KIIEWSLQNQGQ 369 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~iwd~~~~~~ 369 (458)
++.|++||+.+++.+..+..+... ..+.|+|+++.++..+.+ + .|.+||+.+.+.
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 231 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM 231 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence 688999999999888777654411 123789999877655433 2 468999987654
Q ss_pred eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 370 VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
..... ..+...+..++|+|+|++++++ ++.|++||+.+.+....+. ....+.+++|+|++++|++++.|
T Consensus 232 ~~~~~--------~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 300 (337)
T 1pby_B 232 AMREV--------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGAL 300 (337)
T ss_dssp EEEEE--------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBS
T ss_pred eEeec--------CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec-CCCceeeEEECCCCCEEEEEcCC
Confidence 31111 1233457889999999999988 7899999998875443333 33567899999999999888999
Q ss_pred CcEEEEeCC
Q 012699 450 HSVQVMSLS 458 (458)
Q Consensus 450 g~v~iw~l~ 458 (458)
+.|++||+.
T Consensus 301 ~~i~v~d~~ 309 (337)
T 1pby_B 301 GDLAAYDAE 309 (337)
T ss_dssp SEEEEEETT
T ss_pred CcEEEEECc
Confidence 999999973
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=2.2e-24 Score=213.28 Aligned_cols=252 Identities=15% Similarity=0.165 Sum_probs=179.8
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC-----CCCCCccccccCCC--------------ceEEEEEecCCCe
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-----STPASRNATIYCGT--------------EIMSLEWECKSDR 205 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~ 205 (458)
.|...+.+++|+|||++|+++ .|+.|++||+.+ ++.... ...... .+.++.|+ ++++
T Consensus 118 ~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~ 193 (706)
T 2z3z_A 118 DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQREFGIEKGTFWS-PKGS 193 (706)
T ss_dssp CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSS
T ss_pred CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhhcCCCceEEEC-CCCC
Confidence 345567788999999999985 689999999987 654321 111112 14789999 7788
Q ss_pred EEEEEc---------------------------------CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEE
Q 012699 206 LLLIGT---------------------------------ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV 252 (458)
Q Consensus 206 ~l~~~~---------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 252 (458)
+|++++ .+..|.+||+.+++.........+...+..++|+|+++.++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 888876 44689999999988655443333445789999999999988
Q ss_pred EeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC---CcEEEEEEcc--CCCEEEEEecCCeEEEEeCC-CCc
Q 012699 253 SAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP---PAITSLCFNH--NGKILAASAVDGMIHMFDMS-AGL 326 (458)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~i~v~d~~-~~~ 326 (458)
+++.++.. ....|.+||+.+++....+....+. ..+..++|+| +|++++++..+|.+++|++. ++.
T Consensus 274 ~~~~~~~~--------~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~ 345 (706)
T 2z3z_A 274 VAEVNRAQ--------NECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGR 345 (706)
T ss_dssp EEEECTTS--------CEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSC
T ss_pred EEEeCCCC--------CeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCC
Confidence 87655311 1248999999998433333211121 1246789999 99999999999999999876 567
Q ss_pred eeeeeeCCCCCeEE-EEEcCCCCEEEEecC-CC----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 327 QITGWPAHDSAISS-ILFGPDETSIFSLGS-DG----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 327 ~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
.+..+..|...+.. ++|+|+++.|+.++. ++ .|..||+.+... . .+ .+...+..++|||||++
T Consensus 346 ~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~------~l----~~~~~~~~~~~spdg~~ 414 (706)
T 2z3z_A 346 LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-K------DL----TPESGMHRTQLSPDGSA 414 (706)
T ss_dssp EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-E------ES----CCSSSEEEEEECTTSSE
T ss_pred EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-e------ec----cCCCceEEEEECCCCCE
Confidence 77788888888877 799999988765544 44 566667665421 1 11 13445889999999999
Q ss_pred EEEEeCC----ccEEEEEccCCC
Q 012699 401 LLVTSGS----VRAPIYQVRGHA 419 (458)
Q Consensus 401 l~~~~~~----~~i~i~~~~~~~ 419 (458)
|+....+ +.+++||+.+++
T Consensus 415 l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEecCCCCCcEEEEEECCCCe
Confidence 8877543 569999998765
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2e-24 Score=190.00 Aligned_cols=260 Identities=12% Similarity=0.139 Sum_probs=191.4
Q ss_pred EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC-CceeeeccCCCCCCceeee
Q 012699 164 SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA-KRVVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 164 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 242 (458)
+++.|++|++||+.+++.. ....+...+.+++|+ +++++|++++ ++.|.+||+.+ ++.......+ ....+.++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~---~~~~~~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~ 90 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR---VVWQTPELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-ATICNNDH 90 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE---EEEEESSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-CCCBCSCC
T ss_pred CCCcceeEEEEeCCCCcee---eeccCCcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-ccccccce
Confidence 3467899999999877643 234467789999999 6778888876 78999999999 7766554433 22568899
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE-EEecCCeEEEEe
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA-ASAVDGMIHMFD 321 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d 321 (458)
+|+|+++.++++..+.. +...|..++..+++. ..+. .+ ..+..++|+|++++|+ ++..++.+.+|+
T Consensus 91 ~~spdg~~l~~~~~~~~---------~~~~l~~~~~~~~~~-~~~~--~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 91 GISPDGALYAISDKVEF---------GKSAIYLLPSTGGTP-RLMT--KN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp EECTTSSEEEEEECTTT---------SSCEEEEEETTCCCC-EECC--SS-SSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred EECCCCCEEEEEEeCCC---------CcceEEEEECCCCce-EEee--cC-CCccceEECCCCCEEEEEECCCCceEEEE
Confidence 99999999998884321 113666667666553 3332 22 3488999999999887 677899999998
Q ss_pred CCC-CceeeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC
Q 012699 322 MSA-GLQITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR 399 (458)
Q Consensus 322 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 399 (458)
++. +.....+..+...+.+++|+|++++|+.++ .++.+++|++......... ...+...+..++|+|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 158 MDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER--------ITDSAYGDWFPHPSPSGD 229 (297)
T ss_dssp EETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE--------CCCCSEEEEEEEECTTSS
T ss_pred EECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE--------EecCCcccCCeEECCCCC
Confidence 642 334456677888999999999999887665 5899999998733222111 123445788899999999
Q ss_pred EEEEEeCC-----------ccEEEEEccCCCcc--cccCCCCCcEEEEEECCCCCeEEEecCCC
Q 012699 400 RLLVTSGS-----------VRAPIYQVRGHASG--MRTLPHGAAITTVDWHPTLPMFLTGSADH 450 (458)
Q Consensus 400 ~l~~~~~~-----------~~i~i~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 450 (458)
+|++++.+ +.|++||+.+.+.. ....+|...+.+++|+|+++.|++++.|.
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99988865 56999999887543 22337888999999999999888877653
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.2e-23 Score=189.65 Aligned_cols=277 Identities=13% Similarity=0.130 Sum_probs=180.4
Q ss_pred CCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcC---CCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699 167 VDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTA---DGGIKAWNVDAKRVVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 242 (458)
.++.|.+|+++...... ......+...+..++|+ ++++ |++++. ++.|.+|++.+++.........+...+..+
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~s-pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALS-AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEEC-TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEc-cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 35668888776432211 11223344667789999 5677 554443 689999999877632221111122467889
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-Cc--eeEEeecCCC-------CCcEEEEEEccCCCEEEEEe
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WK--AMTVLPLGED-------PPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~--~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~ 312 (458)
+++|+++.+++++... +.+.+|++.. +. .+..+...+. ...+.+++|+|+|+++++..
T Consensus 92 a~spdg~~l~~~~~~~------------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 92 AVDEARQLVYSANYHK------------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEETTTTEEEEEETTT------------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred EECCCCCEEEEEeCCC------------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 9999999888887433 5999999963 22 2333322211 12488999999999666666
Q ss_pred cCCeEEEEeCC-CCcee--eeeeCC-CCCeEEEEEcCCCCEEEE-ecCCCeEEEEeccCC-CeeEEeecCCcccCCCCCC
Q 012699 313 VDGMIHMFDMS-AGLQI--TGWPAH-DSAISSILFGPDETSIFS-LGSDGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSK 386 (458)
Q Consensus 313 ~dg~i~v~d~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 386 (458)
.++.|++|++. +++.. ..+..+ ...+..++|+|+|+++++ ...++.+.+|++... +..................
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 78899999998 45432 222222 336788999999996665 566899999999852 2221111111111111222
Q ss_pred CceeEEEEccCCCEEEEE-eCCccEEEEEccCC---CcccccCCCCCcEEEEEECCCCCeEEEecC-CCcEEEEeC
Q 012699 387 SCRHEMALDVNGRRLLVT-SGSVRAPIYQVRGH---ASGMRTLPHGAAITTVDWHPTLPMFLTGSA-DHSVQVMSL 457 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~-~~~~~i~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-dg~v~iw~l 457 (458)
..+..++|+|||++|+++ ..++.|.+|++... ........+...+.+++|+|||++|++++. ++.|.+|++
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEE
Confidence 568899999999988654 45899999999733 222223345667899999999998887765 589999965
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=1.5e-24 Score=209.47 Aligned_cols=269 Identities=10% Similarity=0.076 Sum_probs=193.8
Q ss_pred CCCeEEEEeCCCCCEEEEEeC-CCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcC---CCcEEEEEc
Q 012699 147 TSPISCCRFSSSGNNIASASV-DGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTA---DGGIKAWNV 221 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~---dg~i~~wd~ 221 (458)
..+|++++|+|||++||+++. ||+++||++++++... ...+. ..+..++|+ ++ ++++++.. +....+|.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---lt~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---LNREPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---CCSSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---eecccccccccccCC-CC-eEEEEeccCCCCcceEEEEE
Confidence 567999999999999999887 9999999986654422 22333 578999999 55 77777765 455666655
Q ss_pred CC--CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 222 DA--KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 222 ~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
.. ......+... ......+|+|+++.++..+... +.+.+||+.+++........ . .++
T Consensus 96 ~~~~~g~~~~l~~~---~~~~~~~~s~dg~~~~~~s~~~------------~~~~l~d~~~g~~~~l~~~~---~--~~~ 155 (582)
T 3o4h_A 96 NTSRPGEEQRLEAV---KPMRILSGVDTGEAVVFTGATE------------DRVALYALDGGGLRELARLP---G--FGF 155 (582)
T ss_dssp ETTSTTCCEECTTS---CSBEEEEEEECSSCEEEEEECS------------SCEEEEEEETTEEEEEEEES---S--CEE
T ss_pred eccCCCccccccCC---CCceeeeeCCCCCeEEEEecCC------------CCceEEEccCCcEEEeecCC---C--ceE
Confidence 43 2222233322 2344568888886433322221 25669999988766554321 2 789
Q ss_pred EEccCCCEEEEEecC----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC--eEEEEeccCCCeeEEe
Q 012699 300 CFNHNGKILAASAVD----GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG--KIIEWSLQNQGQVLWT 373 (458)
Q Consensus 300 ~~~~~~~~l~~~~~d----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 373 (458)
+|+|||++|++++.+ +.|++||+.+++.. .+..|...+..++|+|||++|+++..++ .|++||+.++... ..
T Consensus 156 ~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~ 233 (582)
T 3o4h_A 156 VSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL 233 (582)
T ss_dssp EEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC
T ss_pred EECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec
Confidence 999999999988877 78999999887754 6678888999999999999999888888 8999999876543 11
Q ss_pred ecCCcccCCCCCCCceeEEE--------EccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEE
Q 012699 374 RNCSRFCDPESSKSCRHEMA--------LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~--------~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 445 (458)
..+...+..++ |+|||+++++++.++.+++|++ ++... .+.+.+.+++|+ +++++++
T Consensus 234 ---------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 234 ---------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp ---------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred ---------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence 12334445555 9999988899999999999999 32222 344679999999 9998888
Q ss_pred ecCCCc---EEEEeC
Q 012699 446 GSADHS---VQVMSL 457 (458)
Q Consensus 446 ~~~dg~---v~iw~l 457 (458)
++.+.. +.+|++
T Consensus 299 ~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 299 HTSLSTPPRIVSLPS 313 (582)
T ss_dssp EEETTEEEEEEEETT
T ss_pred EcCCCCCCeEEEEcC
Confidence 877743 666654
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=1.2e-23 Score=188.70 Aligned_cols=273 Identities=8% Similarity=0.014 Sum_probs=198.3
Q ss_pred eeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeec-cCCC-CeEEEEeCCCCCE
Q 012699 84 RFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFL-GHTS-PISCCRFSSSGNN 161 (458)
Q Consensus 84 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~h~~-~v~~~~~~~~~~~ 161 (458)
+++++++.++.+.+|++.... .+..+. ++.. .+.+++|+|++++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~s~dg~~ 47 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMA----------------------------------VDKVITIADAGPTPMVPMVAPGGRI 47 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTE----------------------------------EEEEEECTTCTTCCCCEEECTTSSE
T ss_pred cEEEEcCCCCeEEEEECCCCc----------------------------------EEEEEEcCCCCCCccceEEcCCCCE
Confidence 578889999999999975422 222222 2222 4778999999987
Q ss_pred E-EEEeCCCcEEEEecCCCCCCCcccccc---CCCceEEEEEecCCCeEEEEEc------------CCCcEEEEEcCCCc
Q 012699 162 I-ASASVDGTVRIWTYDSSTPASRNATIY---CGTEIMSLEWECKSDRLLLIGT------------ADGGIKAWNVDAKR 225 (458)
Q Consensus 162 l-~s~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~ 225 (458)
+ +++..++.|.+||+.+++......... +...+..++|+ +++++++++. .++.|.+||+.+++
T Consensus 48 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 126 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126 (337)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE
T ss_pred EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCc
Confidence 6 556668899999998876543221111 01156788999 6777777775 57999999999988
Q ss_pred eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 226 VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 226 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
....+... ..+..++|+|+++.++++ + +.|.+||+.+++....+........ +.|+|++
T Consensus 127 ~~~~~~~~---~~~~~~~~s~dg~~l~~~--~-------------~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg 185 (337)
T 1pby_B 127 RRKAFEAP---RQITMLAWARDGSKLYGL--G-------------RDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDV 185 (337)
T ss_dssp EEEEEECC---SSCCCEEECTTSSCEEEE--S-------------SSEEEEETTTTEEEEEECSTTTTTT---TBCCCBC
T ss_pred EEEEEeCC---CCcceeEECCCCCEEEEe--C-------------CeEEEEECCCCcEeeeeeccccCCC---ceeCCCc
Confidence 87766553 357789999999988877 2 4899999999988877764432222 3789998
Q ss_pred CEEEEEecCC------------------------eEEEEeCCCCcee-eeeeCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 306 KILAASAVDG------------------------MIHMFDMSAGLQI-TGWPAHDSAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 306 ~~l~~~~~dg------------------------~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
+.+++.+..+ .|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|.
T Consensus 186 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~ 263 (337)
T 1pby_B 186 LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLE 263 (337)
T ss_dssp CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEE
T ss_pred cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEE
Confidence 8765544322 4789999988764 2334566778899999999999988 79999
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~ 424 (458)
+||+.+.+...... ....+..++|+|+|++|++++.++.|++||+.+.+....+
T Consensus 264 ~~d~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 264 SFDLEKNASIKRVP----------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp EEETTTTEEEEEEE----------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCcCcceec----------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 99998764433221 1234678999999999999988999999999887654443
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.93 E-value=1.4e-23 Score=202.61 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=168.8
Q ss_pred CCeEEEEeCCCCCEEEEEeC---CCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 148 SPISCCRFSSSGNNIASASV---DGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
..+..++|+|| +.+++++. +...++|.+.. ..... ...........+|+|.....+++...++.+.+||+.
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~ 140 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD 140 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc---cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc
Confidence 57889999999 77777765 45567766544 22211 112222344667885554545555555566699999
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
+++........ . .+++|+|+|+.+++++.+.. +.+.|++||+.+++... + ..+...+..++|+
T Consensus 141 ~g~~~~l~~~~---~--~~~~~spDG~~la~~~~~~~---------~~~~i~~~d~~~g~~~~-l--~~~~~~~~~~~~S 203 (582)
T 3o4h_A 141 GGGLRELARLP---G--FGFVSDIRGDLIAGLGFFGG---------GRVSLFTSNLSSGGLRV-F--DSGEGSFSSASIS 203 (582)
T ss_dssp TTEEEEEEEES---S--CEEEEEEETTEEEEEEEEET---------TEEEEEEEETTTCCCEE-E--CCSSCEEEEEEEC
T ss_pred CCcEEEeecCC---C--ceEEECCCCCEEEEEEEcCC---------CCeEEEEEcCCCCCceE-e--ecCCCccccceEC
Confidence 98765544322 1 78999999999998776521 11379999999877653 3 3566778999999
Q ss_pred cCCCEEEEEecCC--eEEEEeCCCCceeeeeeCCCCCeEEEE--------EcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 303 HNGKILAASAVDG--MIHMFDMSAGLQITGWPAHDSAISSIL--------FGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 303 ~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
|||++|+++..++ .|++||+.+++.. .+..|...+..++ |+|||..+++++.|+.+++|++ + ....
T Consensus 204 pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~~~~ 279 (582)
T 3o4h_A 204 PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--G-ERVE 279 (582)
T ss_dssp TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-EEEC
T ss_pred CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-Ceec
Confidence 9999999888888 8999999988877 7777877777777 9999988899999999999999 2 2211
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC---ccEEEEEccC
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS---VRAPIYQVRG 417 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~---~~i~i~~~~~ 417 (458)
.....+..++|+ +++++++++.+ ..+++++..+
T Consensus 280 -----------~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 280 -----------APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp -----------CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred -----------cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 122568899999 99999888776 3577777654
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=1.8e-23 Score=188.60 Aligned_cols=279 Identities=10% Similarity=0.023 Sum_probs=188.2
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCC--ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGT--EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
.+++++++.++++++.+++|++||+.+++.... ...+. .+..++|+|.+..++++...++.|.+||+.+++....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~ 80 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---CVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 80 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---EECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE---EecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence 356788888999999999999999988765432 22223 5788999944334556667789999999999988776
Q ss_pred ccCCCC----CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 230 LNTTDA----FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 230 ~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
+..... ...+..++++|+++.++++..+..... ..+....+.|.+||+.+++....+....++..+.+++|+|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN-DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 159 (349)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS-SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred EEcccccccccccccceEECCCCCEEEEEcccccccc-cccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence 654321 123778999999999998875410000 001111259999999885433222111233457889999999
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCC------------------------CeEEEEEcCCCCE-----------E
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDS------------------------AISSILFGPDETS-----------I 350 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~-----------l 350 (458)
+ +++++ +.|++||+.+++.+..+..+.. ....+++++++.. +
T Consensus 160 ~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 66554 3499999999888777654320 2345666655421 1
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA 429 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~ 429 (458)
.....++.+++|++.. ....+..++|+| +|++++++ ++.|++||+.+.+....+. ...
T Consensus 237 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-~~~ 295 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFAD------------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDH 295 (349)
T ss_dssp EEETTTCCEEEEEEEE------------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-CSS
T ss_pred EEeccCCcEEeccccc------------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-CCC
Confidence 1223344444444421 334578899999 99999988 8899999998875443332 334
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+.+++|+|++++|++++.++.|++||++
T Consensus 296 ~~~~~~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 296 TYYCVAFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp CCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred CccceEECCCCCEEEEecCCCeEEEEecc
Confidence 57899999999988888889999999973
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.1e-23 Score=185.25 Aligned_cols=237 Identities=9% Similarity=0.047 Sum_probs=171.9
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCC-CCCCCccccccCCCceEEEEEecCCCeEEEEEc--CCCcEEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDS-STPASRNATIYCGTEIMSLEWECKSDRLLLIGT--ADGGIKA 218 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~~ 218 (458)
.+..|...|.+++|+|++++|++++ ++.|++||+.+ ++... .........+.+++|+ +++++|++++ .++...+
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGIS-PDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEEC-CCCCEEEEEEeCCCCcceE
Confidence 3446788999999999999999987 78999999988 65432 1112223678899999 6778888887 3345555
Q ss_pred E--EcCCCceeeeccCCCCCCceeeeeecCCCCeEE-EeecccCCCCcceeeccceeEEEEEC--CCCceeEEeecCCCC
Q 012699 219 W--NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFV-SAAASRRYGSSNIYSWGFASLTVWNM--KTWKAMTVLPLGEDP 293 (458)
Q Consensus 219 w--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~i~d~--~~~~~~~~~~~~~~~ 293 (458)
| +..+++. ..+... ..+..++|+|+++.++ ++..+ +.+++|++ .+++. .. +..+.
T Consensus 113 ~~~~~~~~~~-~~~~~~---~~~~~~~~spdg~~l~~~~~~~-------------~~~~l~~~~~~~~~~-~~--~~~~~ 172 (297)
T 2ojh_A 113 YLLPSTGGTP-RLMTKN---LPSYWHGWSPDGKSFTYCGIRD-------------QVFDIYSMDIDSGVE-TR--LTHGE 172 (297)
T ss_dssp EEEETTCCCC-EECCSS---SSEEEEEECTTSSEEEEEEEET-------------TEEEEEEEETTTCCE-EE--CCCSS
T ss_pred EEEECCCCce-EEeecC---CCccceEECCCCCEEEEEECCC-------------CceEEEEEECCCCcc-eE--cccCC
Confidence 5 4455443 333332 3488899999999887 45444 47888885 34333 22 33556
Q ss_pred CcEEEEEEccCCCEEEEEe-cCCeEEEEeCC-CCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC-----------CeEE
Q 012699 294 PAITSLCFNHNGKILAASA-VDGMIHMFDMS-AGLQITGWPAHDSAISSILFGPDETSIFSLGSD-----------GKII 360 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~ 360 (458)
..+.+++|+|++++|++++ .++.+++|++. .+..+..+..|...+..++|+|++++|++++.+ +.|.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 7799999999999888766 58899999986 466677788888899999999999999988776 5699
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 408 (458)
+||+.+.+..... ....+...+..++|+|+|++|++++.+.
T Consensus 253 ~~d~~~~~~~~~~-------~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLF-------DLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEE-------EEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeee-------ccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999876432211 1112445678899999999999887653
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=4e-22 Score=180.60 Aligned_cols=279 Identities=13% Similarity=0.116 Sum_probs=180.6
Q ss_pred CCEEEEEe----CCCcEEEEecCC--CCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----CcEEEEEcCC--Cce
Q 012699 159 GNNIASAS----VDGTVRIWTYDS--STPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----GGIKAWNVDA--KRV 226 (458)
Q Consensus 159 ~~~l~s~~----~dg~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~--~~~ 226 (458)
..+++.|+ .++.|.+|+++. ++... .... +...+..++|+ +++++|++++.+ +.+.+|++.. ++.
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~-~~~~-~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLP-LSDA-EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEE-EEEE-ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEE-eecc-cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 33455553 457899998754 33322 1222 55667889999 677888888775 7999999876 443
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE----EeecCC--------CCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT----VLPLGE--------DPP 294 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~----~~~~~~--------~~~ 294 (458)
...............+++ +++.++++.... +.+.+|++.....+. .....+ +..
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~------------~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~ 155 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSG------------GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMP 155 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTT------------TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSC
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCC------------CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCC
Confidence 222221112235666777 777777766433 599999997543322 111111 123
Q ss_pred cEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCce------e-------eeeeCCCCCeEEEEEcCCCCEEEEec-CCCeE
Q 012699 295 AITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQ------I-------TGWPAHDSAISSILFGPDETSIFSLG-SDGKI 359 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 359 (458)
.+.+++|+|+|+++++++ .++.|.+|++..... + .....+...+..++|+|+|+++++++ .++.|
T Consensus 156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence 468899999999776655 478999998875331 1 11223455678999999999887766 68999
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--ccEEEEEccC--CCc-ccccCCCCCcEEEE
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--VRAPIYQVRG--HAS-GMRTLPHGAAITTV 434 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--~~i~i~~~~~--~~~-~~~~~~h~~~v~~~ 434 (458)
.+|++.++.... ... ......+...+..++|+|||++|+++..+ +.|.+|++.. +.. ..........+.++
T Consensus 236 ~v~~~~~g~~~~-~~~---~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~ 311 (361)
T 3scy_A 236 IAFRYADGMLDE-IQT---VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF 311 (361)
T ss_dssp EEEEEETTEEEE-EEE---EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEE
T ss_pred EEEEecCCceEE-eEE---EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceE
Confidence 999998543211 111 11112233456899999999999877765 8999999962 221 11111224578899
Q ss_pred EECCCCCeEEEec-CCCcEEEEeCC
Q 012699 435 DWHPTLPMFLTGS-ADHSVQVMSLS 458 (458)
Q Consensus 435 ~~~~~~~~l~s~~-~dg~v~iw~l~ 458 (458)
+|+|+|++|++++ .++.|.+|+++
T Consensus 312 ~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 312 IITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEECCCCCEEEEEEE
Confidence 9999999888776 67899998653
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.92 E-value=1.9e-21 Score=176.20 Aligned_cols=269 Identities=13% Similarity=0.169 Sum_probs=176.6
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCC----CcEEEEecCCC--CCCCccccccCCCceEEEEEecCCCeEEEEE-cCCCcEEE
Q 012699 146 HTSPISCCRFSSSGNNIASASVD----GTVRIWTYDSS--TPASRNATIYCGTEIMSLEWECKSDRLLLIG-TADGGIKA 218 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~d----g~v~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~ 218 (458)
|...+..++|+|+|++|++++.+ +.|.+|++... .................+++ ++++|+++ ..++.+.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence 66778889999999999998876 79999998763 22211111223445666776 45555554 46889999
Q ss_pred EEcCCCceeeecc------C------CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce---
Q 012699 219 WNVDAKRVVCDLN------T------TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--- 283 (458)
Q Consensus 219 wd~~~~~~~~~~~------~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--- 283 (458)
|++.....+..+. . ......+..++|+|+++.++++.... +.+.+|++.....
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~------------~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT------------DQIHKFNINPNANADN 192 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTCCTTT
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC------------CEEEEEEEcCCCCccc
Confidence 9997644332211 0 01112357899999999776665432 4999998875432
Q ss_pred ---e------EEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCce--eeee---eCCCCCeEEEEEcCCCC
Q 012699 284 ---M------TVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQ--ITGW---PAHDSAISSILFGPDET 348 (458)
Q Consensus 284 ---~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~--~~~~---~~~~~~v~~~~~~~~~~ 348 (458)
+ ..... .....+..++|+|+|+++++++ .++.|.+||+.+++. +..+ ..+......++|+|+|+
T Consensus 193 ~~~l~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~ 271 (361)
T 3scy_A 193 KEKFLTKGTPEAFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGK 271 (361)
T ss_dssp CCCCEEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSS
T ss_pred ccceeecccccceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCC
Confidence 1 22222 2334578999999999888777 589999999987644 2222 23345578999999999
Q ss_pred EEEEecC--CCeEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEcc--CCCccc
Q 012699 349 SIFSLGS--DGKIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVR--GHASGM 422 (458)
Q Consensus 349 ~l~~~~~--dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~--~~~~~~ 422 (458)
+|+++.. ++.|.+|++... +........ .. ...+..++|+|||++|++++ .++.+.+|+++ +++...
T Consensus 272 ~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~------~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 272 YLYASNRLKADGVAIFKVDETNGTLTKVGYQ------LT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEEEECSSSCEEEEEEECTTTCCEEEEEEE------EC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEECCCCCCEEEEEEEcCCCCcEEEeeEe------cC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 8876655 489999999622 221111110 01 34567899999999999888 56889997665 332211
Q ss_pred cc-CCCCCcEEEEEEC
Q 012699 423 RT-LPHGAAITTVDWH 437 (458)
Q Consensus 423 ~~-~~h~~~v~~~~~~ 437 (458)
.. ..+...+.|+.|.
T Consensus 345 ~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 345 IKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CSCCEECSSEEEEEEE
T ss_pred cceeeeCCCCeEEEEc
Confidence 11 1244578888885
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.3e-21 Score=176.73 Aligned_cols=245 Identities=11% Similarity=0.125 Sum_probs=187.8
Q ss_pred CCceEEEEEecCCCeEEEEEcC-------CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCc
Q 012699 191 GTEIMSLEWECKSDRLLLIGTA-------DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS 263 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
...+..++|+ ++++++++++. ++.|.+||..+++....+... ..+..++++|+++.++.+....
T Consensus 40 ~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~v~~~~~----- 110 (353)
T 3vgz_A 40 GKGAYEMAYS-QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---LKPFGATINNTTQTLWFGNTVN----- 110 (353)
T ss_dssp ESSEEEEEEE-TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---SCCCSEEEETTTTEEEEEETTT-----
T ss_pred ccCccceEEC-CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---CCcceEEECCCCCEEEEEecCC-----
Confidence 4567889999 56666666553 568999999999988777654 3477899999999766655433
Q ss_pred ceeeccceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCCEEEEEe--cCCeEEEEeCCCCceeeeeeCC
Q 012699 264 NIYSWGFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGKILAASA--VDGMIHMFDMSAGLQITGWPAH 334 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~ 334 (458)
+.|.+||..+++....+...... ..+.+++|+|+++++++++ .++.|.+||+.+++.+..+..+
T Consensus 111 -------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 111 -------SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp -------TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred -------CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 59999999999988887753321 1378899999999888776 4788999999999988888766
Q ss_pred CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEE
Q 012699 335 DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIY 413 (458)
Q Consensus 335 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~ 413 (458)
...+.+++|+|+++++++++.++.|.+||+.+.+....... ....+...+..++|+|+|+++++++.+ +.|.+|
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~ 258 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKL-----LDDGKEHFFINISLDTARQRAFITDSKAAEVLVV 258 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEEC-----CCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEE
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEc-----CCCCCCcccceEEECCCCCEEEEEeCCCCEEEEE
Confidence 67788999999999999999999999999987654432211 111234567889999999988877764 899999
Q ss_pred EccCCCcccccCCCCCcEEEEEECCCCCeEE-EecCCCcEEEEeCC
Q 012699 414 QVRGHASGMRTLPHGAAITTVDWHPTLPMFL-TGSADHSVQVMSLS 458 (458)
Q Consensus 414 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iw~l~ 458 (458)
|..+.+....+.... ...++|+|++++++ +...++.|.+||+.
T Consensus 259 d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 259 DTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp ETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 998876544443222 25799999999554 55579999999973
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=200.15 Aligned_cols=292 Identities=11% Similarity=-0.006 Sum_probs=193.6
Q ss_pred CeEEEEeCCCCCEEEEEeC---------CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 149 PISCCRFSSSGNNIASASV---------DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~---------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
.|.+++|||||++|++++. +++|++||+.+++...... ....+..++|+ ++++.|+.+. ++.|++|
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~---l~~~~~~~~~S-PDG~~la~~~-~~~i~~~ 135 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE---LPRPIQYLCWS-PVGSKLAYVY-QNNIYLK 135 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC---CCSSBCCEEEC-SSTTCEEEEE-TTEEEEE
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee---cCcccccceEC-CCCCEEEEEE-CCeEEEE
Confidence 4889999999999998876 7899999998876521011 12468889999 6777777775 7899999
Q ss_pred EcCCCceeeeccCCCCCC-----------------ceeeeeecCCCCeEEEeecccCCCCcc-e----------------
Q 012699 220 NVDAKRVVCDLNTTDAFP-----------------SVLDLKCSPVEPIFVSAAASRRYGSSN-I---------------- 265 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------- 265 (458)
|+.+++........ +.. ....+.|+|||+.|++++.+...-... +
T Consensus 136 ~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~y 214 (719)
T 1z68_A 136 QRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPY 214 (719)
T ss_dssp SSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEEC
T ss_pred eCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecC
Confidence 99988765432221 111 124899999999999987653210000 0
Q ss_pred ----eeccceeEEEEECCCCcee--EEee----cCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEe----CCCCce
Q 012699 266 ----YSWGFASLTVWNMKTWKAM--TVLP----LGEDPPAITSLCFNHNGKILAASAVD----GMIHMFD----MSAGLQ 327 (458)
Q Consensus 266 ----~~~~~g~i~i~d~~~~~~~--~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d----~~~~~~ 327 (458)
.......|++||+.+++.. ..+. +..+...+..++|+||++++++.... ..|.+|| +.+++.
T Consensus 215 p~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 215 PKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp CBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 0012248999999987653 1111 12466678999999998777664432 2489999 877776
Q ss_pred eeee----eCCCCCeE-----EEEEcCCCCEEEE--ecCCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEE
Q 012699 328 ITGW----PAHDSAIS-----SILFGPDETSIFS--LGSDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 328 ~~~~----~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
...+ ..|...+. .++|+|||+.|+. ...+| .|.+||+.+... . .+ ......+..+.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~------~l---t~~~~~v~~~~~ 364 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-I------QI---TSGKWEAINIFR 364 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-E------EC---SCSSSCEEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-E------ec---ccCceEEEEEEE
Confidence 6555 46777776 8899999996554 44555 467777765431 1 11 122334667777
Q ss_pred ccCCCEEEEEeCC-----ccEEEEEccC--CC-ccccc----CCCCCcEEEEEECCCCCeEEE-ecCC--CcEEEEeC
Q 012699 395 DVNGRRLLVTSGS-----VRAPIYQVRG--HA-SGMRT----LPHGAAITTVDWHPTLPMFLT-GSAD--HSVQVMSL 457 (458)
Q Consensus 395 s~~g~~l~~~~~~-----~~i~i~~~~~--~~-~~~~~----~~h~~~v~~~~~~~~~~~l~s-~~~d--g~v~iw~l 457 (458)
+ +++.|+..+.+ +..++|.+.. +. ....+ .+|...+..+.|+|++++++. ++.+ ..+.+|++
T Consensus 365 ~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 365 V-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp E-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECS
T ss_pred E-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEEC
Confidence 7 88877776654 7788888764 21 11222 136677889999999997764 4333 45777775
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=3.4e-22 Score=180.07 Aligned_cols=250 Identities=13% Similarity=0.174 Sum_probs=167.0
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeC---CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CCCcEEEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASV---DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-ADGGIKAWN 220 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd 220 (458)
.+...+..++|+|+|+ |++++. ++.|.+|++.+++.........+...+..++|+ +++++|++++ .++.+.+|+
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD-EARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE-TTTTEEEEEETTTTEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEE
Confidence 3446677899999999 555544 689999999766533222223345678899999 6677666666 789999999
Q ss_pred cCC-Cc--eeeeccCCC-------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeEE--e
Q 012699 221 VDA-KR--VVCDLNTTD-------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMTV--L 287 (458)
Q Consensus 221 ~~~-~~--~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~~--~ 287 (458)
+.. +. .+..+.... ....+..++|+|+++++++...+ +.|.+|++. +++.... +
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-------------~~v~~~~~~~~g~~~~~~~~ 181 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-------------DKVYVYNVSDAGQLSEQSVL 181 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-------------TEEEEEEECTTSCEEEEEEE
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-------------CEEEEEEECCCCcEEEeeeE
Confidence 963 22 222222211 11247889999999944444334 499999998 4543322 2
Q ss_pred ecCCCCCcEEEEEEccCCCEEEE-EecCCeEEEEeCCC--Cce--eeeeeCCC------CCeEEEEEcCCCCEEE-EecC
Q 012699 288 PLGEDPPAITSLCFNHNGKILAA-SAVDGMIHMFDMSA--GLQ--ITGWPAHD------SAISSILFGPDETSIF-SLGS 355 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~v~d~~~--~~~--~~~~~~~~------~~v~~~~~~~~~~~l~-~~~~ 355 (458)
... ....+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+ +...
T Consensus 182 ~~~-~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 182 TME-AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp ECC-TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred EcC-CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 222 2235788999999997666 45678999999874 432 22333222 3588999999999874 5556
Q ss_pred CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEcc
Q 012699 356 DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVR 416 (458)
Q Consensus 356 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~ 416 (458)
++.|.+|++...+....... ...+...+..++|+|||++|++++.+ +.+.+|+++
T Consensus 261 ~~~v~v~~~~~~g~~~~~~~------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLIQQ------ISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTEEEEEEECGGGCEEEEEE------EECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCcEEEeEE------EecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 89999999974332221111 11223457889999999999988865 899999664
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2e-21 Score=179.28 Aligned_cols=291 Identities=14% Similarity=0.119 Sum_probs=189.2
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--------C-----CccccccCCCceEEEEEecCCCeEEE----E
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--------A-----SRNATIYCGTEIMSLEWECKSDRLLL----I 209 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------~-----~~~~~~~~~~~v~~~~~~~~~~~~l~----~ 209 (458)
...++.+++++++.++++++.|+ +++|+...... . .......+...|.+++|+ +++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALS-CDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEEC-TTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEc-CCCCEEEEEEec
Confidence 34688999999999999999888 89987532110 0 001122345679999999 6677888 7
Q ss_pred EcCCCcEEEEEcCCC--------ce---eeeccCCCCCCceeeeeecCC-CCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 210 GTADGGIKAWNVDAK--------RV---VCDLNTTDAFPSVLDLKCSPV-EPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 210 ~~~dg~i~~wd~~~~--------~~---~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
++.|+.|++||+.++ +. ...+.. |...|.+++|+|+ +..+++++.| |.|++||
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~las~s~D-------------g~v~iwD 178 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--AGGMVIDMKWNPTVPSMVAVCLAD-------------GSIAVLQ 178 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS--GGGSEEEEEECSSCTTEEEEEETT-------------SCEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCC--CCCceEEEEECCCCCCEEEEEECC-------------CeEEEEE
Confidence 888999999998765 22 222222 3468999999998 7889999888 5999999
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------CCCeEEEEEcCCCCEE
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------DSAISSILFGPDETSI 350 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l 350 (458)
++++...... ..|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.++
T Consensus 179 ~~~~~~~~~~--~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l 255 (434)
T 2oit_A 179 VTETVKVCAT--LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFA 255 (434)
T ss_dssp ESSSEEEEEE--ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEE
T ss_pred cCCCcceeec--cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEE
Confidence 9988554433 3466789999999999999999999999999998 5555555443 2379999999988776
Q ss_pred EEec-CCC------eEEEEeccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-ccEEEEEccCCC
Q 012699 351 FSLG-SDG------KIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-VRAPIYQVRGHA 419 (458)
Q Consensus 351 ~~~~-~dg------~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-~~i~i~~~~~~~ 419 (458)
++.+ .|| .+++|++++.+. ..+...............+...+..-++.+++++++.. +.|.+.......
T Consensus 256 ~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~ 335 (434)
T 2oit_A 256 IVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQ 335 (434)
T ss_dssp EEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTS
T ss_pred EEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCC
Confidence 5433 343 389999986532 22211111111000111122233344777777776653 344444432210
Q ss_pred -----------ccccc----CCCCCcEEEEEEC---------------CCCCeEEEecCCCcEEEEeC
Q 012699 420 -----------SGMRT----LPHGAAITTVDWH---------------PTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 420 -----------~~~~~----~~h~~~v~~~~~~---------------~~~~~l~s~~~dg~v~iw~l 457 (458)
....+ .+....+..+++. |-...|..-+.||.+..|.+
T Consensus 336 ~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~ 403 (434)
T 2oit_A 336 INWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM 403 (434)
T ss_dssp SCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred CccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence 00111 1123334444442 12357888889999999975
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=203.44 Aligned_cols=274 Identities=9% Similarity=0.063 Sum_probs=189.7
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC----CceEEEEEecCCCeEEEEEcC---------CCcEEE
Q 012699 152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG----TEIMSLEWECKSDRLLLIGTA---------DGGIKA 218 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~---------dg~i~~ 218 (458)
.++|+|+|+++++ +.|++|++||+.+++... ...+. ..+.+++|+ +++++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEE---EEccccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEE
Confidence 6799999965554 569999999999887542 11111 138899999 78888888765 689999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcE--
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAI-- 296 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i-- 296 (458)
||+.+++.+...... ..+..++|+|+|+.++.+.. +.|++||+.+++..... ..++...+
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~~--------------~~i~~~~~~~g~~~~l~-~~~~~~~v~~ 156 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVYQ--------------NNIYLKQRPGDPPFQIT-FNGRENKIFN 156 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEET--------------TEEEEESSTTSCCEECC-CCCBTTTEEE
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEEC--------------CeEEEEeCCCCCcEEEe-cCCCcCCeEc
Confidence 999998863211111 45888999999999998864 39999999987765432 22332222
Q ss_pred ---------------EEEEEccCCCEEEEEecCC----------------------------------eEEEEeCCCCce
Q 012699 297 ---------------TSLCFNHNGKILAASAVDG----------------------------------MIHMFDMSAGLQ 327 (458)
Q Consensus 297 ---------------~~~~~~~~~~~l~~~~~dg----------------------------------~i~v~d~~~~~~ 327 (458)
.+++|+|||++|++++.|. .|++||+.+++.
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~ 236 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY 236 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence 4899999999999987652 789999988764
Q ss_pred e--------eeeeCCCCCeEEEEEcCCCCEEEEecCC----CeEEEEe----ccCCCeeEEeecCCcccC--CCCCCCce
Q 012699 328 I--------TGWPAHDSAISSILFGPDETSIFSLGSD----GKIIEWS----LQNQGQVLWTRNCSRFCD--PESSKSCR 389 (458)
Q Consensus 328 ~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~--~~~~~~~v 389 (458)
. ..+.+|...+..++|+||++++++.... ..|.+|| +.+++.. .... ...+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-------~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 237 VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-------KTQEHIEESRTGWA 309 (719)
T ss_dssp HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-------GGGEEEEECSSSCS
T ss_pred cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-------EEEecccccCCceE
Confidence 3 2234678889999999998777764322 2488888 6543211 1110 01233334
Q ss_pred e-----EEEEccCCCEEEE--EeCCc--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecC-----CCcEEEE
Q 012699 390 H-----EMALDVNGRRLLV--TSGSV--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSA-----DHSVQVM 455 (458)
Q Consensus 390 ~-----~~~~s~~g~~l~~--~~~~~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~v~iw 455 (458)
. .++|+|||+.|+. ...++ .|++|++.+.. ...+..+...+..+.++ +++.|+..+. ++.+++|
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 4 7899999997665 33444 57777877654 34455566678888777 7776665554 4889999
Q ss_pred eC
Q 012699 456 SL 457 (458)
Q Consensus 456 ~l 457 (458)
.+
T Consensus 388 ~~ 389 (719)
T 1z68_A 388 RI 389 (719)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.90 E-value=3.7e-21 Score=174.28 Aligned_cols=288 Identities=9% Similarity=0.079 Sum_probs=181.6
Q ss_pred EEEEeCC--CcEEEEecC--CCCCCCccccc--cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC-CCceeeeccCCC
Q 012699 162 IASASVD--GTVRIWTYD--SSTPASRNATI--YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD-AKRVVCDLNTTD 234 (458)
Q Consensus 162 l~s~~~d--g~v~iwd~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~ 234 (458)
++.|+.. +.|.+|+++ +++... .... .....+..++|+ +++++|++++.+ .|.+|++. +++.........
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~-~~~~~~~~~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKL-IKRTEIPQDEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEE-EEEEECCTTCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEE-eeEEccCCCCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 4445432 457777654 332211 1111 123467889999 678888888877 99999997 776654332111
Q ss_pred CCCceeeeeecCCCCe--EEEeecccCCCCcceeec----cceeEEEEECC-CCceeEEeec--CCCCCcEEEEEEccCC
Q 012699 235 AFPSVLDLKCSPVEPI--FVSAAASRRYGSSNIYSW----GFASLTVWNMK-TWKAMTVLPL--GEDPPAITSLCFNHNG 305 (458)
Q Consensus 235 ~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~g~i~i~d~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~ 305 (458)
. ..+..++++|+++. ++++... ....+.. .+|.+.+|++. +++....+.. ..+...+.+++|+|+|
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~----~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQP----PYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSST----TCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred C-CCCccEEECCCCCEEEEEEecCC----cceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 1 23567999999995 3444300 0000110 23699999997 4555443321 1233568999999999
Q ss_pred CEEEEEec-CCeEEEEeCC-CCcee--eeee--CCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccC--CCeeEEeecC
Q 012699 306 KILAASAV-DGMIHMFDMS-AGLQI--TGWP--AHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQN--QGQVLWTRNC 376 (458)
Q Consensus 306 ~~l~~~~~-dg~i~v~d~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~~ 376 (458)
++|+++.. ++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++.. +.........
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 98887764 6799999998 66543 3333 24567899999999999887764 78999998763 3221100000
Q ss_pred CcccCC-CCCCC------ceeEEE-EccCCCEEEEEeCC-c-----cEEEEEccCCCcccc----cCCCCCcEEEEEECC
Q 012699 377 SRFCDP-ESSKS------CRHEMA-LDVNGRRLLVTSGS-V-----RAPIYQVRGHASGMR----TLPHGAAITTVDWHP 438 (458)
Q Consensus 377 ~~~~~~-~~~~~------~v~~~~-~s~~g~~l~~~~~~-~-----~i~i~~~~~~~~~~~----~~~h~~~v~~~~~~~ 438 (458)
...... ..+.. .+..++ |+|||++|++++.+ + .|.+|++.....+.. ...+...+..++|+|
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp 316 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP 316 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence 011100 11121 578899 99999999887653 3 899999963222222 223445677899999
Q ss_pred ---CCCeEEEecCC-CcEEEEeC
Q 012699 439 ---TLPMFLTGSAD-HSVQVMSL 457 (458)
Q Consensus 439 ---~~~~l~s~~~d-g~v~iw~l 457 (458)
||++|++++.+ +.|++|++
T Consensus 317 ~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 317 CPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CTTCTTEEEEECSSSCEEEEEEE
T ss_pred CCcCCCEEEEEEcCCCeEEEEEE
Confidence 89999988764 89999986
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=7.6e-22 Score=180.71 Aligned_cols=305 Identities=10% Similarity=0.034 Sum_probs=196.5
Q ss_pred eeeeeccCCCCeEE-----EEeCCCCCEEEEEeC-CCc--EEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEE
Q 012699 139 FLETFLGHTSPISC-----CRFSSSGNNIASASV-DGT--VRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIG 210 (458)
Q Consensus 139 ~~~~~~~h~~~v~~-----~~~~~~~~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 210 (458)
.+..+..|...... .+|+|||++|+.++. ++. |.+||+.+++... ....+...+..+.|+ ++++.|+.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~--lt~~~~~~~~~~~~s-pdg~~l~~~ 98 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ--LTEGRGDNTFGGFLS-PDDDALFYV 98 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE--CCCSSCBCSSSCEEC-TTSSEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE--eeeCCCCCccceEEc-CCCCEEEEE
Confidence 34456666655555 889999999998887 674 7788887766432 222233334467899 788889998
Q ss_pred cCCCcEEEEEcCCCceeeeccCCCCCCcee--eeeecCCCCeEEEeecccCCCCc---------ceeeccceeEEEEECC
Q 012699 211 TADGGIKAWNVDAKRVVCDLNTTDAFPSVL--DLKCSPVEPIFVSAAASRRYGSS---------NIYSWGFASLTVWNMK 279 (458)
Q Consensus 211 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~i~i~d~~ 279 (458)
..++.|++||+.+++.......+. ..+. ...++|++..++....+...... .......+.|.+||+.
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 176 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPA--EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK 176 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT
T ss_pred eCCCeEEEEECCCCcceeeeechh--hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC
Confidence 888999999999988766555443 2232 23458999988754322110000 0011223689999999
Q ss_pred CCceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecC------CeEEEEeCCCCceeeeeeCCC--CCeEEEEEcCCCCEE
Q 012699 280 TWKAMTVLPLGEDPPAITSLCFNH-NGKILAASAVD------GMIHMFDMSAGLQITGWPAHD--SAISSILFGPDETSI 350 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l 350 (458)
+++...... +...+..++|+| +|+.|+....+ ..|.++|+..++. ..+..+. ..+..++|+|||+.|
T Consensus 177 ~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 177 TGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp TCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCE
T ss_pred CCceEEeec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEE
Confidence 987665543 335689999999 99988877653 3788888776544 3343343 357889999999987
Q ss_pred EEecC-C----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE---------eCCccEEEEEcc
Q 012699 351 FSLGS-D----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT---------SGSVRAPIYQVR 416 (458)
Q Consensus 351 ~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---------~~~~~i~i~~~~ 416 (458)
+..+. + ..|++||+.+++........ ... .........+|+|||+.|+.. ..+..|++||+.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMP-ACS---HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEEC-CEE---EEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCC-Cce---eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 65443 2 23999999876542211100 000 000001224799999988865 445689999998
Q ss_pred CCCcccccCCCCC-----------cEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699 417 GHASGMRTLPHGA-----------AITTVDWHPTLPMFLTGS-ADHSVQVMSL 457 (458)
Q Consensus 417 ~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~l 457 (458)
+++. ..+..|.. .+.+++|+|||+.|+.++ .+|...||.+
T Consensus 329 ~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 329 NGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 8643 34444444 578899999999777554 5787777764
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=5.3e-21 Score=172.38 Aligned_cols=285 Identities=8% Similarity=-0.006 Sum_probs=182.4
Q ss_pred eeeeeccCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCcccee-EeeccCCCcccccccccccCC
Q 012699 28 KYANIGQTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRF-ATNMSGNDSISPSKLEFEDVG 106 (458)
Q Consensus 28 ~~~~~~s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~i~~~~~~~~~~~ 106 (458)
+++++ ++++.++++++.++++.+||..+++....+..-. ......+.+++++++ +++...++.+.+|++....
T Consensus 3 ~g~~~-~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-- 76 (349)
T 1jmx_B 3 TGPAL-KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-- 76 (349)
T ss_dssp -CCCC-CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--
T ss_pred ccccc-cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc--
Confidence 35678 8999999999999999999998876543222110 001122344445543 4455667888888875422
Q ss_pred cccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeecc-C-----CCCeEEEEeCCCCCEEEEEeCC------------
Q 012699 107 AGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLG-H-----TSPISCCRFSSSGNNIASASVD------------ 168 (458)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~~~~~~~~~~l~s~~~d------------ 168 (458)
.+..+.. + ...+.+++|+|+|++|++++.+
T Consensus 77 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 124 (349)
T 1jmx_B 77 --------------------------------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 124 (349)
T ss_dssp --------------------------------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred --------------------------------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCC
Confidence 1111111 1 2347789999999999998865
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC-----------
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP----------- 237 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~----------- 237 (458)
+.|.+||+.+++.............+.+++|+ ++++ +++++. .|.+||+.+++....+.......
T Consensus 125 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 125 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA-DDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp CEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC-TTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred CeEEEEECCCccccceeeeccCCCcccceeEC-CCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceee
Confidence 89999999875443333333445568889999 5666 555543 49999999998776655432000
Q ss_pred -----------ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc-CC
Q 012699 238 -----------SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH-NG 305 (458)
Q Consensus 238 -----------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 305 (458)
....+++.+++......... ...+..+|..+++.. .+........+..++|+| ++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sp~dg 267 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADL------------LYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDP 267 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEE------------EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCT
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCcccccc------------ceeEEEEeccCCcEE-ecccccCCCcceeeEecCCCC
Confidence 12223333332211100000 012333565554432 222223445688999999 99
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++++|++++.++.|.+||+.+.+..
T Consensus 268 ~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 268 NQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp TEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 999988 88999999999988777764 345779999999999988888999999999876543
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=2.8e-20 Score=184.28 Aligned_cols=290 Identities=9% Similarity=-0.013 Sum_probs=179.3
Q ss_pred EEEEeCCCCCEEEEEeCC---------CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 151 SCCRFSSSGNNIASASVD---------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
..++|||||++|+.++.+ +.+.+||+.+++... ...+...+...+|+ |+++.|+.+ .++.|++|++
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~~~~~~~~~~~S-PdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---cccCCCcceeeEEC-CCCCEEEEE-ECCeEEEEEC
Confidence 458899999999998876 566799999887542 23345678999999 677777776 4689999999
Q ss_pred CCCceeeeccCCCCCC-----------------ceeeeeecCCCCeEEEeecccCCCCcc-e------------------
Q 012699 222 DAKRVVCDLNTTDAFP-----------------SVLDLKCSPVEPIFVSAAASRRYGSSN-I------------------ 265 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------ 265 (458)
.+++...... ..... ....+.|+|||+.|+....+...-... +
T Consensus 140 ~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~y 218 (740)
T 4a5s_A 140 PNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY 218 (740)
T ss_dssp TTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred CCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecC
Confidence 9887544222 11111 123588999999999887654311100 0
Q ss_pred --e--eccceeEEEEECCC---Cce--eEEeecC----CCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCc--
Q 012699 266 --Y--SWGFASLTVWNMKT---WKA--MTVLPLG----EDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGL-- 326 (458)
Q Consensus 266 --~--~~~~g~i~i~d~~~---~~~--~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~-- 326 (458)
. ......|.+||+.+ ++. ...+... ++...+..++|+|||+.++.... +..|++||+.+++
T Consensus 219 p~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp CBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 0 01123789999998 742 2223211 25667999999999997665533 3479999999887
Q ss_pred --e--eeee--eCCCCCeE-----EEEEcCCCCEEE-EecC-CC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 327 --Q--ITGW--PAHDSAIS-----SILFGPDETSIF-SLGS-DG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 327 --~--~~~~--~~~~~~v~-----~~~~~~~~~~l~-~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
+ +..+ ..|...+. ..+|+|||+.|+ ..+. +| .|++||+....... +. .....+..
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-------lT---~g~~~v~~ 368 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-------IT---KGTWEVIG 368 (740)
T ss_dssp EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-------SC---CSSSCEEE
T ss_pred cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-------cc---cCCEEEEE
Confidence 2 2222 45555544 788999999876 5553 44 58888887543221 11 12233444
Q ss_pred EEEccCCCEEEEEeCC-----c--cEEEEEccCCCcccccC----CCCCcEEEEEECCCCCeEEEecCC---CcEEEEeC
Q 012699 392 MALDVNGRRLLVTSGS-----V--RAPIYQVRGHASGMRTL----PHGAAITTVDWHPTLPMFLTGSAD---HSVQVMSL 457 (458)
Q Consensus 392 ~~~s~~g~~l~~~~~~-----~--~i~i~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~s~~~d---g~v~iw~l 457 (458)
+. .+|++.|+..+.. + .|+..++.+......+. +.......+.|+|++++++..... ..+.+++.
T Consensus 369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~ 447 (740)
T 4a5s_A 369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSS 447 (740)
T ss_dssp EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEET
T ss_pred EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEEC
Confidence 33 2456666554443 3 34444554433211222 234678899999999966643322 24555543
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=6.6e-20 Score=166.03 Aligned_cols=253 Identities=14% Similarity=0.136 Sum_probs=169.9
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecC-CCCCCCccccccCCCceEEEEEecCCCeE--EEEEc-----------
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYD-SSTPASRNATIYCGTEIMSLEWECKSDRL--LLIGT----------- 211 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~----------- 211 (458)
+...+..++|+|+|++|++++.+ .|.+|++. +++.... ........+..++|+ +++++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecCCCCccEEEC-CCCCEEEEEEecCCcceecccee
Confidence 34567889999999999998887 99999997 5543211 111111235568888 66763 44553
Q ss_pred --CCCcEEEEEcC-CCceeeeccC--CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCceeE
Q 012699 212 --ADGGIKAWNVD-AKRVVCDLNT--TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWKAMT 285 (458)
Q Consensus 212 --~dg~i~~wd~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~~~~ 285 (458)
.+|.+.+|++. .++....+.. ......+..++|+|+++.++++.... +.|.+||+. +++...
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~------------~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA------------NKLWTHRKLASGEVEL 182 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSCEEE
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC------------CEEEEEEECCCCCEEE
Confidence 68999999997 4554433321 11225688999999999887765422 499999998 666543
Q ss_pred --EeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCC--CCcee---e---eeeC----CCC------CeEEEE-E
Q 012699 286 --VLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMS--AGLQI---T---GWPA----HDS------AISSIL-F 343 (458)
Q Consensus 286 --~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~--~~~~~---~---~~~~----~~~------~v~~~~-~ 343 (458)
.+....+...+..++|+|+|+++++++. ++.|.+|++. +++.. . .+.. |.. .+..++ |
T Consensus 183 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 262 (365)
T 1jof_A 183 VGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCAL 262 (365)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEE
T ss_pred eeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEE
Confidence 2332223456899999999999988775 6899999765 45432 1 2221 122 488999 9
Q ss_pred cCCCCEEEEecCC-C-----eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc---CCCEEEEEeCC-ccEEEE
Q 012699 344 GPDETSIFSLGSD-G-----KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV---NGRRLLVTSGS-VRAPIY 413 (458)
Q Consensus 344 ~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~-~~i~i~ 413 (458)
+|||++|+++..+ + .|.+|++...+........ . ......+..++|+| ||++|++++.+ +.|.+|
T Consensus 263 spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~--~---~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~ 337 (365)
T 1jof_A 263 TFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL--S---PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY 337 (365)
T ss_dssp CTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE--E---ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee--e---ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence 9999998876643 2 8999999633333211000 0 01223356789999 89999999875 899999
Q ss_pred EccCC
Q 012699 414 QVRGH 418 (458)
Q Consensus 414 ~~~~~ 418 (458)
+++..
T Consensus 338 ~~~~~ 342 (365)
T 1jof_A 338 RWKDE 342 (365)
T ss_dssp EEETT
T ss_pred EEchh
Confidence 99765
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=4.5e-20 Score=170.26 Aligned_cols=223 Identities=11% Similarity=0.132 Sum_probs=158.8
Q ss_pred CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce----------eeecc---CCCC
Q 012699 169 GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV----------VCDLN---TTDA 235 (458)
Q Consensus 169 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~----------~~~~~---~~~~ 235 (458)
+.+++|+.... .....+..++++ +++.++++++.++ +++|+...... ..... ....
T Consensus 23 ~~vri~~~~~~---------~~~~~~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (434)
T 2oit_A 23 KKVRIFDSPEE---------LPKERSSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPM 91 (434)
T ss_dssp CEEECSCCCSS---------CCCSCCBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECC
T ss_pred eeEEecCCccc---------cCCCCccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccC
Confidence 46888764311 112346788898 6677888888887 88987532110 00000 0112
Q ss_pred CCceeeeeecCCCCeEE----EeecccCCCCcceeeccceeEEEEECCCC--------ceeEEe-ecCCCCCcEEEEEEc
Q 012699 236 FPSVLDLKCSPVEPIFV----SAAASRRYGSSNIYSWGFASLTVWNMKTW--------KAMTVL-PLGEDPPAITSLCFN 302 (458)
Q Consensus 236 ~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--------~~~~~~-~~~~~~~~i~~~~~~ 302 (458)
...+.+++|+|++++++ +++.+ +.|++||+++. +....+ .+.+|...|.+++|+
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 158 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYG-------------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWN 158 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTE-------------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEEC
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCC-------------ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEEC
Confidence 24699999999999999 56666 69999998764 222222 235677889999999
Q ss_pred cC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 303 HN-GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 303 ~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
|+ +.+|++++.||.|++||++++..+....+|...|.+++|+|+|++|++++.||.|++||++ ....... .... ..
T Consensus 159 p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~-~~~~-~~ 235 (434)
T 2oit_A 159 PTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI-PCPP-FY 235 (434)
T ss_dssp SSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE-CCCT-TC
T ss_pred CCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc-cCCc-cc
Confidence 97 8899999999999999999987777777889999999999999999999999999999998 3322211 1111 01
Q ss_pred CCCCCCceeEEEEccCCCEEEEEe-CCc------cEEEEEccCC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTS-GSV------RAPIYQVRGH 418 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~-~~~------~i~i~~~~~~ 418 (458)
...+...+.+++|++++.++++.+ .+| .+++|++...
T Consensus 236 ~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 112345799999999998886543 343 3899999765
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=9.7e-20 Score=180.42 Aligned_cols=281 Identities=8% Similarity=0.071 Sum_probs=184.1
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCC-----CceEEEEEecCCCeEEEEEcCC---------
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCG-----TEIMSLEWECKSDRLLLIGTAD--------- 213 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~d--------- 213 (458)
....++.|+|||++++++ |++|++||+.+++.... ...+. .....+.|+ +++++|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF--LENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE--ECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEE--EechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccc
Confidence 346689999999999886 89999999998875321 11111 123457889 778888888765
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+.+.+||+.+++... +.. +...+...+|+|+|+.++.+.. +.|++||+.+++... ++..++.
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~~--------------~~i~~~~~~~~~~~~-lt~~g~~ 153 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVWN--------------NDIYVKIEPNLPSYR-ITWTGKE 153 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEET--------------TEEEEESSTTSCCEE-CCSCCBT
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEEC--------------CeEEEEECCCCceEE-EcCCCCc
Confidence 567799999988653 332 2257899999999999998864 399999998877543 3333333
Q ss_pred CcE-----------------EEEEEccCCCEEEEEecCC------------------------------------eEEEE
Q 012699 294 PAI-----------------TSLCFNHNGKILAASAVDG------------------------------------MIHMF 320 (458)
Q Consensus 294 ~~i-----------------~~~~~~~~~~~l~~~~~dg------------------------------------~i~v~ 320 (458)
..+ ..+.|||||++|+.++.|. .|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 323 3489999999999875331 58889
Q ss_pred eCCC---Cc--eeeeee------CCCCCeEEEEEcCCCCEEEEec----CCCeEEEEeccCCCeeEEeecCCcccC--CC
Q 012699 321 DMSA---GL--QITGWP------AHDSAISSILFGPDETSIFSLG----SDGKIIEWSLQNQGQVLWTRNCSRFCD--PE 383 (458)
Q Consensus 321 d~~~---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~ 383 (458)
|+.+ ++ ....+. +|...+..++|+|||+.++... .+..|.+||+.+++.... |..... ..
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~ 310 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEM 310 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEE
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeec
Confidence 9988 63 223333 3777899999999998666543 244799999987651000 000000 01
Q ss_pred CCCCce-----eEEEEccCCCEEE-EEeCC---ccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEE-EecC----C
Q 012699 384 SSKSCR-----HEMALDVNGRRLL-VTSGS---VRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFL-TGSA----D 449 (458)
Q Consensus 384 ~~~~~v-----~~~~~s~~g~~l~-~~~~~---~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~----d 449 (458)
.+...+ ...+|+|||+.|+ ..+.. ..|++|++.++.. ..+......|..+.+ +|++.|+ ++.. .
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMP 388 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCT
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCC
Confidence 222222 3678999999887 66543 4688888887643 344444556666543 4455444 4444 2
Q ss_pred CcEEEEe
Q 012699 450 HSVQVMS 456 (458)
Q Consensus 450 g~v~iw~ 456 (458)
+...||.
T Consensus 389 ~~~~ly~ 395 (740)
T 4a5s_A 389 GGRNLYK 395 (740)
T ss_dssp TCBEEEE
T ss_pred ceeEEEE
Confidence 4455554
No 166
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=1.9e-20 Score=171.85 Aligned_cols=279 Identities=6% Similarity=-0.035 Sum_probs=180.2
Q ss_pred CeEEEEeCCCCCEEEEEeCC---CcEEEEecCCCCCCCccccccCCCc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 149 PISCCRFSSSGNNIASASVD---GTVRIWTYDSSTPASRNATIYCGTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.+..++|+|||++|+..... ..|.+||+.+++... ....... ...+.|+ ++++.|+.++.++.|.+||+.++
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~ 112 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ---LTEGKGDNTFGGFIS-TDERAFFYVKNELNLMKVDLETL 112 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE---CCCSSCBCTTTCEEC-TTSSEEEEEETTTEEEEEETTTC
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE---eecCCCCccccceEC-CCCCEEEEEEcCCcEEEEECCCC
Confidence 37788999999998776543 368888887765432 1122222 2236788 77888888888889999999988
Q ss_pred ceeeeccCCCCCCceee-------------------eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 225 RVVCDLNTTDAFPSVLD-------------------LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
+.......+.. .... +.++|+++.++..... .......|.+||+.+++...
T Consensus 113 ~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--------~~~~~~~l~~~d~~~g~~~~ 182 (396)
T 3c5m_A 113 EEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY--------HTNPTCRLIKVDIETGELEV 182 (396)
T ss_dssp CEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH--------HTCCCEEEEEEETTTCCEEE
T ss_pred CcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeec--------cCCCcceEEEEECCCCcEEe
Confidence 76544443321 1111 2344554443332200 00123589999999887665
Q ss_pred EeecCCCCCcEEEEEEcc-CCCEEEEEecC------CeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCC-
Q 012699 286 VLPLGEDPPAITSLCFNH-NGKILAASAVD------GMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSD- 356 (458)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d- 356 (458)
... +...+..+.|+| +++.|+..+.+ ..|.+||+..++........ ...+..++|+|+|++|+..+.+
T Consensus 183 ~~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 183 IHQ---DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEE---ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred ecc---CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 543 345689999999 78877766543 36889998765533322211 2357889999999988777554
Q ss_pred ----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc-CCCEEEEEe----------------CCccEEEEEc
Q 012699 357 ----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV-NGRRLLVTS----------------GSVRAPIYQV 415 (458)
Q Consensus 357 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~----------------~~~~i~i~~~ 415 (458)
+.|++||+.++...... .. .. .. +.|+| ||+++++++ .+..|++||+
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~-~~---------~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVM-VM---------PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEE-EC---------CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCccceEEEEECCCCCeEEee-eC---------CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 45999999876432211 10 01 22 88999 999888754 3468999999
Q ss_pred cCCCcccccCCCCC-----------cEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699 416 RGHASGMRTLPHGA-----------AITTVDWHPTLPMFLTGS-ADHSVQVMSL 457 (458)
Q Consensus 416 ~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~l~s~~-~dg~v~iw~l 457 (458)
.++.. ..+..+.. .+..++|+|+|+.|+.++ .++...||.+
T Consensus 328 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 87643 33444443 256789999999877665 4566666654
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=1.7e-18 Score=169.84 Aligned_cols=304 Identities=11% Similarity=-0.025 Sum_probs=191.1
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEE--eCCCcEEEEecCCCCCCCccccccCCCceE---------EEEEec-CCCeE-EE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASA--SVDGTVRIWTYDSSTPASRNATIYCGTEIM---------SLEWEC-KSDRL-LL 208 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~---------~~~~~~-~~~~~-l~ 208 (458)
.+.+|...+..++|++++-++++. +.++...||....+.... ....+...+. ...|+. ++++. |+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE--SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE--ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc--eeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 466899999999999887666776 568899999864332211 1222333334 455662 55555 55
Q ss_pred EEc-CCCcEEEEEcC--C-CceeeeccCCC---CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-
Q 012699 209 IGT-ADGGIKAWNVD--A-KRVVCDLNTTD---AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT- 280 (458)
Q Consensus 209 ~~~-~dg~i~~wd~~--~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~- 280 (458)
.+. .+..|.++++. + +.. ..+.... +...+..++|+|+++.+++++.+..... .......|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG---PSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS---TTCEEEEEEEEETTST
T ss_pred EEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC---CCCceeEEEEEECCCC
Confidence 544 36677777776 3 433 3333311 2356789999999999998876521000 001124899999988
Q ss_pred -----CceeEEeecCCCCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCC-CC---ceeeeeeCCCCCeEEEEE
Q 012699 281 -----WKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD--------GMIHMFDMS-AG---LQITGWPAHDSAISSILF 343 (458)
Q Consensus 281 -----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~-~~---~~~~~~~~~~~~v~~~~~ 343 (458)
++... +. ..+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......|...+..++|
T Consensus 172 ~~~~~~~~~~-l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~ 249 (662)
T 3azo_A 172 AAADRSAVRE-LS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249 (662)
T ss_dssp TTTCGGGSEE-SS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEE
T ss_pred ccccCCceeE-EE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEE
Confidence 54432 21 0334568889999999999987755 379999998 56 444444456788999999
Q ss_pred cCCCCEEEEecCCC--eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc--cCCC
Q 012699 344 GPDETSIFSLGSDG--KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV--RGHA 419 (458)
Q Consensus 344 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~--~~~~ 419 (458)
+|||+++++++.++ .|.+||+.++.. ..................+..++|+|+++++++++. +.++||.+ .++
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~- 326 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG- 326 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT-
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC-
Confidence 99999888888888 566666644332 211110000000001112457899999999999998 99899944 444
Q ss_pred cccccCCCCCcEEEE-EECCCCCeEEEecCCCcEEEEe
Q 012699 420 SGMRTLPHGAAITTV-DWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 420 ~~~~~~~h~~~v~~~-~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
....+..|...+..+ +++++.-++++++.+....||.
