BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012701
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHV-IYRYSILT 227
E +DP + W LP +T ++ S +++ + V G +S V Y+
Sbjct: 34 EKYDPKTQEWSFLPSITRKRRYVAS----VSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 228 NS-WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN 286
+ W S MN R L G+ +LG++ ++GG D +S E Y+ W +L M+
Sbjct: 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD-GSRRHTSMERYDPNIDQWSMLGDMQT 148
Query: 287 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEM 346
R+ V G Y +GG G + +L E+YD T WT + M+ R GA
Sbjct: 149 AREGAGLVVASGVIYCLGGYDGLN--ILNSVEKYDPHTGHWTNVTPMATKRSGAG----- 201
Query: 347 PASAEAPPLVAVVNNELYAADYAD-----MEVRKYDKERRLWFTI 386
VA++N+ +Y D V Y+ W T+
Sbjct: 202 ---------VALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 8/169 (4%)
Query: 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN 228
E +DP +W L M + + L V + ++ +I + + +Y T
Sbjct: 131 ERYDPNIDQWSMLGDMQT-----AREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185
Query: 229 SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 288
W++ M R G A L + + GG D + LSS E YN T +W + SM PR
Sbjct: 186 HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 289 KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 337
+ G+ Y I G G + +L+ E YD ++W + +M R
Sbjct: 245 CYVGATVLRGRLYAIAGYDG--NSLLSSIECYDPIIDSWEVVTSMGTQR 291
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 236 MNAPRCLFGSASLG--EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293
M PR A LG E+ ++ GG + + + E Y+ +TQ W LPS+ R+ +
Sbjct: 2 MQGPRT---RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVAS 58
Query: 294 VFMDGKFYVIGGIGG-SDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344
V + + YVIGG G S + C + E W + M+ RG A T
Sbjct: 59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 82/229 (35%), Gaps = 30/229 (13%)
Query: 195 KESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAIL 254
+ L LLV G + V+ +Y T WS + R S SL + +
Sbjct: 8 RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYV 67
Query: 255 AGGSDLEGNILSSAEMYN---SETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDS 311
GG D LSS E + E W + M R + + YV GG G S
Sbjct: 68 IGGYDGRSR-LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG--S 124
Query: 312 KVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD- 370
+ T E YD + W+ + +M AR GA + V + +Y D
Sbjct: 125 RRHTSMERYDPNIDQWSMLGDMQTAREGAG--------------LVVASGVIYCLGGYDG 170
Query: 371 ----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415
V KYD W + + A +G G+A D + V+GG
Sbjct: 171 LNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVAL--LNDHIYVVGG 214
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 223 YSILTNSWSSGMRMNAPR-CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281
Y+++ +SW S + PR L A+ G+I +GGS++ + L E Y++ T++W
Sbjct: 75 YNVVKDSWYSKLGPPTPRDSLAACAAEGKI-YTSGGSEVGNSALYLFECYDTRTESWHTK 133
Query: 282 PSMKNPRKMCSGVFMDGKFYVIGGIGGSD--SKVLTCGEEYDLETETWTEIPNMSPAR 337
PSM R V +G YV GG G++ +VL E YD TETWTE+ M AR
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR 191
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGS---DLEGNILSSAEMYNSETQTWK 279
Y T SW + M RC G + + GGS ++ G +L+S E+Y+ T+TW
Sbjct: 123 YDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182
Query: 280 VLPSMKNPRKMCSGVFMDGKFYVIG---GIGGSDSKVLTCGEEYDLETETWTEIPNMSPA 336
L M RK VF+ K + +G G+GG D+ E YD++ W + M P
Sbjct: 183 ELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNV-----EYYDIKLNEWKMVSPM-PW 236
Query: 337 RG 338
+G
Sbjct: 237 KG 238
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 79/210 (37%), Gaps = 34/210 (16%)
Query: 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGG--IGG 308
+ + GGS L + + YN +W PR + +GK Y GG +G
Sbjct: 57 VVYILGGSQLFP--IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGN 114
Query: 309 SDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV----VNNELY 364
S + C YD TE+W P+M R + G EA L+ V + N +
Sbjct: 115 SALYLFEC---YDTRTESWHTKPSMLTQR--CSHGM-----VEANGLIYVCGGSLGNNVS 164
Query: 365 AADYADMEVRKYDKERRLWFTIGRLPE-RANSMNGWGLAFRACGDRLIVIGGPKASG--- 420
EV YD W + + E R N GL F D++ +GG G
Sbjct: 165 GRVLNSCEV--YDPATETWTELCPMIEARKNH----GLVFVK--DKIFAVGGQNGLGGLD 216
Query: 421 --EGF-IELNSWVPSEGPPQWNLLARKQSA 447
E + I+LN W P W + K +A
Sbjct: 217 NVEYYDIKLNEW-KMVSPMPWKGVTVKCAA 245
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 228 NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
