Query 012701
Match_columns 458
No_of_seqs 355 out of 2822
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:24:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1E-42 2.2E-47 363.5 31.1 281 141-456 283-568 (571)
2 PHA02713 hypothetical protein; 100.0 2.2E-40 4.8E-45 347.1 29.3 253 167-449 273-548 (557)
3 PLN02153 epithiospecifier prot 100.0 4.7E-36 1E-40 298.1 31.3 269 139-431 29-338 (341)
4 PLN02153 epithiospecifier prot 100.0 1.3E-35 2.8E-40 295.0 31.6 257 173-455 4-310 (341)
5 KOG4441 Proteins containing BT 100.0 3.7E-36 8.1E-41 314.1 26.3 235 199-457 282-522 (571)
6 PHA03098 kelch-like protein; P 100.0 2.8E-35 6.1E-40 309.9 30.6 258 167-453 265-530 (534)
7 TIGR03547 muta_rot_YjhT mutatr 100.0 7.2E-35 1.6E-39 290.4 29.3 260 140-428 15-342 (346)
8 PLN02193 nitrile-specifier pro 100.0 4.6E-34 9.9E-39 294.6 35.1 256 169-452 140-434 (470)
9 TIGR03548 mutarot_permut cycli 100.0 1.4E-34 3.1E-39 285.4 28.7 260 139-425 10-321 (323)
10 PHA02713 hypothetical protein; 100.0 1.1E-34 2.3E-39 304.2 29.0 217 218-457 272-512 (557)
11 TIGR03547 muta_rot_YjhT mutatr 100.0 3.4E-34 7.4E-39 285.6 30.4 252 181-457 1-321 (346)
12 PLN02193 nitrile-specifier pro 100.0 1.9E-33 4.1E-38 290.0 32.2 269 139-432 172-468 (470)
13 PHA02790 Kelch-like protein; P 100.0 2.1E-33 4.6E-38 290.4 29.6 211 198-442 268-478 (480)
14 PRK14131 N-acetylneuraminic ac 100.0 5.3E-33 1.1E-37 279.5 29.9 267 139-433 35-369 (376)
15 PHA03098 kelch-like protein; P 100.0 5.2E-33 1.1E-37 292.8 26.3 232 136-393 288-525 (534)
16 TIGR03548 mutarot_permut cycli 100.0 4E-32 8.6E-37 268.0 29.9 245 194-457 6-303 (323)
17 PRK14131 N-acetylneuraminic ac 100.0 3.6E-32 7.8E-37 273.5 29.8 256 177-457 18-343 (376)
18 PHA02790 Kelch-like protein; P 100.0 1.6E-32 3.5E-37 283.7 26.4 203 141-386 270-477 (480)
19 KOG4693 Uncharacterized conser 100.0 2.6E-31 5.7E-36 239.0 20.1 259 138-418 19-313 (392)
20 KOG4693 Uncharacterized conser 100.0 7.5E-30 1.6E-34 229.6 20.1 243 194-457 16-302 (392)
21 KOG0379 Kelch repeat-containin 99.9 9.7E-25 2.1E-29 224.9 26.8 247 183-455 56-326 (482)
22 KOG0379 Kelch repeat-containin 99.9 8.5E-24 1.8E-28 217.9 26.1 275 142-443 70-370 (482)
23 KOG1230 Protein containing rep 99.9 9.1E-23 2E-27 194.0 20.0 224 201-441 78-347 (521)
24 KOG4152 Host cell transcriptio 99.9 8.4E-23 1.8E-27 198.4 18.3 249 136-419 36-344 (830)
25 KOG4152 Host cell transcriptio 99.9 1.9E-22 4.1E-27 196.0 17.8 255 176-457 17-332 (830)
26 KOG1230 Protein containing rep 99.9 1.2E-21 2.5E-26 186.5 19.4 221 143-386 79-347 (521)
27 COG3055 Uncharacterized protei 99.8 4.9E-17 1.1E-21 153.4 22.7 249 165-431 57-373 (381)
28 COG3055 Uncharacterized protei 99.6 1.2E-14 2.5E-19 137.4 15.5 193 231-446 28-267 (381)
29 PF13964 Kelch_6: Kelch motif 99.2 2.8E-11 6.1E-16 84.7 6.5 50 239-288 1-50 (50)
30 PF13964 Kelch_6: Kelch motif 99.1 1.6E-10 3.5E-15 80.8 6.5 50 287-337 1-50 (50)
31 KOG2437 Muskelin [Signal trans 99.0 2.1E-10 4.6E-15 112.6 4.1 177 226-417 237-457 (723)
32 PF01344 Kelch_1: Kelch motif; 99.0 4.1E-10 9E-15 77.6 4.3 47 239-285 1-47 (47)
33 PF01344 Kelch_1: Kelch motif; 98.9 2.7E-09 5.8E-14 73.5 4.8 47 287-334 1-47 (47)
34 KOG2437 Muskelin [Signal trans 98.8 2.7E-09 5.8E-14 105.0 5.2 158 173-331 236-420 (723)
35 PF13415 Kelch_3: Galactose ox 98.8 8.3E-09 1.8E-13 71.7 6.1 48 201-248 1-49 (49)
36 TIGR01640 F_box_assoc_1 F-box 98.8 2.1E-06 4.6E-11 80.4 23.3 198 218-433 14-229 (230)
37 PF13415 Kelch_3: Galactose ox 98.8 1.2E-08 2.6E-13 70.9 6.0 48 249-296 1-49 (49)
38 PF13418 Kelch_4: Galactose ox 98.8 6.7E-09 1.4E-13 72.2 4.0 48 239-286 1-49 (49)
39 PF07646 Kelch_2: Kelch motif; 98.8 2.1E-08 4.5E-13 69.7 6.4 48 287-334 1-49 (49)
40 PF07646 Kelch_2: Kelch motif; 98.8 2.1E-08 4.5E-13 69.6 6.3 47 239-285 1-49 (49)
41 PF13418 Kelch_4: Galactose ox 98.7 3.2E-08 7E-13 68.7 4.8 48 287-335 1-49 (49)
42 PLN03215 ascorbic acid mannose 98.7 4.7E-06 1E-10 82.1 21.5 38 105-142 3-41 (373)
43 smart00612 Kelch Kelch domain. 98.6 5E-08 1.1E-12 66.8 5.2 47 251-298 1-47 (47)
44 TIGR01640 F_box_assoc_1 F-box 98.6 1.3E-05 2.8E-10 75.1 23.2 202 166-381 14-230 (230)
45 smart00612 Kelch Kelch domain. 98.6 1E-07 2.2E-12 65.2 4.8 47 203-250 1-47 (47)
46 PF07250 Glyoxal_oxid_N: Glyox 98.5 4E-06 8.6E-11 78.2 14.3 155 220-392 48-211 (243)
47 PLN02772 guanylate kinase 98.4 3E-06 6.5E-11 83.8 11.0 83 238-324 23-109 (398)
48 PF07250 Glyoxal_oxid_N: Glyox 98.3 1.1E-05 2.3E-10 75.3 12.9 147 169-336 49-211 (243)
49 PF12937 F-box-like: F-box-lik 98.3 2.8E-07 6.1E-12 63.3 1.3 41 106-146 1-41 (47)
50 PF13854 Kelch_5: Kelch motif 98.3 2.5E-06 5.4E-11 57.0 5.7 41 284-324 1-41 (42)
51 PLN02772 guanylate kinase 98.3 6.2E-06 1.3E-10 81.7 10.6 80 194-276 27-110 (398)
52 PF13854 Kelch_5: Kelch motif 98.2 3.7E-06 8E-11 56.2 5.4 41 236-276 1-42 (42)
53 PRK11138 outer membrane biogen 98.0 0.01 2.3E-07 60.2 28.1 227 165-440 78-320 (394)
54 PRK11138 outer membrane biogen 97.9 0.013 2.9E-07 59.4 28.0 220 158-440 122-361 (394)
55 smart00256 FBOX A Receptor for 97.9 3.8E-06 8.2E-11 55.6 1.0 39 109-147 1-39 (41)
56 PF13360 PQQ_2: PQQ-like domai 97.9 0.013 2.8E-07 54.5 25.4 220 167-440 4-238 (238)
57 TIGR03300 assembly_YfgL outer 97.8 0.036 7.8E-07 55.8 28.3 226 159-440 68-305 (377)
58 PF13360 PQQ_2: PQQ-like domai 97.8 0.009 1.9E-07 55.6 22.4 179 158-384 38-237 (238)
59 KOG0281 Beta-TrCP (transducin 97.8 0.00025 5.3E-09 67.6 11.0 43 104-146 73-119 (499)
60 PF00646 F-box: F-box domain; 97.7 3.4E-06 7.4E-11 58.1 -1.7 40 106-145 3-42 (48)
61 TIGR03300 assembly_YfgL outer 97.7 0.03 6.6E-07 56.3 26.3 205 158-415 147-369 (377)
62 PF03089 RAG2: Recombination a 97.6 0.0029 6.2E-08 59.2 15.4 106 203-308 39-175 (337)
63 PF07893 DUF1668: Protein of u 97.5 0.0032 7E-08 62.5 15.9 122 197-332 71-216 (342)
64 PF07893 DUF1668: Protein of u 97.5 0.0064 1.4E-07 60.4 16.8 130 248-391 75-221 (342)
65 PF08450 SGL: SMP-30/Gluconola 97.2 0.034 7.3E-07 52.4 18.0 191 163-392 19-225 (246)
66 PF03089 RAG2: Recombination a 97.2 0.025 5.4E-07 53.1 15.8 154 251-422 39-234 (337)
67 PF08450 SGL: SMP-30/Gluconola 96.9 0.062 1.4E-06 50.6 17.1 205 201-455 11-232 (246)
68 PF05096 Glu_cyclase_2: Glutam 96.8 0.035 7.6E-07 52.3 13.8 178 200-414 54-249 (264)
69 PF12768 Rax2: Cortical protei 96.6 0.092 2E-06 50.4 15.4 121 252-388 1-130 (281)
70 cd00216 PQQ_DH Dehydrogenases 96.3 1.7 3.7E-05 45.5 27.5 209 160-385 65-327 (488)
71 PF09910 DUF2139: Uncharacteri 96.3 1.1 2.3E-05 42.8 20.8 169 195-381 40-232 (339)
72 KOG0274 Cdc4 and related F-box 96.3 0.34 7.5E-06 51.0 18.7 284 101-433 103-401 (537)
73 TIGR02800 propeller_TolB tol-p 96.3 1.6 3.4E-05 44.4 23.5 146 218-388 214-363 (417)
74 KOG2120 SCF ubiquitin ligase, 96.0 0.0037 8E-08 59.2 2.3 45 105-149 97-141 (419)
75 KOG2055 WD40 repeat protein [G 95.9 0.21 4.5E-06 49.9 13.9 182 201-432 224-417 (514)
76 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 1.6 3.6E-05 41.3 25.0 144 201-383 42-191 (300)
77 PRK11028 6-phosphogluconolacto 95.9 2 4.3E-05 42.2 25.4 232 166-442 12-268 (330)
78 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 1.8 4E-05 41.0 20.5 139 203-382 2-148 (300)
79 KOG2055 WD40 repeat protein [G 95.6 0.38 8.3E-06 48.1 14.3 146 201-380 268-418 (514)
80 PRK11028 6-phosphogluconolacto 95.6 2.5 5.5E-05 41.5 26.7 217 201-455 91-327 (330)
81 PF12768 Rax2: Cortical protei 95.6 0.23 5.1E-06 47.7 12.5 110 216-332 14-130 (281)
82 KOG1036 Mitotic spindle checkp 95.5 1.6 3.4E-05 41.7 17.3 141 202-382 26-166 (323)
83 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.4 4.3 9.4E-05 42.9 24.5 208 158-382 71-336 (527)
84 cd00200 WD40 WD40 domain, foun 95.2 2.5 5.5E-05 38.8 21.6 134 217-382 72-210 (289)
85 PF05096 Glu_cyclase_2: Glutam 95.2 0.36 7.9E-06 45.6 12.1 96 296-417 54-149 (264)
86 PF10282 Lactonase: Lactonase, 95.1 1.1 2.4E-05 44.5 16.5 200 220-441 17-231 (345)
87 PRK00178 tolB translocation pr 95.1 4.2 9.1E-05 41.6 21.0 146 218-388 223-372 (430)
88 PRK04792 tolB translocation pr 94.9 5.5 0.00012 41.2 24.7 145 218-387 242-390 (448)
89 KOG0310 Conserved WD40 repeat- 94.9 1.3 2.8E-05 44.7 15.5 249 106-418 35-301 (487)
90 cd00094 HX Hemopexin-like repe 94.8 2.7 6E-05 38.0 16.6 151 197-382 12-178 (194)
91 PF08268 FBA_3: F-box associat 94.7 0.63 1.4E-05 39.1 11.5 81 294-391 2-93 (129)
92 PF14870 PSII_BNR: Photosynthe 94.7 3.3 7.2E-05 40.3 17.8 216 176-443 47-270 (302)
93 COG4257 Vgb Streptogramin lyas 94.6 3.6 7.8E-05 39.0 16.6 182 166-387 124-313 (353)
94 KOG0316 Conserved WD40 repeat- 94.5 2.3 5E-05 39.2 14.9 137 216-382 37-176 (307)
95 PLN00181 protein SPA1-RELATED; 94.2 4.9 0.00011 44.8 20.4 131 217-381 554-692 (793)
96 PF10282 Lactonase: Lactonase, 94.2 6.4 0.00014 39.1 23.6 235 168-443 17-286 (345)
97 KOG0299 U3 snoRNP-associated p 94.1 6.1 0.00013 39.8 18.1 205 200-454 212-432 (479)
98 PF03178 CPSF_A: CPSF A subuni 94.1 1.4 3E-05 43.3 14.1 121 266-415 62-190 (321)
99 PLN02919 haloacid dehalogenase 94.1 4.1 8.9E-05 46.8 19.5 161 201-382 694-891 (1057)
100 cd00216 PQQ_DH Dehydrogenases 94.0 8.6 0.00019 40.2 20.6 116 244-385 56-191 (488)
101 KOG2997 F-box protein FBX9 [Ge 93.9 0.016 3.4E-07 55.2 -0.1 44 106-149 107-155 (366)
102 PF03178 CPSF_A: CPSF A subuni 93.8 0.72 1.6E-05 45.3 11.5 131 218-376 62-199 (321)
103 PRK13684 Ycf48-like protein; P 93.7 7.9 0.00017 38.3 22.2 192 200-443 98-297 (334)
104 PRK13684 Ycf48-like protein; P 93.7 8 0.00017 38.3 19.7 164 219-415 153-321 (334)
105 PRK05137 tolB translocation pr 93.6 9.8 0.00021 39.1 24.3 146 218-387 226-374 (435)
106 cd00200 WD40 WD40 domain, foun 93.5 6 0.00013 36.2 22.0 143 202-381 105-251 (289)
107 COG4946 Uncharacterized protei 93.4 8 0.00017 39.3 17.5 147 164-332 285-440 (668)
108 PRK04922 tolB translocation pr 93.3 11 0.00024 38.7 22.5 147 217-388 227-377 (433)
109 cd00094 HX Hemopexin-like repe 93.1 6.1 0.00013 35.7 15.6 49 360-416 110-167 (194)
110 COG3823 Glutamine cyclotransfe 93.1 6.6 0.00014 35.7 15.4 185 196-415 50-248 (262)
111 KOG0291 WD40-repeat-containing 92.7 17 0.00036 39.2 19.6 143 243-419 310-458 (893)
112 PF02191 OLF: Olfactomedin-lik 92.4 9.6 0.00021 36.0 16.2 180 201-414 30-237 (250)
113 TIGR03075 PQQ_enz_alc_DH PQQ-d 92.3 17 0.00038 38.4 20.4 114 244-385 64-197 (527)
114 PRK04043 tolB translocation pr 92.2 15 0.00033 37.6 18.9 143 218-388 213-366 (419)
115 PF02191 OLF: Olfactomedin-lik 91.9 11 0.00025 35.5 18.0 156 195-379 72-247 (250)
116 smart00284 OLF Olfactomedin-li 91.9 11 0.00025 35.5 17.7 182 201-414 34-242 (255)
117 TIGR02658 TTQ_MADH_Hv methylam 91.8 15 0.00032 36.6 26.4 114 156-280 12-142 (352)
118 PLN02919 haloacid dehalogenase 91.8 30 0.00064 40.0 30.7 165 201-387 635-841 (1057)
119 KOG1332 Vesicle coat complex C 91.5 7.8 0.00017 36.1 13.7 55 377-444 241-297 (299)
120 COG1520 FOG: WD40-like repeat 91.5 16 0.00036 36.5 20.3 150 198-385 65-225 (370)
121 TIGR03074 PQQ_membr_DH membran 91.2 28 0.0006 38.6 25.4 166 156-329 194-430 (764)
122 KOG0310 Conserved WD40 repeat- 91.2 19 0.00041 36.6 19.0 107 199-326 77-187 (487)
123 COG3386 Gluconolactonase [Carb 90.7 17 0.00038 35.4 21.5 219 160-417 41-277 (307)
124 PTZ00421 coronin; Provisional 90.5 25 0.00054 36.9 20.2 105 201-326 87-201 (493)
125 TIGR02800 propeller_TolB tol-p 90.3 22 0.00048 35.9 20.9 101 266-387 214-318 (417)
126 KOG0291 WD40-repeat-containing 90.2 23 0.00049 38.2 17.4 58 166-233 414-473 (893)
127 PRK05137 tolB translocation pr 90.1 24 0.00053 36.1 22.4 145 217-387 181-330 (435)
128 KOG0289 mRNA splicing factor [ 89.6 9.6 0.00021 38.3 13.4 121 288-445 348-473 (506)
129 PRK02889 tolB translocation pr 89.4 27 0.00059 35.7 22.5 145 218-387 220-368 (427)
130 smart00284 OLF Olfactomedin-li 89.4 19 0.00042 34.0 16.4 157 194-379 76-252 (255)
131 KOG2321 WD40 repeat protein [G 89.1 13 0.00028 38.8 14.2 105 202-327 146-262 (703)
132 KOG0316 Conserved WD40 repeat- 89.1 19 0.00041 33.4 18.2 173 217-433 80-258 (307)
133 PRK04792 tolB translocation pr 88.9 31 0.00067 35.6 23.0 149 166-332 242-391 (448)
134 PLN00033 photosystem II stabil 88.8 29 0.00063 35.2 20.1 49 360-415 338-389 (398)
135 KOG0266 WD40 repeat-containing 88.4 30 0.00065 35.8 17.3 136 216-382 223-367 (456)
136 PF08268 FBA_3: F-box associat 88.3 8.6 0.00019 32.1 11.0 82 357-443 2-89 (129)
137 PLN03215 ascorbic acid mannose 88.2 9.6 0.00021 38.1 12.7 105 324-446 189-306 (373)
138 PRK04922 tolB translocation pr 88.1 34 0.00073 35.1 22.5 101 266-387 228-332 (433)
139 PRK00178 tolB translocation pr 88.0 33 0.00072 35.0 22.7 101 266-387 223-327 (430)
140 PF14870 PSII_BNR: Photosynthe 87.9 28 0.0006 33.9 19.1 172 201-414 27-204 (302)
141 PF06433 Me-amine-dh_H: Methyl 87.9 9 0.0002 37.7 12.0 103 167-280 18-132 (342)
142 PLN00181 protein SPA1-RELATED; 87.7 52 0.0011 36.8 20.6 144 201-381 587-740 (793)
143 KOG1332 Vesicle coat complex C 87.7 24 0.00052 33.0 15.8 103 251-389 176-297 (299)
144 TIGR03074 PQQ_membr_DH membran 87.2 53 0.0012 36.4 21.2 36 243-285 188-225 (764)
145 KOG2321 WD40 repeat protein [G 87.2 6.6 0.00014 40.8 10.9 115 250-382 146-261 (703)
146 KOG0281 Beta-TrCP (transducin 86.8 16 0.00035 35.7 12.7 177 200-433 245-429 (499)
147 KOG0296 Angio-associated migra 86.6 35 0.00075 33.7 15.4 106 249-385 75-184 (399)
148 KOG0293 WD40 repeat-containing 86.0 22 0.00048 35.6 13.3 139 216-388 289-432 (519)
149 PF06433 Me-amine-dh_H: Methyl 85.7 14 0.00031 36.3 12.1 71 297-383 249-324 (342)
150 TIGR02658 TTQ_MADH_Hv methylam 85.2 43 0.00092 33.4 21.6 52 360-416 259-320 (352)
151 COG1520 FOG: WD40-like repeat 83.8 50 0.0011 33.0 24.1 189 167-387 79-278 (370)
152 PTZ00420 coronin; Provisional 83.6 66 0.0014 34.4 17.1 154 203-387 139-301 (568)
153 PRK03629 tolB translocation pr 83.6 56 0.0012 33.5 23.8 147 218-388 223-372 (429)
154 KOG0286 G-protein beta subunit 83.0 33 0.00071 32.9 12.6 117 283-419 94-210 (343)
155 PF12217 End_beta_propel: Cata 82.2 28 0.00061 32.8 11.7 207 197-418 80-335 (367)
156 PTZ00421 coronin; Provisional 82.2 70 0.0015 33.6 22.4 152 202-386 138-297 (493)
157 KOG4378 Nuclear protein COP1 [ 82.0 20 0.00043 36.7 11.5 64 295-381 218-282 (673)
158 PF07433 DUF1513: Protein of u 81.0 57 0.0012 31.7 23.3 225 167-415 29-275 (305)
159 PF02897 Peptidase_S9_N: Proly 80.7 41 0.0009 34.0 14.1 144 217-387 251-412 (414)
160 KOG0650 WD40 repeat nucleolar 78.9 61 0.0013 34.2 13.9 138 249-416 533-680 (733)
161 KOG1036 Mitotic spindle checkp 78.4 66 0.0014 31.0 16.2 93 216-326 73-166 (323)
162 KOG0315 G-protein beta subunit 77.0 66 0.0014 30.2 16.9 190 201-432 51-245 (311)
163 PRK03629 tolB translocation pr 75.9 98 0.0021 31.7 21.8 101 266-387 223-327 (429)
164 KOG0286 G-protein beta subunit 75.7 78 0.0017 30.4 20.7 212 167-431 78-302 (343)
165 PRK01742 tolB translocation pr 75.5 1E+02 0.0022 31.6 20.5 139 218-387 228-369 (429)
166 KOG0282 mRNA splicing factor [ 75.2 32 0.00069 35.1 10.6 62 249-326 269-333 (503)
167 PF07734 FBA_1: F-box associat 75.1 55 0.0012 28.4 11.6 81 293-387 1-91 (164)
168 COG4946 Uncharacterized protei 75.0 1.1E+02 0.0023 31.6 16.5 98 266-387 206-303 (668)
169 PLN00033 photosystem II stabil 74.8 1E+02 0.0022 31.3 24.7 197 198-442 143-364 (398)
170 COG4257 Vgb Streptogramin lyas 74.6 82 0.0018 30.2 14.3 141 219-387 125-270 (353)
171 PF13088 BNR_2: BNR repeat-lik 74.4 78 0.0017 29.8 15.1 185 249-456 58-267 (275)
172 KOG3545 Olfactomedin and relat 73.9 79 0.0017 29.7 17.3 197 169-414 13-236 (249)
173 KOG0296 Angio-associated migra 73.9 97 0.0021 30.7 17.6 142 202-382 76-223 (399)
174 COG2706 3-carboxymuconate cycl 73.3 98 0.0021 30.5 24.7 157 265-443 166-332 (346)
175 PRK01742 tolB translocation pr 73.3 1.1E+02 0.0025 31.2 16.7 139 167-331 229-369 (429)
176 KOG0266 WD40 repeat-containing 73.1 1.2E+02 0.0026 31.4 17.5 108 249-384 214-323 (456)
177 KOG0772 Uncharacterized conser 72.8 1.2E+02 0.0027 31.4 18.4 133 286-445 315-454 (641)
178 KOG2048 WD40 repeat protein [G 72.0 1E+02 0.0022 33.0 13.6 155 199-386 391-558 (691)
179 PRK04043 tolB translocation pr 71.1 1.3E+02 0.0028 30.8 23.5 152 165-332 212-366 (419)
180 TIGR03032 conserved hypothetic 71.0 12 0.00027 36.3 6.4 54 355-416 207-260 (335)
181 PF12217 End_beta_propel: Cata 69.9 1E+02 0.0022 29.2 18.0 207 197-420 21-262 (367)
182 KOG0649 WD40 repeat protein [G 69.9 98 0.0021 29.0 12.4 86 276-385 99-192 (325)
183 KOG0279 G protein beta subunit 68.9 1.1E+02 0.0024 29.2 17.8 143 201-382 116-265 (315)
184 COG3823 Glutamine cyclotransfe 66.6 52 0.0011 30.1 9.0 99 292-417 50-150 (262)
185 KOG2048 WD40 repeat protein [G 66.2 1.9E+02 0.0042 31.0 23.3 91 355-457 209-301 (691)
186 PTZ00420 coronin; Provisional 66.0 1.9E+02 0.0041 30.9 18.9 23 360-382 178-200 (568)
187 KOG0285 Pleiotropic regulator 65.9 1.5E+02 0.0031 29.5 17.0 33 355-387 365-398 (460)
188 KOG0289 mRNA splicing factor [ 65.3 1.6E+02 0.0035 29.9 17.5 114 201-336 358-475 (506)
189 PF07734 FBA_1: F-box associat 65.2 92 0.002 27.0 11.2 82 246-332 2-92 (164)
190 KOG0278 Serine/threonine kinas 64.2 1.3E+02 0.0028 28.4 15.1 130 216-377 163-295 (334)
191 KOG0274 Cdc4 and related F-box 64.2 2E+02 0.0044 30.5 20.3 164 216-417 309-473 (537)
192 COG4880 Secreted protein conta 63.7 1.6E+02 0.0035 30.0 12.5 74 245-324 382-458 (603)
193 PF15525 DUF4652: Domain of un 62.8 1.2E+02 0.0025 27.3 11.3 74 214-289 84-163 (200)
194 PF13088 BNR_2: BNR repeat-lik 62.7 1.4E+02 0.003 28.1 13.9 193 201-412 58-275 (275)
195 KOG4499 Ca2+-binding protein R 62.5 97 0.0021 29.0 10.1 37 358-394 220-256 (310)
196 COG3391 Uncharacterized conser 62.4 1.8E+02 0.0038 29.3 17.7 145 200-383 84-243 (381)
197 PF15492 Nbas_N: Neuroblastoma 60.7 1.6E+02 0.0035 28.2 12.8 57 361-420 110-171 (282)
198 KOG0647 mRNA export protein (c 60.3 1.5E+02 0.0033 28.7 11.3 103 249-381 83-186 (347)
199 PRK10115 protease 2; Provision 59.9 2.7E+02 0.0059 30.6 17.9 151 216-388 245-403 (686)
200 KOG0305 Anaphase promoting com 57.6 2.4E+02 0.0053 29.4 15.4 165 218-417 197-365 (484)
201 KOG1523 Actin-related protein 56.2 1.5E+02 0.0034 28.8 10.6 99 216-328 30-137 (361)
202 KOG0315 G-protein beta subunit 56.0 1.8E+02 0.004 27.4 15.5 104 266-393 61-167 (311)
203 KOG0647 mRNA export protein (c 56.0 1.7E+02 0.0036 28.4 10.7 134 216-380 92-229 (347)
204 PF15525 DUF4652: Domain of un 55.6 1.6E+02 0.0034 26.5 10.5 80 257-336 79-161 (200)
205 KOG0263 Transcription initiati 55.3 88 0.0019 33.8 9.8 64 296-380 587-650 (707)
206 COG4447 Uncharacterized protei 55.0 2E+02 0.0044 27.6 11.2 151 194-383 47-204 (339)
207 KOG0649 WD40 repeat protein [G 53.1 2E+02 0.0044 27.1 15.2 112 201-334 126-246 (325)
208 PF02897 Peptidase_S9_N: Proly 52.2 2.6E+02 0.0057 28.1 17.8 141 217-379 201-357 (414)
209 PF08662 eIF2A: Eukaryotic tra 52.0 1.8E+02 0.0039 26.1 10.4 92 201-305 71-162 (194)
210 KOG0265 U5 snRNP-specific prot 50.3 2.5E+02 0.0054 27.3 11.7 94 249-382 58-166 (338)
211 KOG0282 mRNA splicing factor [ 50.0 1.6E+02 0.0035 30.2 10.2 52 217-277 279-333 (503)
212 KOG4341 F-box protein containi 49.0 12 0.00026 37.8 2.2 47 100-146 66-112 (483)
213 PRK02889 tolB translocation pr 48.4 3.1E+02 0.0068 27.9 22.7 146 217-387 175-324 (427)
214 PF03088 Str_synth: Strictosid 48.0 38 0.00082 26.4 4.5 37 371-413 37-74 (89)
215 COG4880 Secreted protein conta 48.0 3.1E+02 0.0067 28.1 11.6 30 356-389 571-600 (603)
216 PF02239 Cytochrom_D1: Cytochr 47.9 1.7E+02 0.0037 29.3 10.4 93 216-326 14-111 (369)
217 KOG0265 U5 snRNP-specific prot 47.6 2.4E+02 0.0053 27.3 10.4 58 201-278 58-124 (338)
218 PF13013 F-box-like_2: F-box-l 47.0 15 0.00032 29.9 2.1 29 106-134 22-50 (109)
219 COG3386 Gluconolactonase [Carb 46.2 2.9E+02 0.0063 26.9 21.1 137 216-380 45-194 (307)
220 KOG0308 Conserved WD40 repeat- 46.1 3.1E+02 0.0068 29.5 11.8 96 217-326 94-204 (735)
221 KOG0318 WD40 repeat stress pro 45.9 3.8E+02 0.0082 28.1 13.9 105 201-324 454-561 (603)
222 COG0823 TolB Periplasmic compo 45.1 3.6E+02 0.0078 27.7 13.8 145 218-387 218-367 (425)
223 KOG1274 WD40 repeat protein [G 44.3 5E+02 0.011 29.1 19.0 41 266-307 76-117 (933)
224 PF03022 MRJP: Major royal jel 44.2 3E+02 0.0065 26.5 21.3 205 201-415 11-254 (287)
225 KOG0645 WD40 repeat protein [G 43.6 3E+02 0.0065 26.3 18.3 110 202-330 27-143 (312)
226 COG0823 TolB Periplasmic compo 43.5 3.8E+02 0.0083 27.5 13.8 108 216-332 260-368 (425)
227 KOG0263 Transcription initiati 43.1 4.6E+02 0.01 28.6 12.8 106 198-324 542-650 (707)
228 KOG0646 WD40 repeat protein [G 42.3 4E+02 0.0087 27.4 14.0 58 196-261 86-146 (476)
229 KOG0639 Transducin-like enhanc 41.1 93 0.002 32.2 7.0 97 295-418 474-573 (705)
230 PF13570 PQQ_3: PQQ-like domai 40.2 52 0.0011 20.9 3.6 23 198-227 18-40 (40)
231 cd00260 Sialidase Sialidases o 40.0 3.7E+02 0.008 26.3 26.3 100 355-455 202-318 (351)
232 COG2706 3-carboxymuconate cycl 40.0 3.8E+02 0.0083 26.5 23.0 167 249-441 51-230 (346)
233 PF01436 NHL: NHL repeat; Int 38.9 70 0.0015 18.7 3.7 22 355-376 6-28 (28)
234 KOG1897 Damage-specific DNA bi 38.9 6.4E+02 0.014 28.8 19.8 169 216-414 748-930 (1096)
235 PF14781 BBS2_N: Ciliary BBSom 37.9 2.5E+02 0.0055 23.8 8.7 116 148-280 3-133 (136)
236 PF09826 Beta_propel: Beta pro 37.8 5.2E+02 0.011 27.4 12.5 103 216-324 246-356 (521)
237 KOG0640 mRNA cleavage stimulat 37.2 4.1E+02 0.0088 26.0 12.2 158 103-277 162-338 (430)
238 KOG0294 WD40 repeat-containing 37.2 4.1E+02 0.0089 26.0 11.1 117 272-415 25-147 (362)
239 COG3419 PilY1 Tfp pilus assemb 36.6 6.8E+02 0.015 28.7 13.2 27 150-176 576-602 (1036)
240 KOG0272 U4/U6 small nuclear ri 36.5 4E+02 0.0086 27.1 10.4 115 295-445 312-427 (459)
241 PF03022 MRJP: Major royal jel 36.3 2.4E+02 0.0051 27.2 9.0 82 166-253 34-124 (287)
242 KOG0308 Conserved WD40 repeat- 35.4 6E+02 0.013 27.4 13.6 67 199-277 127-204 (735)
243 KOG0278 Serine/threonine kinas 35.3 4E+02 0.0086 25.3 12.7 123 266-417 165-288 (334)
244 PF02239 Cytochrom_D1: Cytochr 35.2 3.1E+02 0.0067 27.5 10.0 150 156-326 48-205 (369)
245 PF14781 BBS2_N: Ciliary BBSom 34.2 1.4E+02 0.0031 25.2 6.1 69 361-442 64-135 (136)
246 KOG3545 Olfactomedin and relat 32.2 4.4E+02 0.0095 24.8 14.4 91 267-388 11-108 (249)
247 COG3391 Uncharacterized conser 31.8 5.4E+02 0.012 25.8 16.5 137 248-417 84-228 (381)
248 PRK10115 protease 2; Provision 31.5 7.4E+02 0.016 27.2 25.4 150 216-387 197-354 (686)
249 KOG1446 Histone H3 (Lys4) meth 31.0 5.1E+02 0.011 25.2 21.3 209 201-454 26-251 (311)
250 KOG0639 Transducin-like enhanc 30.5 1.8E+02 0.0039 30.2 7.1 106 199-325 474-583 (705)
251 KOG1517 Guanine nucleotide bin 30.1 1.6E+02 0.0034 33.6 7.1 82 278-379 1154-1239(1387)
252 PF14583 Pectate_lyase22: Olig 29.8 5.9E+02 0.013 25.8 10.6 259 142-443 47-337 (386)
253 KOG0285 Pleiotropic regulator 28.9 6E+02 0.013 25.4 17.1 180 198-432 200-389 (460)
254 KOG0318 WD40 repeat stress pro 28.2 7.2E+02 0.016 26.1 22.2 137 202-382 375-520 (603)
255 COG4447 Uncharacterized protei 27.8 5.6E+02 0.012 24.7 12.1 206 171-414 110-321 (339)
256 KOG4328 WD40 protein [Function 27.5 4E+02 0.0086 27.4 8.9 23 249-277 431-453 (498)
257 KOG0640 mRNA cleavage stimulat 27.3 4E+02 0.0086 26.1 8.4 97 265-383 237-339 (430)
258 PF11134 Phage_stabilise: Phag 26.7 7.2E+02 0.016 25.6 16.4 17 219-235 110-126 (469)
259 KOG2502 Tub family proteins [G 26.6 73 0.0016 31.3 3.6 39 104-142 43-89 (355)
260 PF09826 Beta_propel: Beta pro 25.8 8.1E+02 0.018 25.9 18.8 227 197-457 59-335 (521)
261 KOG1539 WD repeat protein [Gen 25.7 9.7E+02 0.021 26.8 23.4 69 363-441 216-284 (910)
262 KOG2111 Uncharacterized conser 25.5 6.5E+02 0.014 24.7 16.6 147 201-382 58-215 (346)
263 KOG0322 G-protein beta subunit 25.1 6.2E+02 0.013 24.3 10.2 25 199-228 161-185 (323)
264 KOG1275 PAB-dependent poly(A) 24.3 2.1E+02 0.0046 32.1 6.7 125 286-443 135-261 (1118)
265 KOG1273 WD40 repeat protein [G 23.3 7.2E+02 0.016 24.4 12.0 62 201-277 34-98 (405)
266 KOG0643 Translation initiation 23.0 6.8E+02 0.015 24.0 18.2 174 216-419 72-255 (327)
267 TIGR03118 PEPCTERM_chp_1 conse 22.8 7.3E+02 0.016 24.3 15.3 107 265-384 161-284 (336)
268 PF11768 DUF3312: Protein of u 21.5 9.9E+02 0.021 25.4 12.2 67 360-441 270-338 (545)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1e-42 Score=363.50 Aligned_cols=281 Identities=29% Similarity=0.436 Sum_probs=244.4
Q ss_pred ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceE
Q 012701 141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI 220 (458)
Q Consensus 141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v 220 (458)
..+.++.+||..+.. .....++.|||.++.|..+++||.+|+. .++++++++||++||++......+++
T Consensus 283 ~~~~l~~vGG~~~~~-------~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQG-------QSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCeEEEECCCCCCC-------cccceeEEecCCcCcEeecCCCCccccc----ccEEEECCEEEEEccccCCCcccceE
Confidence 356688888887622 1256889999999999999999999874 44688999999999997434477899
Q ss_pred EEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEE
Q 012701 221 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF 300 (458)
Q Consensus 221 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l 300 (458)
++||+.+|+|+.+++|+.+|..++++++++.||++||.++. ..++++++|||.+++|+.+++|+.+|..+++++++|+|
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKL 430 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEE
Confidence 99999999999999999999999999999999999999976 46899999999999999999999999999999999999
Q ss_pred EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEE
Q 012701 301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK 375 (458)
Q Consensus 301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~ 375 (458)
|++||..+. ...++++++|||.+++|+.+++|+.+|.++ ++++++++||++||.. ..|++
T Consensus 431 Yi~GG~~~~-~~~l~sve~YDP~t~~W~~~~~M~~~R~~~--------------g~a~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 431 YIIGGGDGS-SNCLNSVECYDPETNTWTLIAPMNTRRSGF--------------GVAVLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred EEEcCcCCC-ccccceEEEEcCCCCceeecCCcccccccc--------------eEEEECCEEEEECCccCCCccceEEE
Confidence 999998843 338899999999999999999999999999 8999999999999965 46899
Q ss_pred EeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCceeeeEEE
Q 012701 376 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAV 455 (458)
Q Consensus 376 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v 455 (458)
||+.+++|+.+++|+.++. ++++++.+++||++||.+.. .....+.+|+|.. ++|+....+...+....++|
T Consensus 496 ydp~~~~W~~v~~m~~~rs-----~~g~~~~~~~ly~vGG~~~~-~~l~~ve~ydp~~--d~W~~~~~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRS-----AVGVVVLGGKLYAVGGFDGN-NNLNTVECYDPET--DTWTEVTEPESGRGGAGVAV 567 (571)
T ss_pred EcCCCCceeEcccCccccc-----cccEEEECCEEEEEecccCc-cccceeEEcCCCC--CceeeCCCccccccCcceEE
Confidence 9999999999999998886 36788999999999996554 4667888887755 99999999445555555555
Q ss_pred e
Q 012701 456 M 456 (458)
Q Consensus 456 ~ 456 (458)
+
T Consensus 568 ~ 568 (571)
T KOG4441|consen 568 I 568 (571)
T ss_pred e
Confidence 4
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=347.13 Aligned_cols=253 Identities=16% Similarity=0.241 Sum_probs=218.0
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEE
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA 246 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 246 (458)
.++.|||.+++|..+++||.++.. +++++++++|||+||........+++++|||.+++|..+++||.+|..++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~----~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN----YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc----eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 578999999999999999998853 3468899999999997533335688999999999999999999999999999
Q ss_pred EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCC----------------
Q 012701 247 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSD---------------- 310 (458)
Q Consensus 247 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~---------------- 310 (458)
+++++||++||.++. ..++++++|||.+++|+.+++||.+|..+++++++|+|||+||.++..