T Consensus 327 ~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 327 ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 345555677778777 5544433555566665555554
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.84 E-value=3.5e-17 Score=142.91 Aligned_cols=247 Identities=9% Similarity=0.089 Sum_probs=176.5
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc----ccCCCceEEEEEecCCCeEEEEEcC-CCcEEEE
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT----IYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAW 219 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~w 219 (458)
+|-..+.+++++|+++++++...++.|.+||... +....... ..+...+..+++.++++.++++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 5567789999999999888888899999999763 32211111 0122467889996467776666643 7899999
Q ss_pred EcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 220 NVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
| .+++....+... ....+..+++.|++.++++...+ +.|.+||.. ++....+....+...+..+
T Consensus 106 d-~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~-g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 106 N-QYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECKV-------------MRVIIFDQN-GNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp C-TTSCEEEEECTT-TCSCEEEEEECTTSCEEEEETTT-------------TEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred C-CCCcEEEEecCc-cCCCceEEEEeCCCCEEEEECCC-------------CEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence 9 556666555432 22468899999999877766554 489999964 4555555433444568999
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC--CCCeEEEEEcCCCCEEEEecCCC-eEEEEeccCCCeeEEeecC
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH--DSAISSILFGPDETSIFSLGSDG-KIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~ 376 (458)
+++|+|+++++...++.|++||.. ++.+..+..+ ...+..++++|+|+++++...++ .|.+||... +.......
T Consensus 170 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~- 246 (286)
T 1q7f_A 170 VVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALES- 246 (286)
T ss_dssp EECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEE-
T ss_pred EECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcc-
Confidence 999999877777778999999974 5666666443 35789999999999888887776 999999643 22221111
Q ss_pred CcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 377 SRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
......+..++++|+|+++++ +.+++|++|++...
T Consensus 247 ------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 ------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 112234778999999986666 67899999998654
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=1.6e-18 Score=156.15 Aligned_cols=276 Identities=11% Similarity=0.069 Sum_probs=188.2
Q ss_pred CCCEEEEEe------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEc
Q 012699 158 SGNNIASAS------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNV 221 (458)
Q Consensus 158 ~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~ 221 (458)
++++++... .|++|.+||..+++... ....+... .++|+ +++++++++. .++.|.+||.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~---~i~~g~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~ 88 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLG---MVPTAFNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDA 88 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEE---EEECCEEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEE---EecCCCCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEEC
Confidence 555655543 47899999998876543 22223333 89999 6777777775 3567999999
Q ss_pred CCCceeeeccCCCC----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEE-eecCCCCCc
Q 012699 222 DAKRVVCDLNTTDA----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGEDPPA 295 (458)
Q Consensus 222 ~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~~~~ 295 (458)
.+++.+..+..... ......++++|++++++++... . +.|.+||+.+++.+.. +...+
T Consensus 89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~------------~~v~v~d~~~~~~~~~~i~~~~---- 152 (361)
T 2oiz_A 89 DKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA------------TSIGIVDVAKGDYVEDVTAAAG---- 152 (361)
T ss_dssp TTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS------------EEEEEEETTTTEEEEEEGGGTT----
T ss_pred cCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC------------CeEEEEECCCCcEEEEEecCCC----
Confidence 99988877654321 1346789999999999887643 2 5999999999988777 54322
Q ss_pred EEEEEEccCC-CEEEEEecCCeEEEEeCCC-Cceee------eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 296 ITSLCFNHNG-KILAASAVDGMIHMFDMSA-GLQIT------GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 296 i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
...+.+.|++ ..+++.+.||.+.+|++.. ++... .+..+..++ .+.++|++..++..+.++.+.++|+...
T Consensus 153 ~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 153 CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC
Confidence 2335677765 6778888899999999865 54441 222223332 3344677878887888999999999754
Q ss_pred CeeEEe-ecCCc--ccCCCCCCCceeEEEEccCCCEEEEEeC-----------CccEEEEEccCCCcccccCCCCCcEEE
Q 012699 368 GQVLWT-RNCSR--FCDPESSKSCRHEMALDVNGRRLLVTSG-----------SVRAPIYQVRGHASGMRTLPHGAAITT 433 (458)
Q Consensus 368 ~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----------~~~i~i~~~~~~~~~~~~~~h~~~v~~ 433 (458)
...... ..... .............++|+|+++.++++.. .+.|.+||+.+.+.+..+..+. +.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ 309 (361)
T 2oiz_A 232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALS 309 (361)
T ss_dssp SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeE
Confidence 322111 00000 0000000111223789999998887754 3589999999987776666665 999
Q ss_pred EEECCCCCeEEEecCCCcEEEEeCC
Q 012699 434 VDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 434 ~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++|+|||++|++++. +.|.+||+.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEECCCCCEEEEeCC-CeEEEEECC
Confidence 999999999998887 999999963
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.83 E-value=1.2e-17 Score=148.67 Aligned_cols=250 Identities=11% Similarity=0.083 Sum_probs=179.5
Q ss_pred CCCeEEEEeCCCCCEEEEEeCC------------------------CcEEEEecCCCCCCCccccccCCCceEEEEEecC
Q 012699 147 TSPISCCRFSSSGNNIASASVD------------------------GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK 202 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~d------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 202 (458)
-+.+.+++++|+|+++++...+ ++|.+||..+++.... .....-..+..++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~p~gia~d-~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-SGKNLFYLPHGLSID-T 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-ECTTTCSSEEEEEEC-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-cCCCccCCceEEEEC-C
Confidence 4678999999999988888777 4799999887765421 111223467899999 6
Q ss_pred CCeEEEEEcCCCcEEEEEcCCCc-eeeeccC-------CCCCCceeeeeecC-CCCeEEEee-cccCCCCcceeecccee
Q 012699 203 SDRLLLIGTADGGIKAWNVDAKR-VVCDLNT-------TDAFPSVLDLKCSP-VEPIFVSAA-ASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 203 ~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-------~~~~~~v~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g~ 272 (458)
+++++++...++.|++||..... .+..+.. ..+...+..++++| ++.++++.+ .+ +.
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~-------------~~ 167 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN-------------SR 167 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC-------------CE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC-------------Ce
Confidence 77788888889999999986552 3333321 22234688999999 777777765 34 49
Q ss_pred EEEEECCCCceeEEeecCC--------CCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEE
Q 012699 273 LTVWNMKTWKAMTVLPLGE--------DPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSI 341 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~ 341 (458)
|++|| .+++....+...+ +......++++|+ +.++++...++.|++||..+++.+..+. .+...+.++
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 99999 5566666553211 1234789999998 6677777778999999999888888774 456688999
Q ss_pred EEcC------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 342 LFGP------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 342 ~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
+|+| +++.+++...+..|++||..+++...... ....+...+..++++|+|.++++...+++|++|++
T Consensus 247 ~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 247 SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 9999 33333333445689999998765443221 11234556899999999988888888999999998
Q ss_pred cCC
Q 012699 416 RGH 418 (458)
Q Consensus 416 ~~~ 418 (458)
...
T Consensus 321 ~~~ 323 (329)
T 3fvz_A 321 TEK 323 (329)
T ss_dssp EEC
T ss_pred Ccc
Confidence 764
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.82 E-value=2.9e-17 Score=143.46 Aligned_cols=239 Identities=11% Similarity=0.123 Sum_probs=172.4
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC----CCCCceeeeee-cCCCCeEEEeec-ccCCCCcce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT----DAFPSVLDLKC-SPVEPIFVSAAA-SRRYGSSNI 265 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~v~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 265 (458)
..+.+++++ +++.++++...++.|.+||.. ++....+... .+...+..+++ .+++.++++... +
T Consensus 30 ~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~-------- 99 (286)
T 1q7f_A 30 TEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT-------- 99 (286)
T ss_dssp SCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG--------
T ss_pred CCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC--------
Confidence 457889998 667888888889999999987 5555544321 12246788999 567766666533 3
Q ss_pred eeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEE
Q 012699 266 YSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILF 343 (458)
Q Consensus 266 ~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~ 343 (458)
+.|.+|| .+++....+.. .+...+..++++|+|+++++...++.|.+||.. ++.+..+. .+...+..+++
T Consensus 100 -----~~i~~~d-~~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 100 -----HQIQIYN-QYGQFVRKFGA-TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp -----CEEEEEC-TTSCEEEEECT-TTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEE
T ss_pred -----CEEEEEC-CCCcEEEEecC-ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEE
Confidence 4999999 56666666542 233568999999999988877778999999964 56665554 34557899999
Q ss_pred cCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEEccCCCccc
Q 012699 344 GPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQVRGHASGM 422 (458)
Q Consensus 344 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~~~~~~~~~ 422 (458)
+|+++++++.+.++.|++||... .... ... .......+..++++|+|+++++...++ .|.+|+..+. .+.
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g-~~~~-~~~------~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~ 242 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEG-QYLR-QIG------GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS 242 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTC-CEEE-EES------CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE
T ss_pred CCCCCEEEEECCCCEEEEEcCCC-CEEE-EEc------cCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE
Confidence 99998888888899999999753 2221 111 111234678999999999888887776 9999997543 333
Q ss_pred ccCCC--CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 423 RTLPH--GAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 423 ~~~~h--~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+..+ ...+.+++++|+|+++++ +.|+.|++|++.
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 33322 235789999999987777 569999999863
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.82 E-value=1.1e-17 Score=148.98 Aligned_cols=244 Identities=11% Similarity=0.108 Sum_probs=177.4
Q ss_pred CCceEEEEEecCCCeEEEEEcCC------------------------CcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699 191 GTEIMSLEWECKSDRLLLIGTAD------------------------GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~d------------------------g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (458)
-..+.+++++ ++++++++...+ +.|.+||..+++....+.. .....+..++++|
T Consensus 23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-NLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-TTCSSEEEEEECT
T ss_pred cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-CccCCceEEEECC
Confidence 3568899998 667777777766 4799999998887765542 2335688999999
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-eeEEeec-------CCCCCcEEEEEEcc-CCCEEEEEe-cCCe
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AMTVLPL-------GEDPPAITSLCFNH-NGKILAASA-VDGM 316 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~dg~ 316 (458)
++.++++...+ +.|++||..... .+..+.. ..+......++++| ++.++++.+ .++.
T Consensus 101 ~g~l~v~d~~~-------------~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 101 DGNYWVTDVAL-------------HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TSCEEEEETTT-------------TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CCCEEEEECCC-------------CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 99977776655 499999986542 3444321 23334689999999 788878776 6899
Q ss_pred EEEEeCCCCceeeeeeCC----------CCCeEEEEEcCC-CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 317 IHMFDMSAGLQITGWPAH----------DSAISSILFGPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
|++|| .+++.+..+... -.....++++|+ +.++++...++.|++||..+++..... .....
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~-------~~~~~ 239 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI-------KHASF 239 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-------CCTTT
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-------ecccc
Confidence 99999 557776666422 234889999998 777777788999999999855433221 11134
Q ss_pred CCceeEEEEcc------CCCEEEEEeCCccEEEEEccCCCccccc---CCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 386 KSCRHEMALDV------NGRRLLVTSGSVRAPIYQVRGHASGMRT---LPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 386 ~~~v~~~~~s~------~g~~l~~~~~~~~i~i~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
...+..++++| +|+..++...+.++++|+..+++....+ .++...+.+++++|+|.++++...++.|++|+
T Consensus 240 ~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 240 GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 45678899999 3333333334558999999887655544 25667899999999999888989999999998
Q ss_pred C
Q 012699 457 L 457 (458)
Q Consensus 457 l 457 (458)
+
T Consensus 320 ~ 320 (329)
T 3fvz_A 320 L 320 (329)
T ss_dssp E
T ss_pred C
Confidence 6
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.82 E-value=3.3e-17 Score=154.81 Aligned_cols=339 Identities=11% Similarity=0.042 Sum_probs=225.6
Q ss_pred cCCCceeeeeecCcceEEeccccccccccceeeeeccCCceeeeeCCccceeEeeccCCCcccccccccccCCcccceee
Q 012699 34 QTKNSTLASGVNEESLLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFATNMSGNDSISPSKLEFEDVGAGDIIQM 113 (458)
Q Consensus 34 s~~~~~l~s~~~d~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (458)
.+.+.++++...++++.++|..+++....+..- ..+ ..+.++++++++++++.++.+.++|+..... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p----~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---~---- 231 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAV----HISRLSASGRYLFVIGRDGKVNMIDLWMKEP---T---- 231 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCE----EEEEECTTSCEEEEEETTSEEEEEETTSSSC---C----
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCc----cceEECCCCCEEEEEcCCCeEEEEECCCCCC---c----
Confidence 455678888899999999999988766544321 111 1356677788888888899999999741110 0
Q ss_pred eccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeC----CCCCEEEEEeC-CCcEEEEecCCCCCCCccccc
Q 012699 114 FNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFS----SSGNNIASASV-DGTVRIWTYDSSTPASRNATI 188 (458)
Q Consensus 114 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~ 188 (458)
.+..+.... ....++|+ |||++++++.. +++|.++|..+.+.+......
T Consensus 232 -------------------------~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 232 -------------------------TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp -------------------------EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred -------------------------EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence 222232222 35689999 69999877654 589999998887765432221
Q ss_pred c--------C-CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccC
Q 012699 189 Y--------C-GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRR 259 (458)
Q Consensus 189 ~--------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 259 (458)
. + ...+..+..++....+++....+|.|.++|....+........ ......++.|+|++++++++....
T Consensus 286 ~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~s- 363 (567)
T 1qks_A 286 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANAR- 363 (567)
T ss_dssp EECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGG-
T ss_pred ccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCC-
Confidence 1 1 2257778888666777777788899999998875432221111 113567889999999988776543
Q ss_pred CCCcceeeccceeEEEEECCCCceeEEeec-C--CCCCcEEEEEEccCCCEE-EEEe-cCCeEEEEeCCC-------Cce
Q 012699 260 YGSSNIYSWGFASLTVWNMKTWKAMTVLPL-G--EDPPAITSLCFNHNGKIL-AASA-VDGMIHMFDMSA-------GLQ 327 (458)
Q Consensus 260 ~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~l-~~~~-~dg~i~v~d~~~-------~~~ 327 (458)
+.|.++|+.+++....+.. . .|++.-..+ ++|++..+ +++. .++.|.++|..+ .+.
T Consensus 364 -----------n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kv 431 (567)
T 1qks_A 364 -----------NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 431 (567)
T ss_dssp -----------TEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred -----------CeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEE
Confidence 5999999999998877765 3 233222222 68875544 4443 468999999987 567
Q ss_pred eeeeeCCCCCeEEEEEcCCCCEEEEecC-------CCeEEEEeccCC-----CeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 328 ITGWPAHDSAISSILFGPDETSIFSLGS-------DGKIIEWSLQNQ-----GQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 328 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
++++......-..+..+|+++++++... .+.|.++|+.+. .....................+..+.|+
T Consensus 432 v~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (567)
T 1qks_A 432 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFN 511 (567)
T ss_dssp EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEEC
T ss_pred EEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeEC
Confidence 7777755444345788999999988663 458999999876 2211111100000111234568899999
Q ss_pred cCCCEEEEEeC-----CccEEEEEccCCCccccc
Q 012699 396 VNGRRLLVTSG-----SVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 396 ~~g~~l~~~~~-----~~~i~i~~~~~~~~~~~~ 424 (458)
|+|+.+.++.. ++.|.++|..+.+....+
T Consensus 512 ~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 512 KDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp TTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 99999887743 689999999988654443
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1e-17 Score=150.78 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=179.5
Q ss_pred eeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCcccccc----CCCceEEEEEecCCCeEE
Q 012699 142 TFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIY----CGTEIMSLEWECKSDRLL 207 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l 207 (458)
.+..+..+ .++|+||+++++++. .+++|.+||..+.+......... .......++++ +++++|
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l 122 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFI 122 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC-CCCCEE
Confidence 34444455 899999999998886 36789999998776543222111 23456788999 677778
Q ss_pred EEEcC--CCcEEEEEcCCCceeee-ccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCC-Cc
Q 012699 208 LIGTA--DGGIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WK 282 (458)
Q Consensus 208 ~~~~~--dg~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~ 282 (458)
+++.. ++.|.+||+.+++.+.. +.... ...+.+.|++ ..+++.+.+ |.+.+|+... ++
T Consensus 123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~d-------------g~~~~v~~~~~g~ 185 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGD-------------GGLLTINLGEDGK 185 (361)
T ss_dssp EEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETT-------------SSEEEEEECTTSS
T ss_pred EEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCC-------------CcEEEEEECCCCc
Confidence 77753 68999999999988877 65432 2334566665 455555555 5788887754 44
Q ss_pred eeEEee----cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeCC----------CCCeEEEEEcCC
Q 012699 283 AMTVLP----LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPAH----------DSAISSILFGPD 346 (458)
Q Consensus 283 ~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~----------~~~v~~~~~~~~ 346 (458)
...... +.....+ ..+.++|++..++..+.++.++++|+..... ...+... ......++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 332211 1111111 2334467777777788899999999875432 1221110 011223789999
Q ss_pred CCEEEEecC-----------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 347 ETSIFSLGS-----------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 347 ~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
++.++++.. .+.|.+||+.+.+...... .+ . +..++|+|||++|++++. +.|.+||.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~---------~~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP---------GR-D-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE---------CT-T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe---------cC-C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 888776543 3489999999875443221 11 2 789999999999998887 99999999
Q ss_pred cCC--CcccccCCCCCcEEEEEECCCCC
Q 012699 416 RGH--ASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 416 ~~~--~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
.++ +.+..+..+......++++|+|+
T Consensus 333 ~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 998 66666567778899999999986
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=3.5e-18 Score=167.66 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=151.6
Q ss_pred CCCCCE-EEEEeC-CCcEEEEecC--C-CCCCCcccccc---CCCceEEEEEecCCCeEEEEEcCC----------CcEE
Q 012699 156 SSSGNN-IASASV-DGTVRIWTYD--S-STPASRNATIY---CGTEIMSLEWECKSDRLLLIGTAD----------GGIK 217 (458)
Q Consensus 156 ~~~~~~-l~s~~~-dg~v~iwd~~--~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~ 217 (458)
||||+. |+.++. +..|.++++. + +... ...... +...+..++|+ ++++.|++++.+ ..|+
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEE
Confidence 499988 776553 4566666665 2 3322 111111 34568899999 677778877766 5899
Q ss_pred EEEcCC------Cceeeecc-CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC-CCc--eeEEe
Q 012699 218 AWNVDA------KRVVCDLN-TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK-TWK--AMTVL 287 (458)
Q Consensus 218 ~wd~~~------~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-~~~--~~~~~ 287 (458)
+||+.+ ++... +. .. ...+..++|+|+|+.++..+.+.... ......|.+||+. +++ ....+
T Consensus 165 ~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~-----~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 165 AVPLDGSAAADRSAVRE-LSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRM-----PWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEETTSTTTTCGGGSEE-SSCSC--SSEECCCEECTTSSEEEEEEECTTCC-----TTTCEEEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCccccCCceeE-EEecC--CCcccCceECCCCCEEEEEECCCCCC-----CCCCcEEEEEEECCCCcccccEEe
Confidence 999988 55433 32 22 25678899999999998877553110 0112489999999 562 22223
Q ss_pred ecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCCceeeeeeCCCCC--------eEEEEEcCCCCEEEEecCCC
Q 012699 288 PLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAGLQITGWPAHDSA--------ISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 288 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg 357 (458)
. ..+...+..++|+|||++++++..++ .|++||+.+++.......+... +..++|+|+++++++++. +
T Consensus 237 ~-~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~ 314 (662)
T 3azo_A 237 L-GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G 314 (662)
T ss_dssp E-EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S
T ss_pred C-CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C
Confidence 2 23346789999999999888888788 6777787666654443333222 567899999999999998 9
Q ss_pred eEEEEeccCC-CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE--EEeCCc--cEEEEEccCCC
Q 012699 358 KIIEWSLQNQ-GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL--VTSGSV--RAPIYQVRGHA 419 (458)
Q Consensus 358 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--~~~~~~--~i~i~~~~~~~ 419 (458)
.+++|.+... +.... + ..+...+..+ ++++++.++ .++.+. .++++++.+++
T Consensus 315 ~~~l~~~d~~~~~~~~------l---~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 315 AAVLGILDPESGELVD------A---AGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp SCEEEEEETTTTEEEE------C---CSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ccEEEEEECCCCcEEE------e---cCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9999955422 22211 1 1223445555 145554433 334443 46666665553
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.82 E-value=5.6e-18 Score=151.49 Aligned_cols=282 Identities=13% Similarity=0.130 Sum_probs=186.5
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
..|.++.|++++..++..+.++.++.|.- +.. .....+...+.+++|+ +++++++++..++.|.+||..+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~i~~~d~~~~~~~ 79 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---EPW--LEISKKGLQLEGLNFD-RQGQLFLLDVFEGNIFKINPETKEIK 79 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EEE--EEEESSCCCEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred cccceeeecCCccceeEEeecccCccccc---cee--EEEeccCccccCcEEC-CCCCEEEEECCCCEEEEEeCCCCcEE
Confidence 45778889998877777778888998822 111 1122344567899999 67777788888999999999988765
Q ss_pred eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699 228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI 307 (458)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (458)
...... ...+..++++|++.++++...+.. ..+.|.+||..++.....+........+..++++|+|++
T Consensus 80 ~~~~~~--~~~~~~i~~~~dg~l~v~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 80 RPFVSH--KANPAAIKIHKDGRLFVCYLGDFK---------STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp EEEECS--SSSEEEEEECTTSCEEEEECTTSS---------SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred EEeeCC--CCCcceEEECCCCcEEEEeCCCCC---------CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence 443222 256899999999988777654310 013899999988766544332223456899999999987
Q ss_pred EEEEec------CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 308 LAASAV------DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 308 l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
+++... .+.|..+|..+++... +..+...+..++|+|+++.|+ +.+.++.|.+||+.+..............
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 776553 3567777766554432 223344578999999998654 44568899999996432211100000000
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC------CcEEEEEECCCCCeEEEecCC
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG------AAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~s~~~d 449 (458)
.... ...+..++++++|+++++...++.|.+|+.++. ....+..+. ..+.+++|+|+++.|+.++.+
T Consensus 228 ~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 228 YFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCCCC-EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 0011 145788999999998888778899999998543 332322222 268999999998766655444
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.82 E-value=5.6e-18 Score=154.92 Aligned_cols=298 Identities=11% Similarity=0.025 Sum_probs=181.8
Q ss_pred hhccccCCCcceee-----eeeccCCCceeeeeec-Ccc--eEEeccccccccccceeeeeccCCceeeeeCCccceeEe
Q 012699 16 QLSRLKNNSETIKY-----ANIGQTKNSTLASGVN-EES--LLLSTNSSEACATTATHMGSAEMGQTWASSRPALSRFAT 87 (458)
Q Consensus 16 ~~~~l~~h~~~i~~-----~~~~s~~~~~l~s~~~-d~~--~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (458)
.+.+|..|...... .+| +|||++|+.++. ++. +.+|+...+........ +........++++++.|+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~-SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~----~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCF-TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG----RGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCB-CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS----SCBCSSSCEECTTSSEEE
T ss_pred ceEEecCCcccccchhhcCccC-CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC----CCCCccceEEcCCCCEEE
Confidence 45677777766655 889 999999998887 664 77777776654311110 000011123444566666
Q ss_pred eccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEE--EeCCCCCEEEEE
Q 012699 88 NMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCC--RFSSSGNNIASA 165 (458)
Q Consensus 88 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~ 165 (458)
..+.++.+.+|++.... ....+..+...+... .++|++++++..
T Consensus 97 ~~~~~~~l~~~d~~~g~----------------------------------~~~~~~~~~~~~~~~~~~~~~dg~~l~~~ 142 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLE----------------------------------ENVVYQVPAEWVGYGTWVANSDCTKLVGI 142 (388)
T ss_dssp EEETTTEEEEEETTTCC----------------------------------EEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred EEeCCCeEEEEECCCCc----------------------------------ceeeeechhhcccccceeECCCCCeeccc
Confidence 66667778888765422 111122333333333 347788777642
Q ss_pred ----------------------eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC------CcEE
Q 012699 166 ----------------------SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD------GGIK 217 (458)
Q Consensus 166 ----------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~ 217 (458)
..+..|.+||+.+++.. ....+...+..+.|+|.+++.|+....+ ..|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 143 EIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST---VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp EEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE---EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred cccCcccccccccchhhhhhccCCcceEEEEECCCCceE---EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 23467999999887643 2234456688999994277777766553 3788
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc--
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-- 295 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-- 295 (458)
++|..++.... +........+..+.|+|+++.++..+..... ....|.+||+.+++.........+...
T Consensus 220 ~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--------~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 290 (388)
T 3pe7_A 220 LINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKGS--------PDRFIYSADPETLENRQLTSMPACSHLMS 290 (388)
T ss_dssp EEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETTC--------CCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred EEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCCC--------CcceEEEEecCCCceEEEEcCCCceeeee
Confidence 88887665433 3222211257788999999988665543210 012599999999876554333321000
Q ss_pred -EEEEEEccCCCEEEEE---------ecCCeEEEEeCCCCceeeeeeCCCC-----------CeEEEEEcCCCCEEEEec
Q 012699 296 -ITSLCFNHNGKILAAS---------AVDGMIHMFDMSAGLQITGWPAHDS-----------AISSILFGPDETSIFSLG 354 (458)
Q Consensus 296 -i~~~~~~~~~~~l~~~---------~~dg~i~v~d~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~ 354 (458)
...++|+|+|+.|+.. ..+..|++||+.+++. ..+..+.. .+.+++|+|||+.|+..+
T Consensus 291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 1113699999988754 4466899999988764 44555555 578899999999887665
Q ss_pred -CCCeEEEEecc
Q 012699 355 -SDGKIIEWSLQ 365 (458)
Q Consensus 355 -~dg~i~iwd~~ 365 (458)
.++...+|.+.
T Consensus 370 ~~~g~~~l~~~~ 381 (388)
T 3pe7_A 370 DVHGKPALYLAT 381 (388)
T ss_dssp CTTSSCEEEEEE
T ss_pred cCCCceeEEEEE
Confidence 46776677654
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=7.1e-16 Score=145.78 Aligned_cols=284 Identities=13% Similarity=0.133 Sum_probs=194.0
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecC--CCCCCCccccccCCCceEEEEEec---CCCeEEEEEc-CCCcEEEEEcC
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYD--SSTPASRNATIYCGTEIMSLEWEC---KSDRLLLIGT-ADGGIKAWNVD 222 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~~~~-~dg~i~~wd~~ 222 (458)
.+..+.|+|||+++++++.|+.|.+||+. +.+.. .....+.....++|++ +++++++++. .++.+.++|..
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v---~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe---EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 46689999999999999999999999995 44433 2334455678999995 4676666655 46899999999
Q ss_pred CCceeeeccCCC---------CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 223 AKRVVCDLNTTD---------AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 223 ~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+.+.+..+.... ....+..+..++++..++....+. |.|.++|..+.+........ ..
T Consensus 275 t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~------------g~v~~vd~~~~~~~~v~~i~-~~ 341 (567)
T 1qks_A 275 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET------------GKILLVDYTDLNNLKTTEIS-AE 341 (567)
T ss_dssp TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT------------TEEEEEETTCSSEEEEEEEE-CC
T ss_pred CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC------------CeEEEEecCCCccceeeeee-cc
Confidence 999887765431 012567788888877666555443 69999999876544333222 22
Q ss_pred CcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC-----CCCCeEEEEEcCCCCEE-EEec-CCCeEEEEecc
Q 012699 294 PAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPA-----HDSAISSILFGPDETSI-FSLG-SDGKIIEWSLQ 365 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l-~~~~-~dg~i~iwd~~ 365 (458)
.....+.|+|++++++++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|++..+ +++. .++.|.++|..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence 3477899999999987766 478999999999988776654 33222222 57875444 4443 46899999998
Q ss_pred CCCe------eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-------CccEEEEEccCC-----CcccccC--
Q 012699 366 NQGQ------VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-------SVRAPIYQVRGH-----ASGMRTL-- 425 (458)
Q Consensus 366 ~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------~~~i~i~~~~~~-----~~~~~~~-- 425 (458)
+.+. ...... ........+..+|++++|.+... .++|.++|+.+. .......
T Consensus 421 ~~~~~~~~~kvv~~i~--------~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~ 492 (567)
T 1qks_A 421 PEGHPDNAWKILDSFP--------ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 492 (567)
T ss_dssp TTTCTTTBTSEEEEEE--------CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred CCCCccccCEEEEEEe--------cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc
Confidence 6321 111111 11122244778999999998773 358999999876 2221111
Q ss_pred -------CCCCcEEEEEECCCCCeEEEec-----CCCcEEEEeC
Q 012699 426 -------PHGAAITTVDWHPTLPMFLTGS-----ADHSVQVMSL 457 (458)
Q Consensus 426 -------~h~~~v~~~~~~~~~~~l~s~~-----~dg~v~iw~l 457 (458)
.....+..+.|+|+|+.+..+. .++.|.|+|.
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 493 AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp HHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 1245789999999999655542 3789999884
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=1.7e-18 Score=158.78 Aligned_cols=250 Identities=8% Similarity=-0.060 Sum_probs=150.1
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEE-------------------EEEecCCCeEEEEE--
Q 012699 152 CCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMS-------------------LEWECKSDRLLLIG-- 210 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~-- 210 (458)
.+.|+|||++|+.++.++.|.+||+.+++.... ...+...... +.|+ ++++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~ 161 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEF 161 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEE--EecccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeee
Confidence 368999999999998888999999887654321 1111111111 2334 333333332
Q ss_pred ---cCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 211 ---TADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 211 ---~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
..+..|.+||+.+++....... ...+..+.|+| ++..++....+... .....|.+||+..++....
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~-------~~~~~l~~~d~~~~~~~~l 231 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHD-------LVDARMWLVNEDGSNVRKI 231 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSS-------SCSCCCEEEETTSCCCEES
T ss_pred ccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCC-------CCCceEEEEECCCCceeEe
Confidence 3556899999998876554422 24688899999 78877666532100 0012788899876554332
Q ss_pred eecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceeeeeeCCCCCeEEEEEcC-CCCEEEEec------
Q 012699 287 LPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQITGWPAHDSAISSILFGP-DETSIFSLG------ 354 (458)
Q Consensus 287 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 354 (458)
.. ......+..++|+|+|++|+.++.+ +.|++||+.+++....... .. .. +.|+| +|+++++++
T Consensus 232 ~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 232 KE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC---
T ss_pred ec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCccee
Confidence 22 1112357889999999988777654 4599999988765433222 12 33 89999 999888754
Q ss_pred ----------CCCeEEEEeccCCCeeEEeecCCcccC-CCCCCCceeEEEEccCCCEEEEEeC-Ccc--EEEEEccCC
Q 012699 355 ----------SDGKIIEWSLQNQGQVLWTRNCSRFCD-PESSKSCRHEMALDVNGRRLLVTSG-SVR--APIYQVRGH 418 (458)
Q Consensus 355 ----------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~~--i~i~~~~~~ 418 (458)
.+..|++||+.++.............. .......+..++|+|||+.|+.++. ++. ++.+++.+.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred eccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 347899999986543221111000000 0000112456789999999887775 444 444454444
No 180
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.80 E-value=3e-15 Score=131.48 Aligned_cols=283 Identities=9% Similarity=0.031 Sum_probs=195.0
Q ss_pred eccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 143 FLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 143 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
+..+...+.++++.++|+++++...++.|.+||.. +... ..........+..++++ +++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCC
Confidence 44566789999999999988777668899999987 4322 11111234678899998 677777777778899999986
Q ss_pred CCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc
Q 012699 223 AKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (458)
++. ..+........+..+++.+++.++++...+ +.|..||. +++... +........+..++++
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~ 149 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNG-------------NRIGRITD-DGKIRE-YELPNKGSYPSFITLG 149 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTT-------------TEEEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCC-------------ceEEEECC-CCCEEE-ecCCCCCCCCceEEEc
Confidence 332 222222223568899999999877766544 48999998 544433 3233334568999999
Q ss_pred cCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 303 HNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 303 ~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
++|++.++...++.|..||. +++.... ...+...+.+++++++++++++...++.|.+||. +.......
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-------- 219 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-------- 219 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE--------
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE--------
Confidence 99987777766789999998 6654432 3334557889999999987777777889999998 44322110
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.......+..++++++|+++++...++.|..|+..+.........+...+.++++ ++++++++... +.+..++.
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~ 293 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTL 293 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEE
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEc
Confidence 1123456889999999997666657788999998432111112245567999999 99887776654 45555543
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.80 E-value=3.3e-17 Score=147.40 Aligned_cols=270 Identities=10% Similarity=0.071 Sum_probs=176.2
Q ss_pred CCeEEEEeCCCCCEEEEEe---------CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---C-
Q 012699 148 SPISCCRFSSSGNNIASAS---------VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---G- 214 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g- 214 (458)
..+..+++ ||++++... .++.|.+||+.+++... . ..+..+.|+ ++++.|+..+.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----l---~~~~~~~~S-pDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF----I---ENATMPRIS-PDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE----E---ESCEEEEEC-TTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE----c---ccCCCeEEC-CCCCEEEEEEeccCCCc
Confidence 34666777 888876642 25679999998775421 1 457889999 677777766543 3
Q ss_pred -cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC--------------cceeeccceeEEEEECC
Q 012699 215 -GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS--------------SNIYSWGFASLTVWNMK 279 (458)
Q Consensus 215 -~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~g~i~i~d~~ 279 (458)
.|.+||+.+++........ . +..+.|+|+++.++..+.+..... ..........|.+||+.
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEEETTTTEEEEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred ceEEEEECCCCceEEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 4888888887765443332 3 889999999998888764310000 00000113589999999
Q ss_pred CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-------eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEE
Q 012699 280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-------MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFS 352 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 352 (458)
+++....+.. . .+..++|+|+| +++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+|++|+.
T Consensus 161 ~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 161 SEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp TTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEE
T ss_pred CCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEE
Confidence 8877444443 2 57889999999 777775542 33444433444 3344444 555554 999998887
Q ss_pred ecCC--------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE-EEEccCCCEEEEEeCCccEEEEEccCCCcccc
Q 012699 353 LGSD--------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE-MALDVNGRRLLVTSGSVRAPIYQVRGHASGMR 423 (458)
Q Consensus 353 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~ 423 (458)
++.+ ..|.+|| ++ ..... ...+...+.. +.|+ ++ ++++++.++.++|| +.++ ....
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~-~~~~l--------~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~~~ 296 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GK-EVMGI--------LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EIKP 296 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SS-CEEES--------STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS-SEEE
T ss_pred EEccccCCccccceEEEEC--CC-ceEec--------cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ceEE
Confidence 7654 3677887 32 22111 1123456775 8999 88 88888999999999 8743 3444
Q ss_pred cCCCCCcEEEEEECCCCCeEEEecCCCcE-EEEeC
Q 012699 424 TLPHGAAITTVDWHPTLPMFLTGSADHSV-QVMSL 457 (458)
Q Consensus 424 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v-~iw~l 457 (458)
+..+...|.+++|+| .++++++.++.. .||.+
T Consensus 297 ~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 297 IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 556678899999999 677777777665 77765
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=3.9e-16 Score=138.72 Aligned_cols=261 Identities=10% Similarity=0.019 Sum_probs=184.0
Q ss_pred CCCcEEEEecCCCCCCCcccc----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeee
Q 012699 167 VDGTVRIWTYDSSTPASRNAT----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDL 242 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 242 (458)
.+++|.++|..+++....... ...+.....+.+. ++.++++...++.|.+||..+++.+.++... .....+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---TSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECC---SSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCC---CCCcEE
Confidence 478999999988765432211 1122345777775 5667777777899999999999998877432 568889
Q ss_pred eecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC---CCcEEEEEEccCCCEEEEEe--cCCeE
Q 012699 243 KCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED---PPAITSLCFNHNGKILAASA--VDGMI 317 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~--~dg~i 317 (458)
++++++..+++...+ +.|.+||+.+++....+..... ......+++ . +..++++. .++.|
T Consensus 90 ~~~~~g~lyv~~~~~-------------~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 90 HFLSDEKAYVTQIWD-------------YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEETTEEEEEEBSC-------------SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEE
T ss_pred EEeCCCeEEEEECCC-------------CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEE
Confidence 998888554444343 5999999999988877765430 013455666 3 44555554 48899
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC----------CeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 318 HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD----------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+.+..... .. ....
T Consensus 155 ~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~-~~-------~~g~ 225 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF-KF-------KLGD 225 (328)
T ss_dssp EEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE-EC-------CTTC
T ss_pred EEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE-ec-------CCCC
Confidence 99999999888877653 345689999999877776655 78999999876433211 10 1123
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc-cCC-CCCcEEEEEECC-CCCeEEEe----cCCCcEEEEeCC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR-TLP-HGAAITTVDWHP-TLPMFLTG----SADHSVQVMSLS 458 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~-~~~-h~~~v~~~~~~~-~~~~l~s~----~~dg~v~iw~l~ 458 (458)
.+..++++|++++|+++.. .|.+||..+.+.... +.. +...+..++++| ++.++++. ..++.|.+||.+
T Consensus 226 ~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 226 WPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 5789999999999988766 899999987754322 122 246789999999 55566665 578899999864
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.78 E-value=1.7e-15 Score=135.30 Aligned_cols=251 Identities=10% Similarity=0.108 Sum_probs=167.6
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----C
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----G 214 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g 214 (458)
....+..+...+.+++|+|++++++++..++.|.+||..+++... ........+.+++++ ++++++++...+ +
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR--PFVSHKANPAAIKIH-KDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECSSSSEEEEEEC-TTSCEEEEECTTSSSCC
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE--EeeCCCCCcceEEEC-CCCcEEEEeCCCCCCCc
Confidence 445566777788999999999988888889999999988765432 111345678999999 667777776666 6
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
.|.+||.+++.....+........+..+.++|++.++++...... ....+.|..+|..+++...... ...
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~---~~~ 182 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-------TNPLGGVYYVSPDFRTVTPIIQ---NIS 182 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-------TBCCEEEEEECTTSCCEEEEEE---EES
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-------cCCCceEEEEeCCCCEEEEeec---CCC
Confidence 899999988776533322222356889999999988776653210 0011467777776555443322 123
Q ss_pred cEEEEEEccCCCEEEEE-ecCCeEEEEeCCC-Cceeee--------eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 295 AITSLCFNHNGKILAAS-AVDGMIHMFDMSA-GLQITG--------WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~-~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
.+..++|+|+++.|+++ +.++.|++||+.+ +..+.. +.++ ..+..++++++|+++++...++.|.+||.
T Consensus 183 ~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 183 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred cccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 47889999999866554 4578999999864 333221 1222 46788999999998887777889999998
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
. .+..... .... ....+...+..++|+||++.|++++.+
T Consensus 262 ~-g~~~~~~-~~~~--~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 262 R-GYPIGQI-LIPG--RDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp T-SCEEEEE-ECTT--GGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred C-CCEEEEE-EcCC--CccccccCcceEEECCCCCEEEEEeCc
Confidence 4 3322211 1000 001122257889999998888776665
No 184
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.75 E-value=4.2e-14 Score=124.14 Aligned_cols=281 Identities=8% Similarity=-0.008 Sum_probs=192.7
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.....+.++++.++|+..++...++.|.+||.. ++... .........+..+++. +++.++++...++.|..||.. +
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-C
Confidence 445678999999999988877778999999977 43321 1111223568899998 667777777778899999988 5
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
+.. .+........+..+++.+++.++++.... +.|..+|.. ++.. .+........+..++++++
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~ 156 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNG-------------DRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSD 156 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECSTTCEEEEETTT-------------TEEEEECTT-SCEE-EEECSSTTCCEEEEEECTT
T ss_pred CeE-EecCCCCCCCCccceECCCCCEEEEccCC-------------CeEEEECCC-CCEE-EccCCCCCCCceeEEECCC
Confidence 543 22222222568899999999877766544 489999987 5544 3333333456899999999
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
+++.++...++.|..+|. +++.... ...+...+..+++.++++..++....+.|.+|+. ++...... . .
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~-------~ 226 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-I-------P 226 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-C-------S
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-C-------C
Confidence 996666666788999998 5554332 2234457899999999987777777788999998 33222111 0 1
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.....+..++++++|+++++...++.|..++..+.............+.+++++++|+++++.. . .|..++.
T Consensus 227 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 227 TPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2234578999999999776666678999999843222122223446789999999998666655 4 6666654
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.75 E-value=1.2e-15 Score=150.38 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=170.3
Q ss_pred ceEEEEEecCCCeEEEEEcCC-C----cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC---cc
Q 012699 193 EIMSLEWECKSDRLLLIGTAD-G----GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS---SN 264 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~d-g----~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~ 264 (458)
.+..++|+ +++++|+.+..+ | .|++||+.+++........ ..+..++|+||++.|+.+..+..... ..
T Consensus 126 ~~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~---~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 126 ALRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER---VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp EEEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE---ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred EEEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC---cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 57889999 677777765543 3 8999999999876532221 23567999999999998876642100 00
Q ss_pred eeeccceeEEEEECCCCcee--EEeecCCCCCcEEEEEEccCCCEEEEEec-----CCeEEEEeCCC------Cc-eeee
Q 012699 265 IYSWGFASLTVWNMKTWKAM--TVLPLGEDPPAITSLCFNHNGKILAASAV-----DGMIHMFDMSA------GL-QITG 330 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~v~d~~~------~~-~~~~ 330 (458)
-.......|++|++.+++.. ..+....+...+..+.|+|||++|+..+. +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 00011135999999887643 33333334556889999999999988765 56899999986 43 4566
Q ss_pred eeCCCCCeEEEEEcCCCCEEEEecCC----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 331 WPAHDSAISSILFGPDETSIFSLGSD----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 331 ~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.+.....+. .+. .......+..++|++++.++++...
T Consensus 282 l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~----~l~-~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 282 LIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWK----VLV-PEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE----EEE-CCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred eeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccce----ecc-CCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 6667666655 488999887766553 36999999875321000 010 0111135778899988888888888
Q ss_pred Ccc--EEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe----cCCCcEEEEeC
Q 012699 407 SVR--APIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG----SADHSVQVMSL 457 (458)
Q Consensus 407 ~~~--i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~----~~dg~v~iw~l 457 (458)
++. |++|++.+++....+..+.+.+..++++|+++.|+.. ...+.|++||+
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 874 6667775554444555567889999999999755522 24578999986
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.74 E-value=2.9e-15 Score=129.52 Aligned_cols=238 Identities=8% Similarity=0.074 Sum_probs=166.8
Q ss_pred ceEEEEEecCCCeEEE-EEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 193 EIMSLEWECKSDRLLL-IGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
...+++++ +++++++ +...++.|.+||..++...... ......+..+++.+++.++++.. + +
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~~~-~-------------~ 87 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDGAGTVYVTDF-N-------------N 87 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECC--CCSCCSCCCEEECTTCCEEEEET-T-------------T
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEe--eCCcCCcceeEECCCCCEEEEcC-C-------------C
Confidence 67889998 5667666 4467889999998765533221 11224578899999998666654 3 4
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
.|.+||....... .+.. .....+..++++|+|+++++...++.|.+|+..+.............+.+++++|++++++
T Consensus 88 ~i~~~d~~~~~~~-~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 165 (270)
T 1rwi_B 88 RVVTLAAGSNNQT-VLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV 165 (270)
T ss_dssp EEEEECTTCSCCE-ECCC-CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEE
T ss_pred EEEEEeCCCceEe-eeec-CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEE
Confidence 9999998765432 2221 2224689999999998777777788999998765544332223334678899999999777
Q ss_pred EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699 352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI 431 (458)
Q Consensus 352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v 431 (458)
+...++.|.+||......... .......+..++++++|.++++...++.|.+|+..+.........+...+
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p 236 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQVVL---------PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTP 236 (270)
T ss_dssp EEGGGTEEEEECTTTCCEEEC---------CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCE
T ss_pred EECCCCEEEEEecCCCceEee---------cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCc
Confidence 777788999999876533221 01122567899999999777777778899999997754332222344678
Q ss_pred EEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 432 TTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+++++|+|+++++...++.|+++++.
T Consensus 237 ~~i~~~~~g~l~v~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 237 LAVAVDSDRTVYVADRGNDRVVKLTSL 263 (270)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred eeEEECCCCCEEEEECCCCEEEEEcCC
Confidence 999999999988888899999999863
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=1.9e-15 Score=132.62 Aligned_cols=234 Identities=9% Similarity=0.052 Sum_probs=163.7
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
.....+++|+|.+..+++++..++.|..||..++ ...+.... ..+..+++++++.++++...+
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~--~~~~~l~~~~dg~l~v~~~~~------------- 89 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS--HHQNGHCLNKQGHLIACSHGL------------- 89 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC--SSEEEEEECTTCCEEEEETTT-------------
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC--CCcceeeECCCCcEEEEecCC-------------
Confidence 3456789999544458889999999999999987 34443332 568899999999987776554
Q ss_pred eeEEEEECCCCceeEEeec-C-CCCCcEEEEEEccCCCEEEE----Ee-------------cCCeEEEEeCCCCceeeee
Q 012699 271 ASLTVWNMKTWKAMTVLPL-G-EDPPAITSLCFNHNGKILAA----SA-------------VDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~l~~----~~-------------~dg~i~v~d~~~~~~~~~~ 331 (458)
+.|.+||..+++....... . .....+..++++|+|+++++ |+ ..+.|..++.. ++ +..+
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~ 167 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAP 167 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEe
Confidence 3899999988776543321 1 11224577999999998887 33 13467777765 44 3444
Q ss_pred eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccE
Q 012699 332 PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRA 410 (458)
Q Consensus 332 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i 410 (458)
..+......++|+|+++.+++.+.++.|.+|++...+.. ..... + ......+..++++++|+++++. ++.|
T Consensus 168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~---~---~~~~~~p~~i~~d~~G~l~v~~--~~~v 239 (296)
T 3e5z_A 168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVH---F---TVEPGKTDGLRVDAGGLIWASA--GDGV 239 (296)
T ss_dssp ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEE---E---CCSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeE---e---eCCCCCCCeEEECCCCCEEEEc--CCeE
Confidence 556677899999999998888888899999999733332 11111 1 1133456779999999876665 7889
Q ss_pred EEEEccCCCcccccCCCCCcEEEEEE-CCCCCeEEEecCCCcEE
Q 012699 411 PIYQVRGHASGMRTLPHGAAITTVDW-HPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 411 ~i~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~s~~~dg~v~ 453 (458)
.+|+..+ +....+..+.. +++++| .|+++.|++++.++..+
T Consensus 240 ~~~~~~g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 240 HVLTPDG-DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp EEECTTS-CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred EEECCCC-CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 9999874 34444445555 999999 68999888888775433
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.74 E-value=5.2e-15 Score=129.74 Aligned_cols=254 Identities=9% Similarity=0.031 Sum_probs=168.5
Q ss_pred eeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 142 TFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
.+..+.....+++|+|+++ +++++..++.|..|+..++ .. ........+.+++++ ++++++++...++.|.+||
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~---~~~~~~~~~~~l~~~-~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS---PEMHPSHHQNGHCLN-KQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---EEESSCSSEEEEEEC-TTCCEEEEETTTTEEEEEC
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---EEECCCCCcceeeEC-CCCcEEEEecCCCeEEEEc
Confidence 4445667788999999998 7788888999999998876 21 122345678899999 6777777777778999999
Q ss_pred cCCCceeeeccCCC--CCCceeeeeecCCCCeEEEeeccc----CCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 221 VDAKRVVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASR----RYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 221 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
..+++......... ....+..++++|+|.++++..... ............+.|..++.. ++..... .+..
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~---~~~~ 172 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI---RDRV 172 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE---CCCS
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee---cCCC
Confidence 98887544332211 113467899999999888732110 000000000011466667665 4433322 3345
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCC-CCce---eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMS-AGLQ---ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV 370 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 370 (458)
....++|+|+++.+++.+.++.|++||+. +++. ...+..+...+.+++++++|+++++. ++.|.+||.. ++..
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~ 249 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL 249 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence 67899999999988777778999999986 4544 23333345567789999999866665 7899999986 3322
Q ss_pred EEeecCCcccCCCCCCCceeEEEE-ccCCCEEEEEeCCccEEEEEccCC
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMAL-DVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~-s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
... . .... +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 250 ~~~-~--------~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 250 GRV-L--------TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEE-E--------CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEE-E--------CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 211 1 1222 788899 68999999988764 444555443
No 189
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=8.9e-15 Score=126.06 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=167.0
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
..+++|++++.++.|.+||.++++.+.++..+.. ..+.++.+.|+++++++. + +.|..||. ++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--~-------------~~V~~~d~-~G 65 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--S-------------KGAKMITR-DG 65 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--B-------------SEEEEECT-TS
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--C-------------CCEEEECC-CC
Confidence 3468899999999999999999999988876532 357889999999988842 3 38999999 88
Q ss_pred ceeEEeecCCCCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeC------CCCCeEEEEEcCCCCEEEEec
Q 012699 282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPA------HDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~ 354 (458)
+.+..+... ....+.++.+.|+|+++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++..
T Consensus 66 ~~~W~~~~~-~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 66 RELWNIAAP-AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp CEEEEEECC-TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred CEEEEEcCC-CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 988888753 2346889999999999999887 788888885 6777766642 222455677889999999999
Q ss_pred CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCC------C
Q 012699 355 SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPH------G 428 (458)
Q Consensus 355 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h------~ 428 (458)
.++.|..||.. + +.++..... ..+..+...++|++++++..+++|..+|..+++.+.++..+ .
T Consensus 144 ~~~~v~~~d~~-G-~~~w~~~~~---------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l 212 (276)
T 3no2_A 144 ATSEVREIAPN-G-QLLNSVKLS---------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQL 212 (276)
T ss_dssp TTTEEEEECTT-S-CEEEEEECS---------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCC
T ss_pred CCCEEEEECCC-C-CEEEEEECC---------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccc
Confidence 99999999987 4 445443321 23556788899999999988889999999977766555422 2
Q ss_pred CcEEEEEECCCCCeEEEe
Q 012699 429 AAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 429 ~~v~~~~~~~~~~~l~s~ 446 (458)
..+..++..++|.++++.
T Consensus 213 ~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 213 FFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp SEEEEEEECTTSCEEEEE
T ss_pred cccccceEcCCCCEEEEe
Confidence 348889999999988776
No 190
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.72 E-value=1.4e-14 Score=125.14 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=166.9
Q ss_pred CeEEEEeCCCCCEEE-EEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 149 PISCCRFSSSGNNIA-SASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
...++++++++++++ +...++.|.+|+..+..... ........+.+++++ ++++++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--LPFNGLYQPQGLAVD-GAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--CCCCSCCSCCCEEEC-TTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--EeeCCcCCcceeEEC-CCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 677899999998777 44678899999876543221 112223467889998 5666666655 889999998766543
Q ss_pred eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699 228 CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI 307 (458)
Q Consensus 228 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (458)
. +.. .....+..+++.+++.++++...+ +.|.+|+..+...... .......+..++++|+|++
T Consensus 101 ~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~-------------~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l 163 (270)
T 1rwi_B 101 V-LPF-DGLNYPEGLAVDTQGAVYVADRGN-------------NRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNV 163 (270)
T ss_dssp E-CCC-CSCSSEEEEEECTTCCEEEEEGGG-------------TEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCE
T ss_pred e-eec-CCcCCCcceEECCCCCEEEEECCC-------------CEEEEEECCCceeEee--ccccCCCceeEEEeCCCCE
Confidence 2 221 122468899999999877665544 4899997665443321 1222235788999999987
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
+++...++.|.+||............+...+.+++++++|..+++...++.|.+|+........ .......
T Consensus 164 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---------~~~~~~~ 234 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---------LPFTGLN 234 (270)
T ss_dssp EEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE---------CCCCSCS
T ss_pred EEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee---------eccCCCC
Confidence 7776678899999988765544333334678999999999877777778899999987543211 0111224
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
.+..++++|+|+++++...+++|+++++...+
T Consensus 235 ~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 235 TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 68899999999988888889999999997664
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=1.1e-15 Score=150.42 Aligned_cols=292 Identities=10% Similarity=-0.019 Sum_probs=179.2
Q ss_pred CCCCCEEEEEeCCC---cEEEEecC--CCCCCCccc----cccCCCceEEEEEecCCCeEEEE-----EcCCCcEEEEEc
Q 012699 156 SSSGNNIASASVDG---TVRIWTYD--SSTPASRNA----TIYCGTEIMSLEWECKSDRLLLI-----GTADGGIKAWNV 221 (458)
Q Consensus 156 ~~~~~~l~s~~~dg---~v~iwd~~--~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~i~~wd~ 221 (458)
+|+|++++....++ .-.+|... ++....... ...+...+..++|+ +++++|+. |+.+..|++||+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEEC
Confidence 36788877665443 34455443 332211100 01122368899999 67777763 333468999999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCce--eEEeecCCCCCcEEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSL 299 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~ 299 (458)
.+++......... .....++|+|+++.++.++.+...............|++|++.++.. ...+....+...+..+
T Consensus 155 ~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 155 DSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 9988651111111 11267999999999998877542100000011123699999998764 2344434455678999
Q ss_pred EEccCCCEEEEEecCC----eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec---CCCeEEEEeccCCCeeEE
Q 012699 300 CFNHNGKILAASAVDG----MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG---SDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~ 372 (458)
.|+|+|++|+.++.++ .|++++..+++ ...+..+...+....+ ++|.+++... .++.|.+||+.+.....+
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887766 78888766554 4445556666667767 5666444443 257899999976542100
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC-CCcccccCC-CCCcEEEEEECCCCCeEE----Ee
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG-HASGMRTLP-HGAAITTVDWHPTLPMFL----TG 446 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~----s~ 446 (458)
. .+. .......+..++++ ++.++++...++..+||.+.. +.....+.. +...+..++++|+++.|+ +.
T Consensus 311 ~----~l~-~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 384 (695)
T 2bkl_A 311 K----EIV-PEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384 (695)
T ss_dssp E----EEE-CCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEET
T ss_pred e----EEe-cCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 0 000 01113457778888 778888888888877776652 222333333 367888899999998666 33
Q ss_pred cCCCcEEEEeCC
Q 012699 447 SADHSVQVMSLS 458 (458)
Q Consensus 447 ~~dg~v~iw~l~ 458 (458)
...++|++||+.
T Consensus 385 ~~P~~v~~~d~~ 396 (695)
T 2bkl_A 385 TTPRQIYKTSVS 396 (695)
T ss_dssp TEEEEEEEEETT
T ss_pred CCCCEEEEEECC
Confidence 345789999863
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.70 E-value=2.3e-14 Score=127.35 Aligned_cols=255 Identities=11% Similarity=0.041 Sum_probs=172.0
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
....+.+. +++.+++...++.|.+||..+++.... .........++++ +++.++++...++.|.+||..+++...
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~---i~~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~ 119 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR---ITGFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITG 119 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE---EECCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE---cCCCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEE
Confidence 34567764 345556666789999999998876532 2345678899998 455655555488999999999998877
Q ss_pred eccCCCC---CCceeeeeecCCCCeEEEee-cccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 229 DLNTTDA---FPSVLDLKCSPVEPIFVSAA-ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 229 ~~~~~~~---~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
.+..... ......+++ .++..+++.. .+ +.|.++|+.+++....+..... ...++++|+
T Consensus 120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~-------------~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~d 182 (328)
T 3dsm_A 120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQ-------------NRILKIDTETDKVVDELTIGIQ---PTSLVMDKY 182 (328)
T ss_dssp EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTC-------------CEEEEEETTTTEEEEEEECSSC---BCCCEECTT
T ss_pred EEEcCCccccCCCcceEEE-ECCEEEEEcCCCC-------------CEEEEEECCCCeEEEEEEcCCC---ccceEEcCC
Confidence 6654431 013456666 3343444332 13 5999999999998888765432 467899999
Q ss_pred CCEEEEEecC----------CeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 305 GKILAASAVD----------GMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 305 ~~~l~~~~~d----------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
|++++++..+ +.|.++|..+++....+... ......++|+|+++.|+++.. .|.+||..+.+...
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-- 258 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-- 258 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS--
T ss_pred CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee--
Confidence 9877766554 78999999988877776543 246899999999998888765 89999998654210
Q ss_pred ecCCcccCCCCCCCceeEEEEccCCCEEEEE-----eCCccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699 374 RNCSRFCDPESSKSCRHEMALDVNGRRLLVT-----SGSVRAPIYQVRGHASGMRTLPHGAAITTVDW 436 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-----~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~ 436 (458)
..+. ......+..++++|++..|+++ ..++.|.+||.. ++.+..+. -......++|
T Consensus 259 ---~~~~--~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~-~G~~P~~~~~ 319 (328)
T 3dsm_A 259 ---RPFL--EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY-VGIIPGAFCW 319 (328)
T ss_dssp ---SCSB--CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE-EEESEEEEEE
T ss_pred ---eeee--cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE-eccCcceEEE
Confidence 0111 1114568899999955555444 467899999998 44333332 2233445555
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=4.4e-15 Score=133.44 Aligned_cols=205 Identities=15% Similarity=0.105 Sum_probs=142.8
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
++.|.+||+.+++.... ..+..+.|+|+++.++....+... +...|.+||+.+++........
T Consensus 42 ~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~--------~~~~l~~~~~~~g~~~~l~~~~-- 104 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEK--------KVSEIWVADLETLSSKKILEAK-- 104 (347)
T ss_dssp EEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTT--------TEEEEEEEETTTTEEEEEEEES--
T ss_pred cceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCC--------CcceEEEEECCCCceEEEEcCC--
Confidence 56799999998875432 357789999999998887654200 1136889999887766655422
Q ss_pred CCcEEEEEEccCCCEEEEEecC---------------------------CeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699 293 PPAITSLCFNHNGKILAASAVD---------------------------GMIHMFDMSAGLQITGWPAHDSAISSILFGP 345 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 345 (458)
. +..++|+|+|+.|+.++.+ ..|++||+.+++.+..+.. . .+..++|+|
T Consensus 105 -~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp 180 (347)
T 2gop_A 105 -N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR 180 (347)
T ss_dssp -E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET
T ss_pred -C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC
Confidence 3 8999999999998887642 5799999988876455554 3 788999999
Q ss_pred CCCEEEEecCCC-------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC--------ccE
Q 012699 346 DETSIFSLGSDG-------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS--------VRA 410 (458)
Q Consensus 346 ~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~--------~~i 410 (458)
+| +++++..++ ...+|.+. .+....... . ..+.. ++|||++|+.++.+ ..|
T Consensus 181 dg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~---------~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l 246 (347)
T 2gop_A 181 DK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE---------K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKL 246 (347)
T ss_dssp TE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE---------E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEE
T ss_pred Ce-EEEEEecccccccccccccEEEeC-CCceEEecc---------C-cceee--ECCCCCEEEEEEccccCCccccceE
Confidence 99 777775542 44555554 333222111 1 22333 39999999887754 367
Q ss_pred EEEEccCCCcccccCCCCCcEEE-EEECCCCCeEEEecCCCcEEEEeC
Q 012699 411 PIYQVRGHASGMRTLPHGAAITT-VDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 411 ~i~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
++|| ++.......+|...+.. +.|+ ++ ++++++.++.++|| +
T Consensus 247 ~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 247 YIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-E
T ss_pred EEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-E
Confidence 8887 33322223356778886 9999 88 89999999999999 6
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.69 E-value=1.2e-13 Score=124.22 Aligned_cols=278 Identities=7% Similarity=-0.033 Sum_probs=182.8
Q ss_pred eCCCCCEEEEEeC--CC---cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEE
Q 012699 155 FSSSGNNIASASV--DG---TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAW 219 (458)
Q Consensus 155 ~~~~~~~l~s~~~--dg---~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~w 219 (458)
..|++++++.... .. +|.++|..+++... ....+... .++++ ++++.++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~---~i~~g~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP-NPVAA-HSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEE---EecCCCCC-CeEEC-CCCCEEEEEeccccccccCCCCCeEEEE
Confidence 3467777766653 22 88999998877543 22223333 89999 6777777764 36789999
Q ss_pred EcCCCceeeeccCC-CC----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEE-eecCCC
Q 012699 220 NVDAKRVVCDLNTT-DA----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTV-LPLGED 292 (458)
Q Consensus 220 d~~~~~~~~~~~~~-~~----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~~~~~~ 292 (458)
|..+.+.+..+... .. ......+.++|++++++.+... . +.|.++| .+++.... +....
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~------------~~v~viD-~t~~~~~~~i~~~~- 168 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG------------PAVGLVV-QGGSSDDQLLSSPT- 168 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC------------CeEEEEE-CCCCEEeEEcCCCc-
Confidence 99998887776543 10 0235589999999999987642 2 4899999 99988877 64322
Q ss_pred CCcEEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeeeee-----CCCCCe-EEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 293 PPAITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITGWP-----AHDSAI-SSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 293 ~~~i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
++.+.|++ +.+++.+.||.+.++|. +++...... ....++ ....+.+++..++..+.++.+.+.|+.
T Consensus 169 -----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 169 -----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred -----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 24455654 45566778999999999 777663322 112222 234566666555555578899999997
Q ss_pred CCCeeEEe-ecC--CcccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcEE
Q 012699 366 NQGQVLWT-RNC--SRFCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAIT 432 (458)
Q Consensus 366 ~~~~~~~~-~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~ 432 (458)
........ ... ...............++++|+++.++++.. .+.|.++|..+.+.+..+. ......
T Consensus 243 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~ 321 (373)
T 2mad_H 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVD 321 (373)
T ss_pred CCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcC
Confidence 54322111 000 000011112233455889999999888754 3579999999886655553 334689
Q ss_pred EEEECCCCC-eEEEec-CCCcEEEEeCC
Q 012699 433 TVDWHPTLP-MFLTGS-ADHSVQVMSLS 458 (458)
Q Consensus 433 ~~~~~~~~~-~l~s~~-~dg~v~iw~l~ 458 (458)
+++|+|||+ +|+++. .++.|.+||+.
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 999999999 788777 58999999973
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=1.8e-14 Score=142.08 Aligned_cols=251 Identities=7% Similarity=-0.019 Sum_probs=167.9
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCC-----cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc----
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDG-----TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG---- 215 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---- 215 (458)
+|...+..++|||||++||.+..++ +|++||+.+++.... .. ....+..++|+ ++++.|+.+..++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~-~~~~~~~~~ws-pDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL-ERVKFSCMAWT-HDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE-EEECSCCEEEC-TTSSEEEEEECCCCSSCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc-cCcccceEEEE-eCCCEEEEEEECCccccc
Confidence 3555688999999999998776543 899999998875431 11 12236678999 67777777777655
Q ss_pred ------------EEEEEcCCCcee--eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-
Q 012699 216 ------------IKAWNVDAKRVV--CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT- 280 (458)
Q Consensus 216 ------------i~~wd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~- 280 (458)
|++|++.+++.. ..+....+...+..+.|+|+++.++........ ....|.+||+.+
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~~l~~~d~~~~ 269 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD--------PVNRLWYCDLQQE 269 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS--------SCCEEEEEEGGGS
T ss_pred cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC--------CccEEEEEECccc
Confidence 999999887632 222333223457789999999998887653210 024899999976
Q ss_pred -----Cc-eeEEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCCc--eeeeeeCCCC--CeEEEEEcCC
Q 012699 281 -----WK-AMTVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAGL--QITGWPAHDS--AISSILFGPD 346 (458)
Q Consensus 281 -----~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~~--~~~~~~~~~~--~v~~~~~~~~ 346 (458)
+. ....+. .+...+.. .|+|+|+.|+..+.. +.|.+||+.++. ....+..|.. .+..++|+++
T Consensus 270 ~~~~~~~~~~~~l~--~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 270 SNGITGILKWVKLI--DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp SSSSCSSCCCEEEE--CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred ccccCCccceEEee--CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 43 234443 22233333 588999888776653 369999998764 2344555544 6888999887
Q ss_pred CCEEEEecCCCe--EEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699 347 ETSIFSLGSDGK--IIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA 419 (458)
Q Consensus 347 ~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~ 419 (458)
+.++++...|+. |.+|++.+++..... ..+...+..++++|+++.++.... .+++++||+.+++
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l---------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIF---------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEE---------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEec---------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 778888888885 555666444422211 112556888999999987765433 3689999998765
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.68 E-value=4.2e-15 Score=146.16 Aligned_cols=250 Identities=8% Similarity=-0.043 Sum_probs=164.4
Q ss_pred cCCCCeEEEEeCCCCCEEEE-----EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc----
Q 012699 145 GHTSPISCCRFSSSGNNIAS-----ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG---- 215 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~---- 215 (458)
+|...+..++|||||++||. |+.+.+|++||+.+++.... ... .......++|+ ++++.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~-~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVI-EGGKYATPKWT-PDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCB-SCCTTCCCEEC-TTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-ccc-CcccccceEEe-cCCCEEEEEEecCCCCCc
Confidence 56667899999999999983 44457899999998875411 111 11222678999 67778888877765
Q ss_pred ---------EEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 216 ---------IKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 216 ---------i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
|++|++.++.. ...+....+...+..+.++|+|+.++..+.+.. ....|.+++..+++..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---------~~~~l~~~~~~~~~~~ 265 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW---------SENDVYWKRPGEKDFR 265 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT---------TEEEEEEECTTCSSCE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC---------CceEEEEEcCCCCceE
Confidence 99999998762 233333333346889999999998887765421 1137788877665544
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCce--eeeeeCC--CCCeEEEEEcCCCCEEEEecCC
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGLQ--ITGWPAH--DSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d 356 (458)
.... +...+....+ ++|+ ++..+. ++.|.+||+.+++. ...+..+ ...+..++|+ ++.++++...|
T Consensus 266 ~l~~---~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d 339 (695)
T 2bkl_A 266 LLVK---GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD 339 (695)
T ss_dssp EEEE---CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred Eeec---CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 4332 2233455556 5666 544443 57899999987653 2333333 4467888888 66788888889
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA 419 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~ 419 (458)
+..++|.+...+...... .......+..++++|+++.++.... .+++++||+.+++
T Consensus 340 g~~~l~~~~~~g~~~~~l-------~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 340 ATSEVRVATLKGKPVRTV-------QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TEEEEEEEETTCCEEEEC-------CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEEEEeCCCCeeEEe-------cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 998888766322211110 0112456777889999987775443 3789999998764
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=7.4e-13 Score=116.09 Aligned_cols=237 Identities=12% Similarity=0.046 Sum_probs=168.0
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..+.+++++ +++.++++...++.|.+||.. ++... +........+..+++.+++.++++...+ +
T Consensus 15 ~~~~~i~~d-~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------------~ 78 (299)
T 2z2n_A 15 TGPYGITVS-DKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSDGEVWFTENAA-------------N 78 (299)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-------------T
T ss_pred CCccceEEC-CCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCCCCEEEeCCCC-------------C
Confidence 567899998 677777776668899999988 55432 2222222568899999999887776544 4
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee-eeCCCCCeEEEEEcCCCCEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG-WPAHDSAISSILFGPDETSI 350 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l 350 (458)
.|..||.. ++ ...+........+..++++|+++++++...++.|.+||. +++.... ...+...+..+++.++++.+
T Consensus 79 ~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 79 KIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp EEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred eEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 89999986 33 333433333456899999999988887777889999998 5544322 23345678999999999888
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc-ccCCCCC
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM-RTLPHGA 429 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~-~~~~h~~ 429 (458)
++...++.|..||. ++.... ... ......+..++++++|+++++...++.|.+|+. ++.... ....+..
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~-~~~-------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 225 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE-FKI-------PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNA 225 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EEC-------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTC
T ss_pred EEeCCCCEEEEEcC-CCcEEE-eeC-------CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCC
Confidence 87777889999998 433221 100 112345788999999997776666888999998 443221 1223556
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+.+++++++|+++++...++.|..|+.
T Consensus 226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 226 RPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CceeEEECCCCCEEEeccCCceEEEECC
Confidence 7999999999997777767788988875
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.66 E-value=6e-14 Score=138.95 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=175.6
Q ss_pred CCCCCEEEEEeCCCc---EEEEecCC-----CCCCCcc----ccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEE
Q 012699 156 SSSGNNIASASVDGT---VRIWTYDS-----STPASRN----ATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKA 218 (458)
Q Consensus 156 ~~~~~~l~s~~~dg~---v~iwd~~~-----~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~ 218 (458)
+|+|++++....++. -.+|.... +...... ....+...+..++|+ +++++|+.+..+ ..|++
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEEC-TTSSEEEEEEEETTCSEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEcCCCCceEEEEE
Confidence 378888776654433 55665432 2211100 011112367889999 677777665443 35999
Q ss_pred EEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCC-CcceeeccceeEEEEECCCCce--eEEeecCCCCCc
Q 012699 219 WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYG-SSNIYSWGFASLTVWNMKTWKA--MTVLPLGEDPPA 295 (458)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~ 295 (458)
||+.+++.+.... .. ..+..++|+|+ +.++.+..+.... ...........|++|++.++.. ...+....+...