N W MN R G L AGG D + + L+S E Y+ ET+TW + M++
Sbjct: 188 NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMRHH 246
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEM 346
R GK YV+GG G L E YD +++TW+E+ M+ R G M
Sbjct: 247 RSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 303
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 68/174 (39%), Gaps = 18/174 (10%)
Query: 169 EAFDPIRRRW-----MHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRY 223
+ ++P+ +W M +PR + D AVG G HH S + RY
Sbjct: 87 DCYNPMTNQWSPCASMSVPRNRIGVGVI--DGHIYAVG------GSHGCIHHSS--VERY 136
Query: 224 SILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS 283
+ W M R G A L + GG D N L+SAE Y E W+++
Sbjct: 137 EPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMITP 195
Query: 284 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 337
M R + Y GG G D L E YD+ETETWT + M R
Sbjct: 196 MNTIRSGAGVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMRHHR 247
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 24/172 (13%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSD--LEGNILSSA-EMYNSETQTWK 279
Y+ SW + PR +G + GG + +GN SSA + YN T W
Sbjct: 38 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 97
Query: 280 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGG 339
SM PR +DG Y +GG G + E Y+ E + W + M R G
Sbjct: 98 PCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--SSVERYEPERDEWHLVAPMLTRRIG 155
Query: 340 AARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK-----YDKERRLWFTI 386
VAV+N LYA D R Y ER W I
Sbjct: 156 VG--------------VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 193
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIG 304
+ +G + AGG + LS E YN +W L ++ PR +G + G Y +G
Sbjct: 14 APKVGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVG 71
Query: 305 GI-----GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV 359
G G +DS L C Y+ T W+ +MS R V V+
Sbjct: 72 GRNNSPDGNTDSSALDC---YNPMTNQWSPCASMSVPRNRIG--------------VGVI 114
Query: 360 NNELYAADYA-----DMEVRKYDKERRLWFTIGRLPER 392
+ +YA + V +Y+ ER W + + R
Sbjct: 115 DGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTR 152
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 228 NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
N W MN R G L AGG D + + L+S E Y+ ET+TW + M++
Sbjct: 187 NEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMRHH 245
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEM 346
R GK YV+GG G L E YD +++TW+E+ M+ R G M
Sbjct: 246 RSALGITVHQGKIYVLGGYDG--HTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 302
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 68/174 (39%), Gaps = 18/174 (10%)
Query: 169 EAFDPIRRRW-----MHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRY 223
+ ++P+ +W M +PR + D AVG G HH S + RY
Sbjct: 86 DCYNPMTNQWSPCASMSVPRNRIGVGVI--DGHIYAVG------GSHGCIHHSS--VERY 135
Query: 224 SILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS 283
+ W M R G A L + GG D N L+SAE Y E W+++
Sbjct: 136 EPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMITP 194
Query: 284 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 337
M R + Y GG G D L E YD+ETETWT + M R
Sbjct: 195 MNTIRSGAGVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMRHHR 246
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 62/172 (36%), Gaps = 24/172 (13%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSD--LEGNILSSA-EMYNSETQTWK 279
Y+ SW + PR +G + GG + +GN SSA + YN T W
Sbjct: 37 YNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 96
Query: 280 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGG 339
SM PR +DG Y +GG G + E Y+ E + W + M R G
Sbjct: 97 PCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHH--SSVERYEPERDEWHLVAPMLTRRIG 154
Query: 340 AARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK-----YDKERRLWFTI 386
VAV+N LYA D R Y ER W I
Sbjct: 155 VG--------------VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI 192
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIG 304
+ +G + AGG + LS E YN +W L ++ PR +G + G Y +G
Sbjct: 13 APKVGRLIYTAGGYFRQS--LSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVG 70
Query: 305 GI-----GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV 359
G G +DS L C Y+ T W+ +MS R V V+
Sbjct: 71 GRNNSPDGNTDSSALDC---YNPMTNQWSPCASMSVPRNRIG--------------VGVI 113