T Consensus 349 ~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 349 VIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred EECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 999999999998754 357889999999999999999999999999999999999999976321
Q ss_pred CcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC------CeEEEEeCCC-Cce
Q 012701 311 SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------MEVRKYDKER-RLW 383 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------~~v~~yd~~~-~~W 383 (458)
...++++++|||.+++|+.+++|+.+|..+ ++++++|+||++||.. ..+++||+.+ ++|
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~--------------~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W 493 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP--------------GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW 493 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC--------------cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe
Confidence 113578999999999999999999999988 8899999999999853 3579999999 899
Q ss_pred EEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCce
Q 012701 384 FTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANF 449 (458)
Q Consensus 384 ~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~ 449 (458)
+.+++||.++. ++++++++|+||++||.+.. ..+.+|++ .+++|+.+++..+..+
T Consensus 494 ~~~~~m~~~r~-----~~~~~~~~~~iyv~Gg~~~~----~~~e~yd~--~~~~W~~~~~~~~~~~ 548 (557)
T PHA02713 494 ELITTTESRLS-----ALHTILHDNTIMMLHCYESY----MLQDTFNV--YTYEWNHICHQHSNSY 548 (557)
T ss_pred eEccccCcccc-----cceeEEECCEEEEEeeecce----eehhhcCc--ccccccchhhhcCCce
Confidence 99999999885 46678899999999997652 24566666 4599999988765444
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.7e-36 Score=298.12 Aligned_cols=269 Identities=22% Similarity=0.280 Sum_probs=208.6
Q ss_pred HhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccc
Q 012701 139 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH 218 (458)
Q Consensus 139 lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 218 (458)
++.++.+|++||....... ..++++.||+.+++|..+++++..+...+..+++++++++||||||..... ..+
T Consensus 29 ~~~~~~iyv~GG~~~~~~~------~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~ 101 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEH------IDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFS 101 (341)
T ss_pred EEECCEEEEECCccCCCCc------eeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccC
Confidence 3457899999998543211 135789999999999999887532222222456788999999999985443 567
Q ss_pred eEEEEEcCCCceeeCCCC-----CCCCceeeEEEeCCEEEEEeccCCCC-----CccCeEEEEeCCCCcEEEcCCCC---
Q 012701 219 VIYRYSILTNSWSSGMRM-----NAPRCLFGSASLGEIAILAGGSDLEG-----NILSSAEMYNSETQTWKVLPSMK--- 285 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~p--- 285 (458)
++++||+.+++|+.+++| |.+|..|++++++++|||+||.+..+ ..++++++||+.+++|+.++++.
T Consensus 102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~ 181 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181 (341)
T ss_pred cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence 899999999999999887 78999999999999999999986432 23578999999999999998764
Q ss_pred CCCcceeEEEECCEEEEEccccC------CCCcccceEEEEECCCCceEEcCC---CCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 286 NPRKMCSGVFMDGKFYVIGGIGG------SDSKVLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 286 ~~r~~~~~~~~~g~lyv~GG~~~------~~~~~~~~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
.+|..+++++++++|||+||... .....++++++||+.+++|++++. +|.+|..+ ++
T Consensus 182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~--------------~~ 247 (341)
T PLN02153 182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF--------------AH 247 (341)
T ss_pred CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee--------------ee
Confidence 78899999999999999999641 112235789999999999999874 67888887 78
Q ss_pred EEECCEEEEEEcCC--------------CeEEEEeCCCCceEEec-----cCCCccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 357 AVVNNELYAADYAD--------------MEVRKYDKERRLWFTIG-----RLPERANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 357 ~~~~~~lyv~gg~~--------------~~v~~yd~~~~~W~~v~-----~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
++++++||++||.. +++++||+.+++|+.+. ++|..+. +++++.+..+++||++||..
T Consensus 248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~---~~~~~~v~~~~~~~~~gG~~ 324 (341)
T PLN02153 248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT---AYTTATVYGKNGLLMHGGKL 324 (341)
T ss_pred EEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc---cccccccCCcceEEEEcCcC
Confidence 89999999999952 48999999999999986 3333332 12333333345899999997
Q ss_pred CCCCCeeeEEEeec
Q 012701 418 ASGEGFIELNSWVP 431 (458)
Q Consensus 418 ~~~~~~~~~~~~~~ 431 (458)
.......++..|..
T Consensus 325 ~~~~~~~~~~~~~~ 338 (341)
T PLN02153 325 PTNERTDDLYFYAV 338 (341)
T ss_pred CCCccccceEEEec
Confidence 76666677777754
No 4
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-35 Score=295.02 Aligned_cols=257 Identities=22% Similarity=0.399 Sum_probs=200.9
Q ss_pred cCCCcEEeCCC----CCCCccccccCceEEEeCCEEEEEcCCCCC-cCccceEEEEEcCCCceeeCCCCC-CCC---cee
Q 012701 173 PIRRRWMHLPR----MTSNECFMCSDKESLAVGTELLVFGRELTA-HHISHVIYRYSILTNSWSSGMRMN-APR---CLF 243 (458)
Q Consensus 173 p~~~~W~~l~~----~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~p-~~r---~~~ 243 (458)
+...+|..+++ +|.+|.. +++++++++|||+||.... ....+++++||+.+++|+.+++++ .|| ..|
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~----h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~ 79 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCS----HGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV 79 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCc----ceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence 46678999976 6777754 4568889999999998532 234578999999999999988764 344 368
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC-----CCCCcceeEEEECCEEEEEccccCCC----Cccc
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM-----KNPRKMCSGVFMDGKFYVIGGIGGSD----SKVL 314 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-----p~~r~~~~~~~~~g~lyv~GG~~~~~----~~~~ 314 (458)
++++++++|||+||.+.. ..++++++||+.+++|+.+++| |.+|..|++++++++|||+||..... ...+
T Consensus 80 ~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence 889999999999998755 3478999999999999999887 78999999999999999999986221 1245
Q ss_pred ceEEEEECCCCceEEcCCCC---CCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC-------------CCeEEEEeC
Q 012701 315 TCGEEYDLETETWTEIPNMS---PARGGAARGTEMPASAEAPPLVAVVNNELYAADYA-------------DMEVRKYDK 378 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~~p---~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~-------------~~~v~~yd~ 378 (458)
+++++||+++++|+.++.+. .+|.++ ++++++++||++||. .+++++||+
T Consensus 159 ~~v~~yd~~~~~W~~l~~~~~~~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 159 RTIEAYNIADGKWVQLPDPGENFEKRGGA--------------GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred ceEEEEECCCCeEeeCCCCCCCCCCCCcc--------------eEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 78999999999999998653 678777 788899999999873 257999999
Q ss_pred CCCceEEecc---CCCccCCCCcccEEEEEeCCEEEEEcCCCCC--------CCCeeeEEEeecCCCCCCceEee-----
Q 012701 379 ERRLWFTIGR---LPERANSMNGWGLAFRACGDRLIVIGGPKAS--------GEGFIELNSWVPSEGPPQWNLLA----- 442 (458)
Q Consensus 379 ~~~~W~~v~~---lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~--------~~~~~~~~~~~~~~~~~~W~~l~----- 442 (458)
.+++|++++. +|.++. ++++++++++||||||.... +....++ |.++..+++|+.++
T Consensus 225 ~~~~W~~~~~~g~~P~~r~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v--~~~d~~~~~W~~~~~~~~~ 297 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARS-----VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEG--YALDTETLVWEKLGECGEP 297 (341)
T ss_pred CCCcEEeccccCCCCCCcc-----eeeeEEECCEEEEECcccCCccccccccccccccE--EEEEcCccEEEeccCCCCC
Confidence 9999999974 565553 46778899999999997421 1112244 44555669999985
Q ss_pred ccCCCceeeeEEE
Q 012701 443 RKQSANFVYNCAV 455 (458)
Q Consensus 443 ~~p~~~~~~~~~v 455 (458)
++|.+++.|+++.
T Consensus 298 ~~pr~~~~~~~~~ 310 (341)
T PLN02153 298 AMPRGWTAYTTAT 310 (341)
T ss_pred CCCCccccccccc
Confidence 5677776555543
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.7e-36 Score=314.13 Aligned_cols=235 Identities=30% Similarity=0.490 Sum_probs=210.3
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
...+.||++||........+.++.||+.++.|..+++||.+|..+++++++++||++||.+.....++++++||+.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45678999999976455788999999999999999999999999999999999999999994235689999999999999
Q ss_pred EEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 279 KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
+.+++|+.+|..+++++++|+||++||.++ ...++++++||+.+++|+.+++|+.+|+++ ++++
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg--~~~l~svE~YDp~~~~W~~va~m~~~r~~~--------------gv~~ 425 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDG--EKSLNSVECYDPVTNKWTPVAPMLTRRSGH--------------GVAV 425 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEecccc--ccccccEEEecCCCCcccccCCCCcceeee--------------EEEE
Confidence 999999999999999999999999999984 457889999999999999999999999999 9999
Q ss_pred ECCEEEEEEcCC------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 359 VNNELYAADYAD------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 359 ~~~~lyv~gg~~------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
++|+||++||.. +++.+||+.+++|+.+++|+.++. ++++++++++||++||.+. ......+..|+|.
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-----~~g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-----GFGVAVLNGKIYVVGGFDG-TSALSSVERYDPE 499 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-----cceEEEECCEEEEECCccC-CCccceEEEEcCC
Confidence 999999999833 689999999999999999999986 4668899999999999887 3344457777775
Q ss_pred CCCCCceEeeccCCCceeeeEEEee
Q 012701 433 EGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 433 ~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
. ++|+.++.++.++..+.+++++
T Consensus 500 ~--~~W~~v~~m~~~rs~~g~~~~~ 522 (571)
T KOG4441|consen 500 T--NQWTMVAPMTSPRSAVGVVVLG 522 (571)
T ss_pred C--CceeEcccCccccccccEEEEC
Confidence 5 9999999999999988888764
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=309.93 Aligned_cols=258 Identities=17% Similarity=0.237 Sum_probs=216.6
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEE
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA 246 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 246 (458)
....|++..++|..+++++...+ ++++++++.||++||........+++++||+.+++|..+++|+.+|..++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~ 339 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHYVYC-----FGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT 339 (534)
T ss_pred eeeecchhhhhcccccCcccccc-----ceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE
Confidence 45578988999999887664332 3468899999999998655556678999999999999999999999999999
Q ss_pred EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 247 SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 247 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
+++++||++||.+.. ..++++++||+.+++|+.+++||.+|..++++.++++|||+||.... ...++++++||+.+++
T Consensus 340 ~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 340 VFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN-DELLKTVECFSLNTNK 417 (534)
T ss_pred EECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCC-CcccceEEEEeCCCCe
Confidence 999999999998743 45789999999999999999999999999999999999999997532 3347889999999999
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC--------CeEEEEeCCCCceEEeccCCCccCCCCc
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--------MEVRKYDKERRLWFTIGRLPERANSMNG 398 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--------~~v~~yd~~~~~W~~v~~lp~~~~~~~~ 398 (458)
|+.++++|.+|.++ ++++.+++||++||.. +.+++||+.+++|+.++.+|.++.
T Consensus 418 W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~---- 479 (534)
T PHA03098 418 WSKGSPLPISHYGG--------------CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI---- 479 (534)
T ss_pred eeecCCCCccccCc--------------eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc----
Confidence 99999999999888 7889999999999853 359999999999999999887764
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCceeeeE
Q 012701 399 WGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNC 453 (458)
Q Consensus 399 ~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~ 453 (458)
++++++.+++|||+||..... ....+.+|+++ +++|+.++.+|.......+
T Consensus 480 -~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~--~~~W~~~~~~p~~~~~~~~ 530 (534)
T PHA03098 480 -NASLCIFNNKIYVVGGDKYEY-YINEIEVYDDK--TNTWTLFCKFPKVIGSLEK 530 (534)
T ss_pred -cceEEEECCEEEEEcCCcCCc-ccceeEEEeCC--CCEEEecCCCcccccceee
Confidence 356677899999999976432 24456667665 5999999998875554444
No 7
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.2e-35 Score=290.41 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=197.7
Q ss_pred hccCcEEEeecccCceeeEEEEEeccceEEEEec--CCCcEEeCCCCC-CCccccccCceEEEeCCEEEEEcCCCCCc--
Q 012701 140 IRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDP--IRRRWMHLPRMT-SNECFMCSDKESLAVGTELLVFGRELTAH-- 214 (458)
Q Consensus 140 v~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp--~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~-- 214 (458)
+.++.+|++||... ..++.||+ .+++|..+++|| .+|.. +.+++++++|||+||.....
T Consensus 15 ~~~~~vyv~GG~~~------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~----~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 15 IIGDKVYVGLGSAG------------TSWYKLDLKKPSKGWQKIADFPGGPRNQ----AVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred EECCEEEEEccccC------------CeeEEEECCCCCCCceECCCCCCCCccc----ceEEEECCEEEEEeCCCCCCCC
Confidence 56899999998632 34677885 678999999998 46643 34688999999999975321
Q ss_pred ---CccceEEEEEcCCCceeeCC-CCCCCCceeeEE-EeCCEEEEEeccCCCC---------------------------
Q 012701 215 ---HISHVIYRYSILTNSWSSGM-RMNAPRCLFGSA-SLGEIAILAGGSDLEG--------------------------- 262 (458)
Q Consensus 215 ---~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~--------------------------- 262 (458)
...+++++||+.+++|+.++ ++|.+|..++++ +++++||++||.+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 14578999999999999997 456677777666 7899999999986320
Q ss_pred ------CccCeEEEEeCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEccccCCCCcccceEEEEE--CCCCceEEcCCC
Q 012701 263 ------NILSSAEMYNSETQTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD--LETETWTEIPNM 333 (458)
Q Consensus 263 ------~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd--~~~~~W~~i~~~ 333 (458)
..++.+++||+.+++|+.+++||. +|..+++++++++|||+||.... ......++.|| +.+++|+.+++|
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCC-CccchheEEEEecCCCceeeecCCC
Confidence 014789999999999999999996 68888889999999999998632 22223455555 577899999999
Q ss_pred CCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----------------------CeEEEEeCCCCceEEeccCCC
Q 012701 334 SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----------------------MEVRKYDKERRLWFTIGRLPE 391 (458)
Q Consensus 334 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----------------------~~v~~yd~~~~~W~~v~~lp~ 391 (458)
|.+|... + ...+...+++++++||++||.. ..+.+||+++++|+.+++||.
T Consensus 238 ~~~r~~~------~-~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 238 PPPKSSS------Q-EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred CCCCCCc------c-ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 8876321 0 0000013678899999999853 257899999999999999998
Q ss_pred ccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEE
Q 012701 392 RANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNS 428 (458)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~ 428 (458)
++. ++++++++++|||+||....+..+.+++.
T Consensus 311 ~~~-----~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 342 (346)
T TIGR03547 311 GLA-----YGVSVSWNNGVLLIGGENSGGKAVTDVYL 342 (346)
T ss_pred Cce-----eeEEEEcCCEEEEEeccCCCCCEeeeEEE
Confidence 764 35667899999999998776655555544
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=4.6e-34 Score=294.57 Aligned_cols=256 Identities=21% Similarity=0.359 Sum_probs=201.7
Q ss_pred EEEecCC----CcEEeCCC---CCCCccccccCceEEEeCCEEEEEcCCCCC-cCccceEEEEEcCCCceeeCCCC---C
Q 012701 169 EAFDPIR----RRWMHLPR---MTSNECFMCSDKESLAVGTELLVFGRELTA-HHISHVIYRYSILTNSWSSGMRM---N 237 (458)
Q Consensus 169 ~~yDp~~----~~W~~l~~---~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~---p 237 (458)
+.+||.+ ++|..+++ +|.+|.. |+++++++.|||+||.... ....+++|+||+.+++|+.++.+ |
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~----h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P 215 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCS----HGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccc----cEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCC
Confidence 3347655 79999886 4667753 4568899999999997532 22446899999999999987653 3
Q ss_pred C-CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC---CCCCcceeEEEECCEEEEEccccCCCCcc
Q 012701 238 A-PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM---KNPRKMCSGVFMDGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 238 ~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~g~lyv~GG~~~~~~~~ 313 (458)
. +|..+++++++++|||+||.+.. ..++++++||+.+++|+.++++ |.+|..|++++++++|||+||... ...
T Consensus 216 ~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~--~~~ 292 (470)
T PLN02193 216 HLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA--TAR 292 (470)
T ss_pred CCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC--CCC
Confidence 3 35678899999999999998764 3578999999999999999887 889999999999999999999863 345
Q ss_pred cceEEEEECCCCceEEcCC---CCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----CeEEEEeCCCCceEEe
Q 012701 314 LTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTI 386 (458)
Q Consensus 314 ~~~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----~~v~~yd~~~~~W~~v 386 (458)
++++++||+.+++|+.++. +|.+|.++ .+++++++||++||.. +++++||+.+++|+.+
T Consensus 293 ~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~--------------~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~ 358 (470)
T PLN02193 293 LKTLDSYNIVDKKWFHCSTPGDSFSIRGGA--------------GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQV 358 (470)
T ss_pred cceEEEEECCCCEEEeCCCCCCCCCCCCCc--------------EEEEECCcEEEEECCCCCccCceEEEECCCCEEEEe
Confidence 6789999999999999874 56778777 7888999999999854 6899999999999999
Q ss_pred ccC---CCccCCCCcccEEEEEeCCEEEEEcCCCCCC--------CCeeeEEEeecCCCCCCceEeec------cCCCce
Q 012701 387 GRL---PERANSMNGWGLAFRACGDRLIVIGGPKASG--------EGFIELNSWVPSEGPPQWNLLAR------KQSANF 449 (458)
Q Consensus 387 ~~l---p~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~--------~~~~~~~~~~~~~~~~~W~~l~~------~p~~~~ 449 (458)
+.+ |.++. ++++++++++||||||..... ....++.+|+ ..+++|+.++. .|.+|.
T Consensus 359 ~~~g~~P~~R~-----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D--~~t~~W~~~~~~~~~~~~P~~R~ 431 (470)
T PLN02193 359 ETFGVRPSERS-----VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD--TETLQWERLDKFGEEEETPSSRG 431 (470)
T ss_pred ccCCCCCCCcc-----eeEEEEECCEEEEECCccCCccccccCccceeccEEEEE--cCcCEEEEcccCCCCCCCCCCCc
Confidence 765 54443 466778999999999975421 1223444444 56699999864 356676
Q ss_pred eee
Q 012701 450 VYN 452 (458)
Q Consensus 450 ~~~ 452 (458)
.|+
T Consensus 432 ~~~ 434 (470)
T PLN02193 432 WTA 434 (470)
T ss_pred ccc
Confidence 664
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.4e-34 Score=285.44 Aligned_cols=260 Identities=16% Similarity=0.191 Sum_probs=201.9
Q ss_pred HhccCcEEEeecccCceeeEEEE--EeccceEEEEe-cCCC-cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCc
Q 012701 139 LIRSGELYRLRRLNGVIEHWVYF--SCHLLEWEAFD-PIRR-RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAH 214 (458)
Q Consensus 139 lv~s~~~y~~gg~~~~~~~~l~~--~~~~~~~~~yD-p~~~-~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~ 214 (458)
.+.++.+|++||.+....++--. .....+++.|+ +..+ +|..+++||.+|..+ +++++++.||++||.....
T Consensus 10 ~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~----~~~~~~~~lyviGG~~~~~ 85 (323)
T TIGR03548 10 GIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYG----ASVSVENGIYYIGGSNSSE 85 (323)
T ss_pred eEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccce----EEEEECCEEEEEcCCCCCC
Confidence 45688999999987653221000 00123566664 4333 799999999988543 3578899999999985433
Q ss_pred CccceEEEEEcCCCce----eeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCC-CCc
Q 012701 215 HISHVIYRYSILTNSW----SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN-PRK 289 (458)
Q Consensus 215 ~~~~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~ 289 (458)
..+++++||+.+++| +.+++||.+|..+++++++++|||+||.... ..++++++||+.+++|+.+++||. +|.
T Consensus 86 -~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~ 163 (323)
T TIGR03548 86 -RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRV 163 (323)
T ss_pred -CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCC
Confidence 567899999999998 7889999999999999999999999997533 347899999999999999999884 788
Q ss_pred ceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC---CC--CCCCCCCCCCCCcCCCCEEEEECCEEE
Q 012701 290 MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP---AR--GGAARGTEMPASAEAPPLVAVVNNELY 364 (458)
Q Consensus 290 ~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~---~r--~~~~~~~~~~~~~~~~~~~~~~~~~ly 364 (458)
.+.+++++++|||+||..+ ....++++||+++++|+.+++|+. ++ .++ .++++.+++||
T Consensus 164 ~~~~~~~~~~iYv~GG~~~---~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~-------------~~~~~~~~~iy 227 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSN---IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGA-------------ASIKINESLLL 227 (323)
T ss_pred cceEEEECCEEEEEcCCCC---ccccceEEEecCCCeeEECCCCCCCCCceeccce-------------eEEEECCCEEE
Confidence 8888899999999999863 224568999999999999987642 22 222 13445579999
Q ss_pred EEEcCC-------------------------------------CeEEEEeCCCCceEEeccCCC-ccCCCCcccEEEEEe
Q 012701 365 AADYAD-------------------------------------MEVRKYDKERRLWFTIGRLPE-RANSMNGWGLAFRAC 406 (458)
Q Consensus 365 v~gg~~-------------------------------------~~v~~yd~~~~~W~~v~~lp~-~~~~~~~~~~a~~~~ 406 (458)
++||.. +.+++||+.+++|+.++++|. ++ .+++++++
T Consensus 228 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~~~~~~~~ 302 (323)
T TIGR03548 228 CIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFAR-----CGAALLLT 302 (323)
T ss_pred EECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccccc-----CchheEEE
Confidence 999854 469999999999999998874 33 24678899
Q ss_pred CCEEEEEcCCCCCCCCeee
Q 012701 407 GDRLIVIGGPKASGEGFIE 425 (458)
Q Consensus 407 ~~~lyv~GG~~~~~~~~~~ 425 (458)
+++||++||...++.++.+
T Consensus 303 ~~~iyv~GG~~~pg~rt~~ 321 (323)
T TIGR03548 303 GNNIFSINGELKPGVRTPD 321 (323)
T ss_pred CCEEEEEeccccCCcCCcC
Confidence 9999999998877655543
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=304.22 Aligned_cols=217 Identities=21% Similarity=0.267 Sum_probs=188.8
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+.....++.+++||+.+++|..+++||.+|..+++++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46899999999999999999999999999999999999998643345789999999999999999999999999999999
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-------
Q 012701 298 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------- 370 (458)
Q Consensus 298 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------- 370 (458)
|+||++||.++. ..++++++||+.+++|+.+++||.+|..+ ++++++|+||++||..
T Consensus 352 g~IYviGG~~~~--~~~~sve~Ydp~~~~W~~~~~mp~~r~~~--------------~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 352 DTIYAIGGQNGT--NVERTIECYTMGDDKWKMLPDMPIALSSY--------------GMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred CEEEEECCcCCC--CCCceEEEEECCCCeEEECCCCCcccccc--------------cEEEECCEEEEEeCCCccccccc
Confidence 999999998632 35678999999999999999999999988 7899999999999853
Q ss_pred ----------------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCC
Q 012701 371 ----------------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEG 434 (458)
Q Consensus 371 ----------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 434 (458)
+.+++||+.+++|+.+++|+.++. ++++++++|+|||+||..........+.+|+| .
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp--~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNT--N 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCcccc-----cCcEEEECCEEEEEeCCCCCCccceeEEEecC--C
Confidence 469999999999999999998875 35678899999999997643222223455665 5
Q ss_pred C-CCceEeeccCCCceeeeEEEee
Q 012701 435 P-PQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 435 ~-~~W~~l~~~p~~~~~~~~~v~g 457 (458)
+ ++|+.++++|..|..+++++++
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred CCCCeeEccccCcccccceeEEEC
Confidence 5 6999999999999999998875
No 11
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.4e-34 Score=285.56 Aligned_cols=252 Identities=16% Similarity=0.219 Sum_probs=195.9
Q ss_pred CCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEc--CCCceeeCCCCC-CCCceeeEEEeCCEEEEEec
Q 012701 181 LPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSI--LTNSWSSGMRMN-APRCLFGSASLGEIAILAGG 257 (458)
Q Consensus 181 l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG 257 (458)
+|+||.++.. ..+++++++|||+||.. .+.+++||+ .+++|+.+++|| .+|..+++++++++|||+||
T Consensus 1 ~~~lp~~~~~----~~~~~~~~~vyv~GG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG 71 (346)
T TIGR03547 1 LPDLPVGFKN----GTGAIIGDKVYVGLGSA-----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGG 71 (346)
T ss_pred CCCCCccccC----ceEEEECCEEEEEcccc-----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeC
Confidence 4678877753 33568899999999973 367899996 678999999999 58999999999999999999
Q ss_pred cCCCC-----CccCeEEEEeCCCCcEEEcC-CCCCCCcceeEE-EECCEEEEEccccCCCC-------------------
Q 012701 258 SDLEG-----NILSSAEMYNSETQTWKVLP-SMKNPRKMCSGV-FMDGKFYVIGGIGGSDS------------------- 311 (458)
Q Consensus 258 ~~~~~-----~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~------------------- 311 (458)
.+... ..++++++||+.+++|+.++ ++|.+|..++++ +++++||++||......
T Consensus 72 ~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (346)
T TIGR03547 72 IGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDK 151 (346)
T ss_pred CCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhh
Confidence 86432 24688999999999999997 466777777776 78999999999762100
Q ss_pred -------------cccceEEEEECCCCceEEcCCCCC-CCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC------C
Q 012701 312 -------------KVLTCGEEYDLETETWTEIPNMSP-ARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------M 371 (458)
Q Consensus 312 -------------~~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------~ 371 (458)
..++.+++||+.+++|+.+++||. +|.++ ++++++++||++||.. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 152 LIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGS--------------AIVHKGNKLLLINGEIKPGLRTA 217 (346)
T ss_pred hHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCc--------------eEEEECCEEEEEeeeeCCCccch
Confidence 013789999999999999999986 57777 7889999999999853 3
Q ss_pred eEEEEe--CCCCceEEeccCCCccCC--CCcccEEEEEeCCEEEEEcCCCCCCC----------------CeeeEEEeec
Q 012701 372 EVRKYD--KERRLWFTIGRLPERANS--MNGWGLAFRACGDRLIVIGGPKASGE----------------GFIELNSWVP 431 (458)
Q Consensus 372 ~v~~yd--~~~~~W~~v~~lp~~~~~--~~~~~~a~~~~~~~lyv~GG~~~~~~----------------~~~~~~~~~~ 431 (458)
.++.|| +.+++|+.+++||.++.. ....++++++++++|||+||....+. ....+.+|++
T Consensus 218 ~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred heEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Confidence 456665 467799999999876531 11124556788999999999753211 1124677888
Q ss_pred CCCCCCceEeeccCCCceeeeEEEee
Q 012701 432 SEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 432 ~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
+. ++|+.++.+|.++..+++++++
T Consensus 298 ~~--~~W~~~~~lp~~~~~~~~~~~~ 321 (346)
T TIGR03547 298 DN--GKWSKVGKLPQGLAYGVSVSWN 321 (346)
T ss_pred cC--CcccccCCCCCCceeeEEEEcC
Confidence 64 8999999999999888877654
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.9e-33 Score=289.99 Aligned_cols=269 Identities=19% Similarity=0.262 Sum_probs=207.2
Q ss_pred HhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccc
Q 012701 139 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH 218 (458)
Q Consensus 139 lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 218 (458)
++.++.+|++||....... ..+++++||+.+++|..++++...+...+..+++++++++||||||.... ...+
T Consensus 172 ~~~~~~iyv~GG~~~~~~~------~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~n 244 (470)
T PLN02193 172 AQVGNKIYSFGGEFTPNQP------IDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYN 244 (470)
T ss_pred EEECCEEEEECCcCCCCCC------eeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCc
Confidence 4567899999997542211 13578999999999998876532111111245678899999999998543 3578
Q ss_pred eEEEEEcCCCceeeCCCC---CCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC---CCCCCccee
Q 012701 219 VIYRYSILTNSWSSGMRM---NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS---MKNPRKMCS 292 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~ 292 (458)
++|+||+.+++|++++++ |.+|..|++++++++|||+||++.. ..++++++||+.+++|+.++. +|.+|..++
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~ 323 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG 323 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE
Confidence 999999999999999888 8899999999999999999999765 357889999999999999874 678899999
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC---CCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC
Q 012701 293 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM---SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 369 (458)
Q Consensus 293 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~ 369 (458)
+++++++|||+||..+ ..++++++||+.+++|+.++.+ |.+|..+ ++++++++||++||.
T Consensus 324 ~~~~~gkiyviGG~~g---~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~--------------~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 324 LEVVQGKVWVVYGFNG---CEVDDVHYYDPVQDKWTQVETFGVRPSERSVF--------------ASAAVGKHIVIFGGE 386 (470)
T ss_pred EEEECCcEEEEECCCC---CccCceEEEECCCCEEEEeccCCCCCCCccee--------------EEEEECCEEEEECCc
Confidence 9999999999999763 2368899999999999999754 7788887 788999999999984
Q ss_pred C--------------CeEEEEeCCCCceEEeccCCCc--cCCCCcccE-EEEEe--CCEEEEEcCCCCCCCCeeeEEEee
Q 012701 370 D--------------MEVRKYDKERRLWFTIGRLPER--ANSMNGWGL-AFRAC--GDRLIVIGGPKASGEGFIELNSWV 430 (458)
Q Consensus 370 ~--------------~~v~~yd~~~~~W~~v~~lp~~--~~~~~~~~~-a~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 430 (458)
. +++++||+.+++|+.+..++.. .....+++. +...+ ++.||+|||.........+++.+.
T Consensus 387 ~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~ 466 (470)
T PLN02193 387 IAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYG 466 (470)
T ss_pred cCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEe
Confidence 2 4799999999999999765421 111112322 12223 346999999976666666666665
Q ss_pred cC
Q 012701 431 PS 432 (458)
Q Consensus 431 ~~ 432 (458)
.+
T Consensus 467 ~~ 468 (470)
T PLN02193 467 ID 468 (470)
T ss_pred cC
Confidence 43
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=290.35 Aligned_cols=211 Identities=18% Similarity=0.268 Sum_probs=183.8
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+++.||++||.... ...+.+++|||.+++|..+++|+.+|..++++.++++||++||.+.. .++++||+.+++
T Consensus 268 ~~~~~~lyviGG~~~~-~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~ 342 (480)
T PHA02790 268 THVGEVVYLIGGWMNN-EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAA 342 (480)
T ss_pred EEECCEEEEEcCCCCC-CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCe
Confidence 4589999999997543 35678999999999999999999999999999999999999997632 579999999999
Q ss_pred EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 278 WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
|+.+++||.+|..+++++++|+|||+||..+. .+++++|||.+++|+.+++|+.+|..+ +++
T Consensus 343 W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~~m~~~r~~~--------------~~~ 404 (480)
T PHA02790 343 WVNMPSLLKPRCNPAVASINNVIYVIGGHSET----DTTTEYLLPNHDQWQFGPSTYYPHYKS--------------CAL 404 (480)
T ss_pred EEECCCCCCCCcccEEEEECCEEEEecCcCCC----CccEEEEeCCCCEEEeCCCCCCccccc--------------eEE
Confidence 99999999999999999999999999997632 367899999999999999999999988 888
Q ss_pred EECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCC
Q 012701 358 VVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 437 (458)
Q Consensus 358 ~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
+++|+||++|| .+.+||+.+++|+.+++||.++. ++++++++|+|||+||.+.. .....+.+|+|.. ++
T Consensus 405 ~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-----~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~~--~~ 473 (480)
T PHA02790 405 VFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-----NPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNRT--YS 473 (480)
T ss_pred EECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-----ccEEEEECCEEEEECCcCCC-cccceEEEEECCC--Ce
Confidence 99999999997 47899999999999999998775 46678899999999997633 2345677888765 99
Q ss_pred ceEee
Q 012701 438 WNLLA 442 (458)
Q Consensus 438 W~~l~ 442 (458)
|+...
T Consensus 474 W~~~~ 478 (480)
T PHA02790 474 WNIWD 478 (480)
T ss_pred EEecC
Confidence 98753
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=5.3e-33 Score=279.50 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=201.6
Q ss_pred HhccCcEEEeecccCceeeEEEEEeccceEEEEecC--CCcEEeCCCCCC-CccccccCceEEEeCCEEEEEcCCCC-C-
Q 012701 139 LIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPI--RRRWMHLPRMTS-NECFMCSDKESLAVGTELLVFGRELT-A- 213 (458)
Q Consensus 139 lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~--~~~W~~l~~~p~-~~~~~~~~~~~~~~~~~lyv~GG~~~-~- 213 (458)
.+.++.+|+++|.... .++.||+. +++|..++++|. +|. .+.+++++++|||+||... .
T Consensus 35 ~~~~~~iyv~gG~~~~------------~~~~~d~~~~~~~W~~l~~~p~~~r~----~~~~v~~~~~IYV~GG~~~~~~ 98 (376)
T PRK14131 35 AIDNNTVYVGLGSAGT------------SWYKLDLNAPSKGWTKIAAFPGGPRE----QAVAAFIDGKLYVFGGIGKTNS 98 (376)
T ss_pred EEECCEEEEEeCCCCC------------eEEEEECCCCCCCeEECCcCCCCCcc----cceEEEECCEEEEEcCCCCCCC
Confidence 4568899999886432 35667775 579999999984 553 3456889999999999754 1
Q ss_pred ---cCccceEEEEEcCCCceeeCCC-CCCCCceeeEEE-eCCEEEEEeccCCCC--------------------------
Q 012701 214 ---HHISHVIYRYSILTNSWSSGMR-MNAPRCLFGSAS-LGEIAILAGGSDLEG-------------------------- 262 (458)
Q Consensus 214 ---~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~-------------------------- 262 (458)
....+++++||+.+++|+.+++ +|.++..|++++ .+++||++||.+...
T Consensus 99 ~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~ 178 (376)
T PRK14131 99 EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYF 178 (376)
T ss_pred CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHh
Confidence 1235789999999999999986 466777777666 899999999975310
Q ss_pred -------CccCeEEEEeCCCCcEEEcCCCCC-CCcceeEEEECCEEEEEccccCCCCcccceE--EEEECCCCceEEcCC
Q 012701 263 -------NILSSAEMYNSETQTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCG--EEYDLETETWTEIPN 332 (458)
Q Consensus 263 -------~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v--~~yd~~~~~W~~i~~ 332 (458)
...+.+++||+.+++|+.+++||. +|..++++.++++|||+||..... .....+ +.||+++++|..+++
T Consensus 179 ~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 179 DKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred cCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCC-cCChhheEEEecCCCcceeecCC
Confidence 124789999999999999999996 677888889999999999975221 122333 356789999999999
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----------------------CeEEEEeCCCCceEEeccCC
Q 012701 333 MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----------------------MEVRKYDKERRLWFTIGRLP 390 (458)
Q Consensus 333 ~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----------------------~~v~~yd~~~~~W~~v~~lp 390 (458)
||.+|.++. .+ ..+...+++++++||++||.. ..+.+||+++++|+.++.||
T Consensus 258 ~p~~~~~~~---~~---~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 331 (376)
T PRK14131 258 LPPAPGGSS---QE---GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELP 331 (376)
T ss_pred CCCCCcCCc---CC---ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCC
Confidence 998775330 00 000012567899999999853 13578999999999999999
Q ss_pred CccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 391 ERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.++. ++++++++++|||+||....+....+++.|.+..
