BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012700
         (458 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P71783|Y1502_MYCTU Uncharacterized protein Rv1502/MT1551 OS=Mycobacterium tuberculosis
           GN=Rv1502 PE=4 SV=1
          Length = 299

 Score = 40.4 bits (93), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 35/211 (16%)

Query: 242 KSLPGLAISQDGRHWARIEGEHHSGALFDVGSDEDWDSLFIAAPQVVFHGNGDLRMYYHS 301
           K+  G+AIS+ G  + R        + F V + ++ D   ++ P V+  G G  RM+Y S
Sbjct: 114 KNTIGVAISEAGAPFERW-------STFPVVALDERDPFSLSYPWVIQDG-GTYRMWYGS 165

Query: 302 FDVEKGE------FGIGIARSRDGIKWVKLGKIMGGGIRGSFDEFGVKNACVARN---KK 352
            ++  GE        I  A+SRDG+ W K  ++         D  G  N+   R    + 
Sbjct: 166 -NLGWGEGTDEIPHVIRYAQSRDGVHWEKQDRV-------HIDTSGSDNSAACRPYVVRD 217

Query: 353 DGKYLMAYEGVGADGSSSIGLAVSTGGLKGWRRFQDNTMLKAEVEAEDGWDNKGIGSPYL 412
            G Y M +   GA     I  A S  GL  WR+   +  +     + D WD+  I  P +
Sbjct: 218 AGVYRMWFCARGA--KYRIYCATSEDGLT-WRQLGKDEGIDV---SPDSWDSDMIEYPCV 271

Query: 413 VQMDGDSDEWRLYYRGIGNGGRTGIGLAVSE 443
               G      + Y G G  GRTG GLAV E
Sbjct: 272 FDHRGQR---FMLYSGDGY-GRTGFGLAVLE 298


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.133    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,991,858
Number of Sequences: 539616
Number of extensions: 8843893
Number of successful extensions: 46541
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 124
Number of HSP's that attempted gapping in prelim test: 35560
Number of HSP's gapped (non-prelim): 7999
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)