Query: 360 NNELYAADYA-----DMEVRKYDKERRLWFTIGRLPER 392
+ +YA + V +Y+ ER W + + R
Sbjct: 114 DGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTR 151
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 228 NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
N W MN R G L AGG D + + L+S E Y+ ET+TW + MK+
Sbjct: 194 NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMKHR 252
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAA 341
R G+ YV+GG G L E YD +T+TW+E+ M+ R G
Sbjct: 253 RSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVG 304
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 97/265 (36%), Gaps = 36/265 (13%)
Query: 160 YFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFG---RELTAHHI 216
YF L EA++P W+ L + S VG L G +
Sbjct: 33 YFRQSLSYLEAYNPSDGTWLRLADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNTD 88
Query: 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNI-LSSAEMYNSET 275
S + Y+ +TN WS M+ PR G + GGS G I +S E Y E
Sbjct: 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS--HGCIHHNSVERYEPER 146
Query: 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335
W ++ M R ++ Y +GG G++ L E Y E W I M+
Sbjct: 147 DEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPERNEWRMITAMNT 204
Query: 336 ARGGAARGTEMPASAEAPPLVAVVNNELYAADYADME-----VRKYDKERRLWFTIGRLP 390
R GA V V++N +YAA D + V +YD E W + +
Sbjct: 205 IRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 250
Query: 391 ERANSMNGWGLAFRACGDRLIVIGG 415
R ++ L R+ V+GG
Sbjct: 251 HRRSA-----LGITVHQGRIYVLGG 270
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 29/158 (18%)
Query: 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIG 304
+ +G + AGG + LS E YN TW L ++ PR +G + G Y +G
Sbjct: 20 APKVGRLIYTAGGYFRQS--LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVG 77
Query: 305 GI-----GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV 359
G G +DS L C Y+ T W+ MS R V V+
Sbjct: 78 GRNNSPDGNTDSSALDC---YNPMTNQWSPCAPMSVPRNRIG--------------VGVI 120
Query: 360 NNELYAADYA-----DMEVRKYDKERRLWFTIGRLPER 392
+ +YA + V +Y+ ER W + + R
Sbjct: 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR 158
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 228 NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
N W MN R G L AGG D + + L+S E Y+ ET+TW + MK+
Sbjct: 195 NEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPMKHR 253
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAA 341
R G+ YV+GG G L E YD +T+TW+E+ M+ R G
Sbjct: 254 RSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVG 305
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 97/265 (36%), Gaps = 36/265 (13%)
Query: 160 YFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFG---RELTAHHI 216
YF L EA++P W+ L + S VG L G +
Sbjct: 34 YFRQSLSYLEAYNPSDGTWLRLADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNTD 89
Query: 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNI-LSSAEMYNSET 275
S + Y+ +TN WS M+ PR G + GGS G I +S E Y E
Sbjct: 90 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS--HGCIHHNSVERYEPER 147
Query: 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335
W ++ M R ++ Y +GG G++ L E Y E W I M+
Sbjct: 148 DEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPERNEWRMITAMNT 205
Query: 336 ARGGAARGTEMPASAEAPPLVAVVNNELYAADYADME-----VRKYDKERRLWFTIGRLP 390
R GA V V++N +YAA D + V +YD E W + +
Sbjct: 206 IRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK 251
Query: 391 ERANSMNGWGLAFRACGDRLIVIGG 415
R ++ L R+ V+GG
Sbjct: 252 HRRSA-----LGITVHQGRIYVLGG 271
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 62/165 (37%), Gaps = 29/165 (17%)
Query: 238 APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297
PR + +G + AGG + LS E YN TW L ++ PR +G +
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGYFRQS--LSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG 71
Query: 298 GKFYVIGGI-----GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352
G Y +GG G +DS L C Y+ T W+ MS R
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDC---YNPMTNQWSPCAPMSVPRNRIG----------- 117
Query: 353 PPLVAVVNNELYAADYA-----DMEVRKYDKERRLWFTIGRLPER 392
V V++ +YA + V +Y+ ER W + + R
Sbjct: 118 ---VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR 159
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 77/220 (35%), Gaps = 25/220 (11%)
Query: 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN 228
E +D RW + + S C + + L+ + Y + +