T Consensus 332 ~~r~-----~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 332 QGLA-----YGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred CCcc-----ceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 8874 3567889999999999876666677888888765
No 15
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=5.2e-33 Score=292.75 Aligned_cols=232 Identities=20% Similarity=0.347 Sum_probs=199.9
Q ss_pred HHHHhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcC
Q 012701 136 FRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHH 215 (458)
Q Consensus 136 wr~lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~ 215 (458)
+.+++.++.+|++||...... ..++++.||+.+++|..+++|+.+|..+ ++++++++||++||.... .
T Consensus 288 ~~~~~~~~~lyv~GG~~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~R~~~----~~~~~~~~lyv~GG~~~~-~ 355 (534)
T PHA03098 288 FGSVVLNNVIYFIGGMNKNNL-------SVNSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNRIYVIGGIYNS-I 355 (534)
T ss_pred ceEEEECCEEEEECCCcCCCC-------eeccEEEEeCCCCeeeECCCCCcccccc----eEEEECCEEEEEeCCCCC-E
Confidence 345677889999999865431 1357899999999999999999888643 468889999999998633 3
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
..+++++||+.+++|+.+++||.+|..++++.++++|||+||.......++++++||+.+++|+.+++||.+|..+++++
T Consensus 356 ~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 435 (534)
T PHA03098 356 SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY 435 (534)
T ss_pred ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE
Confidence 56789999999999999999999999999999999999999986555567899999999999999999999999999999
Q ss_pred ECCEEEEEccccCCC-CcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----
Q 012701 296 MDGKFYVIGGIGGSD-SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD---- 370 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~-~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~---- 370 (458)
++++|||+||..... ....+.+++||+.+++|+.++++|.+|..+ ++++++++||++||..
T Consensus 436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~--------------~~~~~~~~iyv~GG~~~~~~ 501 (534)
T PHA03098 436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA--------------SLCIFNNKIYVVGGDKYEYY 501 (534)
T ss_pred ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc--------------eEEEECCEEEEEcCCcCCcc
Confidence 999999999986322 123567999999999999999999998887 7888999999999854
Q ss_pred -CeEEEEeCCCCceEEeccCCCcc
Q 012701 371 -MEVRKYDKERRLWFTIGRLPERA 393 (458)
Q Consensus 371 -~~v~~yd~~~~~W~~v~~lp~~~ 393 (458)
+.+++||+.+++|+.++.+|...
T Consensus 502 ~~~v~~yd~~~~~W~~~~~~p~~~ 525 (534)
T PHA03098 502 INEIEVYDDKTNTWTLFCKFPKVI 525 (534)
T ss_pred cceeEEEeCCCCEEEecCCCcccc
Confidence 68999999999999999887754
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4e-32 Score=268.03 Aligned_cols=245 Identities=18% Similarity=0.204 Sum_probs=191.5
Q ss_pred CceEEEeCCEEEEEcCCCCCc---------CccceEEEEEcCC--CceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCC
Q 012701 194 DKESLAVGTELLVFGRELTAH---------HISHVIYRYSILT--NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEG 262 (458)
Q Consensus 194 ~~~~~~~~~~lyv~GG~~~~~---------~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 262 (458)
+..++++++.|||+||.+... ...+++++|+..+ .+|..+++||.+|..+++++++++||++||.+..
T Consensus 6 g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~- 84 (323)
T TIGR03548 6 GCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSS- 84 (323)
T ss_pred eEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCC-
Confidence 345678899999999986432 2345788886332 3799999999999988899999999999998754
Q ss_pred CccCeEEEEeCCCCcE----EEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC-CC
Q 012701 263 NILSSAEMYNSETQTW----KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP-AR 337 (458)
Q Consensus 263 ~~~~~v~~yd~~t~~W----~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~-~r 337 (458)
..++++++||+.+++| +.+++||.+|..+++++++++|||+||... ....+++++||+.+++|+++++||. +|
T Consensus 85 ~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 85 ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC--CccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 3578999999999998 789999999999999999999999999752 3347889999999999999998874 67
Q ss_pred CCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----CeEEEEeCCCCceEEeccCCCccCCCCcc-cEEEEEeCCEEEE
Q 012701 338 GGAARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTIGRLPERANSMNGW-GLAFRACGDRLIV 412 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~-~~a~~~~~~~lyv 412 (458)
..+ .+++++++||++||.. .++++||+.+++|+.++.|+......... +.++++.+++|||
T Consensus 163 ~~~--------------~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv 228 (323)
T TIGR03548 163 VQP--------------VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC 228 (323)
T ss_pred Ccc--------------eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE
Confidence 776 7788999999999864 46789999999999998774321111111 2344556799999
Q ss_pred EcCCCCCC-------------------------------CCeeeEEEeecCCCCCCceEeeccC-CCceeeeEEEee
Q 012701 413 IGGPKASG-------------------------------EGFIELNSWVPSEGPPQWNLLARKQ-SANFVYNCAVMG 457 (458)
Q Consensus 413 ~GG~~~~~-------------------------------~~~~~~~~~~~~~~~~~W~~l~~~p-~~~~~~~~~v~g 457 (458)
+||.+... .....+.+|++.. ++|+.++.+| ..|..+++++++
T Consensus 229 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 229 IGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRT--GKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred ECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCC--CeeeEcccccccccCchheEEEC
Confidence 99986321 0013466666654 8999999888 578778777765
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.6e-32 Score=273.46 Aligned_cols=256 Identities=16% Similarity=0.187 Sum_probs=197.1
Q ss_pred cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcC--CCceeeCCCCC-CCCceeeEEEeCCEEE
Q 012701 177 RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSIL--TNSWSSGMRMN-APRCLFGSASLGEIAI 253 (458)
Q Consensus 177 ~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~ly 253 (458)
.+..+|+||.++... ++++++++|||+||.. .+.+++||+. +++|..+++|| .+|..++++.++++||
T Consensus 18 ~~~~l~~lP~~~~~~----~~~~~~~~iyv~gG~~-----~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IY 88 (376)
T PRK14131 18 NAEQLPDLPVPFKNG----TGAIDNNTVYVGLGSA-----GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLY 88 (376)
T ss_pred ecccCCCCCcCccCC----eEEEECCEEEEEeCCC-----CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEE
Confidence 467789999887543 3577899999999973 3458999986 48999999998 5899999999999999
Q ss_pred EEeccCCC-----CCccCeEEEEeCCCCcEEEcCC-CCCCCcceeEEE-ECCEEEEEccccCCC----------------
Q 012701 254 LAGGSDLE-----GNILSSAEMYNSETQTWKVLPS-MKNPRKMCSGVF-MDGKFYVIGGIGGSD---------------- 310 (458)
Q Consensus 254 v~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~-~~g~lyv~GG~~~~~---------------- 310 (458)
|+||.+.. ...++++++||+.+++|+.+++ +|.++..|++++ .+++|||+||.....
T Consensus 89 V~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~ 168 (376)
T PRK14131 89 VFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKT 168 (376)
T ss_pred EEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchh
Confidence 99998641 1346889999999999999985 467777777776 899999999975210
Q ss_pred ----------------CcccceEEEEECCCCceEEcCCCCC-CCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---
Q 012701 311 ----------------SKVLTCGEEYDLETETWTEIPNMSP-ARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--- 370 (458)
Q Consensus 311 ----------------~~~~~~v~~yd~~~~~W~~i~~~p~-~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--- 370 (458)
....+.+++||+.+++|+.++++|. ++.++ ++++++++||++||..
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~--------------a~v~~~~~iYv~GG~~~~~ 234 (376)
T PRK14131 169 PKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGS--------------AVVIKGNKLWLINGEIKPG 234 (376)
T ss_pred hhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcc--------------eEEEECCEEEEEeeeECCC
Confidence 0124689999999999999999986 67777 7888899999999842
Q ss_pred ---CeEE--EEeCCCCceEEeccCCCccCCC---CcccEEEEEeCCEEEEEcCCCCCCC-------------C---eeeE
Q 012701 371 ---MEVR--KYDKERRLWFTIGRLPERANSM---NGWGLAFRACGDRLIVIGGPKASGE-------------G---FIEL 426 (458)
Q Consensus 371 ---~~v~--~yd~~~~~W~~v~~lp~~~~~~---~~~~~a~~~~~~~lyv~GG~~~~~~-------------~---~~~~ 426 (458)
..++ .||+++++|..++.||.++... ...++.+++++++|||+||....+. + ...+
T Consensus 235 ~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (376)
T PRK14131 235 LRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSD 314 (376)
T ss_pred cCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeeh
Confidence 2333 5677899999999998765321 1123335678999999999764321 0 1134
Q ss_pred EEeecCCCCCCceEeeccCCCceeeeEEEee
Q 012701 427 NSWVPSEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 427 ~~~~~~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
.+|+++. ++|+.++.+|.++..+++++++
T Consensus 315 e~yd~~~--~~W~~~~~lp~~r~~~~av~~~ 343 (376)
T PRK14131 315 EIYALVN--GKWQKVGELPQGLAYGVSVSWN 343 (376)
T ss_pred heEEecC--CcccccCcCCCCccceEEEEeC
Confidence 5677754 8999999999999888877654
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=283.75 Aligned_cols=203 Identities=18% Similarity=0.284 Sum_probs=179.6
Q ss_pred ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceE
Q 012701 141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI 220 (458)
Q Consensus 141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v 220 (458)
.++.+|++||..... ....++.|||.+++|..+++|+.+|..+ ++++++++||++||... .+++
T Consensus 270 ~~~~lyviGG~~~~~--------~~~~v~~Ydp~~~~W~~~~~m~~~r~~~----~~v~~~~~iYviGG~~~----~~sv 333 (480)
T PHA02790 270 VGEVVYLIGGWMNNE--------IHNNAIAVNYISNNWIPIPPMNSPRLYA----SGVPANNKLYVVGGLPN----PTSV 333 (480)
T ss_pred ECCEEEEEcCCCCCC--------cCCeEEEEECCCCEEEECCCCCchhhcc----eEEEECCEEEEECCcCC----CCce
Confidence 577899999875432 2457889999999999999999988644 45789999999999742 2568
Q ss_pred EEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEE
Q 012701 221 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF 300 (458)
Q Consensus 221 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l 300 (458)
++|||.+++|..+++||.+|..+++++++++||++||.++. ...+++|||.+++|+.+++|+.+|..+++++++|+|
T Consensus 334 e~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~I 410 (480)
T PHA02790 334 ERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRL 410 (480)
T ss_pred EEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEE
Confidence 99999999999999999999999999999999999998643 367999999999999999999999999999999999
Q ss_pred EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEE
Q 012701 301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK 375 (458)
Q Consensus 301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~ 375 (458)
||+||. +++||+++++|+.+++|+.+|..+ ++++++|+||++||.. +.+++
T Consensus 411 Yv~GG~----------~e~ydp~~~~W~~~~~m~~~r~~~--------------~~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 411 FLVGRN----------AEFYCESSNTWTLIDDPIYPRDNP--------------ELIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred EEECCc----------eEEecCCCCcEeEcCCCCCCcccc--------------EEEEECCEEEEECCcCCCcccceEEE
Confidence 999983 578999999999999999999988 8999999999999853 57999
Q ss_pred EeCCCCceEEe
Q 012701 376 YDKERRLWFTI 386 (458)
Q Consensus 376 yd~~~~~W~~v 386 (458)
||+.+++|+..
T Consensus 467 Yd~~~~~W~~~ 477 (480)
T PHA02790 467 YNNRTYSWNIW 477 (480)
T ss_pred EECCCCeEEec
Confidence 99999999754
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=2.6e-31 Score=238.95 Aligned_cols=259 Identities=16% Similarity=0.295 Sum_probs=208.0
Q ss_pred HHhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCC--------CCCc-cccccCceEEEeCCEEEEEc
Q 012701 138 SLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRM--------TSNE-CFMCSDKESLAVGTELLVFG 208 (458)
Q Consensus 138 ~lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~--------p~~~-~~~~~~~~~~~~~~~lyv~G 208 (458)
++.....+|.+||+.... .|--..-.++.++|..+-+|+.+|+- +.+. .+..-+|+++.+.+++||.|
T Consensus 19 avaVG~riYSFGGYCsGe---dy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 19 AVAVGSRIYSFGGYCSGE---DYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred eeeecceEEecCCccccc---ccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 355688899999986532 11112245789999999999999871 1111 12223678899999999999
Q ss_pred CCCCCcCccceEEEEEcCCCceeeC---CCCCCCCceeeEEEeCCEEEEEeccCCCC-CccCeEEEEeCCCCcEEEcC--
Q 012701 209 RELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASLGEIAILAGGSDLEG-NILSSAEMYNSETQTWKVLP-- 282 (458)
Q Consensus 209 G~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~-- 282 (458)
|.++.....+.+|.|||.|+.|.+. ..+|.+|.+|+++++++.+|+|||+.... ++.++++++|..|-+|+.+.
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 9988777899999999999999765 45789999999999999999999996443 46789999999999999875
Q ss_pred -CCCCCCcceeEEEECCEEEEEccccCC-------CCcccceEEEEECCCCceEEcCC---CCCCCCCCCCCCCCCCCcC
Q 012701 283 -SMKNPRKMCSGVFMDGKFYVIGGIGGS-------DSKVLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAE 351 (458)
Q Consensus 283 -~~p~~r~~~~~~~~~g~lyv~GG~~~~-------~~~~~~~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~~~~~~ 351 (458)
..|.-|.+|+++++++.+|||||.... +..+.+.+..+|++|+.|...+. .|..|..+
T Consensus 176 g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSH----------- 244 (392)
T KOG4693|consen 176 GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSH----------- 244 (392)
T ss_pred CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccccc-----------
Confidence 556678899999999999999997622 23466789999999999998864 57778888
Q ss_pred CCCEEEEECCEEEEEEcCC-------CeEEEEeCCCCceEEec---cCCCccCCCCcccEEEEEeCCEEEEEcCCCC
Q 012701 352 APPLVAVVNNELYAADYAD-------MEVRKYDKERRLWFTIG---RLPERANSMNGWGLAFRACGDRLIVIGGPKA 418 (458)
Q Consensus 352 ~~~~~~~~~~~lyv~gg~~-------~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~ 418 (458)
+..++|++||+|||.. +++++||+.+..|..|. .-|.++.+ ..+++.+++||+|||..-
T Consensus 245 ---S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRR-----qC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 245 ---STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRR-----QCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ---ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccc-----eeEEEECCEEEEecCCCC
Confidence 8999999999999865 78999999999999984 45655542 456788999999999653
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=229.63 Aligned_cols=243 Identities=17% Similarity=0.229 Sum_probs=198.9
Q ss_pred CceEEEeCCEEEEEcCCCCC----cCccceEEEEEcCCCceeeCCC-------------CCCCCceeeEEEeCCEEEEEe
Q 012701 194 DKESLAVGTELLVFGRELTA----HHISHVIYRYSILTNSWSSGMR-------------MNAPRCLFGSASLGEIAILAG 256 (458)
Q Consensus 194 ~~~~~~~~~~lyv~GG~~~~----~~~~~~v~~yd~~t~~W~~~~~-------------~p~~r~~~~~~~~~~~lyv~G 256 (458)
+|+++++|.+||-|||+... ....-+|+++|..+-+|+++++ .|..|++|+.+.+++++||-|
T Consensus 16 NHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWG 95 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWG 95 (392)
T ss_pred cceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEc
Confidence 56679999999999997432 2233478999999999999876 245699999999999999999
Q ss_pred ccCCCCCccCeEEEEeCCCCcEEEcC---CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC-
Q 012701 257 GSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN- 332 (458)
Q Consensus 257 G~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~- 332 (458)
|.+......+.++.||+++++|.+.. -+|.+|.+|++++.++.+|||||+........++++++|+.|.+|+++..
T Consensus 96 GRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk 175 (392)
T KOG4693|consen 96 GRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK 175 (392)
T ss_pred CccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhcc
Confidence 99887677889999999999998753 57899999999999999999999986666778899999999999999863
Q ss_pred --CCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC--------------CeEEEEeCCCCceEEec---cCCCcc
Q 012701 333 --MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--------------MEVRKYDKERRLWFTIG---RLPERA 393 (458)
Q Consensus 333 --~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--------------~~v~~yd~~~~~W~~v~---~lp~~~ 393 (458)
.|.-|..+ +..++++.+|||||.. +.|..+|..++.|...+ ..|..+
T Consensus 176 g~PprwRDFH--------------~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GR 241 (392)
T KOG4693|consen 176 GDPPRWRDFH--------------TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGR 241 (392)
T ss_pred CCCchhhhhh--------------hhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcc
Confidence 44556666 6788999999999843 57899999999999875 345555
Q ss_pred CCCCcccEEEEEeCCEEEEEcCCCCCC-CCeeeEEEeecCCCCCCceEeec---cCCCceeeeEEEee
Q 012701 394 NSMNGWGLAFRACGDRLIVIGGPKASG-EGFIELNSWVPSEGPPQWNLLAR---KQSANFVYNCAVMG 457 (458)
Q Consensus 394 ~~~~~~~~a~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~W~~l~~---~p~~~~~~~~~v~g 457 (458)
.+ +++.+++++||+|||++..- ....++.+++| .+-.|+.|.. -|.+|-.++|+|+|
T Consensus 242 RS-----HS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~~~Gk~P~aRRRqC~~v~g 302 (392)
T KOG4693|consen 242 RS-----HSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVISVRGKYPSARRRQCSVVSG 302 (392)
T ss_pred cc-----cceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeeeccCCCCCcccceeEEEEC
Confidence 53 66778999999999987532 23445555554 6699999965 47899999999987
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.94 E-value=9.7e-25 Score=224.89 Aligned_cols=247 Identities=23% Similarity=0.375 Sum_probs=197.3
Q ss_pred CCCCCccccccCceEEEeCCEEEEEcCCCCCcCccc-eEEEEEcCCCceeeCC---CCCCCCceeeEEEeCCEEEEEecc
Q 012701 183 RMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH-VIYRYSILTNSWSSGM---RMNAPRCLFGSASLGEIAILAGGS 258 (458)
Q Consensus 183 ~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~ 258 (458)
..|.+|.. |+++.+++++|||||......... ++|++|..+..|.... ..|.+|.+|.++.++++||++||.
T Consensus 56 ~~p~~R~~----hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~ 131 (482)
T KOG0379|consen 56 VGPIPRAG----HSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGT 131 (482)
T ss_pred CCcchhhc----cceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccc
Confidence 34555654 445777999999999865543333 6999999999998763 467899999999999999999999
Q ss_pred CCCCCccCeEEEEeCCCCcEEEcC---CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcC---C
Q 012701 259 DLEGNILSSAEMYNSETQTWKVLP---SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---N 332 (458)
Q Consensus 259 ~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~---~ 332 (458)
+.....+++++.||+.|++|+.+. .+|.+|.+|++++++.+|||+||.+.. ...++++++||+++.+|.++. .
T Consensus 132 ~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 132 DKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred cCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCc-ccceeeeeeeccccccceecccCCC
Confidence 875566899999999999999874 578999999999999999999999833 337899999999999999986 4
Q ss_pred CCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC------CeEEEEeCCCCceEEec---cCCCccCCCCcccEEE
Q 012701 333 MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------MEVRKYDKERRLWFTIG---RLPERANSMNGWGLAF 403 (458)
Q Consensus 333 ~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~ 403 (458)
.|.+|.+| ++++++++++++||.. ++++.+|+.+.+|..+. .+|.++. ++..
T Consensus 211 ~P~pR~gH--------------~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~-----~h~~ 271 (482)
T KOG0379|consen 211 APSPRYGH--------------AMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRS-----GHSL 271 (482)
T ss_pred CCCCCCCc--------------eEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcc-----eeee
Confidence 68899999 8999999999998744 68999999999999764 5666664 3556
Q ss_pred EEeCCEEEEEcCCCCCCC-CeeeEEEeecCCCCCCceEeecc----CCCceeeeEEE
Q 012701 404 RACGDRLIVIGGPKASGE-GFIELNSWVPSEGPPQWNLLARK----QSANFVYNCAV 455 (458)
Q Consensus 404 ~~~~~~lyv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~l~~~----p~~~~~~~~~v 455 (458)
+..+++++++||...... ...+ .|.++..+..|..+... |.+++.|..+.
T Consensus 272 ~~~~~~~~l~gG~~~~~~~~l~~--~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 326 (482)
T KOG0379|consen 272 TVSGDHLLLFGGGTDPKQEPLGD--LYGLDLETLVWSKVESVGVVRPSPRLGHAAEL 326 (482)
T ss_pred EEECCEEEEEcCCcccccccccc--cccccccccceeeeecccccccccccccccee
Confidence 689999999999866421 2333 45555557999988543 56666666554
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=8.5e-24 Score=217.92 Aligned_cols=275 Identities=21% Similarity=0.274 Sum_probs=210.0
Q ss_pred cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCC---CCCccccccCceEEEeCCEEEEEcCCCCCcCccc
Q 012701 142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRM---TSNECFMCSDKESLAVGTELLVFGRELTAHHISH 218 (458)
Q Consensus 142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~---p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 218 (458)
++++|++||....... ...+++.||..+..|.....- |.++ .++..++++++||+|||........+
T Consensus 70 ~~~~~vfGG~~~~~~~------~~~dl~~~d~~~~~w~~~~~~g~~p~~r----~g~~~~~~~~~l~lfGG~~~~~~~~~ 139 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRL------TDLDLYVLDLESQLWTKPAATGDEPSPR----YGHSLSAVGDKLYLFGGTDKKYRNLN 139 (482)
T ss_pred CCEEEEECCCCCCCcc------ccceeEEeecCCcccccccccCCCCCcc----cceeEEEECCeEEEEccccCCCCChh
Confidence 8999999998655410 112599999999999876533 3333 35667899999999999976555678
Q ss_pred eEEEEEcCCCceeeCC---CCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC---CCCCCCccee
Q 012701 219 VIYRYSILTNSWSSGM---RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKMCS 292 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~ 292 (458)
+++.||+.|++|+.+. .+|.+|.+|++++++++|||+||++.....++++++||+++.+|.++. ..|.||.+|+
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~ 219 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA 219 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence 9999999999998774 468899999999999999999999988778999999999999999874 6788999999
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcC---CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC
Q 012701 293 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 369 (458)
Q Consensus 293 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~ 369 (458)
+++++++++|+||.. .....+++++.+|+.+.+|..+. .+|.+|.++ ..++.+.+++++||.
T Consensus 220 ~~~~~~~~~v~gG~~-~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h--------------~~~~~~~~~~l~gG~ 284 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGD-DGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGH--------------SLTVSGDHLLLFGGG 284 (482)
T ss_pred EEEECCeEEEEeccc-cCCceecceEeeecccceeeeccccCCCCCCccee--------------eeEEECCEEEEEcCC
Confidence 999999999999987 45678999999999999999776 478999998 778899999999874
Q ss_pred C-------CeEEEEeCCCCceEEeccCC-CccCCCCcccEEEEEeC----CEEEEEcCCCCCCCCeeeEEE--eecCCCC
Q 012701 370 D-------MEVRKYDKERRLWFTIGRLP-ERANSMNGWGLAFRACG----DRLIVIGGPKASGEGFIELNS--WVPSEGP 435 (458)
Q Consensus 370 ~-------~~v~~yd~~~~~W~~v~~lp-~~~~~~~~~~~a~~~~~----~~lyv~GG~~~~~~~~~~~~~--~~~~~~~ 435 (458)
. .+++.||..++.|..+.... ...... ..++++... ..+.++||.........++.. .......
T Consensus 285 ~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (482)
T KOG0379|consen 285 TDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPR--LGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRK 362 (482)
T ss_pred cccccccccccccccccccceeeeecccccccccc--ccccceeeccCCccceeeecCccccccchhhcccccccccccC
Confidence 4 46899999999999997555 111111 123333222 234555664444433333333 3344455
Q ss_pred CCceEeec
Q 012701 436 PQWNLLAR 443 (458)
Q Consensus 436 ~~W~~l~~ 443 (458)
+.|...+.
T Consensus 363 ~~~~~~~~ 370 (482)
T KOG0379|consen 363 NEVQEPGT 370 (482)
T ss_pred Cccccccc
Confidence 67766653
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=9.1e-23 Score=194.05 Aligned_cols=224 Identities=20% Similarity=0.314 Sum_probs=172.1
Q ss_pred CCEEEEEcCCCCC---cCccceEEEEEcCCCceeeC--CCCCCCCceeeEEEeC-CEEEEEeccCCCC---C--ccCeEE
Q 012701 201 GTELLVFGRELTA---HHISHVIYRYSILTNSWSSG--MRMNAPRCLFGSASLG-EIAILAGGSDLEG---N--ILSSAE 269 (458)
Q Consensus 201 ~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~---~--~~~~v~ 269 (458)
.+.|++|||+..+ ....+++|+||+.+++|+.+ +.-|.||+.|.++++. +.+|++||--... + -..++|
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W 157 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW 157 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence 5689999997543 33678999999999999987 5568899999998885 8999999963221 1 146899
Q ss_pred EEeCCCCcEEEcC--CCCCCCcceeEEEECCEEEEEccccCC--CCcccceEEEEECCCCceEEcCC---CCCCCCCCCC
Q 012701 270 MYNSETQTWKVLP--SMKNPRKMCSGVFMDGKFYVIGGIGGS--DSKVLTCGEEYDLETETWTEIPN---MSPARGGAAR 342 (458)
Q Consensus 270 ~yd~~t~~W~~~~--~~p~~r~~~~~~~~~g~lyv~GG~~~~--~~~~~~~v~~yd~~~~~W~~i~~---~p~~r~~~~~ 342 (458)
+||+.+++|+++. .-|.+|++|.+++...+|++|||.... ...++|++++||+.+=+|+++.+ -|.+|+++
T Consensus 158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGc-- 235 (521)
T KOG1230|consen 158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGC-- 235 (521)
T ss_pred eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcc--
Confidence 9999999999985 568899999999999999999998632 24688999999999999999974 47889998
Q ss_pred CCCCCCCcCCCCEEEEE-CCEEEEEEcCC--------------CeEEEEeCCC-----CceEEeccCCCccCCCCcccEE
Q 012701 343 GTEMPASAEAPPLVAVV-NNELYAADYAD--------------MEVRKYDKER-----RLWFTIGRLPERANSMNGWGLA 402 (458)
Q Consensus 343 ~~~~~~~~~~~~~~~~~-~~~lyv~gg~~--------------~~v~~yd~~~-----~~W~~v~~lp~~~~~~~~~~~a 402 (458)
++++. +|.||+.||+. .++|.+++.. -.|..+.+......++.||+++
T Consensus 236 ------------q~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 236 ------------QFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred ------------eEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 77777 99999999854 5788999888 6799987553333333444443
Q ss_pred EEEeCCEEEEEcCCCCCC--------CCeeeEEEeecCCCCCCceEe
Q 012701 403 FRACGDRLIVIGGPKASG--------EGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 403 ~~~~~~~lyv~GG~~~~~--------~~~~~~~~~~~~~~~~~W~~l 441 (458)
++-+++-|.|||..... ....++ |.++...++|...
T Consensus 304 -va~n~kal~FGGV~D~eeeeEsl~g~F~NDL--y~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 304 -VAKNHKALFFGGVCDLEEEEESLSGEFFNDL--YFFDLTRNRWSEG 347 (521)
T ss_pred -EecCCceEEecceecccccchhhhhhhhhhh--hheecccchhhHh
Confidence 24566999999976522 112333 4444455899765
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=8.4e-23 Score=198.40 Aligned_cols=249 Identities=19% Similarity=0.269 Sum_probs=194.1
Q ss_pred HHHHhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeC---CCCCCCccccccCceEEEeCCEEEEEcCCCC
Q 012701 136 FRSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHL---PRMTSNECFMCSDKESLAVGTELLVFGRELT 212 (458)
Q Consensus 136 wr~lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l---~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~ 212 (458)
.|+++...-+.++||.+... ..++++||..++.|..- ..+|.+ |+.+..++.|++||+|||...
T Consensus 36 HRAVaikELiviFGGGNEGi---------iDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtrilvFGGMvE 102 (830)
T KOG4152|consen 36 HRAVAIKELIVIFGGGNEGI---------IDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTRILVFGGMVE 102 (830)
T ss_pred chheeeeeeEEEecCCcccc---------hhhhhhhccccceeecchhcCCCCCc----hhhcceEecCceEEEEccEee
Confidence 35566666677777765432 46789999999999742 233333 234556788999999999988
Q ss_pred CcCccceEEEEEcCCCceeeCC-------CCCCCCceeeEEEeCCEEEEEeccCCC--------CCccCeEEEEeCCCCc
Q 012701 213 AHHISHVIYRYSILTNSWSSGM-------RMNAPRCLFGSASLGEIAILAGGSDLE--------GNILSSAEMYNSETQT 277 (458)
Q Consensus 213 ~~~~~~~v~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~~ 277 (458)
.+..++++|......-.|+++. .+|.||.+|+...++++.|+|||..++ .++++++++.++.-+.
T Consensus 103 YGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gs 182 (830)
T KOG4152|consen 103 YGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGS 182 (830)
T ss_pred eccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCC
Confidence 7778899887777677787773 357899999999999999999997432 2478999999888654
Q ss_pred ----EEEc---CCCCCCCcceeEEEE------CCEEEEEccccCCCCcccceEEEEECCCCceEEcC---CCCCCCCCCC
Q 012701 278 ----WKVL---PSMKNPRKMCSGVFM------DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPARGGAA 341 (458)
Q Consensus 278 ----W~~~---~~~p~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~---~~p~~r~~~~ 341 (458)
|... ..+|.+|..|.++++ ..|+||+||.. ...+.++|..|+++..|.+.. ..|.+|+-|
T Consensus 183 gvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLH- 258 (830)
T KOG4152|consen 183 GVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLH- 258 (830)
T ss_pred ceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc---cccccceeEEecceeecccccccCCCCCCcccc-
Confidence 8764 468999999999977 34799999987 457889999999999999875 357788888
Q ss_pred CCCCCCCCcCCCCEEEEECCEEEEEEcC-------------------CCeEEEEeCCCCceEEec-------cCCCccCC
Q 012701 342 RGTEMPASAEAPPLVAVVNNELYAADYA-------------------DMEVRKYDKERRLWFTIG-------RLPERANS 395 (458)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~lyv~gg~-------------------~~~v~~yd~~~~~W~~v~-------~lp~~~~~ 395 (458)
+..+++|++|+|||. .+.+-.+|+++..|..+- ..|.++
T Consensus 259 -------------sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~R-- 323 (830)
T KOG4152|consen 259 -------------SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRAR-- 323 (830)
T ss_pred -------------cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccc--
Confidence 889999999999982 156788999999999872 244444
Q ss_pred CCcccEEEEEeCCEEEEEcCCCCC
Q 012701 396 MNGWGLAFRACGDRLIVIGGPKAS 419 (458)
Q Consensus 396 ~~~~~~a~~~~~~~lyv~GG~~~~ 419 (458)
.||.+++++.+||+..|.+.+
T Consensus 324 ---AGHCAvAigtRlYiWSGRDGY 344 (830)
T KOG4152|consen 324 ---AGHCAVAIGTRLYIWSGRDGY 344 (830)
T ss_pred ---ccceeEEeccEEEEEeccchh
Confidence 467788999999999998754
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.89 E-value=1.9e-22 Score=195.97 Aligned_cols=255 Identities=17% Similarity=0.217 Sum_probs=193.0
Q ss_pred CcEEeCC----CCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC---CCCCCCCceeeEEEe
Q 012701 176 RRWMHLP----RMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASL 248 (458)
Q Consensus 176 ~~W~~l~----~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~ 248 (458)
-+|.++. |.|.+|+. |.++++...|.||||-+.. ..+.+++||..||+|..- .+.|.+-..|+.+..
T Consensus 17 ~rWrrV~~~tGPvPrpRHG----HRAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHG----HRAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred cceEEEecccCCCCCcccc----chheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 3677663 55666654 4468999999999986543 677899999999999643 578888888999999
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC-------CCCCCCcceeEEEECCEEEEEccccCCC-------Cccc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP-------SMKNPRKMCSGVFMDGKFYVIGGIGGSD-------SKVL 314 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-------~~p~~r~~~~~~~~~g~lyv~GG~~~~~-------~~~~ 314 (458)
+.+||+|||..+.+.+.++++-+-...-.|+++. .+|.||-+|+..++++|-|+|||...+. ..++
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL 170 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL 170 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence 9999999999888888877765555555566663 4678999999999999999999976221 3578
Q ss_pred ceEEEEECCCCc----eEEcC---CCCCCCCCCCCCCCCCCCcCCCCEEEEE------CCEEEEEEcCC----CeEEEEe
Q 012701 315 TCGEEYDLETET----WTEIP---NMSPARGGAARGTEMPASAEAPPLVAVV------NNELYAADYAD----MEVRKYD 377 (458)
Q Consensus 315 ~~v~~yd~~~~~----W~~i~---~~p~~r~~~~~~~~~~~~~~~~~~~~~~------~~~lyv~gg~~----~~v~~yd 377 (458)
+++++.++.-+. |...- .+|.+|..| ..+++ .-++|++||.. +++|.+|
T Consensus 171 nDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESH--------------TAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ld 236 (830)
T KOG4152|consen 171 NDLYILELRPGSGVVAWDIPITYGVLPPPRESH--------------TAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLD 236 (830)
T ss_pred cceEEEEeccCCceEEEecccccCCCCCCcccc--------------eeEEEEeccCCcceEEEEcccccccccceeEEe
Confidence 999999887543 87653 588899888 55555 23799999865 7999999
Q ss_pred CCCCceEEec---cCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCC-------------CeeeEEEeecCCCCCCceEe
Q 012701 378 KERRLWFTIG---RLPERANSMNGWGLAFRACGDRLIVIGGPKASGE-------------GFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 378 ~~~~~W~~v~---~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~-------------~~~~~~~~~~~~~~~~W~~l 441 (458)
+++-.|.+.. -.|.++. -|++..+++++|||||..-.-. -+..+-+|+.+. ..|+.|
T Consensus 237 l~Tl~W~kp~~~G~~PlPRS-----LHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt--~~W~tl 309 (830)
T KOG4152|consen 237 LDTLTWNKPSLSGVAPLPRS-----LHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDT--MAWETL 309 (830)
T ss_pred cceeecccccccCCCCCCcc-----cccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecc--hheeee
Confidence 9999999863 2333333 1557789999999999763221 123445566655 899877
Q ss_pred -------eccCCCceeeeEEEee
Q 012701 442 -------ARKQSANFVYNCAVMG 457 (458)
Q Consensus 442 -------~~~p~~~~~~~~~v~g 457 (458)
...|.+|-.|+|+.+|
T Consensus 310 ~~d~~ed~tiPR~RAGHCAvAig 332 (830)
T KOG4152|consen 310 LMDTLEDNTIPRARAGHCAVAIG 332 (830)
T ss_pred eeccccccccccccccceeEEec
Confidence 2378999999999887
No 26
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=186.53 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=173.9
Q ss_pred CcEEEeecccCc-eeeEEEEEeccceEEEEecCCCcEEeC--CCCCCCccccccCceEEEe-CCEEEEEcCCCCCc----
Q 012701 143 GELYRLRRLNGV-IEHWVYFSCHLLEWEAFDPIRRRWMHL--PRMTSNECFMCSDKESLAV-GTELLVFGRELTAH---- 214 (458)
Q Consensus 143 ~~~y~~gg~~~~-~~~~l~~~~~~~~~~~yDp~~~~W~~l--~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~---- 214 (458)
++|+.+||..-. +..++ .++++.||...++|..+ |..|.||+.| .++++ .|.||+|||+....
T Consensus 79 eELilfGGEf~ngqkT~v-----YndLy~Yn~k~~eWkk~~spn~P~pRssh----q~va~~s~~l~~fGGEfaSPnq~q 149 (521)
T KOG1230|consen 79 EELILFGGEFYNGQKTHV-----YNDLYSYNTKKNEWKKVVSPNAPPPRSSH----QAVAVPSNILWLFGGEFASPNQEQ 149 (521)
T ss_pred ceeEEecceeecceeEEE-----eeeeeEEeccccceeEeccCCCcCCCccc----eeEEeccCeEEEeccccCCcchhh
Confidence 368888886432 23333 35899999999999876 5567777543 34555 58999999974321
Q ss_pred -CccceEEEEEcCCCceeeCC--CCCCCCceeeEEEeCCEEEEEeccCCC---CCccCeEEEEeCCCCcEEEcCC---CC
Q 012701 215 -HISHVIYRYSILTNSWSSGM--RMNAPRCLFGSASLGEIAILAGGSDLE---GNILSSAEMYNSETQTWKVLPS---MK 285 (458)
Q Consensus 215 -~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~---~p 285 (458)
....++|.||..|++|.++. .-|.||++|.+++...+|++|||+... ..+.+++++||+.|=+|..+.+ -|
T Consensus 150 F~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P 229 (521)
T KOG1230|consen 150 FHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP 229 (521)
T ss_pred hhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC
Confidence 14578999999999999884 468999999999999999999998433 3478999999999999999853 47
Q ss_pred CCCcceeEEEE-CCEEEEEccccCC-------CCcccceEEEEECCC-----CceEEcCC---CCCCCCCCCCCCCCCCC
Q 012701 286 NPRKMCSGVFM-DGKFYVIGGIGGS-------DSKVLTCGEEYDLET-----ETWTEIPN---MSPARGGAARGTEMPAS 349 (458)
Q Consensus 286 ~~r~~~~~~~~-~g~lyv~GG~~~~-------~~~~~~~v~~yd~~~-----~~W~~i~~---~p~~r~~~~~~~~~~~~ 349 (458)
.||++|...+. +|.|||.|||... .....++++..++.. -.|+.+.+ -|.+|++.
