BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012700
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R4Y|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Y|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) From Saccharophagus Degradans 2-40
pdb|3R4Z|A Chain A, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
pdb|3R4Z|B Chain B, Crystal Structure Of Alpha-Neoagarobiose Hydrolase
(Alpha-Nabh) In Complex With Alpha-D-Galactopyranose
From Saccharophagus Degradans 2- 40
Length = 374
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 314 ARSRDGIKWVKLGKIMGGGIRGSFDEFGVKNACVARNKKDGKYLMAYEGVGAD----GSS 369
A S+D I W ++G + G G++D+ V V R+ +G Y + Y+ V A
Sbjct: 97 ATSKDKITWKEIGPAIQRGAAGAYDDRAVFTPEVLRH--NGTYYLVYQTVKAPYLNRSLE 154
Query: 370 SIGLAVSTGGLKGWRRFQDNTMLKAE 395
I +A S W + D +L E
Sbjct: 155 HIAIAYSDSPFGPWTK-SDAPILSPE 179
>pdb|1YXI|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YYZ|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|A Chain A, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
pdb|1YZ0|B Chain B, R-State Amp Complex Reveals Initial Steps Of The
Quaternary Transition Of Fructose-1,6-Bisphosphatase
Length = 337
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1FRP|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphatase Complexed
With Fructose-2,6-Bisphosphate, Amp And Zn2+ At 2.0
Angstroms Resolution. Aspects Of Synergism Between
Inhibitors
pdb|1FRP|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphatase Complexed
With Fructose-2,6-Bisphosphate, Amp And Zn2+ At 2.0
Angstroms Resolution. Aspects Of Synergism Between
Inhibitors
Length = 335
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|2F3B|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-bisphosphatase
pdb|2F3D|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
pdb|2F3H|A Chain A, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
pdb|2F3H|B Chain B, Mechanism Of Displacement Of A Catalytically Essential
Loop From The Active Site Of Fructose-1,6-Bisphosphatase
Length = 338
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 101 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 141
>pdb|1FBP|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphatase Complexed
With Fructose 6-Phosphate, Amp, And Magnesium
pdb|1FBP|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphatase Complexed
With Fructose 6-Phosphate, Amp, And Magnesium
pdb|2FBP|A Chain A, Structure Refinement Of Fructose-1,6-bisphosphatase And
Its Fructose 2,6-bisphosphate Complex At 2.8 Angstroms
Resolution
pdb|2FBP|B Chain B, Structure Refinement Of Fructose-1,6-bisphosphatase And
Its Fructose 2,6-bisphosphate Complex At 2.8 Angstroms
Resolution
pdb|3FBP|A Chain A, Structure Refinement Of Fructose-1,6-Bisphosphatase And
Its Fructose 2,6-Bisphosphate Complex At 2.8 Angstroms
Resolution
pdb|3FBP|B Chain B, Structure Refinement Of Fructose-1,6-Bisphosphatase And
Its Fructose 2,6-Bisphosphate Complex At 2.8 Angstroms
Resolution
pdb|4FBP|A Chain A, Conformational Transition Of Fructose-1,6-Bisphosphatase:
Structure Comparison Between The Amp Complex (T Form)
And The Fructose 6-Phosphate Complex (R Form)
pdb|4FBP|B Chain B, Conformational Transition Of Fructose-1,6-Bisphosphatase:
Structure Comparison Between The Amp Complex (T Form)
And The Fructose 6-Phosphate Complex (R Form)
pdb|4FBP|C Chain C, Conformational Transition Of Fructose-1,6-Bisphosphatase:
Structure Comparison Between The Amp Complex (T Form)
And The Fructose 6-Phosphate Complex (R Form)
pdb|4FBP|D Chain D, Conformational Transition Of Fructose-1,6-Bisphosphatase:
Structure Comparison Between The Amp Complex (T Form)
And The Fructose 6-Phosphate Complex (R Form)
pdb|5FBP|A Chain A, Crystal Structure Of The Neutral Form Of
Fructose-1,6-Bisphosphatase Complexed With The Product
Fructose 6-Phosphate At 2.1-Angstroms Resolution
pdb|5FBP|B Chain B, Crystal Structure Of The Neutral Form Of
Fructose-1,6-Bisphosphatase Complexed With The Product