Sbjct: 33 ECYDFKEERWHQVAELPSRRC-----RAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKD 87
Query: 229 SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 288
W+S M R G+A L + GG D LSS E YN ++ W + M R
Sbjct: 88 QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNTRR 146
Query: 289 KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 348
+ G Y +GG + + L+ E Y+ T WT I MS R GA
Sbjct: 147 SSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAG------- 199
Query: 349 SAEAPPLVAVVNNELYAADYAD-----MEVRKYDKERRLW 383
V V+NN LYA D V YD W
Sbjct: 200 -------VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 11/191 (5%)
Query: 151 LNGVIEHWVYF--SCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFG 208
LNG++ F S L EA++ W H+ M + S + G V G
Sbjct: 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS---SVGVGVVGGLLYAVGG 163
Query: 209 RELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SS 267
++ + + Y+ TN W+ M+ R G L + GG D G ++ S
Sbjct: 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD--GPLVRKS 221
Query: 268 AEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327
E+Y+ T W+ + M R+ ++G YV+GG GS + L E Y+ T+ W
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN--LASVEYYNPTTDKW 279
Query: 328 TEIPN-MSPAR 337
T + + MS R
Sbjct: 280 TVVSSCMSTGR 290
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 247 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGI 306
+L ++ ++ GG + + S E Y+ + + W + + + R V+M G + +GG
Sbjct: 13 NLPKLMVVVGGQAPKA--IRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGF 70
Query: 307 GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAA 366
GS +V T + YD + WT + NM R AV+N LYA
Sbjct: 71 NGS-LRVRTV-DSYDPVKDQWTSVANMRDRRSTLG--------------AAVLNGLLYAV 114
Query: 367 DYAD-----MEVRKYDKERRLWFTIGRLPERANS 395
D V Y+ + WF + + R +S
Sbjct: 115 GGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS 148
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP 282
Y TN+W MN R G ++ + + GG D N L+S E YN T W V+
Sbjct: 225 YDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPTTDKWTVVS 283
Query: 283 SMKNPRKMCSGVFMDGK 299
S + + +GV + K
Sbjct: 284 SCMSTGRSYAGVTVIDK 300
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
Query: 228 NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
N W N R G L AGG D + + L+S E Y+ ET+TW + K+
Sbjct: 194 NEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQ-DQLNSVERYDVETETWTFVAPXKHR 252
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAA 341
R G+ YV+GG G L E YD +T+TW+E+ + R G
Sbjct: 253 RSALGITVHQGRIYVLGGYDG--HTFLDSVECYDPDTDTWSEVTRXTSGRSGVG 304
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Query: 206 VFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL 265
V G HH S + RY + W R G A L + GG D N L
Sbjct: 127 VGGSHGCIHHNS--VERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGT-NRL 183
Query: 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE 325
+SAE Y E W+ + + R + Y GG G D L E YD+ETE
Sbjct: 184 NSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETE 241
Query: 326 TWTEI 330
TWT +
Sbjct: 242 TWTFV 246
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 92/265 (34%), Gaps = 36/265 (13%)
Query: 160 YFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFG---RELTAHHI 216
YF L EA++P W+ L + S VG L G +
Sbjct: 33 YFRQSLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNTD 88
Query: 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNI-LSSAEMYNSET 275
S + Y+ TN WS + PR G + GGS G I +S E Y E
Sbjct: 89 SSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGS--HGCIHHNSVERYEPER 146
Query: 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335
W ++ R ++ Y +GG G++ L E Y E W I +
Sbjct: 147 DEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNR--LNSAECYYPERNEWRXITAXNT 204
Query: 336 ARGGAARGTEMPASAEAPPLVAVVNNELYAADYADME-----VRKYDKERRLWFTIGRLP 390
R GA V V++N +YAA D + V +YD E W +
Sbjct: 205 IRSGAG--------------VCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXK 250
Query: 391 ERANSMNGWGLAFRACGDRLIVIGG 415
R ++ L R+ V+GG
Sbjct: 251 HRRSA-----LGITVHQGRIYVLGG 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 57/152 (37%), Gaps = 29/152 (19%)
Query: 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIG 304
+ +G + AGG + LS E YN TW L ++ PR +G + G Y +G
Sbjct: 20 APKVGRLIYTAGGYFRQS--LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVG 77
Query: 305 GI-----GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV 359