T Consensus 194 ~dl~tg~~~~~~~-~~--~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 194 VGVADGKPLADEL-KW--VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp EETTTCCEEEEEE-EE--EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred EECCCCCCCCccC-CC--ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 9999998754311 11 12357899999 8888877654210 0000001123699999987663 233333333345
Q ss_pred EEEEEEccCCCEEEEEecCC-----eEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCCCCEEEEecC----CCeEEEEec
Q 012699 296 ITSLCFNHNGKILAASAVDG-----MIHMFDMSAG--LQITGWPAHDSAISSILFGPDETSIFSLGS----DGKIIEWSL 364 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~ 364 (458)
+..+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+. ++.|.+||+
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~ 348 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL 348 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence 88999999999998877654 8999999876 41455555555555554 488988887765 345999998
Q ss_pred cCCC-eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEcc-CCCcccccC-CCCCcEEEEEECCCCC
Q 012699 365 QNQG-QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVR-GHASGMRTL-PHGAAITTVDWHPTLP 441 (458)
Q Consensus 365 ~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~ 441 (458)
.+.. ....... .....+..++++ ++.++++...++..+||.++ .+.....+. ++...+..++++|+++
T Consensus 349 ~~~~~~~~~l~~--------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 349 SGSTPRFDTVVP--------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp SSSSCEEEEEEC--------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred CCCccccEEEec--------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 7642 2211110 122346667777 66777778888876666554 222222332 3467899999999998
Q ss_pred eEE----EecCCCcEEEEeCC
Q 012699 442 MFL----TGSADHSVQVMSLS 458 (458)
Q Consensus 442 ~l~----s~~~dg~v~iw~l~ 458 (458)
.|+ +....++|++||+.
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp CEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEEcCCCCCCEEEEEECC
Confidence 666 33345789999863
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.64 E-value=2e-13 Score=120.66 Aligned_cols=245 Identities=12% Similarity=0.154 Sum_probs=163.7
Q ss_pred ceEEEEEecCCCeEEEE-------EcCCCcEEEEEcCCCceeeeccC--CCCCCceeeeeecCC-CCeEEEeecccCCCC
Q 012699 193 EIMSLEWECKSDRLLLI-------GTADGGIKAWNVDAKRVVCDLNT--TDAFPSVLDLKCSPV-EPIFVSAAASRRYGS 262 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~-------~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~ 262 (458)
...+++|+ +++.++++ +..++.|..||..+++....... ......+..++++++ +.++++...+
T Consensus 19 ~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~----- 92 (314)
T 1pjx_A 19 GAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL----- 92 (314)
T ss_dssp TCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-----
T ss_pred CccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-----
Confidence 45788998 67777776 56788999999888776432210 001145888999999 7655554432
Q ss_pred cceeeccceeEEEEECCCCceeEE-eecC--CCCCcEEEEEEccCCCEEEEEecC---------------CeEEEEeCCC
Q 012699 263 SNIYSWGFASLTVWNMKTWKAMTV-LPLG--EDPPAITSLCFNHNGKILAASAVD---------------GMIHMFDMSA 324 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------------g~i~v~d~~~ 324 (458)
.|.+||.. ++.... .... .....+..++++++|+++++...+ +.|..||..
T Consensus 93 ---------~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 93 ---------GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp ---------EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred ---------CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 78899988 665433 2211 112347899999999877776554 578888866
Q ss_pred CceeeeeeCCCCCeEEEEEc----CCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCC-CceeEEEEccCC
Q 012699 325 GLQITGWPAHDSAISSILFG----PDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK-SCRHEMALDVNG 398 (458)
Q Consensus 325 ~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g 398 (458)
++... +..+......++|+ |+++.|+.+ ..++.|.+||+........... +....... ..+..++++++|
T Consensus 162 g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~p~~i~~d~~G 237 (314)
T 1pjx_A 162 GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV---WGHIPGTHEGGADGMDFDEDN 237 (314)
T ss_dssp SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE---EEECCCCSSCEEEEEEEBTTC
T ss_pred CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceE---EEECCCCCCCCCCceEECCCC
Confidence 54433 22334456889999 999765544 5688999999863222111000 00011122 457889999999
Q ss_pred CEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEecCCCcEEEEeCC
Q 012699 399 RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGSADHSVQVMSLS 458 (458)
Q Consensus 399 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iw~l~ 458 (458)
+++++...++.|.+|+..+++....+..+...+.+++|+|+++ ++++...++.|..|+++
T Consensus 238 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 238 NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 9888887888999999985544444445557899999999999 55566667889988863
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.63 E-value=3.2e-13 Score=116.28 Aligned_cols=238 Identities=12% Similarity=0.085 Sum_probs=171.6
Q ss_pred ccceeEeeccCCCcccccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCC-CCeEEEEeCCCC
Q 012699 81 ALSRFATNMSGNDSISPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHT-SPISCCRFSSSG 159 (458)
Q Consensus 81 ~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~ 159 (458)
..++++++++.++.+.+|+.+... .+..+..+. ..+.++.++|+|
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~----------------------------------~~w~~~~~~~~~~~~~~~~pdG 48 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKE----------------------------------IVWEYPLEKGWECNSVAATKAG 48 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTE----------------------------------EEEEEECCTTCCCCEEEECTTS
T ss_pred CCCcEEEeeCCCCEEEEEECCCCe----------------------------------EEEEeCCCccCCCcCeEECCCC
Confidence 456889999999999999864422 334444454 468899999999
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CCcEEEEEcCCCceeeeccCCC----
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DGGIKAWNVDAKRVVCDLNTTD---- 234 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~---- 234 (458)
++|+ +.++.|..||. +++.+..... .....+.++.+. ++++++++.+. ++.+..+|. +++.+..+....
T Consensus 49 ~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~ 122 (276)
T 3no2_A 49 EILF--SYSKGAKMITR-DGRELWNIAA-PAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIER 122 (276)
T ss_dssp CEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSS
T ss_pred CEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCc
Confidence 9888 34778999998 6665432221 123467888888 78888888776 778888886 566665554321
Q ss_pred CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
.......+...+++.++++...+ +.|..||.+ ++.+..+.... .+.++...++|++++++..+
T Consensus 123 ~~~~~~~v~~~~~G~~lv~~~~~-------------~~v~~~d~~-G~~~w~~~~~~---~~~~~~~~~~g~~~v~~~~~ 185 (276)
T 3no2_A 123 PHAQFRQINKNKKGNYLVPLFAT-------------SEVREIAPN-GQLLNSVKLSG---TPFSSAFLDNGDCLVACGDA 185 (276)
T ss_dssp GGGSCSCCEECTTSCEEEEETTT-------------TEEEEECTT-SCEEEEEECSS---CCCEEEECTTSCEEEECBTT
T ss_pred ccccccCceECCCCCEEEEecCC-------------CEEEEECCC-CCEEEEEECCC---CccceeEcCCCCEEEEeCCC
Confidence 11235567788999999887766 599999998 89988887543 34567788999999998888
Q ss_pred CeEEEEeCCCCceeeeeeCCC------CCeEEEEEcCCCCEEEEec--CC------CeEEEEeccCCCeeEEeec
Q 012699 315 GMIHMFDMSAGLQITGWPAHD------SAISSILFGPDETSIFSLG--SD------GKIIEWSLQNQGQVLWTRN 375 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~--~d------g~i~iwd~~~~~~~~~~~~ 375 (458)
+.|..+|..+++.+.++..+. ..+..++..++|..+++.. .. +..+++++...+++.|...
T Consensus 186 ~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 186 HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 899999999999988886432 2378888899998888763 21 2446777766666666543
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.62 E-value=2e-13 Score=123.32 Aligned_cols=278 Identities=8% Similarity=0.038 Sum_probs=184.2
Q ss_pred CCCCEEEEEeC-C----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEc
Q 012699 157 SSGNNIASASV-D----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNV 221 (458)
Q Consensus 157 ~~~~~l~s~~~-d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~ 221 (458)
|++++++.... + ++|.++|..+.+.+.... .+... .+.++ +++++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~---vG~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD---GGFLP-HPVAA-EDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE---ECSSC-EEEEC-TTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE---CCCCC-ceEEC-CCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 46666655544 2 699999998887654322 22333 89999 5666666654 4678999999
Q ss_pred CCCceeeeccCC--CC---CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc
Q 012699 222 DAKRVVCDLNTT--DA---FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA 295 (458)
Q Consensus 222 ~~~~~~~~~~~~--~~---~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~ 295 (458)
.+++.+..+... .. ......+.++|++++++.+... . +.|.+.|+.+++.+..+...+.
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~------------~~VsVID~~t~kvv~~I~v~g~--- 221 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA------------PAVGVVDLEGKTFDRMLDVPDC--- 221 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS------------CEEEEEETTTTEEEEEEECCSE---
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC------------CeEEEEECCCCeEEEEEEcCCc---
Confidence 999988877643 10 1245689999999999887642 2 4899999999999988875331
Q ss_pred EEEEEEccCC-CEEEEEecCCeEEEEeCCCCceeee----eeCCCCCe-EEEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 296 ITSLCFNHNG-KILAASAVDGMIHMFDMSAGLQITG----WPAHDSAI-SSILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 296 i~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
....|++ +.+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..+.+.+.|+.....
T Consensus 222 ---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~ 298 (426)
T 3c75_H 222 ---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA 298 (426)
T ss_dssp ---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE
T ss_pred ---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce
Confidence 2333433 5566667788888888755554422 22212222 2356789988887778889999999975432
Q ss_pred eEEee-cCC--cccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcEEEEEE
Q 012699 370 VLWTR-NCS--RFCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAITTVDW 436 (458)
Q Consensus 370 ~~~~~-~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~ 436 (458)
..... ... ..............++++|+++.+++... .+.|.++|..+.+.+..+. -.....+++|
T Consensus 299 ~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-vg~~P~gia~ 377 (426)
T 3c75_H 299 TFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-LGHEIDSINV 377 (426)
T ss_dssp EECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEE
T ss_pred EEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-CCCCcCeEEE
Confidence 21100 000 00000001112234789999998888753 4579999999987665554 2236899999
Q ss_pred CCCCC-eEEEec-CCCcEEEEeCC
Q 012699 437 HPTLP-MFLTGS-ADHSVQVMSLS 458 (458)
Q Consensus 437 ~~~~~-~l~s~~-~dg~v~iw~l~ 458 (458)
+||++ +|+++. .++.|.|+|+.
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETT
T ss_pred ccCCCEEEEEEcCCCCeEEEEECC
Confidence 99999 888877 58999999963
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.61 E-value=1.1e-12 Score=114.73 Aligned_cols=228 Identities=11% Similarity=0.094 Sum_probs=153.9
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
..+..|+|.++.++++...++.|..||..+++.. .+... ..+..+++++++.++++. . +.|
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~---~~~~~i~~~~dG~l~v~~-~--------------~~l 75 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMD---APVSSVALRQSGGYVATI-G--------------TKF 75 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECS---SCEEEEEEBTTSSEEEEE-T--------------TEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCC---CceEEEEECCCCCEEEEE-C--------------CeE
Confidence 4578899667888888888999999999987653 22222 468899999999965553 2 289
Q ss_pred EEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEec-----------CCeEEEEeCCCCceeeeeeCCCCCeEE
Q 012699 274 TVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV-----------DGMIHMFDMSAGLQITGWPAHDSAISS 340 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~ 340 (458)
.+||..+++......... ....++.++++|+|+++++... .+.|+.++.. ++.. .+..+....+.
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~png 153 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNG 153 (297)
T ss_dssp EEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEE
T ss_pred EEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccc
Confidence 999998876654433221 2235789999999996665422 2345555543 3332 23333445689
Q ss_pred EEEcCCCCEEE-EecCCCeEEEEecc-CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 341 ILFGPDETSIF-SLGSDGKIIEWSLQ-NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 341 ~~~~~~~~~l~-~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
++|+|+++.|+ +.+.++.|.+|++. ......... .+.........+..++++++|++.++....+.|..|+..++
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~---~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR---SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE---EEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE---EEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 99999998765 55668899999984 222221110 01111112345788999999988888778889999999877
Q ss_pred CcccccCCCCCcEEEEEEC-CCCCeEEE
Q 012699 419 ASGMRTLPHGAAITTVDWH-PTLPMFLT 445 (458)
Q Consensus 419 ~~~~~~~~h~~~v~~~~~~-~~~~~l~s 445 (458)
+....+..+...+++++|. |+++.|+.
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred eEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence 6555555566789999998 88875543
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=6.8e-12 Score=109.96 Aligned_cols=239 Identities=12% Similarity=0.081 Sum_probs=168.5
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccc
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGF 270 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (458)
...+.++++. +++.++++...++.|.+||.. ++... +........+..+++.+++.++++...+
T Consensus 19 ~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~------------- 82 (300)
T 2qc5_A 19 DSGPYGITSS-EDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA------------- 82 (300)
T ss_dssp TCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT-------------
T ss_pred CCCcceeeEC-CCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC-------------
Confidence 3567889988 667777777778999999988 55433 2222223568899999999877765544
Q ss_pred eeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceee-eeeCCCCCeEEEEEcCCCCE
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQIT-GWPAHDSAISSILFGPDETS 349 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 349 (458)
+.|..+|.. ++. ..+........+..++++++++++++...++.|..+|.. ++... .+......+..+++.++++.
T Consensus 83 ~~v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 83 NKIGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TEEEEECTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CeEEEECCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 489999988 554 334333334568999999999887777668899999987 55442 23334567899999999997
Q ss_pred EEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCC
Q 012699 350 IFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGA 429 (458)
Q Consensus 350 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~ 429 (458)
+++...++.|..+|. +..... .. .......+..++++++|+++++....+.|.+++............+..
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~-~~-------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~ 230 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEE-YP-------LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA 230 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEE-EE-------CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC
T ss_pred EEEecCCCeEEEECC-CCcEEE-ee-------CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC
Confidence 777766889999998 333221 11 012234578999999998777666677899999843322222223456
Q ss_pred cEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 430 AITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 430 ~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.+.+++++++|+++++...++.|..|+.
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC
Confidence 7899999999997777767788888874
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=1.2e-11 Score=111.23 Aligned_cols=240 Identities=14% Similarity=0.028 Sum_probs=156.2
Q ss_pred EEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccc-----cCCCceEEEEEecCCCeEEEEEcC--CC
Q 012699 152 CCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATI-----YCGTEIMSLEWECKSDRLLLIGTA--DG 214 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~--dg 214 (458)
.++++|||++++.+. .++.|.+||..+.+........ ........+.|+ +++++|+++.. ++
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~ 148 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGP 148 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCC
Confidence 899999999998875 3678999999876654322111 001234578899 67777777664 57
Q ss_pred cEEEEEcCCCceeee-ccCCCCCCceeeeeecCCCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---
Q 012699 215 GIKAWNVDAKRVVCD-LNTTDAFPSVLDLKCSPVEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL--- 289 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~--- 289 (458)
.|.++| .+++.+.. +.... ++.+.|+++ .+++...+ |.+.++|. +++.......
T Consensus 149 ~v~viD-~t~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~d-------------g~~~~vd~-~g~~~~~~~~~~~ 207 (373)
T 2mad_H 149 AVGLVV-QGGSSDDQLLSSPT------CYHIHPGAPSTFYLLCAQ-------------GGLAKTDH-AGGAAGAGLVGAM 207 (373)
T ss_pred eEEEEE-CCCCEEeEEcCCCc------eEEEEeCCCceEEEEcCC-------------CCEEEEEC-CCcEEEEEecccc
Confidence 899999 99988877 65432 134445554 33333333 68899999 7766633221
Q ss_pred -CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCC----------CCCeEEEEEcCCCCEEEEecC-
Q 012699 290 -GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAH----------DSAISSILFGPDETSIFSLGS- 355 (458)
Q Consensus 290 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~- 355 (458)
.+.........+.+++..++..+..+.+.+.|+.... .+..+... ......++++|+++.+++...
T Consensus 208 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 208 LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEecc
Confidence 1111112335567766555555578899999987542 22222211 123445789999988877643
Q ss_pred ---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEEEccCCCcccc
Q 012699 356 ---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIYQVRGHASGMR 423 (458)
Q Consensus 356 ---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~~~~~~~~~~~ 423 (458)
++.|.++|..+.+...... .......++|+|||+ +++++. .++.|.++|..+.+....
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~----------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQIS----------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEE----------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 3579999998765543321 122478899999999 777777 489999999998876554
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=4e-13 Score=119.09 Aligned_cols=281 Identities=8% Similarity=0.006 Sum_probs=184.6
Q ss_pred EEeCCCCCEEEEEeC-----CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEE
Q 012699 153 CRFSSSGNNIASASV-----DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIK 217 (458)
Q Consensus 153 ~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~ 217 (458)
....|+++.++.... ++.|.+.|..+.+.+... ..+.... ++++ +++++++++. .++.|.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I---~vG~~P~-va~s-pDG~~lyVan~~~~r~~~G~~~~~Vs 112 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---DGGFLPN-PVVA-DDGSFIAHASTVFSRIARGERTDYVE 112 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---EECSSCE-EEEC-TTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEE---ECCCCCc-EEEC-CCCCEEEEEcccccccccCCCCCEEE
Confidence 345688888877765 679999999887765422 2222234 9999 5666666654 367899
Q ss_pred EEEcCCCceeeeccCCCC-----CCceeeeeecCCCCeEEEeecc-cCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 218 AWNVDAKRVVCDLNTTDA-----FPSVLDLKCSPVEPIFVSAAAS-RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
+||..+++.+..+..... ......+.++|+++.++.+... . +.|.++|+.+++.+..+...+
T Consensus 113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~------------~~VsVID~~t~~vv~tI~v~g 180 (386)
T 3sjl_D 113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA------------PAVGVVDLEGKAFKRMLDVPD 180 (386)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS------------CEEEEEETTTTEEEEEEECCS
T ss_pred EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC------------CeEEEEECCCCcEEEEEECCC
Confidence 999999998887764321 1246789999999998887642 2 499999999999999887543
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCC----CCCeE-EEEEc-CCCCEEEEecCCCeEEEEec
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAH----DSAIS-SILFG-PDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~~~~~dg~i~iwd~ 364 (458)
. ...+....+.+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.+.+.|+
T Consensus 181 ~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~ 254 (386)
T 3sjl_D 181 C-----YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDL 254 (386)
T ss_dssp E-----EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEEC
T ss_pred c-----ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEEC
Confidence 1 223333455677778889988888876 5543221111 12222 24554 6776555 556899999999
Q ss_pred cCCCeeEEe-ecCCc--ccCCCCCCCceeEEEEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCCCCcE
Q 012699 365 QNQGQVLWT-RNCSR--FCDPESSKSCRHEMALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPHGAAI 431 (458)
Q Consensus 365 ~~~~~~~~~-~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h~~~v 431 (458)
.+....... ..... .............++++|+++.+++... .++|.++|+.+.+.+.++. -...+
T Consensus 255 ~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~ 333 (386)
T 3sjl_D 255 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEI 333 (386)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEE
T ss_pred CCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-CCCCc
Confidence 765321110 00000 0000011223345888999999988753 2579999999987655544 22478
Q ss_pred EEEEECCCCC-eEEE-ecCCCcEEEEeC
Q 012699 432 TTVDWHPTLP-MFLT-GSADHSVQVMSL 457 (458)
Q Consensus 432 ~~~~~~~~~~-~l~s-~~~dg~v~iw~l 457 (458)
.+++++||++ +|++ ...++.|.++|.
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 8999999997 5655 456899999986
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=4.7e-13 Score=118.66 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=161.1
Q ss_pred EEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCcccccc-----CCCceEEEEEecCCCeEEEEEcC--CC
Q 012699 152 CCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIY-----CGTEIMSLEWECKSDRLLLIGTA--DG 214 (458)
Q Consensus 152 ~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~--dg 214 (458)
.++++|||++++.+. .++.|.+||..+.+......... .......+.|+ +++++++++.. ++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~ 160 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAP 160 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCC
Confidence 499999999887765 36789999999887654322211 12345678999 67777777653 68
Q ss_pred cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEee--cCC
Q 012699 215 GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLP--LGE 291 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~--~~~ 291 (458)
.|.++|+.+++.+.++.... . ...+......+++.+.| |.+.+.++.+ ++...... +..
T Consensus 161 ~VsVID~~t~~vv~tI~v~g----~-~~~~P~g~~~~~~~~~D-------------G~~~~v~~~~~g~v~~~~~~~~~~ 222 (386)
T 3sjl_D 161 AVGVVDLEGKAFKRMLDVPD----C-YHIFPTAPDTFFMHCRD-------------GSLAKVAFGTEGTPEITHTEVFHP 222 (386)
T ss_dssp EEEEEETTTTEEEEEEECCS----E-EEEEEEETTEEEEEETT-------------SCEEEEECCSSSCCEEEECCCCSC
T ss_pred eEEEEECCCCcEEEEEECCC----c-ceeecCCCceeEEECCC-------------CCEEEEECCCCCeEEEeecceecc
Confidence 99999999999988886542 1 12222223344444444 4666677665 44322111 011
Q ss_pred CCCcE-EEEEEc-cCCCEEEEEecCCeEEEEeCCCCc--eeeeeeC----------CCCCeEEEEEcCCCCEEEEecC--
Q 012699 292 DPPAI-TSLCFN-HNGKILAASAVDGMIHMFDMSAGL--QITGWPA----------HDSAISSILFGPDETSIFSLGS-- 355 (458)
Q Consensus 292 ~~~~i-~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~-- 355 (458)
....+ ....|. ++|++++ .+.+|.|++.|+.+.. .+..+.. ..+....++++|+++.++....
T Consensus 223 ~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~ 301 (386)
T 3sjl_D 223 EDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQR 301 (386)
T ss_dssp TTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred ccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccc
Confidence 11112 224564 6776555 5668999999997653 2322220 1123345778999988887643
Q ss_pred --------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeC-CccEEEEEccCCCcccccC
Q 012699 356 --------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSG-SVRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 356 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~~i~i~~~~~~~~~~~~~ 425 (458)
.+.|.+.|+.+.+....... ...+..++++||++ +|+++.. ++.|.++|..+.+.+..+.
T Consensus 302 ~~~~hk~~~~~V~viD~~t~kv~~~i~v----------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 302 DEWRHKTASRFVVVLDAKTGERLAKFEM----------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEE----------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred cccccCCCCCEEEEEECCCCeEEEEEEC----------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 25799999998766543321 13478899999997 7777654 7999999999886544333
Q ss_pred CCCCcEEEEEECCC
Q 012699 426 PHGAAITTVDWHPT 439 (458)
Q Consensus 426 ~h~~~v~~~~~~~~ 439 (458)
..+..+.+.+++|
T Consensus 372 -~~~~p~~l~~s~d 384 (386)
T 3sjl_D 372 -QLGHGPQVITTAD 384 (386)
T ss_dssp -CCCSSCCEEEECC
T ss_pred -CCCCCceeEECCc
Confidence 2334445566655
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.59 E-value=2.3e-12 Score=117.70 Aligned_cols=250 Identities=8% Similarity=-0.010 Sum_probs=166.7
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.....++|+ ++++++++...++.|++||..++......... .... +++++++..++.+..+.. .
T Consensus 131 ~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---~~~~-ia~~~~g~~l~~~d~~~~-----------~ 194 (409)
T 3hrp_A 131 KYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---KGGK-PAVTKDKQRVYSIGWEGT-----------H 194 (409)
T ss_dssp CCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETC---CBCB-CEECTTSSEEEEEBSSTT-----------C
T ss_pred CCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccC---CCCc-eeEecCCCcEEEEecCCC-----------c
Confidence 357889999 67888888777899999999988766554432 2334 999999998887776431 2
Q ss_pred eEEEEECCCCceeEEe-ecCC-CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeee----eeCCCCCe--EEEEE
Q 012699 272 SLTVWNMKTWKAMTVL-PLGE-DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITG----WPAHDSAI--SSILF 343 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~----~~~~~~~v--~~~~~ 343 (458)
.|.+++...+.....+ .... ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~ 274 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIY 274 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEE
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEE
Confidence 7888888765543333 1111 334568899999655666677788999999987653322 22222222 39999
Q ss_pred cCC-CCEEEEecCCCeEEEEeccCCCeeEEeec-CCcccC---CCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccC
Q 012699 344 GPD-ETSIFSLGSDGKIIEWSLQNQGQVLWTRN-CSRFCD---PESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRG 417 (458)
Q Consensus 344 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~---~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~ 417 (458)
+|+ +.++++-..++.|+.|+............ ...... ....-..+..++++|+|+++++-. .+++|+.|++.+
T Consensus 275 ~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 275 YFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred eCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 995 66666667788999999764311111100 000000 001123478999999999777766 788999999655
Q ss_pred CCcccccCCC---------------CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 418 HASGMRTLPH---------------GAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 418 ~~~~~~~~~h---------------~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+. +..+.++ -..+..++++|++.++++-..++.|+.++++
T Consensus 355 G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 355 GY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp TE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 43 2222222 2468999999999888888889999988864
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.59 E-value=5e-12 Score=111.67 Aligned_cols=258 Identities=9% Similarity=0.051 Sum_probs=164.7
Q ss_pred cCCCCeEEEEeCCCCCEEEE-------EeCCCcEEEEecCCCCCCCcccc--ccCCCceEEEEEecCC-CeEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIAS-------ASVDGTVRIWTYDSSTPASRNAT--IYCGTEIMSLEWECKS-DRLLLIGTADG 214 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s-------~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~~l~~~~~dg 214 (458)
..-....+++|+++++++++ +..++.|.+||..+++....... ......+..++++ ++ ++++++.. .+
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~-~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLFVADM-RL 92 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEEC-SSSSEEEEEET-TT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEe-cCCCcEEEEEC-CC
Confidence 33445779999999988777 56788999999877654311100 0123568899998 55 66555554 44
Q ss_pred cEEEEEcCCCceeee-ccCC--CCCCceeeeeecCCCCeEEEeecccCCCCc--ceeeccceeEEEEECCCCceeEEeec
Q 012699 215 GIKAWNVDAKRVVCD-LNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSS--NIYSWGFASLTVWNMKTWKAMTVLPL 289 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~i~i~d~~~~~~~~~~~~ 289 (458)
.|.+||.+ ++.... .... .....+.++++.+++.++++...+...... .......+.|..+|.. ++......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 79999998 665433 2211 112357899999999887776543100000 0000111467777766 44433322
Q ss_pred CCCCCcEEEEEEc----cCCCEEEEE-ecCCeEEEEeCC-CCc-----eeeeeeCCC-CCeEEEEEcCCCCEEEEecCCC
Q 012699 290 GEDPPAITSLCFN----HNGKILAAS-AVDGMIHMFDMS-AGL-----QITGWPAHD-SAISSILFGPDETSIFSLGSDG 357 (458)
Q Consensus 290 ~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~v~d~~-~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg 357 (458)
.......++++ |+++.++++ ..++.|.+||+. +++ ....+..+. ..+..++++++|+++++...++
T Consensus 170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~ 247 (314)
T 1pjx_A 170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS 247 (314)
T ss_dssp --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence 12346889999 999766555 457899999986 343 223334443 5678999999998888877788
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCC
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGH 418 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~ 418 (458)
.|.+||..+++...... .....+.+++++|+|+.|++++ .++.|..|++...
T Consensus 248 ~i~~~d~~~g~~~~~~~---------~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQPKMRIR---------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBSCSEEEE---------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcEeEEEe---------CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 99999987443322111 1225688999999999666555 4678999998754
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.57 E-value=1.9e-13 Score=121.78 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=135.3
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----------eeEEeecCCCCCcEEEEEEccCC
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-----------AMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
.++..+++++...++++++.+ .+.+|+++..+ ..... ..+. |+.++| ++
T Consensus 38 ~~~nlLais~~~gll~a~~~~--------------~l~v~~~~~l~~~~~~~~~~~~~~~~~---~lp~-V~~l~f--d~ 97 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS--------------KAVVGELQLLRDHITSDSTPLTFKWEK---EIPD-VIFVCF--HG 97 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT--------------EEEEEEHHHHHHHHHSSSCCCCCSEEE---ECTT-EEEEEE--ET
T ss_pred ccccEEEEcCCCCEEEEeCCC--------------EEEEEEhhHhhhhhccccccccceEEe---eCCC-eeEEEE--CC
Confidence 468899999999999999987 78889876433 11222 2445 999999 89
Q ss_pred CEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 306 KILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
++|+++ .++.|++||+++.........|..++.++.+.+. .+++++.||.+.+||+.+..... .
T Consensus 98 ~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------------~ 161 (388)
T 1xip_A 98 DQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------------L 161 (388)
T ss_dssp TEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------------E
T ss_pred CEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------------c
Confidence 999998 8899999999887766667778888998887755 38889999999999998764321 2
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc--cccc---------CCCCCcEEEEEECCCCCeEEE
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS--GMRT---------LPHGAAITTVDWHPTLPMFLT 445 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~--~~~~---------~~h~~~v~~~~~~~~~~~l~s 445 (458)
...|.+++|||+| +++|..||.+++|+..+... ...+ .+|...|.++.|.+++.+|++
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 2368999999999 78899999999998877652 2222 147889999999999998876
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=4.9e-13 Score=132.41 Aligned_cols=250 Identities=13% Similarity=0.039 Sum_probs=159.8
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCC-----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc-----
Q 012699 146 HTSPISCCRFSSSGNNIASASVD-----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG----- 215 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----- 215 (458)
|...+..++|||||++||.++.+ .+|++||+.+++.... ......+..++|+ ++ +.|+.+..++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---~~~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---ELKWVKFSGLAWL-GN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---EEEEEESCCCEES-TT-SEEEEEECCCC-----
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---cCCCceeccEEEE-CC-CEEEEEEecCcccccc
Confidence 44468899999999999887644 4699999998875421 1111223578899 45 66666655543
Q ss_pred ---------EEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--c
Q 012699 216 ---------IKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW--K 282 (458)
Q Consensus 216 ---------i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~--~ 282 (458)
|++|++.++.. ...+....+...+..+.|+|+|+.++....+... ....|.+||+.++ +
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~--------~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD--------PVNTVHVARVTNGKIG 307 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC--------SCCEEEEEEEETTEEC
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC--------CcceEEEEECCCCCCc
Confidence 88999987652 2223333322357889999999988877654210 1148999999876 3
Q ss_pred eeEEeecCCCCCcEEEEEEccCCCEEEEEecC----CeEEEEeCCCC--ceeeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 283 AMTVLPLGEDPPAITSLCFNHNGKILAASAVD----GMIHMFDMSAG--LQITGWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
....+.. +....... ++|+|+.|+..+.+ +.|.+||+.++ +....+..+...+..+.++ ++.++++...|
T Consensus 308 ~~~~l~~--~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 308 PVTALIP--DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp CCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred ccEEecC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 1333332 22233444 34889888887753 45999999874 3344444555567778887 55677888889
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC----CccEEEEEccCCC
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG----SVRAPIYQVRGHA 419 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~~i~i~~~~~~~ 419 (458)
+..++|.+...+..... +. ......+..++++|+++.|+.... .+++++||+.+++
T Consensus 384 g~~~l~~~~~~g~~~~~-----l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 384 AKSQVLAFDLDGKPAGA-----VS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp TEEEEEEEETTSCEEEE-----CB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CEEEEEEEeCCCCceee-----cc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 98888766522221111 10 112456888999999987664433 3789999997754
No 211
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=1.4e-11 Score=112.50 Aligned_cols=248 Identities=8% Similarity=-0.028 Sum_probs=160.0
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCc
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKR 225 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~ 225 (458)
.....|+|+|+++++++...++.|++||..++..... ........ ++|+ ++++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---~~~~~~~~-ia~~-~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---HPGFKGGK-PAVT-KDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---EETCCBCB-CEEC-TTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---eccCCCCc-eeEe-cCCCcEEEEecCCCceEEEEEcCCCc
Confidence 4578999999999888877789999999987654321 11223334 8898 6677788877765 78899887665
Q ss_pred eeeecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--cCCCCCc--EEEE
Q 012699 226 VVCDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP--LGEDPPA--ITSL 299 (458)
Q Consensus 226 ~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~--~~~~~~~--i~~~ 299 (458)
....+. .......+.+++++|++..++.+..+ +.|..||..++....... ..+.... ...+
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~-------------~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN-------------KNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTT-------------CEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECC-------------CcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 433330 01122467889999955555544443 589999998765432211 1111111 1389
Q ss_pred EEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCC---------------CCeEEEEEcCCCCEEEEec-CCCeEEEE
Q 012699 300 CFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHD---------------SAISSILFGPDETSIFSLG-SDGKIIEW 362 (458)
Q Consensus 300 ~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~dg~i~iw 362 (458)
+|+|+ +.++++-..++.|+.|+.... +..+.++. .....++++|+|+++++-+ .++.|+.|
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 99995 555555556789999997643 33333322 3478999999999888877 88999999
Q ss_pred eccCCCeeEEeecCCcc--c---CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 363 SLQNQGQVLWTRNCSRF--C---DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~--~---~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
++.++............ . .....-..+..++++|+|.++++-..+++|+.+++
T Consensus 351 ~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 97655322211110000 0 00111245889999999888887778888888765
No 212
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=4.5e-13 Score=119.84 Aligned_cols=275 Identities=9% Similarity=0.056 Sum_probs=165.3
Q ss_pred CCeEEEEeCCCCCEEEEEe--CCCcEEEEecCCCCCCCc----cccccCCCceEEEEEecCCCeEEEEEcC-----CCcE
Q 012699 148 SPISCCRFSSSGNNIASAS--VDGTVRIWTYDSSTPASR----NATIYCGTEIMSLEWECKSDRLLLIGTA-----DGGI 216 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i 216 (458)
..+..++++|+|+.+++.. .++.++||.+.+++.... .....+-..+..++++ ++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEc-CCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 234356666653322100 0011123578999998 56776665443 5789
Q ss_pred EEEEcCCCceeeeccCCC----CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 217 KAWNVDAKRVVCDLNTTD----AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
.+||+.+++.+..+.... ....+..+++++++..++.+.... ...+.|.+||+.+++....+. .|
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~---------~~~~~i~v~d~~~g~~~r~~~--~~ 164 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP---------DDKAALIRVDLQTGLAARVLQ--GY 164 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS---------GGGCEEEEEETTTCCEEEECT--TC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc---------CCCCeEEEEECCCCCEEEEec--CC
Confidence 999999998766654321 113467899998655444333200 011599999999887665542 22
Q ss_pred CCcE-EEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC-eEEEEeccC--CC
Q 012699 293 PPAI-TSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG-KIIEWSLQN--QG 368 (458)
Q Consensus 293 ~~~i-~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~--~~ 368 (458)
.... ....+.++|..+.+.+.+|.+..|. ..+..|+|+|+++.|+.+..++ .+..++... ..
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNL 230 (343)
T ss_dssp TTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCT
T ss_pred CcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCC
Confidence 1100 0134455676677677777765442 2367899999999888887665 444444321 00
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEEEe
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~ 446 (458)
... ...................++++++|.++++...++.|.+|+..+++ ...+. .+...+.+++|.++++++++.
T Consensus 231 ~~~-~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 231 QLT-DAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TCC-HHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCC-hhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC-EEEEEECCceecCCeeEECCCCcEEEEe
Confidence 000 00000000000112245679999999999888889999999983332 12222 234568999999999888777
Q ss_pred cCCC
Q 012699 447 SADH 450 (458)
Q Consensus 447 ~~dg 450 (458)
+..+
T Consensus 309 ~~~~ 312 (343)
T 2qe8_A 309 NQLH 312 (343)
T ss_dssp CCGG
T ss_pred Cccc
Confidence 6443
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=2.4e-11 Score=107.72 Aligned_cols=227 Identities=14% Similarity=0.046 Sum_probs=150.1
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
.....|+|.++.++++...++.|..||..+++... +... ..+.++.+.+++.++++. .+ .|
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~---~~v~~i~~~~dg~l~v~~-~~--------------gl 111 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALP---FMGSALAKISDSKQLIAS-DD--------------GL 111 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS---SCEEEEEEEETTEEEEEE-TT--------------EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EECC---CcceEEEEeCCCeEEEEE-CC--------------CE
Confidence 35678996667888888888999999998876532 2222 468899999999877764 22 69
Q ss_pred EEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEec------CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcC
Q 012699 274 TVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV------DGMIHMFDMSAGLQITGWPAHDSAISSILFGP 345 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 345 (458)
.+||..+++......... ....++.++++|+|+++++... .+.|+.++ +++.. .+..+......++|+|
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSP 188 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECT
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcC
Confidence 999998877654332211 1235889999999987665432 25666666 44433 3333334578999999
Q ss_pred CCCEEEEe-cCCCeEEEEecc--CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccc
Q 012699 346 DETSIFSL-GSDGKIIEWSLQ--NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGM 422 (458)
Q Consensus 346 ~~~~l~~~-~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~ 422 (458)
+++.|+.+ +.++.|.+|++. ++...... ..+.........+..++++++|+++++...++.|..|+.. ++...
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~---~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~ 264 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKA---EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIA 264 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCC---EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEE
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCc---eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEE
Confidence 99876544 557899999986 33011000 0000011123456789999999988777777889999984 33333
Q ss_pred ccCCCCCcEEEEEEC-CCCCeEEEe
Q 012699 423 RTLPHGAAITTVDWH-PTLPMFLTG 446 (458)
Q Consensus 423 ~~~~h~~~v~~~~~~-~~~~~l~s~ 446 (458)
.+..+...+++++|+ |+++.|+.+
T Consensus 265 ~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp EEECSCSBEEEEEEESTTSCEEEEE
T ss_pred EEECCCCCcEEEEEecCCCCEEEEE
Confidence 444455679999998 888755433
No 214
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.51 E-value=1.2e-11 Score=110.17 Aligned_cols=237 Identities=11% Similarity=0.163 Sum_probs=156.0
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCC----ceeeeccC-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAK----RVVCDLNT-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
....+++.+..++.|.++|+.+. +...+++. .........+.+.|++ ++++...+. .+.+.|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-------~g~~~g~ 165 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-------EGEGPGG 165 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------TSCSCCE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------CCCCCCe
Confidence 44556666777899999999765 55555520 0011245668899999 666655542 2233479
Q ss_pred EEEEECCCCceeEEeecCCCCC-cEEEEEEccCCCEEEEEe-------------------cCCeEEEEeCCCCceeeeee
Q 012699 273 LTVWNMKTWKAMTVLPLGEDPP-AITSLCFNHNGKILAASA-------------------VDGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~-------------------~dg~i~v~d~~~~~~~~~~~ 332 (458)
+.++|.++.+.+..+.....+. .-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999999998886543332 234578899999888874 36799999999988888877
Q ss_pred CCC--CCeEEEEE--cCCCCEEEEec------CCCeEEEEeccCCCeeEEeec--CCc--ccC-C-------CCCCCcee
Q 012699 333 AHD--SAISSILF--GPDETSIFSLG------SDGKIIEWSLQNQGQVLWTRN--CSR--FCD-P-------ESSKSCRH 390 (458)
Q Consensus 333 ~~~--~~v~~~~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~--~~~--~~~-~-------~~~~~~v~ 390 (458)
... .....+.| +|+++++++++ .+++|.+|.... +....... ... ... . ......+.
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 531 23455655 99999887766 466888877764 22111110 000 000 0 00024578
Q ss_pred EEEEccCCCEEEEEeC-CccEEEEEccCCCccc---ccC-C-------C------CCcEEEEEECCCCCeEEEec
Q 012699 391 EMALDVNGRRLLVTSG-SVRAPIYQVRGHASGM---RTL-P-------H------GAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 391 ~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~---~~~-~-------h------~~~v~~~~~~~~~~~l~s~~ 447 (458)
.+.+||||++|+++.. .+.|.+||+....... .+. + | ......++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999999886 5899999986332111 111 1 1 01468899999999888877
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.48 E-value=1.3e-11 Score=108.34 Aligned_cols=233 Identities=11% Similarity=0.089 Sum_probs=150.6
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.......|+|....++++...++.|..|+.. ++. ..+.... ..+..++++++++++++.... +
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~--~~~~gl~~d~dG~l~v~~~~~-------------~ 107 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT--AFTNGNAVDAQQRLVHCEHGR-------------R 107 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC--SCEEEEEECTTSCEEEEETTT-------------T
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC--CccceeeECCCCCEEEEECCC-------------C
Confidence 3456788995555578888889999999984 443 2232222 468899999999977665443 3
Q ss_pred eEEEEECCCCceeEEeec-CC-CCCcEEEEEEccCCCEEEE----Eec-------------CCeEEEEeCCCCceeeeee
Q 012699 272 SLTVWNMKTWKAMTVLPL-GE-DPPAITSLCFNHNGKILAA----SAV-------------DGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~----~~~-------------dg~i~v~d~~~~~~~~~~~ 332 (458)
.|..|+.. ++....... .. ....++.++++|+|++.++ |.. .+.|+.||..+++.....
T Consensus 108 ~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~- 185 (305)
T 3dr2_A 108 AITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA- 185 (305)
T ss_dssp EEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred EEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence 88899876 443322211 11 1134677999999998776 332 256888888766654332
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCC------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 333 AHDSAISSILFGPDETSIFSLGSD------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
.......++|+|+++.|+.+... +.|.+|++.... ...... +.. .....+..++++++|++.+ ++.
T Consensus 186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~---~~~--~~~~~pdgi~~d~~G~lwv-~~~ 257 (305)
T 3dr2_A 186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH---FAS--VPDGLPDGFCVDRGGWLWS-SSG 257 (305)
T ss_dssp -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE---EEC--CSSSCCCSEEECTTSCEEE-CCS
T ss_pred -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE---EEE--CCCCCCCeEEECCCCCEEE-ecC
Confidence 34567889999999988777654 789999987643 111110 000 0123356789999999554 444
Q ss_pred CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
+ .|.+|+..+. ....+..+. .+.+++|+|+++.|..++.++..++
T Consensus 258 ~-gv~~~~~~g~-~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 258 T-GVCVFDSDGQ-LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp S-EEEEECTTSC-EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred C-cEEEECCCCC-EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4 4999998543 333333233 5889999999987877776654443
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.48 E-value=1.4e-10 Score=101.38 Aligned_cols=240 Identities=10% Similarity=0.051 Sum_probs=154.0
Q ss_pred cCCCCeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC
Q 012699 145 GHTSPISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA 223 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 223 (458)
.+..---+..|+|++ .++++...++.|..||..++... .......+.+++++ ++++++++ . ++.|.+||.++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RVTMDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EEeCCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCC
Confidence 344456688999964 45666677899999998876532 23345678999999 56665544 3 56799999988
Q ss_pred CceeeeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE
Q 012699 224 KRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF 301 (458)
Q Consensus 224 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~ 301 (458)
++........ .....+.+++++|++.++++....... ........+.|..++.. ++...... .....+.++|
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~--~~~~~~~~~~l~~~d~~-g~~~~~~~---~~~~pngi~~ 156 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA--PAVLERHQGALYSLFPD-HHVKKYFD---QVDISNGLDW 156 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB--TTBCCTTCEEEEEECTT-SCEEEEEE---EESBEEEEEE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc--cccccCCCcEEEEEECC-CCEEEEee---ccccccceEE
Confidence 7754332221 122457889999999977755432110 00000111355555543 33322221 2234688999
Q ss_pred ccCCCEEEE-EecCCeEEEEeC--CCCce-----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 302 NHNGKILAA-SAVDGMIHMFDM--SAGLQ-----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 302 ~~~~~~l~~-~~~dg~i~v~d~--~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
+|+++.|++ .+.++.|.+||+ .++.. ...+..+......+++.++|++.++....+.|..||..+++.....
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 999987755 455789999987 44432 2223333456789999999988777777888999999865543322
Q ss_pred ecCCcccCCCCCCCceeEEEEc-cCCCEEEEEeC
Q 012699 374 RNCSRFCDPESSKSCRHEMALD-VNGRRLLVTSG 406 (458)
Q Consensus 374 ~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~ 406 (458)
. .....+++++|. |+++.|++++.
T Consensus 237 ~---------~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 K---------LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp E---------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred E---------CCCCCceEEEEeCCCCCEEEEEcC
Confidence 1 122458999998 89888877665
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.48 E-value=5.5e-12 Score=123.73 Aligned_cols=251 Identities=13% Similarity=0.109 Sum_probs=157.2
Q ss_pred CceEEEEEecCCCeEEEE-EcC----CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCccee
Q 012699 192 TEIMSLEWECKSDRLLLI-GTA----DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIY 266 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~-~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (458)
..+..++|+ +++++|+. .+. ...|++||+.+++.+.... .. .....++|+ |++.|+.+..+...+.....
T Consensus 129 ~~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 129 TALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp CEEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EE--EESCCCEEE-TTTEEEEEESSCCC------
T ss_pred EEEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CC--ceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 467888999 56666663 322 2479999999998654311 10 113578999 99988888766321111111
Q ss_pred eccceeEEEEECCCCce--eEEeecCC-CCCcEEEEEEccCCCEEEEEec----CCeEEEEeCCCCc-eeeeeeCCCCCe
Q 012699 267 SWGFASLTVWNMKTWKA--MTVLPLGE-DPPAITSLCFNHNGKILAASAV----DGMIHMFDMSAGL-QITGWPAHDSAI 338 (458)
Q Consensus 267 ~~~~g~i~i~d~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----dg~i~v~d~~~~~-~~~~~~~~~~~v 338 (458)
......|++|++.+... ...+.... +......+.|+|||++|+.... +..|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 11224799999987654 33333333 3445788999999998866543 2489999998763 455566666666
Q ss_pred EEEEEcCCCCEEEEecC-C---CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc---cEE
Q 012699 339 SSILFGPDETSIFSLGS-D---GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV---RAP 411 (458)
Q Consensus 339 ~~~~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~---~i~ 411 (458)
... +++++..|+..+. + +.|..+|+.+.....+. .+ ..+...+. .|+++++.|+....++ .|+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~----~l---~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR----DL---IPERQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE----EE---ECCCSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE----EE---ecCCCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 555 6666666554443 3 67999999875431110 01 11222233 8999999888776543 689
Q ss_pred EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC----CcEEEEeC
Q 012699 412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD----HSVQVMSL 457 (458)
Q Consensus 412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d----g~v~iw~l 457 (458)
+|++.+........+....+..+.++|+++.|+....+ +.|..||+
T Consensus 354 ~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 354 QFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp EECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence 99988653322223455678888999998866654433 78888876
No 218
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=1.2e-12 Score=116.52 Aligned_cols=174 Identities=11% Similarity=0.104 Sum_probs=128.7
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC--------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSST--------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
+++.+++++...++++|+.++ +++|++.... ............ |..++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6669865332 011112334455 999999 67788888 889999999
Q ss_pred cCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEE
Q 012699 221 VDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLC 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~ 300 (458)
+.+........... ..+.++.+.+.. ++++..+ |.+.+||++++..... ...|+|++
T Consensus 113 v~sl~~~~~~~~~~--~~v~~i~~~~p~--~av~~~d-------------G~L~v~dl~~~~~~~~------~~~Vs~v~ 169 (388)
T 1xip_A 113 LEELSEFRTVTSFE--KPVFQLKNVNNT--LVILNSV-------------NDLSALDLRTKSTKQL------AQNVTSFD 169 (388)
T ss_dssp SSSTTCEEEEEECS--SCEEEEEECSSE--EEEEETT-------------SEEEEEETTTCCEEEE------EESEEEEE
T ss_pred chhhhccCccceee--cceeeEEecCCC--EEEEECC-------------CCEEEEEccCCccccc------cCCceEEE
Confidence 98766544443333 456676665543 6666666 6999999998776542 23599999
Q ss_pred EccCCCEEEEEecCCeEEEEeCCCCce--eeee------e---CCCCCeEEEEEcCCCCEEEEe
Q 012699 301 FNHNGKILAASAVDGMIHMFDMSAGLQ--ITGW------P---AHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 301 ~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~~~ 353 (458)
|+|+| ++.|..||.+++|+...++. ..++ . +|...|.+|.|.+++.++++-
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 99999 67899999999999877664 4555 2 477899999999999888763
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.46 E-value=1.3e-10 Score=102.06 Aligned_cols=244 Identities=13% Similarity=0.062 Sum_probs=152.7
Q ss_pred eeccCCCCeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 142 TFLGHTSPISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 142 ~~~~h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
.+..+........|+|+++ ++++...++.|..|+.. ++.. ........+..++++ ++++++++...++.|..|+
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---VLLDATAFTNGNAVD-AQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---EEEESCSCEEEEEEC-TTSCEEEEETTTTEEEEEC
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---EEeCCCCccceeeEC-CCCCEEEEECCCCEEEEEC
Confidence 3344555677899999998 56777788999999873 3321 222345568899999 6677666666668899999
Q ss_pred cCCCceeeeccCC--CCCCceeeeeecCCCCeEEEe----ecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 221 VDAKRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSA----AASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
.+ ++........ .....+.++++.+++.++++- ......+.........+.|..+|..+++..... ...
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----~~~ 188 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----DLD 188 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----EES
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----cCC
Confidence 86 5432221111 111346789999999988862 211100000000111257888888766654432 123
Q ss_pred cEEEEEEccCCCEEEEEecC------CeEEEEeCCCCce--eeee-eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEecc
Q 012699 295 AITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQ--ITGW-PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 365 (458)
..+.++|+|+++.|+++... +.|++|++..+.. ...+ .........+++.++|++ .+++.+ .|.+|+..
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDSD 266 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECTT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECCC
Confidence 46889999999988877665 6899999875431 1111 112344567899999984 444444 49999984
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV 408 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~ 408 (458)
. +..... .. ...+..++|+|+++.|++++.++
T Consensus 267 g-~~~~~~-~~---------~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 267 G-QLLGHI-PT---------PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp S-CEEEEE-EC---------SSCCCEEEECTTSCEEEEEETTE
T ss_pred C-CEEEEE-EC---------CCceeEEEEeCCCCEEEEEcCCe
Confidence 3 322211 11 11378899999999998888765
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.7e-11 Score=110.71 Aligned_cols=252 Identities=14% Similarity=0.093 Sum_probs=161.0
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccc-c----CCCceEEEEEecCCC
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATI-Y----CGTEIMSLEWECKSD 204 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~-~----~~~~v~~~~~~~~~~ 204 (458)
+.++..-..+ .++++||+++|+.+. .++.|.++|..+.+........ . .......+.|+ +++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~s-pDG 188 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALT-PDN 188 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEEC-TTS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEc-CCC
Confidence 3334333345 799999999888775 3678999999988765432221 0 12335678888 677
Q ss_pred eEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCC-CeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 205 RLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVE-PIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 205 ~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
++++++.. ++.|.+.|+.+++.+..+.... . ....|++ ..+++.+.+ |.+.+.+..++
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~--~~~~p~g~~~~v~~~~d-------------G~~~~V~~~~~ 249 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----C--YHIFPASPTVFYMNCRD-------------GSLARVDFADG 249 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E--EEEEEEETTEEEEEETT-------------SSEEEEECCTT
T ss_pred CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----c--eeeccCCCcEEEEEcCC-------------CCEEEEECCCC
Confidence 77777654 5789999999999988776532 1 1223332 233333333 46666666444
Q ss_pred ceeEE----eecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCcee--eeeeC----------CCCCeEEEEEcC
Q 012699 282 KAMTV----LPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQI--TGWPA----------HDSAISSILFGP 345 (458)
Q Consensus 282 ~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~~----------~~~~v~~~~~~~ 345 (458)
+.... +.....+ ....+.+.+++..++..+..+.+.+.|+...... ..+.. .......++++|
T Consensus 250 ~v~~~~~~~~~v~~~p-~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~ 328 (426)
T 3c75_H 250 ETKVTNTEVFHTEDEL-LINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR 328 (426)
T ss_dssp CCEEEECCCCSCTTSC-BCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG
T ss_pred cEEEEeeeeeccCCCc-eeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC
Confidence 43321 2111111 1123567899888877788899999998654321 11110 011122368999
Q ss_pred CCCEEEEecC----------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEe-CCccEEEE
Q 012699 346 DETSIFSLGS----------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTS-GSVRAPIY 413 (458)
Q Consensus 346 ~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~-~~~~i~i~ 413 (458)
+++.+++... ++.|.+.|..+.+....... ......++|+|||+ +++++. .++.|.++
T Consensus 329 dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------g~~P~gia~spDg~~~lyv~n~~s~~VsVI 398 (426)
T 3c75_H 329 QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------GHEIDSINVSQDAEPLLYALSAGTQTLHIY 398 (426)
T ss_dssp GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------EEEECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred CCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------CCCcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence 9887776532 45799999998766543321 12478899999999 888888 48999999
Q ss_pred EccCCCccccc
Q 012699 414 QVRGHASGMRT 424 (458)
Q Consensus 414 ~~~~~~~~~~~ 424 (458)
|+.+.+.+..+
T Consensus 399 D~~t~kvv~tI 409 (426)
T 3c75_H 399 DAATGEELRSV 409 (426)
T ss_dssp ETTTCCEEEEE
T ss_pred ECCCCCEEEEe
Confidence 99998766554
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=1.5e-11 Score=120.57 Aligned_cols=247 Identities=11% Similarity=0.074 Sum_probs=155.7
Q ss_pred cCCCCeEEEEeCCCCCEEEEE-----eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCC-----
Q 012699 145 GHTSPISCCRFSSSGNNIASA-----SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADG----- 214 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----- 214 (458)
+|...+..++|||||++||.+ +...+|++||+.+++.... . ........++|+ +++.|+.+..+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--P-LKDVKFSGISWL--GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--E-EEEEESCCCEEE--TTTEEEEEESSCCC---
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--c-cCCceeccEEEe--CCCEEEEEEecCccccc
Confidence 455678889999999998743 3335799999998875321 1 111113567898 455555555553
Q ss_pred --------cEEEEEcCCCce--eeeccCCC-CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-
Q 012699 215 --------GIKAWNVDAKRV--VCDLNTTD-AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK- 282 (458)
Q Consensus 215 --------~i~~wd~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~- 282 (458)
.|++|++.++.. ...+.... +......+.++|+++.++....... ....|.++|+.++.
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---------~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST---------SGNRLYVKDLSQENA 271 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS---------SCCEEEEEETTSTTC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC---------CCcEEEEEECCCCCC
Confidence 499999987653 22222222 2234678999999998866544221 11389999998763
Q ss_pred eeEEeecCCCCCcEEEEEEccCCCEEEEEec-C---CeEEEEeCCCCce--eeeeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 283 AMTVLPLGEDPPAITSLCFNHNGKILAASAV-D---GMIHMFDMSAGLQ--ITGWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d---g~i~v~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
....+.. +....... ++++|..|+..+. + +.|..+|+.++.. ...+..|...+. .|++++++|+....+
T Consensus 272 ~~~~l~~--~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 272 PLLTVQG--DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp CCEEEEC--SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred ceEEEeC--CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 3333332 22333343 6666666654443 3 6799999987654 345566666665 899999888776654
Q ss_pred C---eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC----ccEEEEEccCCC
Q 012699 357 G---KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS----VRAPIYQVRGHA 419 (458)
Q Consensus 357 g---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~----~~i~i~~~~~~~ 419 (458)
+ .|++|++... ..... . ......+..+.++|+++.|+....+ ++++.||+.+++
T Consensus 347 ~g~~~l~~~d~~g~-~~~~l-~-------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 347 DATARVEQFDYEGK-RVREV-A-------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp TTEEEEEEECTTSC-EEEEE-C-------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred CCeeEEEEEECCCC-eeEEe-e-------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 4 6889988743 22111 0 1123456778888998877766554 789999987653
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.43 E-value=1.4e-10 Score=103.42 Aligned_cols=247 Identities=13% Similarity=0.146 Sum_probs=152.5
Q ss_pred CCCCEEEE-EeCCCcEEEEecCCCCCCCc-cccc-------cCC-CceEEEEEecCCCeEEEEEcCC------CcEEEEE
Q 012699 157 SSGNNIAS-ASVDGTVRIWTYDSSTPASR-NATI-------YCG-TEIMSLEWECKSDRLLLIGTAD------GGIKAWN 220 (458)
Q Consensus 157 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~-~~~~-------~~~-~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd 220 (458)
+++++|+. +..+++|.++|+.+...... ...+ ..+ .....+... +++ +++++..+ |.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 77777654 56788999999875422111 1111 111 234455666 556 66666555 7899999
Q ss_pred cCCCceeeeccCCCCC-CceeeeeecCCCCeEEEeeccc----CCC--CcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 221 VDAKRVVCDLNTTDAF-PSVLDLKCSPVEPIFVSAAASR----RYG--SSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
.++++.+.++...... ...+.+-|+|+++.+++..... ..+ ...+.+.....|.+||+.+++....+......
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999999888754322 2345688899999888875110 000 00000011259999999998888888764322
Q ss_pred CcEEEEEE--ccCCCEEEEEec------CCeEEEEeCCCCce--eeee--eCC----------------CCCeEEEEEcC
Q 012699 294 PAITSLCF--NHNGKILAASAV------DGMIHMFDMSAGLQ--ITGW--PAH----------------DSAISSILFGP 345 (458)
Q Consensus 294 ~~i~~~~~--~~~~~~l~~~~~------dg~i~v~d~~~~~~--~~~~--~~~----------------~~~v~~~~~~~ 345 (458)
.....+.| +|+++++++++. +++|.+|....++. ...+ ... ......|.++|
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~ 330 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL 330 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence 34556666 999999888774 56887766554321 1111 100 23467899999
Q ss_pred CCCEEEEecC-CCeEEEEeccCCCeeEEee--cCC-cc---c--CCCCCCCceeEEEEccCCCEEEEEe
Q 012699 346 DETSIFSLGS-DGKIIEWSLQNQGQVLWTR--NCS-RF---C--DPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 346 ~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~--~~~-~~---~--~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
||++|+++.. .+.|.+||+.......... ... .+ . ...........++++|||++|+++.
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999887665 7899999997443222111 110 00 0 0011123468899999999999998
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.43 E-value=5.3e-10 Score=99.00 Aligned_cols=230 Identities=11% Similarity=0.054 Sum_probs=147.8
Q ss_pred CeEEEEeCCCC-CEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 149 PISCCRFSSSG-NNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 149 ~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
-..+..|+|++ .++++...++.|..||..+++.. .......+.+++|+ ++++++++. .+ .|.+||..+++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~~~~~~v~~i~~~-~dg~l~v~~-~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VHALPFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EEECSSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EEECCCcceEEEEe-CCCeEEEEE-CC-CEEEEECCCCcEE
Confidence 35678999975 45666667889999998776432 12234578999999 567766654 44 4999999888754
Q ss_pred eeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCC
Q 012699 228 CDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNG 305 (458)
Q Consensus 228 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (458)
...... .....+.++.++|++.++++...... ....+.|..++ +++...... .......++|+|++
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-------~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA-------ETGAGSIYHVA--KGKVTKLFA---DISIPNSICFSPDG 190 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC-------CTTCEEEEEEE--TTEEEEEEE---EESSEEEEEECTTS
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC-------CCCceEEEEEe--CCcEEEeeC---CCcccCCeEEcCCC
Confidence 332221 11235889999999997765542210 00114666666 444333221 12346789999999
Q ss_pred CEEEEE-ecCCeEEEEeCC--CC-ce-----eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecC
Q 012699 306 KILAAS-AVDGMIHMFDMS--AG-LQ-----ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC 376 (458)
Q Consensus 306 ~~l~~~-~~dg~i~v~d~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 376 (458)
+.++.+ +.++.|.+||+. ++ +. ...+.........+++.++|.+.++...++.|..||.. ++..... .
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i-~- 267 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARY-E- 267 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEE-E-
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEE-E-
Confidence 877655 456899999986 55 32 22223334567889999999877776667889999984 3322211 1
Q ss_pred CcccCCCCCCCceeEEEEc-cCCCEEEEEeCC
Q 012699 377 SRFCDPESSKSCRHEMALD-VNGRRLLVTSGS 407 (458)
Q Consensus 377 ~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~~ 407 (458)
.....+.+++|+ |+++.|++++..
T Consensus 268 -------~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 268 -------VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -------CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -------CCCCCcEEEEEecCCCCEEEEEecC
Confidence 123458999998 898877766543
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.40 E-value=3.1e-11 Score=107.84 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=151.3
Q ss_pred CceEEEEEecCCCeEEEEEc--CCCcEEEEEcCCCceeeecc-----CCCCCCceeeeeecCCCCeEEEeecccCCCCcc
Q 012699 192 TEIMSLEWECKSDRLLLIGT--ADGGIKAWNVDAKRVVCDLN-----TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSN 264 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (458)
..+..++++ ++++++++.. .++.+++|.+.+++.. .+. ...+...+..+++++++.++++.....
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~------ 88 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ------ 88 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH------
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC------
Confidence 467889998 6777777753 2343555555455432 221 112335789999999988766543310
Q ss_pred eeeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEEccCCCEEE-EEe---cCCeEEEEeCCCCceeeeeeCCCC
Q 012699 265 IYSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCFNHNGKILA-ASA---VDGMIHMFDMSAGLQITGWPAHDS 336 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~-~~~---~dg~i~v~d~~~~~~~~~~~~~~~ 336 (458)
....+.|.+||+.+++....+.+.. +...+..++++|++..++ +.. .++.|.+||+.+++..+.+..|..
T Consensus 89 --~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 89 --SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp --HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred --cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 0001489999999988777776532 123468899998655554 444 578999999998887666655432
Q ss_pred CeE-EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-cEEEEE
Q 012699 337 AIS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-RAPIYQ 414 (458)
Q Consensus 337 ~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-~i~i~~ 414 (458)
... ...+.++|..+.+.+.++.++.|.. .+..++|+|+|+.|+++...+ .++.++
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-----------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHL-----------------------GVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp TSCCSCCCEETTEECBEECTTSCEECCCC-----------------------CEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred ccccccceeECCEEEEeccCCCceeceec-----------------------ccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 111 1345557777777777877765532 257799999999999887765 555555
Q ss_pred ccCCC--c-----c---cccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 415 VRGHA--S-----G---MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 415 ~~~~~--~-----~---~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..... . . ....++......++++++|.++++...++.|.+|+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred HHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 32110 0 0 011234456778999999999999888999999986
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=3.2e-10 Score=110.49 Aligned_cols=288 Identities=10% Similarity=0.055 Sum_probs=177.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccCC--------Cc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYCG--------TE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
+..|+.++.++.|.-+|..+++.+......... .. ...+... +..+++++.|+.|..+|.++|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEeee
Confidence 456777778888999998888764322111000 00 0112222 45688888999999999999998877
Q ss_pred ccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC-C------------
Q 012699 230 LNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED-P------------ 293 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~-~------------ 293 (458)
.....+......+...| ++.. +.+...... ..+|.|..||.++++.+..+..... +
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v-~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~ 218 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKV-VIGNGGAEF-------GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIA 218 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEE-EECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHH
T ss_pred ecCcCCCCCCccccCCcEEECCEE-EEEeCCCcc-------CCCCEEEEEECCCCcEEEEecccCCCccccccccccccc
Confidence 66531111111112222 3333 333221000 0236999999999999887753211 0
Q ss_pred ----------------CcEEEEEEccCCCEEEEEecCCe-------------------EEEEeCCCCceeeeeeC--CC-
Q 012699 294 ----------------PAITSLCFNHNGKILAASAVDGM-------------------IHMFDMSAGLQITGWPA--HD- 335 (458)
Q Consensus 294 ----------------~~i~~~~~~~~~~~l~~~~~dg~-------------------i~v~d~~~~~~~~~~~~--~~- 335 (458)
.....++++|++.++++++.++. |..+|.++++.+..++. |.
T Consensus 219 ~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~ 298 (689)
T 1yiq_A 219 AKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDA 298 (689)
T ss_dssp HTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCC
T ss_pred ccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccc
Confidence 01125788998889999988764 99999999999887764 21
Q ss_pred ------CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCc----------------------ccC---
Q 012699 336 ------SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSR----------------------FCD--- 381 (458)
Q Consensus 336 ------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------------~~~--- 381 (458)
.+........+|+ .++.++.+|.++++|..+++.+........ ...
T Consensus 299 wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~ 378 (689)
T 1yiq_A 299 WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKR 378 (689)
T ss_dssp SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSC
T ss_pred ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCe
Confidence 1222222223564 788999999999999998766532211100 000
Q ss_pred ----CCC-CCCceeEEEEccCCCEEEEEeC---------------------------------------------CccEE
Q 012699 382 ----PES-SKSCRHEMALDVNGRRLLVTSG---------------------------------------------SVRAP 411 (458)
Q Consensus 382 ----~~~-~~~~v~~~~~s~~g~~l~~~~~---------------------------------------------~~~i~ 411 (458)
+.. ....-..++++|+..++++... +|.++
T Consensus 379 ~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~ 458 (689)
T 1yiq_A 379 NLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLI 458 (689)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEE
T ss_pred eEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEE
Confidence 000 0001123789999888887632 37799
Q ss_pred EEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 412 IYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 412 i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.||+.+++...+...+ .++..-.+...+.+++.++.||.|+.||..
T Consensus 459 A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 459 AWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp EEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred EEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECC
Confidence 9999988766555432 333334566678889999999999999963
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.37 E-value=2.8e-10 Score=110.88 Aligned_cols=269 Identities=13% Similarity=0.171 Sum_probs=166.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccc-cCC--CceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATI-YCG--TEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~--~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~ 228 (458)
+..|+.++.|+.|..+|..+++........ ... ..+.+ ... .++. +++++ .+|.|..||.++|+.+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v--~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV--VNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE--ETTE-EEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE--ECCE-EEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 457888888999999999988765432221 100 11110 011 1344 44443 36899999999999887
Q ss_pred eccCCCCC-----------------------------CceeeeeecCCCCeEEEeecccCC----------CCcceeecc
Q 012699 229 DLNTTDAF-----------------------------PSVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSWG 269 (458)
Q Consensus 229 ~~~~~~~~-----------------------------~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 269 (458)
.+...... ..-..+++.|+...++.+..+... +.....
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~--- 274 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFL--- 274 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTT---
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceee---
Confidence 66531100 001246778877777777655310 000000
Q ss_pred ceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCC---
Q 012699 270 FASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDS--- 336 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--- 336 (458)
+.|..+|.++++.+..++...+. ..........+|+ .++.++.+|.++++|.++++.+...+....
T Consensus 275 -~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 275 -SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp -TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred -eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 26999999999999888754332 1222223333564 788999999999999999988743321110
Q ss_pred ------------------------------------CeEEEEEcCCCCEEEEecC-------------------------
Q 012699 337 ------------------------------------AISSILFGPDETSIFSLGS------------------------- 355 (458)
Q Consensus 337 ------------------------------------~v~~~~~~~~~~~l~~~~~------------------------- 355 (458)
.-..++++|+..++++...
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 0112688888777776522
Q ss_pred --------------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEc
Q 012699 356 --------------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQV 415 (458)
Q Consensus 356 --------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~ 415 (458)
+|.|+.||+.+++.. |..... .....-.++..+.++++++.|+.++.||.
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~-W~~~~~---------~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAA-WEVPYV---------TIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEE-EEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeE-eEccCC---------CCccCccceECCCEEEEECCCCcEEEEEC
Confidence 377999999886543 332211 11222356678889999999999999999
Q ss_pred cCCCcccccC-CCCCcEEEEEECCCCCeEE
Q 012699 416 RGHASGMRTL-PHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 416 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 444 (458)
++++.+.++. ++.....-+.|..+|+..+
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 9998876665 3332234467778888433
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.37 E-value=2.1e-11 Score=108.35 Aligned_cols=256 Identities=6% Similarity=-0.056 Sum_probs=162.0
Q ss_pred cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc----------CCCcEEEEEcCCCceeeeccCCCC----
Q 012699 170 TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT----------ADGGIKAWNVDAKRVVCDLNTTDA---- 235 (458)
Q Consensus 170 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~---- 235 (458)
+|.+.|..+.+.+..... ...+ .+.++ +++++++++. .++.|.+||+.+++.+.++.....
T Consensus 47 ~vsvID~~t~~v~~~i~v--G~~P--~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG--AFLS--LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEE--CTTC--EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeC--CCCC--ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 788999988876543222 2233 79999 5666666664 368899999999999988865411
Q ss_pred -CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEE--EECCCCceeEEeecCCCCCcEEEEEEccCC-CEEEEE
Q 012699 236 -FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTV--WNMKTWKAMTVLPLGEDPPAITSLCFNHNG-KILAAS 311 (458)
Q Consensus 236 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i--~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~ 311 (458)
......+.++|++++++.+..... ..+.+ +|+.+ ...+...+. ..+.|++ ..+++.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~-----------~~v~V~~iD~~t---v~~i~v~~~------~~~~p~g~~~~~~~ 181 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSS-----------AAAGLSVPGASD---DQLTKSASC------FHIHPGAAATHYLG 181 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSS-----------CEEEEEETTTEE---EEEEECSSC------CCCEEEETTEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCC-----------CeEEEEEEchhh---ceEEECCCc------eEEccCCCeEEEEE
Confidence 023568999999999988764210 37888 88877 444543221 1233443 344556
Q ss_pred ecCCeEEEEeCCC-----Cceee----eeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC-
Q 012699 312 AVDGMIHMFDMSA-----GLQIT----GWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD- 381 (458)
Q Consensus 312 ~~dg~i~v~d~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~- 381 (458)
+.||.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|+......... .. .+..