T Consensus 230 tpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf--------- 300 (521)
T KOG1230|consen 230 TPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF--------- 300 (521)
T ss_pred CCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce---------
Confidence 89999999887 9999999998621 234667899999988 56998875 57889988
Q ss_pred cCCCCEEEEE-CCEEEEEEcCC--------------CeEEEEeCCCCceEEe
Q 012701 350 AEAPPLVAVV-NNELYAADYAD--------------MEVRKYDKERRLWFTI 386 (458)
Q Consensus 350 ~~~~~~~~~~-~~~lyv~gg~~--------------~~v~~yd~~~~~W~~v 386 (458)
++++. +++-+.|||.- ++++.||...+.|...
T Consensus 301 -----sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 -----SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred -----eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 77776 56999999832 7899999999999765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=4.9e-17 Score=153.40 Aligned_cols=249 Identities=19% Similarity=0.267 Sum_probs=177.1
Q ss_pred cceEEEEecCC--CcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCC----cCccceEEEEEcCCCceeeCCC-CC
Q 012701 165 LLEWEAFDPIR--RRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTA----HHISHVIYRYSILTNSWSSGMR-MN 237 (458)
Q Consensus 165 ~~~~~~yDp~~--~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~----~~~~~~v~~yd~~t~~W~~~~~-~p 237 (458)
-..++..|... ..|+++...|..... +...++++++||||||.... ....+++|+|||.+|+|+++.. .|
T Consensus 57 G~afy~ldL~~~~k~W~~~a~FpG~~rn---qa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP 133 (381)
T COG3055 57 GTAFYVLDLKKPGKGWTKIADFPGGARN---QAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSP 133 (381)
T ss_pred CccceehhhhcCCCCceEcccCCCcccc---cchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccc
Confidence 34567677655 489999988876543 23457789999999987432 2356889999999999999864 36
Q ss_pred CCCceeeEEEeCC-EEEEEeccCCC---------------------------------CCccCeEEEEeCCCCcEEEcCC
Q 012701 238 APRCLFGSASLGE-IAILAGGSDLE---------------------------------GNILSSAEMYNSETQTWKVLPS 283 (458)
Q Consensus 238 ~~r~~~~~~~~~~-~lyv~GG~~~~---------------------------------~~~~~~v~~yd~~t~~W~~~~~ 283 (458)
..-..+.++.+++ +||++||.+.. ......+..|+|.++.|+.+..
T Consensus 134 ~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 134 TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence 6667788888877 99999998522 0135678899999999999997
Q ss_pred CCC-CCcceeEEEECCEEEEEccccCCCCcccceEEEEECC--CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC
Q 012701 284 MKN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE--TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 360 (458)
Q Consensus 284 ~p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (458)
.|. ++++.+.+.-++++.++-|.-. .......+.+++.. .-+|..++++|.+-+.. ....++...-..+
T Consensus 214 ~pf~~~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~-------~eGvAGaf~G~s~ 285 (381)
T COG3055 214 NPFYGNAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSN-------KEGVAGAFSGKSN 285 (381)
T ss_pred CcccCccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeeccCCCCCCCCC-------ccccceeccceeC
Confidence 775 4555444555777888877641 22233345566655 55799999888765443 0112222344568
Q ss_pred CEEEEEEcCC------------------------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 361 NELYAADYAD------------------------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 361 ~~lyv~gg~~------------------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
+.+.+.||.. .+|+.+| ++.|+.++.||.+.. +|. .+..++.||+|||.
T Consensus 286 ~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~----YG~-s~~~nn~vl~IGGE 358 (381)
T COG3055 286 GEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA----YGV-SLSYNNKVLLIGGE 358 (381)
T ss_pred CeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc----ceE-EEecCCcEEEEccc
Confidence 8888887632 5788888 999999999999664 444 45789999999999
Q ss_pred CCCCCCeeeEEEeec
Q 012701 417 KASGEGFIELNSWVP 431 (458)
Q Consensus 417 ~~~~~~~~~~~~~~~ 431 (458)
...+..+..+.....
T Consensus 359 ~~~Gka~~~v~~l~~ 373 (381)
T COG3055 359 TSGGKATTRVYSLSW 373 (381)
T ss_pred cCCCeeeeeEEEEEE
Confidence 988776666655443
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=1.2e-14 Score=137.43 Aligned_cols=193 Identities=21% Similarity=0.303 Sum_probs=156.7
Q ss_pred eeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC--CcEEEcCCCCC-CCcceeEEEECCEEEEEcccc
Q 012701 231 SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET--QTWKVLPSMKN-PRKMCSGVFMDGKFYVIGGIG 307 (458)
Q Consensus 231 ~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~-~r~~~~~~~~~g~lyv~GG~~ 307 (458)
..+|++|.+-..-+.+.+++.+||-=|..+ ...+..|++. ..|+.++..|. +|....+++++++|||+||..
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G-----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~G 102 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG-----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYG 102 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC-----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccc
Confidence 456888888877788889999999877543 3455666664 46999998774 577888889999999999987
Q ss_pred CCC---CcccceEEEEECCCCceEEcCC-CCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCC------------
Q 012701 308 GSD---SKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYAD------------ 370 (458)
Q Consensus 308 ~~~---~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~------------ 370 (458)
... ...++++++||+.+++|+++.. .|....++ ..+.+++ +||++||..
T Consensus 103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~--------------~~~~~~~~~i~f~GGvn~~if~~yf~dv~ 168 (381)
T COG3055 103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGA--------------STFSLNGTKIYFFGGVNQNIFNGYFEDVG 168 (381)
T ss_pred cCCCCCceEeeeeEEecCCCChhheeccccccccccc--------------eeEecCCceEEEEccccHHhhhhhHHhhh
Confidence 333 3567899999999999999985 45555565 6777777 999998732
Q ss_pred ---------------------------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCe
Q 012701 371 ---------------------------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGF 423 (458)
Q Consensus 371 ---------------------------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~ 423 (458)
..|+.||+.+++|+.++..|.... +|++++.-+++|.+|-|+..++-++
T Consensus 169 ~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~----aGsa~~~~~n~~~lInGEiKpGLRt 244 (381)
T COG3055 169 AAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN----AGSAVVIKGNKLTLINGEIKPGLRT 244 (381)
T ss_pred hhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCc----cCcceeecCCeEEEEcceecCCccc
Confidence 578999999999999998887654 4666666788899999999999999
Q ss_pred eeEEEeecCCCCCCceEeeccCC
Q 012701 424 IELNSWVPSEGPPQWNLLARKQS 446 (458)
Q Consensus 424 ~~~~~~~~~~~~~~W~~l~~~p~ 446 (458)
.++..++...+..+|..++++|.
T Consensus 245 ~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 245 AEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred cceeEEEeccCceeeeeccCCCC
Confidence 99999999888899999988873
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.22 E-value=2.8e-11 Score=84.66 Aligned_cols=50 Identities=36% Similarity=0.632 Sum_probs=46.5
Q ss_pred CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCC
Q 012701 239 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR 288 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 288 (458)
||..|++++++++|||+||.......++++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68899999999999999999875567899999999999999999999987
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.12 E-value=1.6e-10 Score=80.75 Aligned_cols=50 Identities=44% Similarity=0.698 Sum_probs=45.3
Q ss_pred CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCC
Q 012701 287 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPAR 337 (458)
Q Consensus 287 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r 337 (458)
+|..+++++++++|||+||.... ....+++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 58899999999999999999843 567889999999999999999999886
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.01 E-value=2.1e-10 Score=112.55 Aligned_cols=177 Identities=17% Similarity=0.180 Sum_probs=127.9
Q ss_pred CCCceeeCCCC----------CCCCceeeEEEeCC--EEEEEeccCCCCCccCeEEEEeCCCCcEEEcC---CCCCCCcc
Q 012701 226 LTNSWSSGMRM----------NAPRCLFGSASLGE--IAILAGGSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKM 290 (458)
Q Consensus 226 ~t~~W~~~~~~----------p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~ 290 (458)
.+-.|.++++. |..|.+|.++...+ .||+.||+++.. .+.+.|.|+...+.|..+. ..|..|..
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 45678776532 45699999999865 999999999874 5889999999999999875 47888999
Q ss_pred eeEEEEC--CEEEEEccccCCC----CcccceEEEEECCCCceEEcCCC------CCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 291 CSGVFMD--GKFYVIGGIGGSD----SKVLTCGEEYDLETETWTEIPNM------SPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 291 ~~~~~~~--g~lyv~GG~~~~~----~~~~~~v~~yd~~~~~W~~i~~~------p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
|.+|..- .|||++|-+-+.. .....++|+||..++.|..+.-- |.....+ ..+|
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDH--------------qM~V 381 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDH--------------QMCV 381 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecc--------------eeeE
Confidence 9998764 4999999764322 23446799999999999987521 2222333 5677
Q ss_pred ECCE--EEEEEcCC--------CeEEEEeCCCCceEEeccCCC-------ccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 359 VNNE--LYAADYAD--------MEVRKYDKERRLWFTIGRLPE-------RANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 359 ~~~~--lyv~gg~~--------~~v~~yd~~~~~W~~v~~lp~-------~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
.+.+ ||++||.. ..++.||.....|..+..--. ...++-+..+-++.-++.+|++||..
T Consensus 382 d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 382 DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred ecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 7766 99999843 568999999999987642111 11111122344555678999999864
No 32
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.00 E-value=4.1e-10 Score=77.57 Aligned_cols=47 Identities=34% Similarity=0.584 Sum_probs=43.4
Q ss_pred CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC
Q 012701 239 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK 285 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (458)
||..|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999986678999999999999999999886
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.88 E-value=2.7e-09 Score=73.48 Aligned_cols=47 Identities=43% Similarity=0.748 Sum_probs=42.3
Q ss_pred CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCC
Q 012701 287 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 334 (458)
Q Consensus 287 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 334 (458)
||..+++++++++|||+||... .....+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999985 4678899999999999999999876
No 34
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.85 E-value=2.7e-09 Score=104.97 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=117.3
Q ss_pred cCCCcEEeCCCCCC------CccccccCceEEEeC--CEEEEEcCCCCCcCccceEEEEEcCCCceeeC---CCCCCCCc
Q 012701 173 PIRRRWMHLPRMTS------NECFMCSDKESLAVG--TELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRC 241 (458)
Q Consensus 173 p~~~~W~~l~~~p~------~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~ 241 (458)
+.+-+|.++++... .+....++|..+.-. +.||+.||.++.. ...++|.|+...+.|..+ ...|..|.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 45568888765431 111222355555543 4899999986553 677899999999999877 45788899
Q ss_pred eeeEEEeCC--EEEEEeccCCCC-----CccCeEEEEeCCCCcEEEcCC------CCCCCcceeEEEECCE--EEEEccc
Q 012701 242 LFGSASLGE--IAILAGGSDLEG-----NILSSAEMYNSETQTWKVLPS------MKNPRKMCSGVFMDGK--FYVIGGI 306 (458)
Q Consensus 242 ~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~------~p~~r~~~~~~~~~g~--lyv~GG~ 306 (458)
.|.+++.-. +||++|-+-+.. ....++|+||..++.|..+.. -|...+.|.+++..++ |||+||.
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 999998865 999999874332 235789999999999998752 2556678888888887 9999998
Q ss_pred cCCCC-cccceEEEEECCCCceEEcC
Q 012701 307 GGSDS-KVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 307 ~~~~~-~~~~~v~~yd~~~~~W~~i~ 331 (458)
.-... .....++.||.....|..+.
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHH
Confidence 63322 45667999999999998765
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.84 E-value=8.3e-09 Score=71.69 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=42.8
Q ss_pred CCEEEEEcCCC-CCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe
Q 012701 201 GTELLVFGREL-TAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL 248 (458)
Q Consensus 201 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 248 (458)
|++||||||.. ......+++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57899999997 3456789999999999999999999999999999864
No 36
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.81 E-value=2.1e-06 Score=80.42 Aligned_cols=198 Identities=10% Similarity=0.063 Sum_probs=115.5
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCce-----eeEEEe---C-CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC-
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCL-----FGSASL---G-EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP- 287 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~-----~~~~~~---~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~- 287 (458)
..++++||.|++|+.+|+.+.++.. ++.... + -+|..+...... .....+++|++.+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 4689999999999999865543111 111111 1 255555443211 1245789999999999998743322
Q ss_pred CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEE-cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEE
Q 012701 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAA 366 (458)
Q Consensus 288 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~ 366 (458)
.....++.++|.||.+...... .....|..||+.+.+|.+ ++ +|...... .....++.++|+|.++
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~----------~~~~~L~~~~G~L~~v 159 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIP-LPCGNSDS----------VDYLSLINYKGKLAVL 159 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC--CCcEEEEEEEcccceEeeeee-cCcccccc----------ccceEEEEECCEEEEE
Confidence 1122378899999999754311 111269999999999996 54 34332210 0012678889999998
Q ss_pred EcCC----CeEEEEe-CCCCceEEeccCCC--ccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 367 DYAD----MEVRKYD-KERRLWFTIGRLPE--RANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 367 gg~~----~~v~~yd-~~~~~W~~v~~lp~--~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.... -+||+.+ ...+.|++.-.++. ............+..+++|++.... .. ...+..|++.+
T Consensus 160 ~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~---~~~~~~y~~~~ 229 (230)
T TIGR01640 160 KQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN---PFYIFYYNVGE 229 (230)
T ss_pred EecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC---ceEEEEEeccC
Confidence 6532 3677775 44667988644432 1110010123345567888877653 11 11356676643
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.80 E-value=1.2e-08 Score=70.87 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=43.1
Q ss_pred CCEEEEEeccC-CCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 249 GEIAILAGGSD-LEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 249 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
+++|||+||.+ .....++++++||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 4456789999999999999999999999999998863
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=6.7e-09 Score=72.18 Aligned_cols=48 Identities=33% Similarity=0.554 Sum_probs=32.3
Q ss_pred CCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCC
Q 012701 239 PRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN 286 (458)
Q Consensus 239 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 286 (458)
||..|+++.+ +++|||+||.+..+..++++++||+.+++|+++++||.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999998 58999999998876789999999999999999988873
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=2.1e-08 Score=69.67 Aligned_cols=48 Identities=38% Similarity=0.574 Sum_probs=41.9
Q ss_pred CCcceeEEEECCEEEEEccc-cCCCCcccceEEEEECCCCceEEcCCCC
Q 012701 287 PRKMCSGVFMDGKFYVIGGI-GGSDSKVLTCGEEYDLETETWTEIPNMS 334 (458)
Q Consensus 287 ~r~~~~~~~~~g~lyv~GG~-~~~~~~~~~~v~~yd~~~~~W~~i~~~p 334 (458)
+|..|++++++++|||+||+ ........+++++||+++++|+++++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 58899999999999999999 3345667889999999999999998765
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=2.1e-08 Score=69.65 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=41.9
Q ss_pred CCceeeEEEeCCEEEEEecc--CCCCCccCeEEEEeCCCCcEEEcCCCC
Q 012701 239 PRCLFGSASLGEIAILAGGS--DLEGNILSSAEMYNSETQTWKVLPSMK 285 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~p 285 (458)
||..|++++++++|||+||. +......+++++||+++++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68899999999999999999 444567899999999999999998875
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.67 E-value=3.2e-08 Score=68.69 Aligned_cols=48 Identities=38% Similarity=0.595 Sum_probs=31.3
Q ss_pred CCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC
Q 012701 287 PRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335 (458)
Q Consensus 287 ~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~ 335 (458)
||..|+++.+ +++|||+||... +...++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-SGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCC-CCcccCCEEEEECCCCEEEECCCCCC
Confidence 6889999988 699999999983 34688999999999999999988773
No 42
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=98.67 E-value=4.7e-06 Score=82.14 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=34.8
Q ss_pred CCCCCChhHHHHhhcccC-cccchhhhhccHhHHHHhcc
Q 012701 105 LIQPIGRDNSISCLIRCS-RSDYGSIASLNQSFRSLIRS 142 (458)
Q Consensus 105 l~~~LP~dl~~~iL~rlp-~~~~~~l~~Vck~wr~lv~s 142 (458)
.|..||+||+..|..||| +.++.++|+||++||+.+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 488999999999999996 78999999999999998774
No 43
>smart00612 Kelch Kelch domain.
Probab=98.65 E-value=5e-08 Score=66.76 Aligned_cols=47 Identities=36% Similarity=0.583 Sum_probs=41.5
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG 298 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (458)
+||++||.+.. ..++++++||+.+++|+.+++||.+|..++++.++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998753 457899999999999999999999999999888765
No 44
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.64 E-value=1.3e-05 Score=75.08 Aligned_cols=202 Identities=11% Similarity=0.029 Sum_probs=116.0
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC-----CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG-----TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP- 239 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-----~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~- 239 (458)
..+..+||.|++|..+|+.+.++.........+..+ -+|..+...... .....+.+|+..+++|+.+...+..
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccCCCCc
Confidence 467889999999999987654321111101112222 255555432111 1335689999999999998743321
Q ss_pred CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cCCCCCCCc----ceeEEEECCEEEEEccccCCCCccc
Q 012701 240 RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPRK----MCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 240 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~----~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
......+.+++.||-+.-.... .....+..||..+.+|.. ++ +|..+. ....+.++|+|.++...... ..
T Consensus 93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~---~~ 167 (230)
T TIGR01640 93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDT---NN 167 (230)
T ss_pred cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCC---Cc
Confidence 1122367789999988754321 111379999999999995 54 343322 34566788999988654311 11
Q ss_pred ceEEEEE-CCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC--CCeEEEEeCCCC
Q 012701 315 TCGEEYD-LETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVVNNELYAADYA--DMEVRKYDKERR 381 (458)
Q Consensus 315 ~~v~~yd-~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~--~~~v~~yd~~~~ 381 (458)
-.||+.+ -....|+++-.++.+ .... .. ...+..+..+|+|++.... ...+..||+.++
T Consensus 168 ~~IWvl~d~~~~~W~k~~~i~~~~~~~~------~~--~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 168 FDLWVLNDAGKQEWSKLFTVPIPPLPDL------VD--DNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEECCCCCCceeEEEEEcCcchhhh------hh--heeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 3566664 335679875433321 0000 00 0012345668888887653 223899998875
No 45
>smart00612 Kelch Kelch domain.
Probab=98.56 E-value=1e-07 Score=65.23 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=40.6
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCC
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE 250 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~ 250 (458)
+|||+||.... ...+++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998542 357889999999999999999999999999888764
No 46
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.47 E-value=4e-06 Score=78.23 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=97.3
Q ss_pred EEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC----CcEEEcC-CCCCCCcceeEE
Q 012701 220 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET----QTWKVLP-SMKNPRKMCSGV 294 (458)
Q Consensus 220 v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~~~~~~ 294 (458)
-.+||+.|++++.+...-..-|...+..-++++.++||.... ...+..|++.+ ..|...+ .|..+|-..++.
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 357999999999876544444444444458899999997542 35677888876 5798876 588888888777
Q ss_pred EE-CCEEEEEccccCCCCcccceEEEEECCCC--ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCC
Q 012701 295 FM-DGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADM 371 (458)
Q Consensus 295 ~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~ 371 (458)
.+ ||+++|+||... ...+.|..... ....++-+....... ..+ ..|.....-+|+||+++. .
T Consensus 125 ~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~--~~n-----lYP~~~llPdG~lFi~an--~ 189 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTL--PNN-----LYPFVHLLPDGNLFIFAN--R 189 (243)
T ss_pred ECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccC--ccc-----cCceEEEcCCCCEEEEEc--C
Confidence 55 999999999862 12232332111 111111111100000 000 112234445999999976 4
Q ss_pred eEEEEeCCCCce-EEeccCCCc
Q 012701 372 EVRKYDKERRLW-FTIGRLPER 392 (458)
Q Consensus 372 ~v~~yd~~~~~W-~~v~~lp~~ 392 (458)
.-.+||..++++ +.++.+|..
T Consensus 190 ~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred CcEEEeCCCCeEEeeCCCCCCC
Confidence 567889999987 788888874
No 47
>PLN02772 guanylate kinase
Probab=98.36 E-value=3e-06 Score=83.84 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=68.0
Q ss_pred CCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc---CCCCCCCcceeEEEE-CCEEEEEccccCCCCcc
Q 012701 238 APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL---PSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 238 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~ 313 (458)
.|+..++++.+++++||+||.+..+...+.+++||..|++|... +..|.+|.+|+++++ +++|+|+++....
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC----
Confidence 47888999999999999999877655678999999999999875 478999999999988 7899999875422
Q ss_pred cceEEEEECCC
Q 012701 314 LTCGEEYDLET 324 (458)
Q Consensus 314 ~~~v~~yd~~~ 324 (458)
-.++|.....|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 25667666554
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.31 E-value=1.1e-05 Score=75.33 Aligned_cols=147 Identities=20% Similarity=0.337 Sum_probs=98.4
Q ss_pred EEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCC----CceeeCC-CCCCCCcee
Q 012701 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILT----NSWSSGM-RMNAPRCLF 243 (458)
Q Consensus 169 ~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~-~~p~~r~~~ 243 (458)
..||+.+++++.+...... +|+.+. +.-+|.+++.||... ....+-.|++.+ ..|.+.+ .|..+|.+.
T Consensus 49 ~~yD~~tn~~rpl~v~td~---FCSgg~-~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp 121 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDT---FCSGGA-FLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP 121 (243)
T ss_pred EEEecCCCcEEeccCCCCC---cccCcC-CCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccc
Confidence 4699999999988754443 444443 334789999999854 234566788865 6798875 589999999
Q ss_pred eEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC-----cEEEcCC----CCCCCcceeEEEECCEEEEEccccCCCCcc
Q 012701 244 GSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ-----TWKVLPS----MKNPRKMCSGVFMDGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 244 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~----~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~ 313 (458)
++..+ +++++|+||... ...|.+..... .|..+.. .+...+-+..+.-+|+||+++...
T Consensus 122 T~~~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~------ 190 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG------ 190 (243)
T ss_pred cceECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC------
Confidence 88888 779999999872 23444444221 1222221 122222233345599999997643
Q ss_pred cceEEEEECCCCce-EEcCCCCCC
Q 012701 314 LTCGEEYDLETETW-TEIPNMSPA 336 (458)
Q Consensus 314 ~~~v~~yd~~~~~W-~~i~~~p~~ 336 (458)
...||..++++ +.++.+|..
T Consensus 191 ---s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 191 ---SIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ---cEEEeCCCCeEEeeCCCCCCC
Confidence 46799999987 788888764
No 49
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.28 E-value=2.8e-07 Score=63.30 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=35.8
Q ss_pred CCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEE
Q 012701 106 IQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 146 (458)
Q Consensus 106 ~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y 146 (458)
|..||+|++..||.+|+..++.+++.|||+|+.++.++.+|
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 57899999999999999999999999999999999877544
No 50
>PF13854 Kelch_5: Kelch motif
Probab=98.27 E-value=2.5e-06 Score=57.00 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=36.4
Q ss_pred CCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 284 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 284 ~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
+|.+|..|++++++++|||+||..+......+++++||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999854567889999999976
No 51
>PLN02772 guanylate kinase
Probab=98.25 E-value=6.2e-06 Score=81.66 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=64.9
Q ss_pred CceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC---CCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEE
Q 012701 194 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG---MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAE 269 (458)
Q Consensus 194 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 269 (458)
.++++++++++||+||.+.....++.+++||..|++|... ...|.||.+|+++++ +++|+|+++..... +++|
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~---~~~w 103 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD---DSIW 103 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc---cceE
Confidence 3567899999999999876555788999999999999765 467899999999998 57999998765442 6777
Q ss_pred EEeCCCC
Q 012701 270 MYNSETQ 276 (458)
Q Consensus 270 ~yd~~t~ 276 (458)
.+...|.
T Consensus 104 ~l~~~t~ 110 (398)
T PLN02772 104 FLEVDTP 110 (398)
T ss_pred EEEcCCH
Confidence 7776653
No 52
>PF13854 Kelch_5: Kelch motif
Probab=98.20 E-value=3.7e-06 Score=56.16 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCCCCceeeEEEeCCEEEEEeccCC-CCCccCeEEEEeCCCC
Q 012701 236 MNAPRCLFGSASLGEIAILAGGSDL-EGNILSSAEMYNSETQ 276 (458)
Q Consensus 236 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~ 276 (458)
+|.+|..|+++.++++|||+||.+. .....+++++||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4789999999999999999999994 5667899999998763
No 53
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.97 E-value=0.01 Score=60.18 Aligned_cols=227 Identities=12% Similarity=0.095 Sum_probs=124.3
Q ss_pred cceEEEEecCCC--cEEeCCCCCCCccc----cccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCC--ceeeCCCC
Q 012701 165 LLEWEAFDPIRR--RWMHLPRMTSNECF----MCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN--SWSSGMRM 236 (458)
Q Consensus 165 ~~~~~~yDp~~~--~W~~l~~~p~~~~~----~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~ 236 (458)
...+.+||..++ .|..-..-...... .......+..++.||+.+ ....++.+|..|+ .|+.-..
T Consensus 78 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-------~~g~l~ald~~tG~~~W~~~~~- 149 (394)
T PRK11138 78 AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-------EKGQVYALNAEDGEVAWQTKVA- 149 (394)
T ss_pred CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-------CCCEEEEEECCCCCCcccccCC-
Confidence 345778888766 57642211100000 000122456688888754 3346899999886 4865321
Q ss_pred CCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCC--CcceeEEEECCEEEEEccccCCCCc
Q 012701 237 NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNP--RKMCSGVFMDGKFYVIGGIGGSDSK 312 (458)
Q Consensus 237 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--r~~~~~~~~~g~lyv~GG~~~~~~~ 312 (458)
.+ ...+-++.++.+|+..+ ...++.+|+.+++ |+.-...|.. +...+-++.++.+|+..+.
T Consensus 150 -~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------ 214 (394)
T PRK11138 150 -GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------ 214 (394)
T ss_pred -Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------
Confidence 11 11223455788887532 2468999999886 8875433221 2223445667887775432
Q ss_pred ccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEecc
Q 012701 313 VLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTIGR 388 (458)
Q Consensus 313 ~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~ 388 (458)
..+..+|+.+.+ |+.-...|...... .+........++.++.+|+.+ ..+.++.+|+.+++ |+.-
T Consensus 215 --g~v~a~d~~~G~~~W~~~~~~~~~~~~~------~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 215 --GRVSAVLMEQGQLIWQQRISQPTGATEI------DRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred --CEEEEEEccCChhhheeccccCCCccch------hcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCCEEEeec--
Confidence 246778887764 86422112110000 000000013456789999876 45789999998864 8652
Q ss_pred CCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 389 LPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 389 lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
+... ...++.+++||+.... ..+.+++...+...|+.
T Consensus 284 ~~~~--------~~~~~~~~~vy~~~~~-------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 284 YGSV--------NDFAVDGGRIYLVDQN-------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred CCCc--------cCcEEECCEEEEEcCC-------CeEEEEECCCCcEEEcc
Confidence 1111 1234578899987632 24666666665566753
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.93 E-value=0.013 Score=59.42 Aligned_cols=220 Identities=16% Similarity=0.128 Sum_probs=126.6
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeC
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSG 233 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 233 (458)
.+|+......++++|..++ .|..-.+ ... ..+.+..++.||+..+ ...++.+|+.|++ |+.-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~-----~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA--GEA-----LSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVN 187 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC--Cce-----ecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeec
Confidence 3444444456889999886 6764321 111 1122556788887542 3469999999875 8764
Q ss_pred CCCCC--CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCC--------CcceeEEEECCEEE
Q 012701 234 MRMNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNP--------RKMCSGVFMDGKFY 301 (458)
Q Consensus 234 ~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~g~ly 301 (458)
...+. .+...+-++.++.+|+..+ + ..+..+|+.+++ |+.-...|.. ....+-++.++.+|
T Consensus 188 ~~~~~~~~~~~~sP~v~~~~v~~~~~-~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy 260 (394)
T PRK11138 188 LDVPSLTLRGESAPATAFGGAIVGGD-N------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVY 260 (394)
T ss_pred CCCCcccccCCCCCEEECCEEEEEcC-C------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEE
Confidence 33221 1222233445677766533 1 457788888875 8753222211 11234456799999
Q ss_pred EEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCC
Q 012701 302 VIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 302 v~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~ 379 (458)
+.+.. ..++++|+.+.+ |+.- ... .. ..++.++.||+.. ..+.++.+|..
T Consensus 261 ~~~~~--------g~l~ald~~tG~~~W~~~--~~~---~~--------------~~~~~~~~vy~~~-~~g~l~ald~~ 312 (394)
T PRK11138 261 ALAYN--------GNLVALDLRSGQIVWKRE--YGS---VN--------------DFAVDGGRIYLVD-QNDRVYALDTR 312 (394)
T ss_pred EEEcC--------CeEEEEECCCCCEEEeec--CCC---cc--------------CcEEECCEEEEEc-CCCeEEEEECC
Confidence 86431 357889998765 8652 111 01 2466789999875 45789999998
Q ss_pred CCc--eEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 380 RRL--WFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 380 ~~~--W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
+.+ |+.-. +.... + .+.++.+++||+.... ..+.+++.+.+...|+.
T Consensus 313 tG~~~W~~~~-~~~~~-----~-~sp~v~~g~l~v~~~~-------G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 313 GGVELWSQSD-LLHRL-----L-TAPVLYNGYLVVGDSE-------GYLHWINREDGRFVAQQ 361 (394)
T ss_pred CCcEEEcccc-cCCCc-----c-cCCEEECCEEEEEeCC-------CEEEEEECCCCCEEEEE
Confidence 764 75421 11111 1 2234568888876431 14566666666566754
No 55
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.90 E-value=3.8e-06 Score=55.60 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=36.2
Q ss_pred CChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEE
Q 012701 109 IGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYR 147 (458)
Q Consensus 109 LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~ 147 (458)
||+|++..|+.+|+..++.+++.|||+|+.++..+.++.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999887653
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.90 E-value=0.013 Score=54.55 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=123.7
Q ss_pred eEEEEecCCC--cEEeCCCCCCCccccccCce--EEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCC
Q 012701 167 EWEAFDPIRR--RWMHLPRMTSNECFMCSDKE--SLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPR 240 (458)
Q Consensus 167 ~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~--~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r 240 (458)
.+.++|+.++ .|..- +..... ... .+..++.+|+.. ....++++|+.|++ |+.-. +.+-
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~----~~~~~~~~~~~~v~~~~-------~~~~l~~~d~~tG~~~W~~~~--~~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIG----GPVATAVPDGGRVYVAS-------GDGNLYALDAKTGKVLWRFDL--PGPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCS----SEEETEEEETTEEEEEE-------TTSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred EEEEEECCCCCEEEEEE--CCCCCC----CccceEEEeCCEEEEEc-------CCCEEEEEECCCCCEEEEeec--cccc
Confidence 4677888776 46552 111110 111 234688999884 34579999998875 65533 2221
Q ss_pred ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EE-EcCCCCCC--CcceeEEEECCEEEEEccccCCCCcccc
Q 012701 241 CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WK-VLPSMKNP--RKMCSGVFMDGKFYVIGGIGGSDSKVLT 315 (458)
Q Consensus 241 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~-~~~~~p~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~~ 315 (458)
. ......++.+|+..+ -..+..+|..+++ |+ .....+.. ......++.++.+|+... ..
T Consensus 69 ~-~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g 132 (238)
T PF13360_consen 69 S-GAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS--------SG 132 (238)
T ss_dssp G-SGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET--------CS
T ss_pred c-ceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec--------cC
Confidence 1 124677889988862 1379999988885 98 44332322 233344455777777643 23
Q ss_pred eEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEeccCCC
Q 012701 316 CGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTIGRLPE 391 (458)
Q Consensus 316 ~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~lp~ 391 (458)
.+..+|+++++ |..-...+...... . .........+..++.+|+..+... +..+|..+++ |+.. +..
T Consensus 133 ~l~~~d~~tG~~~w~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~w~~~--~~~ 203 (238)
T PF13360_consen 133 KLVALDPKTGKLLWKYPVGEPRGSSPI----S--SFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGEKLWSKP--ISG 203 (238)
T ss_dssp EEEEEETTTTEEEEEEESSTT-SS--E----E--EETTEEEEEECCTTEEEEECCTSS-EEEEETTTTEEEEEEC--SS-
T ss_pred cEEEEecCCCcEEEEeecCCCCCCcce----e--eecccccceEEECCEEEEEcCCCe-EEEEECCCCCEEEEec--CCC
Confidence 68899998775 76633333211100 0 000000023334678888865444 5666999987 7332 222
Q ss_pred ccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 392 RANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
. .......++.||+.. .. ..+.+++...+...|+.
T Consensus 204 -~------~~~~~~~~~~l~~~~-~~------~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 204 -I------YSLPSVDGGTLYVTS-SD------GRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp -E------CECEECCCTEEEEEE-TT------TEEEEEETTTTEEEEEE
T ss_pred -c------cCCceeeCCEEEEEe-CC------CEEEEEECCCCCEEeEC
Confidence 1 122445677888877 21 26788888887778864
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.79 E-value=0.036 Score=55.80 Aligned_cols=226 Identities=16% Similarity=0.120 Sum_probs=121.7
Q ss_pred EEEEeccceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCC
Q 012701 159 VYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGM 234 (458)
Q Consensus 159 l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 234 (458)
+|+......+++||+.++ .|..--.-. . ....++.++.+|+.+ ....++.+|+.|++ |+.-.
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~-----~~~p~v~~~~v~v~~-------~~g~l~ald~~tG~~~W~~~~ 133 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLDER--L-----SGGVGADGGLVFVGT-------EKGEVIALDAEDGKELWRAKL 133 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCCCC--c-----ccceEEcCCEEEEEc-------CCCEEEEEECCCCcEeeeecc
Confidence 333333346888998876 475422211 1 112344577777654 23578999998764 86532
Q ss_pred CCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCC--CCcceeEEEECCEEEEEccccCCC
Q 012701 235 RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKN--PRKMCSGVFMDGKFYVIGGIGGSD 310 (458)
Q Consensus 235 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~lyv~GG~~~~~ 310 (458)
. .. .....+..++.+|+..+ ...+..+|+.+++ |+.-...+. .+...+.++.++.+|+ |...
T Consensus 134 ~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~--- 199 (377)
T TIGR03300 134 S--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG--- 199 (377)
T ss_pred C--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC---
Confidence 1 11 11223445777777532 2458899998875 875432221 1223344566776654 3221
Q ss_pred CcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEe
Q 012701 311 SKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTI 386 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v 386 (458)
..+..+|+.+.+ |+.-...+...... ..+. ......++.++.||+.. ..+.++.||.++++ |+.-
T Consensus 200 ----g~v~ald~~tG~~~W~~~~~~~~g~~~~---~~~~---~~~~~p~~~~~~vy~~~-~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 200 ----GKLVALDLQTGQPLWEQRVALPKGRTEL---ERLV---DVDGDPVVDGGQVYAVS-YQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred ----CEEEEEEccCCCEeeeeccccCCCCCch---hhhh---ccCCccEEECCEEEEEE-cCCEEEEEECCCCcEEEeec
Confidence 257889987764 76422212111100 0000 00013355688888865 45689999998764 7543
Q ss_pred ccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 387 GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 387 ~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
.+. . ...+..+++||+.... ..+.+++...+...|+.
T Consensus 269 --~~~--~------~~p~~~~~~vyv~~~~-------G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 269 --ASS--Y------QGPAVDDNRLYVTDAD-------GVVVALDRRSGSELWKN 305 (377)
T ss_pred --cCC--c------cCceEeCCEEEEECCC-------CeEEEEECCCCcEEEcc
Confidence 111 1 2234568888887531 24667777666667765
No 58
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.009 Score=55.64 Aligned_cols=179 Identities=21% Similarity=0.227 Sum_probs=109.0
Q ss_pred EEEEEeccceEEEEecCCCc--EEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--ee-e
Q 012701 158 WVYFSCHLLEWEAFDPIRRR--WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WS-S 232 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~-~ 232 (458)
.+|+......+.++|+.+++ |..-. +.+.. ...+..++.||+... .+.++.+|..|++ |+ .