Fructose 6-Phosphate At 2.1-Angstroms Resolution
pdb|1FBC|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FBC|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FBD|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBD|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBE|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FBE|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FBF|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBF|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBG|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBG|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-bisphosphatase
pdb|1FBH|A Chain A, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FBH|B Chain B, Crystallographic Studies Of The Catalytic Mechanism Of The
Neutral Form Of Fructose-1,6-Bisphosphatase
pdb|1FPB|A Chain A, Crystal Structure Of The Neutral Form Of Fructose
1,6-Bisphosphatase Complexed With Regulatory Inhibitor
Fructose 2,6-Bisphosphate At 2.6- Angstroms Resolution
pdb|1FPB|B Chain B, Crystal Structure Of The Neutral Form Of Fructose
1,6-Bisphosphatase Complexed With Regulatory Inhibitor
Fructose 2,6-Bisphosphate At 2.6- Angstroms Resolution
pdb|1FPD|A Chain A, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-anhydro-d-glucitol-1,6-bisphosphate And Catalytic
Metal Ions Monitored By X-ray Crystallography
pdb|1FPD|B Chain B, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-anhydro-d-glucitol-1,6-bisphosphate And Catalytic
Metal Ions Monitored By X-ray Crystallography
pdb|1FPE|A Chain A, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-Anhydro-D-Glucitol-1,6-Bisphosphate And Catalytic
Metal Ions Monitored By X-Ray Crystallography
pdb|1FPE|B Chain B, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-Anhydro-D-Glucitol-1,6-Bisphosphate And Catalytic
Metal Ions Monitored By X-Ray Crystallography
pdb|1FPF|A Chain A, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-Anhydro-D-Glucitol-1,6-Bisphosphate And Catalytic
Metal Ions Monitored By X-Ray Crystallography
pdb|1FPF|B Chain B, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-Anhydro-D-Glucitol-1,6-Bisphosphate And Catalytic
Metal Ions Monitored By X-Ray Crystallography
pdb|1FPG|A Chain A, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-anhydro-d-glucitol-1,6-bisphosphate And Catalytic
Metal Ions Monitored By X-ray Crystallography
pdb|1FPG|B Chain B, Structural Aspects Of The Allosteric Inhibition Of
Fructose-1,6- Bisphosphatase By Amp: The Binding Of Both
The Substrate Analogue 2,
5-anhydro-d-glucitol-1,6-bisphosphate And Catalytic
Metal Ions Monitored By X-ray Crystallography
pdb|1FPL|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate And Thallium
Ions (10 Mm)
pdb|1FPL|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate And Thallium
Ions (10 Mm)
pdb|1FPK|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Thallium Ions (10
Mm)
pdb|1FPK|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Thallium Ions (10
Mm)
pdb|1FPJ|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate, Thallium (10
Mm) And Lithium Ions (10 Mm)
pdb|1FPJ|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate, Thallium (10
Mm) And Lithium Ions (10 Mm)
pdb|1FPI|A Chain A, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate And Potassium
Ions (100 Mm)
pdb|1FPI|B Chain B, Fructose-1,6-Bisphosphatase (D-Fructose-1,6-Bisphosphate
1- Phosphohydrolase) Complexed With Amp,
2,5-Anhydro-D-Glucitol-1,6- Bisphosphate And Potassium
Ions (100 Mm)
Length = 335
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1FJ6|A Chain A, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductZN
COMPLEX (R-State)
pdb|1FJ9|A Chain A, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductsZNAMP
COMPLEX (T- State)
pdb|1FJ9|B Chain B, Fructose-1,6-Bisphosphatase (Mutant Y57w) ProductsZNAMP
COMPLEX (T- State)
Length = 337