G G +DS L C Y+ T W+ S R V V+
Sbjct: 78 GRNNSPDGNTDSSALDC---YNPXTNQWSPCAPXSVPRNRIG--------------VGVI 120
Query: 360 NNELYAADYA-----DMEVRKYDKERRLWFTI 386
+ +YA + V +Y+ ER W +
Sbjct: 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV 152
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 171 FDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSW 230
D + W+ LP + S C + + +V G++L + Y + W
Sbjct: 83 LDNVSSEWVGLPPLPSARCLFGLGEVDDKI---YVVAGKDLQTEASLDSVLCYDPVAAKW 139
Query: 231 SSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
S N P ++G + G I L G +D + + +YN + WK L MK P
Sbjct: 140 SE--VKNLPIKVYGHNVISHNGMIYCLGGKTD-DKKCTNRVFIYNPKKGDWKDLAPMKTP 196
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMP 347
R M GK + GG+ ++ + E +DL+T W E+ P + +
Sbjct: 197 RSMFGVAIHKGKIVIAGGV--TEDGLSASVEAFDLKTNKW-EVMTEFPQERSSISLVSLA 253
Query: 348 ASAEAPPLVAVVNNELYAADYADMEVR---KYDKERRLW 383
S A A++ +L + ++A EV KY+ +++ W
Sbjct: 254 GSLYAIGGFAMI--QLESKEFAPTEVNDIWKYEDDKKEW 290
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIG 307
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 237 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-S 289
Query: 308 GSDSKVLTCGEEYDLETETWTEIPN 332
GS GE Y ++TWT +PN
Sbjct: 290 GSGGVFEKNGEVYSPSSKTWTSLPN 314
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILA-GGSDLEGNILSSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + GGS G + E+Y+ ++TW L
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTWTSL 312
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 313 PNAKVNP 319
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 227 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 271
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 10/160 (6%)
Query: 171 FDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELT-AHHISHVIYRYSILTNS 229
FD + W+ +P + S C + A+ + +V GRE+ + Y L+
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGE---ALNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128
Query: 230 WSSGMRMNAPRCLFGSASLG--EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287
W G P ++G L ++ + GG + L+ +Y+ + WK L M+
Sbjct: 129 W--GESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA 186
Query: 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327
R + DG+ V G+ +D+ + + E Y + W
Sbjct: 187 RSLFGATVHDGRIIVAAGV--TDTGLTSSAEVYSITDNKW 224
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 230 WSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 288
W M R LFG+ G I + AG +D + SSAE+Y+ W + R
Sbjct: 177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDT--GLTSSAEVYSITDNKWAPFEAFPQER 234
Query: 289 KMCSGVFMDGKFYVIGGIGGSDSK 312
S V + G Y IGG +++
Sbjct: 235 SSLSLVSLVGTLYAIGGFATLETE 258
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFG-SASLGEIAILAGGSDLEGN-ILSSAEMYNS 273
+S ++ L + W + +PRCLFG +L I ++ G +G L S Y+
Sbjct: 65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR 124
Query: 274 ETQTW---KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI 330
+ W LP + + S MD YVIGG GSD K L YD + W E+
Sbjct: 125 LSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGG-KGSDRKCLNKMCVYDPKKFEWKEL 180
Query: 331 PNMSPAR 337
M AR
Sbjct: 181 APMQTAR 187
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 237 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSH 290
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 291 SGGVFEK---NGEVYSPSSKTWTSLPN 314
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILA-GGSDLEGNILSSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + GGS G + E+Y+ ++TW L
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSL 312
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 313 PNAKVNP 319
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 227 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 271
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 237 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 290
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 291 SGGVFEK---NGEVYSPSSKTWTSLPN 314
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + G G + + E+Y+ ++TW L
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 312
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 313 PNAKVNP 319
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 227 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 271