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~-----~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDL--PGPIS-----GAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEEC--SSCGG-----SGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeec--ccccc-----ceeeecccccccccc-------eeeeEecccCCcceeeeec
Confidence 45555556788999998874 55433 22211 113677889988862 2379999988874 88 3
Q ss_pred CCCCCCC--CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCCc--------ceeEEEECCEE
Q 012701 233 GMRMNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRK--------MCSGVFMDGKF 300 (458)
Q Consensus 233 ~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~--------~~~~~~~~g~l 300 (458)
....+.. ......++.++.+|+... ...+..+|+.+++ |+.-...+.... ....+..++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 176 (238)
T PF13360_consen 104 LTSSPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRV 176 (238)
T ss_dssp E-SSCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEE
T ss_pred cccccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEE
Confidence 4332322 233344445777777743 3578999999885 876444433221 12333456888
Q ss_pred EEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeC
Q 012701 301 YVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDK 378 (458)
Q Consensus 301 yv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~ 378 (458)
|+..+.. .+..+|..+++ |+.. +.. ... .....++.||+.. ..+.+..+|+
T Consensus 177 ~~~~~~g--------~~~~~d~~tg~~~w~~~--~~~-~~~---------------~~~~~~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 177 YVSSGDG--------RVVAVDLATGEKLWSKP--ISG-IYS---------------LPSVDGGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp EEECCTS--------SEEEEETTTTEEEEEEC--SS--ECE---------------CEECCCTEEEEEE-TTTEEEEEET
T ss_pred EEEcCCC--------eEEEEECCCCCEEEEec--CCC-ccC---------------CceeeCCEEEEEe-CCCEEEEEEC
Confidence 8886543 14556999987 8432 111 111 2455677888887 7789999999
Q ss_pred CCCc--eE
Q 012701 379 ERRL--WF 384 (458)
Q Consensus 379 ~~~~--W~ 384 (458)
.+++ |+
T Consensus 230 ~tG~~~W~ 237 (238)
T PF13360_consen 230 KTGKVVWQ 237 (238)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEeE
Confidence 9875 65
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.77 E-value=0.00025 Score=67.57 Aligned_cols=43 Identities=9% Similarity=0.172 Sum_probs=39.6
Q ss_pred CCCCCCC----hhHHHHhhcccCcccchhhhhccHhHHHHhccCcEE
Q 012701 104 SLIQPIG----RDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 146 (458)
Q Consensus 104 ~l~~~LP----~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y 146 (458)
..|..|| ++++++||+.|...++.....|||+|+.++..+-++
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~W 119 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLW 119 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHH
Confidence 4677899 999999999999999999999999999999988776
No 60
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.71 E-value=3.4e-06 Score=58.09 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=33.9
Q ss_pred CCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcE
Q 012701 106 IQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGEL 145 (458)
Q Consensus 106 ~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~ 145 (458)
|..||+|++.+||.+|+..++.+++.|||+|+.++.+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence 5679999999999999999999999999999999987654
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.71 E-value=0.03 Score=56.32 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=111.8
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeC
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSG 233 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 233 (458)
.+|+......+.++|+.++ .|..-...+... .......+..++.+|+ |. ....++.+|+.+++ |+.-
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~--~~~~~sp~~~~~~v~~-~~------~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALT--LRGSASPVIADGGVLV-GF------AGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCcee--ecCCCCCEEECCEEEE-EC------CCCEEEEEEccCCCEeeeec
Confidence 3455444567899999876 476432221100 0001122455665554 32 22468899998864 7643
Q ss_pred CCCCCCC--------ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCCcceeEEEECCEEEEE
Q 012701 234 MRMNAPR--------CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFMDGKFYVI 303 (458)
Q Consensus 234 ~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~lyv~ 303 (458)
...+... .....+..++.+|+... ...+..||+.+++ |+.-. ......++.+++||+.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv~ 285 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYVT 285 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc-----CCccCceEeCCEEEEE
Confidence 2222111 11223445788888643 2468899998875 86531 1122345678999987
Q ss_pred ccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC
Q 012701 304 GGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 304 GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
... ..++++|..+.+ |+.-. +... ... ..++.++.||+.+ ..+.++.+|..+.
T Consensus 286 ~~~--------G~l~~~d~~tG~~~W~~~~-~~~~-~~s--------------sp~i~g~~l~~~~-~~G~l~~~d~~tG 340 (377)
T TIGR03300 286 DAD--------GVVVALDRRSGSELWKNDE-LKYR-QLT--------------APAVVGGYLVVGD-FEGYLHWLSREDG 340 (377)
T ss_pred CCC--------CeEEEEECCCCcEEEcccc-ccCC-ccc--------------cCEEECCEEEEEe-CCCEEEEEECCCC
Confidence 421 357889987764 76421 1111 111 2355678888764 5678999998776
Q ss_pred c--eEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 382 L--WFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 382 ~--W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
+ |+. . ++... .....++.+++||+.+.
T Consensus 341 ~~~~~~-~-~~~~~-----~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 341 SFVARL-K-TDGSG-----IASPPVVVGDGLLVQTR 369 (377)
T ss_pred CEEEEE-E-cCCCc-----cccCCEEECCEEEEEeC
Confidence 4 422 1 11111 11233567888887664
No 62
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.63 E-value=0.0029 Score=59.15 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=75.0
Q ss_pred EEEEE-cCCCCCcCccceEEEEEcCCCc---e--------eeCCCCCCCCceeeEEEe---CC-EEEEEeccCCC--C--
Q 012701 203 ELLVF-GRELTAHHISHVIYRYSILTNS---W--------SSGMRMNAPRCLFGSASL---GE-IAILAGGSDLE--G-- 262 (458)
Q Consensus 203 ~lyv~-GG~~~~~~~~~~v~~yd~~t~~---W--------~~~~~~p~~r~~~~~~~~---~~-~lyv~GG~~~~--~-- 262 (458)
.-|++ ||.+.+...++.+|+.+..... - .-+...|.+|++|++-++ +. -.++|||.... +
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 55666 7777666778888887665432 1 123678999999988776 22 45677885311 0
Q ss_pred ---------CccCeEEEEeCCCCcEE--EcCCCCCCCcceeEEEECCEEEEEccccC
Q 012701 263 ---------NILSSAEMYNSETQTWK--VLPSMKNPRKMCSGVFMDGKFYVIGGIGG 308 (458)
Q Consensus 263 ---------~~~~~v~~yd~~t~~W~--~~~~~p~~r~~~~~~~~~g~lyv~GG~~~ 308 (458)
+....|+..|++-+-.+ .+|.+..+.++|.+..-++.+|++||..-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEc
Confidence 12456788888887654 46778888889999999999999999763
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.54 E-value=0.0032 Score=62.52 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=83.3
Q ss_pred EEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCc------cCeEE
Q 012701 197 SLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNI------LSSAE 269 (458)
Q Consensus 197 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~------~~~v~ 269 (458)
.+++ +++|+.++.. ..+.+||+.|..-..+|.|+.+.....++.++++||++......... .-++.
T Consensus 71 F~al~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EEEecCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 3444 8899988643 34789999999999999998888777888889999999776433111 12233
Q ss_pred EEeC--------CCCcEEEcCCCCCCCcc-------eeEEEE-CCEEEE-EccccCCCCcccceEEEEECCCCceEEcCC
Q 012701 270 MYNS--------ETQTWKVLPSMKNPRKM-------CSGVFM-DGKFYV-IGGIGGSDSKVLTCGEEYDLETETWTEIPN 332 (458)
Q Consensus 270 ~yd~--------~t~~W~~~~~~p~~r~~-------~~~~~~-~g~lyv-~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~ 332 (458)
.|++ ..-.|+.+|+.|..+.. .+-+++ +..|+| +-|.. ...+.||+.+.+|+...+
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceeeccc
Confidence 4442 22258888886655432 233455 567887 32221 236899999999999986
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.46 E-value=0.0064 Score=60.43 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=84.3
Q ss_pred eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcc---cceEEEE--E-
Q 012701 248 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKV---LTCGEEY--D- 321 (458)
Q Consensus 248 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~---~~~v~~y--d- 321 (458)
.+.+|+.++.. ..+.+||..|..-...|.|+.+.....++.++++||++.......... ..+++++ +
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48888888553 348899999999998888888877777788899999998764221110 0144444 4
Q ss_pred -------CCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEE-EEcCCCeEEEEeCCCCceEEecc--CC
Q 012701 322 -------LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYA-ADYADMEVRKYDKERRLWFTIGR--LP 390 (458)
Q Consensus 322 -------~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv-~gg~~~~v~~yd~~~~~W~~v~~--lp 390 (458)
...-.|..+++.|...... ..... -.+.+++ +..|+| +.+.....+.||.++.+|+++++ ||
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~--~~~~~-----i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRR--YSDYR-----ITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCC--cccce-----EEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecC
Confidence 2234688887755333221 00000 0145666 567888 43322359999999999999984 45
Q ss_pred C
Q 012701 391 E 391 (458)
Q Consensus 391 ~ 391 (458)
.
T Consensus 221 F 221 (342)
T PF07893_consen 221 F 221 (342)
T ss_pred c
Confidence 4
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.21 E-value=0.034 Score=52.39 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=103.7
Q ss_pred eccceEEEEecCCCcEEeCCCCCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC---
Q 012701 163 CHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN--- 237 (458)
Q Consensus 163 ~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--- 237 (458)
.....++.+|+.++.-..+.... +. .++. -++.+|+.... .+.++|+.+++++.+...+
T Consensus 19 ~~~~~i~~~~~~~~~~~~~~~~~-~~-------G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 19 IPGGRIYRVDPDTGEVEVIDLPG-PN-------GMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEESSS-EE-------EEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTC
T ss_pred cCCCEEEEEECCCCeEEEEecCC-Cc-------eEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCC
Confidence 34567899999988654422211 11 1222 26888888532 3566799999998876552
Q ss_pred --CCCceeeEEEeCCEEEEEeccCCCCCcc--CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC-EEEEEccccCCCCc
Q 012701 238 --APRCLFGSASLGEIAILAGGSDLEGNIL--SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG-KFYVIGGIGGSDSK 312 (458)
Q Consensus 238 --~~r~~~~~~~~~~~lyv~GG~~~~~~~~--~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~lyv~GG~~~~~~~ 312 (458)
..+..-.++.-++.||+.--........ ..++++++. ++.+.+..- ....+--+..-++ .||+.--
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds------- 153 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADS------- 153 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEET-------
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeeccc-------
Confidence 2223333334467888874322211112 579999999 665554321 1111212223345 5777522
Q ss_pred ccceEEEEECCCCc--eEE---cCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 313 VLTCGEEYDLETET--WTE---IPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 313 ~~~~v~~yd~~~~~--W~~---i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
....|++|++.... +.. +..++... + .+-.+++ .+|.||+.....+.|++||++.+.-..+
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g------------~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGP-G------------YPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSS-C------------EEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCC-c------------CCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEE
Confidence 23468888886433 332 21222211 1 1113444 3789999988889999999996656555
Q ss_pred ccCCCc
Q 012701 387 GRLPER 392 (458)
Q Consensus 387 ~~lp~~ 392 (458)
. +|..
T Consensus 221 ~-~p~~ 225 (246)
T PF08450_consen 221 E-LPVP 225 (246)
T ss_dssp E--SSS
T ss_pred c-CCCC
Confidence 4 5533
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.17 E-value=0.025 Score=53.06 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=84.9
Q ss_pred EEEEE-eccCCCCCccCeEEEEeCCCCc--------E---EEcCCCCCCCcceeEEEE--CCE--EEEEccccCCC----
Q 012701 251 IAILA-GGSDLEGNILSSAEMYNSETQT--------W---KVLPSMKNPRKMCSGVFM--DGK--FYVIGGIGGSD---- 310 (458)
Q Consensus 251 ~lyv~-GG~~~~~~~~~~v~~yd~~t~~--------W---~~~~~~p~~r~~~~~~~~--~g~--lyv~GG~~~~~---- 310 (458)
..|++ ||.+........+++....... . +.+++.|.+|++|++-++ .|| ..+|||..--.
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 44554 7877666667777776655432 1 235789999999987654 444 56778864110
Q ss_pred -Cc-------ccceEEEEECCCCceEE--cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-------CeE
Q 012701 311 -SK-------VLTCGEEYDLETETWTE--IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-------MEV 373 (458)
Q Consensus 311 -~~-------~~~~v~~yd~~~~~W~~--i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-------~~v 373 (458)
.. ..-.|+..|++-+..+. ++.+....+.| .....++.+|++||.. ..+
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFH--------------vslar~D~VYilGGHsl~sd~Rpp~l 184 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFH--------------VSLARNDCVYILGGHSLESDSRPPRL 184 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEE--------------EEEecCceEEEEccEEccCCCCCCcE
Confidence 01 11225667777666653 33444555555 4556689999999843 233
Q ss_pred EEEeC---CCCceEEeccCCCccCCCCcccEEEEE--eCCEEEEEcCCCCCCCC
Q 012701 374 RKYDK---ERRLWFTIGRLPERANSMNGWGLAFRA--CGDRLIVIGGPKASGEG 422 (458)
Q Consensus 374 ~~yd~---~~~~W~~v~~lp~~~~~~~~~~~a~~~--~~~~lyv~GG~~~~~~~ 422 (458)
++.-. ...-+....-++.... ...|+++ -.+..+|+||+....+.
T Consensus 185 ~rlkVdLllGSP~vsC~vl~~glS----isSAIvt~~~~~e~iIlGGY~sdsQK 234 (337)
T PF03089_consen 185 YRLKVDLLLGSPAVSCTVLQGGLS----ISSAIVTQTGPHEYIILGGYQSDSQK 234 (337)
T ss_pred EEEEEeecCCCceeEEEECCCCce----EeeeeEeecCCCceEEEeccccccee
Confidence 33321 1122333333333322 1122222 23577888998765443
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.94 E-value=0.062 Score=50.57 Aligned_cols=205 Identities=17% Similarity=0.090 Sum_probs=111.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+.. .....++++|+.++.-....... ..+++.. ++.+|+... ....++|+.++++
T Consensus 11 ~g~l~~~D------~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~ 72 (246)
T PF08450_consen 11 DGRLYWVD------IPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKV 72 (246)
T ss_dssp TTEEEEEE------TTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEE
T ss_pred CCEEEEEE------cCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcE
Confidence 56778774 24567999999998765432211 3444444 688888854 3356679999999
Q ss_pred EEcCCCC-----CCCcceeEEEECCEEEEEccccCC-CCcccceEEEEECCCCceEEcCC-CCCCCCCCCCCCCCCCCcC
Q 012701 279 KVLPSMK-----NPRKMCSGVFMDGKFYVIGGIGGS-DSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAE 351 (458)
Q Consensus 279 ~~~~~~p-----~~r~~~~~~~~~g~lyv~GG~~~~-~~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~~~~~~~ 351 (458)
+.+...+ ..+.+-.++--+|+||+---.... .......++++++. .+.+.+.. +..+
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p--------------- 136 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP--------------- 136 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---------------
T ss_pred EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---------------
Confidence 8877653 222222333447888885322111 11111578999998 55554432 2211
Q ss_pred CCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCc--eEE---eccCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCe
Q 012701 352 APPLVAVV--NNELYAADYADMEVRKYDKERRL--WFT---IGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGF 423 (458)
Q Consensus 352 ~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~--W~~---v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~ 423 (458)
..++.. ++.||+.....+.|++|++.... +.. +..++... ++.-.+++ .+++|||..-. .
T Consensus 137 --NGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~pDG~~vD~~G~l~va~~~------~ 204 (246)
T PF08450_consen 137 --NGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP----GYPDGLAVDSDGNLWVADWG------G 204 (246)
T ss_dssp --EEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS----CEEEEEEEBTTS-EEEEEET------T
T ss_pred --cceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC----cCCCcceEcCCCCEEEEEcC------C
Confidence 145554 34689998888999999986433 332 22333322 11122333 36789987310 1
Q ss_pred eeEEEeecCCCCCCceEeeccCCCceeeeEEE
Q 012701 424 IELNSWVPSEGPPQWNLLARKQSANFVYNCAV 455 (458)
Q Consensus 424 ~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v 455 (458)
..+.+++++ ...-..+ .+|. ....+|+.
T Consensus 205 ~~I~~~~p~--G~~~~~i-~~p~-~~~t~~~f 232 (246)
T PF08450_consen 205 GRIVVFDPD--GKLLREI-ELPV-PRPTNCAF 232 (246)
T ss_dssp TEEEEEETT--SCEEEEE-E-SS-SSEEEEEE
T ss_pred CEEEEECCC--ccEEEEE-cCCC-CCEEEEEE
Confidence 156667765 2334444 3442 24455555
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.035 Score=52.29 Aligned_cols=178 Identities=16% Similarity=0.138 Sum_probs=111.3
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
.++.||.--|.. -.+.+.+||+.|++=....++|..-.+=+++.++++||..-= ....+.+||+.+ .+
T Consensus 54 ~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LK 121 (264)
T ss_dssp ETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TE
T ss_pred CCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ce
Confidence 478898886653 346789999999987766677776677799999999999822 246789999985 45
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEE-cC----CCCCCCCCCCCCCCCCCCcCCCC
Q 012701 280 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IP----NMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~----~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
.+...+.+..+...+..+..|++.-|. ..++..||++-+=.. +. ..|..+-.
T Consensus 122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS--------~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN--------------- 178 (264)
T PF05096_consen 122 KIGTFPYPGEGWGLTSDGKRLIMSDGS--------SRLYFLDPETFKEVRTIQVTDNGRPVSNLN--------------- 178 (264)
T ss_dssp EEEEEE-SSS--EEEECSSCEEEE-SS--------SEEEEE-TTT-SEEEEEE-EETTEE---EE---------------
T ss_pred EEEEEecCCcceEEEcCCCEEEEECCc--------cceEEECCcccceEEEEEEEECCEECCCcE---------------
Confidence 555555566777888777778887664 367888887643221 11 11111111
Q ss_pred EEEEECCEEEEEEcCCCeEEEEeCCCCc---eEEeccCCC------c----cCCCCcccEEEEEeCCEEEEEc
Q 012701 355 LVAVVNNELYAADYADMEVRKYDKERRL---WFTIGRLPE------R----ANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~~~v~~yd~~~~~---W~~v~~lp~------~----~~~~~~~~~a~~~~~~~lyv~G 414 (458)
-+-.++|.||+==...+.|.+-|+.++. |-.+..+-. . ..-+| |.|...-.+++||.|
T Consensus 179 ELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 179 ELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEE
T ss_pred eEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEe
Confidence 2445688999877788999999999987 444432211 1 11122 456555678999998
No 69
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.62 E-value=0.092 Score=50.42 Aligned_cols=121 Identities=16% Similarity=0.310 Sum_probs=72.4
Q ss_pred EEEEeccCCCCC-ccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 252 AILAGGSDLEGN-ILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 252 lyv~GG~~~~~~-~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
|||-|-++..+. ....+-.||..+.+|..+..-- .-.-...... +++||+.|-.+.. ......+..||..+.+|+.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCc-eEEEEEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeee
Confidence 355555554432 3567889999999999887541 1122233334 7788888766522 2245568899999999998
Q ss_pred cCCCC-CCCCCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcC-C--CeEEEEeCCCCceEEecc
Q 012701 330 IPNMS-PARGGAARGTEMPASAEAPPLVAVV---NNELYAADYA-D--MEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 330 i~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~-~--~~v~~yd~~~~~W~~v~~ 388 (458)
+..-. ..-.+. . ..+... ...+++.|.. . .-+.+|| ..+|+.+..
T Consensus 79 ~~~~~s~~ipgp---------v---~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGP---------V---TALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCc---------E---EEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 87521 111111 0 022222 3367777652 2 3466665 789999875
No 70
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.34 E-value=1.7 Score=45.51 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=101.1
Q ss_pred EEEeccceEEEEecCCC--cEEeCCCCCCCcc-ccccCceEEEeC-CEEEEEcCCCCCcCccceEEEEEcCCCc--eeeC
Q 012701 160 YFSCHLLEWEAFDPIRR--RWMHLPRMTSNEC-FMCSDKESLAVG-TELLVFGRELTAHHISHVIYRYSILTNS--WSSG 233 (458)
Q Consensus 160 ~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~-~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 233 (458)
|+......+.++|+.+. .|..-...+.... .......++..+ +.||+.. ....++.+|..|++ |+.-
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~-------~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT-------FDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec-------CCCeEEEEECCCCCEeeeec
Confidence 33333346788898876 5765332221110 000011223345 7777654 34578999998764 7764
Q ss_pred CCCCC-CC--ceeeEEEeCCEEEEEeccCCCC---CccCeEEEEeCCCCc--EEEcCCCC---CCC--------------
Q 012701 234 MRMNA-PR--CLFGSASLGEIAILAGGSDLEG---NILSSAEMYNSETQT--WKVLPSMK---NPR-------------- 288 (458)
Q Consensus 234 ~~~p~-~r--~~~~~~~~~~~lyv~GG~~~~~---~~~~~v~~yd~~t~~--W~~~~~~p---~~r-------------- 288 (458)
...+. .. ...+.++.++.+|+ |..+... .....++.+|..|++ |+.-...+ ..+
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 32221 11 12233445666654 4322110 123578999999875 87532111 001
Q ss_pred -cceeEEE--ECCEEEEEccccCC----------CCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 289 -KMCSGVF--MDGKFYVIGGIGGS----------DSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 289 -~~~~~~~--~~g~lyv~GG~~~~----------~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
...+.++ .++.+|+-.+.... .....+.++.+|.++.+ |+.-...+...... ..++
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~---------~~s~ 287 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD---------GPNQ 287 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc---------cCCC
Confidence 0112222 25677776442100 11233479999998765 87532211110000 0011
Q ss_pred CEEEE---ECCE---EEEEEcCCCeEEEEeCCCCc--eEE
Q 012701 354 PLVAV---VNNE---LYAADYADMEVRKYDKERRL--WFT 385 (458)
Q Consensus 354 ~~~~~---~~~~---lyv~gg~~~~v~~yd~~~~~--W~~ 385 (458)
+.+.. .++. +.+++...+.++.+|.++.+ |+.
T Consensus 288 p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 288 PSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 12221 2332 44455567789999998875 764
No 71
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.31 E-value=1.1 Score=42.83 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=94.7
Q ss_pred ceEEEeCCEEEEEcCCCCC----------------cCccceEEEEEcCCCc----eeeCCCCCCCCceeeEEE----eCC
Q 012701 195 KESLAVGTELLVFGRELTA----------------HHISHVIYRYSILTNS----WSSGMRMNAPRCLFGSAS----LGE 250 (458)
Q Consensus 195 ~~~~~~~~~lyv~GG~~~~----------------~~~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~~~----~~~ 250 (458)
.++.++++.|| |||.... ..-.+.|+.||..+++ |++--.-+...++-.+-. +++
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D 118 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYED 118 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcC
Confidence 44566788887 5553210 1123468999998876 655322222222222212 267
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEc
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI 330 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i 330 (458)
.|++.-+ ++. ..--++..|..++.=+.+.+-|... ...++|..+|-+ . +-..-...+++||+.+++|..
T Consensus 119 ~LLlAR~-DGh--~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i---~-~~~~g~~~i~~~Dli~~~~~~- 187 (339)
T PF09910_consen 119 RLLLARA-DGH--ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI---N-NFHKGVSGIHCLDLISGKWVI- 187 (339)
T ss_pred EEEEEec-CCc--ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec---c-ccccCCceEEEEEccCCeEEE-
Confidence 8877744 222 2356888898999888887666553 234455555533 2 223456789999999999932
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC
Q 012701 331 PNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 331 ~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
...+.+.+-.-.+...+. .+ .++...+++|++ ..+.+.+.||..+
T Consensus 188 e~f~~~~s~Dg~~~~~~~-~G---~~~s~ynR~faF--~rGGi~vgnP~~~ 232 (339)
T PF09910_consen 188 ESFDVSLSVDGGPVIRPE-LG---AMASAYNRLFAF--VRGGIFVGNPYNG 232 (339)
T ss_pred EecccccCCCCCceEeec-cc---cEEEEeeeEEEE--EeccEEEeCCCCC
Confidence 222222211101111111 11 577888888888 2346888888744
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=96.30 E-value=0.34 Score=51.01 Aligned_cols=284 Identities=11% Similarity=0.103 Sum_probs=138.7
Q ss_pred CCCCCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEEe-ecccCcee-e---E-EEE-Ee----ccceEE
Q 012701 101 DLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRL-RRLNGVIE-H---W-VYF-SC----HLLEWE 169 (458)
Q Consensus 101 ~~~~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~~-gg~~~~~~-~---~-l~~-~~----~~~~~~ 169 (458)
.....+..||-++...||..|+...+..++.||+.|+.++.+...+.- .+...... + + +-. .. ....++
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~ 182 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFY 182 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhh
Confidence 345678899999999999999999999999999999999988776652 22111100 0 0 000 00 000001
Q ss_pred E-EecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC-CCCCCCceeeEEE
Q 012701 170 A-FDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM-RMNAPRCLFGSAS 247 (458)
Q Consensus 170 ~-yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~ 247 (458)
. ..-..+.|................+ ..+...+ -+|..........+..||..+..-...+ ...... -.+...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~q~--~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~-V~~l~~ 257 (537)
T KOG0274|consen 183 RRRFRLSKNWRKLFRRGYKVLLGTDDH--VVLCLQL--HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG-VWGLAF 257 (537)
T ss_pred hhhhhccccccccccccceeecccCcc--hhhhhee--ecCeEEecCCCceeEEeecccceEEEeeccCCCCC-ceeEEE
Confidence 0 1112224443332211111100000 0111111 1221111123445667888776544431 112221 122222
Q ss_pred e-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 248 L-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 248 ~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
. ++.+++.|-.+ .++.++|..++.=...-. .......+......+.++|.. -+.|.+||..+..
T Consensus 258 ~~~~~~lvsgS~D------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~------D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 258 PSGGDKLVSGSTD------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSR------DNTVKVWDVTNGA 322 (537)
T ss_pred ecCCCEEEEEecC------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeeccC------CceEEEEeccCcc
Confidence 2 35566666654 346667777765443211 111111222333444444332 2568889888665
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC 406 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~ 406 (458)
-..+-. +..+ +...+.+++.+.+.|...+.|.+||+.+.+ .+..+... .++ .-..++
T Consensus 323 ~l~l~~---~h~~-------------~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~--cl~sl~gH----~~~-V~sl~~ 379 (537)
T KOG0274|consen 323 CLNLLR---GHTG-------------PVNCVQLDEPLLVSGSYDGTVKVWDPRTGK--CLKSLSGH----TGR-VYSLIV 379 (537)
T ss_pred eEEEec---cccc-------------cEEEEEecCCEEEEEecCceEEEEEhhhce--eeeeecCC----cce-EEEEEe
Confidence 433221 1111 114566678888888888899999998544 33333221 111 112244
Q ss_pred CC-EEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 407 GD-RLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 407 ~~-~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++ ..++-|+.+ ..+.+|+++.
T Consensus 380 ~~~~~~~Sgs~D------~~IkvWdl~~ 401 (537)
T KOG0274|consen 380 DSENRLLSGSLD------TTIKVWDLRT 401 (537)
T ss_pred cCcceEEeeeec------cceEeecCCc
Confidence 55 555556544 3567888765
No 73
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.27 E-value=1.6 Score=44.41 Aligned_cols=146 Identities=10% Similarity=-0.066 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..++++|..++.-..+...+..........-+..|++....++ ...++.+|+.++..+.+........ .....-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCC-CEEECCC
Confidence 5799999999877666544322222111112345665543332 2578999999988877754322111 1112235
Q ss_pred CE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---CeE
Q 012701 298 GK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD---MEV 373 (458)
Q Consensus 298 g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~---~~v 373 (458)
|+ |++..... ....++.+|+.+..+..+..-... ... ....-+++.+++.... ..|
T Consensus 289 g~~l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~~-~~~--------------~~~spdg~~i~~~~~~~~~~~i 348 (417)
T TIGR02800 289 GKSIAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGGY-NAS--------------PSWSPDGDLIAFVHREGGGFNI 348 (417)
T ss_pred CCEEEEEECCC-----CCceEEEEECCCCCEEEeecCCCC-ccC--------------eEECCCCCEEEEEEccCCceEE
Confidence 54 44443222 123689999998888766421111 111 1222355555554333 379
Q ss_pred EEEeCCCCceEEecc
Q 012701 374 RKYDKERRLWFTIGR 388 (458)
Q Consensus 374 ~~yd~~~~~W~~v~~ 388 (458)
+.+|+.++.++.+..
T Consensus 349 ~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 349 AVMDLDGGGERVLTD 363 (417)
T ss_pred EEEeCCCCCeEEccC
Confidence 999999887776653
No 74
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0037 Score=59.20 Aligned_cols=45 Identities=7% Similarity=0.120 Sum_probs=41.8
Q ss_pred CCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEEee
Q 012701 105 LIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLR 149 (458)
Q Consensus 105 l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~~g 149 (458)
.|-+||||+++.|+..|+.+.+.++..|||||.++..+..++..-
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 378999999999999999999999999999999999998888763
No 75
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.21 Score=49.90 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=99.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee-eEEEe-CCE-EEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF-GSASL-GEI-AILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
.--|++.+|.+ ..-.+|.-|-.+|. .+.++...++-- ++... ++. ..+++|.. .-++.||+++.+
T Consensus 224 ~~plllvaG~d----~~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak 291 (514)
T KOG2055|consen 224 TAPLLLVAGLD----GTLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLETAK 291 (514)
T ss_pred CCceEEEecCC----CcEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc------eEEEEeeccccc
Confidence 34566777764 33356666777775 444443332222 11111 343 66666633 568999999999
Q ss_pred EEEcCCCCC--CCcc-eeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 278 WKVLPSMKN--PRKM-CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 278 W~~~~~~p~--~r~~-~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
-+++.++.. .+.. .-.+..++++.++.|..| -|......|+.|..--.++......
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-------~I~lLhakT~eli~s~KieG~v~~~-------------- 350 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-------HIHLLHAKTKELITSFKIEGVVSDF-------------- 350 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCc-------eEEeehhhhhhhhheeeeccEEeeE--------------
Confidence 888765422 1222 234567888888877653 3566667777774321222222221
Q ss_pred EEEEECC-EEEEEEcCCCeEEEEeCCCCc----eEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEE
Q 012701 355 LVAVVNN-ELYAADYADMEVRKYDKERRL----WFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNS 428 (458)
Q Consensus 355 ~~~~~~~-~lyv~gg~~~~v~~yd~~~~~----W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~ 428 (458)
....++ .|++.|+ .+.||+||+.++. |..-+.+ +|..++ ..++.++.+|- . ..-+++
T Consensus 351 -~fsSdsk~l~~~~~-~GeV~v~nl~~~~~~~rf~D~G~v---------~gts~~~S~ng~ylA~GS-~-----~GiVNI 413 (514)
T KOG2055|consen 351 -TFSSDSKELLASGG-TGEVYVWNLRQNSCLHRFVDDGSV---------HGTSLCISLNGSYLATGS-D-----SGIVNI 413 (514)
T ss_pred -EEecCCcEEEEEcC-CceEEEEecCCcceEEEEeecCcc---------ceeeeeecCCCceEEecc-C-----cceEEE
Confidence 223444 4555554 5699999999873 3222221 244444 45666555553 2 225677
Q ss_pred eecC
Q 012701 429 WVPS 432 (458)
Q Consensus 429 ~~~~ 432 (458)
|+.+
T Consensus 414 Yd~~ 417 (514)
T KOG2055|consen 414 YDGN 417 (514)
T ss_pred eccc
Confidence 7754
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.90 E-value=1.6 Score=41.33 Aligned_cols=144 Identities=17% Similarity=0.025 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceee-CCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSS-GMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+..+|+.++ ..+.+.+||..+++... ++....++ ..+.. ++.+|+.++.+ ..+.+||+.+.+
T Consensus 42 g~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~ 106 (300)
T TIGR03866 42 GKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDPE---LFALHPNGKILYIANEDD------NLVTVIDIETRK 106 (300)
T ss_pred CCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCcc---EEEECCCCCEEEEEcCCC------CeEEEEECCCCe
Confidence 345777764 23568899998877643 22211111 22222 44676665422 468889998764
Q ss_pred EEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCE
Q 012701 278 WKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA-RGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~ 355 (458)
- +..++........+ .-+|++++++... ...+..||..+.+-... ++.. +... .
T Consensus 107 ~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~~~~~d~~~~~~~~~--~~~~~~~~~--------------~ 162 (300)
T TIGR03866 107 V--LAEIPVGVEPEGMAVSPDGKIVVNTSET------TNMAHFIDTKTYEIVDN--VLVDQRPRF--------------A 162 (300)
T ss_pred E--EeEeeCCCCcceEEECCCCCEEEEEecC------CCeEEEEeCCCCeEEEE--EEcCCCccE--------------E
Confidence 2 22222111112223 3367777765432 12356678776543221 1111 1111 1
Q ss_pred EEEECCEEE-EEEcCCCeEEEEeCCCCce
Q 012701 356 VAVVNNELY-AADYADMEVRKYDKERRLW 383 (458)
Q Consensus 356 ~~~~~~~ly-v~gg~~~~v~~yd~~~~~W 383 (458)
...-+++.+ +.+...+.+..||..+.+.
T Consensus 163 ~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 163 EFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 222355544 4433467899999987653
No 77
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.88 E-value=2 Score=42.19 Aligned_cols=232 Identities=10% Similarity=0.082 Sum_probs=105.8
Q ss_pred ceEEEEecCC-CcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcC-CCceeeCCCCCCCC
Q 012701 166 LEWEAFDPIR-RRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSIL-TNSWSSGMRMNAPR 240 (458)
Q Consensus 166 ~~~~~yDp~~-~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r 240 (458)
..+..||..+ +++..+...+.... ...+++ +..||+.+. ....+..|+.. +++++.....+.+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~-----~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQ-----VQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCC-----CccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCC
Confidence 4566677653 46655544432211 111333 446777543 23557777775 45676554333322
Q ss_pred ceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCccc
Q 012701 241 CLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVL 314 (458)
Q Consensus 241 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~ 314 (458)
.-...+.. +..||+..-. .+.+.+|+..++. .+.+...+.....|.+++. ++ .+|+.. . ..
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~------~~ 147 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-L------KE 147 (330)
T ss_pred CceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-C------CC
Confidence 11122222 4467776422 2567778776431 1222222222223444333 44 455543 2 22
Q ss_pred ceEEEEECCCCc-eEEcC----CCCCCCCCCCCCCCCCCCcCCCCEEEEE-C-CEEEEEEcCCCeEEEEeCC--CCceEE
Q 012701 315 TCGEEYDLETET-WTEIP----NMSPARGGAARGTEMPASAEAPPLVAVV-N-NELYAADYADMEVRKYDKE--RRLWFT 385 (458)
Q Consensus 315 ~~v~~yd~~~~~-W~~i~----~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~gg~~~~v~~yd~~--~~~W~~ 385 (458)
+.|.+||+.+.. ..... ..+.. .+ +-.++.. + ..+|+.....+.|.+||.. +++.+.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~-------------p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEG-AG-------------PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCC-CC-------------CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 468899987632 21110 01111 01 1123333 2 3688887667889888886 345544
Q ss_pred e---ccCCCccCCCCcccEEEE--EeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEee
Q 012701 386 I---GRLPERANSMNGWGLAFR--ACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLA 442 (458)
Q Consensus 386 v---~~lp~~~~~~~~~~~a~~--~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~ 442 (458)
+ ..+|..... ..|...+. .-+..||+.... ...+.+|+.+.+...++.+.
T Consensus 214 ~~~~~~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 214 VQTLDMMPADFSD-TRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCcCCC-CccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeE
Confidence 3 334432111 11222222 233467775321 12445566554444444443
No 78
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.77 E-value=1.8 Score=40.97 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=69.9
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC-CCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM-NAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
.+|+.++. .+.+.+||+.+++-...-.. ..++ +++.. +..+|+.++.+ ..+.+||..+++..
T Consensus 2 ~~~~s~~~------d~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEK------DNTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS------DTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecC------CCEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC------CeEEEEECCCCcEE
Confidence 45666543 34788899887754222111 1122 22222 34677776532 56888999988764
Q ss_pred E-cCCCCCCCcceeEEE-ECC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 280 V-LPSMKNPRKMCSGVF-MDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 280 ~-~~~~p~~r~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
. ++.... ....++ -++ .+|+.++.+ ..+.+||+.+.+- +..++...... .+
T Consensus 67 ~~~~~~~~---~~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~--~~~~~~~~~~~--------------~~ 120 (300)
T TIGR03866 67 GTLPSGPD---PELFALHPNGKILYIANEDD-------NLVTVIDIETRKV--LAEIPVGVEPE--------------GM 120 (300)
T ss_pred EeccCCCC---ccEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeE--EeEeeCCCCcc--------------eE
Confidence 3 222111 112222 244 466654322 3588899987542 21121111111 23
Q ss_pred EE-ECCEEEEEEcCC-CeEEEEeCCCCc
Q 012701 357 AV-VNNELYAADYAD-MEVRKYDKERRL 382 (458)
Q Consensus 357 ~~-~~~~lyv~gg~~-~~v~~yd~~~~~ 382 (458)
+. -++.+++++... ..+..||..+..
T Consensus 121 ~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 121 AVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 32 356666665443 456678876654
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=0.38 Score=48.07 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=81.5
Q ss_pred CCE-EEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC-C---CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 201 GTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA-P---RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 201 ~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
+|. ..+++| ...-+|.||..+.+-.++.++.. + -..|.+.-.+. ++++-|.. .-+......|
T Consensus 268 ~G~~~i~~s~------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~------G~I~lLhakT 334 (514)
T KOG2055|consen 268 NGHSVIFTSG------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNN------GHIHLLHAKT 334 (514)
T ss_pred CCceEEEecc------cceEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccC------ceEEeehhhh
Confidence 444 555654 34568999999999888876532 1 12233333344 55555544 3466677778
Q ss_pred CcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
+.|-.--.++.-...........+|+++||++ .|++||+.++.-...-.--...++. ..