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~-~~-~~~~~ 254 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA-AI-DGNES 254 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC-CC-CSSCT
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE-EE-Eeccc
Confidence 6788888888876 43321 122223343 3 566666666666 89999998753221110 00 0000
Q ss_pred ----CCCCCCceeEEEEccCCCEEEEEeC---------CccEEEEEccCCCcccccCCCCCcEEEEEECCCCC-eEEEec
Q 012699 382 ----PESSKSCRHEMALDVNGRRLLVTSG---------SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP-MFLTGS 447 (458)
Q Consensus 382 ----~~~~~~~v~~~~~s~~g~~l~~~~~---------~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 447 (458)
..........++++||++.++++.. .+.+.++|+.+.+.+..+... .....++|+|||+ ++++..
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEE
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcceEEECCCCCEEEEEcc
Confidence 0001111222789999999887643 245679999998765555422 3689999999998 566666
Q ss_pred -CCCcEEEEeCC
Q 012699 448 -ADHSVQVMSLS 458 (458)
Q Consensus 448 -~dg~v~iw~l~ 458 (458)
.++.|.++|+.
T Consensus 334 ~~~~~VsVID~~ 345 (368)
T 1mda_H 334 AGTEVLDIYDAA 345 (368)
T ss_dssp TTTTEEEEEESS
T ss_pred CCCCeEEEEECC
Confidence 59999999973
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=1.9e-10 Score=111.90 Aligned_cols=269 Identities=13% Similarity=0.126 Sum_probs=172.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccc-c--CCCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATI-Y--CGTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVC 228 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~--~~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~ 228 (458)
+..|+.++.|+.+..+|..+++........ . ....+.. ... .++ .+++++. +|.|+.+|..+|+.+.
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 457888888999999999888765432221 0 0011111 111 234 4444443 6899999999999887
Q ss_pred eccCCCCCC------------------------------ceeeeeecCCCCeEEEeecccCC----------CCcceeec
Q 012699 229 DLNTTDAFP------------------------------SVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSW 268 (458)
Q Consensus 229 ~~~~~~~~~------------------------------~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 268 (458)
.+....... ....++++|++..++.+..+... +.....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~-- 282 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL-- 282 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT--
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee--
Confidence 765432210 01246778888877776654210 000000
Q ss_pred cceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCC---CEEEEEecCCeEEEEeCCCCceeeeeeCCCC--
Q 012699 269 GFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNG---KILAASAVDGMIHMFDMSAGLQITGWPAHDS-- 336 (458)
Q Consensus 269 ~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-- 336 (458)
+.|..+|.++++.+..++...+. .....+....+| +.++.++.+|.++++|..+++.+..++....
T Consensus 283 --~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 283 --ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp --TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred --EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 36999999999999888764432 122233344477 6889999999999999999998876652210
Q ss_pred ---------Ce------------------------EEEEEcCCCCEEEEecC----------------------------
Q 012699 337 ---------AI------------------------SSILFGPDETSIFSLGS---------------------------- 355 (458)
Q Consensus 337 ---------~v------------------------~~~~~~~~~~~l~~~~~---------------------------- 355 (458)
++ ..++++|++.++++...
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 11 14688898888877543
Q ss_pred ---------------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 356 ---------------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 356 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
.|.|..||+.+++. .|.... ...+....+..++.++++++.++.+++||..+++.
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~-~W~~~~---------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKA-AWSVEH---------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTTEE-EEEEEE---------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccCCCCCccEEEEEeCCCCcE-EeecCC---------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 27899999987654 443321 11233445677888999999999999999999987
Q ss_pred ccccC-CCCCcEEEEEECCCCCeEE
Q 012699 421 GMRTL-PHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 421 ~~~~~-~h~~~v~~~~~~~~~~~l~ 444 (458)
+..+. ++.....-+.|.++|+.++
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEE
Confidence 76665 3333334456778887444
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.36 E-value=2.9e-10 Score=110.51 Aligned_cols=287 Identities=10% Similarity=0.031 Sum_probs=179.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC---------CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC---------GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
+..|+.++.++.|.-+|..+++.+........ ......+++. +..+++++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE---CCEEEEEcCCCEEEEEECCCCCEEee
Confidence 44666777788888888887765432211100 0001123332 45788889999999999999999887
Q ss_pred ccCC-CCC--Cceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-----------
Q 012699 230 LNTT-DAF--PSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP----------- 294 (458)
Q Consensus 230 ~~~~-~~~--~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~----------- 294 (458)
+... ... ..+.. ... .+..++.+...... ..+|.|+.+|.++++.+..+.......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEY-------GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp EETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred ecCCcCcCcCcccccCcEE--ECCEEEEEeccccc-------CCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 7654 110 01111 111 13344444321100 013699999999999988876533210
Q ss_pred -------------------cEEEEEEccCCCEEEEEecCC-------------------eEEEEeCCCCceeeeeeC--C
Q 012699 295 -------------------AITSLCFNHNGKILAASAVDG-------------------MIHMFDMSAGLQITGWPA--H 334 (458)
Q Consensus 295 -------------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~--~ 334 (458)
....++++|++..+++++.++ .|..+|.++++.+..++. |
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~ 304 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG 304 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC
Confidence 113578899988999887664 599999999998877663 2
Q ss_pred C-------CCeEEEEEcCCC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcc-------------------------
Q 012699 335 D-------SAISSILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF------------------------- 379 (458)
Q Consensus 335 ~-------~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------------------------- 379 (458)
. ....-+....+| +.++.++.+|.++++|..+++.+.........
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 1 122223333477 68999999999999999987654432211000
Q ss_pred cCCCC-CCCceeEEEEccCCCEEEEEeCC-------------------------------------------ccEEEEEc
Q 012699 380 CDPES-SKSCRHEMALDVNGRRLLVTSGS-------------------------------------------VRAPIYQV 415 (458)
Q Consensus 380 ~~~~~-~~~~v~~~~~s~~g~~l~~~~~~-------------------------------------------~~i~i~~~ 415 (458)
..+.. ....-..++++|++.++++...+ +.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 00000 00011257899999888876432 77999999
Q ss_pred cCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 416 RGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 416 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.+++...+.. +..++.+..+..++.+++.++.||.+++||..
T Consensus 465 ~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~ 506 (677)
T 1kb0_A 465 VAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA 506 (677)
T ss_dssp TTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred CCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC
Confidence 9887655543 33445555667788888889999999999963
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.32 E-value=5.9e-10 Score=103.11 Aligned_cols=238 Identities=10% Similarity=0.047 Sum_probs=155.6
Q ss_pred EEEEEcCCCcEEEEEcCCCceeeeccCCCCC-------------------------------------CceeeeeecC--
Q 012699 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAF-------------------------------------PSVLDLKCSP-- 246 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------------------------------------~~v~~~~~~~-- 246 (458)
.+.+|+..|.++++-+.+++.+..+...... +.......+.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 3667888999999999888876655432211 0111122222
Q ss_pred ---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEE-c-cCCCEEEEEe---------
Q 012699 247 ---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCF-N-HNGKILAASA--------- 312 (458)
Q Consensus 247 ---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~--------- 312 (458)
||++++....+. +.|.+.|+.+.+....+.+... ..+..+++ + |+++++++++
T Consensus 97 g~~DG~~lfVnd~~~------------~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 97 GKYDGRFLFMNDKAN------------TRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp TEEEEEEEEEEETTT------------TEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred CCcCCCEEEEEcCCC------------CEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCC
Confidence 455555544433 5899999999998887765432 34788888 5 9999999884
Q ss_pred ---------cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCC---------------eEEEEeccCCC
Q 012699 313 ---------VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDG---------------KIIEWSLQNQG 368 (458)
Q Consensus 313 ---------~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~ 368 (458)
.++.+.+.|..+.+.+.++.... ....++++|+|+++++.+.+. .+.+.|.....
T Consensus 164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred CcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 34689999999998888877433 456788999999998887653 24444432110
Q ss_pred --------------eeEEeec--CCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc-----------
Q 012699 369 --------------QVLWTRN--CSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS----------- 420 (458)
Q Consensus 369 --------------~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~----------- 420 (458)
.++.... ...+............+.++|||+++++++. +++|.++|+.+.+.
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 0000000 0000000112234677999999999888775 68999999986521
Q ss_pred ccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 421 GMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+.....-......++|+|+|...++.--|+.|.+|++
T Consensus 323 v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 323 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred eEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 1112233467899999999965567778999999996
No 231
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.32 E-value=9.5e-09 Score=93.05 Aligned_cols=262 Identities=14% Similarity=0.113 Sum_probs=160.0
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCce-EEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEI-MSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF 236 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 236 (458)
++..++.++.++.|..+|..+++....... ...+ ...... +..++.++.++.|..+|..+++.+.........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKV---AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEEC---SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeC---CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 345777888899999999988876432211 1111 111222 346788889999999999999988766553211
Q ss_pred Cc---eeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-----EEEEEEcc--CCC
Q 012699 237 PS---VLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-----ITSLCFNH--NGK 306 (458)
Q Consensus 237 ~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~~--~~~ 306 (458)
.. ....... +..++.+..+ |.+..+|..+++............. +..+...| .+.
T Consensus 176 ~~~~~~~~~~~~--~~~v~~g~~~-------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (376)
T 3q7m_A 176 LSLRGESAPTTA--FGAAVVGGDN-------------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG 240 (376)
T ss_dssp ---CCCCCCEEE--TTEEEECCTT-------------TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT
T ss_pred eeecCCCCcEEE--CCEEEEEcCC-------------CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC
Confidence 00 0111111 2344444443 5999999999998877764321100 00011111 245
Q ss_pred EEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCC
Q 012699 307 ILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSK 386 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 386 (458)
.+++++.++.+..+|..+++.+..... .....+.. ++..++.++.++.+..+|..+++.. +...... .
T Consensus 241 ~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~-w~~~~~~-------~ 308 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTL-WTQSDLL-------H 308 (376)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEE-EEECTTT-------T
T ss_pred EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEE-EeecccC-------C
Confidence 788888899999999999988766542 33444444 3567888888999999999886543 3322100 0
Q ss_pred CceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEE-EEEECCCCCeEEEecCCCcEEEEe
Q 012699 387 SCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAIT-TVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
........ .+..|++++.+|.++.+|..+++...........+. .... .+..|+.++.||.|..|+
T Consensus 309 ~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 309 RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 11111222 356788899999999999988876554433222222 1222 245678888999999987
No 232
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.30 E-value=2.9e-10 Score=101.08 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=161.1
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.+.++...+++. |..++.+ +..+|. +++...... ............ +..+..++.++.|..+|.. ++...
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~--~~~~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFD--TKKAIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSC--C-----CCEEEE---TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEE--CCCCcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 345666666664 4444444 777875 433322111 111112222332 4457778888999999998 77665
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
...... ..+..+...+++.+++. +.+ +.+..+|.. ++....+... ...+.++...+++.+
T Consensus 131 ~~~~~~--~~~~~~~~~~~g~l~vg-t~~-------------~~l~~~d~~-g~~~~~~~~~--~~~~~~~~~d~~g~l- 190 (330)
T 3hxj_A 131 RFKTKK--AIYATPIVSEDGTIYVG-SND-------------NYLYAINPD-GTEKWRFKTN--DAITSAASIGKDGTI- 190 (330)
T ss_dssp EEECSS--CCCSCCEECTTSCEEEE-CTT-------------SEEEEECTT-SCEEEEEECS--SCCCSCCEECTTCCE-
T ss_pred EEcCCC--ceeeeeEEcCCCEEEEE-cCC-------------CEEEEECCC-CCEeEEEecC--CCceeeeEEcCCCEE-
Confidence 554432 34556667767765553 333 489999998 7777666543 234666777777764
Q ss_pred EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCc
Q 012699 309 AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 309 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (458)
.+++ +.|..+| .+++.+..+......+.++...+++. |..++.++.+..+|.. +.. .+..... ...
T Consensus 191 ~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~-~~~~~~~--------~~~ 256 (330)
T 3hxj_A 191 YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTE-KWRFKTG--------KRI 256 (330)
T ss_dssp EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCE-EEEEECS--------SCC
T ss_pred EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCE-eEEeeCC--------CCc
Confidence 4455 7899999 77777777666666788888888875 5556667888888743 332 2322211 111
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
+..+.+.+++ .|.+++.++.+..+|. +++...........+.++...++++ |..++.+|.+++...
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFN 322 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence 2334555555 4666778888999986 4433333333445677788888887 556888999988653
No 233
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.29 E-value=1.6e-08 Score=86.65 Aligned_cols=252 Identities=8% Similarity=0.021 Sum_probs=154.3
Q ss_pred CEEEEEeCCCcEEEEecCCCCCCCc--cccc-cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCC
Q 012699 160 NNIASASVDGTVRIWTYDSSTPASR--NATI-YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAF 236 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 236 (458)
++|+.+.. +.|+.++++....... .... .....+..++|++.++.++++-..++.|..+++..+.....+.. ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--DL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--TC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC--CC
Confidence 45555543 4788888876543210 0011 11235678999965677777777788999999987654333322 12
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec---
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--- 313 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 313 (458)
.....+++.+++..++.+.... +.|.++++.......... ........++++|++..|+.+..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~------------~~I~~~~~~g~~~~~~~~--~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQL------------DRIEVAKMDGTQRRVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred CCccEEEEEecCCeEEEEECCC------------CEEEEEEcCCCCEEEEEE--CCCCCccEEEEeeCCCEEEEEECCCC
Confidence 4678899999776666554432 489999987543322222 12245789999997666666554
Q ss_pred CCeEEEEeCCCCceeeeee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeE
Q 012699 314 DGMIHMFDMSAGLQITGWP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHE 391 (458)
Q Consensus 314 dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 391 (458)
.+.|..+++.. .....+. ........++++|++..|+ +-...+.|.++|.......... . ....+..
T Consensus 145 ~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~---------~~~~P~g 213 (267)
T 1npe_A 145 NPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-E---------GLQYPFA 213 (267)
T ss_dssp SCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-E---------CCCSEEE
T ss_pred CcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-c---------CCCCceE
Confidence 36888888764 3333222 2334678999999876655 4455788999998753221111 0 1123455
Q ss_pred EEEccCCCEEEEEe-CCccEEEEEccCCCcccccCCC-CCcEEEEEECCCCC
Q 012699 392 MALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTLPH-GAAITTVDWHPTLP 441 (458)
Q Consensus 392 ~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~ 441 (458)
++. ++..|+++. .++.|..++..+++....+... ......+++.|++.
T Consensus 214 i~~--d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 214 VTS--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEE--ETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEE--eCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 655 355666555 4689999999877655444422 23477788888764
No 234
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=1.3e-10 Score=103.39 Aligned_cols=257 Identities=12% Similarity=-0.007 Sum_probs=153.3
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEe----------CCCcEEEEecCCCCCCCccccccC-----CCceEEEEEecCC
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASAS----------VDGTVRIWTYDSSTPASRNATIYC-----GTEIMSLEWECKS 203 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~ 203 (458)
.+.++..-..+ .+.++||+++++.+. .+++|.+||..+.+.......... ......++++ ++
T Consensus 58 v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-pD 134 (368)
T 1mda_H 58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-AS 134 (368)
T ss_dssp EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TT
T ss_pred EEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-CC
Confidence 33444433345 799999999988886 378999999999887643322100 1345678899 67
Q ss_pred CeEEEEEcC--CCcEEE--EEcCCCceeeeccCCCCCCceeeeeecCCCCeE-EEeecccCCCCcceeeccceeEEEEEC
Q 012699 204 DRLLLIGTA--DGGIKA--WNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIF-VSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 204 ~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
+++++++.. +..+.+ +|+.+ +..+.... . ....|++... ++.+.+ |.+.+.|+
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~--~~~~p~g~~~~~~~~~d-------------g~~~~vd~ 192 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----C--FHIHPGAAATHYLGSCP-------------ASLAASDL 192 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----C--CCCEEEETTEEECCCCT-------------TSCEEEEC
T ss_pred CCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----c--eEEccCCCeEEEEEcCC-------------CCEEEEEC
Confidence 777777764 457888 88877 33333221 1 1233444332 222233 46666777
Q ss_pred CC-----CceeE----EeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc--eeeeeeCC----------CCC
Q 012699 279 KT-----WKAMT----VLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL--QITGWPAH----------DSA 337 (458)
Q Consensus 279 ~~-----~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------~~~ 337 (458)
.+ ++... .+... ..+. . ++++..++..+. +.+.+.|..... .+..+... ...
T Consensus 193 ~~~~~~~~~v~~~~t~~i~vg--~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 193 AAAPAAAGIVGAQCTGAQNCS--SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CSSCCCCEECCCCSCTTSCBC--SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred ccccccCCeEEEEeeeeeeCC--CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 65 33221 11111 1223 3 666666666666 999999986532 22222111 011
Q ss_pred eEEEEEcCCCCEEEEecC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEE-EEe-C
Q 012699 338 ISSILFGPDETSIFSLGS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLL-VTS-G 406 (458)
Q Consensus 338 v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~-~ 406 (458)
...++++|+++.++.+.. ++.+.++|+.+.+...... .......++|+|||++++ +.. .
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----------vg~~p~gi~~s~Dg~~l~va~~~~ 335 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----------NGHDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----------EEEEECEEEECCSSSCEEEEEETT
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE----------CCCCcceEEECCCCCEEEEEccCC
Confidence 222689999998886533 2356699999876543221 122478899999998554 444 4
Q ss_pred CccEEEEEccCCCcccccCCCCCcEEEEEECC
Q 012699 407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHP 438 (458)
Q Consensus 407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~ 438 (458)
++.|.++|+.+.+.+..+.. ......+++.+
T Consensus 336 ~~~VsVID~~t~kvv~~I~v-g~~P~~i~~~~ 366 (368)
T 1mda_H 336 TEVLDIYDAASDQDQSSVEL-DKGPESLSVQN 366 (368)
T ss_dssp TTEEEEEESSSCEEEEECCC-CSCCCEEECCC
T ss_pred CCeEEEEECCCCcEEEEEEC-CCCCCEEEeec
Confidence 89999999999866544442 23455666554
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.28 E-value=8.5e-09 Score=93.37 Aligned_cols=262 Identities=13% Similarity=0.130 Sum_probs=160.6
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC-------CCceE-EEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeec
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC-------GTEIM-SLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDL 230 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 230 (458)
+..++.++.++.|..+|..+++.......... ...+. .... .+..+++++.++.|..+|.++++.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 55788888889999999988876432221110 12222 2222 3456777888999999999999988766
Q ss_pred cCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc---EEEEEEccCCCE
Q 012699 231 NTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA---ITSLCFNHNGKI 307 (458)
Q Consensus 231 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~ 307 (458)
...... ....... +..++.+..+ +.+..+|.++++.+..+........ ....... +..
T Consensus 130 ~~~~~~--~~~p~~~--~~~v~v~~~~-------------g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~ 190 (376)
T 3q7m_A 130 KVAGEA--LSRPVVS--DGLVLIHTSN-------------GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA 190 (376)
T ss_dssp ECSSCC--CSCCEEE--TTEEEEECTT-------------SEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE
T ss_pred eCCCce--EcCCEEE--CCEEEEEcCC-------------CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE
Confidence 554321 1111111 2344444444 5999999999998887764322100 0112222 457
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCC----eE---EEEEcC--CCCEEEEecCCCeEEEEeccCCCeeEEeecCCc
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSA----IS---SILFGP--DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~----v~---~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 378 (458)
+++++.++.+..+|..+++.+......... +. .+.-.| .+..++.++.++.+..+|..+++.. +.....
T Consensus 191 v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~-w~~~~~- 268 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM-WKRELG- 268 (376)
T ss_dssp EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE-EEECCC-
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE-eeccCC-
Confidence 888888999999999999887766532110 00 011112 3457888888999999999876544 332211
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
....+. .++..+++++.++.++.+|..+++....... ....+..... .+..|+.++.+|.|.++|.
T Consensus 269 ---------~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 269 ---------SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp ---------CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEET
T ss_pred ---------CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEEC
Confidence 122233 3467888888999999999988876554431 1122222232 2456888888999999885
No 236
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.27 E-value=5e-10 Score=103.59 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=153.2
Q ss_pred CCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCceeeeee-c-CCCCeEEEeecccC----CCCcce-eeccceeEE
Q 012699 203 SDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKC-S-PVEPIFVSAAASRR----YGSSNI-YSWGFASLT 274 (458)
Q Consensus 203 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~~~~~~~~----~~~~~~-~~~~~g~i~ 274 (458)
++++++... .++.|.+.|+++.++...+..... .....+++ . |++.++++++.... .+..+. ....++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 455555554 466799999999998875543322 34677887 5 99999988864321 111111 123347999
Q ss_pred EEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--------------------------------------e
Q 012699 275 VWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--------------------------------------M 316 (458)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------------------------------~ 316 (458)
+.|..+.+....+...+. ...++++|+|+++++.+.+. .
T Consensus 179 vID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 999999999888876553 35577999999999887543 4
Q ss_pred EEEEeCCC--Cce-eeeeeCCCCCeEEEEEcCCCCEEEEec-CCCeEEEEeccCCCeeEE--eecCCcccCCCCCCCcee
Q 012699 317 IHMFDMSA--GLQ-ITGWPAHDSAISSILFGPDETSIFSLG-SDGKIIEWSLQNQGQVLW--TRNCSRFCDPESSKSCRH 390 (458)
Q Consensus 317 i~v~d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~ 390 (458)
|.|.|.++ ++. +..++. .....++.++|||+++++++ .+.+|.++|+.+.+.... ..................
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~ 334 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 334 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence 67777776 444 444443 23456899999999877665 488999999996421000 000000111123445688
Q ss_pred EEEEccCCCEEEE-EeCCccEEEEEccC----------CCcccccCCCCCc-----EEEEEECCCCCeEEEec
Q 012699 391 EMALDVNGRRLLV-TSGSVRAPIYQVRG----------HASGMRTLPHGAA-----ITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 391 ~~~~s~~g~~l~~-~~~~~~i~i~~~~~----------~~~~~~~~~h~~~-----v~~~~~~~~~~~l~s~~ 447 (458)
.++|+|+| ++++ ..-+++|.+|++.. ...+.++..|-.+ -.++.++|||++|+++.
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N 406 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 406 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence 99999999 5554 44589999999976 2222222233222 12335689999988864
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.21 E-value=1.3e-08 Score=85.33 Aligned_cols=210 Identities=11% Similarity=0.046 Sum_probs=144.6
Q ss_pred eeeeeeeeccCCC--CeEEEEeCCCCCEEEEEeC--CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc
Q 012699 136 KVDFLETFLGHTS--PISCCRFSSSGNNIASASV--DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT 211 (458)
Q Consensus 136 ~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 211 (458)
..+.+.++. |.. ....+.|+|++.++++.+. ++.|++.|+.+++....... ........+++. ++.+.++.-
T Consensus 8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDSYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEE--TTEEEEEET
T ss_pred CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCCcceEEEEEe--CCEEEEEEe
Confidence 334556663 443 3579999998755555543 57999999999886543221 122223355554 456666677
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
.++.+.++|..+.+.+.++... . .. ...++++++.++.+..+ +.|.++|..+.+....+....
T Consensus 84 ~~~~v~viD~~t~~v~~~i~~g-~-~~--g~glt~Dg~~l~vs~gs-------------~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 84 LKNIGFIYDRRTLSNIKNFTHQ-M-KD--GWGLATDGKILYGSDGT-------------SILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp TCSEEEEEETTTTEEEEEEECC-S-SS--CCEEEECSSSEEEECSS-------------SEEEEECTTTCCEEEEEECEE
T ss_pred cCCEEEEEECCCCcEEEEEECC-C-CC--eEEEEECCCEEEEECCC-------------CeEEEEECCCCcEEEEEEECC
Confidence 7899999999999998887654 1 11 23355677766655443 599999999999888887543
Q ss_pred CC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCE-EEEec
Q 012699 292 DP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETS-IFSLG 354 (458)
Q Consensus 292 ~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~-l~~~~ 354 (458)
.. ..++.+.|. ++...+....++.|.+.|..+++.+..+... ....+.|+|+|+++. ++++.
T Consensus 147 ~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 22 236788888 6654444445789999999999998887632 135689999998864 55666
Q ss_pred CCCeEEEEeccCC
Q 012699 355 SDGKIIEWSLQNQ 367 (458)
Q Consensus 355 ~dg~i~iwd~~~~ 367 (458)
..+.+...++...
T Consensus 226 ~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 LWPKLFEIKLHLV 238 (266)
T ss_dssp TCSEEEEEEEEEC
T ss_pred CCCeEEEEEEecc
Confidence 7888988888754
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=6.9e-12 Score=113.00 Aligned_cols=204 Identities=15% Similarity=0.156 Sum_probs=110.5
Q ss_pred CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc
Q 012699 203 SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK 282 (458)
Q Consensus 203 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~ 282 (458)
++..+++++.||.|+.||..+|+.+..+.. . .+.+..+..++..+++++.+ |.|+.||.++++
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~---~~~s~p~~~~g~~~v~~s~d-------------g~l~a~d~~tG~ 70 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D---PVLQVPTHVEEPAFLPDPND-------------GSLYTLGSKNNE 70 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C---CSCCCC-----CCEEECTTT-------------CCEEEC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C---CceecceEcCCCEEEEeCCC-------------CEEEEEECCCCc
Confidence 466788999999999999999999887765 2 34444455666666666555 699999999888
Q ss_pred eeEEeecCCCCCcEE-EEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 283 AMTVLPLGEDPPAIT-SLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 283 ~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
.+........ ..+. +..+. .+..+++|+.++.++.||.++|+.+..+..+. ...++|++..+++++.|+.|+.
T Consensus 71 ~~w~~~~~~~-~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 71 GLTKLPFTIP-ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITM 144 (369)
T ss_dssp CSEECSCCHH-HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEEC
T ss_pred eeeeeeccCc-cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEE
Confidence 7766543210 0010 01111 34567888889999999999999888776543 2455678889999999999999
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCC---CEEEEEeCCccEEEEEccCCCcccccCCCCCcE-EEEEEC
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNG---RRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI-TTVDWH 437 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v-~~~~~~ 437 (458)
||.++++..- ...... ....+++++. ..+++++.++.++.||..+++...... ...++ ....++
T Consensus 145 ~d~~tG~~~W-~~~~~~----------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~ 212 (369)
T 2hz6_A 145 YDTKTRELRW-NATYFD----------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQ 212 (369)
T ss_dssp CCSSSSSCCC-EEEEEE----------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECT
T ss_pred EECCCCCEEE-eEeccc----------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEec
Confidence 9998765432 211100 1122233332 567778899999999998886655443 23333 334555
Q ss_pred CCCC
Q 012699 438 PTLP 441 (458)
Q Consensus 438 ~~~~ 441 (458)
+++.
T Consensus 213 ~dg~ 216 (369)
T 2hz6_A 213 REGL 216 (369)
T ss_dssp TSSC
T ss_pred CCce
Confidence 5654
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.19 E-value=1.2e-06 Score=87.62 Aligned_cols=283 Identities=10% Similarity=0.062 Sum_probs=173.4
Q ss_pred CCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE
Q 012699 146 HTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN 220 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 220 (458)
+...|.++...+++.+.+ |+.++-+..||..+++....... ......|.++... .++. |..|+.+ -|.+||
T Consensus 213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lWigt~~-Gl~~~~ 288 (795)
T 4a2l_A 213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD-SQNR-LWIGTFN-DLNIYH 288 (795)
T ss_dssp -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC-TTSC-EEEEESS-CEEEEE
T ss_pred CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc-CCCC-EEEEeCC-hhheEc
Confidence 346788888887776544 44444488888766432211000 1123568888877 4555 4445555 588999
Q ss_pred cCCCceeeeccCC-----CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC----C
Q 012699 221 VDAKRVVCDLNTT-----DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG----E 291 (458)
Q Consensus 221 ~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~----~ 291 (458)
..+++........ -....|.++...+++.+.+.... +.|..++..+.......... -
T Consensus 289 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~~~~~~~~l 354 (795)
T 4a2l_A 289 EGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF--------------GGLNYYHPIRNRFKNIRNIPYKNSL 354 (795)
T ss_dssp TTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS--------------SCEEEECGGGGSSEEECCCTTSSSC
T ss_pred CCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC--------------CCeEEeCCCcccceEEcCCCCCCCC
Confidence 8877654332211 11246888988888876654432 37888887654432211100 1
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--------CCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--------AHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
....|.++...++|. |.+|+.++-|..||..+++...... .....|.++...++++.|..|+.++-+..||
T Consensus 355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 234699999998886 5567778779999987665432211 1235789999988887566777777899999
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC------CCCCcEEEEEEC
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL------PHGAAITTVDWH 437 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~------~h~~~v~~~~~~ 437 (458)
..++........ ........|.++...++|++.+.. . +.+.+|+..+........ -....|.++...
T Consensus 434 ~~~~~~~~~~~~-----~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 506 (795)
T 4a2l_A 434 RNSGQVENFNQR-----NSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRD 506 (795)
T ss_dssp TTTCCEEEECTT-----TSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEEC
T ss_pred CCCCcEEEeecC-----CCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEEC
Confidence 876543221110 111234578999999988866644 4 458889887643211110 123679999999
Q ss_pred CCCCeEEEecCCCcEEEEe
Q 012699 438 PTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 438 ~~~~~l~s~~~dg~v~iw~ 456 (458)
++|++.+... +| |..|+
T Consensus 507 ~~g~lWigt~-~G-l~~~~ 523 (795)
T 4a2l_A 507 SHKRLWIGGE-EG-LSVFK 523 (795)
T ss_dssp TTCCEEEEES-SC-EEEEE
T ss_pred CCCCEEEEeC-Cc-eEEEe
Confidence 9998666544 44 66665
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.19 E-value=1.3e-06 Score=87.22 Aligned_cols=282 Identities=9% Similarity=0.048 Sum_probs=173.2
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc-----cccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEc
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA-----TIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNV 221 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 221 (458)
...|.++...++|.+.+ |+.+ -+.+|+..+........ .......|.++... .++. |..|+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D-~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMD-SQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEEC-TTSC-EEEEESSSCEEEECG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEe-CCcC-EEEEECCCCeEEeCC
Confidence 35699999998887544 4445 48888876553221100 11123568888887 4444 566777778999987
Q ss_pred CCCceeeeccC----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC------C
Q 012699 222 DAKRVVCDLNT----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG------E 291 (458)
Q Consensus 222 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~------~ 291 (458)
.++........ .-....|.++...+++.+.+... + +.|..||..+++........ -
T Consensus 338 ~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~-~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~~l 403 (795)
T 4a2l_A 338 IRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTN-D-------------GGLNLYNPITQRFTSYTLQEDESARGI 403 (795)
T ss_dssp GGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEES-S-------------SCEEEECTTTCCEEEECCC------CC
T ss_pred CcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEEC-C-------------CCeEEEcCCCCcEEEEecCCCCcccCC
Confidence 76543221111 11124588888888877665433 2 37888998776544322111 1
Q ss_pred CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee----CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCC
Q 012699 292 DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP----AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 367 (458)
....|.++...++++.|.+|+.++-|.+||..+++...... .+...|.++...++|.+.+.. .+ -+.+||..+.
T Consensus 404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~ 481 (795)
T 4a2l_A 404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQR 481 (795)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTT
T ss_pred CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCC
Confidence 13568999999888867778887789999988765432211 234579999998888755544 44 5888987754
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC-------CCCCcEEEEEECCCC
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL-------PHGAAITTVDWHPTL 440 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~ 440 (458)
.... .... ..........|.++..+++|++.+... +.+..|+..+... .+. .....|.++...++|
T Consensus 482 ~~~~-~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 482 SFTT-IEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG 554 (795)
T ss_dssp EEEE-CCBC--TTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred eEEE-cccc--ccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence 2211 1100 000112235688999999998776544 4588888876532 111 134579999999999
Q ss_pred CeEEEecCCCcEEEEeC
Q 012699 441 PMFLTGSADHSVQVMSL 457 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l 457 (458)
.+.++.. .| +..|+.
T Consensus 555 ~lWigT~-~G-l~~~d~ 569 (795)
T 4a2l_A 555 IIWVGTR-EG-FYCFNE 569 (795)
T ss_dssp CEEEEES-SC-EEEEET
T ss_pred CEEEEeC-CC-ceeECC
Confidence 8665443 34 555653
No 241
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.18 E-value=1.9e-08 Score=83.24 Aligned_cols=197 Identities=14% Similarity=0.210 Sum_probs=136.2
Q ss_pred CeeeeeeeeeeccCCCC--eEEEEeCCCCCEEEEEeCCC--cEEEEecCCCCCCCccccccCCCce--EEEEEecCCCeE
Q 012699 133 PEVKVDFLETFLGHTSP--ISCCRFSSSGNNIASASVDG--TVRIWTYDSSTPASRNATIYCGTEI--MSLEWECKSDRL 206 (458)
Q Consensus 133 ~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~ 206 (458)
.....+.++++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.+++...... ..... ..++.. ++.+
T Consensus 27 ~~~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~---l~~~~FgeGit~~--g~~l 99 (262)
T 3nol_A 27 PIYDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE---LGKRYFGEGISDW--KDKI 99 (262)
T ss_dssp CEEEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE---CCTTCCEEEEEEE--TTEE
T ss_pred cccceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe---cCCccceeEEEEe--CCEE
Confidence 34445667777 45444 4788998 676677777766 89999999988664322 22333 334443 4566
Q ss_pred EEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE
Q 012699 207 LLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV 286 (458)
Q Consensus 207 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~ 286 (458)
.++.-.++.+.+||.++.+.+.++.... ....+.+++..++.+..+ +.|.++|..+.+....
T Consensus 100 y~ltw~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~dg~~L~~SdGs-------------~~i~~iDp~T~~v~~~ 161 (262)
T 3nol_A 100 VGLTWKNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHNDQYLIMSDGT-------------PVLRFLDPESLTPVRT 161 (262)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSS-----CCCCEEECSSCEEECCSS-------------SEEEEECTTTCSEEEE
T ss_pred EEEEeeCCEEEEEECccCcEEEEEECCC-----CceEEecCCCEEEEECCC-------------CeEEEEcCCCCeEEEE
Confidence 6666678999999999999998887643 223334566666665544 4999999999999888
Q ss_pred eecCCCC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC------------CCCeEEEEEcCCCCEEE
Q 012699 287 LPLGEDP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH------------DSAISSILFGPDETSIF 351 (458)
Q Consensus 287 ~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~ 351 (458)
+...... ..++.+.|. +|+..+..-.+..|.+.|..+++.+..+... ....+.|+|+|+++.|+
T Consensus 162 I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lf 240 (262)
T 3nol_A 162 ITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLF 240 (262)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEE
T ss_pred EEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEE
Confidence 8764322 345667776 6755554446889999999999988877532 23568999999887777
Q ss_pred EecC
Q 012699 352 SLGS 355 (458)
Q Consensus 352 ~~~~ 355 (458)
..+.
T Consensus 241 VTGK 244 (262)
T 3nol_A 241 VTGK 244 (262)
T ss_dssp EEET
T ss_pred EECC
Confidence 6654
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=111.56 Aligned_cols=187 Identities=14% Similarity=0.106 Sum_probs=102.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCC
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFP 237 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 237 (458)
++..+++++.||.|+.||..+++....... .++.+..+. .++..+++++.||.|+.||.++++.+........ .
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE----DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-E 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC----CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH-H
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC----CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc-c
Confidence 567899999999999999999887543222 333333343 4566777778999999999999887655543210 0
Q ss_pred cee-eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCe
Q 012699 238 SVL-DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGM 316 (458)
Q Consensus 238 ~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 316 (458)
.+. ...+. .+..+++++.+ +.+..||.++++.+..+.... ...++|++..+++++.|+.
T Consensus 82 ~~~~sp~~~-~~~~v~~g~~d-------------g~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~dg~ 141 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMGKKQ-------------DIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRTEYT 141 (369)
T ss_dssp HHTTCSCC------CCCCEEE-------------EEEEEECCC----------------------------EEEEEEEEE
T ss_pred ccccCceEe-cCCEEEEEeCC-------------CEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEecCCE
Confidence 110 11111 23344444444 699999999999887765322 2345678889999999999
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcCCC---CEEEEecCCCeEEEEeccCCCeeEEe
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDE---TSIFSLGSDGKIIEWSLQNQGQVLWT 373 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 373 (458)
|+.||.++++.+..+..+. ....++.++. ..+++++.||.++.||..+++. .|.
T Consensus 142 v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~-~W~ 198 (369)
T 2hz6_A 142 ITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV-LWI 198 (369)
T ss_dssp EECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE-EEE
T ss_pred EEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcE-EEE
Confidence 9999999998876654221 1222333332 4677788999999999987654 443
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.17 E-value=2.9e-08 Score=83.33 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=138.8
Q ss_pred eEEEEEecCCCeEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 194 IMSLEWECKSDRLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
...+.|+ +++.++++.+. ++.|+++|+.+++.+..+....+ .....+++. +..+....... +
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~--g~~lyv~t~~~------------~ 86 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLL--NEKLYQVVWLK------------N 86 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEE--TTEEEEEETTC------------S
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEe--CCEEEEEEecC------------C
Confidence 5789998 44655555443 57999999999999888765432 123344444 44555444333 6
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCC
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPD 346 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~ 346 (458)
.+.++|..+.+.+..+... .+.. ..++++|+.++++..++.|.++|..+.+.+..+.... ..++.+.|. +
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECCCCcEEEEEECC-CCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 9999999999999988765 1111 3356678877777778999999999988887776322 136788887 7
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCcc----cCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCC
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF----CDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGH 418 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~ 418 (458)
+...+....++.|.+.|..+++........... ..........+.++|+|+++.+++++ ..+.++..++...
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 765666656889999999987654443211000 01112234578999999998777666 4688888888654
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.12 E-value=6.1e-08 Score=80.25 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=131.0
Q ss_pred eEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 194 IMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
...+.|+ ++.++.+.+.+| .|+++|+++++.+..+.... ........+++..+....... +
T Consensus 45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~---~~FgeGit~~g~~ly~ltw~~------------~ 107 (262)
T 3nol_A 45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK---RYFGEGISDWKDKIVGLTWKN------------G 107 (262)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT---TCCEEEEEEETTEEEEEESSS------------S
T ss_pred cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC---ccceeEEEEeCCEEEEEEeeC------------C
Confidence 4788887 467777777766 89999999999988876543 233322333444554444322 5
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCC
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPD 346 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~ 346 (458)
.+.+||.++.+.+..+...... ..++++++.|+....++.|.++|..+.+.+.++.... ..++.+.|. +
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG-----~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG-----WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC-----CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EEEEEECccCcEEEEEECCCCc-----eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 9999999999999999875432 2333567777776667889999999988888776422 334567776 7
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC----CCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD----PESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
|+..+..-.++.|.+.|..+++....... ..+.. ......-.+.+|++|+++.|++.+..
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~-~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDL-NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEEC-TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEEC-CcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 76666665688999999998765544322 11111 11233467899999999998888765
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=4.4e-08 Score=95.22 Aligned_cols=287 Identities=13% Similarity=0.087 Sum_probs=171.9
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC--------CCc-eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--------GTE-IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~-v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 229 (458)
+..|+.++.++.|.-+|..+++.+........ ... ...+++. +..++.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeee
Confidence 44666777788888888887765432211100 000 0112222 44678888999999999999998877
Q ss_pred ccCCCCCCceeeeeecC--CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC-CCC------------
Q 012699 230 LNTTDAFPSVLDLKCSP--VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE-DPP------------ 294 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~-~~~------------ 294 (458)
....... ....+...| .+..++.+...... ..+|.|..+|.++++.+..+.... .+.
T Consensus 143 ~~~~~~~-~~~~~~~~P~v~~~~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 214 (668)
T 1kv9_A 143 QQTTDPA-KPYSITGAPRVVKGKVIIGNGGAEY-------GVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA 214 (668)
T ss_dssp EECSCTT-SSCBCCSCCEEETTEEEECCBCTTT-------CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred eccCCCC-CcceecCCCEEECCEEEEeCCCCCc-------CCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccc
Confidence 6653211 001111111 12334443321100 013699999999999998876421 110
Q ss_pred ----------------cEEEEEEccCCCEEEEEecCC-------------------eEEEEeCCCCceeeeeeC--CC--
Q 012699 295 ----------------AITSLCFNHNGKILAASAVDG-------------------MIHMFDMSAGLQITGWPA--HD-- 335 (458)
Q Consensus 295 ----------------~i~~~~~~~~~~~l~~~~~dg-------------------~i~v~d~~~~~~~~~~~~--~~-- 335 (458)
....++++|+..++++++.++ .|..+|.++++.+..++. |.
T Consensus 215 ~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~w 294 (668)
T 1kv9_A 215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW 294 (668)
T ss_dssp TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred ccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccc
Confidence 112468888888898888776 399999999999887764 22
Q ss_pred -----CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCC------------c-ccCC----CC------
Q 012699 336 -----SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCS------------R-FCDP----ES------ 384 (458)
Q Consensus 336 -----~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~-~~~~----~~------ 384 (458)
.+.....+..+|+ .++.++.+|.++++|..+++.+....... . .... ..
T Consensus 295 d~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 374 (668)
T 1kv9_A 295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW 374 (668)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEEC
Confidence 2333333334665 68899999999999999876553221110 0 0000 00
Q ss_pred ----CCCceeEEEEccCCCEEEEEe------------------------------------CCccEEEEEccCCCccccc
Q 012699 385 ----SKSCRHEMALDVNGRRLLVTS------------------------------------GSVRAPIYQVRGHASGMRT 424 (458)
Q Consensus 385 ----~~~~v~~~~~s~~g~~l~~~~------------------------------------~~~~i~i~~~~~~~~~~~~ 424 (458)
....-..++++|+..++++.. .+|.|..||+.+++...+.
T Consensus 375 p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~ 454 (668)
T 1kv9_A 375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV 454 (668)
T ss_dssp SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred CCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEc
Confidence 000112378888877766521 2378999999888765554
Q ss_pred CCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 425 LPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 425 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.. ..+.....+...+.+++.++.||.|+.||.
T Consensus 455 ~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 455 PY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSA 486 (668)
T ss_dssp EE-SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cC-CCCCcCceeEeCCCEEEEECCcccchhhhh
Confidence 32 223333344456778888999999999986
No 246
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.09 E-value=1.5e-07 Score=77.34 Aligned_cols=192 Identities=11% Similarity=0.124 Sum_probs=130.6
Q ss_pred CceEEEEEecCCCeEEEEEcCCC--cEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecc
Q 012699 192 TEIMSLEWECKSDRLLLIGTADG--GIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWG 269 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (458)
.-...+.|+ . +.++.+.+.+| .|+.+|+++++.+..+..... .......+.+..+.......
T Consensus 21 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~---~fgeGi~~~~~~ly~ltw~~----------- 84 (243)
T 3mbr_X 21 AFTEGLFYL-R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP---YFGAGIVAWRDRLIQLTWRN----------- 84 (243)
T ss_dssp CCEEEEEEE-T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT---CCEEEEEEETTEEEEEESSS-----------
T ss_pred cccccEEEE-C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC---cceeEEEEeCCEEEEEEeeC-----------
Confidence 346788997 3 66677777654 899999999999888766542 22222223344444433222
Q ss_pred ceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEc
Q 012699 270 FASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFG 344 (458)
Q Consensus 270 ~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~ 344 (458)
+.+.+||.++.+.+..+...... ..+ .++++.|+++..++.|.++|..+.+.+.++.... ..++.+.+.
T Consensus 85 -~~v~v~D~~tl~~~~ti~~~~~G---wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 85 -HEGFVYDLATLTPRARFRYPGEG---WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp -SEEEEEETTTTEEEEEEECSSCC---CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred -CEEEEEECCcCcEEEEEeCCCCc---eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 59999999999999999865432 233 3567777777778899999999988888776422 245667765
Q ss_pred CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCC-----CCCCCceeEEEEccCCCEEEEEeCC
Q 012699 345 PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDP-----ESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 345 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
+|+.++..-.+..|.+.|..+++...+... ..+... .....-.+.+|++|+++.|++.+..
T Consensus 159 -~G~lyanvw~s~~I~vIDp~tG~V~~~idl-~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 159 -NGELLANVWLTSRIARIDPASGKVVAWIDL-QALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp -TTEEEEEETTTTEEEEECTTTCBEEEEEEC-GGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred -CCEEEEEECCCCeEEEEECCCCCEEEEEEC-CcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 676666665688999999998765544322 111111 1233467899999999888887764
No 247
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.05 E-value=9.4e-08 Score=79.11 Aligned_cols=189 Identities=9% Similarity=0.033 Sum_probs=130.0
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeE
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASL 273 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 273 (458)
...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ .... .....+++. +..+....... +.+
T Consensus 57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~-~FgeGit~~--g~~Ly~ltw~~------------~~v 118 (268)
T 3nok_A 57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGN-IFAEGLASD--GERLYQLTWTE------------GLL 118 (268)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTT-CCEEEEEEC--SSCEEEEESSS------------CEE
T ss_pred cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC-cceeEEEEe--CCEEEEEEccC------------CEE
Confidence 4678886 5788888888999999999999988877 4321 112234443 44444333222 599
Q ss_pred EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCC-----CCeEEEEEcCCCC
Q 012699 274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHD-----SAISSILFGPDET 348 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~ 348 (458)
.+||.++.+.+..+...... ..+ .++++.|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +|+
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eG---wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ 192 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEG---WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV 192 (268)
T ss_dssp EEEETTTTEEEEEEECSSCC---CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEECCcCcEEEEEeCCCce---eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE
Confidence 99999999999999865432 233 3567888887778999999999998888776422 245677876 776
Q ss_pred EEEEecCCCeEEEEeccCCCeeEEeecCCccc---C--CCCCCCceeEEEEccCCCEEEEEeCC
Q 012699 349 SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC---D--PESSKSCRHEMALDVNGRRLLVTSGS 407 (458)
Q Consensus 349 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~--~~~~~~~v~~~~~s~~g~~l~~~~~~ 407 (458)
..+..-.++.|.+.|..+++...+... ..+. . ......-.+.+|++|+++.|++.+..
T Consensus 193 lyanvw~s~~I~vIDp~TG~V~~~Idl-~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 193 IYANIWHSSDVLEIDPATGTVVGVIDA-SALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EEEEETTCSEEEEECTTTCBEEEEEEC-HHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EEEEECCCCeEEEEeCCCCcEEEEEEC-CCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 666555688999999998765443322 1110 0 12234567899999998888777654
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=2.1e-05 Score=78.43 Aligned_cols=284 Identities=11% Similarity=0.002 Sum_probs=168.4
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccc------------cccCCCceEEEEEecCCCeEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNA------------TIYCGTEIMSLEWECKSDRLLLIGTADG 214 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg 214 (458)
...|.++...++|. |..|+..+-|.++|..+........ .......|.++... .++. |-.|+.++
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D-~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD-SFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC-SSCC-EEEEEBSS
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe-CCCC-EEEEecCC
Confidence 35689999888885 5556664568888877654321111 01123568888876 4444 66677677
Q ss_pred cEEEEEcCCCceeeecc-------CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEe
Q 012699 215 GIKAWNVDAKRVVCDLN-------TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVL 287 (458)
Q Consensus 215 ~i~~wd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~ 287 (458)
-|..++..++....... ..-....|.++...+++.+.+.... +.|..||..++......
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG--------------GGINVFENGKRVAIYNK 399 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS--------------SCEEEEETTEEEEECC-
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC--------------CcEEEEECCCCeEEEcc
Confidence 78999887655432211 1112246888888887776554322 36888887654332211
Q ss_pred e-cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 288 P-LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 288 ~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
. .......|.++...+++.+ .+|+.++-+..+|..+++...... .....|.++...+++.+. .++. +-+..||.
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~ 476 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDL 476 (781)
T ss_dssp ----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEES
T ss_pred CCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeC
Confidence 0 0122356899998888764 456776779999987665432211 234679999988888644 4455 56888988
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---C-CCCcEEEEEECCCC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---P-HGAAITTVDWHPTL 440 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~-h~~~v~~~~~~~~~ 440 (458)
.+....... .. .........+.++...++|++.+.....| +..++..+... ..+. + ....|.++...++|
T Consensus 477 ~~~~~~~~~-~~---~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g 550 (781)
T 3v9f_A 477 ASKKVIHHY-DT---SNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKG 550 (781)
T ss_dssp SSSSCCEEE-CT---TTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTS
T ss_pred CCCeEEecc-cC---cccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCC
Confidence 764322211 10 01112246688999999998766443344 77788765421 1111 1 24578999999999
Q ss_pred CeEEEecCCCcEEEEeC
Q 012699 441 PMFLTGSADHSVQVMSL 457 (458)
Q Consensus 441 ~~l~s~~~dg~v~iw~l 457 (458)
.+.++.. +|.|..|+.
T Consensus 551 ~lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 551 QMWLATG-EGLVCFPSA 566 (781)
T ss_dssp CEEEEET-TEEEEESCT
T ss_pred CEEEEEC-CCceEEECC
Confidence 8665544 666466653
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=8.5e-08 Score=93.22 Aligned_cols=271 Identities=14% Similarity=0.175 Sum_probs=161.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~ 229 (458)
+..++.++.|+.|..+|..+++.......... ...+.. ... .++ .++++.. +|.|..+|.++|+.+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 45677888899999999988876543222110 011110 011 134 3444432 58999999999998877
Q ss_pred ccCCCCCC-----------------------------ceeeeeecCCCCeEEEeecccCC----------CCcceeeccc
Q 012699 230 LNTTDAFP-----------------------------SVLDLKCSPVEPIFVSAAASRRY----------GSSNIYSWGF 270 (458)
Q Consensus 230 ~~~~~~~~-----------------------------~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 270 (458)
+....... ....+++.|....++.+..+... +.... .
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~----~ 269 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLY----L 269 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT----T
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCcee----e
Confidence 65321100 01135777777777766554210 00000 0
Q ss_pred eeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCCC----
Q 012699 271 ASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHDS---- 336 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~---- 336 (458)
+.|..+|.++++.+..++...+. .+.....+..+|+ .++.++.+|.++++|..+|+.+...+....
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 36999999999999988764332 2233333334665 688999999999999999998744332110
Q ss_pred --------Ce------------------------EEEEEcCCCCEEEEe-------------------------------
Q 012699 337 --------AI------------------------SSILFGPDETSIFSL------------------------------- 353 (458)
Q Consensus 337 --------~v------------------------~~~~~~~~~~~l~~~------------------------------- 353 (458)
++ ..++++|+...++..
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 00 125677766665531
Q ss_pred -----cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCC
Q 012699 354 -----GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHG 428 (458)
Q Consensus 354 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~ 428 (458)
..+|.|..||+.+++.. |..... .......+...+.++++++.++.++.||..+++.+.++....
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~-W~~~~~---------~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAA-WKVPYP---------THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEE-EEEEES---------SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCCCccceEEEEeCCCCcEE-EEccCC---------CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 13488999999876543 332211 112233455678899999999999999999987776654322
Q ss_pred C-cEEEEEECCCCC-eEEEe
Q 012699 429 A-AITTVDWHPTLP-MFLTG 446 (458)
Q Consensus 429 ~-~v~~~~~~~~~~-~l~s~ 446 (458)
. .-.-+.+..+|+ +++.+
T Consensus 500 ~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 500 GIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcccCceEEEECCEEEEEEE
Confidence 1 112234445666 44443
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.03 E-value=1.9e-07 Score=77.35 Aligned_cols=192 Identities=17% Similarity=0.180 Sum_probs=132.0
Q ss_pred eeeeeeccCCCC--eEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCc
Q 012699 138 DFLETFLGHTSP--ISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGG 215 (458)
Q Consensus 138 ~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 215 (458)
+.++++ .|... ...+.|+ ++.++.+.+.+|.|+++|+++++..... .....--..+++. ++.+.+..-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCE
Confidence 345555 34433 4688887 4567778888899999999999876543 2222112335543 4566666677899
Q ss_pred EEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-
Q 012699 216 IKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP- 294 (458)
Q Consensus 216 i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~- 294 (458)
+.+||.++.+.+.++.... .-..++ +++..++.+..+ +.|.++|..+.+....+.......
T Consensus 118 v~V~D~~Tl~~~~ti~~~~---eGwGLt--~Dg~~L~vSdGs-------------~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSG---EGWGLC--YWNGKLVRSDGG-------------TMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp EEEEETTTTEEEEEEECSS---CCCCEE--EETTEEEEECSS-------------SEEEEECTTTCCEEEEEECEETTEE
T ss_pred EEEEECCcCcEEEEEeCCC---ceeEEe--cCCCEEEEECCC-------------CEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 9999999999998887643 223333 566766665544 499999999999988887644322
Q ss_pred --cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCEEEEec
Q 012699 295 --AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 295 --~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~ 354 (458)
.++.+.|. +|+..+....+..|.+.|..+++.+..+... ....+.|+++|+++.|+..+
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 35677777 6754444446789999999999988776532 23668999999766555444
No 251
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=2.3e-05 Score=78.11 Aligned_cols=279 Identities=11% Similarity=0.055 Sum_probs=164.6
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD 222 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 222 (458)
..|.++...+++.+.+ |+.+ -+.+||..+.+....... ......|.++... .++. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQL-KDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEEC-TTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEEC-CCCC-EEEEeCCCCeEEECCC
Confidence 5699999988887655 4444 588888765543211111 1123568888876 4444 5556665568889988
Q ss_pred CCceeeecc-------C-----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee--
Q 012699 223 AKRVVCDLN-------T-----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-- 288 (458)
Q Consensus 223 ~~~~~~~~~-------~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-- 288 (458)
++....... . .-....|.++...+++.+.+.... +.|..++...........
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~--------------~Gl~~~~~~~~~~~~~~~~~ 352 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWG--------------GGINFISNAPPTFHTWSYSP 352 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBS--------------SCEEEECSSCCSCEEEC---
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecC--------------CeEEEeCCCCCcceeeccCc
Confidence 765432111 0 111246888888888775554422 378888877644332210
Q ss_pred -----cCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee---eCCCCCeEEEEEcCCCCEEEEecCCCeEE
Q 012699 289 -----LGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW---PAHDSAISSILFGPDETSIFSLGSDGKII 360 (458)
Q Consensus 289 -----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 360 (458)
..-....|.++...++|. |.+|+.++-|..||..+++..... ......|.++...+++.+. .|+.++-+.
T Consensus 353 ~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~ 430 (781)
T 3v9f_A 353 TQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNIS 430 (781)
T ss_dssp -CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEE
T ss_pred cccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEE
Confidence 011234699999988876 556676677999998754332211 1234678999988888644 466666788
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCC-----CCCcEEEEE
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLP-----HGAAITTVD 435 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----h~~~v~~~~ 435 (458)
.+|..+..... . .........|.++...++|++.+ |+. +.+..++..+......... ....|.++.
T Consensus 431 ~~~~~~~~~~~-~------~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 501 (781)
T 3v9f_A 431 YYNTRLKKFQI-I------ELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA 501 (781)
T ss_dssp EECSSSCEEEE-C------CSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE
T ss_pred EEcCCCCcEEE-e------ccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEE
Confidence 88876542211 1 00012345688899888887655 444 4588898876532211111 146799999
Q ss_pred ECCCCCeEEEecCCCcEEEEe
Q 012699 436 WHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 436 ~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..++|.+.+....+| +..|+
T Consensus 502 ~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 502 QDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp ECTTCCEEEEESSSC-EEEEC
T ss_pred EcCCCCEEEEEcCCC-EEEEe
Confidence 999998665443344 44454
No 252
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.00 E-value=4.9e-07 Score=79.77 Aligned_cols=259 Identities=10% Similarity=-0.006 Sum_probs=146.4
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc-----------------ccCCCceEEEEEecCCCeEEEEE
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT-----------------IYCGTEIMSLEWECKSDRLLLIG 210 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~~~~~l~~~ 210 (458)
....+++|.+++++++++..++.|..|+..++........ ......+..+++.+.+++++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~- 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV- 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence 3456788999998788888899999998776433210000 0011347889998435655444
Q ss_pred cCCCcEEEEEcCCCceeeecc--CCCCCCceeeeeecC-CCCeEEEeecccC-CCC---cceeeccceeEEEEECCCCce
Q 012699 211 TADGGIKAWNVDAKRVVCDLN--TTDAFPSVLDLKCSP-VEPIFVSAAASRR-YGS---SNIYSWGFASLTVWNMKTWKA 283 (458)
Q Consensus 211 ~~dg~i~~wd~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~~~~g~i~i~d~~~~~~ 283 (458)
...+.|..+|..++....... ..........+++.+ ++.+.++...... ... ........|.|..+|..+++.
T Consensus 98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 444558888877654322111 111113467899999 8887766433110 000 000012236899999877654
Q ss_pred eEEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCc--eeeeeeCCCCCeEEEEEcCCCCEEEEecC-----
Q 012699 284 MTVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGL--QITGWPAHDSAISSILFGPDETSIFSLGS----- 355 (458)
Q Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 355 (458)
...... ....+.++++|+++.|+++ +..+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 178 ~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 332221 1224678999999877665 456899999987521 1111211223 788999999986666544
Q ss_pred -----CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 356 -----DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 356 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
.+.|..+|.. ........... . .....+..+++ .+++++++...++.|..+++...
T Consensus 254 ~~~~~~~~v~~~d~~--G~~~~~~~~~~---g-~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF--GNILEVIPLPP---P-FAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT--SCEEEEEECCT---T-TTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC--CCEEEEEECCC---C-CccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 4567777764 23222211110 0 00233555665 46666555556788999887644
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.99 E-value=1.8e-07 Score=82.65 Aligned_cols=237 Identities=9% Similarity=0.060 Sum_probs=143.2
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-----------------CCCceeeeeecC-CCCeEEEee
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-----------------AFPSVLDLKCSP-VEPIFVSAA 255 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----------------~~~~v~~~~~~~-~~~~~~~~~ 255 (458)
..+++|+ +++++++++..++.|..||..+++......... ....+..+++.+ ++.++++..
T Consensus 21 p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4567788 567767888889999999988765432110000 012467888987 555544433
Q ss_pred cccCCCCcceeeccceeEEEEECCCCceeEEee-cC-CCCCcEEEEEEcc-CCCEEEEEec-----------------CC
Q 012699 256 ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP-LG-EDPPAITSLCFNH-NGKILAASAV-----------------DG 315 (458)
Q Consensus 256 ~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~-~~-~~~~~i~~~~~~~-~~~~l~~~~~-----------------dg 315 (458)
.. .+..+|..++....... .. ......+.+++.+ +|++.++-.. ++
T Consensus 100 ~~--------------~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 100 YY--------------HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TT--------------EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CC--------------CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 22 57788876543222111 01 1113478899999 8976665432 36
Q ss_pred eEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCC--eeEEeecCCcccCCCCCCCceeEE
Q 012699 316 MIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQG--QVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 316 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
.|..||..+++...... .......++++|+++.|+.+ +..+.|..|++.... ..... .. ... ...+
T Consensus 166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~------~~---~~g-P~gi 234 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL------VK---IPN-PGNI 234 (322)
T ss_dssp EEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE------EE---CSS-EEEE
T ss_pred eEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE------Ee---CCC-CCCe
Confidence 79999987665432222 12345679999999866555 557899999987531 11100 00 112 6789
Q ss_pred EEccCCCEEEEEeC----------CccEEEEEccCCCcccccCCC----CCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 393 ALDVNGRRLLVTSG----------SVRAPIYQVRGHASGMRTLPH----GAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 393 ~~s~~g~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
+++++|+++++... .+.|..++..+. ....+... -..++++++ .+++++++...++.|.+++++
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~-~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGN-ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSC-EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCCCC-EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 99999987766544 466888876533 22222211 235667777 467777776678889888763
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.99 E-value=2e-07 Score=90.78 Aligned_cols=279 Identities=8% Similarity=0.027 Sum_probs=155.5
Q ss_pred EEEeCC-CCCEEEEEeCCC-----------cEEEEecCCCCCCCcccccc-CCCceEEEEEecCCCeEEEEEcC-CCcEE
Q 012699 152 CCRFSS-SGNNIASASVDG-----------TVRIWTYDSSTPASRNATIY-CGTEIMSLEWECKSDRLLLIGTA-DGGIK 217 (458)
Q Consensus 152 ~~~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-dg~i~ 217 (458)
++++.| +++.++.|+.+. .+.+||..+++......... ......++++. .++.+++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~-~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMD-GNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEEC-TTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCC-CCCCEEEeCCCCCCceE
Confidence 566777 888888887543 58899998876543221111 11222345565 67888888874 45899
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-----eecCCC
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-----LPLGED 292 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-----~~~~~~ 292 (458)
+||..+++....-..... ..-..++..+++++++.++...... ....+.+||..+.+.... ..+...
T Consensus 269 ~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~-------~~~~~e~yd~~t~~W~~~~~~~~~p~~~~ 340 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGV-------FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340 (656)
T ss_dssp EEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSS-------CCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred EecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCc-------ccccceEeCCCCCcceeCCCccccccccc
Confidence 999998765543222221 1123455667899998888421100 113789999987654332 011110
Q ss_pred CCcEEEEEEccCCCEEEEEecCC---------eEEEEeCCCCceeeeeeCCC---------CCeEEEEEcC-CCCEEEEe
Q 012699 293 PPAITSLCFNHNGKILAASAVDG---------MIHMFDMSAGLQITGWPAHD---------SAISSILFGP-DETSIFSL 353 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg---------~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~~~ 353 (458)
.. ...+..++..++.|+.+| .+..||..+.........+. ..-.++.|.. +++.++.|
T Consensus 341 ~~---~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~G 417 (656)
T 1k3i_A 341 DK---QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG 417 (656)
T ss_dssp CT---TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred cc---cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEe
Confidence 00 012234555555665554 46788887665433222111 1234455543 67788888
Q ss_pred cCCC-----------eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----------ccEE
Q 012699 354 GSDG-----------KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----------VRAP 411 (458)
Q Consensus 354 ~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----------~~i~ 411 (458)
+.++ .+.+||..+..-.... . ........-..++..|+|+++++|+.+ ..+.
T Consensus 418 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~----~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~ 491 (656)
T 1k3i_A 418 GSPDYQDSDATTNAHIITLGEPGTSPNTVFA--S----NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPE 491 (656)
T ss_dssp CBSSSSSSBCCCCEEEEECCSTTSCCEEEEC--T----TCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCE
T ss_pred CCCCCCCCCcCCcceEEEcCCCCCCCeeEEc--c----CCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceE
Confidence 7543 5777777654321110 0 011122223456677899999998854 4689
Q ss_pred EEEccCCCc--ccccCCCCCcEEEEEECCCCCeEEEecC
Q 012699 412 IYQVRGHAS--GMRTLPHGAAITTVDWHPTLPMFLTGSA 448 (458)
Q Consensus 412 i~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 448 (458)
+||..+..- +..............+.|++++++.||.
T Consensus 492 ~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 492 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 999876531 1111111122234556799999999885
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=1.6e-06 Score=74.22 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=134.9
Q ss_pred EEEEEcCCCcEEEEEcCCCcee-----eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 206 LLLIGTADGGIKAWNVDAKRVV-----CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
+|+.+.. +.|+.++++..... ..+... ...+..+++++++..++.+.... +.|..+++..
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~--~~~~~gi~~d~~~~~ly~~d~~~------------~~I~~~~~~g 67 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIP--AKVIIGLAFDCVDKVVYWTDISE------------PSIGRASLHG 67 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEE--EEEEEEEEEETTTTEEEEEETTT------------TEEEEEESSS
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCC--CCcEEEEEEecCCCEEEEEECCC------------CEEEEEecCC
Confidence 4444443 47888888765421 011111 13467899999777666555433 5999999976
Q ss_pred CceeEEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC---C
Q 012699 281 WKAMTVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS---D 356 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d 356 (458)
......+. ........++++|++..|+.+ ...+.|.++++..................++++|++..|+.+.. .
T Consensus 68 ~~~~~~~~--~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 68 GEPTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp CCCEEEEC--TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred CCcEEEEE--CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 55433332 222457899999976666554 44678999998743322222222246789999996655554443 4
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVD 435 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~ 435 (458)
+.|..+++......... . ........++++|++..|+++.. .++|..+++.+..... +.........++
T Consensus 146 ~~I~~~~~dg~~~~~~~-~--------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~-~~~~~~~P~gi~ 215 (267)
T 1npe_A 146 PKIETSHMDGTNRRILA-Q--------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK-VLEGLQYPFAVT 215 (267)
T ss_dssp CEEEEEETTSCCCEEEE-C--------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE-EEECCCSEEEEE
T ss_pred cEEEEEecCCCCcEEEE-E--------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE-EecCCCCceEEE
Confidence 68888887643221110 0 11235788999998877766664 5789999997653222 211223446676
Q ss_pred ECCCCCeEEEecCCCcEEEEeC
Q 012699 436 WHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 436 ~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.. .+.++++....+.|.+++.
T Consensus 216 ~d-~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 216 SY-GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EE-TTEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEeC
Confidence 64 3445555556678888875
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.98 E-value=4.6e-07 Score=74.42 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=130.2
Q ss_pred eeeeeeccCCC--CeEEEEeCCCCCEEEEEeCCC--cEEEEecCCCCCCCccccccCCCce--EEEEEecCCCeEEEEEc
Q 012699 138 DFLETFLGHTS--PISCCRFSSSGNNIASASVDG--TVRIWTYDSSTPASRNATIYCGTEI--MSLEWECKSDRLLLIGT 211 (458)
Q Consensus 138 ~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~ 211 (458)
+.++++ .|.. -...+.|++ +.++.+.+.+| .|+.+|+.+++...... ..... ..+++. ++.+....-
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~---l~~~~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE---VPPPYFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE---CCTTCCEEEEEEE--TTEEEEEES
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe---CCCCcceeEEEEe--CCEEEEEEe
Confidence 455566 4543 356899986 55666666654 89999999988654322 22222 334443 566666677
Q ss_pred CCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 212 ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 212 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
.++.+.+||.++.+.+.++.... .-..++ +++..++.+..+ +.|.++|..+.+....+....
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSdgs-------------~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSDGT-------------AVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEECSS-------------SEEEEECTTTCCEEEEEECEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEECCC-------------CeEEEEeCCCCeEEEEEEEcc
Confidence 78999999999999998887653 223443 456655555444 499999999999988887643
Q ss_pred CC---CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCC-------------CCCeEEEEEcCCCCEEEEecC
Q 012699 292 DP---PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAH-------------DSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 292 ~~---~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~ 355 (458)
+. ..++.+.+. +|+..+..-.+..|.+.|..+++.+..+... ....+.|+++|+++.|+..+.
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 32 245667765 5655544445779999999999988776521 235689999998776665553
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.96 E-value=3.9e-07 Score=86.68 Aligned_cols=269 Identities=11% Similarity=0.084 Sum_probs=157.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEcC------CCcEEEEEcCCCceeee
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGTA------DGGIKAWNVDAKRVVCD 229 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~ 229 (458)
+..++.++.|+.+..+|..+++.........+ ...+.+ ... .++ .+++++. ++.|..+|.++++.+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 44677778889999999888876532221110 001111 011 134 4555554 78999999999998876
Q ss_pred ccCCCCCC-----------------------------------ce-eeeeecCCCCeEEEeecccCC-------CCccee
Q 012699 230 LNTTDAFP-----------------------------------SV-LDLKCSPVEPIFVSAAASRRY-------GSSNIY 266 (458)
Q Consensus 230 ~~~~~~~~-----------------------------------~v-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 266 (458)
+....... .+ ..+++.+....++.+..+... +....
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y- 270 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW- 270 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT-
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee-
Confidence 65432110 00 124555655555554432100 00000
Q ss_pred eccceeEEEEECCCCceeEEeecCCCC-------CcEEEEEEccCCC---EEEEEecCCeEEEEeCCCCceeeeeeCCC-
Q 012699 267 SWGFASLTVWNMKTWKAMTVLPLGEDP-------PAITSLCFNHNGK---ILAASAVDGMIHMFDMSAGLQITGWPAHD- 335 (458)
Q Consensus 267 ~~~~g~i~i~d~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~v~d~~~~~~~~~~~~~~- 335 (458)
.+.|..+|.++++.+..++...+. ....-+...++|+ .++.++.+|.++++|..+++.+...+...