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 237 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSF 290
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 291 SGGVFEK---NGEVYSPSSKTWTSLPN 314
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + G G + + E+Y+ ++TW L
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSL 312
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 313 PNAKVNP 319
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 227 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 271
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 237 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 290
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 291 SGGVFEK---NGEVYSPSSKTWTSLPN 314
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + G G + + E+Y+ ++TW L
Sbjct: 253 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 312
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 313 PNAKVNP 319
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 227 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 271
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 254 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 307
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 308 SGGVFEK---NGEVYSPSSKTWTSLPN 331
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + G G + + E+Y+ ++TW L
Sbjct: 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL 329
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 330 PNAKVNP 336
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGI- 306
G+I ++ GG+D + +Y+S + +W P M+ R S M DG+ + IGG
Sbjct: 259 GQI-VVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSF 312
Query: 307 -GGSDSKVLTCGEEYDLETETWTEIPN 332
GG K GE Y ++TWT +PN
Sbjct: 313 SGGVFEK---NGEVYSPSSKTWTSLPN 336
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 223 YSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNIL-SSAEMYNSETQTWKVL 281
Y ++SW G M R SA++ + + G G + + E+Y+ ++TW L
Sbjct: 275 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTWTSL 334
Query: 282 PSMK-NP 287
P+ K NP
Sbjct: 335 PNAKVNP 341
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338
C G+ MDG ++ GG+D+K + YD +++W P+M ARG
Sbjct: 249 FCPGISMDGNGQIVV-TGGNDAKKTSL---YDSSSDSWIPGPDMQVARG 293
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 273 SETQTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGGSD---SKVLTCGEEYDLETETWT 328
++ + W L + PR + F+DG YV GGIG + ++V +Y+ +T +W
Sbjct: 40 AKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV 99
Query: 329 EIPNMSP 335
++ + +P
Sbjct: 100 KLXSHAP 106
>pdb|2W1Q|A Chain A, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1Q|B Chain B, Unique Ligand Binding Specificity For A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1U|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2W1U|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,3)galnac
pdb|2WDB|A Chain A, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|B Chain B, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|C Chain C, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
pdb|2WDB|D Chain D, A Family 32 Carbohydrate-Binding Module, From The Mu Toxin
Produced By Clostridium Perfringens, In Complex With
Beta- D-Glcnac-Beta(1,2)mannose
Length = 192
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 294 VFMDGKFYVIG-GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352
+ +DG +VIG GGS K EY L+ E+WT I + GA G ++ +
Sbjct: 76 IKLDGIRFVIGKNGGGSSDKWNKFKLEYSLDNESWTTIKEYD--KTGAPAGKDVIEESFE 133
Query: 353 PPLVA 357
P+ A
Sbjct: 134 TPISA 138
>pdb|2W1S|A Chain A, Unique Ligand Binding Specificity Of A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
pdb|2W1S|B Chain B, Unique Ligand Binding Specificity Of A Family 32
Carbohydrate-Binding Module From The Mu Toxin Produced
By Clostridium Perfringens
Length = 192
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 294 VFMDGKFYVIG-GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352
+ +DG +VIG GGS K EY L+ E+WT I + GA G ++ +
Sbjct: 76 IKLDGIRFVIGKNGGGSSDKWNKFKLEYSLDNESWTTIKEYD--KTGAPAGKDVIEESFE 133
Query: 353 PPLVA 357
P+ A
Sbjct: 134 TPISA 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,601,948
Number of Sequences: 62578
Number of extensions: 612119
Number of successful extensions: 1717
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1600
Number of HSP's gapped (non-prelim): 72
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)