T Consensus 335 ~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G--------eV~v~nl~~~~~~~rf~D~G~v~gt-------------s~ 393 (514)
T KOG2055|consen 335 KELITSFKIEGVVSDFTFSSDSKELLASGGTG--------EVYVWNLRQNSCLHRFVDDGSVHGT-------------SL 393 (514)
T ss_pred hhhhheeeeccEEeeEEEecCCcEEEEEcCCc--------eEEEEecCCcceEEEEeecCcccee-------------ee
Confidence 87743323332222222222344577777764 5899999987421110000111221 12
Q ss_pred EEEECCEEEEEEcCCCeEEEEeCCC
Q 012701 356 VAVVNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 356 ~~~~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
+...++.+++.|...+-|-+||..+
T Consensus 394 ~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 394 CISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred eecCCCceEEeccCcceEEEeccch
Confidence 3346888888887778888998544
No 80
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.62 E-value=2.5 Score=41.46 Aligned_cols=217 Identities=10% Similarity=0.057 Sum_probs=104.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
+..||+.. + ..+.+.+|+..++. ...+..++.....|.++.. +..+|+..- ..+.+.+||..++
T Consensus 91 g~~l~v~~-~-----~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~------~~~~v~v~d~~~~ 158 (330)
T PRK11028 91 GRFLFSAS-Y-----NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL------KEDRIRLFTLSDD 158 (330)
T ss_pred CCEEEEEE-c-----CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC------CCCEEEEEEECCC
Confidence 44577664 2 24567888876431 1222222222223444333 346777642 1367899998763
Q ss_pred -cEEEcC----CCCCCCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECC--CCceEEc---CCCCCCCCCCCCCC
Q 012701 277 -TWKVLP----SMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLE--TETWTEI---PNMSPARGGAARGT 344 (458)
Q Consensus 277 -~W~~~~----~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~i---~~~p~~r~~~~~~~ 344 (458)
...... ..+....-+.+++. +| .+|+.... .+.+.+||+. +++.+.+ ..+|....+.
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~---- 227 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDT---- 227 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC----
Confidence 222110 11112111223333 33 56776322 2466677765 4454433 3333221111
Q ss_pred CCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCC--CceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC
Q 012701 345 EMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKER--RLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG 420 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~--~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~ 420 (458)
..+..++.. ++ .+|+.....+.|.+|+.++ ..++.++..+..... +++++..-+..||+.+...
T Consensus 228 ------~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p---~~~~~~~dg~~l~va~~~~--- 295 (330)
T PRK11028 228 ------RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQP---RGFNIDHSGKYLIAAGQKS--- 295 (330)
T ss_pred ------ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccC---CceEECCCCCEEEEEEccC---
Confidence 000012222 33 5777655567788887643 456666554432211 2344444456778765321
Q ss_pred CCeeeEEEeecCCCCCCceEeeccCCCceeeeEEE
Q 012701 421 EGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAV 455 (458)
Q Consensus 421 ~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v 455 (458)
..+.+|..+..+..+..+...+.+..--+.+|
T Consensus 296 ---~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 296 ---HHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred ---CcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 24667776666677888777665554444443
No 81
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.55 E-value=0.23 Score=47.66 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=67.6
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC-----CCCCCc
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS-----MKNPRK 289 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-----~p~~r~ 289 (458)
....+-.||+.+.+|..+..-...-. ...... +++||+.|-....+.....+..||..+++|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 45678889999999998764421111 222223 67888888765444235678999999999998876 233322
Q ss_pred ceeEEEEC-CEEEEEccccCCCCcccceEEEEECCCCceEEcCC
Q 012701 290 MCSGVFMD-GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN 332 (458)
Q Consensus 290 ~~~~~~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~ 332 (458)
.......+ .++++.|... . ...-+..| ...+|..+..
T Consensus 93 a~~~~~~d~~~~~~aG~~~-~---g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA-N---GSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec-C---CCceEEEE--cCCceEeccc
Confidence 22222223 4577776642 1 22346677 4558998875
No 82
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.52 E-value=1.6 Score=41.70 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (458)
+.|+|.. ...++-.||..++.-+ ..+........++..+..-.+.||.+ ..+-+||..++.=..+
T Consensus 26 ~~LLvss-------WDgslrlYdv~~~~l~--~~~~~~~plL~c~F~d~~~~~~G~~d------g~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 26 SDLLVSS-------WDGSLRLYDVPANSLK--LKFKHGAPLLDCAFADESTIVTGGLD------GQVRRYDLNTGNEDQI 90 (323)
T ss_pred CcEEEEe-------ccCcEEEEeccchhhh--hheecCCceeeeeccCCceEEEeccC------ceEEEEEecCCcceee
Confidence 5565553 4456788888887322 12222233345566677667788876 4588999999977666
Q ss_pred CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC
Q 012701 282 PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN 361 (458)
Q Consensus 282 ~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~ 361 (458)
..-..+-..-......| ..|.||++ ..|..+|+....= +... +.+... .+..+.+
T Consensus 91 gth~~~i~ci~~~~~~~-~vIsgsWD-------~~ik~wD~R~~~~--~~~~-----------d~~kkV----y~~~v~g 145 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVG-CVISGSWD-------KTIKFWDPRNKVV--VGTF-----------DQGKKV----YCMDVSG 145 (323)
T ss_pred ccCCCceEEEEeeccCC-eEEEcccC-------ccEEEEecccccc--cccc-----------ccCceE----EEEeccC
Confidence 65433322211112233 45678876 4577788865110 0000 000000 2344567
Q ss_pred EEEEEEcCCCeEEEEeCCCCc
Q 012701 362 ELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 362 ~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.+.++|.....+.+||+.+..
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred CEEEEeecCceEEEEEccccc
Confidence 777788888999999987754
No 83
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.42 E-value=4.3 Score=42.89 Aligned_cols=208 Identities=12% Similarity=0.079 Sum_probs=105.9
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCcc----ccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNEC----FMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-- 229 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~----~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 229 (458)
.+|+......++++|..++ .|..-...+.... ........+..+++||+.. ....++.+|..|++
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDARLVALDAKTGKVV 143 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCEEEEEECCCCCEE
Confidence 4455444456888898876 5765443322110 0001223455677888653 33568999999875
Q ss_pred eeeCC-CCCCC-CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEE--cCCCCC-----------------
Q 012701 230 WSSGM-RMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKV--LPSMKN----------------- 286 (458)
Q Consensus 230 W~~~~-~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~--~~~~p~----------------- 286 (458)
|+.-. .+... ....+-++.++.||+....... .....+..||.+|++ |+. ++.-+.
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 76532 12111 1112334568887775332111 123578899999985 764 222100
Q ss_pred ------CCcc---eeEEEEC---CEEEEEccc----cC----CCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCC
Q 012701 287 ------PRKM---CSGVFMD---GKFYVIGGI----GG----SDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGT 344 (458)
Q Consensus 287 ------~r~~---~~~~~~~---g~lyv~GG~----~~----~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~ 344 (458)
.+.+ -....+| +.||+--|. .+ .+..+.+++...|++|.+ |..=. .|+.--..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~~D~wD~---- 297 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TPHDEWDY---- 297 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CCCCCccc----
Confidence 0000 0112343 567765443 11 123456789999999876 75322 22211111
Q ss_pred CCCCCcCCCCEEEE--ECCE---EEEEEcCCCeEEEEeCCCCc
Q 012701 345 EMPASAEAPPLVAV--VNNE---LYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 345 ~~~~~~~~~~~~~~--~~~~---lyv~gg~~~~v~~yd~~~~~ 382 (458)
...+.+.++- .+++ +++.+...+.++++|..+.+
T Consensus 298 ----d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 298 ----DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred ----cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 0011223333 2554 66666666777777777654
No 84
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.18 E-value=2.5 Score=38.81 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=63.1
Q ss_pred cceEEEEEcCCCceeeCCCCCCCC-ceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPR-CLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
...+.+||..++..... +.... .-.+.... ++.+++.++.+ ..+.+||..+..-...-. .....-....
T Consensus 72 ~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~-~~~~~i~~~~ 142 (289)
T cd00200 72 DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD------KTIKVWDVETGKCLTTLR-GHTDWVNSVA 142 (289)
T ss_pred CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC------CeEEEEECCCcEEEEEec-cCCCcEEEEE
Confidence 45788999887532111 11111 11222222 33566665533 468889988554222111 1111122233
Q ss_pred EEC-CEEEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCC
Q 012701 295 FMD-GKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADM 371 (458)
Q Consensus 295 ~~~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~ 371 (458)
... +++++.|..+ ..+..||+.+.+- ..+. ...... ..+... ++..+++++..+
T Consensus 143 ~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~---~~~~~i-------------~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 143 FSPDGTFVASSSQD-------GTIKLWDLRTGKCVATLT---GHTGEV-------------NSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred EcCcCCEEEEEcCC-------CcEEEEEccccccceeEe---cCcccc-------------ceEEECCCcCEEEEecCCC
Confidence 333 4555544323 3578888874431 1111 111000 023333 444566666688
Q ss_pred eEEEEeCCCCc
Q 012701 372 EVRKYDKERRL 382 (458)
Q Consensus 372 ~v~~yd~~~~~ 382 (458)
.+.+||..+..
T Consensus 200 ~i~i~d~~~~~ 210 (289)
T cd00200 200 TIKLWDLSTGK 210 (289)
T ss_pred cEEEEECCCCc
Confidence 99999987644
No 85
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.17 E-value=0.36 Score=45.57 Aligned_cols=96 Identities=28% Similarity=0.469 Sum_probs=70.1
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEE
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK 375 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~ 375 (458)
.+|.||.--|.-+ .+.+..||+.+++-....++|....+- +++.++++||.+....+..++
T Consensus 54 ~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgE--------------Git~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 54 DDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGE--------------GITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp ETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EE--------------EEEEETTEEEEEESSSSEEEE
T ss_pred CCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccce--------------eEEEECCEEEEEEecCCeEEE
Confidence 5789999877653 357889999999877666788777776 899999999999999999999
Q ss_pred EeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 376 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 376 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
||..+ .+.+..++.+. .|||++ ..+..||+--|..
T Consensus 115 yd~~t--l~~~~~~~y~~---EGWGLt--~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 115 YDPNT--LKKIGTFPYPG---EGWGLT--SDGKRLIMSDGSS 149 (264)
T ss_dssp EETTT--TEEEEEEE-SS---S--EEE--ECSSCEEEE-SSS
T ss_pred Ecccc--ceEEEEEecCC---cceEEE--cCCCEEEEECCcc
Confidence 99865 66777665543 568754 5677788877743
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.14 E-value=1.1 Score=44.48 Aligned_cols=200 Identities=15% Similarity=0.168 Sum_probs=95.4
Q ss_pred EEEEEcCCCceeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEE--eCCCCcEEEcCCCCCCCcceeEEE
Q 012701 220 IYRYSILTNSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMY--NSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 220 v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~y--d~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
++.||..+++++.+......-.-.-.+. -++.||+...... ....+..| +..+++.+.+...+......+.+.
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~---~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG---DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS---TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc---CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 4556668889977654321111111222 3678999966431 12445555 445568888776653333333333
Q ss_pred E--CCE-EEEEccccCCCCcccceEEEEECCCC-ceEEcCCCC-CCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEc
Q 012701 296 M--DGK-FYVIGGIGGSDSKVLTCGEEYDLETE-TWTEIPNMS-PARGGAARGTEMPASAEAPPLVAVV--NNELYAADY 368 (458)
Q Consensus 296 ~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~i~~~p-~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg 368 (458)
+ +++ ||+. -+. ..++.+|++..+ +-.....+. ....+.. ..++....+-.+... ++.+|+..-
T Consensus 94 ~~~~g~~l~va-ny~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~---~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 94 VDPDGRFLYVA-NYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPN---PDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp ECTTSSEEEEE-ETT------TTEEEEEEECTTSEEEEEEEEEESEEEESS---TTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred EecCCCEEEEE-Ecc------CCeEEEEEccCCcccceeeeecccCCCCCc---ccccccccceeEEECCCCCEEEEEec
Confidence 3 444 4554 332 245777888764 222221100 0000000 000000111123333 347888877
Q ss_pred CCCeEEEEeCCCCc--eEEec--cCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 369 ADMEVRKYDKERRL--WFTIG--RLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 369 ~~~~v~~yd~~~~~--W~~v~--~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
..+.|++|+..... ...+. .+|..... .++++..-+..+||+.-.. .++.+|.++.....++.+
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f~pdg~~~Yv~~e~s------~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAFSPDGKYAYVVNELS------NTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE-TTSSEEEEEETTT------TEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCC---cEEEEcCCcCEEEEecCCC------CcEEEEeecccCCceeEE
Confidence 77899999987766 65543 23332221 1244433455889988432 245666665333455443
No 87
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.06 E-value=4.2 Score=41.61 Aligned_cols=146 Identities=8% Similarity=-0.045 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..+|++|+.+++-+.+...+..-....-.--+.+|++....++ ...+++||..++..+.+...+.. .......-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAI-DTEPFWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCC-cCCeEECCC
Confidence 4799999999888777654321111111112345654432222 25799999999998877543211 111122235
Q ss_pred C-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC-CEEEEEEcC--CCeE
Q 012701 298 G-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN-NELYAADYA--DMEV 373 (458)
Q Consensus 298 g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~gg~--~~~v 373 (458)
| +|++..... ....++.+|+.++.++.+.... ..... ....-+ +.|++.... ...+
T Consensus 298 g~~i~f~s~~~-----g~~~iy~~d~~~g~~~~lt~~~-~~~~~--------------~~~Spdg~~i~~~~~~~~~~~l 357 (430)
T PRK00178 298 GRTLYFTSDRG-----GKPQIYKVNVNGGRAERVTFVG-NYNAR--------------PRLSADGKTLVMVHRQDGNFHV 357 (430)
T ss_pred CCEEEEEECCC-----CCceEEEEECCCCCEEEeecCC-CCccc--------------eEECCCCCEEEEEEccCCceEE
Confidence 5 455543222 1246889999988887764211 11111 111223 345544322 2368
Q ss_pred EEEeCCCCceEEecc
Q 012701 374 RKYDKERRLWFTIGR 388 (458)
Q Consensus 374 ~~yd~~~~~W~~v~~ 388 (458)
+.+|..++..+.+..
T Consensus 358 ~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 358 AAQDLQRGSVRILTD 372 (430)
T ss_pred EEEECCCCCEEEccC
Confidence 999999998887764
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.89 E-value=5.5 Score=41.18 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=81.0
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..+|++|+.+++-+.+...+.......-.-.+..|++....++ ...++.+|+.+++.+.+..-.. ........-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~-~~~~p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA-IDTEPSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC-CccceEECCC
Confidence 5799999998887766655432221211122445666544332 2579999999998887764321 1111122335
Q ss_pred CE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCC--CeE
Q 012701 298 GK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYAD--MEV 373 (458)
Q Consensus 298 g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~--~~v 373 (458)
|+ |++..... ....++.+|+.+++++.+..-. ..... ....-++ .|++..... ..|
T Consensus 317 G~~I~f~s~~~-----g~~~Iy~~dl~~g~~~~Lt~~g-~~~~~--------------~~~SpDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 317 GKSLIFTSERG-----GKPQIYRVNLASGKVSRLTFEG-EQNLG--------------GSITPDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred CCEEEEEECCC-----CCceEEEEECCCCCEEEEecCC-CCCcC--------------eeECCCCCEEEEEEecCCceEE
Confidence 55 44433222 1247899999999888774211 11111 1122244 455544322 478
Q ss_pred EEEeCCCCceEEec
Q 012701 374 RKYDKERRLWFTIG 387 (458)
Q Consensus 374 ~~yd~~~~~W~~v~ 387 (458)
+++|+.++..+.+.
T Consensus 377 ~~~dl~~g~~~~lt 390 (448)
T PRK04792 377 ARQDLETGAMQVLT 390 (448)
T ss_pred EEEECCCCCeEEcc
Confidence 89999998887765
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.89 E-value=1.3 Score=44.65 Aligned_cols=249 Identities=14% Similarity=0.169 Sum_probs=124.2
Q ss_pred CCCCChhHHHHhhcccCcccchhhhhccH---hHHHHhc------cCcEEEeecccCceeeEEEEEeccceEEEEecCCC
Q 012701 106 IQPIGRDNSISCLIRCSRSDYGSIASLNQ---SFRSLIR------SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRR 176 (458)
Q Consensus 106 ~~~LP~dl~~~iL~rlp~~~~~~l~~Vck---~wr~lv~------s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~ 176 (458)
-|.=|.|.+.-+-+|+-..... .+.|.| ||+..++ +++++..|...|. +..||..++
T Consensus 35 sp~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~-------------V~vfD~k~r 100 (487)
T KOG0310|consen 35 SPKHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGH-------------VKVFDMKSR 100 (487)
T ss_pred CCCCCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEeecCCeEEEccCCcCc-------------EEEeccccH
Confidence 3566777777666666543322 233444 4555554 4566666666554 456784442
Q ss_pred cEE-eC--CCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC----CCCceeeEEEeC
Q 012701 177 RWM-HL--PRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN----APRCLFGSASLG 249 (458)
Q Consensus 177 ~W~-~l--~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----~~r~~~~~~~~~ 249 (458)
.-. .+ ...|....++ ...++.++++|+.. ..+..+|..+..= ...+. .-|+ ......+
T Consensus 101 ~iLR~~~ah~apv~~~~f------~~~d~t~l~s~sDd------~v~k~~d~s~a~v--~~~l~~htDYVR~-g~~~~~~ 165 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKF------SPQDNTMLVSGSDD------KVVKYWDLSTAYV--QAELSGHTDYVRC-GDISPAN 165 (487)
T ss_pred HHHHHHhhccCceeEEEe------cccCCeEEEecCCC------ceEEEEEcCCcEE--EEEecCCcceeEe-eccccCC
Confidence 111 11 1112211111 23588899998542 2344455554431 11111 1122 1222347
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceE
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 328 (458)
+.|++.||+++ .+-.||..+.+ ..+-.+.....--..+++ .|.+++..|. +.+-+||+.++.=
T Consensus 166 ~hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG--------n~vkVWDl~~G~q- 229 (487)
T KOG0310|consen 166 DHIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG--------NSVKVWDLTTGGQ- 229 (487)
T ss_pred CeEEEecCCCc------eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC--------CeEEEEEecCCce-
Confidence 78999999985 47778888773 222233322222223333 4355554442 2467788765432
Q ss_pred EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeC
Q 012701 329 EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACG 407 (458)
Q Consensus 329 ~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~ 407 (458)
++..+..| ....+ ++... ++.=.+-|+-+..+.+|| +..|+.+-.+..+..-+ .+ .+..+
T Consensus 230 ----ll~~~~~H----~KtVT-----cL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvL---si-avs~d 290 (487)
T KOG0310|consen 230 ----LLTSMFNH----NKTVT-----CLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVL---SI-AVSPD 290 (487)
T ss_pred ----ehhhhhcc----cceEE-----EEEeecCCceEeecccccceEEEE--ccceEEEEeeeccccee---eE-EecCC
Confidence 11111111 00000 12222 445555566788999999 56688776554433211 12 23457
Q ss_pred CEEEEEcCCCC
Q 012701 408 DRLIVIGGPKA 418 (458)
Q Consensus 408 ~~lyv~GG~~~ 418 (458)
+.-.++|+.+.
T Consensus 291 d~t~viGmsnG 301 (487)
T KOG0310|consen 291 DQTVVIGMSNG 301 (487)
T ss_pred CceEEEecccc
Confidence 78888887543
No 90
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=94.76 E-value=2.7 Score=37.98 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=75.1
Q ss_pred EEEeCCEEEEEcCCCCCcCccceEEEEEcCCCce--eeC----CCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeE
Q 012701 197 SLAVGTELLVFGRELTAHHISHVIYRYSILTNSW--SSG----MRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSA 268 (458)
Q Consensus 197 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v 268 (458)
++...+++|+|-|. .+|+++..+... +.+ +.+|. .--++... ++++|++-| +..
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~--~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS--PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC--CccEEEEECCCCEEEEECC--------CEE
Confidence 44556899999654 577777652111 111 11221 11122222 378999965 457
Q ss_pred EEEeCCCCcEE---EcCCCCCCC--cceeEE-EE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCC
Q 012701 269 EMYNSETQTWK---VLPSMKNPR--KMCSGV-FM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 340 (458)
Q Consensus 269 ~~yd~~t~~W~---~~~~~p~~r--~~~~~~-~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~ 340 (458)
++|+..+..+. .+...+.+. ..-.+| .. ++++|++.|. ..++||..+++... ..|......
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~--~yP~~i~~~ 142 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDP--GYPKLIETD 142 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccC--CCCcchhhc
Confidence 77776642221 111111111 222233 33 6899999763 46888876654321 111111100
Q ss_pred CCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 341 ARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
-+| ++.. .-.+....++++|++-| ...++||..+++
T Consensus 143 w~g--~p~~--idaa~~~~~~~~yfF~g--~~y~~~d~~~~~ 178 (194)
T cd00094 143 FPG--VPDK--VDAAFRWLDGYYYFFKG--DQYWRFDPRSKE 178 (194)
T ss_pred CCC--cCCC--cceeEEeCCCcEEEEEC--CEEEEEeCccce
Confidence 000 1100 00023333489999954 799999998776
No 91
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.72 E-value=0.63 Score=39.05 Aligned_cols=81 Identities=16% Similarity=0.246 Sum_probs=55.9
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC---CCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM---SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD 370 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~ 370 (458)
+.+||.+|.++-.. ......|.+||+.+.+|+.+..+ ...... ..++.++|+|-++....
T Consensus 2 icinGvly~~a~~~---~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~--------------~~L~~~~G~L~~v~~~~ 64 (129)
T PF08268_consen 2 ICINGVLYWLAWSE---DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCS--------------STLIEYKGKLALVSYND 64 (129)
T ss_pred EEECcEEEeEEEEC---CCCCcEEEEEEcCCceEEEEEeeeeeccccCc--------------cEEEEeCCeEEEEEecC
Confidence 56899999887652 23456799999999999988742 111222 27889999999986432
Q ss_pred ------CeEEEE-eCCCCceEEecc-CCC
Q 012701 371 ------MEVRKY-DKERRLWFTIGR-LPE 391 (458)
Q Consensus 371 ------~~v~~y-d~~~~~W~~v~~-lp~ 391 (458)
-++|+. |..+.+|.+..- +|.
T Consensus 65 ~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~ 93 (129)
T PF08268_consen 65 QGEPDSIDIWVLEDYEKQEWSKKHIVLPP 93 (129)
T ss_pred CCCcceEEEEEeeccccceEEEEEEECCh
Confidence 366777 566789987743 444
No 92
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.71 E-value=3.3 Score=40.29 Aligned_cols=216 Identities=18% Similarity=0.274 Sum_probs=93.7
Q ss_pred CcEEeCCCCCCCc-cccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC-CCCCCCceeeEEEe-CCEE
Q 012701 176 RRWMHLPRMTSNE-CFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM-RMNAPRCLFGSASL-GEIA 252 (458)
Q Consensus 176 ~~W~~l~~~p~~~-~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~~~l 252 (458)
.+|.....-.... .++. ..+...++..|++|.. ..++.-.=.-.+|++++ +.+.|...+....+ ++.+
T Consensus 47 ~tW~~~~~~~~~~~~~~l--~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHL--NSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSA 117 (302)
T ss_dssp SS-EE-----S-----EE--EEEEEETTEEEEEEET-------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEE
T ss_pred ccccccccCCCccceeeE--EEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcE
Confidence 4788765322221 1111 1234457889998732 23444333456899985 23344444544444 5567
Q ss_pred EEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcC
Q 012701 253 ILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 253 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~ 331 (458)
+++|.. ..+++=.=.-.+|+.+..-.. .....+. .-+|++++++... +-....|+....|+...
T Consensus 118 ~l~~~~-------G~iy~T~DgG~tW~~~~~~~~-gs~~~~~r~~dG~~vavs~~G-------~~~~s~~~G~~~w~~~~ 182 (302)
T PF14870_consen 118 ELAGDR-------GAIYRTTDGGKTWQAVVSETS-GSINDITRSSDGRYVAVSSRG-------NFYSSWDPGQTTWQPHN 182 (302)
T ss_dssp EEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTS-------SEEEEE-TT-SS-EEEE
T ss_pred EEEcCC-------CcEEEeCCCCCCeeEcccCCc-ceeEeEEECCCCcEEEEECcc-------cEEEEecCCCccceEEc
Confidence 776532 234433334458998754222 2222233 3466766565432 22346788888998776
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEe--CCCCceEEeccCCCccCCCCcccEEEEEe--C
Q 012701 332 NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYD--KERRLWFTIGRLPERANSMNGWGLAFRAC--G 407 (458)
Q Consensus 332 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd--~~~~~W~~v~~lp~~~~~~~~~~~a~~~~--~ 407 (458)
.....|... ....-++.|+++. ....++.=+ -...+|.+.. .|... .+|++--.+. +
T Consensus 183 r~~~~riq~--------------~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~-~~~~~---~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 183 RNSSRRIQS--------------MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI-IPIKT---NGYGILDLAYRPP 243 (302)
T ss_dssp --SSS-EEE--------------EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B--TTSS-----S-EEEEEESSS
T ss_pred cCccceehh--------------ceecCCCCEEEEe-CCcEEEEccCCCCcccccccc-CCccc---CceeeEEEEecCC
Confidence 543333322 2223367888875 455666665 3456787732 23322 2355332222 5
Q ss_pred CEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeec
Q 012701 408 DRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 408 ~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 443 (458)
+.+++.||.. ..|.-..+..+|+....
T Consensus 244 ~~~wa~gg~G---------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 244 NEIWAVGGSG---------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp S-EEEEESTT----------EEEESSTTSS-EE-GG
T ss_pred CCEEEEeCCc---------cEEEeCCCCccceECcc
Confidence 7899999853 24555556779988753
No 93
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.57 E-value=3.6 Score=38.99 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=102.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
+.+..+|+++..-++.+ +|..+.. .+-..+++ .+.|+..|-.. .. =+.||.++.-+..+.. ..-.-+
T Consensus 124 ~aI~R~dpkt~evt~f~-lp~~~a~--~nlet~vfD~~G~lWFt~q~G----~y---GrLdPa~~~i~vfpaP-qG~gpy 192 (353)
T COG4257 124 LAIGRLDPKTLEVTRFP-LPLEHAD--ANLETAVFDPWGNLWFTGQIG----AY---GRLDPARNVISVFPAP-QGGGPY 192 (353)
T ss_pred ceeEEecCcccceEEee-cccccCC--CcccceeeCCCccEEEeeccc----cc---eecCcccCceeeeccC-CCCCCc
Confidence 47888999887665544 2222211 12223444 45666665321 11 1566766655444322 222222
Q ss_pred -eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC-CcceeEE--EECCEEEEEccccCCCCcccceEEE
Q 012701 244 -GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP-RKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEE 319 (458)
Q Consensus 244 -~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~ 319 (458)
.++.-++.+|+.-= .-+.+-..|+.+..=+.++. |.+ ......+ --.|++++.- .....+++
T Consensus 193 Gi~atpdGsvwyasl------agnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~witt-------wg~g~l~r 258 (353)
T COG4257 193 GICATPDGSVWYASL------AGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITT-------WGTGSLHR 258 (353)
T ss_pred ceEECCCCcEEEEec------cccceEEcccccCCcceecC-CCcccccccccccCccCcEEEec-------cCCceeeE
Confidence 33445778887722 12556777888875555543 222 2222222 2346677651 12346899
Q ss_pred EECCCCceEEcCCCCC--CCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 320 YDLETETWTEIPNMSP--ARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 320 yd~~~~~W~~i~~~p~--~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
||+....|.+.+ +|. +|... .-+--.+++++-....+.|.+||+++.+.+.++
T Consensus 259 fdPs~~sW~eyp-LPgs~arpys--------------~rVD~~grVW~sea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 259 FDPSVTSWIEYP-LPGSKARPYS--------------MRVDRHGRVWLSEADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eCcccccceeee-CCCCCCCcce--------------eeeccCCcEEeeccccCceeecCcccceEEEec
Confidence 999999999876 222 22222 223346788887777889999999999998775
No 94
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.52 E-value=2.3 Score=39.20 Aligned_cols=137 Identities=13% Similarity=0.137 Sum_probs=80.9
Q ss_pred ccceEEEEEcCCCceeeC-CCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 216 ISHVIYRYSILTNSWSSG-MRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
....+-.+||..+.--+. ..-....- -.+.+.++.-+..||-+ ..+.++|.+|++-... ....-..--++
T Consensus 37 sdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgD------k~v~vwDV~TGkv~Rr--~rgH~aqVNtV 107 (307)
T KOG0316|consen 37 SDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGD------KAVQVWDVNTGKVDRR--FRGHLAQVNTV 107 (307)
T ss_pred CCceEEeecccccceeeeecCCCceee-eccccccccccccCCCC------ceEEEEEcccCeeeee--cccccceeeEE
Confidence 345677788877654322 11000011 12223344445555533 5688999999863211 00000111123
Q ss_pred EECC--EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCe
Q 012701 295 FMDG--KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADME 372 (458)
Q Consensus 295 ~~~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~ 372 (458)
.+|. .+.+.|+.+ .++..||-.++..+.+..+-..+-+. ..+.+.+..++.|..++.
T Consensus 108 ~fNeesSVv~SgsfD-------~s~r~wDCRS~s~ePiQildea~D~V--------------~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 108 RFNEESSVVASGSFD-------SSVRLWDCRSRSFEPIQILDEAKDGV--------------SSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred EecCcceEEEecccc-------ceeEEEEcccCCCCccchhhhhcCce--------------eEEEecccEEEeeccCCc
Confidence 3433 355556654 46788999998887777666666666 678888999999988899
Q ss_pred EEEEeCCCCc
Q 012701 373 VRKYDKERRL 382 (458)
Q Consensus 373 v~~yd~~~~~ 382 (458)
+..||+..++
T Consensus 167 vRtydiR~G~ 176 (307)
T KOG0316|consen 167 VRTYDIRKGT 176 (307)
T ss_pred EEEEEeecce
Confidence 9999987665
No 95
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.23 E-value=4.9 Score=44.81 Aligned_cols=131 Identities=12% Similarity=0.216 Sum_probs=69.6
Q ss_pred cceEEEEEcCCCceeeCCCCC-CCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE-EEcCCCCCCCccee
Q 012701 217 SHVIYRYSILTNSWSSGMRMN-APRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW-KVLPSMKNPRKMCS 292 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~ 292 (458)
...+.+||..+++-.. .+. ....-.+++.. ++.+++.||.+ ..+.+||..++.- ..+. ......+
T Consensus 554 Dg~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~---~~~~v~~ 622 (793)
T PLN00181 554 EGVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD------GSVKLWSINQGVSIGTIK---TKANICC 622 (793)
T ss_pred CCeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC------CEEEEEECCCCcEEEEEe---cCCCeEE
Confidence 4568889987764322 111 11112233332 45677788765 3588888876532 1121 1111122
Q ss_pred EEE--ECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEc
Q 012701 293 GVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADY 368 (458)
Q Consensus 293 ~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg 368 (458)
... .++.++++|+.+ ..+.+||+.+.. ...+. ..... -..+...++..++.++
T Consensus 623 v~~~~~~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~----~h~~~------------V~~v~f~~~~~lvs~s 679 (793)
T PLN00181 623 VQFPSESGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMI----GHSKT------------VSYVRFVDSSTLVSSS 679 (793)
T ss_pred EEEeCCCCCEEEEEeCC-------CeEEEEECCCCCccceEec----CCCCC------------EEEEEEeCCCEEEEEE
Confidence 222 257778887755 368889987542 11111 00000 0023334677777777
Q ss_pred CCCeEEEEeCCCC
Q 012701 369 ADMEVRKYDKERR 381 (458)
Q Consensus 369 ~~~~v~~yd~~~~ 381 (458)
.++.|.+||....
T Consensus 680 ~D~~ikiWd~~~~ 692 (793)
T PLN00181 680 TDNTLKLWDLSMS 692 (793)
T ss_pred CCCEEEEEeCCCC
Confidence 8889999998653
No 96
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.22 E-value=6.4 Score=39.05 Aligned_cols=235 Identities=16% Similarity=0.118 Sum_probs=116.6
Q ss_pred EEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcC--CCceeeCCCCCCCCce
Q 012701 168 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSIL--TNSWSSGMRMNAPRCL 242 (458)
Q Consensus 168 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~r~~ 242 (458)
.+.||..+.++..+....... ..+.+++ ++.||+..... .....|..|... +++.+.+...+.....
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~-----~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGE-----NPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESS-----SECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred EEEEcCCCCCceEeeeecCCC-----CCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 455788888887665422111 1112333 67888886432 123345555544 4678777665533333
Q ss_pred eeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCC-cEEEc---------CCC---CCCCcceeEEEE-CC-EEEEEc
Q 012701 243 FGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQ-TWKVL---------PSM---KNPRKMCSGVFM-DG-KFYVIG 304 (458)
Q Consensus 243 ~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~---------~~~---p~~r~~~~~~~~-~g-~lyv~G 304 (458)
.+.+.+ +..||+.--. ...+.+|++..+ +-... .+- ...-.-|.+.+. ++ .+||..
T Consensus 89 p~~i~~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 333443 4577776321 256777877763 21111 011 111223444444 44 466542
Q ss_pred cccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcCCCeEEEEeCC
Q 012701 305 GIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 305 G~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~~~~v~~yd~~ 379 (458)
. -.+.|++|+..... .........+. +.+|...++ +..+|++.-..+.|.+|+..
T Consensus 163 -l------G~D~v~~~~~~~~~~~l~~~~~~~~~~-------------G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 163 -L------GADRVYVYDIDDDTGKLTPVDSIKVPP-------------GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp -T------TTTEEEEEEE-TTS-TEEEEEEEECST-------------TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred -c------CCCEEEEEEEeCCCceEEEeecccccc-------------CCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 1 13467888877655 55433221111 111123333 34799998888888888776
Q ss_pred --CCceEEec---cCCCccCCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeec
Q 012701 380 --RRLWFTIG---RLPERANSMNGWGLAFRAC--GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 380 --~~~W~~v~---~lp~~~~~~~~~~~a~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 443 (458)
+..++.+. .+|...... .+...++.. +..||+.... ...+-+|..+..+.+.+.+..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEE
T ss_pred ccCCceeEEEEeeecccccccc-CCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEE
Confidence 66666654 444422111 123444444 5578886532 124556666544444444433
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.14 E-value=6.1 Score=39.80 Aligned_cols=205 Identities=14% Similarity=0.094 Sum_probs=113.4
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee-eEEEeC--CEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF-GSASLG--EIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
.+++.+++||. .+.+.++|+.|..=... +..-|... +.+... +.+|..+- -.++-+|+....
T Consensus 212 ~Dgkylatgg~------d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 212 SDGKYLATGGR------DRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWSIDQL 276 (479)
T ss_pred CCCcEEEecCC------CceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeec-------CCceEEEehhHh
Confidence 47888899975 35577888877542221 22222221 222222 35555421 134555555543
Q ss_pred cEEEcCCCCCCCcceeEE------EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCc
Q 012701 277 TWKVLPSMKNPRKMCSGV------FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASA 350 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~ 350 (458)
.. -...++|... .-.++...+||.+ .++..|++...+=.... +..
T Consensus 277 s~------vetlyGHqd~v~~IdaL~reR~vtVGgrD-------rT~rlwKi~eesqlifr--g~~-------------- 327 (479)
T KOG0299|consen 277 SY------VETLYGHQDGVLGIDALSRERCVTVGGRD-------RTVRLWKIPEESQLIFR--GGE-------------- 327 (479)
T ss_pred HH------HHHHhCCccceeeechhcccceEEecccc-------ceeEEEeccccceeeee--CCC--------------
Confidence 22 1122333322 2356788888876 34555655322111100 111
Q ss_pred CCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCcc------CCCCcccEEEEEeCC-EEEEEcCCCCCCCCe
Q 012701 351 EAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERA------NSMNGWGLAFRACGD-RLIVIGGPKASGEGF 423 (458)
Q Consensus 351 ~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~------~~~~~~~~a~~~~~~-~lyv~GG~~~~~~~~ 423 (458)
++.-+++.+|..-|+.|..++.|..++..++.=..+..++.+. ...+.|-.+++++.+ .|+..|- ..
T Consensus 328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS------~~ 401 (479)
T KOG0299|consen 328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS------WS 401 (479)
T ss_pred CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC------CC
Confidence 2233788899999999999999999998877643332222211 111236666666654 4555553 23
Q ss_pred eeEEEeecCCCCCCceEeeccCCCceeeeEE
Q 012701 424 IELNSWVPSEGPPQWNLLARKQSANFVYNCA 454 (458)
Q Consensus 424 ~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~ 454 (458)
..+..|..+++...-+.+..+|...|+-+.+
T Consensus 402 G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 402 GCVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred CceEEEEecCCccccceeeecccccEEEEEE
Confidence 3678888888777888888888777776554
No 98
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.09 E-value=1.4 Score=43.31 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=74.8
Q ss_pred CeEEEEeCCCC-----cEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc-eEEcCCCCCCCCC
Q 012701 266 SSAEMYNSETQ-----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGG 339 (458)
Q Consensus 266 ~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~~p~~r~~ 339 (458)
..+.+|+.... +.+.+......-.-.+.+.++|+|.+..| +.+.+|++..+. +.....+..+-..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecceEEE
Confidence 66889999885 56666554444445666778999666544 357788888877 8777655444433
Q ss_pred CCCCCCCCCCcCCCCEEEEECCEEEEEEcCCC-eEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe-CCEEEEEcC
Q 012701 340 AARGTEMPASAEAPPLVAVVNNELYAADYADM-EVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GDRLIVIGG 415 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~-~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG 415 (458)
. .+.+.++.|++.+...+ .+..|+...++-..++.-..+. |..++..+ ++. .++++
T Consensus 133 ~--------------sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-----~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 133 T--------------SLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR-----WVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp E--------------EEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B-----EEEEEEEE-SSS-EEEEE
T ss_pred E--------------EEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc-----cEEEEEEecCCc-EEEEE
Confidence 3 67788887776654332 5567788777777777544433 33555555 555 44443
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.05 E-value=4.1 Score=46.85 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=90.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC----------CC---CCceeeEEEe--CCEEEEEeccCCCCCcc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM----------NA---PRCLFGSASL--GEIAILAGGSDLEGNIL 265 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----------p~---~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 265 (458)
++.|||... ..+.|++||+.++....+..- .. -..-.+.+.. ++.|||.... .