T Consensus 271 ---~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 271 ---TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp ---TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ---EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 137999999999999888764331 1111122334674 57788899999999999998877654321
Q ss_pred ------------CCe--------------------------EEEEEcCCCCEEEEec-----------------------
Q 012699 336 ------------SAI--------------------------SSILFGPDETSIFSLG----------------------- 354 (458)
Q Consensus 336 ------------~~v--------------------------~~~~~~~~~~~l~~~~----------------------- 354 (458)
.++ ..++++|+...++...
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 111 2357788777776643
Q ss_pred --------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 355 --------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 355 --------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
.+|.+..||+.+++.. |..... ..+....+...+..+++++.++.++.+|..+++.
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~-W~~~~~---------~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAK-WTKWEK---------FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEE-EEEEES---------SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEE-EEecCC---------CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 3578999999876543 332211 1112222334567788899999999999999887
Q ss_pred ccccCC-CCCcEEEEEECCCCCeEE
Q 012699 421 GMRTLP-HGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 421 ~~~~~~-h~~~v~~~~~~~~~~~l~ 444 (458)
+.++.. ....-.-+.+..+|++++
T Consensus 498 lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 498 LWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEeCCCCcEeeeEEEEECCEEEE
Confidence 766552 111112234567777444
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.95 E-value=1.4e-06 Score=76.21 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=138.8
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.....++|+ ++++++++-..++.|..||.... ....+... ..+..+++.++++++++...... .
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~---~~p~gia~~~dG~l~vad~~~~~-----------~ 95 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGN-QQIHATVE---GKVSGLAFTSNGDLVATGWNADS-----------I 95 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCC-EEEEEECS---SEEEEEEECTTSCEEEEEECTTS-----------C
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC---CCceeEEEcCCCcEEEEeccCCc-----------c
Confidence 456788998 46777777778899999998764 33323222 46888999999996665533210 2
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeee---------eCCCCCeEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGW---------PAHDSAISSI 341 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~---------~~~~~~v~~~ 341 (458)
.|..+|..+++......... ......++..+++..+++-..++.|+++|..+++. +... ...-...+.+
T Consensus 96 ~v~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 96 PVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred eEEEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 47777877777654443322 22345566666554445444588999999875421 1100 0111234555
Q ss_pred EEcCCCCEEEE-ecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc
Q 012699 342 LFGPDETSIFS-LGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 342 ~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~ 420 (458)
+|+++.|+. -...+.|..+++......... ..+. .......++++++|+++++....+.|.+++..+...
T Consensus 175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~---~~~~----~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~ 245 (306)
T 2p4o_A 175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP---EIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT 245 (306)
T ss_dssp --EEETTEEEEEETTTTEEEEEEBCTTSCBCCC---EEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE
T ss_pred --CcCCCEEEEEeCCCCEEEEEEeCCCCCCCcc---EEEe----ccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEE
Confidence 788876554 455789999998742211000 0000 012356799999998877777788999999764321
Q ss_pred cc-ccCCCCCcEEEEEEC---CCCCeEEEec
Q 012699 421 GM-RTLPHGAAITTVDWH---PTLPMFLTGS 447 (458)
Q Consensus 421 ~~-~~~~h~~~v~~~~~~---~~~~~l~s~~ 447 (458)
.. ........+++++|. |+++.|+.++
T Consensus 246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 11 122223568999998 8877555543
No 259
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.95 E-value=2.4e-07 Score=82.07 Aligned_cols=191 Identities=15% Similarity=0.069 Sum_probs=123.2
Q ss_pred cCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 145 GHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 145 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.+...+.++...+++. |+.++.++.+..+|.. ++..... ......+.++... .++. +..++ +.|..+| .++
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~--~~~~~~~~~~~~d-~~g~-l~v~t--~~l~~~d-~~g 204 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF--KTNDAITSAASIG-KDGT-IYFGS--DKVYAIN-PDG 204 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE--ECSSCCCSCCEEC-TTCC-EEEES--SSEEEEC-TTS
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE--ecCCCceeeeEEc-CCCE-EEEEe--CEEEEEC-CCC
Confidence 3444566677777776 5567778999999987 5433211 1123345555554 4444 55555 7899999 777
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
+......... ..+.++...+++.+.+... + +.+..+|. +++....+.... ..+..+.+.++
T Consensus 205 ~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~-~-------------~gl~~~~~-~g~~~~~~~~~~--~~~~~~~~~~~ 265 (330)
T 3hxj_A 205 TEKWNFYAGY--WTVTRPAISEDGTIYVTSL-D-------------GHLYAINP-DGTEKWRFKTGK--RIESSPVIGNT 265 (330)
T ss_dssp CEEEEECCSS--CCCSCCEECTTSCEEEEET-T-------------TEEEEECT-TSCEEEEEECSS--CCCSCCEECTT
T ss_pred cEEEEEccCC--cceeceEECCCCeEEEEcC-C-------------CeEEEECC-CCCEeEEeeCCC--CccccceEcCC
Confidence 7665555433 4577888888876655443 3 37777774 455555554322 22334555655
Q ss_pred CCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 305 GKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 305 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
+ .|.+++.+|.|..+|. +++.+..+......+.++...+++. |..++.+|.+++...+.
T Consensus 266 g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 266 D-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp S-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred C-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 6 5677788889999996 6777777766666677788877875 66688999999887764
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=3.8e-07 Score=86.78 Aligned_cols=284 Identities=8% Similarity=0.023 Sum_probs=161.6
Q ss_pred CEEEEEeC-CCcEEEEec-CCCCCCCccccccCC---------CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 160 NNIASASV-DGTVRIWTY-DSSTPASRNATIYCG---------TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 160 ~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
..++.++. ++.|.-+|. .+++.+......... .....++.. +..++.++.|+.+..+|..+|+.+.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 35555555 677777777 666654221111000 000112222 4567888889999999999999887
Q ss_pred eccCCCCCC--ceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC------------
Q 012699 229 DLNTTDAFP--SVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------------ 293 (458)
Q Consensus 229 ~~~~~~~~~--~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------------ 293 (458)
......... .+.. .... ++ .++.+...... ..+|.|..+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~-------~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~ 210 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAEL-------GVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA 210 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGG-------TCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCcc-------CCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence 765432100 1111 1111 33 33333321000 01269999999999998877643211
Q ss_pred ------------------------CcEEEEEEccCCCEEEEEecC----------------CeEEEEeCCCCceeeeeeC
Q 012699 294 ------------------------PAITSLCFNHNGKILAASAVD----------------GMIHMFDMSAGLQITGWPA 333 (458)
Q Consensus 294 ------------------------~~i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~~~~~ 333 (458)
.....++++++...++.++.+ +.|..+|.++++.+..++.
T Consensus 211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence 000235677776777776642 3699999999998877753
Q ss_pred C--C--------CCeEEEEEcCCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCccc----------CC--------
Q 012699 334 H--D--------SAISSILFGPDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC----------DP-------- 382 (458)
Q Consensus 334 ~--~--------~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~-------- 382 (458)
. . .++. +...++|+ .++.++.+|.+.++|..+++..-......... .+
T Consensus 291 ~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 369 (571)
T 2ad6_A 291 TPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFAT 369 (571)
T ss_dssp STTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCC
T ss_pred CCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCC
Confidence 2 1 2221 22234674 57788899999999998875543322111000 00
Q ss_pred -CCCC-----------CceeEEEEccCCCEEEEEe-------------------------------------CCccEEEE
Q 012699 383 -ESSK-----------SCRHEMALDVNGRRLLVTS-------------------------------------GSVRAPIY 413 (458)
Q Consensus 383 -~~~~-----------~~v~~~~~s~~g~~l~~~~-------------------------------------~~~~i~i~ 413 (458)
.... ..-..++++|+..++++.. .++.++.|
T Consensus 370 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~ 449 (571)
T 2ad6_A 370 RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAF 449 (571)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEE
T ss_pred CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEE
Confidence 0000 0013478899888887764 24788899
Q ss_pred EccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 414 QVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 414 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
|+.+++...+... ...+.+..+...+.+++.++.||.|+.||.
T Consensus 450 D~~tG~~~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 450 DLTTGKAKWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ECCCCCEEEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 9888766554431 122222222334566777899999999985
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.92 E-value=1.6e-05 Score=70.67 Aligned_cols=242 Identities=9% Similarity=-0.035 Sum_probs=146.6
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCce
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRV 226 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 226 (458)
....+|.+..++. +|+.+. ...|+..++...... ........+..++|++.++.++++-...+.|..+++.....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~---~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeE---EeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 3445677766644 444443 456887787654432 12233455789999977777777777788999999887654
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
...+.... .....+++.+.+..++.+.... +.|.+.++........+. ........++++|.+.
T Consensus 108 ~~~~~~~~--~~p~glavd~~~g~ly~~d~~~------------~~I~~~~~dG~~~~~l~~--~~l~~P~~iavdp~~g 171 (349)
T 3v64_C 108 EEVVSTGL--ESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEG 171 (349)
T ss_dssp EEEECSSC--SCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--TTCSCEEEEEEETTTT
T ss_pred eEEEeCCC--CCccEEEEecCCCeEEEEcCCC------------CeEEEEcCCCCceEEEEe--CCCCCcceEEEecCcC
Confidence 33332221 3457788887666555444332 489999987544333322 2334578999999766
Q ss_pred EEEEEec-C-CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 307 ILAASAV-D-GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 307 ~l~~~~~-d-g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
.|+.... . +.|..+++............-...+.|+++|++..|+.+ +..+.|..+|+..........
T Consensus 172 ~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~--------- 242 (349)
T 3v64_C 172 TIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS--------- 242 (349)
T ss_dssp EEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---------
T ss_pred eEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---------
Confidence 6655443 4 789999886433222222233457899999866665554 457789999987533221110
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
.....+..+++ ..+.++.+-...+.|..++..+++
T Consensus 243 ~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 243 QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 11234677888 344444444456788888754443
No 262
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.91 E-value=6.8e-06 Score=68.53 Aligned_cols=206 Identities=11% Similarity=0.120 Sum_probs=131.3
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..+..++|+|.++.++++...++.|...|.. ++....+.... ......+++.+++.++++...+ +
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~-------------~ 91 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERD-------------Y 91 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTT-------------T
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCC-------------C
Confidence 5689999997667777778889999999998 77777765432 2467788998888766654333 3
Q ss_pred eEEEEECCCCce---eEEeec----CCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCC---Cceeeeee-------CC
Q 012699 272 SLTVWNMKTWKA---MTVLPL----GEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSA---GLQITGWP-------AH 334 (458)
Q Consensus 272 ~i~i~d~~~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~-------~~ 334 (458)
.+.++++..... .....+ .........++|+|.++.|+++.......+|.+.. ...+..+. .+
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~ 171 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT 171 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc
Confidence 788887765432 233322 12344578999999988787777655555555431 11122211 12
Q ss_pred CCCeEEEEEcCCC-CEEEEecCCCeEEEEeccCCCeeEEeecCC-cccCCCCCCCceeEEEEccCCCEEEEEeCCccEEE
Q 012699 335 DSAISSILFGPDE-TSIFSLGSDGKIIEWSLQNQGQVLWTRNCS-RFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPI 412 (458)
Q Consensus 335 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i 412 (458)
...+.+++++|.. .+++.......+..+|.... +....... ........-.....++|.++|+ |++.++.+.++.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~ 248 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYR 248 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEE
Confidence 3457899999954 45566666788999997743 33222222 1111112234568899999997 555688787777
Q ss_pred EEc
Q 012699 413 YQV 415 (458)
Q Consensus 413 ~~~ 415 (458)
+..
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 754
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.90 E-value=1.7e-05 Score=71.60 Aligned_cols=242 Identities=9% Similarity=-0.036 Sum_probs=147.9
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.-.|.+..+++ +|+.+. ...|+..++.+.... ........+..++|++.++.++++-...+.|..+++.......
T Consensus 78 ~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~---~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCE---EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCccccc-eeEeec-CccceeeccCCCcEE---EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 34466666633 444443 457888888765432 1223345678999997677777777778899999998765433
Q ss_pred eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEE
Q 012699 229 DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKIL 308 (458)
Q Consensus 229 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 308 (458)
.+.... .....+++.+.+..++.+.... +.|.+.++........+. ........++++|.+..|
T Consensus 153 ~~~~~~--~~p~glavd~~~g~lY~~d~~~------------~~I~~~~~dg~~~~~l~~--~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 153 VVSTGL--ESPGGLAVDWVHDKLYWTDSGT------------SRIEVANLDGAHRKVLLW--QSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp EECSSC--SCCCCEEEETTTTEEEEEETTT------------TEEEECBTTSCSCEEEEC--SSCSCEEEEEEETTTTEE
T ss_pred EEeCCC--CCccEEEEEeCCCeEEEEcCCC------------CeEEEEeCCCCceEEeec--CCCCCCcEEEEEcCCCeE
Confidence 332221 3456788887666555444332 488888887544333332 233457899999977766
Q ss_pred EEEec-C-CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCC
Q 012699 309 AASAV-D-GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESS 385 (458)
Q Consensus 309 ~~~~~-d-g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 385 (458)
+.... . +.|..+++............-.....|+++|++..|+.+ +..+.|..+|+.......... ..
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---------~~ 287 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---------QG 287 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---------SS
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---------CC
Confidence 65543 3 689999887443332223334457899999866655544 457789999987533221111 11
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG 421 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~ 421 (458)
...+..+++ ..+.++.+-...+.|..++..++...
T Consensus 288 ~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 288 LPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 234677888 44445555556788888885554433
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.87 E-value=2.7e-05 Score=68.19 Aligned_cols=230 Identities=11% Similarity=0.011 Sum_probs=137.8
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----CceeeeccCCCCC
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----KRVVCDLNTTDAF 236 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~~ 236 (458)
+|+.+. ...|+..|+.+.+... .......+..++|++.++.++++-..++.|..+++.. ......+.. ..
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~---~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--~~ 76 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DI 76 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEE---EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--SC
T ss_pred EEEEEC-CCeEEEEECCCcceEe---hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--CC
Confidence 344443 3568888887765432 2334456789999966677777777789999999876 222222211 11
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC--
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-- 314 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 314 (458)
.....+++.+.+..++.+.... +.|.++++........+. ........++++|.+..|+.....
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~------------~~I~~~~~~g~~~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~ 142 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTP 142 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTTEEEEEECSSS
T ss_pred CCcCEEEEeecCCeEEEEECCC------------CEEEEEeCCCCceEEEEE--CCCCCcceEEeCCCCCEEEEEccCCC
Confidence 3457888887655554443322 489999987644433332 222457899999977666655543
Q ss_pred CeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEE
Q 012699 315 GMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEM 392 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 392 (458)
+.|..+++.. .....+ ...-.....++++|++..|+.+ +..+.|..+|+.......... ..........+
T Consensus 143 ~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~-------~~~~~~~P~gi 214 (316)
T 1ijq_A 143 AKIKKGGLNG-VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSL 214 (316)
T ss_dssp CEEEEEETTS-CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-------CTTTTSSEEEE
T ss_pred CeEEEEcCCC-CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-------cCCccCCcEEE
Confidence 6899888763 333333 2233467899999877666555 456789999987432221111 01122345677
Q ss_pred EEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 393 ALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 393 ~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
++. .+.++.+-...++|..++..+++
T Consensus 215 av~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 215 AVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred EEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 774 34444455556788888875543
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.84 E-value=1.2e-05 Score=70.29 Aligned_cols=239 Identities=9% Similarity=0.034 Sum_probs=138.6
Q ss_pred eeeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-C-cE
Q 012699 139 FLETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-G-GI 216 (458)
Q Consensus 139 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g-~i 216 (458)
.+..+... .....++|+++++++++-..++.|..||..+.. . ........+..+++. ++++++++.... + .|
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~---~~~~~~~~p~gia~~-~dG~l~vad~~~~~~~v 97 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q---IHATVEGKVSGLAFT-SNGDLVATGWNADSIPV 97 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E---EEEECSSEEEEEEEC-TTSCEEEEEECTTSCEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E---EEEeCCCCceeEEEc-CCCcEEEEeccCCcceE
Confidence 44445332 457789999999977777788999999876532 1 122234568889998 566655554332 2 47
Q ss_pred EEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEE-e-------e
Q 012699 217 KAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTV-L-------P 288 (458)
Q Consensus 217 ~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~-~-------~ 288 (458)
..+|..+++......... ......++..+.+..+++.... |.|..+|...++.... . .
T Consensus 98 ~~~d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~-------------g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADSYR-------------GAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp EEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEETTT-------------TEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred EEEcCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEECCC-------------CeEEEEeCCCCcEeEEEECCcccccc
Confidence 777777776543222211 1223344444444333332222 5888888765421111 0 0
Q ss_pred cCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 289 LGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
........+.+ +|++++|+++. ..+.|.+|++.. ++. ...+.. ......+++.++|+++++....+.|.++|.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 01111234555 78887776554 467899999874 321 111111 134567899999987777777889999987
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEc---cCCCEEEEEeCCc
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALD---VNGRRLLVTSGSV 408 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~~~ 408 (458)
. ++ ....... ......+.+++|. |+++.|++++..+
T Consensus 241 ~-G~-~~~~~~~------~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 241 D-RS-TTIIAQA------EQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp T-CC-EEEEECG------GGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred C-CC-EEEEeec------ccccCCceEEEEecccCCCCEEEEECCCC
Confidence 5 22 2111110 0112457899998 8988888776543
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.84 E-value=1.2e-06 Score=83.22 Aligned_cols=288 Identities=10% Similarity=0.019 Sum_probs=160.3
Q ss_pred CCEEEEEeC-CCcEEEEec-CCCCCCCccccccC---------CCceEEEEEecCCC---eEEEEEcCCCcEEEEEcCCC
Q 012699 159 GNNIASASV-DGTVRIWTY-DSSTPASRNATIYC---------GTEIMSLEWECKSD---RLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 159 ~~~l~s~~~-dg~v~iwd~-~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~ 224 (458)
+..|+.++. ++.|.-+|. .+++.+-....... ......+++.|.++ .+++.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 335555665 677777777 66654322111100 00012234432122 23788889999999999999
Q ss_pred ceeeeccCCCCC--Cceee-eeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCC-------
Q 012699 225 RVVCDLNTTDAF--PSVLD-LKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPP------- 294 (458)
Q Consensus 225 ~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~------- 294 (458)
+.+......... ..+.. ..+ .++ .++.+..... ...+|.|+.+|.++++.+..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e-------~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~ 212 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAE-------LGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASD 212 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGG-------GTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTT
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccc-------cCCCCeEEEEECCCCcEEEEEcCCCCccccccccc
Confidence 988765543210 01111 111 133 3333332100 0012699999999999988776432110
Q ss_pred -----------------------------cEEEEEEccCCCEEEEEecC----------------CeEEEEeCCCCceee
Q 012699 295 -----------------------------AITSLCFNHNGKILAASAVD----------------GMIHMFDMSAGLQIT 329 (458)
Q Consensus 295 -----------------------------~i~~~~~~~~~~~l~~~~~d----------------g~i~v~d~~~~~~~~ 329 (458)
.-..+++.++..+++.++.+ +.|..+|.++++.+.
T Consensus 213 ~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W 292 (599)
T 1w6s_A 213 FNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKF 292 (599)
T ss_dssp TTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEE
T ss_pred cccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceee
Confidence 00135667777788887765 389999999999887
Q ss_pred eeeCCCC----------CeEEEEEc-CCC---CEEEEecCCCeEEEEeccCCCeeEEeecCCcc-----cC-CC------
Q 012699 330 GWPAHDS----------AISSILFG-PDE---TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF-----CD-PE------ 383 (458)
Q Consensus 330 ~~~~~~~----------~v~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~-~~------ 383 (458)
.++.... ++. +... .+| +.++.++.+|.+.++|..+++.+......... .. ..
T Consensus 293 ~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~ 371 (599)
T 1w6s_A 293 GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRD 371 (599)
T ss_dssp EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEEC
T ss_pred EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeec
Confidence 7764321 221 2222 467 46778899999999999886654332211100 00 00
Q ss_pred -------C-----------CCCceeEEEEccCCCEEEEEe---------------------------------------C
Q 012699 384 -------S-----------SKSCRHEMALDVNGRRLLVTS---------------------------------------G 406 (458)
Q Consensus 384 -------~-----------~~~~v~~~~~s~~g~~l~~~~---------------------------------------~ 406 (458)
. ....-..++++|+.+++++.. .
T Consensus 372 ~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~ 451 (599)
T 1w6s_A 372 PEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451 (599)
T ss_dssp GGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBC
T ss_pred cccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCC
Confidence 0 001113467888777766532 2
Q ss_pred CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 407 SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 407 ~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
.|.+..||+.+++...+.. +..+..+-.....+.+++.++.||.++.||.
T Consensus 452 ~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~ 501 (599)
T 1w6s_A 452 LGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDS 501 (599)
T ss_dssp CEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred cCeEEEEECCCCCEEeEec-CCCCccCcceEecCCEEEEECCCCeEEEEEC
Confidence 3677778887776554432 1111111112234567777899999999885
No 267
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.83 E-value=1.6e-06 Score=82.53 Aligned_cols=264 Identities=13% Similarity=0.093 Sum_probs=153.6
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccC--CCceEE-EEEecCCCeEEEEEc------CCCcEEEEEcCCCceeeecc
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYC--GTEIMS-LEWECKSDRLLLIGT------ADGGIKAWNVDAKRVVCDLN 231 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~v~~-~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~ 231 (458)
+|+.++.|+.+.-+|..+++.......... ...+.+ -.. .++ .+++++ .+|.|+.+|.++|+.+..+.
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v--~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE--ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 377778888888888888876532221110 001111 011 134 445544 37999999999999887665
Q ss_pred CCCCCC-----------------------------------ce-eeeeecCCCCeEEEeecccC-------CCCcceeec
Q 012699 232 TTDAFP-----------------------------------SV-LDLKCSPVEPIFVSAAASRR-------YGSSNIYSW 268 (458)
Q Consensus 232 ~~~~~~-----------------------------------~v-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 268 (458)
...... .+ ..+++.+....++.+..+.. .+....
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y--- 276 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW--- 276 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT---
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc---
Confidence 432110 00 12445566666665554320 000000
Q ss_pred cceeEEEEECCCCceeEEeecCCCCC--------cEEEEEEc-cCC---CEEEEEecCCeEEEEeCCCCceeeeeeCCC-
Q 012699 269 GFASLTVWNMKTWKAMTVLPLGEDPP--------AITSLCFN-HNG---KILAASAVDGMIHMFDMSAGLQITGWPAHD- 335 (458)
Q Consensus 269 ~~g~i~i~d~~~~~~~~~~~~~~~~~--------~i~~~~~~-~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~- 335 (458)
.+.|..+|.++++.+..++...|.. ++. +... .+| +.++.++.+|.++++|.++++.+...+...
T Consensus 277 -~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~ 354 (599)
T 1w6s_A 277 -TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT 354 (599)
T ss_dssp -SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred -cceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence 1489999999999998887655421 121 2222 467 467778999999999999999876654211
Q ss_pred ------------CCe--------------------------EEEEEcCCCCEEEEe------------------------
Q 012699 336 ------------SAI--------------------------SSILFGPDETSIFSL------------------------ 353 (458)
Q Consensus 336 ------------~~v--------------------------~~~~~~~~~~~l~~~------------------------ 353 (458)
.++ ..++++|+..++++.
T Consensus 355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 434 (599)
T 1w6s_A 355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA 434 (599)
T ss_dssp CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence 111 235666665555442
Q ss_pred ---------c------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 354 ---------G------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 354 ---------~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
+ .+|.+.-||+.+++.. |...... ....-.+...+.++++++.|+.++.+|.+++
T Consensus 435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-W~~~~~~---------~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG 504 (599)
T 1w6s_A 435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-WEKMERF---------AVWGGTMATAGDLVFYGTLDGYLKARDSDTG 504 (599)
T ss_dssp EEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-EEEEESS---------CCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cceeccCCcCCcccCCCcCeEEEEECCCCCEE-eEecCCC---------CccCcceEecCCEEEEECCCCeEEEEECCCC
Confidence 1 3477888888876543 3322110 0111112336778888999999999999999
Q ss_pred CcccccCC-CCCcEEEEEECCCCCe
Q 012699 419 ASGMRTLP-HGAAITTVDWHPTLPM 442 (458)
Q Consensus 419 ~~~~~~~~-h~~~v~~~~~~~~~~~ 442 (458)
+.+.++.- ......-+.|..+|+.
T Consensus 505 ~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 505 DLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CEEEEeeCCCCcEeccEEEEeCCEE
Confidence 87766542 1111222455677873
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.82 E-value=5.5e-05 Score=68.54 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=142.9
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc----eeeeccCCCCC
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR----VVCDLNTTDAF 236 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~ 236 (458)
+|+.+. ...|+..++....... .......+..++|++.++.++++-...+.|+.+++.... ....+.. ..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~---~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~--~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS--SC
T ss_pred eeEEec-cceeEEEccCCcceeE---eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC--CC
Confidence 444443 4678888887654332 233456788999996677777777778899999987522 2222221 12
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--C
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--D 314 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d 314 (458)
.....+++.+.+..|+.+.... +.|.+.++........+. ........++++|.+.+|+.... .
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~------------~~I~~~~~~g~~~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~ 224 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTP 224 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTT------------TEEEEECTTTCSEEEEEE--CSSCCEEEEEEETTTTEEEEEECSSS
T ss_pred CCcccEEEEecCCceEEEECCC------------CeEEEEeCCCCceEEEEe--CCCCCcceEEEecccCeEEEEeCCCC
Confidence 4577888988655555444332 489999988655444443 22345789999997767766553 3
Q ss_pred CeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 315 GMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 315 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
+.|...++............-.....|+++|++..|+.+ +..+.|..+|+.......... ..........++
T Consensus 225 ~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~l~~P~gl~ 297 (400)
T 3p5b_L 225 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLA 297 (400)
T ss_dssp CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-------CSSTTSSEEEEE
T ss_pred CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-------CCCCCCCCEEEE
Confidence 689999987543333333333567899999877766655 446789999987543322211 111123355666
Q ss_pred EccCCCEEEEEeCCccEEEEEccCCCcccccC
Q 012699 394 LDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 394 ~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~ 425 (458)
+. .+.++.+-...+.|..++..+++....+.
T Consensus 298 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 298 VF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred Ee-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 62 33444444556788888866654443333
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=4.3e-06 Score=79.65 Aligned_cols=271 Identities=11% Similarity=0.131 Sum_probs=155.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCCCCCcccccc-------CCCceEEEEEe-cCCCe-EEEEEc------CCCcEEEEEcCC
Q 012699 159 GNNIASASVDGTVRIWTYDSSTPASRNATIY-------CGTEIMSLEWE-CKSDR-LLLIGT------ADGGIKAWNVDA 223 (458)
Q Consensus 159 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~-~~~~~-~l~~~~------~dg~i~~wd~~~ 223 (458)
+..++.++.|+.+.-+|..+++......... ...++ + .. ..+++ .+++++ .+|.|..+|..+
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~--v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPT--I-VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCE--E-EECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCE--E-eCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 3467777788889888988887653222111 01111 1 11 01222 566654 378999999999
Q ss_pred CceeeeccCCCCC---------------------------------------CceeeeeecCCCCeEEEeecccCC-CCc
Q 012699 224 KRVVCDLNTTDAF---------------------------------------PSVLDLKCSPVEPIFVSAAASRRY-GSS 263 (458)
Q Consensus 224 ~~~~~~~~~~~~~---------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~-~~~ 263 (458)
|+.+......... ..-..+++.|....++.+..+... ...
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 9987654432100 000124555666666655543110 000
Q ss_pred c----------eeeccceeEEEEECCCCceeEEeecCCCC--------CcEEEEEEc-cCCC---EEEEEecCCeEEEEe
Q 012699 264 N----------IYSWGFASLTVWNMKTWKAMTVLPLGEDP--------PAITSLCFN-HNGK---ILAASAVDGMIHMFD 321 (458)
Q Consensus 264 ~----------~~~~~~g~i~i~d~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~dg~i~v~d 321 (458)
. +...-.+.|..+|.++++.+..++...|. .++. +... .+|+ .++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence 0 00000158999999999999988764432 1221 2222 4674 788899999999999
Q ss_pred CCCCceeeeeeCCCC-------------Ce--------------------------------EEEEEcCCCCEEEEec--
Q 012699 322 MSAGLQITGWPAHDS-------------AI--------------------------------SSILFGPDETSIFSLG-- 354 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~-------------~v--------------------------------~~~~~~~~~~~l~~~~-- 354 (458)
.++++.+..+..... ++ ..++++|+...+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 999988766543320 00 1345666555554432
Q ss_pred -------------------------------CCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699 355 -------------------------------SDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV 403 (458)
Q Consensus 355 -------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 403 (458)
.+|.|..||+.+++.. |...... ....-.+...+.++++
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~-W~~~~~~---------~~~~g~~~tagglvf~ 502 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVV-WEHKEHL---------PLWAGVLATAGNLVFT 502 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEE-EEEEESS---------CCCSCCEEETTTEEEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEE-EEecCCC---------CCcccceEeCCCEEEE
Confidence 3678999999886554 3322110 1111122235678888
Q ss_pred EeCCccEEEEEccCCCcccccCCCCCc-EEEEEECCCCCeE
Q 012699 404 TSGSVRAPIYQVRGHASGMRTLPHGAA-ITTVDWHPTLPMF 443 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l 443 (458)
++.|+.++.+|.++++.+.++...... ..-+.|..+|+..
T Consensus 503 g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 503 GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 999999999999999887766532221 1225666788733
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.80 E-value=9.9e-06 Score=77.17 Aligned_cols=285 Identities=12% Similarity=0.010 Sum_probs=157.6
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCc-------eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCC
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTE-------IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTT 233 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 233 (458)
.++.++.++.|.-+|..+++.+-.......... ...++.. +..++.++.++.|..+|.++|+.+......
T Consensus 70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 444444433477777777765432211110000 0112222 456778888999999999999988776543
Q ss_pred CCCC--cee-eeeecC---CCC-eEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC-------------
Q 012699 234 DAFP--SVL-DLKCSP---VEP-IFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP------------- 293 (458)
Q Consensus 234 ~~~~--~v~-~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~------------- 293 (458)
.... .+. ...+.. +++ .++.+..... ...+|.|.-+|.++++.+.........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e-------~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g 219 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE-------FGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTG 219 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG-------GCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccc-------cCCCCEEEEEECCCCCEEeecCCCccccccccCccccccc
Confidence 3110 011 111111 122 3444332100 001369999999999988766432100
Q ss_pred --------------------------CcEEEEEEccCCCEEEEEec--------------------C----CeEEEEeCC
Q 012699 294 --------------------------PAITSLCFNHNGKILAASAV--------------------D----GMIHMFDMS 323 (458)
Q Consensus 294 --------------------------~~i~~~~~~~~~~~l~~~~~--------------------d----g~i~v~d~~ 323 (458)
..-..++++|+..+++++.. | +.|..+|..
T Consensus 220 ~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~ 299 (582)
T 1flg_A 220 DVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS 299 (582)
T ss_dssp CTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT
T ss_pred ccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC
Confidence 00023567777778877763 2 589999999
Q ss_pred CCceeeeeeC--CC--------CCeEEEEEc-CCCC---EEEEecCCCeEEEEeccCCCeeEEeecCCcc----------
Q 012699 324 AGLQITGWPA--HD--------SAISSILFG-PDET---SIFSLGSDGKIIEWSLQNQGQVLWTRNCSRF---------- 379 (458)
Q Consensus 324 ~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------- 379 (458)
+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+.........
T Consensus 300 TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~ 378 (582)
T 1flg_A 300 SGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT 378 (582)
T ss_dssp TCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT
T ss_pred CCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccC
Confidence 9999887753 32 1221 2221 4674 7888999999999999886654332221100
Q ss_pred --------cCCC-------CCC-----------CceeEEEEccCCCEEEEEe----------------------------
Q 012699 380 --------CDPE-------SSK-----------SCRHEMALDVNGRRLLVTS---------------------------- 405 (458)
Q Consensus 380 --------~~~~-------~~~-----------~~v~~~~~s~~g~~l~~~~---------------------------- 405 (458)
..+. ... ..-..++++|+..++++..
T Consensus 379 g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 458 (582)
T 1flg_A 379 GRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIK 458 (582)
T ss_dssp CCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred CCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeec
Confidence 0000 000 0012467788776666543
Q ss_pred -----CCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 406 -----GSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 406 -----~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
..|.+..||+.+++...+.... .++..-.....+.+++.++.||.++.||.
T Consensus 459 p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 459 RMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp ESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred CCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 2577889999888765544321 12211111224567778999999999985
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.72 E-value=5.1e-05 Score=67.41 Aligned_cols=216 Identities=11% Similarity=0.039 Sum_probs=134.3
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
..|+..++............ ..+..++|++.+..++...... +.|..+++........+. ...
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~------------~~I~r~~~~g~~~~~~~~--~~~ 115 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTL------------DRILRANLNGSNVEEVVS--TGL 115 (349)
T ss_dssp SCEEEECTTSCCEEEEECSC---SCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSC
T ss_pred cceEEEeCCCCeeEEeecCC---CceEEEEEeccccEEEEEeccC------------CceEEEecCCCCceEEEe--CCC
Confidence 45888888765544333322 4578899998777666555433 589999988765444332 122
Q ss_pred CcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCC-CeEEEEeccCCCee
Q 012699 294 PAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSD-GKIIEWSLQNQGQV 370 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~iwd~~~~~~~ 370 (458)
.....+++++.+..| ++-...+.|.+.++........+...-.....++++|.+..|+.. ... +.|..+++......
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 195 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR 195 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE
Confidence 335788999865555 444556789999987544333333334567899999965555544 344 77888887643221
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCC
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSAD 449 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 449 (458)
.. ..........++++|++..|+.+.. .+.|..+++.+................+++ ..+.++++-...
T Consensus 196 ~~---------~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 265 (349)
T 3v64_C 196 II---------ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 265 (349)
T ss_dssp ES---------CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred EE---------EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCC
Confidence 10 0112345789999998877777654 578999998875433222233456678888 345555555556
Q ss_pred CcEEEEe
Q 012699 450 HSVQVMS 456 (458)
Q Consensus 450 g~v~iw~ 456 (458)
+.|...+
T Consensus 266 ~~V~~~~ 272 (349)
T 3v64_C 266 KSINSAN 272 (349)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 6676655
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.72 E-value=3.1e-05 Score=69.88 Aligned_cols=223 Identities=11% Similarity=0.057 Sum_probs=138.8
Q ss_pred EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE
Q 012699 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT 285 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~ 285 (458)
+|+.+. ...|+.+++............ ..+..++|.+.+..++...... +.|..+++.......
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~---~~~~gl~~d~~~~~ly~~D~~~------------~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTL------------DRILRANLNGSNVEE 152 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSC---SCEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCCEEE
T ss_pred eeEeec-CccceeeccCCCcEEEEecCC---CccEEEEEecCCCeEEEEeCCC------------CcEEEEecCCCCcEE
Confidence 344433 356888888776554433322 4578899998777666554433 589999988765444
Q ss_pred EeecCCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec-CC-CeEEEE
Q 012699 286 VLPLGEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG-SD-GKIIEW 362 (458)
Q Consensus 286 ~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~iw 362 (458)
.+. ........+++++.+..| ++-...+.|.+.++........+...-.....+++.|.+..|+... .. +.|..+
T Consensus 153 ~~~--~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 153 VVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EEC--SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEe--CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 332 112235678898865555 4445567899999875443333333345678999999666655544 34 678888
Q ss_pred eccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCC
Q 012699 363 SLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLP 441 (458)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 441 (458)
++.......... ........++++|++..|+.+.. .+.|..+++.+................+++ ..+.
T Consensus 231 ~~dG~~~~~~~~---------~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ 300 (386)
T 3v65_B 231 SMDGSGRRIIAD---------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDS 300 (386)
T ss_dssp ETTSCSCEEEEC---------SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTE
T ss_pred eCCCCCcEEEEE---------CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCE
Confidence 876432222110 12234788999998877777654 578999998765433222233456778888 4455
Q ss_pred eEEEecCCCcEEEEe
Q 012699 442 MFLTGSADHSVQVMS 456 (458)
Q Consensus 442 ~l~s~~~dg~v~iw~ 456 (458)
++++-...+.|..++
T Consensus 301 ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 301 LYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEeeCCCCeEEEEE
Confidence 666666667777665
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.69 E-value=8.9e-06 Score=79.19 Aligned_cols=246 Identities=8% Similarity=0.003 Sum_probs=135.4
Q ss_pred CCeEEEEeCCCCCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEc-CC-----CcEEEEE
Q 012699 148 SPISCCRFSSSGNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGT-AD-----GGIKAWN 220 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~~wd 220 (458)
....++++.+++++++.|+. +..+.+||..+.+..... .......-.+++.. +++++++.|+ .+ ..+.+||
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd 320 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYS 320 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-CCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECC-CCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeC
Confidence 33445778889999999884 458999998766433211 11111112233443 4788888888 34 4799999
Q ss_pred cCCCceeeeccCC--CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC------
Q 012699 221 VDAKRVVCDLNTT--DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED------ 292 (458)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~------ 292 (458)
..+++....-... .....-....+..++..++.++.++. .........+..||..+............
T Consensus 321 ~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~----~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 321 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS----VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC----EEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred CCCCcceeCCCccccccccccccceeecCCceEEEECCCCc----EEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 9887754321000 00000011223345555555554421 11111224788999987664433221110
Q ss_pred -CCcEEEEEEcc-CCCEEEEEecCC-----------eEEEEeCCCCceeeee--eCCCCC-eEEEEEcCCCCEEEEecCC
Q 012699 293 -PPAITSLCFNH-NGKILAASAVDG-----------MIHMFDMSAGLQITGW--PAHDSA-ISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 293 -~~~i~~~~~~~-~~~~l~~~~~dg-----------~i~v~d~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~l~~~~~d 356 (458)
...-.++.+.. ++++++.|+.++ .+.+||..+.+..... ..+... -.+++..|+++.++.|+.+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 11224455543 677788887543 6888888776544332 112222 2345666899999999864
Q ss_pred -----------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 357 -----------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 357 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
..+.+||..+.. |... ..............+.|+|+.++.|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~---W~~~----~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT---FYKQ----NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE---EEEC----CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCc---eeec----CCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999987642 2111 111111222234556799999999885
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.69 E-value=6.9e-05 Score=62.47 Aligned_cols=207 Identities=10% Similarity=0.097 Sum_probs=129.3
Q ss_pred eeeccCCCCeEEEEeCCCCCEEEE-EeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEE
Q 012699 141 ETFLGHTSPISCCRFSSSGNNIAS-ASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAW 219 (458)
Q Consensus 141 ~~~~~h~~~v~~~~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 219 (458)
+.+.+-.+.+..++|+|++..|++ ...++.|...|.. ++.... ...........+++. .++.++++.-.++.+.++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~-i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT-IPLDFVKDLETIEYI-GDNQFVISDERDYAIYVI 96 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE-EECSSCSSEEEEEEC-STTEEEEEETTTTEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE-EecCCCCChHHeEEe-CCCEEEEEECCCCcEEEE
Confidence 566777778999999998766654 6677888888876 443322 222233567888888 677777776677889999
Q ss_pred EcCCCce---eeeccC----CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC-CCCceeEEee---
Q 012699 220 NVDAKRV---VCDLNT----TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM-KTWKAMTVLP--- 288 (458)
Q Consensus 220 d~~~~~~---~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~-~~~~~~~~~~--- 288 (458)
++..... ...... .........+++.|.+..+.++..... ..|..|+- ........+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p-----------~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP-----------IEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS-----------EEEEEEESTTCSSCCEEEECHH
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC-----------ceEEEEcccccCCceeeecchh
Confidence 8875542 122211 122245689999999987777665431 14444541 1111122211
Q ss_pred --cCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCCC---------CCeEEEEEcCCCCEEEEecCC
Q 012699 289 --LGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAHD---------SAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 289 --~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d 356 (458)
.......+..++++|. +.+++.......+.++|.. ++.+..+.-.. .....|+|.++|+..++ +.-
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~ 243 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP 243 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence 0112235789999996 4555666667889999966 55655554322 25689999999985554 665
Q ss_pred CeEEEEe
Q 012699 357 GKIIEWS 363 (458)
Q Consensus 357 g~i~iwd 363 (458)
+.++.+.
T Consensus 244 n~~y~f~ 250 (255)
T 3qqz_A 244 NRFYRFT 250 (255)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 6555553
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=1.8e-05 Score=72.48 Aligned_cols=249 Identities=8% Similarity=0.041 Sum_probs=140.7
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeecccee
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFAS 272 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (458)
....++++|.++..|+.+...+.|+.+|+.++....... .......++++++++.++.+....... ...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~--------~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNND--------RPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTT--------SEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcc--------cce
Confidence 457788985234445555554889999998876554433 225688999999999665554321000 013
Q ss_pred EEEEECCCCcee--EEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeeeeC-CCCCeEEEEEcCCCC
Q 012699 273 LTVWNMKTWKAM--TVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGWPA-HDSAISSILFGPDET 348 (458)
Q Consensus 273 i~i~d~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 348 (458)
+..++.. +... ..+.... ....++++| ++.++++-..++.|+.++...+........ .......++|+|+++
T Consensus 207 v~~~~~~-g~~~~~~~l~~~~---~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 207 NYILTRE-SGFKVITELTKGQ---NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEEEEGG-GTSCSEEEEEECS---SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred EEEEeCC-CceeeeeeeccCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence 3334432 2221 2222112 246788999 676666666678999999886654222221 224567899999999
Q ss_pred EE-EEecCCCeEEEEeccCC-Cee---EEeecC---CcccCC---CCCCCcee-EEEEc--------cCCCEEEEEeCCc
Q 012699 349 SI-FSLGSDGKIIEWSLQNQ-GQV---LWTRNC---SRFCDP---ESSKSCRH-EMALD--------VNGRRLLVTSGSV 408 (458)
Q Consensus 349 ~l-~~~~~dg~i~iwd~~~~-~~~---~~~~~~---~~~~~~---~~~~~~v~-~~~~s--------~~g~~l~~~~~~~ 408 (458)
+| ++-...+.|..++.... +.. ...... ...... ...-.... .++.. ++|.++++=..++
T Consensus 283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~ 362 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH 362 (430)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence 54 45556788999887642 111 000000 000000 00111233 45553 3455555555667
Q ss_pred cEEEEEccCCCcccccCC------------------CCCcEEEEEECC-CCCeEEEecCCCcEEEEeCC
Q 012699 409 RAPIYQVRGHASGMRTLP------------------HGAAITTVDWHP-TLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 409 ~i~i~~~~~~~~~~~~~~------------------h~~~v~~~~~~~-~~~~l~s~~~dg~v~iw~l~ 458 (458)
+|+.++..+. +..+.+ .-.....++++| ++.++++-.....|+.++++
T Consensus 363 ~I~~i~~~G~--v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 363 CIRILTPQGR--VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECTTSE--EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECCCCc--EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8888874331 111111 112589999999 46666666667889888764
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=0.00016 Score=63.21 Aligned_cols=217 Identities=12% Similarity=0.057 Sum_probs=132.7
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC---ceeEEeecC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW---KAMTVLPLG 290 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~---~~~~~~~~~ 290 (458)
..|+..|+.+.+....+... ..+..++|++.+..++.+.... +.|..+++... .....+. .
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~---~~p~g~~~d~~~~~ly~~D~~~------------~~I~~~~~~g~~~~~~~~~~~-~ 73 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI-S 73 (316)
T ss_dssp SSEEEEETTSCCCEEEECSC---SSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEE-C
T ss_pred CeEEEEECCCcceEehhcCC---CceEEEEEEeCCCEEEEEECCC------------CcEEEEECCCCCCCcccEEEE-e
Confidence 46899999887655544322 4678999998776666555443 58999998761 2222221 1
Q ss_pred CCCCcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-C-CeEEEEeccCC
Q 012699 291 EDPPAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-D-GKIIEWSLQNQ 367 (458)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~~~ 367 (458)
........+++++.+..|+ +-...+.|.++++........+.........+++.|.+..|+.+.. . +.|...++...
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~ 153 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 153 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence 2223457889987555554 4456789999998754433333333456789999996665554443 3 67888887643
Q ss_pred CeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeEE
Q 012699 368 GQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMFL 444 (458)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~ 444 (458)
...... . ..-.....++++|++..|+.+.. .+.|..+++++........ ........+++. .+.+++
T Consensus 154 ~~~~~~-~--------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~ 223 (316)
T 1ijq_A 154 DIYSLV-T--------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW 223 (316)
T ss_dssp CEEEEE-C--------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred CeEEEE-E--------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEE
Confidence 221111 0 12245789999998888777664 5789999998643221111 123456778885 355666
Q ss_pred EecCCCcEEEEe
Q 012699 445 TGSADHSVQVMS 456 (458)
Q Consensus 445 s~~~dg~v~iw~ 456 (458)
+-...+.|..++
T Consensus 224 ~d~~~~~V~~~~ 235 (316)
T 1ijq_A 224 TDIINEAIFSAN 235 (316)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCeEEEEe
Confidence 666667777766
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.63 E-value=2e-05 Score=72.21 Aligned_cols=249 Identities=10% Similarity=0.065 Sum_probs=143.2
Q ss_pred ceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 193 EIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 193 ~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
....++|+|. +...|+.+...+.|+.+|..++....... .......+++++++.++++........ .
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~---------~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTN---------T 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTS---------E
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCccc---------c
Confidence 3568899853 33445555444899999998887665443 225688999999999555443211000 1
Q ss_pred eEEEEECCCCce-eEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCceeeee-e-CCCCCeEEEEEcCCC
Q 012699 272 SLTVWNMKTWKA-MTVLPLGEDPPAITSLCFNH-NGKILAASAVDGMIHMFDMSAGLQITGW-P-AHDSAISSILFGPDE 347 (458)
Q Consensus 272 ~i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~-~~~~~v~~~~~~~~~ 347 (458)
.+...+...... ...+. .......++++| ++.+.++-..++.|+.+|..++.....+ . +....-..++|+|++
T Consensus 208 gv~~~~~~~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 208 GIYLFTRASGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp EEEEECGGGTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred eEEEEECCCCeecccccc---ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 233333322111 01111 112346688999 6665555556788999998877652222 2 112233579999999
Q ss_pred CEEE-EecCCCeEEEEeccCCCe-e----EEeecCCc--ccC---CCCCCCceeEEEE---------ccCCCEEEEEeCC
Q 012699 348 TSIF-SLGSDGKIIEWSLQNQGQ-V----LWTRNCSR--FCD---PESSKSCRHEMAL---------DVNGRRLLVTSGS 407 (458)
Q Consensus 348 ~~l~-~~~~dg~i~iwd~~~~~~-~----~~~~~~~~--~~~---~~~~~~~v~~~~~---------s~~g~~l~~~~~~ 407 (458)
++|+ +-...+.|+.++...... . ........ ... ....-.....+++ .++|.++++-..+
T Consensus 285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n 364 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS 364 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence 8554 445578899988753211 0 00000000 000 0011234677999 7777777666677
Q ss_pred ccEEEEEccCCCcccccCC------------------CCCcEEEEEEC-CCCCeEEEecCCCcEEEEeCC
Q 012699 408 VRAPIYQVRGHASGMRTLP------------------HGAAITTVDWH-PTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 408 ~~i~i~~~~~~~~~~~~~~------------------h~~~v~~~~~~-~~~~~l~s~~~dg~v~iw~l~ 458 (458)
++|+.++..+ .+..+.+ .-.....|+++ +++.++++=.....|+..+++
T Consensus 365 ~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECTTS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECCCC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8899888643 1111111 11347899999 677777766677889988764
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.61 E-value=0.00018 Score=62.77 Aligned_cols=226 Identities=7% Similarity=-0.011 Sum_probs=136.3
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV 247 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (458)
...|+..++++...... ........+..++|++.++.++.+-...+.|..+++..+.....+.. ........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~-~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT-IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-SGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCE-EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE-ECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEE-EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc-CCCCCccEEEEEcC
Confidence 46788899876542111 12222345678999976777777777888999999886632111111 11134667888876
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEeCCCC
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFDMSAG 325 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d~~~~ 325 (458)
+..++.+.... +.|.++++........+ .........++++|.+.+|+.... .+.|..+++...
T Consensus 90 ~g~ly~~d~~~------------~~I~~~~~dG~~~~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 155 (318)
T 3sov_A 90 GEKLYWTDSET------------NRIEVSNLDGSLRKVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 155 (318)
T ss_dssp TTEEEEEETTT------------TEEEEEETTSCSCEEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred CCeEEEEECCC------------CEEEEEECCCCcEEEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence 55554443322 48999998754333322 123345789999997667766653 578999987643
Q ss_pred ceeeee-eCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEE
Q 012699 326 LQITGW-PAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLV 403 (458)
Q Consensus 326 ~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 403 (458)
....+ ...-...+.|+++|++..|+.+ +..+.|..+|+......... . .....+..+++.. +.++.+
T Consensus 156 -~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~--------~~~~~P~glav~~-~~lywt 224 (318)
T 3sov_A 156 -SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-K--------GSLPHPFALTLFE-DILYWT 224 (318)
T ss_dssp -SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-C--------SCCSCEEEEEEET-TEEEEE
T ss_pred -CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-c--------CCCCCceEEEEeC-CEEEEE
Confidence 33332 2223456899999966666554 45788999998743322111 0 1233456777753 334444
Q ss_pred EeCCccEEEEEccCCCc
Q 012699 404 TSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 404 ~~~~~~i~i~~~~~~~~ 420 (458)
-...+.|..++..+++.
T Consensus 225 d~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 225 DWSTHSILACNKYTGEG 241 (318)
T ss_dssp ETTTTEEEEEETTTCCS
T ss_pred ecCCCeEEEEECCCCCc
Confidence 44567888888865543
No 279
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.59 E-value=0.00028 Score=62.02 Aligned_cols=275 Identities=12% Similarity=0.039 Sum_probs=145.8
Q ss_pred CCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcccc--ccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 147 TSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNAT--IYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
...+.++.|.+++..++. +.+|.|. ...+.++.=..... ......+..+.|. + +..++ ++..+.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~~~~-~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NEGWI-VGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEE-T-TEEEE-EEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEec-C-CeEEE-EECCCeEEE-ECCCC
Confidence 457899999887777774 5567653 33333321111111 1123468889887 3 44444 445564443 33334
Q ss_pred ceeeeccCC-CCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699 225 RVVCDLNTT-DAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 225 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (458)
+.-...... .....+..+.+.+++..++.+. . |.|.. ....++.-.... ......+..+++.|
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-------------g~v~~-S~DgG~tW~~~~-~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-V-------------GAIYR-TKDSGKNWQALV-QEAIGVMRNLNRSP 172 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEET-T-------------CCEEE-ESSTTSSEEEEE-CSCCCCEEEEEECT
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeC-C-------------ccEEE-EcCCCCCCEEee-cCCCcceEEEEEcC
Confidence 433332221 1113456677666666555443 2 23221 112222222222 23345688999999
Q ss_pred CCCEEEEEecCCeEEE-EeC--CCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCccc
Q 012699 304 NGKILAASAVDGMIHM-FDM--SAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFC 380 (458)
Q Consensus 304 ~~~~l~~~~~dg~i~v-~d~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 380 (458)
++.+++++. +|.++. .|- .+.+.+. ......+..+++.+++..++ .+.+|.+++.+...+ ..+.. ..
T Consensus 173 ~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G--~tW~~----~~ 242 (327)
T 2xbg_A 173 SGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS--ENWGE----LL 242 (327)
T ss_dssp TSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEE--EEECC----CB
T ss_pred CCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCC--CeeEe----cc
Confidence 988887765 444444 342 2223332 23456788999999887554 456787776642211 11111 11
Q ss_pred CC-CCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 381 DP-ESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 381 ~~-~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.+ ......+..+++.+++..++++. ++.+ ++..+.++.-.... .+...+.++.|.+++. +++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 11 11223578899998887776654 5656 34444443222222 2345678899976555 66677789877654
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.58 E-value=0.00011 Score=67.33 Aligned_cols=245 Identities=9% Similarity=0.000 Sum_probs=138.2
Q ss_pred CeEEEEeCCC--CCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC---C-cEEEEEcC
Q 012699 149 PISCCRFSSS--GNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD---G-GIKAWNVD 222 (458)
Q Consensus 149 ~v~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g-~i~~wd~~ 222 (458)
....++|+|+ ...|+.+...+.|+.+|..++.... ..........++++ ++++++++.... . .+...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~---~~~~~~~P~giavd-~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI---KTTNIGQCADVNFT-LNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE---ECCCCSCEEEEEEC-TTCCEEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE---eecCCCCccEEEEC-CCCCEEEEcCCCCcccceEEEEECC
Confidence 4568999984 4455555544889999987665432 22234567899999 566644444321 1 13333332
Q ss_pred CCcee-eeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCce-eEEeecCCCCCcEEEE
Q 012699 223 AKRVV-CDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKA-MTVLPLGEDPPAITSL 299 (458)
Q Consensus 223 ~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~-~~~~~~~~~~~~i~~~ 299 (458)
.+... ..+. .......++++| ++.++++.... +.|+.+|..++.. ...+.... ......+
T Consensus 216 ~~~~~~~~~~---~~~~P~giavd~~~G~lyv~d~~~-------------~~V~~~d~~~g~~~~~~~~~~~-~~~~~~i 278 (433)
T 4hw6_A 216 SGFTERLSLC---NARGAKTCAVHPQNGKIYYTRYHH-------------AMISSYDPATGTLTEEEVMMDT-KGSNFHI 278 (433)
T ss_dssp GTTCCEEEEE---ECSSBCCCEECTTTCCEEECBTTC-------------SEEEEECTTTCCEEEEEEECSC-CSSCEEE
T ss_pred CCeecccccc---ccCCCCEEEEeCCCCeEEEEECCC-------------CEEEEEECCCCeEEEEEeccCC-CCCcccE
Confidence 22110 1111 113456788898 55555444333 5899999987766 23333222 2233579
Q ss_pred EEccCCCEEEEEe-cCCeEEEEeCCC--Cce--eeeeeCC---------------CCCeEEEEE---------cCCCCEE
Q 012699 300 CFNHNGKILAASA-VDGMIHMFDMSA--GLQ--ITGWPAH---------------DSAISSILF---------GPDETSI 350 (458)
Q Consensus 300 ~~~~~~~~l~~~~-~dg~i~v~d~~~--~~~--~~~~~~~---------------~~~v~~~~~---------~~~~~~l 350 (458)
+|+|++++|+++. ..+.|+.+++.. +.. ...+.+. -.....+++ .+++.++
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 9999999665554 467899988652 221 1111111 123567899 7777777
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCCc-----c----cCCCCCCCceeEEEEc-cCCCEEEEEeCCccEEEEEcc
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCSR-----F----CDPESSKSCRHEMALD-VNGRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~----~~~~~~~~~v~~~~~s-~~g~~l~~~~~~~~i~i~~~~ 416 (458)
++-...+.|+.++.. +.......... . ......-..+..++++ ++|.++++=..+++|+.++++
T Consensus 359 vaD~~n~~I~~~~~~--G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 359 FCDRDSHTVRVLTPE--GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEECTT--SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEECCC--CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 777778889999853 23322211100 0 0011122457889999 566655555567788887764
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.57 E-value=4.6e-05 Score=75.34 Aligned_cols=197 Identities=8% Similarity=0.030 Sum_probs=109.9
Q ss_pred CeEEEEeC-CCCCEEEEEeC-CC----cEEEEecCCC-CCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcE
Q 012699 149 PISCCRFS-SSGNNIASASV-DG----TVRIWTYDSS-TPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGI 216 (458)
Q Consensus 149 ~v~~~~~~-~~~~~l~s~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i 216 (458)
.+...+|| |||++||.+.. +| +|+++|+.++ +.... .. ......++|+ ++++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~--~~~~~~~~Ws-pDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KV--SGTNGEIVWG-PDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CE--EEECSCCEEC-SSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cc--cCceeeEEEe-cCCCEEEEEEECCCCCCCEE
Confidence 57789999 99998875532 22 5999999987 53211 11 1113467899 455445444443 258
Q ss_pred EEEEcCCCce--eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-ee--EEeecCC
Q 012699 217 KAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-AM--TVLPLGE 291 (458)
Q Consensus 217 ~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~~--~~~~~~~ 291 (458)
..+++.++.. ...+..... .....+.|+|+++.++...... ....|.++|+.++. .. ..+. ..
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~SpDg~~l~~~~~~~----------~~~~l~~~d~~~~~~~~~~~~l~-~~ 317 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNP-LFSAFMYKAADTNTLCIGSQSP----------ETAEVHLLDLRKGNAHNTLEIVR-PR 317 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCT-TCEEEEEECTTSSEEEEEEECS----------SCEEEEEEESSSCTTCCCEEESS-CC
T ss_pred EEEECCCCchhcEEEEecCCC-ceEEEEEECCCCCEEEEEecCC----------CCceEEEEECCCCCCCceeEEee-cC
Confidence 8888877642 122222211 3456789999999888766432 12488999998753 12 2222 22
Q ss_pred CCCcEEEEEEccCCCEEE-EEecC----CeEEEEeCCCCceeee-eeCCCC--CeEEEEEcCCCCEEEEecCCCeEE--E
Q 012699 292 DPPAITSLCFNHNGKILA-ASAVD----GMIHMFDMSAGLQITG-WPAHDS--AISSILFGPDETSIFSLGSDGKII--E 361 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~-~~~~d----g~i~v~d~~~~~~~~~-~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~--i 361 (458)
.......+.|+. |+.|+ ....+ ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++..+ +
T Consensus 318 ~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 318 EKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred CCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 333445555544 55444 44333 3677788765322222 333433 34455554 233455566677644 4
Q ss_pred Eec
Q 012699 362 WSL 364 (458)
Q Consensus 362 wd~ 364 (458)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 554
No 282
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.57 E-value=0.0011 Score=68.04 Aligned_cols=378 Identities=13% Similarity=0.094 Sum_probs=199.6
Q ss_pred CcceeeeeeccCC------Cceeeeeec-CcceEEeccccccccccceee-eeccCCceeeeeCCccceeEeeccCCCcc
Q 012699 24 SETIKYANIGQTK------NSTLASGVN-EESLLLSTNSSEACATTATHM-GSAEMGQTWASSRPALSRFATNMSGNDSI 95 (458)
Q Consensus 24 ~~~i~~~~~~s~~------~~~l~s~~~-d~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 95 (458)
...|.|+++ .+. +.++|.|.. |++++|.+...-......... ...|.. +.+.......+|..|..||.+
T Consensus 553 ~~evscl~i-~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~s--i~l~~~~~~~~L~igl~dG~l 629 (1158)
T 3ei3_A 553 EHEVACLDI-TPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRS--ILMTTFESSHYLLCALGDGAL 629 (1158)
T ss_dssp SSCEEEEEC-CCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEE--EEEEEETTEEEEEEEETTSEE
T ss_pred CCceEEEEe-ecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcE--EEEEEeCCCcEEEEEeCCCeE
Confidence 447999999 543 468999985 999999998753322111100 012221 222222345778888888887
Q ss_pred cccccccccCCcccceeeeccCCCCcCCCcceeccCCCeeeeeeeeeeccCCCCeEEEEeCCCCCE-EEEEeCCCcEEEE
Q 012699 96 SPSKLEFEDVGAGDIIQMFNDGLYTENGRDAQGEEDFPEVKVDFLETFLGHTSPISCCRFSSSGNN-IASASVDGTVRIW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~s~~~dg~v~iw 174 (458)
.-+.++........ ....+-| ..++.-..+...+.. ++.+| +.-..++
T Consensus 630 ~~~~~d~~tg~l~d-----------------------------~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy 678 (1158)
T 3ei3_A 630 FYFGLNIETGLLSD-----------------------------RKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIY 678 (1158)
T ss_dssp EEEEECTTTCCEEE-----------------------------EEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEE
T ss_pred EEEEEcCCCCcccc-----------------------------ceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEE
Confidence 66554331110000 0000111 123322222222222 22222 2333333
Q ss_pred ecCCCCCCCccccccCCCce-EEEEEecCC-CeEEEEEcCCCcEEEEEcCCCce--eeeccCCCCCCceeeeeecCCCCe
Q 012699 175 TYDSSTPASRNATIYCGTEI-MSLEWECKS-DRLLLIGTADGGIKAWNVDAKRV--VCDLNTTDAFPSVLDLKCSPVEPI 250 (458)
Q Consensus 175 d~~~~~~~~~~~~~~~~~~v-~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 250 (458)
.-. +... ...... .++ ....|+... .+-++..+ ++.+++..++.-+. ..++... ..+..++++|..+.
T Consensus 679 ~~~-~~l~--~s~l~~-~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~---~Tprri~y~~~~~~ 750 (1158)
T 3ei3_A 679 SSN-HKLV--FSNVNL-KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLY---ESPRKICYQEVSQC 750 (1158)
T ss_dssp ESS-SSEE--EEEBSS-SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECS---SEEEEEEEEGGGTE
T ss_pred EcC-CceE--EeccCh-HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCC---CCceEEEEcCCCCE
Confidence 211 1111 011111 122 233344221 23344433 45588888764332 2333333 46888999998887
Q ss_pred EEEeecccC----CCCcc--------------------------------eeeccceeEEEEECCCCceeEEeecCCCCC
Q 012699 251 FVSAAASRR----YGSSN--------------------------------IYSWGFASLTVWNMKTWKAMTVLPLGEDPP 294 (458)
Q Consensus 251 ~~~~~~~~~----~~~~~--------------------------------~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~ 294 (458)
++....+.. .+... -.....+.|++.|..+++.+..+.+... .
T Consensus 751 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n-E 829 (1158)
T 3ei3_A 751 FGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN-E 829 (1158)
T ss_dssp EEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTT-E
T ss_pred EEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC-c
Confidence 665543221 00000 0001236899999999999888887655 3
Q ss_pred cEEEEEE---ccC-CCEEEEEe----------cCCeEEEEeCCCCceeeee-eCCCCCeEEEEEcCCCCEEEEecCCCeE
Q 012699 295 AITSLCF---NHN-GKILAASA----------VDGMIHMFDMSAGLQITGW-PAHDSAISSILFGPDETSIFSLGSDGKI 359 (458)
Q Consensus 295 ~i~~~~~---~~~-~~~l~~~~----------~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 359 (458)
.+.+++. ..+ ..+|++|+ ..|.|++|++..++..... ....+++++++-- +|+.+++. ..++
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l 906 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTV 906 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEE
Confidence 4555553 222 46888887 3588999998744322111 2336788888743 45444433 4689
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccC---CCCCcEEEEEE
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTL---PHGAAITTVDW 436 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~---~h~~~v~~~~~ 436 (458)
++|++...+.+.. .+..+ ..+..+.....+.++++|.--..+.++..+......... .+...++++.|
T Consensus 907 ~vy~l~~~~~L~~--~~~~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ 977 (1158)
T 3ei3_A 907 RLYEWTTEKELRT--ECNHY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEI 977 (1158)
T ss_dssp EEEEECTTSCEEE--EEEEC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEE
T ss_pred EEEECCCCceEEE--Eeecc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEE
Confidence 9999986543331 11111 113333444568899999988888887665432222222 35567888888
Q ss_pred CCCCCeEEEecCCCcEEEEeC
Q 012699 437 HPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 437 ~~~~~~l~s~~~dg~v~iw~l 457 (458)
-.++ .++.+..+|.+.+...
T Consensus 978 ld~~-t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 978 LDDD-NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EETT-EEEEEETTSEEEEEEE
T ss_pred EccC-cEEEEcCCCcEEEEec
Confidence 6554 6777899999998764
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=8.6e-05 Score=68.15 Aligned_cols=255 Identities=10% Similarity=0.079 Sum_probs=144.5
Q ss_pred ceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-CCCceeeeee-------cCCCCeEEEeecccCCCCc
Q 012699 193 EIMSLEWECK-SDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-AFPSVLDLKC-------SPVEPIFVSAAASRRYGSS 263 (458)
Q Consensus 193 ~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~ 263 (458)
....|+|+|. .++++++....+.|++.|++++.......... .......++| ++++..++.+.......
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~-- 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG-- 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG--
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc--
Confidence 4678999963 44555555445779999999877765444322 2346889999 99998666655432000
Q ss_pred ceeeccceeEEEEECCC-Ccee-----EEeecCCCCCcEEEEEEccC-CCEEEEEecCCeEEEEeCC-------CCce--
Q 012699 264 NIYSWGFASLTVWNMKT-WKAM-----TVLPLGEDPPAITSLCFNHN-GKILAASAVDGMIHMFDMS-------AGLQ-- 327 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~-~~~~-----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~-------~~~~-- 327 (458)
.....+.+++... +... ..+....+ ...++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 218 ----~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 218 ----DESPSVYIIKRNADGTFDDRSDIQLIAAYKQ---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp ----GGEEEEEEEECCTTSCCSTTSCEEEEEEESC---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred ----ccCceEEEEecCCCCceeecccceeeccCCC---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence 0002466665433 1221 12211122 356788995 5555556667889999987 4443
Q ss_pred ---------eee-ee-CCCCCeEEEEEcCCCCEEE-EecCCCeEEEEeccCCCee-----EEeec--CCcccCC---CCC
Q 012699 328 ---------ITG-WP-AHDSAISSILFGPDETSIF-SLGSDGKIIEWSLQNQGQV-----LWTRN--CSRFCDP---ESS 385 (458)
Q Consensus 328 ---------~~~-~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~-----~~~~~--~~~~~~~---~~~ 385 (458)
... +. +.......|+|+|+|++|+ +-+....|+.++....... ..... ..-.... ...
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence 111 11 2234568999999999544 4456778988776532211 11110 0000000 011
Q ss_pred CCcee-EEEEc-------cCCCEEEEEeCCccEEEEEccCCCcccccCC------------------------CCCcEEE
Q 012699 386 KSCRH-EMALD-------VNGRRLLVTSGSVRAPIYQVRGHASGMRTLP------------------------HGAAITT 433 (458)
Q Consensus 386 ~~~v~-~~~~s-------~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~------------------------h~~~v~~ 433 (458)
-..+. .++.. ++|.++++=..+.+|+.++..+ .+..+.+ .-.....