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1RDX|A Chain A, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDX|B Chain B, R-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDY|A Chain A, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDY|B Chain B, T-state Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-bisphosphatase Expressed In E. Coli
pdb|1RDZ|A Chain A, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1RDZ|B Chain B, T-State Structure Of The Arg 243 To Ala Mutant Of Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
Length = 337
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1LEV|A Chain A, Porcine Kidney Fructose-1,6-bisphosphatase Complexed With
An Amp-site Inhibitor
pdb|1LEV|F Chain F, Porcine Kidney Fructose-1,6-bisphosphatase Complexed With
An Amp-site Inhibitor
Length = 337
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1CNQ|A Chain A, Fructose-1,6-Bisphosphatase Complexed With
Fructose-6-Phosphate And Zinc Ions
pdb|1EYI|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate (R-State)
pdb|1EYJ|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYJ|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYK|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Zinc,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1EYK|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Zinc,
Fructose-6- Phosphate And Phosphate (T-State)
pdb|1NUW|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate At Ph 9.6
pdb|1NUX|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Inhibitory
Concentrations Of Potassium (200mm)
pdb|1NUY|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, And Phosphate
pdb|1NUZ|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate And Phosphate
pdb|1NV0|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And 1 Mm Thallium
pdb|1NV1|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (5 Mm)
pdb|1NV2|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (20 Mm)
pdb|1NV3|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate And Thallium (100 Mm)
pdb|1NV4|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (1
Mm)
pdb|1NV5|A Chain A, Fructose-1,6-Bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (5
Mm)
pdb|1NV6|A Chain A, Fructose-1,6-bisphosphatase Complex With Magnesium,
Fructose-6- Phosphate, Phosphate, Edta And Thallium (20
Mm)
pdb|1NV7|A Chain A, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6-Phosphate, Phosphate And Thallium (20 Mm)
pdb|1NV7|B Chain B, Fructose-1,6-Bisphosphatase Complex With Amp, Magnesium,
Fructose-6-Phosphate, Phosphate And Thallium (20 Mm)
pdb|1Q9D|A Chain A, Fructose-1,6-Bisphosphatase Complexed With A New
Allosteric Site Inhibitor (I-State)
pdb|1Q9D|B Chain B, Fructose-1,6-Bisphosphatase Complexed With A New
Allosteric Site Inhibitor (I-State)
pdb|2QVU|A Chain A, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Mg2+, I(T)-State
pdb|2QVU|B Chain B, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Mg2+, I(T)-State
pdb|2QVV|A Chain A, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Zn2+, I(T)-State
pdb|2QVV|B Chain B, Porcine Liver Fructose-1,6-Bisphosphatase Cocrystallized
With Fru-2,6- P2 And Zn2+, I(T)-State
Length = 337
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1FSA|A Chain A, The T-State Structure Of Lys 42 To Ala Mutant Of The Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
pdb|1FSA|B Chain B, The T-State Structure Of Lys 42 To Ala Mutant Of The Pig
Kidney Fructose 1,6-Bisphosphatase Expressed In E. Coli
Length = 337
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1KZ8|A Chain A, Crystal Structure Of Porcine Fructose-1,6-bisphosphatase
Complexed With A Novel Allosteric-site Inhibitor
pdb|1KZ8|F Chain F, Crystal Structure Of Porcine Fructose-1,6-bisphosphatase
Complexed With A Novel Allosteric-site Inhibitor
Length = 337
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|1BK4|A Chain A, Crystal Structure Of Rabbit Liver
Fructose-1,6-Bisphosphatase At 2.3 Angstrom Resolution
Length = 337