T Consensus 694 ~g~LyVad~------~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n 761 (1057)
T PLN02919 694 NEKVYIAMA------GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------S 761 (1057)
T ss_pred CCeEEEEEC------CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------C
Confidence 578888752 345789999887765432110 00 0111123332 3569998543 2
Q ss_pred CeEEEEeCCCCcEEEcC--C--CCC--------------CC-cce-eEE-EECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 266 SSAEMYNSETQTWKVLP--S--MKN--------------PR-KMC-SGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~--~--~p~--------------~r-~~~-~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
+.+.+||+.++....+. . .+. .. ... +++ .-+|.|||.-..+ ..|.+||+.+
T Consensus 762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-------~rIrviD~~t 834 (1057)
T PLN02919 762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-------HKIKKLDPAT 834 (1057)
T ss_pred CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-------CEEEEEECCC
Confidence 67999999877533211 0 000 00 011 222 3467899985433 5789999998
Q ss_pred CceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 325 ETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 325 ~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+....+..... .+...|....+....|..+++- +|+||+....++.|.++|..++.
T Consensus 835 g~v~tiaG~G~--~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRVTTLAGTGK--AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeEEEEeccCC--cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 88776653211 1111111122222233345543 68999999889999999998875
No 100
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.03 E-value=8.6 Score=40.24 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=64.8
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCC-----cceeEEEEC-CEEEEEccccCCCCcccc
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPR-----KMCSGVFMD-GKFYVIGGIGGSDSKVLT 315 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r-----~~~~~~~~~-g~lyv~GG~~~~~~~~~~ 315 (458)
+-++.+++||+.... ..++.+|..+++ |+.-...+... .....++.+ +++|+... ..
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------~g 120 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------DG 120 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------CC
Confidence 345679999987431 468889998875 88643322111 111223456 88887532 13
Q ss_pred eEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEE--------cCCCeEEEEeCCCC--ce
Q 012701 316 CGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAAD--------YADMEVRKYDKERR--LW 383 (458)
Q Consensus 316 ~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~g--------g~~~~v~~yd~~~~--~W 383 (458)
.++.+|.++.+ |+.-......... ....+.++.++.+|+-. +..+.++.+|..++ .|
T Consensus 121 ~v~AlD~~TG~~~W~~~~~~~~~~~~-----------~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 121 RLVALDAETGKQVWKFGNNDQVPPGY-----------TMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEEECCCCCEeeeecCCCCcCcce-----------EecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 67889988654 8754321110000 00013455667766542 13467899999876 48
Q ss_pred EE
Q 012701 384 FT 385 (458)
Q Consensus 384 ~~ 385 (458)
+.
T Consensus 190 ~~ 191 (488)
T cd00216 190 RF 191 (488)
T ss_pred Ee
Confidence 65
No 101
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.87 E-value=0.016 Score=55.20 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=39.0
Q ss_pred CCCCChhHHHHhhcccCc-----ccchhhhhccHhHHHHhccCcEEEee
Q 012701 106 IQPIGRDNSISCLIRCSR-----SDYGSIASLNQSFRSLIRSGELYRLR 149 (458)
Q Consensus 106 ~~~LP~dl~~~iL~rlp~-----~~~~~l~~Vck~wr~lv~s~~~y~~g 149 (458)
|..||||++.+||.++=. .++.++++|||.|+-.+.+++|+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 568999999999987654 79999999999999999999988664
No 102
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.78 E-value=0.72 Score=45.32 Aligned_cols=131 Identities=11% Similarity=0.002 Sum_probs=80.7
Q ss_pred ceEEEEEcCCC-----ceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc-EEEcCCCCCCCcce
Q 012701 218 HVIYRYSILTN-----SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLPSMKNPRKMC 291 (458)
Q Consensus 218 ~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~ 291 (458)
..+++|+..+. +++.+.....+-.-.+.+.++++|.+..| +.+.+|+...+. +...+.+..+-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~ 133 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT 133 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence 77999999985 56665554444445677778999777655 568889888888 88887766655666
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCC
Q 012701 292 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYAD 370 (458)
Q Consensus 292 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~ 370 (458)
+..+.++.|+|- -.. ..-.+..|+....+-..+..-..++... ++..+ ++..++++-..
T Consensus 134 sl~~~~~~I~vg-D~~-----~sv~~~~~~~~~~~l~~va~d~~~~~v~--------------~~~~l~d~~~~i~~D~~ 193 (321)
T PF03178_consen 134 SLSVFKNYILVG-DAM-----KSVSLLRYDEENNKLILVARDYQPRWVT--------------AAEFLVDEDTIIVGDKD 193 (321)
T ss_dssp EEEEETTEEEEE-ESS-----SSEEEEEEETTTE-EEEEEEESS-BEEE--------------EEEEE-SSSEEEEEETT
T ss_pred EEeccccEEEEE-Ecc-----cCEEEEEEEccCCEEEEEEecCCCccEE--------------EEEEecCCcEEEEEcCC
Confidence 666778866653 221 1234567888777777776544444333 44555 65444444344
Q ss_pred CeEEEE
Q 012701 371 MEVRKY 376 (458)
Q Consensus 371 ~~v~~y 376 (458)
+.+..+
T Consensus 194 gnl~~l 199 (321)
T PF03178_consen 194 GNLFVL 199 (321)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 555443
No 103
>PRK13684 Ycf48-like protein; Provisional
Probab=93.72 E-value=7.9 Score=38.33 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=92.4
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC-CCCCceeeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM-NAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
.++..|+.|. ...+++=+=.-.+|+++... ..+...+....++ +.+|+.|.. ..+++=+-.-.+
T Consensus 98 ~~~~~~~~G~-------~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~t 163 (334)
T PRK13684 98 KGDEGWIVGQ-------PSLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKN 163 (334)
T ss_pred cCCcEEEeCC-------CceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCC
Confidence 4556677662 22344422223589987532 2222333333333 445655432 223333334568
Q ss_pred EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEE-EECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 278 WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEE-YDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~-yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
|+.+.... .-..+.+....+..|++.|..+ .++. .|....+|+.+.. +....-. .+
T Consensus 164 W~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg~tW~~~~~-~~~~~l~--------------~i 220 (334)
T PRK13684 164 WEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQTAWTPHQR-NSSRRLQ--------------SM 220 (334)
T ss_pred ceeCcCCC-cceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCCCeEEEeeC-CCcccce--------------ee
Confidence 99876533 2233444444444455444331 1222 2445567998754 2222222 23
Q ss_pred EE-ECCEEEEEEcCCCeEEEE--eCCCCceEEeccCCCccCCCCccc-EEEE-EeCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 357 AV-VNNELYAADYADMEVRKY--DKERRLWFTIGRLPERANSMNGWG-LAFR-ACGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 357 ~~-~~~~lyv~gg~~~~v~~y--d~~~~~W~~v~~lp~~~~~~~~~~-~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
+. -++.++++|.. +.+ .+ +-...+|+.+. .|....+ ++ +++. ..++.++++|... .++..
T Consensus 221 ~~~~~g~~~~vg~~-G~~-~~~s~d~G~sW~~~~-~~~~~~~---~~l~~v~~~~~~~~~~~G~~G---------~v~~S 285 (334)
T PRK13684 221 GFQPDGNLWMLARG-GQI-RFNDPDDLESWSKPI-IPEITNG---YGYLDLAYRTPGEIWAGGGNG---------TLLVS 285 (334)
T ss_pred eEcCCCCEEEEecC-CEE-EEccCCCCCcccccc-CCccccc---cceeeEEEcCCCCEEEEcCCC---------eEEEe
Confidence 33 36788888643 333 34 23346899764 3422211 11 2222 2366788887531 12333
Q ss_pred CCCCCCceEeec
Q 012701 432 SEGPPQWNLLAR 443 (458)
Q Consensus 432 ~~~~~~W~~l~~ 443 (458)
.....+|+.+..
T Consensus 286 ~d~G~tW~~~~~ 297 (334)
T PRK13684 286 KDGGKTWEKDPV 297 (334)
T ss_pred CCCCCCCeECCc
Confidence 344568988753
No 104
>PRK13684 Ycf48-like protein; Provisional
Probab=93.68 E-value=8 Score=38.27 Aligned_cols=164 Identities=14% Similarity=0.141 Sum_probs=83.7
Q ss_pred eEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEE-EeCCCCcEEEcCCCCCCCcceeEEE-E
Q 012701 219 VIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEM-YNSETQTWKVLPSMKNPRKMCSGVF-M 296 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~-~ 296 (458)
.+++=+-.-.+|+.+.... .-..+.+....+..|++.|..+ .++. .|....+|+.++. +..+....++. -
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~ 224 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQP 224 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcC
Confidence 4555444557999875433 2233444545454555555432 1222 2444567998854 33444444443 4
Q ss_pred CCEEEEEccccCCCCcccceEEEEE--CCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeE
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYD--LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEV 373 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd--~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v 373 (458)
+++++++|... ...+. -.-.+|+.+.. |...... ....++.. ++.+|++|. .+.+
T Consensus 225 ~g~~~~vg~~G---------~~~~~s~d~G~sW~~~~~-~~~~~~~-----------~l~~v~~~~~~~~~~~G~-~G~v 282 (334)
T PRK13684 225 DGNLWMLARGG---------QIRFNDPDDLESWSKPII-PEITNGY-----------GYLDLAYRTPGEIWAGGG-NGTL 282 (334)
T ss_pred CCCEEEEecCC---------EEEEccCCCCCccccccC-Ccccccc-----------ceeeEEEcCCCCEEEEcC-CCeE
Confidence 78888886432 12231 22357987642 2111111 00023333 667888864 4455
Q ss_pred EEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 374 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 374 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
..-.....+|+.+...+.... .+...+...++++|+.|.
T Consensus 283 ~~S~d~G~tW~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 283 LVSKDGGKTWEKDPVGEEVPS---NFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred EEeCCCCCCCeECCcCCCCCc---ceEEEEEeCCCceEEECC
Confidence 555555679999753211111 122334445778888885
No 105
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.60 E-value=9.8 Score=39.06 Aligned_cols=146 Identities=8% Similarity=-0.110 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..+|++|+.+++.+.+...+..-....-.-.+.+|++....++ ...++.+|..++.-+.+...+.. .......-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~-~~~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAI-DTSPSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCc-cCceeEcCC
Confidence 5799999999988877655432222221122445655543332 25789999999887777543321 111222335
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEc--CCCeEE
Q 012701 298 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADY--ADMEVR 374 (458)
Q Consensus 298 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg--~~~~v~ 374 (458)
|+-.++.... .....++.+|..+...+.+.... ..... ....-+| .|++... ....++
T Consensus 301 G~~i~f~s~~----~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~--------------~~~SpdG~~ia~~~~~~~~~~i~ 361 (435)
T PRK05137 301 GSQIVFESDR----SGSPQLYVMNADGSNPRRISFGG-GRYST--------------PVWSPRGDLIAFTKQGGGQFSIG 361 (435)
T ss_pred CCEEEEEECC----CCCCeEEEEECCCCCeEEeecCC-CcccC--------------eEECCCCCEEEEEEcCCCceEEE
Confidence 5543343211 11246889998887777665321 11111 1122244 4444432 224788
Q ss_pred EEeCCCCceEEec
Q 012701 375 KYDKERRLWFTIG 387 (458)
Q Consensus 375 ~yd~~~~~W~~v~ 387 (458)
.+|+.++..+.+.
T Consensus 362 ~~d~~~~~~~~lt 374 (435)
T PRK05137 362 VMKPDGSGERILT 374 (435)
T ss_pred EEECCCCceEecc
Confidence 9998777766554
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.49 E-value=6 Score=36.23 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=66.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
+.+++.++ ....+.+||+.+.+-...-. .....-.+..... +.+++.|..+ ..+.+||..+.+-
T Consensus 105 ~~~~~~~~------~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~-- 169 (289)
T cd00200 105 GRILSSSS------RDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKC-- 169 (289)
T ss_pred CCEEEEec------CCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEcccccc--
Confidence 35665554 23568899987554322111 1111112222333 3444443323 4588888875431
Q ss_pred cCCCCCCC-cceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 281 LPSMKNPR-KMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 281 ~~~~p~~r-~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
+..+.... ....... -+++.+++++.+ ..+.+||+.+.+....-. .....-. .++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~~-~~~~~i~--------------~~~~ 227 (289)
T cd00200 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSD-------GTIKLWDLSTGKCLGTLR-GHENGVN--------------SVAF 227 (289)
T ss_pred ceeEecCccccceEEECCCcCEEEEecCC-------CcEEEEECCCCceecchh-hcCCceE--------------EEEE
Confidence 11111111 1122222 244455555433 357889987643322110 1110111 2333
Q ss_pred EC-CEEEEEEcCCCeEEEEeCCCC
Q 012701 359 VN-NELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 359 ~~-~~lyv~gg~~~~v~~yd~~~~ 381 (458)
.. +.+++.+...+.+..||..+.
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCc
Confidence 33 566666655889999998764
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.41 E-value=8 Score=39.29 Aligned_cols=147 Identities=11% Similarity=0.027 Sum_probs=78.8
Q ss_pred ccceEEEEecCCCcEEeCCC-CCCCcc-----ccccC---ceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC
Q 012701 164 HLLEWEAFDPIRRRWMHLPR-MTSNEC-----FMCSD---KESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM 234 (458)
Q Consensus 164 ~~~~~~~yDp~~~~W~~l~~-~p~~~~-----~~~~~---~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 234 (458)
..-+++.|||.+.+-+++.- +|..|. +.... --.+.+++..+++= .....++.++..+-=-+++
T Consensus 285 ~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V-------SRGkaFi~~~~~~~~iqv~ 357 (668)
T COG4946 285 NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV-------SRGKAFIMRPWDGYSIQVG 357 (668)
T ss_pred cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE-------ecCcEEEECCCCCeeEEcC
Confidence 34579999999998877641 222211 10000 00122334444332 2223566655433223333
Q ss_pred CCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCccc
Q 012701 235 RMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 235 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
.-. |..+.-...++.-.|+|-.++ +.+.+||..+..-+.+.. +..+...-.+.-+||..+++-. .
T Consensus 358 ~~~--~VrY~r~~~~~e~~vigt~dg-----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK~~vvaNd-------r 422 (668)
T COG4946 358 KKG--GVRYRRIQVDPEGDVIGTNDG-----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGKKVVVAND-------R 422 (668)
T ss_pred CCC--ceEEEEEccCCcceEEeccCC-----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCcEEEEEcC-------c
Confidence 222 222333333444667776654 468999999987665532 3344444445567786666432 2
Q ss_pred ceEEEEECCCCceEEcCC
Q 012701 315 TCGEEYDLETETWTEIPN 332 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~ 332 (458)
-.++++|+.++.=+.+..
T Consensus 423 ~el~vididngnv~~idk 440 (668)
T COG4946 423 FELWVIDIDNGNVRLIDK 440 (668)
T ss_pred eEEEEEEecCCCeeEecc
Confidence 368899999988777653
No 108
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.32 E-value=11 Score=38.72 Aligned_cols=147 Identities=11% Similarity=-0.025 Sum_probs=79.4
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
...++++|..+++-+.+...+.........--+.+|++....++ ...++++|+.++.-+.+..-... .......-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGI-DTEPTWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCC-ccceEECC
Confidence 35799999999887777655422111111112445655543332 25799999999887766532211 11112233
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCC--Ce
Q 012701 297 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYAD--ME 372 (458)
Q Consensus 297 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~--~~ 372 (458)
+|+ |++.....+ ...++.+|..++..+.+..- ..... . ....-++ .|++..... ..
T Consensus 302 DG~~l~f~sd~~g-----~~~iy~~dl~~g~~~~lt~~--g~~~~------------~-~~~SpDG~~Ia~~~~~~~~~~ 361 (433)
T PRK04922 302 DGKSIYFTSDRGG-----RPQIYRVAASGGSAERLTFQ--GNYNA------------R-ASVSPDGKKIAMVHGSGGQYR 361 (433)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCeEEeecC--CCCcc------------C-EEECCCCCEEEEEECCCCcee
Confidence 555 443322221 23688899988888776521 11111 0 1122244 455543322 36
Q ss_pred EEEEeCCCCceEEecc
Q 012701 373 VRKYDKERRLWFTIGR 388 (458)
Q Consensus 373 v~~yd~~~~~W~~v~~ 388 (458)
|+++|+.++..+.+..
T Consensus 362 I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 362 IAVMDLSTGSVRTLTP 377 (433)
T ss_pred EEEEECCCCCeEECCC
Confidence 9999999988887653
No 109
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.15 E-value=6.1 Score=35.67 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEE-----e----ccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFT-----I----GRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~-----v----~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
++++|++-| +..++||..+++... + ..+|... -.|+...++++|+|-|.
T Consensus 110 ~~~~yfFkg--~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i------daa~~~~~~~~yfF~g~ 167 (194)
T cd00094 110 NGKTYFFKG--DKYWRYDEKTQKMDPGYPKLIETDFPGVPDKV------DAAFRWLDGYYYFFKGD 167 (194)
T ss_pred CCEEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCcCCCc------ceeEEeCCCcEEEEECC
Confidence 689999955 789999976654321 1 1222221 14444444899999884
No 110
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=6.6 Score=35.72 Aligned_cols=185 Identities=15% Similarity=0.100 Sum_probs=111.5
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCC-ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPR-CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
.....+++||..-|.. ..+.+.++|..+++=..-.+++.++ .+-+.+.+++.+|..-=.+ .-.+.||+.
T Consensus 50 GL~~~~g~i~esTG~y----g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~ 119 (262)
T COG3823 50 GLEYLDGHILESTGLY----GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKE------GVAFKYDAD 119 (262)
T ss_pred ceeeeCCEEEEecccc----ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecc------ceeEEEChH
Confidence 3455688888876653 3457899999877533222333233 4457888899999983322 345677766
Q ss_pred CCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCce---EEc--CCCCCCCCCCCCCCCCCCC
Q 012701 275 TQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW---TEI--PNMSPARGGAARGTEMPAS 349 (458)
Q Consensus 275 t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W---~~i--~~~p~~r~~~~~~~~~~~~ 349 (458)
+ .+.+...+.+-.+.+.+.-+..|.+--|.. .+..-||++-.= ..+ ...|...-.
T Consensus 120 t--~~~lg~~~y~GeGWgLt~d~~~LimsdGsa--------tL~frdP~tfa~~~~v~VT~~g~pv~~LN---------- 179 (262)
T COG3823 120 T--LEELGRFSYEGEGWGLTSDDKNLIMSDGSA--------TLQFRDPKTFAELDTVQVTDDGVPVSKLN---------- 179 (262)
T ss_pred H--hhhhcccccCCcceeeecCCcceEeeCCce--------EEEecCHHHhhhcceEEEEECCeeccccc----------
Confidence 4 455666666666777777777766654432 344445553210 001 111211111
Q ss_pred cCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc---eEEeccCCCccCCCC-----cccEEEEEeCCEEEEEcC
Q 012701 350 AEAPPLVAVVNNELYAADYADMEVRKYDKERRL---WFTIGRLPERANSMN-----GWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 350 ~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~---W~~v~~lp~~~~~~~-----~~~~a~~~~~~~lyv~GG 415 (458)
-+-.++|.||+==.....|.+.|+++++ |-.+..++....... --|.|.....+++|+.|=
T Consensus 180 -----ELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 180 -----ELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred -----ceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 2455688888866677899999999974 888877654322111 124666666789999883
No 111
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.68 E-value=17 Score=39.17 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=80.7
Q ss_pred eeEEEeC--CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEE
Q 012701 243 FGSASLG--EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEY 320 (458)
Q Consensus 243 ~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~y 320 (458)
-..++++ |.-..+|+.. +..+.+|+-.+.+...-..-...+..+....-||++.+.|+.++ .|-+|
T Consensus 310 I~t~~~N~tGDWiA~g~~k-----lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-------KVKvW 377 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSK-----LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-------KVKVW 377 (893)
T ss_pred eeEEEecccCCEEEEcCCc-----cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-------cEEEE
Confidence 3344444 5555555532 45677888777766544333344555445556899999988762 46677
Q ss_pred ECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC-ceEEeccCCCccCCCCc
Q 012701 321 DLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR-LWFTIGRLPERANSMNG 398 (458)
Q Consensus 321 d~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~-~W~~v~~lp~~~~~~~~ 398 (458)
|..+..- ..+.. .-++. ........++..+--..++.|..||...- ..+... .|.+..
T Consensus 378 n~~SgfC~vTFte---Hts~V------------t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft-~P~p~Q---- 437 (893)
T KOG0291|consen 378 NTQSGFCFVTFTE---HTSGV------------TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT-SPEPIQ---- 437 (893)
T ss_pred eccCceEEEEecc---CCCce------------EEEEEEecCCEEEEeecCCeEEeeeecccceeeeec-CCCcee----
Confidence 7766432 22221 11221 00122335555555456678999998763 355443 344443
Q ss_pred ccEEEEEeC--CEEEEEcCCCCC
Q 012701 399 WGLAFRACG--DRLIVIGGPKAS 419 (458)
Q Consensus 399 ~~~a~~~~~--~~lyv~GG~~~~ 419 (458)
+++++++ |.|++.|+.+..
T Consensus 438 --fscvavD~sGelV~AG~~d~F 458 (893)
T KOG0291|consen 438 --FSCVAVDPSGELVCAGAQDSF 458 (893)
T ss_pred --eeEEEEcCCCCEEEeeccceE
Confidence 5666777 888888886543
No 112
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=92.38 E-value=9.6 Score=36.04 Aligned_cols=180 Identities=15% Similarity=0.119 Sum_probs=103.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcC-----CCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSIL-----TNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
++++|++.+.. .+.++.|.-. .++..+.-.||.+-.+.+.+++++.+|.--. ....+.+||+.+
T Consensus 30 ~~~iy~~~~~~-----~~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t 98 (250)
T PF02191_consen 30 SEKIYVTSGFS-----GNTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTT 98 (250)
T ss_pred CCCEEEECccC-----CCEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECcC
Confidence 56788887763 2356666433 3344444456777778888899998887733 257899999999
Q ss_pred CcEE---EcCCCCCC------Ccc---eeEEEECCEEEEEccccCCCCcccceEEEEECCC----CceEEcCCCCCCCCC
Q 012701 276 QTWK---VLPSMKNP------RKM---CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET----ETWTEIPNMSPARGG 339 (458)
Q Consensus 276 ~~W~---~~~~~p~~------r~~---~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~----~~W~~i~~~p~~r~~ 339 (458)
++-. .++..... ... .-.++-..-|+|+-....... .-.+-..|+.+ .+|.. ..+....+
T Consensus 99 ~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g--~ivvskld~~tL~v~~tw~T--~~~k~~~~ 174 (250)
T PF02191_consen 99 RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG--NIVVSKLDPETLSVEQTWNT--SYPKRSAG 174 (250)
T ss_pred CcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC--cEEEEeeCcccCceEEEEEe--ccCchhhc
Confidence 8744 45432111 111 223344455777744332211 12344556654 34653 34444433
Q ss_pred CCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe---CCEEEE
Q 012701 340 AARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC---GDRLIV 412 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~---~~~lyv 412 (458)
.+.++-|.||++.... .-.+.||..+++=..+. ++...... .++.... +.+||+
T Consensus 175 ---------------naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~-i~f~~~~~---~~~~l~YNP~dk~LY~ 235 (250)
T PF02191_consen 175 ---------------NAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVS-IPFPNPYG---NISMLSYNPRDKKLYA 235 (250)
T ss_pred ---------------ceeeEeeEEEEEEECCCCCcEEEEEEECCCCceecee-eeeccccC---ceEeeeECCCCCeEEE
Confidence 3677889999997543 23478999988766543 44333211 2334433 568888
Q ss_pred Ec
Q 012701 413 IG 414 (458)
Q Consensus 413 ~G 414 (458)
.-
T Consensus 236 wd 237 (250)
T PF02191_consen 236 WD 237 (250)
T ss_pred EE
Confidence 75
No 113
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=92.28 E-value=17 Score=38.40 Aligned_cols=114 Identities=15% Similarity=0.176 Sum_probs=67.7
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCC--------cceeEEEECCEEEEEccccCCCCcc
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPR--------KMCSGVFMDGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~g~lyv~GG~~~~~~~~ 313 (458)
+-++.++.||+... ...++.+|..|++ |+.-...+... .....++.+++||+... +
T Consensus 64 tPvv~~g~vyv~s~-------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d------ 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTS-------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D------ 129 (527)
T ss_pred CCEEECCEEEEECC-------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C------
Confidence 34567899998643 2358899998875 88654332111 11234567888887432 1
Q ss_pred cceEEEEECCCCc--eEEcC-CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEc-----CCCeEEEEeCCCCc--e
Q 012701 314 LTCGEEYDLETET--WTEIP-NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADY-----ADMEVRKYDKERRL--W 383 (458)
Q Consensus 314 ~~~v~~yd~~~~~--W~~i~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg-----~~~~v~~yd~~~~~--W 383 (458)
..++.+|.++.+ |+.-. .+... .. ...+.++.++.||+-.. ..+.|..||.++++ |
T Consensus 130 -g~l~ALDa~TGk~~W~~~~~~~~~~-~~------------~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 130 -ARLVALDAKTGKVVWSKKNGDYKAG-YT------------ITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred -CEEEEEECCCCCEEeeccccccccc-cc------------ccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 358899998776 76532 11111 00 01134667888877532 24689999998864 7
Q ss_pred EE
Q 012701 384 FT 385 (458)
Q Consensus 384 ~~ 385 (458)
+.
T Consensus 196 ~~ 197 (527)
T TIGR03075 196 RR 197 (527)
T ss_pred ec
Confidence 53
No 114
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.23 E-value=15 Score=37.59 Aligned_cols=143 Identities=8% Similarity=0.054 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
..+|++|+.|++=+.+...+..- ......- +.+|.+.-..++ ...++.+|..++.++++...+. ........-
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SP 286 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG-IDVNGNFVE 286 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC-ccCccEECC
Confidence 48999999988766665432211 1112222 345655543332 3689999999999998865443 111112233
Q ss_pred CC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE-EEEEEcC-----
Q 012701 297 DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADYA----- 369 (458)
Q Consensus 297 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~gg~----- 369 (458)
|| +||+..... ....++++|+.+++.+.+..-. .. . ....-+|+ |......
T Consensus 287 DG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g--~~-~--------------~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 287 DDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHG--KN-N--------------SSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCC--Cc-C--------------ceECCCCCEEEEEEcCCCccc
Confidence 45 576664332 2247899999998887765311 11 1 11222333 3333221
Q ss_pred ---CCeEEEEeCCCCceEEecc
Q 012701 370 ---DMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 370 ---~~~v~~yd~~~~~W~~v~~ 388 (458)
..+++++|++++.++.+..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCC
Confidence 1479999999999988865
No 115
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.94 E-value=11 Score=35.54 Aligned_cols=156 Identities=15% Similarity=0.110 Sum_probs=88.3
Q ss_pred ceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC------------CceeeEEEeCCEEEEEeccCCCC
Q 012701 195 KESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP------------RCLFGSASLGEIAILAGGSDLEG 262 (458)
Q Consensus 195 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~------------r~~~~~~~~~~~lyv~GG~~~~~ 262 (458)
...++.+|.+|.--. .+..|.+||+.+++=.....||.+ -...-.++..+-|+|+-......
T Consensus 72 tG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred CCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 344667777776542 457899999999865422223222 22245555667788886554332
Q ss_pred CccCeEEEEeCCC----CcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC-CCCCC
Q 012701 263 NILSSAEMYNSET----QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN-MSPAR 337 (458)
Q Consensus 263 ~~~~~v~~yd~~t----~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~-~p~~r 337 (458)
. .-.+-..|+.+ .+|.. ..+.+ ....+..+-|.||++-.... ....-.++||+.+++=..+.- ++.+.
T Consensus 146 g-~ivvskld~~tL~v~~tw~T--~~~k~-~~~naFmvCGvLY~~~s~~~---~~~~I~yafDt~t~~~~~~~i~f~~~~ 218 (250)
T PF02191_consen 146 G-NIVVSKLDPETLSVEQTWNT--SYPKR-SAGNAFMVCGVLYATDSYDT---RDTEIFYAFDTYTGKEEDVSIPFPNPY 218 (250)
T ss_pred C-cEEEEeeCcccCceEEEEEe--ccCch-hhcceeeEeeEEEEEEECCC---CCcEEEEEEECCCCceeceeeeecccc
Confidence 1 13455567765 35764 23332 22335567889999976542 123456889999887654431 22222
Q ss_pred CCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcCCCeEEEEeCC
Q 012701 338 GGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~~~~v~~yd~~ 379 (458)
... +...+ +.+||+.. ++....|++.
T Consensus 219 ~~~--------------~~l~YNP~dk~LY~wd--~G~~v~Y~v~ 247 (250)
T PF02191_consen 219 GNI--------------SMLSYNPRDKKLYAWD--NGYQVTYDVR 247 (250)
T ss_pred Cce--------------EeeeECCCCCeEEEEE--CCeEEEEEEE
Confidence 222 23333 67888884 3567777653
No 116
>smart00284 OLF Olfactomedin-like domains.
Probab=91.92 E-value=11 Score=35.52 Aligned_cols=182 Identities=9% Similarity=0.019 Sum_probs=100.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcC----CCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSIL----TNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
.+++|++.+.. ...+.++.|... ..++.+.-.+|.+..+.+.+++++.+|.--. ....+.+||+.++
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~ 104 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTE 104 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCCC
Confidence 46788876542 123456666543 3444444457778888899999999998633 2467999999999
Q ss_pred cEEEcCCCCCCC----c--------ceeEEEECCEEEEEccccCCCCcccceEEEEECCCC----ceEEcCCCCCCCCCC
Q 012701 277 TWKVLPSMKNPR----K--------MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE----TWTEIPNMSPARGGA 340 (458)
Q Consensus 277 ~W~~~~~~p~~r----~--------~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~----~W~~i~~~p~~r~~~ 340 (458)
+-.....+|.+. . ..-.++-.+-|+|+=....... .-.+-..|+.+- +|.. ..+....+
T Consensus 105 ~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g--~ivvSkLnp~tL~ve~tW~T--~~~k~sa~- 179 (255)
T smart00284 105 TYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG--KIVISKLNPATLTIENTWIT--TYNKRSAS- 179 (255)
T ss_pred cEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC--CEEEEeeCcccceEEEEEEc--CCCccccc-
Confidence 764333333221 1 1122344444666532221111 112345666653 4654 33333333
Q ss_pred CCCCCCCCCcCCCCEEEEECCEEEEEEcCC----CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe---CCEEEEE
Q 012701 341 ARGTEMPASAEAPPLVAVVNNELYAADYAD----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC---GDRLIVI 413 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~---~~~lyv~ 413 (458)
-+.++-|.||++.... .-.+.||..+++=.. ..+|..... + .+++.-. +.+||+.
T Consensus 180 --------------naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~n~y--~-~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 180 --------------NAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFENMY--E-YISMLDYNPNDRKLYAW 241 (255)
T ss_pred --------------ccEEEeeEEEEEccCCCCCcEEEEEEECCCCccce-eeeeecccc--c-cceeceeCCCCCeEEEE
Confidence 3677789999996311 236789999876333 334444331 1 1333333 4678876
Q ss_pred c
Q 012701 414 G 414 (458)
Q Consensus 414 G 414 (458)
-
T Consensus 242 d 242 (255)
T smart00284 242 N 242 (255)
T ss_pred e
Confidence 4
No 117
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.83 E-value=15 Score=36.64 Aligned_cols=114 Identities=8% Similarity=-0.105 Sum_probs=63.3
Q ss_pred eeEEEEEecc-----ceEEEEecCCCcEEe-CCCCCCCccccccCceEEEeCCEEEEEcCCC---CCcCccceEEEEEcC
Q 012701 156 EHWVYFSCHL-----LEWEAFDPIRRRWMH-LPRMTSNECFMCSDKESLAVGTELLVFGREL---TAHHISHVIYRYSIL 226 (458)
Q Consensus 156 ~~~l~~~~~~-----~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~~~~~~~v~~yd~~ 226 (458)
.+++|+.... +.+..+|..+.+-.. ++.-..|+ ..+..-+..||+.-.+. ..+...+.|.+||+.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~------~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN------PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc------eeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 3456664332 678889988765432 22212222 11122356888886421 112356789999999
Q ss_pred CCcee-eCCCCCCCCc-------eeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 227 TNSWS-SGMRMNAPRC-------LFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 227 t~~W~-~~~~~p~~r~-------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
|.+=. +++..+.||. .++...-+..|||.-= ...+.+-++|..+++-..
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-----~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-----SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-----CCCCEEEEEECCCCcEEE
Confidence 98753 3332234442 2233333557888711 124789999999887544
No 118
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.79 E-value=30 Score=40.02 Aligned_cols=165 Identities=17% Similarity=0.175 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCC------------------CCCCCceeeEEEe--CCEEEEEeccCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR------------------MNAPRCLFGSASL--GEIAILAGGSDL 260 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~------------------~p~~r~~~~~~~~--~~~lyv~GG~~~ 260 (458)
++.|||.-.. .+.|.++|+.++.=+.+.. +..| +..++. ++.|||....
T Consensus 635 gn~LYVaDt~------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P---~gVa~dp~~g~LyVad~~-- 703 (1057)
T PLN02919 635 KNLLYVADTE------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP---WDVCFEPVNEKVYIAMAG-- 703 (1057)
T ss_pred CCEEEEEeCC------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC---eEEEEecCCCeEEEEECC--
Confidence 4678887532 2568888987766544321 1111 233333 6789988542
Q ss_pred CCCccCeEEEEeCCCCcEEEcCCC----------CC--CCccee-EEEE-C-CEEEEEccccCCCCcccceEEEEECCCC
Q 012701 261 EGNILSSAEMYNSETQTWKVLPSM----------KN--PRKMCS-GVFM-D-GKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 261 ~~~~~~~v~~yd~~t~~W~~~~~~----------p~--~r~~~~-~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
.+.+++||+.++....+..- .. ...... .++. + +.|||....+ +.|.+||+.++
T Consensus 704 ----~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv~D~~tg 772 (1057)
T PLN02919 704 ----QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRALDLKTG 772 (1057)
T ss_pred ----CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEEEECCCC
Confidence 25688899887765433210 00 001112 2222 3 4599875432 57899999876
Q ss_pred ceEEcCC----CCCC--CCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 326 TWTEIPN----MSPA--RGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 326 ~W~~i~~----~p~~--r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
....+.. .+.. ..+...|....+....|..+++. +|.||+....++.|.+||+.++....+.
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 6432210 0110 11100011111112233344443 6789999988999999999998887765
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=7.8 Score=36.08 Aligned_cols=55 Identities=22% Similarity=0.570 Sum_probs=35.6
Q ss_pred eCCCCceEEe--ccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeecc
Q 012701 377 DKERRLWFTI--GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARK 444 (458)
Q Consensus 377 d~~~~~W~~v--~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~ 444 (458)
+.+..+|+.- .++|... |..+....++-|-|-||.+ .+.+|..+. ..+|.+++..
T Consensus 241 ~~e~e~wk~tll~~f~~~~-----w~vSWS~sGn~LaVs~GdN-------kvtlwke~~-~Gkw~~v~~~ 297 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVV-----WRVSWSLSGNILAVSGGDN-------KVTLWKENV-DGKWEEVGEV 297 (299)
T ss_pred cCccCcccccccccCCcce-----EEEEEeccccEEEEecCCc-------EEEEEEeCC-CCcEEEcccc
Confidence 4556788653 4555544 5566666777777777743 466787754 3499998653
No 120
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.49 E-value=16 Score=36.48 Aligned_cols=150 Identities=16% Similarity=0.069 Sum_probs=84.4
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
+..++.+|+.. ....++.+|+.+.+ |+....--..........-+++||+- ..++ .+++||..+
T Consensus 65 ~~~dg~v~~~~-------~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g------~~y~ld~~~ 130 (370)
T COG1520 65 ADGDGTVYVGT-------RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG------KLYALDAST 130 (370)
T ss_pred EeeCCeEEEec-------CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc------eEEEEECCC
Confidence 56788999872 22368999999987 86543210011111112226776555 3332 688999966
Q ss_pred C--cEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCC--ceEEcCCC--CCCCCCCCCCCCCCCC
Q 012701 276 Q--TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNM--SPARGGAARGTEMPAS 349 (458)
Q Consensus 276 ~--~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~i~~~--p~~r~~~~~~~~~~~~ 349 (458)
+ .|+.-.... ++..-..++.++.+|+.. ....++.+|..+. .|+.-... +....+
T Consensus 131 G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s--------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~---------- 191 (370)
T COG1520 131 GTLVWSRNVGGS-PYYASPPVVGDGTVYVGT--------DDGHLYALNADTGTLKWTYETPAPLSLSIYG---------- 191 (370)
T ss_pred CcEEEEEecCCC-eEEecCcEEcCcEEEEec--------CCCeEEEEEccCCcEEEEEecCCcccccccc----------
Confidence 5 487654432 333334456677777763 1134677777654 48743322 222222
Q ss_pred cCCCCEEEEECCEEEEEEcC-CCeEEEEeCCCC--ceEE
Q 012701 350 AEAPPLVAVVNNELYAADYA-DMEVRKYDKERR--LWFT 385 (458)
Q Consensus 350 ~~~~~~~~~~~~~lyv~gg~-~~~v~~yd~~~~--~W~~ 385 (458)
..+..++.+|+-... ...++.+|+.++ .|..