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 12344 45554 4566666556678899888543 1211111 1135789
Q ss_pred EEECCC-CCeEEEecCCCcEEEEeCC
Q 012699 434 VDWHPT-LPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 434 ~~~~~~-~~~l~s~~~dg~v~iw~l~ 458 (458)
|+++++ +.++++=.....||.++++
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECC
Confidence 999997 7766666677889988763
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=6.7e-05 Score=68.68 Aligned_cols=244 Identities=9% Similarity=0.033 Sum_probs=135.7
Q ss_pred CeEEEEeCC-CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC-CC----cEEEEEcC
Q 012699 149 PISCCRFSS-SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA-DG----GIKAWNVD 222 (458)
Q Consensus 149 ~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg----~i~~wd~~ 222 (458)
....|+++| ++..|+.+...+.|+.+|+.++.... ..........++|+ ++++.|+.+.. ++ .+.+.+..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d-~~G~~lyvad~~~~~~~~~v~~~~~~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWT-HEADSMIITNDQNNNDRPNNYILTRE 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEEC-TTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEe-CCCCEEEEEeCCCCcccceEEEEeCC
Confidence 457899998 45566666555889999987654321 22244567899999 56664444443 22 23334432
Q ss_pred CCcee--eeccCCCCCCceeeeeecC-CCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEE
Q 012699 223 AKRVV--CDLNTTDAFPSVLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSL 299 (458)
Q Consensus 223 ~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~ 299 (458)
+... ..+.. ......++++| ++.++++-... +.|..++...+.......... ......+
T Consensus 214 -g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~-------------~~V~~~~~~~~~~~~~~~~~~-~~~P~gi 275 (430)
T 3tc9_A 214 -SGFKVITELTK---GQNCNGAETHPINGELYFNSWNA-------------GQVFRYDFTTQETTPLFTIQD-SGWEFHI 275 (430)
T ss_dssp -GTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTT-------------TEEEEEETTTTEEEEEEECSS-SSCCEEE
T ss_pred -Cceeeeeeecc---CCCceEEEEeCCCCEEEEEECCC-------------CEEEEEECCCCcEEEEEEcCC-CCcceeE
Confidence 2221 12211 13467788999 55555544333 499999998765533333322 2346889
Q ss_pred EEccCCCEEEEE-ecCCeEEEEeCCC--Cce--eeeeeCC---------------CCCeE-EEEEc--------CCCCEE
Q 012699 300 CFNHNGKILAAS-AVDGMIHMFDMSA--GLQ--ITGWPAH---------------DSAIS-SILFG--------PDETSI 350 (458)
Q Consensus 300 ~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~--~~~~~~~---------------~~~v~-~~~~~--------~~~~~l 350 (458)
+|+|++++|++. ...+.|..++... ++. ...+.+. -.... .++.. +++.++
T Consensus 276 a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~ly 355 (430)
T 3tc9_A 276 QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFY 355 (430)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEE
Confidence 999999965554 4567899988653 211 1111111 01122 45543 345555
Q ss_pred EEecCCCeEEEEeccCCCeeEEeecCC--ccc-------CCCCCCCceeEEEEccC-CCEEEEEeCCccEEEEEcc
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRNCS--RFC-------DPESSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVR 416 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~-------~~~~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~ 416 (458)
++-...+.|+.++.. +......... ... .....-..+..++++|+ +.++++-..+.+|+.++++
T Consensus 356 vaD~~n~~I~~i~~~--G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 356 FCDRENHCIRILTPQ--GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEGGGTEEEEECTT--SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCcEEEEECCC--CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 555567788888832 2322221110 000 00111235789999995 5555544456788887764
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.54 E-value=0.00075 Score=64.73 Aligned_cols=297 Identities=10% Similarity=-0.060 Sum_probs=160.5
Q ss_pred CCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc
Q 012699 147 TSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR 225 (458)
Q Consensus 147 ~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 225 (458)
-...+.|++++++..|+.+ ...+.|...+++....... . .........+++. . +.++++-...+.|...|..+++
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~-~-~~~~~~P~gi~~~-~-~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV-V-KGSLPHPFALTLF-E-DILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEES-S-SEEEEECTTTCSEEEEESSSCC
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE-E-eCCCCCceEEEEe-C-CEEEEecCCCCEEEEEECCCCc
Confidence 3456889999876666555 4567888888875433211 1 1111223466665 3 3555565667889999988776
Q ss_pred eeeeccCCCCC-----------------------Cceeeeee-cCCC-CeEEEeec------ccC----CCCcceeeccc
Q 012699 226 VVCDLNTTDAF-----------------------PSVLDLKC-SPVE-PIFVSAAA------SRR----YGSSNIYSWGF 270 (458)
Q Consensus 226 ~~~~~~~~~~~-----------------------~~v~~~~~-~~~~-~~~~~~~~------~~~----~~~~~~~~~~~ 270 (458)
....+...... +.+..+++ .|.. .+-..+.. ++. ....++.....
T Consensus 246 ~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~ 325 (619)
T 3s94_A 246 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARR 325 (619)
T ss_dssp CCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEES
T ss_pred ccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcc
Confidence 54433321100 00111111 1111 11111100 000 00111222223
Q ss_pred eeEEEEECCCCceeE-EeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCC-C
Q 012699 271 ASLTVWNMKTWKAMT-VLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPAHDSAISSILFGPD-E 347 (458)
Q Consensus 271 g~i~i~d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~-~ 347 (458)
+.|+..++....... .+... .-..+..++|++.+..|+.+. ..+.|+.+++........+...-.....+++.+. +
T Consensus 326 ~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 326 TDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp SCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred cceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccC
Confidence 466666666543222 12221 223578899998666665554 4778999998754433333333346678999874 4
Q ss_pred CEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCCcccccC
Q 012699 348 TSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHASGMRTL 425 (458)
Q Consensus 348 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~~~~~~~ 425 (458)
+..++-+..+.|.+.++......... ...-..+..+++.|...+|+.+.. ...|...++++........
T Consensus 405 ~lY~tD~~~~~I~v~~~~G~~~~~l~---------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 475 (619)
T 3s94_A 405 NLYWTDTGTDRIEVTRLNGTMRKILI---------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN 475 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEE---------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred cEEEEeCCCCcEEEEeCCCCeEEEEE---------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence 45555566788999998754321111 012345789999997666666543 3677777777654322222
Q ss_pred CCCCcEEEEEECCCCCeEEEec-CCCcEEEEeC
Q 012699 426 PHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSL 457 (458)
Q Consensus 426 ~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l 457 (458)
..-...+.+++++++..|+.+. ..+.|...++
T Consensus 476 ~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 476 TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred CCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 3345788999998777666554 4456776665
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.54 E-value=0.00032 Score=63.56 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=134.0
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc----eeEEeec
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK----AMTVLPL 289 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~----~~~~~~~ 289 (458)
..|+..++........+.. ...+..++|++.+..++.+.... +.|+.+++.... ....+
T Consensus 92 ~~I~~i~l~~~~~~~~~~~---~~~~~~l~~d~~~~~lywsD~~~------------~~I~~~~~~g~~~~~~~~~~~-- 154 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPN---LRNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI-- 154 (400)
T ss_dssp TEEEEECTTSCSCEEEECS---CSCEEEEEEETTTTEEEEEETTT------------TEEEEEEC------CCCEEEE--
T ss_pred ceeEEEccCCcceeEeccc---cCcceEEeeeeccCceEEEecCC------------CeEEEEEcccCCCCCcceEEE--
Confidence 5788888887655444332 25688999998777666655433 488888886522 22222
Q ss_pred CCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccC
Q 012699 290 GEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQN 366 (458)
Q Consensus 290 ~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~ 366 (458)
.........+++++.+..| ++-...+.|.+.++........+.........|++.|.+..|+.... .+.|...++..
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 2233457889999854444 45455789999998765544444444456789999996666655442 46788888875
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCeE
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPMF 443 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l 443 (458)
........ ..-..+..++++|++..|+.+.. .+.|..+++++........ +......++++. .+.++
T Consensus 235 ~~~~~~~~---------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~ly 304 (400)
T 3p5b_L 235 VDIYSLVT---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVF 304 (400)
T ss_dssp CSCEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEE
T ss_pred CccEEEEE---------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEE
Confidence 33222111 12245789999998888887764 5789999987754322221 123455677773 34455
Q ss_pred EEecCCCcEEEEe
Q 012699 444 LTGSADHSVQVMS 456 (458)
Q Consensus 444 ~s~~~dg~v~iw~ 456 (458)
++-...+.|..++
T Consensus 305 wtd~~~~~V~~~~ 317 (400)
T 3p5b_L 305 WTDIINEAIFSAN 317 (400)
T ss_dssp EEESSSCSEEEEE
T ss_pred EecCCCCeEEEEE
Confidence 5555566777665
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.50 E-value=0.00057 Score=67.20 Aligned_cols=241 Identities=11% Similarity=-0.001 Sum_probs=143.3
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC----ce
Q 012699 151 SCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK----RV 226 (458)
Q Consensus 151 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~----~~ 226 (458)
.+.+..+.. +|+.+ ....|+..++...... ........+..++|++.++.++++-...+.|+.+++... ..
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~---~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~ 462 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 462 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCE---EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcce---eeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcce
Confidence 344443332 44443 3456888887655432 223344567899999667777777777888999998753 12
Q ss_pred eeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCC
Q 012699 227 VCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGK 306 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 306 (458)
...+.. .......|++.+.+..|+.+.... +.|.+.++........+. ........|+++|.+.
T Consensus 463 ~~vi~~--~l~~P~GLAvD~~~~~LY~tD~~~------------~~I~v~~ldG~~~~~l~~--~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 463 DTVISR--DIQAPDGLAVDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHG 526 (791)
T ss_dssp EEEECS--SCSCCCEEEEETTTTEEEEEETTT------------TEEEEEETTSSSEEEEEE--CTTCCEEEEEEETTTT
T ss_pred eEEEec--CCCCcceeeeeecCCcEEEEecCC------------CeEEEEeCCCCeEEEEEe--CCCCCcceEEEecCCC
Confidence 222221 124567889988876666555433 599999988654433332 2234578999999866
Q ss_pred EEEEEec--CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 307 ILAASAV--DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 307 ~l~~~~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
+|+.... .+.|.+.++........+...-.....|++++.+..|+.+ ...+.|...++........... .
T Consensus 527 ~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~-------~ 599 (791)
T 3m0c_C 527 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED-------E 599 (791)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC-------T
T ss_pred CEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecC-------C
Confidence 7766553 2689999987544333333334578899999866666655 4467899999875433222111 0
Q ss_pred CCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcc
Q 012699 384 SSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASG 421 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~ 421 (458)
........|++ .+.+|+.+. ..+.|...+..++...
T Consensus 600 ~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 600 KRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp TTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred CccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcce
Confidence 11123445555 344566555 4577888876555443
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=1.3e-05 Score=79.21 Aligned_cols=195 Identities=7% Similarity=0.049 Sum_probs=113.0
Q ss_pred ceeeeeec-CCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEE-eecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 238 SVLDLKCS-PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTV-LPLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 238 ~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
.+....|+ |+|+.++....... .....|+++|+.++ +.+.. +. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G--------~~~~~l~v~dl~~g~~~l~~~~~-----~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSG--------NEVYTIEFKRISDPSQTIADKVS-----GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSS--------SSCEEEEEEETTCTTCCCCCCEE-----EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCC--------CceEEEEEEECCCCCEeCCcccc-----CceeeEEEecCCCEEEEEEEC
Confidence 56778999 99998887654321 01136999999988 53211 11 112467899999988877665
Q ss_pred -----CeEEEEeCCCCce--eeeee-CCCCCeEEEEEcCCCCEEEEecC---CCeEEEEeccCCC-ee--EEeecCCccc
Q 012699 315 -----GMIHMFDMSAGLQ--ITGWP-AHDSAISSILFGPDETSIFSLGS---DGKIIEWSLQNQG-QV--LWTRNCSRFC 380 (458)
Q Consensus 315 -----g~i~v~d~~~~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~ 380 (458)
..|+++++.+++. ...+. ........+.|+|||++|+..+. ...|.++|+.+.. .. .. +.
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~------l~ 315 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI------VR 315 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE------SS
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE------ee
Confidence 3688889877642 22332 22344678899999998886553 3468888887642 11 11 10
Q ss_pred CCCCCCCceeEEEEccCCCEEEEEe-CC----ccEEEEEccCCCcccc-cCCCCC--cEEEEEECCCCCeEEEecCCCcE
Q 012699 381 DPESSKSCRHEMALDVNGRRLLVTS-GS----VRAPIYQVRGHASGMR-TLPHGA--AITTVDWHPTLPMFLTGSADHSV 452 (458)
Q Consensus 381 ~~~~~~~~v~~~~~s~~g~~l~~~~-~~----~~i~i~~~~~~~~~~~-~~~h~~--~v~~~~~~~~~~~l~s~~~dg~v 452 (458)
. ........+.|+. |+.|+..+ .+ ..|..+++.+...... +..|.. .+.++.+. .+.++++...||..
T Consensus 316 ~--~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~ 391 (751)
T 2xe4_A 316 P--REKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLT 391 (751)
T ss_dssp C--CCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEE
T ss_pred c--CCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEE
Confidence 0 1122233444443 55554443 33 3567777664222233 344443 45566665 23456667777865
Q ss_pred EEE
Q 012699 453 QVM 455 (458)
Q Consensus 453 ~iw 455 (458)
+||
T Consensus 392 ~l~ 394 (751)
T 2xe4_A 392 RIW 394 (751)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 289
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.49 E-value=0.0004 Score=58.98 Aligned_cols=261 Identities=12% Similarity=0.140 Sum_probs=158.3
Q ss_pred CCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecC
Q 012699 167 VDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSP 246 (458)
Q Consensus 167 ~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 246 (458)
.+..|.|-|+..+....+ ...... +.-.+ |....++.-. ..++.++|+++.+.+......+ .|.-=.|-.
T Consensus 47 ~~~~VvIiDl~n~~~~~R-rpi~Ad----sAIMn-P~~~ViALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis 116 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIR-RPISAD----SAIMN-PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWIS 116 (365)
T ss_dssp TEEEEEEEETTSTTSCEE-EECCCS----EEEEC-SSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CEEEEEECS
T ss_pred CCCEEEEEECCCCCCccc-cccccc----eeeeC-CCccEEEEec-CCeEEEechHHhhhhcceecCC---ccEEEEecC
Confidence 344788899987665421 112222 22335 5556565554 6789999999999888777653 565556655
Q ss_pred CCCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCC--CCCcEEEEEEccCCCEEEEEec-------CCe
Q 012699 247 VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV-------DGM 316 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-------dg~ 316 (458)
+..+-+.+. . .|.-|++.. ..+.+.+.... ....|.....+++.++++..+- .|.
T Consensus 117 ~~~L~lVT~-t--------------aVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~ 181 (365)
T 2xzh_A 117 LNTVALVTD-N--------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA 181 (365)
T ss_dssp SSEEEEEES-S--------------EEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE
T ss_pred CCeEEEEcC-C--------------cEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCcccee
Confidence 544433333 2 999999974 45556654322 1346788888999998775432 478
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcC--CC-CEEEEecC---CCeEEEEeccCC---CeeEEeecCCcccCCCCCCC
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGP--DE-TSIFSLGS---DGKIIEWSLQNQ---GQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~ 387 (458)
+.+|..+. +.-+.+.+|...-..+.+.- .. ..++.+.. .+++.+-++... ..........-+..++....
T Consensus 182 mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~D 260 (365)
T 2xzh_A 182 MQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 260 (365)
T ss_dssp EEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTC
T ss_pred EEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCC
Confidence 89999874 34556677755443333321 11 12333222 258999998543 11221222223445556677
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
..-++..|+.-..++..+.-|.+++||++++..+..-.--.++|..-+-+....=++.....|.|.
T Consensus 261 FPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 261 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred ceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 888999999999999999999999999999876554443344444444333323333344555544
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.43 E-value=0.00015 Score=62.25 Aligned_cols=219 Identities=11% Similarity=0.159 Sum_probs=131.7
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeee-ccC----CCCCCceeeeee---cCCCCeEEEeecccCCCCcce
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCD-LNT----TDAFPSVLDLKC---SPVEPIFVSAAASRRYGSSNI 265 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~----~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~ 265 (458)
..+..|++.++.++++.-..++|..||...+..... +.. ......+..+.+ .|++.++++..........-.
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 356789855676666666899999999986654333 221 111124678999 688777765331100000000
Q ss_pred eeccceeEEEEECC---CCceeEEeecCC-----------CCCcEEEEEEccCCCEEEEEecC-CeEEEEeCCCCceeee
Q 012699 266 YSWGFASLTVWNMK---TWKAMTVLPLGE-----------DPPAITSLCFNHNGKILAASAVD-GMIHMFDMSAGLQITG 330 (458)
Q Consensus 266 ~~~~~g~i~i~d~~---~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~ 330 (458)
...+...+..||+. +++......+.. .......++..++|+..++++.. +.|..++.... .+..
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 11223589999999 788777665431 12348899999999999999888 88888887643 3332
Q ss_pred ee--C----CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCee-EEeecCCcccCCCCCCCceeE-EEEccCCCEEE
Q 012699 331 WP--A----HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQV-LWTRNCSRFCDPESSKSCRHE-MALDVNGRRLL 402 (458)
Q Consensus 331 ~~--~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~ 402 (458)
+. . .....+.|+++|+|+.|++....|.+..+|+...... .... +. ........... +..-.+|+.|+
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~---~~-G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVK---IN-GDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECE---ES-SCCCCCTTEEEEEEEEETTEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeeccc---cc-CCcccccCcccccccccCCEEEE
Confidence 21 1 1123668999999998888877999999999843210 1000 00 00011122333 34445888855
Q ss_pred EEe-CCccEEEEEccC
Q 012699 403 VTS-GSVRAPIYQVRG 417 (458)
Q Consensus 403 ~~~-~~~~i~i~~~~~ 417 (458)
++. ..+.+.+.+.+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 554 456566665544
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.00028 Score=64.80 Aligned_cols=252 Identities=6% Similarity=-0.028 Sum_probs=140.0
Q ss_pred CeEEEEeCCC-CCEEEEE-eCCCcEEEEecCCCCCCCcccccc-CCCceEEEEE-------ecCCCeEEEEEcCCC-c--
Q 012699 149 PISCCRFSSS-GNNIASA-SVDGTVRIWTYDSSTPASRNATIY-CGTEIMSLEW-------ECKSDRLLLIGTADG-G-- 215 (458)
Q Consensus 149 ~v~~~~~~~~-~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~-------~~~~~~~l~~~~~dg-~-- 215 (458)
....|+|+|. ...|+.+ ...+.|++.|+.++.......... .......++| + +++..|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence 4668999983 4445444 444678888887765432111101 1235789999 8 5666555554443 2
Q ss_pred ----EEEEEcCC-Ccee-----eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC------
Q 012699 216 ----IKAWNVDA-KRVV-----CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK------ 279 (458)
Q Consensus 216 ----i~~wd~~~-~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~------ 279 (458)
+.+++... +... ..+.. ......++++|++..|+.+.... +.|..+|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~------------g~V~r~d~~~~~~~~ 283 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEK------------GQVFRLDLVDYFKTI 283 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTT------------TEEEEECHHHHHHHH
T ss_pred cCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCC------------CEEEEEecccccccc
Confidence 55665443 2221 11211 12456788899666555544433 589999987
Q ss_pred -CCce-----------e-EEeecCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCC--Cce--eeeeeC------CC
Q 012699 280 -TWKA-----------M-TVLPLGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSA--GLQ--ITGWPA------HD 335 (458)
Q Consensus 280 -~~~~-----------~-~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~--~~~--~~~~~~------~~ 335 (458)
++.. . ..+... .......++|+|+|++|+.+ +....|+.++... +.. ...+-+ ..
T Consensus 284 ~tg~~~tp~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~ 362 (496)
T 3kya_A 284 KNGGSWDPIVKNNPNTFKQLFTIA-DPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYR 362 (496)
T ss_dssp HTTCCCCCBGGGCTTTEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCB
T ss_pred cCceeecccccccccccceeEecC-CCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCccc
Confidence 4443 1 223322 22345789999999965555 4567888866532 221 011211 10
Q ss_pred ---------CCeE-EEEEc-------CCCCEEEEecCCCeEEEEeccCCCeeEEeecC-Cc--------c------cCCC
Q 012699 336 ---------SAIS-SILFG-------PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNC-SR--------F------CDPE 383 (458)
Q Consensus 336 ---------~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~--------~------~~~~ 383 (458)
.... .++.. +++.++++=.....|+.++. ++ .+....-. .. . ....
T Consensus 363 DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~ 440 (496)
T 3kya_A 363 DDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREV 440 (496)
T ss_dssp CCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTT
T ss_pred CCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhh
Confidence 1233 44554 45666666667888999984 33 32222111 00 0 0111
Q ss_pred CCCCceeEEEEccC-CCEEEEEeCCccEEEEEccCCC
Q 012699 384 SSKSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 384 ~~~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
..-..+..++++++ |.++++=..+.+|+.++++...
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 12345788999997 6655555567899999987654
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.42 E-value=0.00026 Score=61.76 Aligned_cols=220 Identities=9% Similarity=0.043 Sum_probs=131.1
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeE-EeecCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMT-VLPLGE 291 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~-~~~~~~ 291 (458)
...|+..+++.......+... .......+.|.+.+..++.+.... +.|..+++....... .+. .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~------------~~I~r~~~~g~~~~~~~~~--~ 76 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSE------------EAIKRTEFNKTESVQNVVV--S 76 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTT------------TEEEEEETTSSSCCCEEEE--E
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCC------------CcEEEEEccCCCceEEEEc--C
Confidence 457888998876411111111 113466888988766665554433 489999987654221 221 1
Q ss_pred CCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEec--CCCeEEEEeccCCC
Q 012699 292 DPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLG--SDGKIIEWSLQNQG 368 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 368 (458)
.......+++.+.+..| ++-...+.|.++++........+.........+++.|.+..|+... ..+.|...++....
T Consensus 77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 156 (318)
T ss_dssp CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 11235678998755444 4445567899999875433333334445678999999655665554 25778888876432
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEec
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 447 (458)
...... ..-.....++++|++..|+.+.. .+.|..+++++........+.......+++.. +.++.+-.
T Consensus 157 ~~~~~~---------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~ 226 (318)
T 3sov_A 157 RFIIIN---------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDW 226 (318)
T ss_dssp CEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEET
T ss_pred eEEEEE---------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEec
Confidence 211110 11234689999998887777764 57899999986543222222345567777753 34555555
Q ss_pred CCCcEEEEeC
Q 012699 448 ADHSVQVMSL 457 (458)
Q Consensus 448 ~dg~v~iw~l 457 (458)
..+.|..++.
T Consensus 227 ~~~~V~~~~~ 236 (318)
T 3sov_A 227 STHSILACNK 236 (318)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEEC
Confidence 5667776664
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.40 E-value=5e-06 Score=81.03 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=124.5
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC----CceeeeccCCCCCCceeeee
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA----KRVVCDLNTTDAFPSVLDLK 243 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~~~~~~~v~~~~ 243 (458)
.+.|+..++.+..... .......+..++|++..+.++++-...+.|+.+++.+ ......+.. .......++
T Consensus 385 ~~~I~~id~~~~~~~~---~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS---LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC---CSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--CC--CCCEE
T ss_pred ccceEEEeCCCCccee---eeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--CCCCcceEE
Confidence 4577777776654332 1222345678899855666666656678999999875 222111111 112355677
Q ss_pred ecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEEEEe
Q 012699 244 CSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIHMFD 321 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~v~d 321 (458)
+.+.+..|+.+.... +.|.++++........+. ........++++|.+.+|+.... .+.|.+++
T Consensus 460 vD~~~g~LY~tD~~~------------~~I~v~d~dg~~~~~l~~--~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVL------------GTVSVADTKGVKRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp CCCSSSBCEECCTTT------------SCEEEEBSSSCCEEEECC--CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred EEeeCCcEEEEeccC------------CeEEEEecCCCceEEEEe--CCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 775554444433222 489999987654433332 22233577899997665655443 26788888
Q ss_pred CCCCceeeeeeCCCCCeEEEEEcCCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 322 MSAGLQITGWPAHDSAISSILFGPDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
+........+...-...+.|+|+|++..| ++-+..+.|..+++......... . ..........+++..+ .+
T Consensus 526 ~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~-~------~~~~~~~P~glavd~~-~l 597 (699)
T 1n7d_A 526 LNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL-E------DEKRLAHPFSLAVFED-KV 597 (699)
T ss_dssp SSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC-C------CSSSCSSCCCCEEETT-EE
T ss_pred CCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE-e------cCCcCCCceEeEEECC-EE
Confidence 76432221112223346789999875544 45556778999998743222211 1 0111123445566543 34
Q ss_pred EEEEeCCccEEEEEccCCCc
Q 012699 401 LLVTSGSVRAPIYQVRGHAS 420 (458)
Q Consensus 401 l~~~~~~~~i~i~~~~~~~~ 420 (458)
+.+....++|..++..+++.
T Consensus 598 ywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEECSTTTCEEEEETTTEEE
T ss_pred EEEeCCCCeEEEEEccCCCc
Confidence 44444568899998765543
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.39 E-value=0.0018 Score=62.15 Aligned_cols=228 Identities=6% Similarity=-0.020 Sum_probs=142.1
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCcee
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVL 240 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~ 240 (458)
+|+.+ ....|+..++++..... ......-..+..++|++.++.++++-..++.|..++++.......+.... ....
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~--~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL--DYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC--SCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC--CCcc
Confidence 44443 45678988987654321 11222234678999997777777777788999999987654433333221 3567
Q ss_pred eeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec--CCeEE
Q 012699 241 DLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV--DGMIH 318 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~ 318 (458)
.+++.+.+..++.+.... +.|.+.++........+. ..-.....++++|...+|+.... .+.|.
T Consensus 84 GlAvD~~~~~LY~tD~~~------------~~I~v~~~dG~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGT------------NRIEVSKLDGQHRQVLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKID 149 (628)
T ss_dssp EEEEETTTTEEEEEETTT------------TEEEEEETTSTTCEEEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEEeCCCEEEEEECCC------------CEEEEEecCCCcEEEEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEE
Confidence 888887766665554433 589999987644332221 23345789999996666666552 56888
Q ss_pred EEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccC
Q 012699 319 MFDMSAGLQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVN 397 (458)
Q Consensus 319 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 397 (458)
..++..... ..+-..-.....|++++++..|+.+ ...+.|...|+......... .....+..+++..
T Consensus 150 r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~----------~~l~~P~glav~~- 217 (628)
T 4a0p_A 150 RAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIA----------DDLPHPFGLTQYQ- 217 (628)
T ss_dssp EEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE----------ECCSCEEEEEEET-
T ss_pred EEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEee----------ccCCCceEEEEEC-
Confidence 888764433 3333344567899999976666655 45778999998754332111 1122355677754
Q ss_pred CCEEEEEe-CCccEEEEEccCCC
Q 012699 398 GRRLLVTS-GSVRAPIYQVRGHA 419 (458)
Q Consensus 398 g~~l~~~~-~~~~i~i~~~~~~~ 419 (458)
..|+.+. ..+.|...|..++.
T Consensus 218 -~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 218 -DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp -TEEEEEETTTTEEEEEETTTCC
T ss_pred -CEEEEecCCCCEEEEEECCCCC
Confidence 3555554 46788888865554
No 295
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.33 E-value=0.0014 Score=58.12 Aligned_cols=260 Identities=12% Similarity=0.136 Sum_probs=158.2
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV 247 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (458)
+..|.|-|+..+....+ ..... -+.-.+ |..+.++.-. ..++.++|+++...+......+ .|.-=.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~r-rpi~A----dsAIMn-P~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIR-RPISA----DSAIMN-PASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEE-EECCC----SEEEEC-SSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEET
T ss_pred CCeEEEEECCCCCccee-ccccc----ceeeeC-CCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCC
Confidence 34788889887655421 11111 223345 4455555543 6799999999999888777654 3444455444
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCC--CCCcEEEEEEccCCCEEEEEec-------CCeE
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGE--DPPAITSLCFNHNGKILAASAV-------DGMI 317 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-------dg~i 317 (458)
..+-+.+ .. .|.-|++.. ..+.+.+.... ....|.....+++.++++..+- .|.+
T Consensus 117 ~~l~lVT-~t--------------aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~m 181 (494)
T 1bpo_A 117 NTVALVT-DN--------------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (494)
T ss_dssp TEEEEEC-SS--------------EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEc-CC--------------eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceE
Confidence 4333333 32 899999974 35556664322 1346888888999998875432 4788
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEEEcCCC---CEEEEecC---CCeEEEEeccCC---CeeEEeecCCcccCCCCCCCc
Q 012699 318 HMFDMSAGLQITGWPAHDSAISSILFGPDE---TSIFSLGS---DGKIIEWSLQNQ---GQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 388 (458)
.+|..+.+ .-+.+.+|......+...-+. ..++.+.. .+++.+.++... ..........-+..++.....
T Consensus 182 QLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DF 260 (494)
T 1bpo_A 182 QLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (494)
T ss_dssp EEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCC
T ss_pred EEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCc
Confidence 99998743 455667776655444432111 23333332 378999998643 122222222234455566778
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
..++..|+.-..++..+.-|.+++||++++..+..-.-...+|..-+-+....=++.....|.|.
T Consensus 261 Pvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred eeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 88999999999999999999999999999876554443344454444443333344444555544
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.30 E-value=0.00065 Score=58.37 Aligned_cols=203 Identities=10% Similarity=0.111 Sum_probs=127.4
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----C--CCcEEEEEE---ccCCCE
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----D--PPAITSLCF---NHNGKI 307 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~--~~~i~~~~~---~~~~~~ 307 (458)
....++.|++....+..++.-. |.|..||...+..... .... . ...+..+.| .|++++
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~------------g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL 79 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYK------------GRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRL 79 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTT------------TEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred cCCcCccCcCCCCEEEEEeccC------------CEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcE
Confidence 3456788988777777666443 6999999986554443 3332 1 114688999 688877
Q ss_pred EEEEec-------------CCeEEEEeCC---CCceeeeeeC-------------CCCCeEEEEEcCCCCEEEEecCC-C
Q 012699 308 LAASAV-------------DGMIHMFDMS---AGLQITGWPA-------------HDSAISSILFGPDETSIFSLGSD-G 357 (458)
Q Consensus 308 l~~~~~-------------dg~i~v~d~~---~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d-g 357 (458)
+++... +..|..||+. +++.+....- -......++..++|+..++++.- +
T Consensus 80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 776432 5789999999 7776654431 11347899999999999988887 7
Q ss_pred eEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-ccccC--CC---CCcE
Q 012699 358 KIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-GMRTL--PH---GAAI 431 (458)
Q Consensus 358 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-~~~~~--~h---~~~v 431 (458)
.|...+........+.... .........+.++++|+|+.|++....+.+..+|+..... ..... +. -...
T Consensus 160 ~I~rV~pdG~~~~~~~~~~----~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~ 235 (334)
T 2p9w_A 160 AIARVSADGKTVSTFAWES----GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGT 235 (334)
T ss_dssp EEEEECTTSCCEEEEEECC----CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTE
T ss_pred eEEEEeCCCCEEeeeeecC----CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCc
Confidence 7776666543222222111 0112234578899999999999888899999999884322 01111 21 1223
Q ss_pred EEE-EECCCCCe-EEEecCCCcEEEEe
Q 012699 432 TTV-DWHPTLPM-FLTGSADHSVQVMS 456 (458)
Q Consensus 432 ~~~-~~~~~~~~-l~s~~~dg~v~iw~ 456 (458)
..+ .--.+|+. |++.+..+.+.+.+
T Consensus 236 dgilp~~~~G~vllV~~~~~~~~~l~S 262 (334)
T 2p9w_A 236 EKIVTVPVGNESVLVGARAPYAISFRS 262 (334)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEC
T ss_pred ccccccccCCEEEEEEcCCCCEEEEEC
Confidence 343 33346675 55555566655543
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.20 E-value=0.0051 Score=59.05 Aligned_cols=298 Identities=8% Similarity=-0.014 Sum_probs=160.7
Q ss_pred CCCCeEEEEeCCCCCEEEEE-eCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 146 HTSPISCCRFSSSGNNIASA-SVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 146 h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.-.....|+++++++.|+.+ ...+.|...+++..... ...........+++. . +.++++-...+.|...|..++
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~~~~l~~P~glav~-~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VIADDLPHPFGLTQY-Q-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECCSCEEEEEEE-T-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---EeeccCCCceEEEEE-C-CEEEEecCCCCEEEEEECCCC
Confidence 34567899999987666555 45678999998764431 122223445678876 3 566666666888999997766
Q ss_pred ceeeeccCCCCC----------------------Cceeeeeec-CCCCeEEEeec------ccC---CCCcceeecccee
Q 012699 225 RVVCDLNTTDAF----------------------PSVLDLKCS-PVEPIFVSAAA------SRR---YGSSNIYSWGFAS 272 (458)
Q Consensus 225 ~~~~~~~~~~~~----------------------~~v~~~~~~-~~~~~~~~~~~------~~~---~~~~~~~~~~~g~ 272 (458)
+....+...... ..+..++.. |.+.+-..+.. ++. ....++.......
T Consensus 239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~ 318 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA 318 (628)
T ss_dssp CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTE
T ss_pred CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccce
Confidence 543333211100 011111111 11211111110 000 0011111122234
Q ss_pred EEEEECCCCce-eEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCceeeeeeC------CCCCeEEEEEc
Q 012699 273 LTVWNMKTWKA-MTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGLQITGWPA------HDSAISSILFG 344 (458)
Q Consensus 273 i~i~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~------~~~~v~~~~~~ 344 (458)
|+-..+..... ...+... ....+..++|++.+..|+... ..+.|+.+++........+.. ....+..+++.
T Consensus 319 i~~i~l~~~~~~~~~l~~~-~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD 397 (628)
T 4a0p_A 319 INRMVIDEQQSPDIILPIH-SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSID 397 (628)
T ss_dssp EEEECCCTTCCCCEECCCT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEE
T ss_pred EEEEecccccCceEEEEeh-hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEee
Confidence 54444433221 1112221 224578899999766666654 357888888764433223322 23467899999
Q ss_pred CCCCEE-EEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-Cc--cEEEEEccCCCc
Q 012699 345 PDETSI-FSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SV--RAPIYQVRGHAS 420 (458)
Q Consensus 345 ~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~--~i~i~~~~~~~~ 420 (458)
..++.| ++-+..+.|.+.++..... ..... .....+..+++.|...+|+.+.. .. .|...++++...
T Consensus 398 ~~~~nLY~td~~~~~I~v~~~~G~~~-~~l~~--------~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~ 468 (628)
T 4a0p_A 398 IYSRYIYWTCEATNVINVTRLDGRSV-GVVLK--------GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER 468 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCEE-EEEEE--------CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred ccCCeEEEEcCCCCEEEEEECCCCeE-EEEEe--------CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence 876655 4666688899999864321 11110 12234789999995555554433 22 577777766543
Q ss_pred ccccCCCCCcEEEEEECCCCCeEEEec-CCCcEEEEeCC
Q 012699 421 GMRTLPHGAAITTVDWHPTLPMFLTGS-ADHSVQVMSLS 458 (458)
Q Consensus 421 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~dg~v~iw~l~ 458 (458)
.......-..++.++++++++.|+.+. ..+.|...+++
T Consensus 469 ~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 222222345679999999877666554 35677776653
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.19 E-value=0.00054 Score=59.42 Aligned_cols=191 Identities=13% Similarity=0.254 Sum_probs=117.5
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC----CCe--EEEeecccCCCCcceeeccceeEEEEE
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV----EPI--FVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
..+++.....+-+.+||+ .|+.+..+.. ..+..+..-|. ++. ++.++... .+.++|.+|+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----g~~nnVD~r~~~~l~g~~~dla~as~R~---------~~~n~l~vf~ 105 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT----GKLNNVDIRYDFPLNGKKVDIAAASNRS---------EGKNTIEIYA 105 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC----SCEEEEEEEEEEEETTEEEEEEEEEECS---------TTCCEEEEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC----CCcccEEEecccccCCceEeEEEEeCCC---------CCCCeEEEEE
Confidence 345666667789999999 7888777653 34555555552 221 22222211 0015999996
Q ss_pred C--CCCceeEEeec---C--CCCCcEEEEEE--ccC-CC-EEEEEecCCeEEEEeCC-------CCceeeeeeCCCCCeE
Q 012699 278 M--KTWKAMTVLPL---G--EDPPAITSLCF--NHN-GK-ILAASAVDGMIHMFDMS-------AGLQITGWPAHDSAIS 339 (458)
Q Consensus 278 ~--~~~~~~~~~~~---~--~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~v~d~~-------~~~~~~~~~~~~~~v~ 339 (458)
+ .++. +..+.. . .....+..+++ +|. ++ ++++...+|.+..|++. +.+.++++.. .+.+.
T Consensus 106 iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E 183 (355)
T 3amr_A 106 IDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTE 183 (355)
T ss_dssp ECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred ECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence 6 3333 333311 0 11134556777 774 44 68888889999999983 3456777765 45788
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeccCCC----eeEEeecCCcccCCCCCCCceeEEEE--ccCCC-EEEEEe-CCccEE
Q 012699 340 SILFGPDETSIFSLGSDGKIIEWSLQNQG----QVLWTRNCSRFCDPESSKSCRHEMAL--DVNGR-RLLVTS-GSVRAP 411 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~l~~~~-~~~~i~ 411 (458)
.++..+....|+.+-.+.-|..++.+... ..+... ........+..|++ .++++ +|++++ .+++..
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~------~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~ 257 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA------DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA 257 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB------SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe------cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence 89999888899999998776666654221 111111 11122335777777 56666 777777 567999
Q ss_pred EEEcc
Q 012699 412 IYQVR 416 (458)
Q Consensus 412 i~~~~ 416 (458)
+||..
T Consensus 258 Vydr~ 262 (355)
T 3amr_A 258 IYDRQ 262 (355)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99996
No 299
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.16 E-value=0.0029 Score=56.16 Aligned_cols=248 Identities=10% Similarity=0.064 Sum_probs=126.0
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCc--c-ccccCCCceEEEEEecC---CCeEEEEEcCC-----CcE
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASR--N-ATIYCGTEIMSLEWECK---SDRLLLIGTAD-----GGI 216 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~-~~~~~~~~v~~~~~~~~---~~~~l~~~~~d-----g~i 216 (458)
..-..++|.|+|+++++ ..+|.|++++ .++.... . ...........++|+|. ++.+.++-... +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34679999999985555 5669999988 3321100 0 01112356789999954 35554444432 578
Q ss_pred EEEEcCCCc-----ee-eeccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC--------
Q 012699 217 KAWNVDAKR-----VV-CDLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-------- 281 (458)
Q Consensus 217 ~~wd~~~~~-----~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-------- 281 (458)
..++...+. .+ ..+.. .........++|.|++.++++.+.........-.....|.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888877542 11 11221 1111234689999999877765432110000000112256666666531
Q ss_pred ----ceeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCCe--------EEEEeCCC----------------Cceeeeee
Q 012699 282 ----KAMTVLPLGEDPPAITSLCFNH-NGKILAASAVDGM--------IHMFDMSA----------------GLQITGWP 332 (458)
Q Consensus 282 ----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~--------i~v~d~~~----------------~~~~~~~~ 332 (458)
.....+.. ++ .....++|+| ++.++++-..... |.+..... ..++..+.
T Consensus 188 ~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 188 GRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 01111111 12 2356789999 5665554332222 33332111 01222332
Q ss_pred CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 333 AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 333 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
+......++| .+|..+++.-..+.|...++..............+. .....+..+++.|||.++++..
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence 2234567777 567676666667788888776543211000000111 1124578999999997766554
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.15 E-value=0.0049 Score=60.70 Aligned_cols=217 Identities=13% Similarity=0.060 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC----ceeEEee
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW----KAMTVLP 288 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~----~~~~~~~ 288 (458)
...|+..++............ ..+..+++.+....++.+.... +.|+.+++... .....+
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~~~---~~~~gl~~d~~~~~lY~sD~~~------------~~I~~~~l~g~~~~~~~~~vi- 466 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVI- 466 (791)
T ss_dssp BSSEEEECTTSCCCEEEECSC---SSEEEEEEETTTTEEEEEETTT------------TEEEEEEC--------CEEEE-
T ss_pred ccceeEeeccCCcceeeecCC---CceEEEeecccCCeeEEeeccc------------eeEEEEeccCCCCCcceeEEE-
Confidence 356888888766544333322 4678899998666665554433 48888888753 222222
Q ss_pred cCCCCCcEEEEEEccCCCEEEEE-ecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEecc
Q 012699 289 LGEDPPAITSLCFNHNGKILAAS-AVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQ 365 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~ 365 (458)
.........|++.+.++.|+.. ...+.|.+.++........+.........|++.|.+.+|+.... .+.|...++.
T Consensus 467 -~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 467 -SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp -CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred -ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 2223446789999877655544 45789999998755443333344456889999997656655543 3678888887
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCcccccCC--CCCcEEEEEECCCCCe
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGMRTLP--HGAAITTVDWHPTLPM 442 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~ 442 (458)
......... .....+..|++++.+..|+.+.. .+.|...++.+......... .-....+|++..+ .+
T Consensus 546 G~~~~~lv~---------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~l 615 (791)
T 3m0c_C 546 GVDIYSLVT---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KV 615 (791)
T ss_dssp SCCEEEEEC---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EE
T ss_pred CCceEEEEe---------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EE
Confidence 543322111 12245789999988888877754 46899999877643322222 2234556666432 34
Q ss_pred EEEecCCCcEEEEe
Q 012699 443 FLTGSADHSVQVMS 456 (458)
Q Consensus 443 l~s~~~dg~v~iw~ 456 (458)
+++-...+.|...+
T Consensus 616 YwtD~~~~~I~~~d 629 (791)
T 3m0c_C 616 FWTDIINEAIFSAN 629 (791)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEe
Confidence 44444455665544
No 301
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=98.13 E-value=0.00051 Score=60.78 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=95.8
Q ss_pred eEEEEECCCCceeEEeecCC--CCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc------------eeeeeeC----
Q 012699 272 SLTVWNMKTWKAMTVLPLGE--DPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL------------QITGWPA---- 333 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~~---- 333 (458)
.||.-++......+.+.... ....+..+..+|+|++||..+ +..|.|..+..+. ..+.+.-
T Consensus 42 ~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~ 120 (452)
T 3pbp_A 42 IIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE 120 (452)
T ss_dssp EEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC
T ss_pred EEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcc
Confidence 78887877555566666542 223578899999999999875 5579998887321 1122321
Q ss_pred --CCCCeEEEEEcC---CCCEEEEecCCCeEEEEeccC-CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe--
Q 012699 334 --HDSAISSILFGP---DETSIFSLGSDGKIIEWSLQN-QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-- 405 (458)
Q Consensus 334 --~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-- 405 (458)
...+|..+.|+| .+..|++-..|+.|++||+.. ...+..................+.+++|.+++-.|.+.+
T Consensus 121 ~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t 200 (452)
T 3pbp_A 121 VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTT 200 (452)
T ss_dssp --CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECT
T ss_pred cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecC
Confidence 256899999999 456899999999999999986 223332211111122333447789999999988787755
Q ss_pred CCccEEEE
Q 012699 406 GSVRAPIY 413 (458)
Q Consensus 406 ~~~~i~i~ 413 (458)
..|.|+-.
T Consensus 201 ~~GDIYAl 208 (452)
T 3pbp_A 201 EGGDIFAF 208 (452)
T ss_dssp TSCEEEEE
T ss_pred CCCCEEEE
Confidence 77877644
No 302
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.10 E-value=0.014 Score=60.25 Aligned_cols=292 Identities=13% Similarity=0.143 Sum_probs=146.7
Q ss_pred CCCeEEEEeCCC------CCEEEEEeC-CCcEEEEecCCCCCCCccccccCCCceEEEEEec-CCCeEEEEEcCCCcEEE
Q 012699 147 TSPISCCRFSSS------GNNIASASV-DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWEC-KSDRLLLIGTADGGIKA 218 (458)
Q Consensus 147 ~~~v~~~~~~~~------~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~ 218 (458)
...|.|+++.|. +++++.|.. |++++|+++.+.+...... ........++.+.. .+..+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~-L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM-LGGEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE-CCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE-CCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 567999999863 368999986 9999999998654432211 11122334444331 24567889999998866
Q ss_pred EEcC--CCceeee--ccCCCCCCcee----------eeeecCCCCeEEEeecc-------------------cCCCCcce
Q 012699 219 WNVD--AKRVVCD--LNTTDAFPSVL----------DLKCSPVEPIFVSAAAS-------------------RRYGSSNI 265 (458)
Q Consensus 219 wd~~--~~~~~~~--~~~~~~~~~v~----------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~ 265 (458)
+.++ ++..... ..... .++. ++-...+.++++..... .......+
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~--~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGT--QPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCS--SCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEEcCCCCccccceeEEcCC--CceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcE
Confidence 6554 4433211 11010 1111 11111111222111110 00011112
Q ss_pred eeccceeEEEEECCCCce--eEEeecCCCCCcEEEEEEccCCCEEEEEecC-----------------------------
Q 012699 266 YSWGFASLTVWNMKTWKA--MTVLPLGEDPPAITSLCFNHNGKILAASAVD----------------------------- 314 (458)
Q Consensus 266 ~~~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------------------- 314 (458)
....++.++|..+...+. .+.+++. ..+..++++|+.+.++++..+
T Consensus 710 v~~~~~~LrI~~i~~~~~~~~~~ipL~---~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1158)
T 3ei3_A 710 ALANNSTLTIGTIDEIQKLHIRTVPLY---ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSS 786 (1158)
T ss_dssp EEECSSCEEEEEECCSSSEEEEEEECS---SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCC
T ss_pred EEEcCCceEEEEecccCCeeEEEEeCC---CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccc
Confidence 222334577776654332 3334433 357889999987766554321
Q ss_pred --------------------CeEEEEeCCCCceeeeeeCC-CCCeEEEE---EcCC-CCEEEEec----------CCCeE
Q 012699 315 --------------------GMIHMFDMSAGLQITGWPAH-DSAISSIL---FGPD-ETSIFSLG----------SDGKI 359 (458)
Q Consensus 315 --------------------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~---~~~~-~~~l~~~~----------~dg~i 359 (458)
+.|++.|..+.+.+..+.-. ...+.+++ |..+ ..+|+.|+ ..|.|
T Consensus 787 ~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri 866 (1158)
T 3ei3_A 787 KLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI 866 (1158)
T ss_dssp CCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred ccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence 23666776666655554422 23344444 3322 46888775 35789
Q ss_pred EEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCC
Q 012699 360 IEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPT 439 (458)
Q Consensus 360 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~ 439 (458)
.+|++.+. +...... ...++.+++++-- +| +|++|- ...+++|++...+.+.....+-..|..+.....
T Consensus 867 ~vf~v~~~-kL~lv~~-------~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~ 935 (1158)
T 3ei3_A 867 VVFQYSDG-KLQTVAE-------KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTK 935 (1158)
T ss_dssp EEEEEETT-EEEEEEE-------EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEE
T ss_pred EEEEEECC-EEEEEEE-------EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEecc
Confidence 99999743 2211111 1234556666533 45 444444 367999999765433211111111222222224
Q ss_pred CCeEEEecCCCcEEEE
Q 012699 440 LPMFLTGSADHSVQVM 455 (458)
Q Consensus 440 ~~~l~s~~~dg~v~iw 455 (458)
+.+++.|..-..|.+.
T Consensus 936 ~~~I~vgD~~~Sv~~~ 951 (1158)
T 3ei3_A 936 GDFILVGDLMRSVLLL 951 (1158)
T ss_dssp TTEEEEEESSBCEEEE
T ss_pred CCEEEEEEhhheEEEE
Confidence 5667777655555543
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.08 E-value=4.9e-05 Score=74.12 Aligned_cols=218 Identities=13% Similarity=0.058 Sum_probs=125.4
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC----CceeEEee
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT----WKAMTVLP 288 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~----~~~~~~~~ 288 (458)
...|+..++.+......+... ..+..++|.+.+..|+.+.... +.|+.+++.. ......+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~---~~p~gla~d~~~~~Ly~sD~~~------------~~I~~~~~~g~~~~~~~~~~i~ 449 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNL---RNVVALDTEVASNRIYWSDLSQ------------RMICSTQLDRAHGVSSYDTVIS 449 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCC---TTCCCCEEETTTTEEEECCTTT------------TSBEEEESCCCCC-CCCCCBCC
T ss_pred ccceEEEeCCCCcceeeeccC---cceEEEccccccCeEEEEecCC------------CeEEEEecCCCCCCcceEEEEe
Confidence 357888888876655443332 4567889998777776665443 4888888875 22222111
Q ss_pred cCCCCCcEEEEEEccCCCEE-EEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-C-CeEEEEecc
Q 012699 289 LGEDPPAITSLCFNHNGKIL-AASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-D-GKIIEWSLQ 365 (458)
Q Consensus 289 ~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~iwd~~ 365 (458)
........+++.+.+..| ++-...+.|.++++........+.........|++.|.+.+|+.... . +.|..+++.
T Consensus 450 --~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 450 --RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp --SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred --CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 111234567888654444 44445678999998754433333322345678999996655555443 2 678777775
Q ss_pred CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe-CCccEEEEEccCCCcccccC--CCCCcEEEEEECCCCCe
Q 012699 366 NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS-GSVRAPIYQVRGHASGMRTL--PHGAAITTVDWHPTLPM 442 (458)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-~~~~i~i~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~ 442 (458)
........ .........|+++|++..|+++. ..++|..+++.+........ ........|++..+ .+
T Consensus 528 G~~~~~l~---------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~l 597 (699)
T 1n7d_A 528 GVDIYSLV---------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KV 597 (699)
T ss_dssp SCCCCEES---------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EE
T ss_pred CCCeeEEE---------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EE
Confidence 43221110 01123467899999877776665 45789999997643222111 11233445566543 45
Q ss_pred EEEecCCCcEEEEeC
Q 012699 443 FLTGSADHSVQVMSL 457 (458)
Q Consensus 443 l~s~~~dg~v~iw~l 457 (458)
+++....+.|..++.
T Consensus 598 ywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 598 FWTDIINEAIFSANR 612 (699)
T ss_dssp EEECSTTTCEEEEET
T ss_pred EEEeCCCCeEEEEEc
Confidence 556556677877763
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.08 E-value=0.0022 Score=55.47 Aligned_cols=235 Identities=11% Similarity=0.062 Sum_probs=117.7
Q ss_pred CCCEEEEEe-CC-----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-----CcEEEEEcCCCc-
Q 012699 158 SGNNIASAS-VD-----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-----GGIKAWNVDAKR- 225 (458)
Q Consensus 158 ~~~~l~s~~-~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~- 225 (458)
++..++.|+ .+ ..+.+||..+.+..... .......-.+++. .++.+++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLP-SITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCC-CCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 35778887665432111 1111111122222 356777777754 468999998876
Q ss_pred --eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc
Q 012699 226 --VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH 303 (458)
Q Consensus 226 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~ 303 (458)
....-..... .....+...++.+++.++.+... ....+.+||+.+.+-...-...........+.+
T Consensus 91 ~~W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 158 (301)
T 2vpj_A 91 GVWYSVAPMNVR--RGLAGATTLGDMIYVSGGFDGSR--------RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-- 158 (301)
T ss_dssp CCCEEECCCSSC--CBSCEEEEETTEEEEECCBCSSC--------BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--
T ss_pred CeeEECCCCCCC--ccceeEEEECCEEEEEcccCCCc--------ccceEEEEcCCCCeEEECCCCCCCcccceEEEE--
Confidence 4333222211 11111222256677777654311 014789999987665443332222112222222
Q ss_pred CCCEEEEEecC-----CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeE
Q 012699 304 NGKILAASAVD-----GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVL 371 (458)
Q Consensus 304 ~~~~l~~~~~d-----g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 371 (458)
+++.++.|+.+ ..+.+||+.+.+.... ++........+.+ +++.++.|+.+ ..+.+||+.+..-..
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 66677777654 4689999877644322 2211112223333 56677777764 468899987653211
Q ss_pred EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699 372 WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH 418 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~ 418 (458)
.. .. .........+ .-++++++.|+.+ ..+.+||+.+.
T Consensus 237 ---~~-~~---p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 237 ---VT-SM---TTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp ---EC-CC---SSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ---CC-CC---CCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 11 11 1111111222 2367777777654 45778887664
No 305
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.06 E-value=0.0096 Score=57.09 Aligned_cols=184 Identities=10% Similarity=0.090 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
+.|+..++.................+..+++.+.+..++.+.... +.|..+++........+. ...
T Consensus 326 ~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~------------~~I~r~~~~g~~~~~v~~--~~~ 391 (619)
T 3s94_A 326 TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV------------RAIRRSFIDGSGSQFVVT--AQI 391 (619)
T ss_dssp SCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT------------TEEEEEETTSCSCEEEEC--SSC
T ss_pred cceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC------------CeEEEEEcCCCccEEEEE--CCC
Confidence 456666766543221111111224567888888666555554332 488888887644433332 222
Q ss_pred CcEEEEEEccCCCEEE-EEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC--CCeEEEEeccCCCee
Q 012699 294 PAITSLCFNHNGKILA-ASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS--DGKIIEWSLQNQGQV 370 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 370 (458)
.....+++++.+..|+ +-+..+.|.+.++........+...-.....|++.|....|+.... ...|...++......
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~ 471 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV 471 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE
Confidence 3467889987555454 4445688999998754322222233456789999996445544432 356776666543222
Q ss_pred EEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc
Q 012699 371 LWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS 420 (458)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~ 420 (458)
... ...-..+..++++++++.|+.+.. .++|..+++++...
T Consensus 472 ~l~---------~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~ 513 (619)
T 3s94_A 472 VLV---------NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR 513 (619)
T ss_dssp EEE---------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred EEE---------eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce
Confidence 111 112345788999998888887765 47899999876543
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.05 E-value=0.0014 Score=56.76 Aligned_cols=230 Identities=11% Similarity=0.112 Sum_probs=114.5
Q ss_pred CCeEEEEEc-CC-----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEE
Q 012699 203 SDRLLLIGT-AD-----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVW 276 (458)
Q Consensus 203 ~~~~l~~~~-~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~ 276 (458)
++.+++.|+ .+ ..+.+||+.+++....-.... ..........++.+++.++.+... ....+.+|
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~~--------~~~~~~~~ 83 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITR--KRRYVASVSLHDRIYVIGGYDGRS--------RLSSVECL 83 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSC--------BCCCEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCCh--hhccccEEEECCEEEEEcCCCCCc--------cCceEEEE
Confidence 345666666 22 368899998876543222221 111122222356667777654210 11478999
Q ss_pred ECCCCc---eeEEeecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCC
Q 012699 277 NMKTWK---AMTVLPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPD 346 (458)
Q Consensus 277 d~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~ 346 (458)
|+.+.+ ....-.+.........+.+ +++.++.|+.+ ..+.+||+.+.+... .++.......++.+ +
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~ 159 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--S 159 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--T
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--C
Confidence 998866 3333222221112222222 56677777654 368899987754332 22221222222222 6
Q ss_pred CCEEEEecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEcc
Q 012699 347 ETSIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVR 416 (458)
Q Consensus 347 ~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~ 416 (458)
++.++.|+.+ ..+.+||+.+.. |.... ... ..... .++ ...++++++.|+.+ ..+.+||+.
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~---W~~~~-~~p---~~r~~-~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGH---WTNVT-PMA---TKRSG-AGV-ALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTE---EEEEC-CCS---SCCBS-CEE-EEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCc---EEeCC-CCC---ccccc-ceE-EEECCEEEEEeCCCCCcccceEEEEeCC
Confidence 6677777654 458889987652 21111 110 11111 112 22367777777654 468999987
Q ss_pred CCCcc--cccCCCCCcEEEEEECCCCCeEEEecCC-----CcEEEEeC
Q 012699 417 GHASG--MRTLPHGAAITTVDWHPTLPMFLTGSAD-----HSVQVMSL 457 (458)
Q Consensus 417 ~~~~~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~l 457 (458)
+..-. ............+.+ ++++++.|+.+ ..|.+||+
T Consensus 231 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 276 (301)
T 2vpj_A 231 TDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP 276 (301)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred CCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence 65311 111111111122222 67777888765 35667765
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.97 E-value=0.0048 Score=53.56 Aligned_cols=186 Identities=9% Similarity=0.163 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecC---CCe---EEEEEcC---CCcEEEEEcC--CCce
Q 012699 158 SGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECK---SDR---LLLIGTA---DGGIKAWNVD--AKRV 226 (458)
Q Consensus 158 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~---~l~~~~~---dg~i~~wd~~--~~~~ 226 (458)
...+++.....+-+.+||+ .++.+.. . ....+..+..-|. +++ ++++... +++|++|++. ++.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~---~-~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~- 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHS---Y-NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT- 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEE---E-CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEE---c-cCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-
Confidence 3455666667788999999 5554422 2 2245666665531 122 2333333 5789999773 443
Q ss_pred eeeccCC-----CCCCceeeeee--cCC-CC-eEEEeecccCCCCcceeeccceeEEEEECC-------CCceeEEeecC
Q 012699 227 VCDLNTT-----DAFPSVLDLKC--SPV-EP-IFVSAAASRRYGSSNIYSWGFASLTVWNMK-------TWKAMTVLPLG 290 (458)
Q Consensus 227 ~~~~~~~-----~~~~~v~~~~~--~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~-------~~~~~~~~~~~ 290 (458)
+..+... .....+..+++ +|. +. +++....+ |.+..|++. +.+.+..+.+.
T Consensus 113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-------------G~~~q~~l~~~~~g~~~~~lVR~f~lg 179 (355)
T 3amr_A 113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-------------GEFEQYELKADKNGYISGKKVRAFKMN 179 (355)
T ss_dssp EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-------------SEEEEEEEEECTTSCEEEEEEEEEECS
T ss_pred eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-------------CeEEEEEEEeCCCCcccceEEEEecCC
Confidence 3333211 11145666777 664 33 34444444 588888772 33556677654
Q ss_pred CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCC-----CCceeeeee-CC-CCCeEEEEE--cCCCC-EEEEec-CCCeE
Q 012699 291 EDPPAITSLCFNHNGKILAASAVDGMIHMFDMS-----AGLQITGWP-AH-DSAISSILF--GPDET-SIFSLG-SDGKI 359 (458)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~-~~-~~~v~~~~~--~~~~~-~l~~~~-~dg~i 359 (458)
..+..++..+....|+++-++.-|..|+.+ +++.+..+. ++ ...+..|++ .++++ +|++++ .++++
T Consensus 180 ---sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~ 256 (355)
T 3amr_A 180 ---SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSY 256 (355)
T ss_dssp ---SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred ---CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEE
Confidence 357889999988899999998878888865 244554442 22 236888888 45555 555555 57899
Q ss_pred EEEecc
Q 012699 360 IEWSLQ 365 (458)
Q Consensus 360 ~iwd~~ 365 (458)
.+||..
T Consensus 257 ~Vydr~ 262 (355)
T 3amr_A 257 AIYDRQ 262 (355)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999997
No 308
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.97 E-value=0.0027 Score=54.95 Aligned_cols=229 Identities=10% Similarity=0.088 Sum_probs=112.8
Q ss_pred CeEEEEEcCC----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699 204 DRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK 279 (458)
Q Consensus 204 ~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~ 279 (458)
+.+++.|+.+ ..+..||+.+++....-.... .........-++.+++.++.+... ....+.+||+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~--------~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPS--RRCRAGMVYMAGLVFAVGGFNGSL--------RVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEESCBCSSS--------BCCCEEEEETT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCc--ccccceEEEECCEEEEEeCcCCCc--------cccceEEECCC
Confidence 3455555543 357888888776443322111 111111122356677777654311 11378899998
Q ss_pred CCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC-----eEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEE
Q 012699 280 TWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG-----MIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFS 352 (458)
Q Consensus 280 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~ 352 (458)
+.+-...-...........+.+ +++.++.|+.++ .+.+||+.+.+.... ++........+.+ +++.++.
T Consensus 86 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 161 (302)
T 2xn4_A 86 KDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAV 161 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEE
Confidence 7665443322222112222222 566777777553 588899877543322 2211122222222 5666676
Q ss_pred ecCC-------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCCc
Q 012699 353 LGSD-------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHAS 420 (458)
Q Consensus 353 ~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~~ 420 (458)
|+.+ ..+.+||+.+..- .... ... ..... .+++ .-++++++.|+.+ ..+.+||+.+..-
T Consensus 162 GG~~~~~~~~~~~~~~yd~~~~~W---~~~~-~~p---~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 162 GGYDVASRQCLSTVECYNATTNEW---TYIA-EMS---TRRSG-AGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp CCEETTTTEECCCEEEEETTTTEE---EEEC-CCS---SCCBS-CEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred eCCCCCCCccccEEEEEeCCCCcE---EECC-CCc---ccccc-ccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 6643 3488888876422 1111 111 11111 1222 2367777777654 4688999876531
Q ss_pred c--cccCCCCCcEEEEEECCCCCeEEEecCCC-----cEEEEeC
Q 012699 421 G--MRTLPHGAAITTVDWHPTLPMFLTGSADH-----SVQVMSL 457 (458)
Q Consensus 421 ~--~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~l 457 (458)
. .........-..+. -++++++.|+.++ .+.+||+
T Consensus 233 ~~~~~~~~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~ 274 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNP 274 (302)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEET
T ss_pred eeCCCCCCccccCeEEE--ECCEEEEECCcCCCcccccEEEEcC
Confidence 1 11111111111222 2677888887654 4777775
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.88 E-value=0.0061 Score=52.84 Aligned_cols=228 Identities=8% Similarity=0.046 Sum_probs=115.9
Q ss_pred CeEEEEEcC--CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC
Q 012699 204 DRLLLIGTA--DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW 281 (458)
Q Consensus 204 ~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~ 281 (458)
+.+++.|+. ...+.+||..+++....-.... ..........++.+++.++.+. .....+.+||+.+.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFE--KRRDAACVFWDNVVYILGGSQL---------FPIKRMDCYNVVKD 80 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSC--CCBSCEEEEETTEEEEECCBSS---------SBCCEEEEEETTTT
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCc--ccceeEEEEECCEEEEEeCCCC---------CCcceEEEEeCCCC
Confidence 455666665 3578999998877543322221 1111122223566666766541 01148899999887
Q ss_pred ceeEEeecCCCCCcEEEEEEccCCCEEEEEecC------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEe
Q 012699 282 KAMTVLPLGEDPPAITSLCFNHNGKILAASAVD------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSL 353 (458)
Q Consensus 282 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~ 353 (458)
+-...-.+.........+.+ ++++++.|+.+ ..+.+||..+.+.... ++........+. .+++.++.|
T Consensus 81 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G 156 (306)
T 3ii7_A 81 SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCG 156 (306)
T ss_dssp EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEEC
Confidence 65443332222122222222 56677777765 4689999887653322 221112222222 256666666
Q ss_pred cC---------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCC
Q 012699 354 GS---------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHA 419 (458)
Q Consensus 354 ~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~ 419 (458)
+. -..+.+||..+.. |.... .. .....-..++. -++++++.|+.+ ..+.+||+.+..
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~~---W~~~~-~~----p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATET---WTELC-PM----IEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTTE---EEEEC-CC----SSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCcccccceEEEeCCCCCe---EEECC-Cc----cchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 64 2448889987652 22111 11 01111112222 267777777653 468889987653
Q ss_pred --cccccCCCCCcEEEEEECCCCCeEEEecCC-----CcEEEEeC
Q 012699 420 --SGMRTLPHGAAITTVDWHPTLPMFLTGSAD-----HSVQVMSL 457 (458)
Q Consensus 420 --~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iw~l 457 (458)
.+............+.+ ++++++.|+.+ ..+.+||+
T Consensus 228 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~ 270 (306)
T 3ii7_A 228 WKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT 270 (306)
T ss_dssp EEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred EEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence 11111111112222333 67788888754 35777775
No 310
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.88 E-value=0.01 Score=51.37 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=116.6
Q ss_pred EEEEEeC--CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC----CcEEEEEcCCCceeeeccCCC
Q 012699 161 NIASASV--DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTD 234 (458)
Q Consensus 161 ~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~ 234 (458)
+++.|+. ...+.+||..+.+...... ......-.+++. .++.+++.|+.+ ..+.+||+.+++....-....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRC-PFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCC-CSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCC-CCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 4455554 3568888877654321111 111111112222 356777777754 578899998886543322222
Q ss_pred CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec-
Q 012699 235 AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV- 313 (458)
Q Consensus 235 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 313 (458)
.........-++.+++.++.+.... ....+.+||+.+.+-...-.+.........+. -++++++.|+.
T Consensus 91 --~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 159 (306)
T 3ii7_A 91 --PRDSLAACAAEGKIYTSGGSEVGNS-------ALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSL 159 (306)
T ss_dssp --CCBSCEEEEETTEEEEECCBBTTBS-------CCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEE
T ss_pred --cccceeEEEECCEEEEECCCCCCCc-------EeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCC
Confidence 1111122223566777776541100 11378999998866544322221111122222 25666677654
Q ss_pred --------CCeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeEEeecCCc
Q 012699 314 --------DGMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSR 378 (458)
Q Consensus 314 --------dg~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~ 378 (458)
-..+.+||+.+.+.... +.........+.+ +++.++.|+.+ ..+.+||+.+.. |.... .
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~ 233 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE---WKMVS-P 233 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE---EEECC-C
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc---EEECC-C
Confidence 34588999887643322 2211122222333 56677777653 358889987642 22111 1
Q ss_pred ccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699 379 FCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH 418 (458)
Q Consensus 379 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~ 418 (458)
..........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 234 ---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 234 ---MPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ---CSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ---CCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 1111111222222 67777777743 46888888765
No 311
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.87 E-value=0.0038 Score=54.05 Aligned_cols=193 Identities=10% Similarity=0.110 Sum_probs=100.1
Q ss_pred CCeEEEEEcCC-----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEE
Q 012699 203 SDRLLLIGTAD-----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWN 277 (458)
Q Consensus 203 ~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d 277 (458)
++.+++.|+.+ ..+.+||..+++....-..... .....+..-++.+++.++.+... ....+.+||
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~d 130 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLGAAVLNGLLYAVGGFDGST--------GLSSVEAYN 130 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEEEEECSSC--------EEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceEEEEECCEEEEEcCCCCCc--------cCceEEEEe
Confidence 56777777754 3588999988775443222221 11111222356667776654210 114788999
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-------CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCC
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-------GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDET 348 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~ 348 (458)
+.+.+-...-...........+. -+++.++.|+.+ ..+.+||+.+.+... .++........+.+ +++
T Consensus 131 ~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 206 (302)
T 2xn4_A 131 IKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNL 206 (302)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred CCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCE
Confidence 98766544332222111122222 256666776643 358899988754332 22222222223333 566
Q ss_pred EEEEecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccCC
Q 012699 349 SIFSLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRGH 418 (458)
Q Consensus 349 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~~ 418 (458)
.++.|+.+ ..+.+||..+..- .... ... ..... .. +...++++++.|+.++ .+.+||+.+.
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~-~~~---~~r~~-~~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTNAW---RQVA-DMN---MCRRN-AG-VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTTEE---EEEC-CCS---SCCBS-CE-EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCCCCCcccceEEEEeCCCCCE---eeCC-CCC---Ccccc-Ce-EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 77777764 3688999876422 1111 110 11111 11 2223677777777543 5888888765
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.84 E-value=0.014 Score=51.72 Aligned_cols=248 Identities=8% Similarity=0.013 Sum_probs=128.7
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCC-CCCccc-cccCCCceEEEEEecC---CCeEEEEEcC---C----Cc
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSST-PASRNA-TIYCGTEIMSLEWECK---SDRLLLIGTA---D----GG 215 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~-~~~~~~~v~~~~~~~~---~~~~l~~~~~---d----g~ 215 (458)
.....|+|.|+|+++++ ..+|.|++++. ++. ...... ..........++++|. ++.+.++-.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45679999999975554 56699998873 332 110000 0112346789999954 4555554432 3 56
Q ss_pred EEEEEcCCC--c-----ee-eeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----
Q 012699 216 IKAWNVDAK--R-----VV-CDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK----- 282 (458)
Q Consensus 216 i~~wd~~~~--~-----~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~----- 282 (458)
|..|+...+ . .+ ..+... .......+.|.|++.++++.+.........-.....|.|.-++....-
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 777877654 1 11 112211 112346799999998777754321100000001122566666654320
Q ss_pred --eeEEeecCCCCCcEEEEEEcc-CCCEEEEEecCC---eEEEEeCCC----------------CceeeeeeCCCCCeEE
Q 012699 283 --AMTVLPLGEDPPAITSLCFNH-NGKILAASAVDG---MIHMFDMSA----------------GLQITGWPAHDSAISS 340 (458)
Q Consensus 283 --~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~v~d~~~----------------~~~~~~~~~~~~~v~~ 340 (458)
....+. .++ .....++|+| ++.++++-.... .|.+...-. ..++..+.........
T Consensus 186 f~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 011221 122 2346799999 566555432221 244432110 0122333112345778
Q ss_pred EEEc-------CCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 341 ILFG-------PDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 341 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
++|. .+|.++++.-..+.|...++...+...... .+.. .....+..+++.|||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~--~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK--NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc--CCCCCeeEEEECCCCcEEEEEe
Confidence 8883 467777776677888888887543322111 1111 1234588999999997666543
No 313
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.80 E-value=0.0093 Score=51.75 Aligned_cols=235 Identities=9% Similarity=0.009 Sum_probs=117.0
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcC----C-----CcEEEEEcCCC
Q 012699 158 SGNNIASASVD----GTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTA----D-----GGIKAWNVDAK 224 (458)
Q Consensus 158 ~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----d-----g~i~~wd~~~~ 224 (458)
++..++.|+.+ ..+.+||..+.+..... .......-.+++. .++.+++.|+. + ..+.+||+.++
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLA-DLQVPRSGLAGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECC-CCCcccccceEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 45566666632 35778887665432111 1111111112222 35677777765 2 46889999887
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccC
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHN 304 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 304 (458)
+....-..... ........-++.+++.++.+... ....+.+||+.+.+-...-.+.........+.+ +
T Consensus 101 ~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 168 (308)
T 1zgk_A 101 QWSPCAPMSVP--RNRIGVGVIDGHIYAVGGSHGCI--------HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--N 168 (308)
T ss_dssp EEEECCCCSSC--CBTCEEEEETTEEEEECCEETTE--------ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred eEeECCCCCcC--ccccEEEEECCEEEEEcCCCCCc--------ccccEEEECCCCCeEeECCCCCccccceEEEEE--C
Confidence 65433222211 11111122256677776654210 013788999987654433222221112222222 5
Q ss_pred CCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC-----CeEEEEeccCCCeeEE
Q 012699 305 GKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD-----GKIIEWSLQNQGQVLW 372 (458)
Q Consensus 305 ~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 372 (458)
+++++.|+.+ ..+.+||+.+.+... .++........+.+ +++.++.|+.+ ..+.+||+.+.. |
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~---W 243 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET---W 243 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE---E
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc---E
Confidence 6677777654 468999987754322 22211222223333 56677777664 458899987642 2
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH 418 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~ 418 (458)
.... . ...... -..++. -++++++.|+.+ ..+.+||+.+.