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 343 KNACVARNKKDGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRR 385
KNA + +K GKY++ ++ + DGSS+I VS G + G R
Sbjct: 100 KNAIIVEPEKRGKYVVCFDPL--DGSSNIDCLVSIGTIFGIYR 140
>pdb|4AK5|A Chain A, Native Crystal Structure Of Bpgh117
pdb|4AK5|B Chain B, Native Crystal Structure Of Bpgh117
Length = 404
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 311 IGIARSRDGIKWVKLGKIMGGGIRGSFDEFGVKNACVARNKKDGKYLMAYEGVGADGS-- 368
I A S+DG+ W + G + G +G++D+ V V K GKY + Y+ V + +
Sbjct: 134 IWYATSKDGLTWKEQGIAVKRGEKGAYDDRSVFTPEVMEWK--GKYYLCYQAVKSPYTVR 191
Query: 369 --SSIGLAVS 376
++IG+A +
Sbjct: 192 VKNTIGMACA 201
>pdb|4AK6|A Chain A, Bpgh117_h302e Mutant Glycoside Hydrolase
pdb|4AK6|B Chain B, Bpgh117_h302e Mutant Glycoside Hydrolase
Length = 404
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 311 IGIARSRDGIKWVKLGKIMGGGIRGSFDEFGVKNACVARNKKDGKYLMAYEGVGADGS-- 368
I A S+DG+ W + G + G +G++D+ V V K GKY + Y+ V + +
Sbjct: 134 IWYATSKDGLTWKEQGIAVKRGEKGAYDDRSVFTPEVMEWK--GKYYLCYQAVKSPYTVR 191
Query: 369 --SSIGLAVS 376
++IG+A +
Sbjct: 192 VKNTIGMACA 201
>pdb|4AK7|A Chain A, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
pdb|4AK7|B Chain B, Crystal Structure Of Bpgh117_e303q In Complex With
Neoagarobiose
Length = 404
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 311 IGIARSRDGIKWVKLGKIMGGGIRGSFDEFGVKNACVARNKKDGKYLMAYEGVGADGS-- 368
I A S+DG+ W + G + G +G++D+ V V K GKY + Y+ V + +
Sbjct: 134 IWYATSKDGLTWKEQGIAVKRGEKGAYDDRSVFTPEVMEWK--GKYYLCYQAVKSPYTVR 191
Query: 369 --SSIGLAVS 376
++IG+A +
Sbjct: 192 VKNTIGMACA 201
>pdb|3SQ3|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
pdb|3SQ3|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H182a Mutant
Length = 470
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 202 SSEKMNFLDYDSLEFNLENPERFQVGNLLSGENGLKRKINKSLPGLAISQDGRHW 256
S E++NF LEF P +FQ LLS N K+ K G + S +H+
Sbjct: 179 SVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYN----KLEKLSAGTSASDTAKHY 229
>pdb|3SQ5|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
pdb|3SQ5|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n Mutant
Length = 470
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 202 SSEKMNFLDYDSLEFNLENPERFQVGNLLSGENGLKRKINKSLPGLAISQDGRHW 256
S E++NF LEF P +FQ LLS N K+ K G + S +H+
Sbjct: 179 SVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYN----KLEKLSAGTSASDTAKHY 229
>pdb|3SQ8|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
pdb|3SQ8|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase 1 H432r Mutant (Scan1 Mutant)
Length = 470
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 202 SSEKMNFLDYDSLEFNLENPERFQVGNLLSGENGLKRKINKSLPGLAISQDGRHW 256
S E++NF LEF P +FQ LLS N K+ K G + S +H+
Sbjct: 179 SVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYN----KLEKLSAGTSASDTAKHY 229
>pdb|3SQ7|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
pdb|3SQ7|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase H432n_glu Mutant
Length = 470
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 202 SSEKMNFLDYDSLEFNLENPERFQVGNLLSGENGLKRKINKSLPGLAISQDGRHW 256
S E++NF LEF P +FQ LLS N K+ K G + S +H+
Sbjct: 179 SVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYN----KLEKLSAGTSASDTAKHY 229
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 202 SSEKMNFLDYDSLEFNLENPERFQVGNLLSGENGLKRKINKSLPGLAISQDGRHW 256
S E++NF LEF P +FQ LLS N K+ K G + S +H+
Sbjct: 256 SVEEVNFAPLSELEFVYSTPSKFQSSGLLSFYN----KLEKLSAGTSASDTAKHY 306
>pdb|4HFF|A Chain A, Crystal Structure Of The Type Vi Effector-immunity Complex
Tae4-tai4 From Salmonella Typhimurium
Length = 175
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 14 YAPRVNNLLSFLTHCSTKPDTNTNNETDQD 43
Y RVN+ + +LTH KPD NN D
Sbjct: 90 YIYRVNDXIDYLTHTXGKPDLIVNNPKQSD 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,870,467
Number of Sequences: 62578
Number of extensions: 664541
Number of successful extensions: 1072
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 26
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)