T Consensus 244 ~~~~-~---~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 244 TFVA-P---MKHRRS-ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EECC-C---CSSCCB-SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EECC-C---CCCCcc-ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2111 1 111111 112222 367777777643 35778887654
No 314
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.76 E-value=0.019 Score=50.80 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=61.8
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeec---CCCCCcEEEEEEccC---CCEEEE
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPL---GEDPPAITSLCFNHN---GKILAA 310 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~l~~ 310 (458)
.....+++.|++.++++-. . |.|.+++ +++....... .........++++|+ +..|++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~-~-------------g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAER-P-------------GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp SCEEEEEECTTSCEEEEET-T-------------TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCceEEEEcCCCeEEEEeC-C-------------CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 4577899999998666543 2 4888888 3332222111 122356899999998 556665
Q ss_pred EecC------CeEEEEeCCCCc-----ee-eeeeC---CCCCeEEEEEcCCCCEEEEec
Q 012699 311 SAVD------GMIHMFDMSAGL-----QI-TGWPA---HDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 311 ~~~d------g~i~v~d~~~~~-----~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~ 354 (458)
+... +.|..|+...+. .+ ..+.. .......++|.|+|.+.++.+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 5442 678888876431 11 22331 112346899999997666643
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.74 E-value=0.0068 Score=52.62 Aligned_cols=234 Identities=11% Similarity=0.044 Sum_probs=113.1
Q ss_pred CCeEEEEEcCC----CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEEC
Q 012699 203 SDRLLLIGTAD----GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 203 ~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
++.+++.|+.+ ..+.+||..+++....-.... ..........++.+++.++....... ......+.+||+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~----~~~~~~~~~~d~ 97 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQV--PRSGLAGCVVGGLLYAVGGRNNSPDG----NTDSSALDCYNP 97 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCEEEETTE----EEECCCEEEEET
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCc--ccccceEEEECCEEEEECCCcCCCCC----CeecceEEEECC
Confidence 45566666532 368889988876544322111 11111112235666666665200000 001137889999
Q ss_pred CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEE
Q 012699 279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
.+.+....-.+.........+.+ +++.++.|+.+ ..+.+||..+.+... .++........+.+ +++.++
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv 173 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYA 173 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEE
T ss_pred CCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEE
Confidence 87654433222221112222222 56677777644 368899987754322 22221222223333 566777
Q ss_pred EecCC-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCCCcc
Q 012699 352 SLGSD-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGHASG 421 (458)
Q Consensus 352 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~~~~ 421 (458)
.|+.+ ..+.+||+.+.. |.... .. .........+.+ ++++++.|+.+ ..+.+||+.+..-.
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~---W~~~~-~~---p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNE---WRMIT-AM---NTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTE---EEECC-CC---SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EeCCCCCCcCceEEEEeCCCCe---EeeCC-CC---CCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 77654 458888887642 22111 11 111111122222 67777777654 56899998765311
Q ss_pred --cccCCCCCcEEEEEECCCCCeEEEecCCC-----cEEEEeC
Q 012699 422 --MRTLPHGAAITTVDWHPTLPMFLTGSADH-----SVQVMSL 457 (458)
Q Consensus 422 --~~~~~h~~~v~~~~~~~~~~~l~s~~~dg-----~v~iw~l 457 (458)
............+.+ ++++++.|+.++ .+.+||+
T Consensus 245 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 285 (308)
T 1zgk_A 245 FVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP 285 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred ECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence 111111111122222 567788887543 4667765
No 316
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.73 E-value=0.0082 Score=52.30 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=97.0
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
.+++.|+ ..+..||..+++-.. .................++.+++.++........ .......+..||+.+.+-.
T Consensus 6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~ 80 (315)
T 4asc_A 6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNK--EDPMSAYFLQFDHLDSEWL 80 (315)
T ss_dssp EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCS--SSCEEEEEEEEETTTTEEE
T ss_pred EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCC--ccccccceEEecCCCCeEE
Confidence 3455566 579999999888543 2221111223333344577777777742100000 0000125888999876543
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEecC--------CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEec
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAVD--------GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLG 354 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 354 (458)
..-...........+.+ +++.++.|+.+ ..+.+||..+.+... .++........+. .+++.++.|+
T Consensus 81 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred ECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeC
Confidence 32221111111122222 56666777643 468999988754322 2222122222222 3566777776
Q ss_pred C-C-----CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCc-----cEEEEEccCC
Q 012699 355 S-D-----GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSV-----RAPIYQVRGH 418 (458)
Q Consensus 355 ~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~-----~i~i~~~~~~ 418 (458)
. + ..+.+||..+.. |.... ... ....-.++ ..-++++++.|+.++ .+.+||+.+.
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~---W~~~~-~~p----~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFE---WKELA-PMQ----TARSLFGA-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTE---EEECC-CCS----SCCBSCEE-EEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCCCcccceEEEEeCCCCe---EEECC-CCC----CchhceEE-EEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 5 2 358889887642 22111 111 11111122 223677777777543 5888888765
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.69 E-value=0.015 Score=51.03 Aligned_cols=199 Identities=10% Similarity=0.089 Sum_probs=109.3
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-ceeEEeecCC-----CCCcEEEEEEcc--CCC-EE
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-KAMTVLPLGE-----DPPAITSLCFNH--NGK-IL 308 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-~~~~~~~~~~-----~~~~i~~~~~~~--~~~-~l 308 (458)
...++...|+|..+++++... .+.........|.|.++|+++. .....+...+ .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~-pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKY-PGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC------------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEecccc-CCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 355677777766655543111 0000011123489999998742 1222333322 123567777766 353 34
Q ss_pred EEE-ec--CCeEEEEeCCCCc----eeeeeeCC-CCCeEEEEEcCCCCEEEEecC-----------------CCeEEEEe
Q 012699 309 AAS-AV--DGMIHMFDMSAGL----QITGWPAH-DSAISSILFGPDETSIFSLGS-----------------DGKIIEWS 363 (458)
Q Consensus 309 ~~~-~~--dg~i~v~d~~~~~----~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd 363 (458)
+++ .. +..|.+|++.... .+..+.+. -...+.+++.++|.+.++... .|.+..+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444 33 4577887775432 22333322 236789999999987776541 23444444
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCccc--ccCCCCCcEEEEEECC-C
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHASGM--RTLPHGAAITTVDWHP-T 439 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~~~--~~~~h~~~v~~~~~~~-~ 439 (458)
.. + ..... ..-...+.++||||++.|+++.. .++|+.|++.....+. +........-.+++.+ +
T Consensus 210 ~~--~-~~~~~---------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 210 PN--D-VRVVA---------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT 277 (355)
T ss_dssp TT--C-CEEEE---------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT
T ss_pred CC--e-EEEee---------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCC
Confidence 32 1 11110 11123688999999998888764 6789999986432211 1122346778899999 5
Q ss_pred CCeEEEecCC
Q 012699 440 LPMFLTGSAD 449 (458)
Q Consensus 440 ~~~l~s~~~d 449 (458)
|++.+++..+
T Consensus 278 G~lwva~~~~ 287 (355)
T 3sre_A 278 GDLWVGCHPN 287 (355)
T ss_dssp CCEEEEEESC
T ss_pred CcEEEEecCC
Confidence 9877766544
No 318
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.62 E-value=0.029 Score=49.07 Aligned_cols=231 Identities=9% Similarity=0.054 Sum_probs=119.8
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC--CCCCCceeeeeecCCCCeEEEeecccCCCCcceeec
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT--TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSW 268 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (458)
...+.++.|. +.+..+++ +..|.| +...+.++.-..... ......+..+.+.+ +..++. +..
T Consensus 35 ~~~~~~v~~~-~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~----------- 98 (327)
T 2xbg_A 35 TATILDMSFI-DRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEP----------- 98 (327)
T ss_dssp SSCEEEEEES-SSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EET-----------
T ss_pred CCcEEEEEEC-CCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECC-----------
Confidence 3468888887 44555554 456655 333444432222221 11224678888876 444443 332
Q ss_pred cceeEEEEECCCCceeEEeecC-CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCce-eeeeeCCCCCeEEEEEcCC
Q 012699 269 GFASLTVWNMKTWKAMTVLPLG-EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ-ITGWPAHDSAISSILFGPD 346 (458)
Q Consensus 269 ~~g~i~i~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~~~~~~~ 346 (458)
|.|.. ....++.-...... ..+..+..+.+.+++..++++ .+|.|+.- ...++. ......+...+..+++.|+
T Consensus 99 --g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~ 173 (327)
T 2xbg_A 99 --PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPS 173 (327)
T ss_dssp --TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTT
T ss_pred --CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCC
Confidence 23322 22223332222211 223457788887777666655 46654332 122322 2222345567899999999
Q ss_pred CCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--
Q 012699 347 ETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-- 424 (458)
Q Consensus 347 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-- 424 (458)
+.+++.+...+..+-+|-. +..-... . ......+..++++++++.++ ++.+|.+++.+.+.+..-...
T Consensus 174 ~~~~~~g~~G~~~~S~d~g-G~tW~~~-~-------~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~ 243 (327)
T 2xbg_A 174 GEYVAVSSRGSFYSTWEPG-QTAWEPH-N-------RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLS 243 (327)
T ss_dssp SCEEEEETTSSEEEEECTT-CSSCEEE-E-------CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBC
T ss_pred CcEEEEECCCcEEEEeCCC-CCceeEC-C-------CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccC
Confidence 8888776554444444421 1111100 0 12234678899999987665 455677777643222111111
Q ss_pred --CCCCCcEEEEEECCCCCeEEEecCCCcEE
Q 012699 425 --LPHGAAITTVDWHPTLPMFLTGSADHSVQ 453 (458)
Q Consensus 425 --~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 453 (458)
..+...+.++++.+++.+++++. +|.|.
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~ 273 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAGG-AGALL 273 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred CcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence 12334688999998877666554 66653
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.59 E-value=0.01 Score=52.64 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC--CCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699 202 KSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD--AFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK 279 (458)
Q Consensus 202 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~ 279 (458)
.++..++.+- ++.||.-++..+..-+.+.... ....+..+..+|+|.+++..+.. .|.|..+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--------------~V~Vv~LP 94 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--------------EIFVMEVP 94 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--------------EEEEEECC
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--------------eEEEEEec
Confidence 4555555543 3678887877544444444432 33467889999999999998876 78887776
Q ss_pred CCc------------eeEEeecCC----CCCcEEEEEEccC---CCEEEEEecCCeEEEEeCCCC--ceeeeee------
Q 012699 280 TWK------------AMTVLPLGE----DPPAITSLCFNHN---GKILAASAVDGMIHMFDMSAG--LQITGWP------ 332 (458)
Q Consensus 280 ~~~------------~~~~~~~~~----~~~~i~~~~~~~~---~~~l~~~~~dg~i~v~d~~~~--~~~~~~~------ 332 (458)
.+. ..+.+.+.. ...+|..+.|+|- +..|++-..|+.|++||+... ++. .+.
T Consensus 95 ~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~f 173 (452)
T 3pbp_A 95 WGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSF 173 (452)
T ss_dssp TTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEE
T ss_pred CccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccccc
Confidence 321 112333321 2467999999994 568999999999999999752 222 221
Q ss_pred ---CCCCCeEEEEEcCCCCEEEEe--cCCCeEEEE
Q 012699 333 ---AHDSAISSILFGPDETSIFSL--GSDGKIIEW 362 (458)
Q Consensus 333 ---~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 362 (458)
.....|.+++|.+++-.|+.. +..|.|+-.
T Consensus 174 g~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 174 GLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred CCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 223578999999988767664 477877543
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.001 Score=57.89 Aligned_cols=147 Identities=10% Similarity=0.154 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeec--C-CCCeEEEeecccCCCCcceeeccceeEEEEECCC
Q 012699 204 DRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS--P-VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT 280 (458)
Q Consensus 204 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~ 280 (458)
+.+++.++.||.|.-.|..+|+...++.... ..++....-. + ++..++... ..+|.|..++..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p------------~~dG~l~a~~~~~ 76 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEP------------FGDGNIYYFNAHQ 76 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECC------------STTTEEEEEETTT
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEE------------CCCCEEEEEECCC
Confidence 4578999999999999999999988877651 1122111100 1 112222221 2337999999888
Q ss_pred CceeEEeecCC--CCCcEEE---EEE-c----cCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCC--C-----eEEEEE
Q 012699 281 WKAMTVLPLGE--DPPAITS---LCF-N----HNGKILAASAVDGMIHMFDMSAGLQITGWPAHDS--A-----ISSILF 343 (458)
Q Consensus 281 ~~~~~~~~~~~--~~~~i~~---~~~-~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~--~-----v~~~~~ 343 (458)
+.....+.... ...++.. ..+ . ..+..+++|+.+|.+...|+++|+.+..+..... . ..|...
T Consensus 77 G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~ 156 (339)
T 2be1_A 77 GLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPE 156 (339)
T ss_dssp EEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC------------
T ss_pred CcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccc
Confidence 76554443221 1111211 001 0 1355789999999999999999999988864321 0 111111
Q ss_pred c-----CCCCEEEEecCCCeEEEEe
Q 012699 344 G-----PDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 344 ~-----~~~~~l~~~~~dg~i~iwd 363 (458)
. ..+..++.+..+..+.+.+
T Consensus 157 ~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 157 EKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp --------CCEEEEEEEEEECEECC
T ss_pred cccccccCCCeEEEecceEEEEEEC
Confidence 0 1234677777666666666
No 321
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.53 E-value=0.054 Score=49.82 Aligned_cols=238 Identities=11% Similarity=0.077 Sum_probs=140.0
Q ss_pred EEEEEcCCCcEEEEEcCCCceeeeccCCCCCCc-----------ee--------------eeeec---CCCCeEEEeecc
Q 012699 206 LLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPS-----------VL--------------DLKCS---PVEPIFVSAAAS 257 (458)
Q Consensus 206 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-----------v~--------------~~~~~---~~~~~~~~~~~~ 257 (458)
.+.+|+..|.++++-+.+++.+..+........ +. .+++. .||++++.-...
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 467888999999999999998877654332110 00 01111 234444444433
Q ss_pred cCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEc--cCCCEEEEEecC-------CeE-----------
Q 012699 258 RRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFN--HNGKILAASAVD-------GMI----------- 317 (458)
Q Consensus 258 ~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d-------g~i----------- 317 (458)
. ..|...+++..++.+.+... ....+..+.|- |+-.|++++++. |..
T Consensus 152 n------------~RvAri~l~~~~~d~Ii~iP-n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 152 N------------SRVARIRLDIMKCDKMITVP-NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp T------------TEEEEEETTTTEEEEEEECT-TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred C------------cceEEEECCcEeeceeEeCC-CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceE
Confidence 2 58888999998888887754 44678888887 677888888652 221
Q ss_pred -EEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC---------------CeEEEEeccCC--------------
Q 012699 318 -HMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD---------------GKIIEWSLQNQ-------------- 367 (458)
Q Consensus 318 -~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~-------------- 367 (458)
...|..+.+...++.. .+..-.+...+++++.++.+.+ ..+.++|+..-
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 0112222222111111 1223334556778877765542 12666665420
Q ss_pred --CeeEEeec----CCcccCCCCCCCceeEEEEccCCCEEEEEeC-CccEEEEEccCCCc-----c-------cccCCCC
Q 012699 368 --GQVLWTRN----CSRFCDPESSKSCRHEMALDVNGRRLLVTSG-SVRAPIYQVRGHAS-----G-------MRTLPHG 428 (458)
Q Consensus 368 --~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~~i~i~~~~~~~~-----~-------~~~~~h~ 428 (458)
-.++.... ...+.........++.+.++|||+++++++. +.++.++++..... + .....-.
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G 377 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG 377 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC
Confidence 01111110 0011111123345677999999999988776 68999999874211 1 1111234
Q ss_pred CcEEEEEECCCCCeEEEecCCCcEEEEeC
Q 012699 429 AAITTVDWHPTLPMFLTGSADHSVQVMSL 457 (458)
Q Consensus 429 ~~v~~~~~~~~~~~l~s~~~dg~v~iw~l 457 (458)
-.....+|.++|....|.--|..|.-|++
T Consensus 378 lGPlHt~Fd~~G~aYTtlfidSqvvkWni 406 (638)
T 3sbq_A 378 LGPLHTTFDGRGNAYTTLFIDSQVVKWNM 406 (638)
T ss_dssp SCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred CcccEEEECCCCceEeeeeecceEEEEec
Confidence 56789999999976667778999999986
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.51 E-value=0.018 Score=59.11 Aligned_cols=242 Identities=12% Similarity=0.160 Sum_probs=141.6
Q ss_pred CCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCC
Q 012699 168 DGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPV 247 (458)
Q Consensus 168 dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 247 (458)
...|.|-|+..+....+ ......+ .-.+ |..+.++.- ...++.++|+++...+......+ +|.-=.|-..
T Consensus 47 ~~~vvIidl~~~~~~~r-rpi~Ads----AIMn-P~~~iiALr-ag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~ 116 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR-RPISADS----AIMN-PASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL 116 (1630)
T ss_pred CceEEEEECCCCCCccc-ccccchh----hccC-CCcceEEEe-cCCeEEEeehHHhhhhcccccCC---CceEEEecCC
Confidence 34788889887654421 1122222 2234 444555544 36799999999988777666553 4555555544
Q ss_pred CCeEEEeecccCCCCcceeeccceeEEEEECCC-CceeEEeecCC--CCCcEEEEEEccCCCEEEEEe-------cCCeE
Q 012699 248 EPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-WKAMTVLPLGE--DPPAITSLCFNHNGKILAASA-------VDGMI 317 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-------~dg~i 317 (458)
...-+.+. ..|.-|++.. ..+.+.+.... ....|.....+++.++++..+ -.|.+
T Consensus 117 ~~l~lVT~---------------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 117 NTVALVTD---------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred CeeEEEcC---------------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 44433333 2899999964 23433332211 134577778888999887543 35789
Q ss_pred EEEeCCCCceeeeeeCCCCCeEEEEEc--CCCC-EEEEecC---CCeEEEEeccCC---CeeEEeecCCcccCCCCCCCc
Q 012699 318 HMFDMSAGLQITGWPAHDSAISSILFG--PDET-SIFSLGS---DGKIIEWSLQNQ---GQVLWTRNCSRFCDPESSKSC 388 (458)
Q Consensus 318 ~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~l~~~~~---dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~ 388 (458)
.+|..+.+ .-+.+.+|.+....+... +... .+..+.. .+.+.|-++... ..........-+..+......
T Consensus 182 QLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 182 QLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 99998743 334455665544333331 1111 2222211 368999998643 122222222233444455677
Q ss_pred eeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEE
Q 012699 389 RHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVD 435 (458)
Q Consensus 389 v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~ 435 (458)
+.++..|+.-..++..+.-|.++++|+.++..+..-.-...+|...+
T Consensus 261 pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~ 307 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA 307 (1630)
T ss_pred ceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEec
Confidence 78899999999999999999999999999876544332333443333
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.50 E-value=0.033 Score=48.40 Aligned_cols=190 Identities=10% Similarity=0.050 Sum_probs=94.0
Q ss_pred EEEEeCCCcEEEEecCCCCCCCccccccCC-CceEEEEEecCCCeEEEEEcC-----C------CcEEEEEcCCCceeee
Q 012699 162 IASASVDGTVRIWTYDSSTPASRNATIYCG-TEIMSLEWECKSDRLLLIGTA-----D------GGIKAWNVDAKRVVCD 229 (458)
Q Consensus 162 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~-----d------g~i~~wd~~~~~~~~~ 229 (458)
++.|+ ..+.+||..+.+-.. ...... ......... .++.+++.|+. . ..+..||..+++....
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 44555 468888887765431 111111 111222222 46677777773 1 1277889888765432
Q ss_pred ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEE
Q 012699 230 LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILA 309 (458)
Q Consensus 230 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 309 (458)
-.... .........-++.+++.++.+...+.. ....+.+||+.+.+-...-.+...... .+++. -+++.++
T Consensus 83 ~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~-----~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv 153 (315)
T 4asc_A 83 PPLPS--PRCLFGLGEALNSIYVVGGREIKDGER-----CLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYV 153 (315)
T ss_dssp CCBSS--CEESCEEEEETTEEEEECCEESSTTCC-----BCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEE
T ss_pred CCCCc--chhceeEEEECCEEEEEeCCcCCCCCc-----ccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEE
Confidence 22211 111111122256666666643211010 114789999988654332222211111 12222 3566777
Q ss_pred EEec-C-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCCC-----eEEEEeccCC
Q 012699 310 ASAV-D-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSDG-----KIIEWSLQNQ 367 (458)
Q Consensus 310 ~~~~-d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 367 (458)
.|+. + ..+.+||..+.+... .++.......++.+ +++.++.|+.++ .+.+||..+.
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 7765 2 468999988754322 22211122223333 566777777644 4788888765
No 324
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.46 E-value=0.036 Score=48.25 Aligned_cols=196 Identities=9% Similarity=0.061 Sum_probs=94.2
Q ss_pred eEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee
Q 012699 205 RLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM 284 (458)
Q Consensus 205 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~ 284 (458)
.+++.|+. .+..||..+++... .................++.+++.|+........ ...-...+..||..+.+-.
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~ 91 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENK--DQPLQSYFFQLDNVSSEWV 91 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC---------CCCBEEEEEETTTTEEE
T ss_pred hhhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCcccc--CCCccccEEEEeCCCCcEE
Confidence 34444543 48899999887544 2211111222333344567777777632100000 0000124788998876544
Q ss_pred EEeecCCCCCcEEEEEEccCCCEEEEEecC-------CeEEEEeCCCCceeee--eeCCCCCeEEEEEcCCCCEEEEecC
Q 012699 285 TVLPLGEDPPAITSLCFNHNGKILAASAVD-------GMIHMFDMSAGLQITG--WPAHDSAISSILFGPDETSIFSLGS 355 (458)
Q Consensus 285 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~ 355 (458)
..-.............+ +++.++.|+.+ ..+.+||..+.+.... ++........+. .+++.++.|+.
T Consensus 92 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~ 167 (318)
T 2woz_A 92 GLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGK 167 (318)
T ss_dssp ECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCE
T ss_pred ECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCC
Confidence 33222211111222222 56677777754 3588899887543322 111111112222 46667777764
Q ss_pred ------CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCC-----ccEEEEEccCC
Q 012699 356 ------DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGS-----VRAPIYQVRGH 418 (458)
Q Consensus 356 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~-----~~i~i~~~~~~ 418 (458)
-..+.+||..+.. |.... ... ....-.+++ .-++++++.|+.+ ..+.+||+.+.
T Consensus 168 ~~~~~~~~~~~~yd~~~~~---W~~~~-~~p----~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 168 TDDKKCTNRVFIYNPKKGD---WKDLA-PMK----TPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp ESSSCBCCCEEEEETTTTE---EEEEC-CCS----SCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCCCccceEEEEcCCCCE---EEECC-CCC----CCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 2358899987653 22111 110 111111222 2367777777653 35778888765
No 325
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.46 E-value=0.064 Score=49.34 Aligned_cols=211 Identities=9% Similarity=0.073 Sum_probs=122.5
Q ss_pred CCeEEEEEc-CCCcEEEEEcCCCceeeeccCCCCCCceeeeeec--CCCCeEEEeecccC---CCCcce--ee-ccceeE
Q 012699 203 SDRLLLIGT-ADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCS--PVEPIFVSAAASRR---YGSSNI--YS-WGFASL 273 (458)
Q Consensus 203 ~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~---~~~~~~--~~-~~~g~i 273 (458)
++++|+.-. .+..|...+++..++-..+..+.. ..+..+.+. |+..+++..+.... .....+ .. ..-+..
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~-~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNV-QAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC-SCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCC-cCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 356666655 467888899988887766655443 467777776 68888888776532 100111 00 000345
Q ss_pred EEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC---------------eEEEEe-----------------
Q 012699 274 TVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG---------------MIHMFD----------------- 321 (458)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~v~d----------------- 321 (458)
...|..+.+....+...+. .......+++++.++.+.+. .+.+++
T Consensus 220 ~~iD~~tm~v~~Qv~v~gn---ld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIVDGN---LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEETTTCSEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred EEEcCCccEEEEEEEcCCC---hhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 5567777666655544432 33455577777777664321 244444
Q ss_pred --------CCC----CceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEee---cCCcccCCCCC
Q 012699 322 --------MSA----GLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTR---NCSRFCDPESS 385 (458)
Q Consensus 322 --------~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~ 385 (458)
.+. +..+..+-.-......+..+|||++++.++. +.++.++|+++........ ...........
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 332 1111111111234456889999999887765 8899999998532211000 00001111224
Q ss_pred CCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 386 KSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 386 ~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
.......+|.++|.-..+-.-|.+|.-|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 56678899999995555555799999999964
No 326
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.43 E-value=0.0099 Score=54.58 Aligned_cols=109 Identities=12% Similarity=0.186 Sum_probs=62.0
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce--eeeeeC------CCCCeEEEEEcCC---CCEEEEecC--------
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ--ITGWPA------HDSAISSILFGPD---ETSIFSLGS-------- 355 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~-------- 355 (458)
....|+|.|+|+++++-...+.|++++..+++. +..+.. .......|+|+|+ +..|+.+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 468999999998776644334799888655543 222221 2456789999995 445554432
Q ss_pred -----CCeEEEEeccCCC-eeEEeecC-CcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 356 -----DGKIIEWSLQNQG-QVLWTRNC-SRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 356 -----dg~i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
...|.-++..... ........ ..+. ....+....++|.|||.+.++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p--~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP--SSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC--CCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCC--CCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654321 11000000 0011 12234578999999998776644
No 327
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.43 E-value=0.0018 Score=51.81 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=84.7
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCce------eeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQ------ITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+- +-. .-.++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 4679999999986666 788888877654221 11110 111 1478999999977766 569888887654
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----cccC--CCCCcEEEEEECCC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----MRTL--PHGAAITTVDWHPT 439 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----~~~~--~h~~~v~~~~~~~~ 439 (458)
.....|......+ ....-..+..+.+.|+|.+.++. ++.++-......... .... ..-..-+-+.|.|+
T Consensus 117 ~~~~~Wl~~a~~v--g~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 117 SDTDNWIARATEV--GSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV 192 (236)
T ss_dssp STTCCHHHHSEEE--ECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred CCCCceeccccEe--ccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence 3332222110000 00112457899999999998887 666543333221100 1111 12223445779999
Q ss_pred CCeEEEecCCCcE
Q 012699 440 LPMFLTGSADHSV 452 (458)
Q Consensus 440 ~~~l~s~~~dg~v 452 (458)
+.+.+.. +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 9876665 6643
No 328
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.42 E-value=0.058 Score=47.70 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=123.8
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCc-eeeeccC-CCCCCceeeeeecCC---CCeEEEeecc-cCCCCcce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKR-VVCDLNT-TDAFPSVLDLKCSPV---EPIFVSAAAS-RRYGSSNI 265 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~-~~~~~~v~~~~~~~~---~~~~~~~~~~-~~~~~~~~ 265 (458)
.....++|. ++++ |+++..+|.|++++. .++ .+..+.. .........++++|+ +..+..+... ...+
T Consensus 29 ~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~---- 101 (354)
T 3a9g_A 29 EVPWSIAPL-GGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG---- 101 (354)
T ss_dssp SCEEEEEEE-ETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG----
T ss_pred CCCeEEEEc-CCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC----
Confidence 346789999 5666 444556699999973 443 2222211 112245789999997 4444433221 0000
Q ss_pred eeccceeEEEEECCCC--c---ee---EEeecCCCCCcEEEEEEccCCCEEEEEec-------------CCeEEEEeCCC
Q 012699 266 YSWGFASLTVWNMKTW--K---AM---TVLPLGEDPPAITSLCFNHNGKILAASAV-------------DGMIHMFDMSA 324 (458)
Q Consensus 266 ~~~~~g~i~i~d~~~~--~---~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~~~ 324 (458)
...+.|..|+.... . .. ..+.. ........++|.|+|.+.++-+. .|.|..++...
T Consensus 102 --~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG 178 (354)
T 3a9g_A 102 --HIRNRVIRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG 178 (354)
T ss_dssp --CEEEEEEEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS
T ss_pred --CcceEEEEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC
Confidence 00126667776543 1 11 11221 11112467999999986665332 25677666542
Q ss_pred C--------c-eeeeeeCCCCCeEEEEEcC-CCCEEEEecCCC---eEEEEeccCCCeeEEe-----ecCCcccCCC---
Q 012699 325 G--------L-QITGWPAHDSAISSILFGP-DETSIFSLGSDG---KIIEWSLQNQGQVLWT-----RNCSRFCDPE--- 383 (458)
Q Consensus 325 ~--------~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~~~~~~~~-----~~~~~~~~~~--- 383 (458)
. . .+. -.++.. ...++|+| ++.++++-...+ .|.+. ..+...-|. .....+..+.
T Consensus 179 ~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 179 RPPADNPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp CCCTTSSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 2 0 111 123333 46899999 666555432221 23332 221110000 0000000010
Q ss_pred -CCCCceeEEEEc-------cCCCEEEEEeCCccEEEEEccCCCcc---cccC-CCCCcEEEEEECCCCCeEEEec
Q 012699 384 -SSKSCRHEMALD-------VNGRRLLVTSGSVRAPIYQVRGHASG---MRTL-PHGAAITTVDWHPTLPMFLTGS 447 (458)
Q Consensus 384 -~~~~~v~~~~~s-------~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~-~h~~~v~~~~~~~~~~~l~s~~ 447 (458)
.....+..++|. .+|+++++.-..+.|...+++..... ..+. +-...+.++++.|||.++++..
T Consensus 255 ~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 255 GSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 123356778883 57777776666778888888753221 1222 2245789999999998666653
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.32 E-value=0.081 Score=47.15 Aligned_cols=212 Identities=9% Similarity=0.097 Sum_probs=131.8
Q ss_pred CCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCC
Q 012699 213 DGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGED 292 (458)
Q Consensus 213 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~ 292 (458)
+..+.+.|+..+........ ...+...+|..+.++.-... .+.+||+++...++.+.+.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi-----~AdsAIMnP~~~iiALrag~--------------~lQiFnle~K~klks~~~~e~ 107 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI-----SADSAIMNPASKVIALKAGK--------------TLQIFNIEMKSKMKAHTMTDD 107 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC-----CCSEEEECSSSSCEEEEETT--------------EEEEEETTTTEEEEEEECSSC
T ss_pred CCeEEEEECCCCCcceeccc-----ccceeeeCCCCcEEEEecCC--------------eEEEEchHHhhhhcceecCCC
Confidence 34788888887654422221 23356678888888777643 999999999999998876542
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCCC----CCeEEEEEcCCCCEEEEecC-------CCeEE
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAHD----SAISSILFGPDETSIFSLGS-------DGKII 360 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~ 360 (458)
|.-=.|-.+ +.|+..+ +..|+-|++.. ..+.+.+..|. ..|..-..+++.++++..+- .|.+.
T Consensus 108 ---VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 108 ---VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp ---CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred ---ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 444455443 3555544 56799999974 45666666553 46777778889998775432 46789
Q ss_pred EEeccCCCeeEEeecCCcccCCCCCCCceeEEEEcc---CCCEEEEEeCC---ccEEEEEccCC---Cccc-----c-cC
Q 012699 361 EWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDV---NGRRLLVTSGS---VRAPIYQVRGH---ASGM-----R-TL 425 (458)
Q Consensus 361 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~~---~~i~i~~~~~~---~~~~-----~-~~ 425 (458)
+|..+....... ++|......+.+.- ..+.++.+... +.++|.++... .... . ..
T Consensus 183 LYS~er~~sQ~i----------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f 252 (494)
T 1bpo_A 183 LYSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF 252 (494)
T ss_dssp EEESTTCCEEEE----------CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred Eeeccccccchh----------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence 999886532221 11211111111111 11234444432 68999998543 1111 0 11
Q ss_pred ---CCCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 426 ---PHGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 426 ---~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
.-.+...++..++.-..+..-..-|.|.+||++
T Consensus 253 ppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle 288 (494)
T 1bpo_A 253 PPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (494)
T ss_dssp CTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence 124567788888888888888889999999974
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.30 E-value=0.082 Score=46.72 Aligned_cols=253 Identities=10% Similarity=0.028 Sum_probs=126.0
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCC--CCcc--ccccCCCceEEEEEecC---CCeEEEEEcC-------CC
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTP--ASRN--ATIYCGTEIMSLEWECK---SDRLLLIGTA-------DG 214 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--~~~~--~~~~~~~~v~~~~~~~~---~~~~l~~~~~-------dg 214 (458)
....|+|.|+|+.|+.+...|.|++++...... .... ...........++|+|. ++.+.++-.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 467999999998344455679999988533211 1100 01112345689999954 4555554332 23
Q ss_pred cEEEEEcCCC--c--eee----eccC-CCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc---
Q 012699 215 GIKAWNVDAK--R--VVC----DLNT-TDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK--- 282 (458)
Q Consensus 215 ~i~~wd~~~~--~--~~~----~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~--- 282 (458)
.|..|+...+ . ... .+.. .........+.|.|++.++++.+.........-.....|.|.-++....-
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666666533 1 111 1111 01111246799999997666654321100000001112567777765320
Q ss_pred ---------eeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCC--------------------------
Q 012699 283 ---------AMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAG-------------------------- 325 (458)
Q Consensus 283 ---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~-------------------------- 325 (458)
....+.. ++ .....++|+|....|.++.... .=.|.-+..+
T Consensus 179 npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp CTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1112221 22 3468899999433444443321 1122211111
Q ss_pred -----ceeeeeeCCCCCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEE
Q 012699 326 -----LQITGWPAHDSAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMA 393 (458)
Q Consensus 326 -----~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 393 (458)
.++..+.. ......++|.+ ++.++++.-..+.|...++... ...... .+. ......+..++
T Consensus 257 ~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~---~~~--~~~~~rp~~v~ 329 (353)
T 2g8s_A 257 VAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD-KVTEDG---RIL--TDRGQRIRDVR 329 (353)
T ss_dssp CTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT-EEEEEE---EES--GGGCCCEEEEE
T ss_pred CCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC-eEeeeE---Ecc--cCCCCceeEEE
Confidence 11122222 23566777753 4667777667788888888753 222111 111 01234688999
Q ss_pred EccCCCEEEEEe-CCccE
Q 012699 394 LDVNGRRLLVTS-GSVRA 410 (458)
Q Consensus 394 ~s~~g~~l~~~~-~~~~i 410 (458)
+.|||.++++.. .+|+|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999998665433 34433
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.15 E-value=0.11 Score=45.37 Aligned_cols=257 Identities=12% Similarity=0.090 Sum_probs=131.0
Q ss_pred eeeeccCCCCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCcc----ccccCCCceEEEEEecC---CCeEEEEEc-
Q 012699 140 LETFLGHTSPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRN----ATIYCGTEIMSLEWECK---SDRLLLIGT- 211 (458)
Q Consensus 140 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~~l~~~~- 211 (458)
+..+-..-...+.|+|.|||+++++--..|.|++++..++...... ...........++++|. ++.+.++-+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3344444556789999999998777655899999876544321110 11123456789999953 444444322
Q ss_pred -CCCcEEEEEcCCCc----------eee-eccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECC
Q 012699 212 -ADGGIKAWNVDAKR----------VVC-DLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMK 279 (458)
Q Consensus 212 -~dg~i~~wd~~~~~----------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~ 279 (458)
.++.|.-|....+. .+. .+.. ........+.|.|++.++++.+.........-.....|.|.-++..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d 182 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD 182 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence 34556666655421 111 1211 1112356799999998887765432111000001122455555554
Q ss_pred CCc-------eeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCCCc------------------eeeeeeC
Q 012699 280 TWK-------AMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSAGL------------------QITGWPA 333 (458)
Q Consensus 280 ~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~------------------~~~~~~~ 333 (458)
..- ....+. .++ .....++|+|+|.+.++-. .++.=.|.-+..+. ++..+..
T Consensus 183 G~ip~~nPf~~~~i~a-~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~ 260 (347)
T 3das_A 183 GEPAPGNPFPGSPVYS-YGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST 260 (347)
T ss_dssp SSBCTTCSSTTCCEEE-BCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT
T ss_pred CCccCCCCCCCCeEEe-eCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC
Confidence 320 111222 233 2356799999887655432 12212222222211 1223332
Q ss_pred CCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 334 HDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 334 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
+......++|. ++..+...-..+.|....+...+... ....+. ......+..++..|||.++++..
T Consensus 261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~---~~e~~l--~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAA---DPQAFL--EGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESS---CCEEES--TTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCCCCcceEEE-cCceeeccccCCEEEEEEecCCceec---ceEEee--cCCCCCccEEEECCCCcEEEEEc
Confidence 22355677775 45556555556666666665432110 000111 12335688899999998766544
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.14 E-value=0.24 Score=49.03 Aligned_cols=273 Identities=10% Similarity=0.096 Sum_probs=150.0
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCcee
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVV 227 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 227 (458)
..|.++....++ .|..|+.+| +..||..+..... ........|.++.. .++. |..++.+ -+..||..+++..
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~--~~~~~~~~i~~i~~--~~g~-lWigt~~-Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ--PETDFPTDVRTMAL--QGDT-LWLGALN-GLYTYQLQSRKLT 134 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC--CSCCCCSCEEEEEE--ETTE-EEEEETT-EEEEEETTTCCEE
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC--cccCCCceEEEEEe--cCCc-EEEEcCC-cceeEeCCCCeEE
Confidence 458888777666 566666665 7788876653221 11111234666653 3444 5555555 5888998776543
Q ss_pred eecc--CCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCC----CCCcEEEEEE
Q 012699 228 CDLN--TTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE----DPPAITSLCF 301 (458)
Q Consensus 228 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~----~~~~i~~~~~ 301 (458)
.... .......|.++....++.+.+.. .. .+..++..+.+... +.... ....|.++..
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~--------------Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~ 198 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYVGT-YN--------------GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLE 198 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEEEE-TT--------------EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEE
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEEEe-CC--------------CHhhCccCCCceEE-ecCCCccccccceeEEEEE
Confidence 2211 11112457788777777766643 22 57778877654332 22111 1234888888
Q ss_pred ccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccC
Q 012699 302 NHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCD 381 (458)
Q Consensus 302 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 381 (458)
.+++..|.+|+. +-+..+|..+++...........|.++...++|.+.+ |+. +-+.+++..+......... ....
T Consensus 199 d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~--~~~~ 273 (758)
T 3ott_A 199 DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHD--SRNI 273 (758)
T ss_dssp ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCC--TTCT
T ss_pred ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcC--CCCc
Confidence 887776666664 4588899876543221111234588888888886554 444 4577888765422111100 0001
Q ss_pred CCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc---C--CCCCcEEEEEECCCCCeEEEecCCCcE
Q 012699 382 PESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT---L--PHGAAITTVDWHPTLPMFLTGSADHSV 452 (458)
Q Consensus 382 ~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~---~--~h~~~v~~~~~~~~~~~l~s~~~dg~v 452 (458)
..-....|.++....+|.+.+ |+..| +.++........... . .....|.++.-.++|.+.+. +.+|..
T Consensus 274 ~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 274 QSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 112344688888888887665 44455 544433221111000 0 12346888888888875544 345533
No 333
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.06 E-value=0.14 Score=44.95 Aligned_cols=199 Identities=12% Similarity=0.128 Sum_probs=109.2
Q ss_pred eEEEEeCCCCCEEEEEe------------CCCcEEEEecCCCCCCCcccccc------CCCceEEEEEecC-CC-eEEEE
Q 012699 150 ISCCRFSSSGNNIASAS------------VDGTVRIWTYDSSTPASRNATIY------CGTEIMSLEWECK-SD-RLLLI 209 (458)
Q Consensus 150 v~~~~~~~~~~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~-~~-~~l~~ 209 (458)
.-.+...|+|..+++++ .+|.|.++|.++........... ..-....+.+.+. ++ .+|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34556678775555542 68999999987432211111111 1235667777642 23 34444
Q ss_pred E-cC--CCcEEEEEcCCCc----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCc----ceeeccceeEEEEEC
Q 012699 210 G-TA--DGGIKAWNVDAKR----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSS----NIYSWGFASLTVWNM 278 (458)
Q Consensus 210 ~-~~--dg~i~~wd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~i~i~d~ 278 (458)
+ .. +.++.+|+++.+. .+..+.. .......++.+.++|...++....-..... .......|.+..+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 4 33 4577887776532 2223332 233568899999999877765421000000 000112357777776
Q ss_pred CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe-cCCeEEEEeCCC-Cce--eeeeeCCCCCeEEEEEcC-CCCEEEEe
Q 012699 279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA-VDGMIHMFDMSA-GLQ--ITGWPAHDSAISSILFGP-DETSIFSL 353 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~ 353 (458)
. +...... .-...+.++|+||++.|+++. ..+.|+.|++.. ++. ...+. ..+..-.+++.+ +|++.+++
T Consensus 211 ~--~~~~~~~---~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 211 N--DVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp T--CCEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred C--eEEEeec---CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 3 2222221 123468999999998887765 467899999863 322 22332 245567788888 48766655
Q ss_pred cC
Q 012699 354 GS 355 (458)
Q Consensus 354 ~~ 355 (458)
..
T Consensus 285 ~~ 286 (355)
T 3sre_A 285 HP 286 (355)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 334
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.02 E-value=0.16 Score=44.90 Aligned_cols=251 Identities=13% Similarity=0.133 Sum_probs=122.3
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC-----CCCCCceeeeeecCC---CCeEEEeecccCCCCcc
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT-----TDAFPSVLDLKCSPV---EPIFVSAAASRRYGSSN 264 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~ 264 (458)
....++|. ++++.|+++...|.|++++.. +.....+.. .........++++|+ +..+...........
T Consensus 19 ~P~~i~~~-pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g-- 94 (353)
T 2g8s_A 19 HPWALAFL-PDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG-- 94 (353)
T ss_dssp SEEEEEEC-STTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS--
T ss_pred CcEEEEEc-CCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC--
Confidence 45789999 667624445567999999854 332111110 111235688999995 444443322110000
Q ss_pred eeeccceeEEEEECCCC--c--eeE-Eee-cC---CCCCcEEEEEEccCCCEEEEEec-------------CCeEEEEeC
Q 012699 265 IYSWGFASLTVWNMKTW--K--AMT-VLP-LG---EDPPAITSLCFNHNGKILAASAV-------------DGMIHMFDM 322 (458)
Q Consensus 265 ~~~~~~g~i~i~d~~~~--~--~~~-~~~-~~---~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~d~ 322 (458)
.....|..|++... . ... .+. .. ........++|.|+|.+.++-+. .|.|.-++.
T Consensus 95 ---~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~ 171 (353)
T 2g8s_A 95 ---KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTD 171 (353)
T ss_dssp ---CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEET
T ss_pred ---CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECC
Confidence 00135666666432 1 111 111 11 01112357999999955444322 246777776
Q ss_pred CCCc------------eeeee-eCCCCCeEEEEEcC-CCCEEEEecC--CCeEEEEeccCCCeeEEee------------
Q 012699 323 SAGL------------QITGW-PAHDSAISSILFGP-DETSIFSLGS--DGKIIEWSLQNQGQVLWTR------------ 374 (458)
Q Consensus 323 ~~~~------------~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~------------ 374 (458)
...- ....+ .++ .....++|+| +++ |+++.. ++.=.|.-+..+..--|..
T Consensus 172 dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 172 QGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp TSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 5320 11111 233 3467899999 564 444332 2222333332221100000
Q ss_pred ------cCCcccCCC---CCCCceeEEEEcc-------CCCEEEEEeCCccEEEEEccCCCcc--cccC-CCCCcEEEEE
Q 012699 375 ------NCSRFCDPE---SSKSCRHEMALDV-------NGRRLLVTSGSVRAPIYQVRGHASG--MRTL-PHGAAITTVD 435 (458)
Q Consensus 375 ------~~~~~~~~~---~~~~~v~~~~~s~-------~g~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~h~~~v~~~~ 435 (458)
.+..+..+. .+...+..++|.. +|+++++.-..+.|...+++..... ..+. .....+.+++
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~ 329 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR 329 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence 000000000 1123466677753 5677776666788888887754211 1122 2235799999
Q ss_pred ECCCCCeEEEec-CCCcE
Q 012699 436 WHPTLPMFLTGS-ADHSV 452 (458)
Q Consensus 436 ~~~~~~~l~s~~-~dg~v 452 (458)
+.|||.++++.. .+|.|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999999666433 44533
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.93 E-value=0.067 Score=47.37 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=49.5
Q ss_pred CCeEEEEEcCC-CcEEEEEcCC--CceeeeccCCCCCCceeeeeecCCCCeEEEeec-ccCCCCcceeeccceeEEEEEC
Q 012699 203 SDRLLLIGTAD-GGIKAWNVDA--KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAA-SRRYGSSNIYSWGFASLTVWNM 278 (458)
Q Consensus 203 ~~~~l~~~~~d-g~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~i~i~d~ 278 (458)
++.+++.|+.+ ..+.+||+.+ .+....-.... .......+..-++.+++.++. +...+.. .....+.+||+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~----~~~~~v~~yd~ 93 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPG-GPRDQATSAFIDGNLYVFGGIGKNSEGLT----QVFNDVHKYNP 93 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTT-CCCBSCEEEEETTEEEEECCEEECTTSCE----EECCCEEEEET
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCC-CcCccceEEEECCEEEEEcCCCCCCCccc----eeeccEEEEeC
Confidence 56666776643 4688899874 33322111110 111111122235666776665 2000000 01147899999
Q ss_pred CCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecC
Q 012699 279 KTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVD 314 (458)
Q Consensus 279 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 314 (458)
.+.+-...-........-.+++. .++++++.|+.+
T Consensus 94 ~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 94 KTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 88654443222211111122222 567777888754
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.88 E-value=0.18 Score=43.31 Aligned_cols=175 Identities=7% Similarity=0.059 Sum_probs=97.0
Q ss_pred eeecCCCCeEEEeecccCC-CCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEe----cCCe
Q 012699 242 LKCSPVEPIFVSAAASRRY-GSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASA----VDGM 316 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~ 316 (458)
--+++++..+......... ....+.......|+..++...+...... . ....|++++++|+-.. .+..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~----~~~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D----PCIYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S----CEEEEEEETTEEEEEEESSSSCEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C----CccEEEEeCCEEEEEeecCCCCce
Confidence 3457788887776543210 0000111223578888888765433321 1 1236788888888765 2446
Q ss_pred EEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecC-CCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEc
Q 012699 317 IHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGS-DGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD 395 (458)
Q Consensus 317 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 395 (458)
|+..++.. .....+..+.. .+++|+++.|+-.+. ...|...++......... . ... ...++
T Consensus 131 Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~-~-----------~~~-~~~~~ 192 (302)
T 3s25_A 131 LYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFY-D-----------CNC-YKPVV 192 (302)
T ss_dssp EEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEE-C-----------SCE-EEEEE
T ss_pred EEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEe-C-----------CCc-cceee
Confidence 66667663 33444444432 456788888886655 567877777654322111 1 011 12466
Q ss_pred cCCCEEEEEeCCc--cEEEEEccCCCcccccCCCCCcEEEEEECCCCCeEEEe
Q 012699 396 VNGRRLLVTSGSV--RAPIYQVRGHASGMRTLPHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 396 ~~g~~l~~~~~~~--~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 446 (458)
|++.+|+.....+ .|..-++.+... ..+.. ..+ ..|+|++.+|.-+
T Consensus 193 P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 193 LDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQ 240 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEE
T ss_pred ecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEE
Confidence 9999998876543 566667766542 22221 222 3477777766654
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.87 E-value=0.054 Score=43.37 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=82.0
Q ss_pred CceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCcee------EEeecCCCCCcEEEEEEccCCCEEEE
Q 012699 237 PSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAM------TVLPLGEDPPAITSLCFNHNGKILAA 310 (458)
Q Consensus 237 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~ 310 (458)
..+..++|+|++.+.+. .+ |.+.-.+..+.... ..+-..+- ....++.|.|+|.+.++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~-------------G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav 104 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LN-------------DKIYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV 104 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ET-------------TEEEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE
T ss_pred ccceeEEECCCccEEEE--eC-------------CeEEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe
Confidence 35779999998887766 33 47666666442211 11110111 12478999999987776
Q ss_pred EecCCeEEEEeCCCCce-------eeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCC
Q 012699 311 SAVDGMIHMFDMSAGLQ-------ITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPE 383 (458)
Q Consensus 311 ~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 383 (458)
.||.|+-++-.+... ...-..-=..+..|.|.|+|.+.+.. |+.++-..........+......+. .
T Consensus 105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g--~ 178 (236)
T 1tl2_A 105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIG--Q 178 (236)
T ss_dssp --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEE--S
T ss_pred --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceec--c
Confidence 579998888643211 11111112467999999999766655 7775433332221111110000000 0
Q ss_pred CCCCceeEEEEccCCCEEEEEeCCccE
Q 012699 384 SSKSCRHEMALDVNGRRLLVTSGSVRA 410 (458)
Q Consensus 384 ~~~~~v~~~~~s~~g~~l~~~~~~~~i 410 (458)
..-.....+.|.|+|.+.++. ++.+
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred CCcceEEEEEECCCCcEEEEe--CCeE
Confidence 111223447799999888877 6643
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.78 E-value=0.23 Score=43.05 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=89.3
Q ss_pred CCCCCEEEEEeC----CC-------cEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCC-------CcEE
Q 012699 156 SSSGNNIASASV----DG-------TVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTAD-------GGIK 217 (458)
Q Consensus 156 ~~~~~~l~s~~~----dg-------~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~ 217 (458)
..++..++.|+. ++ .+.+||..+.+..... .......-.+++. .++.+++.|+.+ ..+.
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP-PLPSARCLFGLGE--VDDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS-CBSSCBCSCEEEE--ETTEEEEEEEEBTTTCCEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC-CCCccccccceEE--ECCEEEEEcCccCCCCcccceEE
Confidence 446677777773 12 1667777665432111 1111111122222 256777777754 2578
Q ss_pred EEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEE
Q 012699 218 AWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~ 297 (458)
+||+.+++....-.... ......+...++.+++.++.+.... ....+.+||+.+.+-...-..........
T Consensus 131 ~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCLGGKTDDKK-------CTNRVFIYNPKKGDWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EEETTTTEEEEECCCSS--CEESCEEEEETTEEEEECCEESSSC-------BCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred EEeCCCCCEeECCCCCC--cccccEEEEECCEEEEEcCCCCCCC-------ccceEEEEcCCCCEEEECCCCCCCcccce
Confidence 88988876544322221 1111122224566667666432100 01378999998865444322221111122
Q ss_pred EEEEccCCCEEEEEecC-----CeEEEEeCCCCceee--eeeCCCCCeEEEEEcCCCCEEEEecCC
Q 012699 298 SLCFNHNGKILAASAVD-----GMIHMFDMSAGLQIT--GWPAHDSAISSILFGPDETSIFSLGSD 356 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d 356 (458)
++.+ +++.++.|+.+ ..+.+||+.+.+... .++........+. .+++.++.|+.+
T Consensus 202 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 263 (318)
T 2woz_A 202 VAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS--LAGSLYAIGGFA 263 (318)
T ss_dssp EEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred EEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE--ECCEEEEECCee
Confidence 2222 56677777653 357889987754332 2222112222222 246677777654
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.77 E-value=0.18 Score=49.26 Aligned_cols=206 Identities=11% Similarity=0.162 Sum_probs=108.5
Q ss_pred CCCeEEEEEcCC----CcEEEEEcCCCceeeec-cC---CCCCCc-eeeeeecC-CCCeEEEeecccCCCCcceeeccce
Q 012699 202 KSDRLLLIGTAD----GGIKAWNVDAKRVVCDL-NT---TDAFPS-VLDLKCSP-VEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 202 ~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~-~~---~~~~~~-v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
.++.+++.|+.+ ..+.+||..+++....- .. ...... -.+++..+ ++.+++.|+.+.... ...
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~-------~~~ 468 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ-------GLS 468 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC-------BCC
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC-------ccc
Confidence 356677777653 46889999887654332 10 011111 12333333 777777777653211 013
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCC--eEEEEeCCCCceeee-----eeCCCCCeEEEEEc
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDG--MIHMFDMSAGLQITG-----WPAHDSAISSILFG 344 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~v~d~~~~~~~~~-----~~~~~~~v~~~~~~ 344 (458)
.+.+||+.+.+....-.... +..-.+++.-.+++.++.|+.++ .+.+||..+.+.... ++.......++.+.
T Consensus 469 dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp CCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 68899998855433222211 11122333334788888887654 699999887653322 11112222335555
Q ss_pred CC-CCEEEEecC--C-----CeEEEEeccCCCe---eEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC-------
Q 012699 345 PD-ETSIFSLGS--D-----GKIIEWSLQNQGQ---VLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG------- 406 (458)
Q Consensus 345 ~~-~~~l~~~~~--d-----g~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~------- 406 (458)
.+ ++.++.|+. + ..+.+||+.+..- ..|...... + .....-..++...++++++.|+.
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~---p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH---P-LFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC---G-GGCCBSCEEEEEETTEEEEECCBCSSCCCC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC---C-CCCcccceEEEeCCCEEEEECCccCCCCCC
Confidence 54 667777765 2 4588999987651 112211110 0 01111123333344777777774
Q ss_pred -CccEEEEEccCCC
Q 012699 407 -SVRAPIYQVRGHA 419 (458)
Q Consensus 407 -~~~i~i~~~~~~~ 419 (458)
...+.+||+.+..
T Consensus 624 ~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 624 RTNSIISLDPLSET 637 (695)
T ss_dssp TTTSEEEEETTTTE
T ss_pred CCCeEEEEECCCCe
Confidence 3468999987653
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.76 E-value=0.18 Score=44.53 Aligned_cols=251 Identities=8% Similarity=-0.017 Sum_probs=113.6
Q ss_pred CCCEEEEEeCC-CcEEEEecCC--CCCCCcccccc-CCCceEEEEEecCCCeEEEEEcC-C---------CcEEEEEcCC
Q 012699 158 SGNNIASASVD-GTVRIWTYDS--STPASRNATIY-CGTEIMSLEWECKSDRLLLIGTA-D---------GGIKAWNVDA 223 (458)
Q Consensus 158 ~~~~l~s~~~d-g~v~iwd~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~~wd~~~ 223 (458)
+++.++.|+.+ ..+.++|... .+.... .... ....-.+++. -++.+++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~-~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTAL-AAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEEC-CCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeEC-CCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 55566666543 4678888764 222111 1111 1111122222 25677777765 2 4688999988
Q ss_pred CceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcce--------------------------eeccceeEEEEE
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNI--------------------------YSWGFASLTVWN 277 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~g~i~i~d 277 (458)
.+....-... ........+...++++++.++.+........ ...-...+.+||
T Consensus 96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CcEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 7754432222 1111112122256677777765421000000 000014899999
Q ss_pred CCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEec------CCeEEEEeC--CCCcee--eeeeCCCCCeEEEEEcCCC
Q 012699 278 MKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAV------DGMIHMFDM--SAGLQI--TGWPAHDSAISSILFGPDE 347 (458)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~v~d~--~~~~~~--~~~~~~~~~v~~~~~~~~~ 347 (458)
+.+.+-...-........-.+++.. ++++++.|+. ...+.+||+ .+.+.. ..+..........+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 9886654443322111111223322 5666666654 235777876 433222 2221111111111222356
Q ss_pred CEEEEecCC----------------------CeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEe
Q 012699 348 TSIFSLGSD----------------------GKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 348 ~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
+.++.|+.+ ..+.+||+.+..-... . ... ..... ..+...++++++.|+
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~-~---~~p---~~r~~--~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS-G---ELS---QGRAY--GVSLPWNNSLLIIGG 324 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE-E---ECS---SCCBS--SEEEEETTEEEEEEE
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC-C---CCC---CCccc--ceeEEeCCEEEEEee
Confidence 677777642 2477888875432111 0 111 11111 122345788888888
Q ss_pred CCc------cEEEEEccCCCccc
Q 012699 406 GSV------RAPIYQVRGHASGM 422 (458)
Q Consensus 406 ~~~------~i~i~~~~~~~~~~ 422 (458)
.++ .+.++++++.+...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eCCCCCEeeeEEEEEEcCcEeEe
Confidence 542 46666777765443
No 341
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.60 E-value=0.33 Score=42.45 Aligned_cols=240 Identities=14% Similarity=0.115 Sum_probs=122.3
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--ecc--CCCCCCceeeeeecCC----CCeEEEeecccCCCCc
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLN--TTDAFPSVLDLKCSPV----EPIFVSAAASRRYGSS 263 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~--~~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~ 263 (458)
...+.++|. +++.++++--..|.|++++...++... .+. ..........++++|+ +.+.++-+...
T Consensus 32 ~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~----- 105 (347)
T 3das_A 32 NSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS----- 105 (347)
T ss_dssp SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS-----
T ss_pred CCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC-----
Confidence 456889999 677766666558999999876555321 121 0112356789999995 33333322110
Q ss_pred ceeeccceeEEEEECCCCc--------eeEEee-cC-CCCCcEEEEEEccCCCEEEEEec-------------CCeEEEE
Q 012699 264 NIYSWGFASLTVWNMKTWK--------AMTVLP-LG-EDPPAITSLCFNHNGKILAASAV-------------DGMIHMF 320 (458)
Q Consensus 264 ~~~~~~~g~i~i~d~~~~~--------~~~~~~-~~-~~~~~i~~~~~~~~~~~l~~~~~-------------dg~i~v~ 320 (458)
.+.|.-|...... ....+. +. ........|+|.|+|.+.++.+. .|.|.-+
T Consensus 106 ------~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 106 ------DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp ------SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred ------CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 0356666554311 111111 11 11123467999999986666432 3556666
Q ss_pred eCCCC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEe-cCCCeEEEEeccCCCeeEEee-----cCCcccCCC--
Q 012699 321 DMSAG---------LQITGWPAHDSAISSILFGPDETSIFSL-GSDGKIIEWSLQNQGQVLWTR-----NCSRFCDPE-- 383 (458)
Q Consensus 321 d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~-- 383 (458)
+.... ..+.. .+|.+ ...++|+|+|.++++= +.|+.=.|--+..+..--|.. ....+..+.
T Consensus 180 ~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 65422 11111 24443 4589999988655443 223322333333222110000 000000000
Q ss_pred --CCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---cccC-CCCCcEEEEEECCCCCeEEEe
Q 012699 384 --SSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---MRTL-PHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 384 --~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---~~~~-~h~~~v~~~~~~~~~~~l~s~ 446 (458)
.+......++|. +|..+...-..+.|....++..... ..+. +....+.+++..|||.++++.
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 011244566665 4555555555566776777654321 1222 345689999999999966653
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.059 Score=46.89 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=97.1
Q ss_pred EEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEe--cCCCeEEEEE-cCCCcEEEEEcCCCceeeeccCCC--C
Q 012699 161 NIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWE--CKSDRLLLIG-TADGGIKAWNVDAKRVVCDLNTTD--A 235 (458)
Q Consensus 161 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~--~ 235 (458)
.++.++.||.|.-.|..+++........ ...++....-. +.++..++.. +.||.|..++..+|.....+.... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 6777888888888887777654322221 11122211100 0133444443 689999999988876544333211 0
Q ss_pred CCceee---eee-c----CCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCc-----EEEEEEc
Q 012699 236 FPSVLD---LKC-S----PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPA-----ITSLCFN 302 (458)
Q Consensus 236 ~~~v~~---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~-----i~~~~~~ 302 (458)
..++.. ..+ . ..+..+++++.+ |.+...|+++|+.+..+........ ..|....
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~-------------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~ 157 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMR-------------TIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEE 157 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEE-------------EEEEEEETTTCCEEEEESTTCBCC-------------
T ss_pred ccccccCCCceeecccccccCCEEEEEecC-------------CEEEEEECCCCcEEEEEecCCCccccccccccccccc
Confidence 011110 000 0 033455566655 6999999999999999875432111 1111111
Q ss_pred -----cCCCEEEEEecCCeEEEEeCCCCceeeeee-----CCCCC--eE-EEEEcCCCCEEEEecCCCeEEEEeccCCCe
Q 012699 303 -----HNGKILAASAVDGMIHMFDMSAGLQITGWP-----AHDSA--IS-SILFGPDETSIFSLGSDGKIIEWSLQNQGQ 369 (458)
Q Consensus 303 -----~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-----~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 369 (458)
..+..++.|..+..+.+.+ ++++ +..+. ..... +. +-..+.++.+ +.++.||.|.-+|..++..
T Consensus 158 d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 158 KIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp -------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred ccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 1245788888787777777 4453 22211 10000 00 0001123555 4467788888888776543
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.31 E-value=0.32 Score=47.44 Aligned_cols=198 Identities=10% Similarity=0.078 Sum_probs=104.5
Q ss_pred CCCCEEEEEeCC----CcEEEEecCCCCCCCcccc-----ccCCCceEEEEEecCCCeEEEEEcCC------CcEEEEEc
Q 012699 157 SSGNNIASASVD----GTVRIWTYDSSTPASRNAT-----IYCGTEIMSLEWECKSDRLLLIGTAD------GGIKAWNV 221 (458)
Q Consensus 157 ~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~~wd~ 221 (458)
.++..++.|+.+ ..+.+||..+.+....... ......-.+++..+.++.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777753 3578888877653321101 11111112233321167788887754 35788999
Q ss_pred CCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEee---cCCCCCcEEE
Q 012699 222 DAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLP---LGEDPPAITS 298 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~---~~~~~~~i~~ 298 (458)
.+++....-..... ..-.+++...++.+++.|+.+.. +.+.+||+.+..-...-. .........+
T Consensus 476 ~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~-----------~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a 543 (695)
T 2zwa_A 476 KTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEG-----------PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAG 543 (695)
T ss_dssp TTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSS-----------CSEEEEETTTTEEEECCCSSGGGGSCCBSCE
T ss_pred CCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCC-----------CCEEEEECCCCceEEccCCCCCCCcccceeE
Confidence 88765443222211 11122333247788888876532 178899998865443221 1111122233
Q ss_pred EEEccC-CCEEEEEec--C-----CeEEEEeCCCCce-----eeeee----CCCCCeEEEEEcCCCCEEEEecC------
Q 012699 299 LCFNHN-GKILAASAV--D-----GMIHMFDMSAGLQ-----ITGWP----AHDSAISSILFGPDETSIFSLGS------ 355 (458)
Q Consensus 299 ~~~~~~-~~~l~~~~~--d-----g~i~v~d~~~~~~-----~~~~~----~~~~~v~~~~~~~~~~~l~~~~~------ 355 (458)
+.+..+ ++.++.|+. + ..+.+||+.+.+. -..+. ....... ++...+++.++.|+.
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~ 622 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLF 622 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCC
Confidence 555655 667777765 2 4689999887661 11111 1111222 223333667777774
Q ss_pred --CCeEEEEeccCC
Q 012699 356 --DGKIIEWSLQNQ 367 (458)
Q Consensus 356 --dg~i~iwd~~~~ 367 (458)
...+.+||+.+.
T Consensus 623 ~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 623 DRTNSIISLDPLSE 636 (695)
T ss_dssp CTTTSEEEEETTTT
T ss_pred CCCCeEEEEECCCC
Confidence 345889998865
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.27 E-value=0.67 Score=42.42 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee--eccCC----CCCCceeeeeecCC---CCeEEEeecccCCCC
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC--DLNTT----DAFPSVLDLKCSPV---EPIFVSAAASRRYGS 262 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~----~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~ 262 (458)
...+.++|. ++++++++-...+.|++++..+++... .+... ........++++|+ +..+...........
T Consensus 27 ~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346789999 677766665444578888765554322 22211 12345779999995 444443332100000
Q ss_pred cceeeccceeEEEEECCCC--c---eeEEee-c-CCCCCcEEEEEEccCCCEEEEEe
Q 012699 263 SNIYSWGFASLTVWNMKTW--K---AMTVLP-L-GEDPPAITSLCFNHNGKILAASA 312 (458)
Q Consensus 263 ~~~~~~~~g~i~i~d~~~~--~---~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~ 312 (458)
..........|.-++.... + ....+. + .........|+|.|+|.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 0000000125555554321 1 111111 1 11123478999999998766644
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.88 E-value=0.51 Score=48.98 Aligned_cols=211 Identities=9% Similarity=0.097 Sum_probs=124.4
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDP 293 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~ 293 (458)
..|.|.|+..+..+.... -...+...+|..+.++.-.. .++.+||+.+...++.+.+..
T Consensus 48 ~~vvIidl~~~~~~~rrp-----i~AdsAIMnP~~~iiALrag--------------~~lQiFnl~~k~klks~~~~e-- 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP-----ISADSAIMNPASKVIALKAG--------------KTLQIFNIEMKSKMKAHTMTD-- 106 (1630)
T ss_pred ceEEEEECCCCCCccccc-----ccchhhccCCCcceEEEecC--------------CeEEEeehHHhhhhcccccCC--
Confidence 378888888766432211 12334557788887777653 399999999988888776543
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCC-CceeeeeeCC----CCCeEEEEEcCCCCEEEEec-------CCCeEEE
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQITGWPAH----DSAISSILFGPDETSIFSLG-------SDGKIIE 361 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i 361 (458)
+|.-=.|-.+. .|+..+ +..|+.|++.. ..+.+.+..| ...|..-..+++.++++..| -.|.+.+
T Consensus 107 -~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQL 183 (1630)
T 1xi4_A 107 -DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 183 (1630)
T ss_pred -CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeee
Confidence 35555555443 444443 55799999964 3555555444 34677777788888877443 3578899
Q ss_pred EeccCCCeeEEeecCCcccCCCCCCCceeEEEEc---cCCCEEEEEeC---CccEEEEEccCC---Ccccc------cCC
Q 012699 362 WSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALD---VNGRRLLVTSG---SVRAPIYQVRGH---ASGMR------TLP 426 (458)
Q Consensus 362 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~~~~---~~~i~i~~~~~~---~~~~~------~~~ 426 (458)
|.......... ++|......+... +..+.++.+.. .+.++|.++... ..... ..+
T Consensus 184 yS~er~~sQ~i----------egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~ 253 (1630)
T 1xi4_A 184 YSVDRKVSQPI----------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP 253 (1630)
T ss_pred eecccccchhh----------hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCC
Confidence 98875422111 1111111111110 11122222222 267888888543 11110 111
Q ss_pred ---CCCcEEEEEECCCCCeEEEecCCCcEEEEeCC
Q 012699 427 ---HGAAITTVDWHPTLPMFLTGSADHSVQVMSLS 458 (458)
Q Consensus 427 ---h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~l~ 458 (458)
-.+...++..++.-..+..-+.-|.|.++|++
T Consensus 254 ~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 254 PEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred cccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence 23456678888887778888888999999974
No 346
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.84 E-value=0.77 Score=39.37 Aligned_cols=240 Identities=9% Similarity=0.151 Sum_probs=137.6
Q ss_pred EeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC-ceeeeccC
Q 012699 154 RFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK-RVVCDLNT 232 (458)
Q Consensus 154 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~ 232 (458)
-.+|..+.||-=. ..++.|+|+++..... ......+|.--.|- +.+.|+..+. ..|.-|+++.. .+.+.+..
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klk---s~~~~e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMK---AHTMTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEE---EEECSSCEEEEEEC--SSSEEEEEES-SEEEEEESSTTCCCEEEEEC
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhc---ceecCCccEEEEec--CCCeEEEEcC-CcEEEEcccCCCCCceeeec
Confidence 3477777666544 6789999999876543 33345678888886 3344444443 47999999753 34444433
Q ss_pred CCC--CCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEcc--C-CCE
Q 012699 233 TDA--FPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNH--N-GKI 307 (458)
Q Consensus 233 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~--~-~~~ 307 (458)
+.. ...|..-..+++.++++..+-....+ .-.|.+.+|..+.+.... +++|......+.+.- . .++
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~------~v~G~mQLYS~er~~sQ~---ieGhaa~F~~~~~~g~~~~~~l 216 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQN------RVVGAMQLYSVDRKVSQP---IEGHAASFAQFKMEGNAEESTL 216 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETT------EEEEEEEEEETTTTEEEE---ECCSEEEEEEECCTTCSSCEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCC------ccceeEEEEeecccccce---eeeeeeeeEEEecCCCCCCceE
Confidence 321 25677888899999888776543221 112799999998744332 245532222222111 1 113
Q ss_pred EEEEec---CCeEEEEeCCCC---ceee-----e-e-e--CCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 308 LAASAV---DGMIHMFDMSAG---LQIT-----G-W-P--AHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 308 l~~~~~---dg~i~v~d~~~~---~~~~-----~-~-~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
|+.+.. .+.+++.++... .+.. . + + ...+-.-++..++.-..++.-+.-|.+.+||+.++.....
T Consensus 217 f~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 217 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp EEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 333332 258899888432 1111 1 1 1 1133445777777777888889999999999999866554
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCC
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGH 418 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~ 418 (458)
.+-. ...|-..+.+.+..-++.....|.|.-..++..
T Consensus 297 nrIS---------~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 297 NRIS---------GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EECC---------SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred eccC---------CCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 4321 122333333333333444446666655555543
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.81 E-value=1.1 Score=41.01 Aligned_cols=254 Identities=11% Similarity=0.040 Sum_probs=121.2
Q ss_pred CeEEEEeCCCCC-EEEEEeCCCcEEEEecCCCCCCCccc----ccc------CCCceEEEEEecC---CCeEEEEEcC--
Q 012699 149 PISCCRFSSSGN-NIASASVDGTVRIWTYDSSTPASRNA----TIY------CGTEIMSLEWECK---SDRLLLIGTA-- 212 (458)
Q Consensus 149 ~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~------~~~~v~~~~~~~~---~~~~l~~~~~-- 212 (458)
.-+.|+|.|+|. .|+.+...|.|++++........... ... .......|+|+|. ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 456899999986 45556678999999754321110000 111 1346788999953 3444444332
Q ss_pred C----------CcEEEEEcCCC----------ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCC----cceeec
Q 012699 213 D----------GGIKAWNVDAK----------RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGS----SNIYSW 268 (458)
Q Consensus 213 d----------g~i~~wd~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 268 (458)
+ ..|.-|.+..+ +.+..+...........|.|.|++.+.++.+....... ..-...
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 13444555321 22222221111124678999999988777665431100 000111
Q ss_pred cceeEEEEECCCCc-------------------eeEEeecCCCCCcEEEEEEccC-----CC-EEEEEecCC----eEEE
Q 012699 269 GFASLTVWNMKTWK-------------------AMTVLPLGEDPPAITSLCFNHN-----GK-ILAASAVDG----MIHM 319 (458)
Q Consensus 269 ~~g~i~i~d~~~~~-------------------~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg----~i~v 319 (458)
..|.|.-.|..... ....+. .++. ....++|+|. |. +++.+...| .-.|
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei 252 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARI 252 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeE
Confidence 22556666665420 011121 1232 2456899996 34 444443212 1233
Q ss_pred EeCCCC------ceeeeeeCCC-CCeEEEEEcC-------CCCEEEEecCCCeEEEEeccCCCeeEEeecC--C-cccCC
Q 012699 320 FDMSAG------LQITGWPAHD-SAISSILFGP-------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNC--S-RFCDP 382 (458)
Q Consensus 320 ~d~~~~------~~~~~~~~~~-~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~-~~~~~ 382 (458)
..+..+ .++..+..|. ..+..+.|-. .+.+|+ +...+.|....+...+........ . .....
T Consensus 253 ~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~-~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 253 LQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVF-GDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEE-EETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred eeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEE-ecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 333322 3455554332 4677888743 234454 444466665555433211110000 0 00001
Q ss_pred CCCCCceeEEEEccCCCEEEEEe
Q 012699 383 ESSKSCRHEMALDVNGRRLLVTS 405 (458)
Q Consensus 383 ~~~~~~v~~~~~s~~g~~l~~~~ 405 (458)
......+..+...|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 12345689999999999888775
No 348
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.79 E-value=1.7 Score=42.93 Aligned_cols=279 Identities=10% Similarity=0.060 Sum_probs=148.4
Q ss_pred CCeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccc---cCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCC
Q 012699 148 SPISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATI---YCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 148 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
..|.++...+++.+.+ |..+| +..++..+.......... .....|.++... .++..|..|+. +-+..+|..++
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCC
Confidence 4688888887877554 44444 667776554321100000 012347778776 44444444554 45888898776
Q ss_pred ceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecC-----CCCCcEEEE
Q 012699 225 RVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLG-----EDPPAITSL 299 (458)
Q Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~-----~~~~~i~~~ 299 (458)
+........ ...|.++....++.+.+.. .. .+.+++..+.+........ -....|.++
T Consensus 222 ~~~~~~~l~--~~~i~~i~~d~~g~lWigT-~~--------------Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 222 QIKQTEAFH--NNSIKSLALDGNGDLLAGT-DN--------------GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp EEEEEEEEE--EEEEEEEEECTTCCEEEEE-TT--------------EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEE
T ss_pred eEEeccCCC--CCeEEEEEEcCCCCEEEEe-CC--------------ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEE
Confidence 543221111 1357778777777766554 22 6778887765443221110 112458899
Q ss_pred EEccCCCEEEEEecCCeEEEEeCCCCceeeee-----eCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCC--eeEE
Q 012699 300 CFNHNGKILAASAVDGMIHMFDMSAGLQITGW-----PAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQG--QVLW 372 (458)
Q Consensus 300 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~ 372 (458)
...++|. |-+|+..| +.++........... ......|.++.-..+|.+.+ |+.+| +..++..+.. ....
T Consensus 285 ~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~ 360 (758)
T 3ott_A 285 FADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIW 360 (758)
T ss_dssp EECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEE
T ss_pred EEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEE
Confidence 8888776 45566666 555543221111110 01234688888888886544 44454 6666655321 1111
Q ss_pred eecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc-CC-----CCCcEEEEEECCCCCeEEEe
Q 012699 373 TRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT-LP-----HGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~-~~-----h~~~v~~~~~~~~~~~l~s~ 446 (458)
.... . .........|.++.-..+|++.+ |+. +-+..++..+....... .. ....|.++...+++.+.+ |
T Consensus 361 ~~~~-~-~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-g 435 (758)
T 3ott_A 361 YRMG-D-KTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-S 435 (758)
T ss_dssp ECTT-C-SSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-E
T ss_pred eccC-C-cCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-E
Confidence 1000 0 00111234588888888887665 444 46888888765321110 01 234688888888887554 4
Q ss_pred cCCCcEEEEe
Q 012699 447 SADHSVQVMS 456 (458)
Q Consensus 447 ~~dg~v~iw~ 456 (458)
+..+-|.+++
T Consensus 436 T~~~Gl~~~~ 445 (758)
T 3ott_A 436 TCLGGIFVVD 445 (758)
T ss_dssp ESSSCEEEEE
T ss_pred ECCCceEEEc
Confidence 4444455554
No 349
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.42 E-value=1.1 Score=38.34 Aligned_cols=163 Identities=9% Similarity=0.074 Sum_probs=92.3
Q ss_pred CcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEee--cccCCCCcceeeccceeEEEEECCCCceeEEeecCC
Q 012699 214 GGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAA--ASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGE 291 (458)
Q Consensus 214 g~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~ 291 (458)
..|+..+++.++....... ....+++++..++... .+. ...|...++..... ..+..
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~-------~~~~~s~~g~~Iy~~~~~~~~-----------~~~Iy~~~~dGs~~-~~lt~-- 146 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPD-------PCIYASLIGNYIYYLHYDTQT-----------ATSLYRIRIDGEEK-KKIKN-- 146 (302)
T ss_dssp EEEEEEETTSCCCEEEECS-------CEEEEEEETTEEEEEEESSSS-----------CEEEEEEETTSCCC-EEEES--
T ss_pred CeEEEEeCCCCcceEeecC-------CccEEEEeCCEEEEEeecCCC-----------CceEEEEECCCCCe-EEEeC--
Confidence 4677777776653322111 1235677888777665 111 14777777765443 33331
Q ss_pred CCCcEEEEEEccCCCEEEEEec-CCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCC--CeEEEEeccCCC
Q 012699 292 DPPAITSLCFNHNGKILAASAV-DGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSD--GKIIEWSLQNQG 368 (458)
Q Consensus 292 ~~~~i~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~ 368 (458)
+. + .+++|+++.|+-.+. ...|++.++..+.....+. +... ..++|++.+|+-...+ ..|..-++....
T Consensus 147 ~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~ 218 (302)
T 3s25_A 147 HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN 218 (302)
T ss_dssp SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence 21 1 356788888886655 5788888887655433332 2222 3456988888766543 356566665433
Q ss_pred eeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC--CccEEEEEccCCC
Q 012699 369 QVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG--SVRAPIYQVRGHA 419 (458)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~~i~i~~~~~~~ 419 (458)
.... . ...+ ..|+|++++|+.+.. .+.|..-++++..
T Consensus 219 ~~~L-------t-----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 219 PVVL-------T-----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp CEEC-------S-----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred eEEE-------e-----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2111 0 1112 348899999987643 3567777777654
No 350
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=93.19 E-value=3.8 Score=35.41 Aligned_cols=161 Identities=7% Similarity=0.016 Sum_probs=88.6
Q ss_pred CcEEEE-EEcc--CCCEEEEEecCCeEEEEeCCCCc-------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 294 PAITSL-CFNH--NGKILAASAVDGMIHMFDMSAGL-------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 294 ~~i~~~-~~~~--~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
..|..+ .+.+ +..+++..+.+|.++...+..-. ....++. .+.+..+........|+..+..|.+..+.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFS 173 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEE
Confidence 345554 4432 57799999999999998875422 2223333 34455555545556788888899988887
Q ss_pred cc--CCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc---------cccCCCCCcEE
Q 012699 364 LQ--NQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG---------MRTLPHGAAIT 432 (458)
Q Consensus 364 ~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~---------~~~~~h~~~v~ 432 (458)
.. .-...-........... .....|.++...+++.+|+..+..|.++.-.+..-... ..+..-.+.+.
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred CcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 76 22111000000011111 23445666666666778999999998888876543211 11111123444
Q ss_pred EEEECCCCCeEEEecCCCcEEEEe
Q 012699 433 TVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 433 ~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.+....+...++..+.+|.+.-++
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEE
T ss_pred EEEEeCCCccEEEEcCCCeEEEEe
Confidence 444333334455555566655443
No 351
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.94 E-value=4.2 Score=35.16 Aligned_cols=274 Identities=11% Similarity=0.041 Sum_probs=130.7
Q ss_pred CEEEEEeCCCcEEEEecCCCC-------CCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEE---cCC------
Q 012699 160 NNIASASVDGTVRIWTYDSST-------PASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWN---VDA------ 223 (458)
Q Consensus 160 ~~l~s~~~dg~v~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd---~~~------ 223 (458)
..+++.+.+|.|+--.+.+.. .. ..........+..+... .....++.-+..|.++... +..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~-~~~~~ke~D~~~~~~~~-~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGV-QGAGLKQDDIVAHFFVC-STHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC---------CCCCGGGCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCc-cccccCCCCEEEEEEEe-CCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 456778888888865532210 11 00111222334444333 3444555556667655443 332
Q ss_pred CceeeeccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-----eeEEeecCCCCCc
Q 012699 224 KRVVCDLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-----AMTVLPLGEDPPA 295 (458)
Q Consensus 224 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-----~~~~~~~~~~~~~ 295 (458)
|.++..+-.......|..+..-+ +...++..+.. |.++.-.+.... -...+.+... ..
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~-------------G~iKr~~l~~~~~~~r~G~~~i~lke~-D~ 147 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRN-------------GLVKKSKLTDFDSNRSGGIVAVNLRDN-DE 147 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETT-------------SEEEEEEGGGGCCCCSSCEESCBCCTT-CC
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCC-------------CEEEEeEHHHhhccccCceEEEEECCC-CE
Confidence 22211111111112344333222 34555555555 688887765422 2223334343 44
Q ss_pred EEEEEEccCCCEEEEEecCCeEEEEeCC--CC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 296 ITSLCFNHNGKILAASAVDGMIHMFDMS--AG---------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 296 i~~~~~~~~~~~l~~~~~dg~i~v~d~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
+..+........|+..+..|.+..+... .- .....+. ....|.++...+++.+++..+..|.++.-.+
T Consensus 148 lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l 226 (327)
T 3uc1_A 148 LVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAI 226 (327)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEG
T ss_pred EEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEH
Confidence 5555555555678888899998888776 21 1112222 2456777766666678999999999998887
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCccccc--------CCCCCcEEEEEE
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRT--------LPHGAAITTVDW 436 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~--------~~h~~~v~~~~~ 436 (458)
........................+..+....+...++..+.+|.+.-++...-....+. ....+.|.++..
T Consensus 227 ~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~ 306 (327)
T 3uc1_A 227 EEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIAR 306 (327)
T ss_dssp GGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEE
T ss_pred HHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEE
Confidence 643221100000011111111233444444445556777788888777776543221111 123456777766
Q ss_pred CCC-CCeEEEecCCC
Q 012699 437 HPT-LPMFLTGSADH 450 (458)
Q Consensus 437 ~~~-~~~l~s~~~dg 450 (458)
.+. ...+.+.+++|
T Consensus 307 ~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 307 NAEESGDDNAVDANG 321 (327)
T ss_dssp CC-------------
T ss_pred cCCCcceEEEEecCC
Confidence 543 34455555554
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.13 E-value=6.2 Score=35.16 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=64.3
Q ss_pred cEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeC--CC---CCeEEEEEcC-CCCEEEEecC-----------C
Q 012699 295 AITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPA--HD---SAISSILFGP-DETSIFSLGS-----------D 356 (458)
Q Consensus 295 ~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~---~~v~~~~~~~-~~~~l~~~~~-----------d 356 (458)
.+.+++++|. ...|+++...+ |+..+- .++.-..+.. .. ..+.+++++| +...|+.+.. +
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~ 310 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPG 310 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCC
T ss_pred ceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCC
Confidence 4889999985 45677776544 555442 2322222211 11 3456788876 3334444432 3
Q ss_pred CeEEEEeccCCCeeEEeecCCcccCCCCC-CCceeEEEEccC-CCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEE
Q 012699 357 GKIIEWSLQNQGQVLWTRNCSRFCDPESS-KSCRHEMALDVN-GRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTV 434 (458)
Q Consensus 357 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~-g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~ 434 (458)
+...+|...+.+....... ..+...... ......++++|. ...|++++.++.|+.-+- .+..-..+..+-..+.++
T Consensus 311 ~~~~~~~S~DgG~tW~~~~-~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D-~G~tW~~~~~~lp~~~~v 388 (394)
T 3b7f_A 311 GKPAVYVTRDAGESWQRQD-RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASAD-EGEHWQCIASHLPHIYAV 388 (394)
T ss_dssp SSCCEEEESSTTSCCEEEC-BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESS-TTSBCEEEECSCSCEEEE
T ss_pred CceeEEEECCCCCCceECC-CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECC-CCCCceEcccCCCCeeEE
Confidence 3345666555433221111 011110000 011245888885 355666766665554322 222222222333456677
Q ss_pred EEC
Q 012699 435 DWH 437 (458)
Q Consensus 435 ~~~ 437 (458)
+|.
T Consensus 389 ~~~ 391 (394)
T 3b7f_A 389 QSA 391 (394)
T ss_dssp EEE
T ss_pred EEe
Confidence 663
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.62 E-value=6.8 Score=34.60 Aligned_cols=174 Identities=7% Similarity=0.084 Sum_probs=100.6
Q ss_pred eEEEEECCCC--ceeEEeecCCC----CCcEEEEEEc---cC----CCEEEEEe-cCCeEEEEeCCCCceeeeee----C
Q 012699 272 SLTVWNMKTW--KAMTVLPLGED----PPAITSLCFN---HN----GKILAASA-VDGMIHMFDMSAGLQITGWP----A 333 (458)
Q Consensus 272 ~i~i~d~~~~--~~~~~~~~~~~----~~~i~~~~~~---~~----~~~l~~~~-~dg~i~v~d~~~~~~~~~~~----~ 333 (458)
.|.+||+.+. +.++.+.+... ...+..+++. |+ +.+++... ..+.|.|||+.+++.-+.+. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 8999999999 88888876432 3468888888 22 34554444 35789999998876544331 1
Q ss_pred C--------------CCCeEEEEEcCC----CCEEEEecCCCeEEEEeccCCCeeEE-eecCCcccCCCCCCCceeEEEE
Q 012699 334 H--------------DSAISSILFGPD----ETSIFSLGSDGKIIEWSLQNQGQVLW-TRNCSRFCDPESSKSCRHEMAL 394 (458)
Q Consensus 334 ~--------------~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 394 (458)
. ...+..|+++|+ ++.|+-....+. ++|.+.+.-.... ...........+....-..+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 0 136788999987 677776655442 3444432100000 0000000011111123345677
Q ss_pred c-cCCCEEEEEeCCccEEEEEccC-CCcc--cccC---CCCCcEEEEEECCCCCeEEEe
Q 012699 395 D-VNGRRLLVTSGSVRAPIYQVRG-HASG--MRTL---PHGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 395 s-~~g~~l~~~~~~~~i~i~~~~~-~~~~--~~~~---~h~~~v~~~~~~~~~~~l~s~ 446 (458)
+ .+|.++++--+.+.|..|+..+ .-.. .... ..-..+.++.+.++|.+.+..
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 5 6777777777888999999876 2211 1111 122357888888888755544
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.50 E-value=7.3 Score=34.69 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=34.8
Q ss_pred CcEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeC-----C--------CCCeEEEEEcCC-CCEEEEecCCC
Q 012699 294 PAITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPA-----H--------DSAISSILFGPD-ETSIFSLGSDG 357 (458)
Q Consensus 294 ~~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-----~--------~~~v~~~~~~~~-~~~l~~~~~dg 357 (458)
..+.++.++|. ...|+++..++.|...+- .++.-..+.. + ...+.++++.|. ...|+.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 35789999983 445566655555555432 2222221110 0 134889999985 35666666544
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.29 E-value=6 Score=33.35 Aligned_cols=220 Identities=12% Similarity=0.104 Sum_probs=110.9
Q ss_pred CceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccce
Q 012699 192 TEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFA 271 (458)
Q Consensus 192 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (458)
..|..++.- ....++. . ||.+..|-......+.. .. .....|..++.......++ . + |
T Consensus 24 ~~i~~ia~G--~~h~~~l-~-~G~v~~wG~n~~Gqlg~-p~-~~~~~i~~ia~G~~hs~~l--~-~-------------G 81 (282)
T 3qhy_B 24 SGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTM-PA-ATQSGVDAIAAGNYHSLAL--K-D-------------G 81 (282)
T ss_dssp SSCCEEEEC--SSEEEEE-E-TTEEEEEECCSSSTTSC-CG-GGGSCCCEEEECSSEEEEE--E-T-------------T
T ss_pred CCCcEEEeC--CCeEEEE-E-CCEEEEEeCCCCCCCCC-Cc-cCCCCEEEEEeCCCEEEEE--E-C-------------C
Confidence 457777654 3344444 4 89999997654322111 00 0112455555544333333 2 3 5
Q ss_pred eEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEE
Q 012699 272 SLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIF 351 (458)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 351 (458)
.+..|-......+-. +. .-...|..++...+ ..++-. +|.|+.|-....-.+-.-......|..++..... .+
T Consensus 82 ~v~~wG~n~~Gqlg~-P~-~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~ 154 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTV-PA-EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--AL 154 (282)
T ss_dssp EEEEEECCTTSTTCC-CG-GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EE
T ss_pred EEEEeeCCCCCCCCC-Cc-ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EE
Confidence 888887554222111 00 01235777776544 333345 9999999865422111111123457777664433 22
Q ss_pred EecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcE
Q 012699 352 SLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAI 431 (458)
Q Consensus 352 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v 431 (458)
.-. ||.+..|-.....++- .+......+..++...+.. ++ - .+|.++.|-......+.........|
T Consensus 155 ~l~-~G~v~~wG~n~~gqlg---------~p~~~~~~v~~i~~G~~hs-~a-l-~~G~v~~wG~n~~gqlg~p~~~~~~v 221 (282)
T 3qhy_B 155 AVK-NGGVIAWGDNYFGQTT---------VPAEAQSGVDDVAGGIFHS-LA-L-KDGKVIAWGDNRYKQTTVPTEALSGV 221 (282)
T ss_dssp EEE-TTEEEEEECCTTSTTS---------CCGGGGSSEEEEEECSSEE-EE-E-ETTEEEEEECCTTSTTCCCGGGGSSC
T ss_pred EEE-CCEEEEecCCCCCCCC---------CceecCCCeEEEEecCCEE-EE-E-ECCeEEEEECCCCCCCCCCcccCCCc
Confidence 233 7999999876544321 1111123455555544332 23 3 58999999776543332111122356
Q ss_pred EEEEECCCCCeEEEecCCCcEEEEe
Q 012699 432 TTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 432 ~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..++-.... .++.. ||.|..|-
T Consensus 222 ~~i~~G~~h-~~al~--~g~v~~wG 243 (282)
T 3qhy_B 222 SAIASGEWY-SLALK--NGKVIAWG 243 (282)
T ss_dssp CEEEECSSC-EEEEE--TTEEEEES
T ss_pred eEEEcCCCE-EEEEE--CCEEEEec
Confidence 666654433 23333 88888884
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=90.63 E-value=7.5 Score=33.33 Aligned_cols=121 Identities=10% Similarity=0.060 Sum_probs=72.6
Q ss_pred cEEEEEEcc---CCCEEEEEecCCeEEEEeCCC-------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 295 AITSLCFNH---NGKILAASAVDGMIHMFDMSA-------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 295 ~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
.|..+..-+ +..+|+..+..|.++...+.. |.....+.. .+.+..+....+...++..+.+|.+..+..
T Consensus 101 ~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~ 179 (312)
T 1suu_A 101 EILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNS 179 (312)
T ss_dssp CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred EEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEH
Confidence 354443332 456788889999999888743 222333443 455666655555567888899999999988
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
..-...-............ ....+..+..-+++..+++.+..|......+..
T Consensus 180 ~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 180 RDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp GGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred HHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 6521110000111111121 234456665555667788889999888888754
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.66 E-value=10 Score=33.45 Aligned_cols=128 Identities=9% Similarity=0.090 Sum_probs=71.2
Q ss_pred eeEEEEECCCCceeEEee----cC--------CC----CCcEEEEEEccC----CCEEEEEecCC-eEEEEe---CCCCc
Q 012699 271 ASLTVWNMKTWKAMTVLP----LG--------ED----PPAITSLCFNHN----GKILAASAVDG-MIHMFD---MSAGL 326 (458)
Q Consensus 271 g~i~i~d~~~~~~~~~~~----~~--------~~----~~~i~~~~~~~~----~~~l~~~~~dg-~i~v~d---~~~~~ 326 (458)
+.|.++|+.+++..+... .. +. ...+..++++|+ ++.|+.....+ .++-.. +++..
T Consensus 181 ~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~ 260 (381)
T 3q6k_A 181 GALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG 260 (381)
T ss_dssp TEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTT
T ss_pred CcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcc
Confidence 589999999877665441 11 10 136888999997 77777665544 233332 12211
Q ss_pred ---eeeeee--CCCCCeEEEEEc-CCCCEEEEecCCCeEEEEeccC-CC---eeEEeecCCcccCCCCCCCceeEEEEcc
Q 012699 327 ---QITGWP--AHDSAISSILFG-PDETSIFSLGSDGKIIEWSLQN-QG---QVLWTRNCSRFCDPESSKSCRHEMALDV 396 (458)
Q Consensus 327 ---~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~-~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 396 (458)
.+..+- +....-..+++. .+|..+++--....|..|+..+ .- ....... . ..-..+..+.+.+
T Consensus 261 ~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~------d-~~l~~pd~~~i~~ 333 (381)
T 3q6k_A 261 GKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT------S-SRFVFGTDISVDS 333 (381)
T ss_dssp CCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE------C-TTCCSEEEEEECT
T ss_pred hhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE------C-CCccccCeEEECC
Confidence 122211 111233456775 5787777777888999999875 21 1111100 0 1223467777777
Q ss_pred CCCEEEEEe
Q 012699 397 NGRRLLVTS 405 (458)
Q Consensus 397 ~g~~l~~~~ 405 (458)
+|.+.+..+
T Consensus 334 ~g~Lwv~sn 342 (381)
T 3q6k_A 334 KGGLWFMSN 342 (381)
T ss_dssp TSCEEEEEC
T ss_pred CCeEEEEEC
Confidence 776555543
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=89.09 E-value=10 Score=32.54 Aligned_cols=194 Identities=11% Similarity=0.139 Sum_probs=103.8
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCc------cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---C---
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPASR------NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---K--- 224 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~--- 224 (458)
|+..++++.+.+|.|+--.+..-..... ......+..+..+... ...+.++..+..|.++-..... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~-~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCV-NTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEE-CCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4666788999999999876654322111 0111233445555444 4455677777888877665432 1
Q ss_pred ---ceee-eccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCC
Q 012699 225 ---RVVC-DLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGED 292 (458)
Q Consensus 225 ---~~~~-~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~ 292 (458)
..+. .+..... ..+..+...+ +...++..+ ..|.++...+... .-...+.+..
T Consensus 85 ~~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~T-------------~~G~~kr~~l~~~~~~r~~G~~~i~L~~- 149 (312)
T 1suu_A 85 SKGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLTT-------------ASGKIARFESTDFKAVKSRGVIVIKLND- 149 (312)
T ss_dssp ---CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEEE-------------TTSEEEEEEGGGGCC----CEECBCCCT-
T ss_pred CCCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEEe-------------CCCeEEEEEHHHhhccCCCcEEEEecCC-
Confidence 1100 0111111 1233222211 223333333 3367777766332 2223334444
Q ss_pred CCcEEEEEEccCCCEEEEEecCCeEEEEeCCCC---------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 293 PPAITSLCFNHNGKILAASAVDGMIHMFDMSAG---------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 293 ~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
...+..+....+...++..+.+|.+..+....- .....+.. ...|.++..-+++..+++.+..|..+..+
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~ 228 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLN 228 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEE
Confidence 345555555555567888899999999987531 11222332 44566666555566788889999999998
Q ss_pred ccCC
Q 012699 364 LQNQ 367 (458)
Q Consensus 364 ~~~~ 367 (458)
+...
T Consensus 229 ~~e~ 232 (312)
T 1suu_A 229 MSKI 232 (312)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 8643
No 359
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=86.81 E-value=14 Score=31.74 Aligned_cols=245 Identities=12% Similarity=0.094 Sum_probs=119.5
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCC-ccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCC---------Cce
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPAS-RNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDA---------KRV 226 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~ 226 (458)
|+...+++.+.+|.|+--.+....... .......+..+..+... .....++..+..|.+.-+.... |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~-~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEM-NTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEE-ETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEE-CCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566778889999999876543211000 00112233445554444 4455666667778766555421 111
Q ss_pred eeeccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCC------CceeEEeecCCCCCcEE
Q 012699 227 VCDLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT------WKAMTVLPLGEDPPAIT 297 (458)
Q Consensus 227 ~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~------~~~~~~~~~~~~~~~i~ 297 (458)
+..+-.......|..+...+ ++..++.. +..|.++...+.. .+-...+.+... +.+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~-------------T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv 147 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFV-------------TRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVV 147 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEE-------------ETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEE-------------eCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEE
Confidence 11111011112233322111 12334443 4447888877642 223333344433 4555
Q ss_pred EEEEccCCCEEEEEecCCeEEEEeCCCCc---------eeeeeeCCCCCeEEEEEcCCCC-EEEEecCCCeEEEEeccCC
Q 012699 298 SLCFNHNGKILAASAVDGMIHMFDMSAGL---------QITGWPAHDSAISSILFGPDET-SIFSLGSDGKIIEWSLQNQ 367 (458)
Q Consensus 298 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 367 (458)
.+........++..+.+|.+..+....-. ....+. ....|.++...+++. .+++.+..|..+..++...
T Consensus 148 ~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 55555555678888899999888864311 111222 234566665444444 7888888898888887642
Q ss_pred CeeEEeecCCccc-CCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 368 GQVLWTRNCSRFC-DPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 368 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
............. ........+..+....++..++..+.+|.+.-..+..
T Consensus 227 ~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 227 EKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred cccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1110000000000 0111122344333333345566677777766666654
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=85.05 E-value=17 Score=30.99 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=118.2
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCCCCc------cccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---C----
Q 012699 157 SSGNNIASASVDGTVRIWTYDSSTPASR------NATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---A---- 223 (458)
Q Consensus 157 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~---- 223 (458)
|+...+++.+.+|.|+--.+........ ......+..+..+... ...+.++..+..|.+.-.... .
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~-~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVA-NTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEE-ETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEE-CCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 3556788889999998776654322110 0011223344444444 345556666777876655432 2
Q ss_pred --CceeeeccCCCCCCceeeeeec---CCCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecCCCC
Q 012699 224 --KRVVCDLNTTDAFPSVLDLKCS---PVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLGEDP 293 (458)
Q Consensus 224 --~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~~~~ 293 (458)
|.++..+-.......|..+... .++..++..+ ..|.++.-.+... +-...+.+...
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T-------------~~G~~Krt~l~e~~~~~r~G~~~i~l~~~- 145 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT-------------ANGTVKKTVLTEFNRLRTAGKVAIKLVDG- 145 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEE-------------TTSEEEEEEGGGGTTCCTTCEESSCCCTT-
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEe-------------CCCeEEEEEHHHhhccccCCeEEEEECCC-
Confidence 1111111111111233333221 1233344333 3478888766421 22233334444
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc---------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGL---------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
+.+..+....+...++..+.+|.+..++...-. ....+. ....|.++...+++..+++.+..|.++-.++
T Consensus 146 d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~ 224 (307)
T 1zi0_A 146 DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAV 224 (307)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECG
T ss_pred CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEH
Confidence 455555555555677788889998888864311 111222 2345666665555667888899999998887
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
........................+..+....+...++..+.+|.+.-+.+..
T Consensus 225 ~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 225 AEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 54321100000000111112223444433333445566677777766666654
No 361
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=84.24 E-value=21 Score=31.38 Aligned_cols=72 Identities=8% Similarity=0.173 Sum_probs=45.2
Q ss_pred CcEEEEEEcc---CCCEEEEEecCCeEEEEeCCCC-------ceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 294 PAITSLCFNH---NGKILAASAVDGMIHMFDMSAG-------LQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 294 ~~i~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
..|.++..-+ ++.+|+.++..|.++...+..- .....+.. .+.+..+........++..+..|.+..++
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 3455544322 4568999999999999886432 22223333 34555555545555788888889888887
Q ss_pred ccC
Q 012699 364 LQN 366 (458)
Q Consensus 364 ~~~ 366 (458)
...
T Consensus 178 ~~~ 180 (370)
T 3l6v_A 178 EST 180 (370)
T ss_dssp GGG
T ss_pred ccc
Confidence 653
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=81.77 E-value=24 Score=30.30 Aligned_cols=121 Identities=9% Similarity=0.041 Sum_probs=69.0
Q ss_pred cEEEE-EEcc--CCCEEEEEecCCeEEEEeCCC--------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEe
Q 012699 295 AITSL-CFNH--NGKILAASAVDGMIHMFDMSA--------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWS 363 (458)
Q Consensus 295 ~i~~~-~~~~--~~~~l~~~~~dg~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 363 (458)
.|..+ ...+ ++.+++..+.+|.++...+.. +.....+.. .+.+..+........++..+.+|.+..++
T Consensus 93 ~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~ 171 (323)
T 1wp5_A 93 EIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFD 171 (323)
T ss_dssp CEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEE
T ss_pred EEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 45544 3432 256888899999999988742 222222333 24555555545556788888999998888
Q ss_pred ccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCC-EEEEEeCCccEEEEEccC
Q 012699 364 LQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGR-RLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~~~~i~i~~~~~ 417 (458)
...-...-......+.... .....+..+..-+++. .|++.+..|..+..++..
T Consensus 172 ~~ev~~~gR~a~GV~~i~L-~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 172 ESEVSIVGVRAAGVKGMNL-KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp GGGSCBCCSSCCCEECCCC-CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred HHHCcccCCCCcCEEEEEe-CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 7642111100011111111 1234455554434444 788888888888777754
No 363
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=81.05 E-value=24 Score=29.65 Aligned_cols=240 Identities=14% Similarity=0.098 Sum_probs=121.4
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEEEecCCCCCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceee
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRIWTYDSSTPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVC 228 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 228 (458)
.|..++....- .++. . ||.|..|-......... .......|..++.. ....++. . ||.|..|-......+.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~--p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM--PAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC--CGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC--CccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCCC
Confidence 45666654432 2333 4 88898887554332211 11123356666654 3344444 4 8999999765422211
Q ss_pred e-ccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCE
Q 012699 229 D-LNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKI 307 (458)
Q Consensus 229 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 307 (458)
. ... ...|..++.......+++ + |.|..|-......+.... .....|..++...+.
T Consensus 96 ~P~~~---~~~v~~ia~G~~hs~al~---~-------------G~v~~wG~n~~gqlg~~~--~~~~~i~~i~~G~~~-- 152 (282)
T 3qhy_B 96 VPAEA---RSGVDAIAAGAWASYALK---D-------------GKVIAWGDDSDGQTTVPA--EAQSGVTALDGGVYT-- 152 (282)
T ss_dssp CCGGG---SSSEEEEEEETTEEEEEE---T-------------TEEEEEECCTTSTTSCCG--GGGSSEEEEEECSSE--
T ss_pred CCccc---CCCeEEEECcCCEEEEEe---C-------------CeEEEecCCCCCcCCCCc--cCCCCeEEEEcccCE--
Confidence 0 011 124555555544333333 2 588888765422221110 112347666655433
Q ss_pred EEEEecCCeEEEEeCCCCceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCC
Q 012699 308 LAASAVDGMIHMFDMSAGLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKS 387 (458)
Q Consensus 308 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 387 (458)
.+.-. ||.|+.|-....-.+..-..-...|..++..... .++. .||.+..|=.....++- .+.....
T Consensus 153 ~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg---------~p~~~~~ 219 (282)
T 3qhy_B 153 ALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTT---------VPTEALS 219 (282)
T ss_dssp EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTC---------CCGGGGS
T ss_pred EEEEE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCC---------CCcccCC
Confidence 22223 7999999765422211111113467777765443 2333 59999999876544331 0111123
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccccCCCCCcEEEEEECCCC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMRTLPHGAAITTVDWHPTL 440 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 440 (458)
.|..++....... +-. +|.++.|-.....+... ...|.+++-.+.-
T Consensus 220 ~v~~i~~G~~h~~--al~-~g~v~~wG~n~~gq~~v----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 220 GVSAIASGEWYSL--ALK-NGKVIAWGSSRTAPSSV----QSGVSSIEAGPNA 265 (282)
T ss_dssp SCCEEEECSSCEE--EEE-TTEEEEESTTCCCCGGG----SSCEEEEEECSSC
T ss_pred CceEEEcCCCEEE--EEE-CCEEEEecCCCCccccC----CCCcEEEEECcCe
Confidence 3556655443333 333 89999997766543322 2457777765543
No 364
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.68 E-value=34 Score=31.23 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCe-EEEEEcCCCcEEEEEcCCCc---eeeeccC--C-----CCCCceeeeeecCC
Q 012699 193 EIMSLEWECKSDR-LLLIGTADGGIKAWNVDAKR---VVCDLNT--T-----DAFPSVLDLKCSPV 247 (458)
Q Consensus 193 ~v~~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~---~~~~~~~--~-----~~~~~v~~~~~~~~ 247 (458)
..+.|+|. +++. .|+++...|.|++++..... .+..+.. . ........++++|+
T Consensus 15 ~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 45788998 4553 45556778999999754321 1111111 0 11245788999996
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=79.94 E-value=27 Score=29.72 Aligned_cols=121 Identities=9% Similarity=0.079 Sum_probs=70.2
Q ss_pred cEEEEEEc---cCCCEEEEEecCCeEEEEeCCC-------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEec
Q 012699 295 AITSLCFN---HNGKILAASAVDGMIHMFDMSA-------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSL 364 (458)
Q Consensus 295 ~i~~~~~~---~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 364 (458)
.|..+..- +++.+++..+.+|.++...+.. +.....+..+ +.+..+....+...++..+.+|.+..++.
T Consensus 96 ~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 96 RITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKE 174 (307)
T ss_dssp CEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred EEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEH
Confidence 45555432 3456788899999999987642 1122223333 55555555455557778888999888887
Q ss_pred cCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccC
Q 012699 365 QNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRG 417 (458)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~ 417 (458)
..-...-........... .....+..+..-+++..+++.+..|.++-.++..
T Consensus 175 ~~v~~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 175 SSVRAMGCNTTGVRGIRL-GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp GGSCBCCTTCCCEECCCC-CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred HHcCccCCCCCCeEeEEe-CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 642111000000011111 2234566665555667788889999888887743
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.52 E-value=41 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEE
Q 012699 337 AISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLW 372 (458)
Q Consensus 337 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 372 (458)
.+.+++..++..++++-+.|+++|+|++.+++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 567778888888999999999999999998765543
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=77.97 E-value=53 Score=31.95 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=55.6
Q ss_pred CCCcEEEEEcCCCc-------eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCc-e
Q 012699 212 ADGGIKAWNVDAKR-------VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWK-A 283 (458)
Q Consensus 212 ~dg~i~~wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~-~ 283 (458)
..+.|...++.++. ....+-.+.....+..+.+..+ .++++...+.. ..+.++|+.+++ .
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~-----------~~l~~~~~~~g~~~ 385 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV-----------AKVVTFTLENEQWT 385 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE-----------EEEEEECEETTEEC
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE-----------EEEEEEECCCCceE
Confidence 46778899987642 1122222333346778888876 44444444321 378888877664 2
Q ss_pred eEE-eecCCCCCcEEEEEEccCCCEE-EEEec---CCeEEEEeCC
Q 012699 284 MTV-LPLGEDPPAITSLCFNHNGKIL-AASAV---DGMIHMFDMS 323 (458)
Q Consensus 284 ~~~-~~~~~~~~~i~~~~~~~~~~~l-~~~~~---dg~i~v~d~~ 323 (458)
... +.+.. ...+.....++++..+ ++.+. -+.++.+|+.
T Consensus 386 ~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 386 KPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 233 43332 2446666667766544 44332 3678888876
No 368
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=77.97 E-value=29 Score=28.97 Aligned_cols=159 Identities=12% Similarity=0.040 Sum_probs=88.9
Q ss_pred CcEEEEEEcc-CCCEEEEEecCCeEEEEeCCCCc------eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccC
Q 012699 294 PAITSLCFNH-NGKILAASAVDGMIHMFDMSAGL------QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQN 366 (458)
Q Consensus 294 ~~i~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 366 (458)
..|..+.... +..+++..+.+|.++...+..-. ....++. .+.+..+........++..+..|.+..++...
T Consensus 68 e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~e 146 (276)
T 3no0_A 68 EKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVRE 146 (276)
T ss_dssp CCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhh
Confidence 4566654422 46789999999999999875432 1222332 34555555555566788888999988887654
Q ss_pred CCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcccc------cCCCCCcEEEEEECCCC
Q 012699 367 QGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASGMR------TLPHGAAITTVDWHPTL 440 (458)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~~~------~~~h~~~v~~~~~~~~~ 440 (458)
-...-........... .....+..+...+++..++..+..|.++...+..-....+ ...-.+.+..+....+.
T Consensus 147 ip~~gR~a~Gv~~i~L-~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~ 225 (276)
T 3no0_A 147 VPPSTPGARGVQGIKL-EKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEE 225 (276)
T ss_dssp SCBCCTTCCCEECCCC-CTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSE
T ss_pred CCCcCCCCCCEEEEcc-CCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCC
Confidence 2211000000011111 2234566655556677888999999988888754321111 01223445444333333
Q ss_pred CeEEEecCCCcEEE
Q 012699 441 PMFLTGSADHSVQV 454 (458)
Q Consensus 441 ~~l~s~~~dg~v~i 454 (458)
..++..+.+|.+..
T Consensus 226 ~~i~~~t~~G~~ir 239 (276)
T 3no0_A 226 VELLITTKNGKAFY 239 (276)
T ss_dssp EEEEEEETTSCEEE
T ss_pred CEEEEEcCCCeEEE
Confidence 34555666776655
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=77.68 E-value=48 Score=31.30 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=47.6
Q ss_pred ceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCCCceeEEeecCCCCCcEEEEEEccCCCEEEEE
Q 012699 238 SVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAS 311 (458)
Q Consensus 238 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 311 (458)
..-.|.|+|.|.+++....+... ........+..+.+.+..+++....+.. .....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~-~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSN-AGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCC-SGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcc-cccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 45679999999977765543211 1111122334677778888777666653 345789999999999988775
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.20 E-value=37 Score=28.32 Aligned_cols=198 Identities=11% Similarity=0.064 Sum_probs=104.0
Q ss_pred CeEEEEeCCCCCEEEEEeCCCcEEE---EecCCCCCCCccccccCCCceEEEEEecC-CCeEEEEEcCCCcEEEEEcCCC
Q 012699 149 PISCCRFSSSGNNIASASVDGTVRI---WTYDSSTPASRNATIYCGTEIMSLEWECK-SDRLLLIGTADGGIKAWNVDAK 224 (458)
Q Consensus 149 ~v~~~~~~~~~~~l~s~~~dg~v~i---wd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 224 (458)
.+..+.......+|+.-+..|.++- |++....... . ...+..|..+.. +. ++..++..+.+|.++...+..-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 3444444334445555666776653 4443322111 2 334566766643 33 5678999999999999887543
Q ss_pred c----eeeeccCCCCCCceeeeeecCCCCeEEEeecccCCCCcceeeccceeEEEEECCC-------CceeEEeecCCCC
Q 012699 225 R----VVCDLNTTDAFPSVLDLKCSPVEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKT-------WKAMTVLPLGEDP 293 (458)
Q Consensus 225 ~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~-------~~~~~~~~~~~~~ 293 (458)
. -...+...+. ..+..+........++..+.. |.+..+.... .+-...+.+...
T Consensus 101 ~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~-------------G~~~r~~~~eip~~gR~a~Gv~~i~L~~~- 165 (276)
T 3no0_A 101 EYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKK-------------GRVARFSVREVPPSTPGARGVQGIKLEKN- 165 (276)
T ss_dssp TTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETT-------------SEEEEEEGGGSCBCCTTCCCEECCCCCTT-
T ss_pred hhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECC-------------CEEEEEEhhhCCCcCCCCCCEEEEccCCC-
Confidence 2 1111111111 223333333333333333333 5766665422 122223333333
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCC-------CceeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEE--Eec
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSA-------GLQITGWPAHDSAISSILFGPDETSIFSLGSDGKIIE--WSL 364 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i--wd~ 364 (458)
..|..+...+++..++..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. ++.
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 4566665555667888889999999888643 2223333 23445555444333446666777888777 776
Q ss_pred cC
Q 012699 365 QN 366 (458)
Q Consensus 365 ~~ 366 (458)
..
T Consensus 245 ~~ 246 (276)
T 3no0_A 245 KD 246 (276)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 371
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=73.65 E-value=74 Score=31.46 Aligned_cols=65 Identities=9% Similarity=-0.006 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCC-CCEEEEEeCCCcEEEEecCCCCCCCcccc-cc----CCCceEEEEEecCCCeEEEEEcC
Q 012699 147 TSPISCCRFSSS-GNNIASASVDGTVRIWTYDSSTPASRNAT-IY----CGTEIMSLEWECKSDRLLLIGTA 212 (458)
Q Consensus 147 ~~~v~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~l~~~~~ 212 (458)
.+.|.+|+++|. ...++.+...+.|...+ +.++.-..... .. ....+.+++++|.+...++.+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g 84 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQG 84 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEEC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeC
Confidence 458999999995 34566666667665443 22211000000 00 13468999999656566666543
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=71.84 E-value=15 Score=34.60 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=42.0
Q ss_pred cEEEEEEccCCCEEEEEecC------------CeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEe
Q 012699 295 AITSLCFNHNGKILAASAVD------------GMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSL 353 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~d------------g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 353 (458)
..-.|+|+|.|+++++-..+ ..+.+.+..+++..+.+..+ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35678999999866654321 24667777777766655554 4589999999999887754
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=69.98 E-value=28 Score=32.64 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=43.2
Q ss_pred CcEEEEEEccCCCEEEEEec------------CCeEEEEeCCCCceeeeeeCC-CCCeEEEEEcCCCCEEEEe
Q 012699 294 PAITSLCFNHNGKILAASAV------------DGMIHMFDMSAGLQITGWPAH-DSAISSILFGPDETSIFSL 353 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~------------dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 353 (458)
.....|+|+++|.+.++... ...+..++..+++....+... ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678999999987764321 126777887778766655543 3578999999999988765
No 374
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=61.17 E-value=28 Score=32.57 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=39.7
Q ss_pred CceeEEEEccCCCEEEEEeC------------CccEEEEEccCCCcccccCC-CCCcEEEEEECCCCCeEEEe
Q 012699 387 SCRHEMALDVNGRRLLVTSG------------SVRAPIYQVRGHASGMRTLP-HGAAITTVDWHPTLPMFLTG 446 (458)
Q Consensus 387 ~~v~~~~~s~~g~~l~~~~~------------~~~i~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~ 446 (458)
.....|.|+++|.+.+.... .+.++.++..+++....+.+ ....++.++|+||++.|..+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 45678999999988774332 22566666655543222222 34679999999999977654
No 375
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=59.33 E-value=73 Score=26.17 Aligned_cols=148 Identities=9% Similarity=0.036 Sum_probs=76.0
Q ss_pred EEEEEecCCeEEEEeCCCCc-eeeeeeCCCCCeEEEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEe-ecCCcccCCCC
Q 012699 307 ILAASAVDGMIHMFDMSAGL-QITGWPAHDSAISSILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWT-RNCSRFCDPES 384 (458)
Q Consensus 307 ~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~ 384 (458)
..++.+.+|.|+--...... ....++.. +.+..+........|+..+..|.++-+....-...... ......... .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L-~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-P 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCC-C
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecC-C
Confidence 45556777777765543311 11123333 33444433334445666777888766655432100000 000011112 2
Q ss_pred CCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCc-------ccccCCCCCcEEEEEEC-CCCCeEEEecCCCcEEEEe
Q 012699 385 SKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHAS-------GMRTLPHGAAITTVDWH-PTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 385 ~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~-------~~~~~~h~~~v~~~~~~-~~~~~l~s~~~dg~v~iw~ 456 (458)
....|..+....++.+|+.++..|.++...+..-.. ...+ .-.+.+..+... .++..++..+.+|.+..+.
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L-~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCC-CTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEE-CCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566654434667788899999999888754211 1111 123455555554 3345677788888877766
Q ss_pred C
Q 012699 457 L 457 (458)
Q Consensus 457 l 457 (458)
+
T Consensus 161 ~ 161 (256)
T 1zvt_A 161 V 161 (256)
T ss_dssp G
T ss_pred H
Confidence 4
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=58.58 E-value=95 Score=27.23 Aligned_cols=245 Identities=11% Similarity=0.006 Sum_probs=119.4
Q ss_pred eCCCCCEEEEEeCCCcEEEEecCCC-------CCCCccccccCCCceEEEEEecCCCeEEEEEcCCCcEEEEEcC---C-
Q 012699 155 FSSSGNNIASASVDGTVRIWTYDSS-------TPASRNATIYCGTEIMSLEWECKSDRLLLIGTADGGIKAWNVD---A- 223 (458)
Q Consensus 155 ~~~~~~~l~s~~~dg~v~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~---~- 223 (458)
+-|+..++++.+.+|.|+--.+... ... ..........+..+... .....++..+..|.+.-+... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~-~~~~lke~D~l~~~~~~-~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGR-SAASTKEEDFIDQLWLV-NTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCS-EEEECSCCCCEEEEEEE-CTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCc-eecccCCCCEEEEEEEe-cCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 3577788999999999997654321 111 11122334455555554 445556666777776655432 1
Q ss_pred -----CceeeeccCCCCCCceeeeeecC---CCCeEEEeecccCCCCcceeeccceeEEEEECCCC-----ceeEEeecC
Q 012699 224 -----KRVVCDLNTTDAFPSVLDLKCSP---VEPIFVSAAASRRYGSSNIYSWGFASLTVWNMKTW-----KAMTVLPLG 290 (458)
Q Consensus 224 -----~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~i~i~d~~~~-----~~~~~~~~~ 290 (458)
|..+..+-.......|..+.... .+..++..+. .|.++.-.+... .-...+.+.
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~-------------~G~vKrt~l~e~~~~~~~G~~ai~L~ 147 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATR-------------NGTVKKTPLSEFAFRLARGKIAINLD 147 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEET-------------TSEEEEEEGGGGCSCCTTCEESSCCC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeC-------------CCeEEEeEHHHhhcccCCceEEEEeC
Confidence 11111110011112333332211 2234444443 468887765432 223333443
Q ss_pred CCCCcEEEEEEccCCCEEEEEecCCeEEEEeCCCCc---------eeeeeeCCCCCeEEEEEcC----------------
Q 012699 291 EDPPAITSLCFNHNGKILAASAVDGMIHMFDMSAGL---------QITGWPAHDSAISSILFGP---------------- 345 (458)
Q Consensus 291 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~~~~~~~~v~~~~~~~---------------- 345 (458)
. ...+..+........++..+.+|.+..++...-. ....+. ....|.++...+
T Consensus 148 ~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~ 225 (370)
T 3l6v_A 148 E-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEE 225 (370)
T ss_dssp T-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------
T ss_pred C-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccc
Confidence 3 2345555555555678888889998888764311 111222 234555554443
Q ss_pred -------------------CCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEEeC
Q 012699 346 -------------------DETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSG 406 (458)
Q Consensus 346 -------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 406 (458)
++..+++.+..|..+...+......................+.+..+.+..+...++..+.
T Consensus 226 ~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~ 305 (370)
T 3l6v_A 226 VVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISD 305 (370)
T ss_dssp ---------------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEET
T ss_pred cccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcC
Confidence 3457888999999988887643221100000001111112233444333334445555666
Q ss_pred CccEEEEEcc
Q 012699 407 SVRAPIYQVR 416 (458)
Q Consensus 407 ~~~i~i~~~~ 416 (458)
.|.+.-..+.
T Consensus 306 ~G~~iR~~v~ 315 (370)
T 3l6v_A 306 GGTLVRTRGS 315 (370)
T ss_dssp TCCEEEEEGG
T ss_pred CCeEEEeeHh
Confidence 6666555554
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.98 E-value=37 Score=32.79 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=28.8
Q ss_pred eEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccC
Q 012699 194 IMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNT 232 (458)
Q Consensus 194 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 232 (458)
|.++.+ +..++++-+.|.++|+|++.+++++.+...
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 444443 367899999999999999999998877655
No 378
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=52.07 E-value=1.8e+02 Score=28.42 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=34.3
Q ss_pred ceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCCC-----CCceeeeeecCCC
Q 012699 193 EIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTDA-----FPSVLDLKCSPVE 248 (458)
Q Consensus 193 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~ 248 (458)
.|..++++|.+...++++...+.|...+-. ++.-..+..... ...+.+++++|..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~ 83 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVD 83 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSS
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCC
Confidence 789999998777778888877776666533 332222222111 1358899999844
No 379
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=47.55 E-value=2.1e+02 Score=27.86 Aligned_cols=245 Identities=11% Similarity=0.066 Sum_probs=115.8
Q ss_pred EecCCCeEEEEEcCCC----cEEEEEcCCCceeee-ccCCCCCC------ceeeeeecCCCCeEEEeecccCCCCcceee
Q 012699 199 WECKSDRLLLIGTADG----GIKAWNVDAKRVVCD-LNTTDAFP------SVLDLKCSPVEPIFVSAAASRRYGSSNIYS 267 (458)
Q Consensus 199 ~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~-~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (458)
++|.....+++-+..| .++++|+.+++.+.. +. ..... .-..++|..+...++ +...... ..-..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~-~~~~~~~--~~~~~ 212 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIF-NLVLHKN--EITSS 212 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEE-CCCCSTT--CBCTT
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEE-EeCCCCC--CcCcC
Confidence 5543344444444333 799999999987632 11 11000 012347764444444 3222111 11111
Q ss_pred ccceeEEEEECCCCce--eEEeecCCCCCcEEEEEEccCCCE-----EEEEec---CCeEEEEeCCC--CceeeeeeCCC
Q 012699 268 WGFASLTVWNMKTWKA--MTVLPLGEDPPAITSLCFNHNGKI-----LAASAV---DGMIHMFDMSA--GLQITGWPAHD 335 (458)
Q Consensus 268 ~~~g~i~i~d~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~-----l~~~~~---dg~i~v~d~~~--~~~~~~~~~~~ 335 (458)
.-...++.|.+-+... ...+..... ..-.....++++++ +++.+. ...+++.|... ++ ...+....
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKE-YIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTT-SCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCC-ceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 1124788998876533 233432222 22334556667662 343331 24567777653 33 22332222
Q ss_pred CCeEEEEEcCCCCEEEEec----------CCCeEEEEeccCCCe-----eEEeecCCcccCCCCCCCceeEEEEccCCCE
Q 012699 336 SAISSILFGPDETSIFSLG----------SDGKIIEWSLQNQGQ-----VLWTRNCSRFCDPESSKSCRHEMALDVNGRR 400 (458)
Q Consensus 336 ~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 400 (458)
.. .+..++++.+++... ..+.|...++.+... ..+. .+. .......+..+.+..+ .+
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~-~l 362 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLK----ILF-TPTANEVFNFISTTKD-RV 362 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCE----EEE-CCCTTEEEEEEEECSS-CE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccce----EEE-CCCCCCeEEEEEEECC-EE
Confidence 21 123345555544321 356688888875310 0000 001 1123445777888876 56
Q ss_pred EEEEeCCc--cEEEEEccCCC-cccc-c-CCCCCcEEEEEECCCCC-eEEEecC---CCcEEEEeC
Q 012699 401 LLVTSGSV--RAPIYQVRGHA-SGMR-T-LPHGAAITTVDWHPTLP-MFLTGSA---DHSVQVMSL 457 (458)
Q Consensus 401 l~~~~~~~--~i~i~~~~~~~-~~~~-~-~~h~~~v~~~~~~~~~~-~l~s~~~---dg~v~iw~l 457 (458)
+++...++ .++++++.++. .... + .+..+.+....+++++. ++++.+. -+.+..+++
T Consensus 363 ~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 428 (711)
T 4hvt_A 363 FLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVK 428 (711)
T ss_dssp EEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred EEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeC
Confidence 66666665 57777776553 1222 1 12235677777777776 3333322 245555543
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.89 E-value=20 Score=37.35 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.6
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 332 (458)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45556677788899999999999999999998877653
No 381
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.16 E-value=41 Score=32.54 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=28.9
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeeee
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGWP 332 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 332 (458)
.|.++.+ +..++++-+.|.++|+|++++++++....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4555554 36799999999999999999998877654
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.77 E-value=77 Score=32.98 Aligned_cols=32 Identities=9% Similarity=0.004 Sum_probs=27.2
Q ss_pred ceeEEEEccCCCEEEEEeCCccEEEEEccCCC
Q 012699 388 CRHEMALDVNGRRLLVTSGSVRAPIYQVRGHA 419 (458)
Q Consensus 388 ~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~ 419 (458)
.+.+++..++..++++-+.|+++++|++.++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 45566777889999999999999999998764
No 383
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=31.91 E-value=3.7e+02 Score=26.19 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=56.3
Q ss_pred cEEEEEEccC-CCEEEEEecCCeEEEEeCCCCceeeeeeCC-------CCCeEEEEEcC-CCCEEEEecCC-------Ce
Q 012699 295 AITSLCFNHN-GKILAASAVDGMIHMFDMSAGLQITGWPAH-------DSAISSILFGP-DETSIFSLGSD-------GK 358 (458)
Q Consensus 295 ~i~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-------~~~v~~~~~~~-~~~~l~~~~~d-------g~ 358 (458)
.|..++++|. ...++++...+.|+..+-. ++.-..+..+ ...|.+|+++| +.+.++.+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 6899999996 3566677766777666532 3222222221 24589999998 33344433321 12
Q ss_pred EEEEeccCCCeeEEeecCC-cccCCCCCCCceeEEEEccC-CCEEEEEeC
Q 012699 359 IIEWSLQNQGQVLWTRNCS-RFCDPESSKSCRHEMALDVN-GRRLLVTSG 406 (458)
Q Consensus 359 i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~-g~~l~~~~~ 406 (458)
..||.-.+.+..-...... ...........+..++++|. ...|+++..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 4566655544322211111 00000001123467899985 356666653
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=30.73 E-value=1.6e+02 Score=27.06 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=43.1
Q ss_pred cEEEEEEccC----C--CEEEEEecCCeEEEEeCC-CCc-------eeeeeeC--CCCCeEEEEEcCCCCEEEEecCCCe
Q 012699 295 AITSLCFNHN----G--KILAASAVDGMIHMFDMS-AGL-------QITGWPA--HDSAISSILFGPDETSIFSLGSDGK 358 (458)
Q Consensus 295 ~i~~~~~~~~----~--~~l~~~~~dg~i~v~d~~-~~~-------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~ 358 (458)
..++++...- + ..++.|+.+|.|.-.-+. .+. .+..+.. ...+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4566666532 3 357789999987544332 211 2223332 3578999999999999999998876
Q ss_pred EEE
Q 012699 359 IIE 361 (458)
Q Consensus 359 i~i 361 (458)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 385
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=29.83 E-value=1.2e+02 Score=27.98 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=43.1
Q ss_pred ceeEEEEcc----CC--CEEEEEeCCccEEEEEccCCC--------ccc--ccCCCCCcEEEEEECCCCCeEEEecCCCc
Q 012699 388 CRHEMALDV----NG--RRLLVTSGSVRAPIYQVRGHA--------SGM--RTLPHGAAITTVDWHPTLPMFLTGSADHS 451 (458)
Q Consensus 388 ~v~~~~~s~----~g--~~l~~~~~~~~i~i~~~~~~~--------~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 451 (458)
..++++... ++ ..++.|+.+|.|.-.-+.... .+. .+.....+|..+.++++...|..++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 356666553 24 346788999987554442211 111 12234578999999999999999999887
Q ss_pred EEE
Q 012699 452 VQV 454 (458)
Q Consensus 452 v~i 454 (458)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=29.32 E-value=2.9e+02 Score=24.16 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=75.2
Q ss_pred cEEEEEEccCCCEEEEEecCCeEEEEeCCC-Cce----------eeeee-CCCCCeEEEEEcCCCCEEEEecCCCeEEEE
Q 012699 295 AITSLCFNHNGKILAASAVDGMIHMFDMSA-GLQ----------ITGWP-AHDSAISSILFGPDETSIFSLGSDGKIIEW 362 (458)
Q Consensus 295 ~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~----------~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 362 (458)
.|..++.. ....++-..+|.|+.|-... ++. ...+. .....|..++......+.+....||.|..|
T Consensus 160 ~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 46666554 33555556799999997543 110 01111 123356667664433466666789999999
Q ss_pred eccCCCeeE-------EeecCCcccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-----------ccc
Q 012699 363 SLQNQGQVL-------WTRNCSRFCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG-----------MRT 424 (458)
Q Consensus 363 d~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~-----------~~~ 424 (458)
=.....++- ..+. ... ......+..++. .....++-..+|.|+.|-......+ ..+
T Consensus 238 G~n~~GqLG~g~~~~~~~p~--~v~--~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 311 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPM--KID--SLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEE--ECG--GGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred eCCCCCCCCCCCCCCccccE--Eec--ccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEe
Confidence 755432210 0000 000 001112443333 3344555577888888876432111 011
Q ss_pred CC-CCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 425 LP-HGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 425 ~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
.. ....|..++... ...+....||.|+.|-
T Consensus 312 ~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG 342 (389)
T 3kci_A 312 QGLQGKKVIAIATGS--LHCVCCTEDGEVYTWG 342 (389)
T ss_dssp GGGTTCCEEEEEECS--SEEEEEETTCCEEEEE
T ss_pred ccCCCCCEEEEEecc--CeEEEECCCCCEEEee
Confidence 11 112455555432 2344456788888884
No 387
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.47 E-value=5.2e+02 Score=26.18 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCCceeeee
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAGLQITGW 331 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 331 (458)
..+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888888889999999999999999999887765
No 388
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=26.09 E-value=3.4e+02 Score=23.97 Aligned_cols=156 Identities=8% Similarity=-0.029 Sum_probs=72.6
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCCC-c----------------------eeeeeeCCCCCeEEEEEcCCCCEE
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSAG-L----------------------QITGWPAHDSAISSILFGPDETSI 350 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~----------------------~~~~~~~~~~~v~~~~~~~~~~~l 350 (458)
..|..++... ...++-..+|.|+.|-.... + +..........|..++.... ..+
T Consensus 179 ~~i~~va~G~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~ 255 (423)
T 3mvd_K 179 TVCCSIASGA--DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTF 255 (423)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEE
T ss_pred CcEEEEecCC--CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCc-EEE
Confidence 3466666543 34555568999999964321 1 11111112234555554322 223
Q ss_pred EEecCCCeEEEEeccCCCeeEEeec-CCc-ccCCCCCCCceeEEEEccCCCEEEEEeCCccEEEEEccCCCcc-------
Q 012699 351 FSLGSDGKIIEWSLQNQGQVLWTRN-CSR-FCDPESSKSCRHEMALDVNGRRLLVTSGSVRAPIYQVRGHASG------- 421 (458)
Q Consensus 351 ~~~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~~i~i~~~~~~~~~------- 421 (458)
+.-..+|.+..|-.....++-.... ... ..........|..++ ......++-..+|.|+.|-......+
T Consensus 256 ~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia--~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~ 333 (423)
T 3mvd_K 256 MRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIA--GGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKD 333 (423)
T ss_dssp EEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEE--ECSSEEEEEETTCCEEEEECCGGGTTCSSSCCS
T ss_pred EEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEE--cccCeEEEEeCCCcEEEEECCCCCCCCCCCccc
Confidence 3336789999997654322110000 000 000000012344333 34445556677888888865432111
Q ss_pred -----cccCCCCCcEEEEEECCCCCeEEEecCCCcEEEEe
Q 012699 422 -----MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQVMS 456 (458)
Q Consensus 422 -----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw~ 456 (458)
..+..-...|..++.... .-+.-..||.|+.|-
T Consensus 334 ~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG 371 (423)
T 3mvd_K 334 VVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWG 371 (423)
T ss_dssp CEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred cccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEEC
Confidence 111111225666665432 333346788888884
No 389
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.08 E-value=13 Score=23.02 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHhhccccCCCcceee
Q 012699 2 KLSQLQALLEEKEAQLSRLKNNSETIKY 29 (458)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~h~~~i~~ 29 (458)
.+++|+..++++..+++.|+.+-....+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888899999999998887666544
No 390
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=25.24 E-value=1.5e+02 Score=28.01 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=37.9
Q ss_pred CEEEEEeCCccEEEEEccCCCc---c-----cccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 399 RRLLVTSGSVRAPIYQVRGHAS---G-----MRTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 399 ~~l~~~~~~~~i~i~~~~~~~~---~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
..+..|+.+|+|.-.-+..... . ........+|..+.++++...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 3667888899876444332210 1 111135578999999999999999998877775
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.62 E-value=1.9e+02 Score=27.02 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=43.2
Q ss_pred cEEEEEEccCC--CEEEEEecCCeEEEEeCCCCc----eeeeee--CCCCCeE-EEEEcCCCCEEEEecCCCeEEE
Q 012699 295 AITSLCFNHNG--KILAASAVDGMIHMFDMSAGL----QITGWP--AHDSAIS-SILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 295 ~i~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~----~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i 361 (458)
.+++++....+ ..++.|+.+|.|.-..+.... .+..+. ....+|. .|.++++..+|+.++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 36666665533 467889999987665554321 222232 2246785 8999999999999887754444
No 392
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.98 E-value=3.1e+02 Score=22.37 Aligned_cols=72 Identities=7% Similarity=0.246 Sum_probs=47.2
Q ss_pred CcEEEEEEccCCCEEEEEecCCeEEEEeCCC-------CceeeeeeCCCCCeEEEEEc-CCCCEEEEecCCCeEEEEecc
Q 012699 294 PAITSLCFNHNGKILAASAVDGMIHMFDMSA-------GLQITGWPAHDSAISSILFG-PDETSIFSLGSDGKIIEWSLQ 365 (458)
Q Consensus 294 ~~i~~~~~~~~~~~l~~~~~dg~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 365 (458)
..|..+....++.+|+.++..|.++...+.. +.....+.. .+.+..+... .+...++..+.+|.+..+++.
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 4566664434566788889999999988743 223333433 2445454454 345578888999999989886
Q ss_pred C
Q 012699 366 N 366 (458)
Q Consensus 366 ~ 366 (458)
.
T Consensus 163 e 163 (256)
T 1zvt_A 163 D 163 (256)
T ss_dssp G
T ss_pred H
Confidence 4
No 393
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=22.63 E-value=2.9e+02 Score=26.06 Aligned_cols=56 Identities=13% Similarity=0.117 Sum_probs=36.9
Q ss_pred CEEEEEecCCeEEEEeC-CCC----c-eeeeee--CCCCCeEEEEEcCCCCEEEEecCCCeEEE
Q 012699 306 KILAASAVDGMIHMFDM-SAG----L-QITGWP--AHDSAISSILFGPDETSIFSLGSDGKIIE 361 (458)
Q Consensus 306 ~~l~~~~~dg~i~v~d~-~~~----~-~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 361 (458)
..++.|+.+|.|.-.-. ..+ . .+..+. ....+|..+.++++...|+.++.++.+++
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 36778999998764333 222 1 122222 24568999999999889998887766555
No 394
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=22.50 E-value=1.9e+02 Score=19.62 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=24.4
Q ss_pred EEEEcCCCCEEEEecCCCeEEEEeccCCCeeEEeecCCcccCCCCCCCceeEEEEccCCCEEEEE
Q 012699 340 SILFGPDETSIFSLGSDGKIIEWSLQNQGQVLWTRNCSRFCDPESSKSCRHEMALDVNGRRLLVT 404 (458)
Q Consensus 340 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 404 (458)
.+.+..||.+++... ++. .+|...+. .......+.+-++|.+++.+
T Consensus 54 ~L~l~~dGnLvL~d~-~~~-~vWss~t~-----------------~~~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDS-SGR-SLWASHST-----------------RGSGNYILILQDDGNVIIYG 99 (105)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCCC-----------------CCSSCEEEEECTTSCEEEEE
T ss_pred EEEEeCCccEEEECC-CcE-EEEEecCC-----------------CCCCCEEEEEeCCCeEEEEC
Confidence 466777777665433 332 35654431 11112346677777777653
No 395
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.16 E-value=6e+02 Score=24.99 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=36.3
Q ss_pred CCceEEEEEecCCCeEEEEEcCCCcEEEEEcCCCceeeeccCCC-----CCCceeeeeecCCC
Q 012699 191 GTEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTD-----AFPSVLDLKCSPVE 248 (458)
Q Consensus 191 ~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~ 248 (458)
...|.+++++|.+...+++++..+.|...+ +.++.-..+.... ....+.++++.|..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~ 75 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNN 75 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCC
Confidence 468999999987777788888777766554 2333322222211 12368899998854
No 396
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=20.37 E-value=5.4e+02 Score=24.16 Aligned_cols=65 Identities=17% Similarity=0.031 Sum_probs=41.0
Q ss_pred CceeEEeecCCCCCcEEEEEEccC--CCEEEEEecCC----eEEEEeCCCCceeeeeeCC--CCCeEEEEEcCC
Q 012699 281 WKAMTVLPLGEDPPAITSLCFNHN--GKILAASAVDG----MIHMFDMSAGLQITGWPAH--DSAISSILFGPD 346 (458)
Q Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg----~i~v~d~~~~~~~~~~~~~--~~~v~~~~~~~~ 346 (458)
++.+....+ +|...+....|.|+ |..++.+.+++ -..+.|..+++.+...... .+......|.|+
T Consensus 352 G~~L~st~~-gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 352 GKGMYSTGL-GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp SCEEEECSC-CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred CCEeeeCCC-CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
Confidence 444444443 67777777788887 44666665541 3556899999998877543 344444556664
No 397
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=20.33 E-value=2.2e+02 Score=27.44 Aligned_cols=55 Identities=7% Similarity=0.049 Sum_probs=0.0
Q ss_pred EEEEEeCCccEEEEEccCCCccc----------ccCCCCCcEEEEEECCCCCeEEEecCCCcEEE
Q 012699 400 RLLVTSGSVRAPIYQVRGHASGM----------RTLPHGAAITTVDWHPTLPMFLTGSADHSVQV 454 (458)
Q Consensus 400 ~l~~~~~~~~i~i~~~~~~~~~~----------~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 454 (458)
.++.|+.+|.|.-.-+....... .......+|..+.++++...|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Done!