T Consensus 192 -----~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 192 -----SPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -----CceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 233567777776432 457999999776 4774
No 121
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.20 E-value=28 Score=38.58 Aligned_cols=166 Identities=14% Similarity=0.135 Sum_probs=82.5
Q ss_pred eeEEEEEeccceEEEEecCCC--cEEeCCCCCCCc--cc-cccCce----------------EEEeCCEEEEEcCCCCCc
Q 012701 156 EHWVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNE--CF-MCSDKE----------------SLAVGTELLVFGRELTAH 214 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~--~~-~~~~~~----------------~~~~~~~lyv~GG~~~~~ 214 (458)
...+|++.....++++|+.++ .|..-+..+... .. .|.+.+ .+..+++||+-.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T------ 267 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT------ 267 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec------
Confidence 335677666778889998876 587655444221 00 010000 012344555432
Q ss_pred CccceEEEEEcCCCc--eee-----------CCCCCCCC--ceeeEEEeCCEEEEEeccCCCC----CccCeEEEEeCCC
Q 012701 215 HISHVIYRYSILTNS--WSS-----------GMRMNAPR--CLFGSASLGEIAILAGGSDLEG----NILSSAEMYNSET 275 (458)
Q Consensus 215 ~~~~~v~~yd~~t~~--W~~-----------~~~~p~~r--~~~~~~~~~~~lyv~GG~~~~~----~~~~~v~~yd~~t 275 (458)
....++.+|..|++ |.. ++..+... ....-++.++.||+ |+...+. .....+..||..|
T Consensus 268 -~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 268 -SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred -CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEEECCC
Confidence 23456777777664 432 11112111 12233556777766 4432111 2246789999999
Q ss_pred Cc--EEEcC--C-----CCCC----Ccc---eeEEEE---CCEEEEEcccc----------CCCCcccceEEEEECCCCc
Q 012701 276 QT--WKVLP--S-----MKNP----RKM---CSGVFM---DGKFYVIGGIG----------GSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 276 ~~--W~~~~--~-----~p~~----r~~---~~~~~~---~g~lyv~GG~~----------~~~~~~~~~v~~yd~~~~~ 326 (458)
++ |+.-. + ++.. +.. .....+ .|.+|+=-|.. .....+..++...|++|.+
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 86 76421 1 1111 010 012233 35677643321 1123466789999998765
Q ss_pred --eEE
Q 012701 327 --WTE 329 (458)
Q Consensus 327 --W~~ 329 (458)
|..
T Consensus 426 ~~W~~ 430 (764)
T TIGR03074 426 ERWVF 430 (764)
T ss_pred eEEEe
Confidence 764
No 122
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.15 E-value=19 Score=36.61 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=56.6
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCCce-eeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
..+|+|++.|+. +..|-+||..+..- +.+-.-..|-..---...++.+++.|+-+ ..+..+|..+..
T Consensus 77 R~DG~LlaaGD~------sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd------~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 77 RSDGRLLAAGDE------SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD------KVVKYWDLSTAY 144 (487)
T ss_pred ecCCeEEEccCC------cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC------ceEEEEEcCCcE
Confidence 347999999964 45688999544211 11111011111111123578888887733 234445555544
Q ss_pred EEEcCCCCCC---CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 278 WKVLPSMKNP---RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 278 W~~~~~~p~~---r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
. ...+... ....+....++.|++.|||++ .|-.||+.+.+
T Consensus 145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-------~vrl~DtR~~~ 187 (487)
T KOG0310|consen 145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDG-------KVRLWDTRSLT 187 (487)
T ss_pred -E-EEEecCCcceeEeeccccCCCeEEEecCCCc-------eEEEEEeccCC
Confidence 2 1111111 111122245788999999983 46778888773
No 123
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.73 E-value=17 Score=35.43 Aligned_cols=219 Identities=15% Similarity=0.088 Sum_probs=103.4
Q ss_pred EEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCce-eeCCCC
Q 012701 160 YFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMRM 236 (458)
Q Consensus 160 ~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~ 236 (458)
++......++.|||.+++=...+ +|... .+...+ ++.|.+. .+.++.+++.+..- +.+...
T Consensus 41 w~DI~~~~i~r~~~~~g~~~~~~-~p~~~------~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 41 WVDILGGRIHRLDPETGKKRVFP-SPGGF------SSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred EEeCCCCeEEEecCCcCceEEEE-CCCCc------ccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccc
Confidence 33344567888998865433222 11111 112233 3344433 23456677654433 444332
Q ss_pred ----CCCCceeeEEEeCCEEEEEecc-----CCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC-EEEEEccc
Q 012701 237 ----NAPRCLFGSASLGEIAILAGGS-----DLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG-KFYVIGGI 306 (458)
Q Consensus 237 ----p~~r~~~~~~~~~~~lyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g-~lyv~GG~ 306 (458)
+.-|..=+.+--.+.+|+---. ....+....+++||+. +..+.+..-.....+.-+..-++ .+|+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~a--- 180 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVA--- 180 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEE---
Confidence 3334444444445666554222 1112345579999994 55554432222223333334466 56665
Q ss_pred cCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE-EEECCEEEEEEcC-CCeEEEEeCCCCceE
Q 012701 307 GGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV-AVVNNELYAADYA-DMEVRKYDKERRLWF 384 (458)
Q Consensus 307 ~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~gg~-~~~v~~yd~~~~~W~ 384 (458)
....+.+++|+... ..+.. ..+... .......+.|-.+ +-.+|.||+.... ...|.+|+++.+.=.
T Consensus 181 ----DT~~~~i~r~~~d~---~~g~~--~~~~~~---~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 181 ----DTPANRIHRYDLDP---ATGPI--GGRRGF---VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLG 248 (307)
T ss_pred ----eCCCCeEEEEecCc---ccCcc--CCcceE---EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEE
Confidence 23446678887764 11110 000000 0000011222234 4458899965433 359999999843333
Q ss_pred EeccCCCccCCCCcccEEEEEeC---CEEEEEcCCC
Q 012701 385 TIGRLPERANSMNGWGLAFRACG---DRLIVIGGPK 417 (458)
Q Consensus 385 ~v~~lp~~~~~~~~~~~a~~~~~---~~lyv~GG~~ 417 (458)
.+ .+|....+ .++..+ +.|||.....
T Consensus 249 ~i-~lP~~~~t------~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 249 EI-KLPVKRPT------NPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EE-ECCCCCCc------cceEeCCCcCEEEEEecCC
Confidence 33 56654332 222233 7889887654
No 124
>PTZ00421 coronin; Provisional
Probab=90.50 E-value=25 Score=36.86 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCcee-----eCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEe
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWS-----SGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-----~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd 272 (458)
++.+++.|+. ...|.+||..++... .+..+..-.....++.+ ++.+++.||.+ ..+.+||
T Consensus 87 d~~~LaSgS~------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D------gtVrIWD 154 (493)
T PTZ00421 87 DPQKLFTASE------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD------MVVNVWD 154 (493)
T ss_pred CCCEEEEEeC------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC------CEEEEEE
Confidence 3456666643 346788887664321 11111111111122222 23577777765 4588899
Q ss_pred CCCCcEEEcCCCCCCCc-ceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 273 SETQTWKVLPSMKNPRK-MCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 273 ~~t~~W~~~~~~p~~r~-~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
..+++-.. .+..... -.+.+ ..++.+++.|+.+ ..+.+||+.+.+
T Consensus 155 l~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~ 201 (493)
T PTZ00421 155 VERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGT 201 (493)
T ss_pred CCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC-------CEEEEEECCCCc
Confidence 98775221 1111111 11222 2377888887765 357889998765
No 125
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.27 E-value=22 Score=35.90 Aligned_cols=101 Identities=10% Similarity=-0.050 Sum_probs=57.0
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
..+++||..++.-..+...+..... ....-+|+ |++..... ....++.+|+.++..+.+..........
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~~---- 283 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTEP---- 283 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCCE----
Confidence 5799999999877666544322221 22233554 55543322 1246899999988877765432111111
Q ss_pred CCCCCcCCCCEEEEECC-EEEEEEcC--CCeEEEEeCCCCceEEec
Q 012701 345 EMPASAEAPPLVAVVNN-ELYAADYA--DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~lyv~gg~--~~~v~~yd~~~~~W~~v~ 387 (458)
...-++ .|++.... ...|+.+|..++.++.+.
T Consensus 284 -----------~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 284 -----------SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred -----------EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 111244 44444322 247999999988887764
No 126
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.22 E-value=23 Score=38.23 Aligned_cols=58 Identities=24% Similarity=0.162 Sum_probs=40.1
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC--CEEEEEcCCCCCcCccceEEEEEcCCCceeeC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG--TELLVFGRELTAHHISHVIYRYSILTNSWSSG 233 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 233 (458)
-.+.++|....+=.+--..|.|..+. .++++ |.|.+.|+.+ .=.+++++..|++--.+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Qfs-----cvavD~sGelV~AG~~d-----~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQFS-----CVAVDPSGELVCAGAQD-----SFEIFVWSVQTGQLLDI 473 (893)
T ss_pred CeEEeeeecccceeeeecCCCceeee-----EEEEcCCCCEEEeeccc-----eEEEEEEEeecCeeeeh
Confidence 35667787777666655666666443 37777 8899998763 33689999999876443
No 127
>PRK05137 tolB translocation protein TolB; Provisional
Probab=90.11 E-value=24 Score=36.13 Aligned_cols=145 Identities=9% Similarity=-0.087 Sum_probs=74.4
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
...+++.|.....=+.+..-..+ .......-+ .+|+.+.-.++ ...++++|+.+++.+.+...+.... .....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g----~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~S 254 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG----RPRVYLLDLETGQRELVGNFPGMTF-APRFS 254 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC----CCEEEEEECCCCcEEEeecCCCccc-CcEEC
Confidence 56788888765433333221111 111111123 34443322221 2679999999998887765443211 12223
Q ss_pred ECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE-EEEEEc--CCC
Q 012701 296 MDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADY--ADM 371 (458)
Q Consensus 296 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~gg--~~~ 371 (458)
-+|+ |++....+ ....++.+|+.+..-..+...+..... ....-+++ |+.... ...
T Consensus 255 PDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~~~~---------------~~~spDG~~i~f~s~~~g~~ 314 (435)
T PRK05137 255 PDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAIDTS---------------PSYSPDGSQIVFESDRSGSP 314 (435)
T ss_pred CCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCccCc---------------eeEcCCCCEEEEEECCCCCC
Confidence 3564 44443222 124689999998887776543211111 11222443 443321 125
Q ss_pred eEEEEeCCCCceEEec
Q 012701 372 EVRKYDKERRLWFTIG 387 (458)
Q Consensus 372 ~v~~yd~~~~~W~~v~ 387 (458)
.++++|..+...+.+.
T Consensus 315 ~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 315 QLYVMNADGSNPRRIS 330 (435)
T ss_pred eEEEEECCCCCeEEee
Confidence 7999998888777765
No 128
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=89.65 E-value=9.6 Score=38.25 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=69.7
Q ss_pred CcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEE-
Q 012701 288 RKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYA- 365 (458)
Q Consensus 288 r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv- 365 (458)
....+++++ ||.||..|-.+ ..+-+||+++.. .++.+|. ..+. -..+...+|.-|+
T Consensus 348 v~~ts~~fHpDgLifgtgt~d-------~~vkiwdlks~~--~~a~Fpg-ht~~------------vk~i~FsENGY~La 405 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPD-------GVVKIWDLKSQT--NVAKFPG-HTGP------------VKAISFSENGYWLA 405 (506)
T ss_pred ceeEEeeEcCCceEEeccCCC-------ceEEEEEcCCcc--ccccCCC-CCCc------------eeEEEeccCceEEE
Confidence 345556665 67777766543 346789998876 5555554 2222 0133334444444
Q ss_pred EEcCCCeEEEEeCCCCc-eEEeccCCCccCCCCcccEEEEEe--CCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEee
Q 012701 366 ADYADMEVRKYDKERRL-WFTIGRLPERANSMNGWGLAFRAC--GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLA 442 (458)
Q Consensus 366 ~gg~~~~v~~yd~~~~~-W~~v~~lp~~~~~~~~~~~a~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~ 442 (458)
.+..+..|..||+.... ...++ ++.. ++...... -|...+++|. ++.+|.+...+-+|+.+.
T Consensus 406 t~add~~V~lwDLRKl~n~kt~~-l~~~------~~v~s~~fD~SGt~L~~~g~--------~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 406 TAADDGSVKLWDLRKLKNFKTIQ-LDEK------KEVNSLSFDQSGTYLGIAGS--------DLQVYICKKKTKSWTEIK 470 (506)
T ss_pred EEecCCeEEEEEehhhcccceee-cccc------ccceeEEEcCCCCeEEeecc--------eeEEEEEecccccceeee
Confidence 45455669999987654 22222 2221 12222222 3566667763 577888888889999997
Q ss_pred ccC
Q 012701 443 RKQ 445 (458)
Q Consensus 443 ~~p 445 (458)
.++
T Consensus 471 ~~~ 473 (506)
T KOG0289|consen 471 ELA 473 (506)
T ss_pred hhh
Confidence 654
No 129
>PRK02889 tolB translocation protein TolB; Provisional
Probab=89.43 E-value=27 Score=35.72 Aligned_cols=145 Identities=10% Similarity=-0.062 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
..+|++|..+++=..+...+.... .....- +.+|++....++ ...++.+|..++..+.+..-.. ........-
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSp 293 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSP 293 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCcCeEEcC
Confidence 469999998886655544332111 111222 345655444332 2578899998877666643221 111122233
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCC--CeE
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYAD--MEV 373 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~--~~v 373 (458)
||+..++..... ....++.+|..+...+.+..- ..... . ....-+| .|+...... ..|
T Consensus 294 DG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~--g~~~~------------~-~~~SpDG~~Ia~~s~~~g~~~I 354 (427)
T PRK02889 294 DGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFT--GSYNT------------S-PRISPDGKLLAYISRVGGAFKL 354 (427)
T ss_pred CCCEEEEEecCC----CCcEEEEEECCCCceEEEecC--CCCcC------------c-eEECCCCCEEEEEEccCCcEEE
Confidence 565333322111 123678888887777665421 11111 0 1122244 444333222 369
Q ss_pred EEEeCCCCceEEec
Q 012701 374 RKYDKERRLWFTIG 387 (458)
Q Consensus 374 ~~yd~~~~~W~~v~ 387 (458)
+++|..++..+.+.
T Consensus 355 ~v~d~~~g~~~~lt 368 (427)
T PRK02889 355 YVQDLATGQVTALT 368 (427)
T ss_pred EEEECCCCCeEEcc
Confidence 99999988877764
No 130
>smart00284 OLF Olfactomedin-like domains.
Probab=89.43 E-value=19 Score=33.99 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=86.8
Q ss_pred CceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC------------CceeeEEEeCCEEEEEeccCCC
Q 012701 194 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP------------RCLFGSASLGEIAILAGGSDLE 261 (458)
Q Consensus 194 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~------------r~~~~~~~~~~~lyv~GG~~~~ 261 (458)
+...++.+|.||.--. .+..|.+||..+++-.....+|.+ -...-.++..+-|+|+=.....
T Consensus 76 GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred cccEEEECceEEEEec------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 3445778888887542 346799999999876443334432 1223445556677777443322
Q ss_pred CCccCeEEEEeCCCC----cEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC-C
Q 012701 262 GNILSSAEMYNSETQ----TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP-A 336 (458)
Q Consensus 262 ~~~~~~v~~yd~~t~----~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~-~ 336 (458)
.. .-.+-..|+.+- +|.. ..+.. ....+..+-|.||++-... .....-.++||+.+++=..+ .+|- .
T Consensus 150 ~g-~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmvCGvLY~~~s~~---~~~~~I~yayDt~t~~~~~~-~i~f~n 221 (255)
T smart00284 150 AG-KIVISKLNPATLTIENTWIT--TYNKR-SASNAFMICGILYVTRSLG---SKGEKVFYAYDTNTGKEGHL-DIPFEN 221 (255)
T ss_pred CC-CEEEEeeCcccceEEEEEEc--CCCcc-cccccEEEeeEEEEEccCC---CCCcEEEEEEECCCCcccee-eeeecc
Confidence 11 123456677653 5765 22322 2234456678999995322 12234468899998763332 2222 2
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcCCCeEEEEeCC
Q 012701 337 RGGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~~~~v~~yd~~ 379 (458)
+.+. .+..-+ +.+||+. .++.+..||+.
T Consensus 222 ~y~~-------------~s~l~YNP~d~~LY~w--dng~~l~Y~v~ 252 (255)
T smart00284 222 MYEY-------------ISMLDYNPNDRKLYAW--NNGHLVHYDIA 252 (255)
T ss_pred cccc-------------ceeceeCCCCCeEEEE--eCCeEEEEEEE
Confidence 2322 022222 6788888 34567777753
No 131
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.10 E-value=13 Score=38.79 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=59.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
-.||+.| ...+||++|+..++|-. |+..--...-++.+ -+.|+.+||.+ ..|+.+|+.+..-.
T Consensus 146 cDly~~g-------sg~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 146 CDLYLVG-------SGSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED------GVVEFWDPRDKSRV 210 (703)
T ss_pred ccEEEee-------cCcceEEEEcccccccc--ccccccccceeeeecCccceEEecccC------ceEEEecchhhhhh
Confidence 3677777 55689999999999843 22222122223333 35688888865 45888888876421
Q ss_pred E-------cCCCCCCCcc--eeEE-EECCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 280 V-------LPSMKNPRKM--CSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 280 ~-------~~~~p~~r~~--~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
. +++.|..-.. .++. +-|+-|.+.-|.. ...++.||+.+.+=
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKP 262 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCc
Confidence 1 2233332221 2233 3343555543432 23589999988653
No 132
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.10 E-value=19 Score=33.44 Aligned_cols=173 Identities=13% Similarity=0.207 Sum_probs=103.6
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCC--EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE--IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
...+++||..|++=-+- +..--....++.+++ .+.+.|+.+ .++..+|-.+++.+++.-+...+..-..+
T Consensus 80 Dk~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred CceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 35789999999753221 100011123334443 566777765 56889999999999888888888888888
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 374 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~ 374 (458)
.+.+...|.|..+| .+-.||+..++-.. .-+-.|-.. ....-++...+++..++.+.
T Consensus 152 ~v~~heIvaGS~DG-------tvRtydiR~G~l~s-Dy~g~pit~---------------vs~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDG-------TVRTYDIRKGTLSS-DYFGHPITS---------------VSFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred EecccEEEeeccCC-------cEEEEEeecceeeh-hhcCCccee---------------EEecCCCCEEEEeeccceee
Confidence 88888888776553 46779887654321 112122111 12223556666666677888
Q ss_pred EEeCCCCceEEe----ccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 375 KYDKERRLWFTI----GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 375 ~yd~~~~~W~~v----~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
..|..+++-... ..+. |-.-++..+..-.||+|.... .+..|+.-.
T Consensus 209 LlDk~tGklL~sYkGhkn~e--------ykldc~l~qsdthV~sgSEDG-----~Vy~wdLvd 258 (307)
T KOG0316|consen 209 LLDKETGKLLKSYKGHKNME--------YKLDCCLNQSDTHVFSGSEDG-----KVYFWDLVD 258 (307)
T ss_pred ecccchhHHHHHhcccccce--------eeeeeeecccceeEEeccCCc-----eEEEEEecc
Confidence 888888764322 1221 223355555566777775432 456666543
No 133
>PRK04792 tolB translocation protein TolB; Provisional
Probab=88.89 E-value=31 Score=35.63 Aligned_cols=149 Identities=13% Similarity=-0.002 Sum_probs=79.7
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 244 (458)
..++.+|..+++-..+...+.... .....- |..|++..... ....+|++|..+++.+++..-...-....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~-----~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~ 312 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING-----APRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHRAIDTEPS 312 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC-----CeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCCCCccceE
Confidence 468888988877666654432110 011222 34455543221 23579999999998887754321111111
Q ss_pred EEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 245 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
-...+..|++....++ ...++.+|..+++++.+.... .........-+|+.+++.+... ....++.+|+.+
T Consensus 313 wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~----g~~~I~~~dl~~ 383 (448)
T PRK04792 313 WHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTN----GKFNIARQDLET 383 (448)
T ss_pred ECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecC----CceEEEEEECCC
Confidence 1112345555533222 257899999999988774211 1111122333555444433321 124688999999
Q ss_pred CceEEcCC
Q 012701 325 ETWTEIPN 332 (458)
Q Consensus 325 ~~W~~i~~ 332 (458)
+..+.+..
T Consensus 384 g~~~~lt~ 391 (448)
T PRK04792 384 GAMQVLTS 391 (448)
T ss_pred CCeEEccC
Confidence 88877653
No 134
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.82 E-value=29 Score=35.24 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEEecc---CCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFTIGR---LPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~v~~---lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
++.++++|. .+.+.+-....++|+.+.. .+... |. .+...+++.|+.|-
T Consensus 338 d~~~~a~G~-~G~v~~s~D~G~tW~~~~~~~~~~~~l-----y~-v~f~~~~~g~~~G~ 389 (398)
T PLN00033 338 KKEAWAAGG-SGILLRSTDGGKSWKRDKGADNIAANL-----YS-VKFFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEEEC-CCcEEEeCCCCcceeEccccCCCCcce-----eE-EEEcCCCceEEEeC
Confidence 668888874 4567777777889999752 33222 21 12234578999883
No 135
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.36 E-value=30 Score=35.81 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=74.2
Q ss_pred ccceEEEEEcCCC--ceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCccee
Q 012701 216 ISHVIYRYSILTN--SWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS 292 (458)
Q Consensus 216 ~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 292 (458)
....+.+||...+ .-+.+....... ++++. -.+.+++.|+.+ .++.++|..+++=... +........
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D------~tvriWd~~~~~~~~~--l~~hs~~is 292 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD------GTVRIWDVRTGECVRK--LKGHSDGIS 292 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC------CcEEEEeccCCeEEEe--eeccCCceE
Confidence 4557888998443 223443333333 33333 244788998876 4688899998543222 222222222
Q ss_pred EE--EECCEEEEEccccCCCCcccceEEEEECCCCceE---EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEE
Q 012701 293 GV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT---EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAA 366 (458)
Q Consensus 293 ~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~---~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~ 366 (458)
++ .-++.+++.+.++ ..+.+||+.+..-. .+.....+.... .+... +++..+.
T Consensus 293 ~~~f~~d~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--------------~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 293 GLAFSPDGNLLVSASYD-------GTIRVWDLETGSKLCLKLLSGAENSAPVT--------------SVQFSPNGKYLLS 351 (456)
T ss_pred EEEECCCCCEEEEcCCC-------ccEEEEECCCCceeeeecccCCCCCCcee--------------EEEECCCCcEEEE
Confidence 33 3477888887654 45788999888743 222211111001 22332 4455555
Q ss_pred EcCCCeEEEEeCCCCc
Q 012701 367 DYADMEVRKYDKERRL 382 (458)
Q Consensus 367 gg~~~~v~~yd~~~~~ 382 (458)
++.++.+..||+....
T Consensus 352 ~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGK 367 (456)
T ss_pred ecCCCeEEEEEccCCc
Confidence 5566688888887643
No 136
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.29 E-value=8.6 Score=32.06 Aligned_cols=82 Identities=12% Similarity=0.201 Sum_probs=53.1
Q ss_pred EEECCEEEEEEcC----CCeEEEEeCCCCceEEeccCC-CccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 357 AVVNNELYAADYA----DMEVRKYDKERRLWFTIGRLP-ERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 357 ~~~~~~lyv~gg~----~~~v~~yd~~~~~W~~v~~lp-~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
+.+||.||-+... ...|..||..+.+|+.+.. | .... ......++.++|+|-++.-..... ...+..|..
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~-P~~~~~--~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL-PEDPYS--SDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe-eeeecc--ccCccEEEEeCCeEEEEEecCCCC--cceEEEEEe
Confidence 4578988888654 4789999999999988863 3 1111 113466778899998876433221 234566665
Q ss_pred C-CCCCCceEeec
Q 012701 432 S-EGPPQWNLLAR 443 (458)
Q Consensus 432 ~-~~~~~W~~l~~ 443 (458)
+ .+..+|...-.
T Consensus 77 eD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQEWSKKHI 89 (129)
T ss_pred eccccceEEEEEE
Confidence 4 34578987633
No 137
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=88.21 E-value=9.6 Score=38.14 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=63.9
Q ss_pred CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCC-ccC-CCCcccE
Q 012701 324 TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPE-RAN-SMNGWGL 401 (458)
Q Consensus 324 ~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~-~~~-~~~~~~~ 401 (458)
.+.|+.+.. ...+.. -++.++|++|+++. .+.++.++.+- .=.+++.... ... ...+...
T Consensus 189 ~~~Wt~l~~-~~~~~~---------------DIi~~kGkfYAvD~-~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALKQ-MGYHFS---------------DIIVHKGQTYALDS-IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEccC-CCceee---------------EEEEECCEEEEEcC-CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 389999974 333333 48999999999953 47788888432 1123322110 000 0000113
Q ss_pred EEEEeCCEEEEEcCCCCC-----------CCCeeeEEEeecCCCCCCceEeeccCC
Q 012701 402 AFRACGDRLIVIGGPKAS-----------GEGFIELNSWVPSEGPPQWNLLARKQS 446 (458)
Q Consensus 402 a~~~~~~~lyv~GG~~~~-----------~~~~~~~~~~~~~~~~~~W~~l~~~p~ 446 (458)
-++...|.|+++...... ...+.++.+|..+..+.+|.++..+..
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 356677889988764211 113467888999888899999998874
No 138
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.06 E-value=34 Score=35.08 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=56.9
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
..++++|..+++-+.+...+.. .......-+|+ |++.....+ ...++.+|+.++.-+.+..-..... .
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~g~~~~lt~~~~~~~-~---- 296 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDG-----NPEIYVMDLGSRQLTRLTNHFGIDT-E---- 296 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCC-----CceEEEEECCCCCeEECccCCCCcc-c----
Confidence 5789999999988777655422 11222233554 544432221 2478999999887766543211111 1
Q ss_pred CCCCCcCCCCEEEEECCE-EEEEEcC--CCeEEEEeCCCCceEEec
Q 012701 345 EMPASAEAPPLVAVVNNE-LYAADYA--DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-lyv~gg~--~~~v~~yd~~~~~W~~v~ 387 (458)
....-+++ |+..... ...++.+|..+++.+.+.
T Consensus 297 ----------~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 297 ----------PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT 332 (433)
T ss_pred ----------eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence 12222444 4443222 246899999888887774
No 139
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.04 E-value=33 Score=34.96 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=58.0
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
..++++|+.+++-+.+...+..- ......-+|+ |++.....+ ...++++|+.++..+.+..-+.....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~----- 291 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLAFVLSKDG-----NPEIYVMDLASRQLSRVTNHPAIDTE----- 291 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEEEEEccCC-----CceEEEEECCCCCeEEcccCCCCcCC-----
Confidence 57999999999887776543211 1112223554 544322221 25789999999988877542211111
Q ss_pred CCCCCcCCCCEEEEECC-EEEEEEcC--CCeEEEEeCCCCceEEec
Q 012701 345 EMPASAEAPPLVAVVNN-ELYAADYA--DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-~lyv~gg~--~~~v~~yd~~~~~W~~v~ 387 (458)
....-++ .|++.... ...++.+|..+++++.+.
T Consensus 292 ----------~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 292 ----------PFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT 327 (430)
T ss_pred ----------eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 1122244 45554322 247999999988887774
No 140
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.92 E-value=28 Score=33.92 Aligned_cols=172 Identities=14% Similarity=0.123 Sum_probs=75.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCC-CCCC-Ccee-eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR-MNAP-RCLF-GSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~-r~~~-~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
.+.-|++|-. ..+++=+=--.+|+.... .+.+ ...+ .....++..|++|.. ..+..-.=.-.+
T Consensus 27 ~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~t 92 (302)
T PF14870_consen 27 PNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-------GLLLHTTDGGKT 92 (302)
T ss_dssp SS-EEEEETT-------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-------TEEEEESSTTSS
T ss_pred CCEEEEEecC-------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-------ceEEEecCCCCC
Confidence 4677888732 334432222357987652 2222 2333 334457788888642 122322334568
Q ss_pred EEEcC-CCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 278 WKVLP-SMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 278 W~~~~-~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
|+.++ +.+.+....... .-++.+++++... .|++=.-.-.+|+.+..-...- .. .
T Consensus 93 W~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~~~~~~~~gs-~~--------------~ 149 (302)
T PF14870_consen 93 WERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQAVVSETSGS-IN--------------D 149 (302)
T ss_dssp -EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEEEEE-S-----EE--------------E
T ss_pred cEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCeeEcccCCcce-eE--------------e
Confidence 99986 233344444443 3466677765332 3444444567899875422211 11 2
Q ss_pred EEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 356 VAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 356 ~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
+... ++++++++...+-+...|+....|+........+. ......-++.|+++.
T Consensus 150 ~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~ri-----q~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 150 ITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRI-----QSMGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-E-----EEEEE-TTS-EEEEE
T ss_pred EEECCCCcEEEEECcccEEEEecCCCccceEEccCcccee-----hhceecCCCCEEEEe
Confidence 2333 56766676544555677998889998875433332 122223456777664
No 141
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.86 E-value=9 Score=37.68 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=52.3
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEE-eCCEEEEEcCCC---CCcCccceEEEEEcCCCceeeCCCCCC-CCc
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-VGTELLVFGREL---TAHHISHVIYRYSILTNSWSSGMRMNA-PRC 241 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~ 241 (458)
.++.+|..+++-.-+-+.... .+.++. -+..+|+..-+- ..+..++.|.+||..|-+=..--.+|. +|.
T Consensus 18 rv~viD~d~~k~lGmi~~g~~------~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGFL------GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEETTTTEEEEEEEEESS------EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEECCCCcEEEEeecccC------CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 567788887764322111110 111111 155677654221 112366779999999975322112222 132
Q ss_pred -------eeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 242 -------LFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 242 -------~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
.++...-+..+||.-= .+..+|-+.|.+.++...
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~-----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNF-----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEE-----SSSEEEEEEETTTTEEEE
T ss_pred eecccccceEEccCCcEEEEEcc-----CCCCeEEEEECCCCceee
Confidence 2222223557777722 245789999999998643
No 142
>PLN00181 protein SPA1-RELATED; Provisional
Probab=87.68 E-value=52 Score=36.75 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
++.+++.|+. ...+.+||..+..-. ..+... ....++.+ ++.++++|+.+ ..+.+||..+..
T Consensus 587 ~~~~L~Sgs~------Dg~v~iWd~~~~~~~--~~~~~~-~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~ 651 (793)
T PLN00181 587 DPTLLASGSD------DGSVKLWSINQGVSI--GTIKTK-ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPK 651 (793)
T ss_pred CCCEEEEEcC------CCEEEEEECCCCcEE--EEEecC-CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCC
Confidence 4556666653 356888998765321 111111 11122222 46677777755 468889987643
Q ss_pred --EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc----eEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 278 --WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET----WTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 278 --W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
...+... ...-....+.++..++.|+.+ ..+-.||+.... |..+..+. ++ . .
T Consensus 652 ~~~~~~~~h--~~~V~~v~f~~~~~lvs~s~D-------~~ikiWd~~~~~~~~~~~~l~~~~----gh----~-----~ 709 (793)
T PLN00181 652 LPLCTMIGH--SKTVSYVRFVDSSTLVSSSTD-------NTLKLWDLSMSISGINETPLHSFM----GH----T-----N 709 (793)
T ss_pred ccceEecCC--CCCEEEEEEeCCCEEEEEECC-------CEEEEEeCCCCccccCCcceEEEc----CC----C-----C
Confidence 1111111 111122334567777777654 346778876431 22221111 11 0 0
Q ss_pred CCCEE-EEECCEEEEEEcCCCeEEEEeCCCC
Q 012701 352 APPLV-AVVNNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 352 ~~~~~-~~~~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
....+ ...++.+++.|+.++.+.+|+....
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 00012 2235677788888899999997654
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.68 E-value=24 Score=32.95 Aligned_cols=103 Identities=19% Similarity=0.358 Sum_probs=61.4
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcEEEc----------------CCCCCCCcceeEEEECCEEEEEccccCCCCccc
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVL----------------PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~----------------~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
+-++.||++.. -.++.||. ++|..- |....++...+.+..||+++|.-
T Consensus 176 krlvSgGcDn~----VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt---------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDNL----VKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT---------- 239 (299)
T ss_pred ceeeccCCccc----eeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE----------
Confidence 55788998743 34555554 366431 34456677767777788777652
Q ss_pred ceEEEEECCCCceEE--cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCC-CceEEeccC
Q 012701 315 TCGEEYDLETETWTE--IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKER-RLWFTIGRL 389 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~--i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~-~~W~~v~~l 389 (458)
-+.+...|+. +.++|.+... ..-.+.|.|+.++|.++.|..|-... ++|.+|+..
T Consensus 240 -----~~~e~e~wk~tll~~f~~~~w~---------------vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 240 -----KDEEYEPWKKTLLEEFPDVVWR---------------VSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred -----ecCccCcccccccccCCcceEE---------------EEEeccccEEEEecCCcEEEEEEeCCCCcEEEcccc
Confidence 2233455654 2334433322 23455677777777777777776554 599998743
No 144
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.23 E-value=53 Score=36.43 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=25.4
Q ss_pred eeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCC
Q 012701 243 FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMK 285 (458)
Q Consensus 243 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p 285 (458)
.+-+++++.||+... .+.++.+|..|++ |+.-+..+
T Consensus 188 ~TPlvvgg~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-------HNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred cCCEEECCEEEEECC-------CCeEEEEECCCCcEEEEEcCCCC
Confidence 344567999999833 3568889998875 88765443
No 145
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=87.16 E-value=6.6 Score=40.77 Aligned_cols=115 Identities=13% Similarity=0.032 Sum_probs=58.5
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
-.||+.|- -.+++++|++.++|-.--..-.+--++..+.--..|+.+||.+ ..|+.||+.++.-..
T Consensus 146 cDly~~gs-------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-------g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 146 CDLYLVGS-------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-------GVVEFWDPRDKSRVG 211 (703)
T ss_pred ccEEEeec-------CcceEEEEccccccccccccccccceeeeecCccceEEecccC-------ceEEEecchhhhhhe
Confidence 35777654 2679999999999843211111222222222224577888765 368899998765322
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEE-EEEEcCCCeEEEEeCCCCc
Q 012701 330 IPNMSPARGGAARGTEMPASAEAPPLVAVVNNEL-YAADYADMEVRKYDKERRL 382 (458)
Q Consensus 330 i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l-yv~gg~~~~v~~yd~~~~~ 382 (458)
.-..+.....+ +|.+..+. ..++..-|+-| ..+|-..+.+++||+.+.+
T Consensus 212 ~l~~~~~v~s~-pg~~~~~s---vTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 212 TLDAASSVNSH-PGGDAAPS---VTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eeecccccCCC-ccccccCc---ceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 11111111111 11111110 11233334344 4456677889999887644
No 146
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=86.84 E-value=16 Score=35.67 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=94.7
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-----CCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-----GEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-----~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
.++++.|.|. ...++-++|..|+. ++. --.+|+-+++ ++.+... ..+ .++.++|..
T Consensus 245 yd~rviisGS------SDsTvrvWDv~tge-----~l~-tlihHceaVLhlrf~ng~mvtc-SkD------rsiaVWdm~ 305 (499)
T KOG0281|consen 245 YDERVIVSGS------SDSTVRVWDVNTGE-----PLN-TLIHHCEAVLHLRFSNGYMVTC-SKD------RSIAVWDMA 305 (499)
T ss_pred ccceEEEecC------CCceEEEEeccCCc-----hhh-HHhhhcceeEEEEEeCCEEEEe-cCC------ceeEEEecc
Confidence 4677777773 45678888887753 111 1122332222 3433322 211 345555544
Q ss_pred CCcEEEcCCC---CCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 275 TQTWKVLPSM---KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 275 t~~W~~~~~~---p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
.-+ .+.-+ -..|...-++-+++| ||+...+ -.++-+++..+.++... +..-+.|.
T Consensus 306 sps--~it~rrVLvGHrAaVNvVdfd~k-yIVsASg------DRTikvW~~st~efvRt--l~gHkRGI----------- 363 (499)
T KOG0281|consen 306 SPT--DITLRRVLVGHRAAVNVVDFDDK-YIVSASG------DRTIKVWSTSTCEFVRT--LNGHKRGI----------- 363 (499)
T ss_pred Cch--HHHHHHHHhhhhhheeeeccccc-eEEEecC------CceEEEEeccceeeehh--hhcccccc-----------
Confidence 332 11111 112222233446788 4443221 24677888888776543 22223333
Q ss_pred CCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 352 APPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 352 ~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
+++.+++++.+-|..++.|..||++.+.=..+-.=-+.. .-+.-.+++=+|-||+++ .+.+|++
T Consensus 364 ---AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL-------vRciRFd~krIVSGaYDG------kikvWdl 427 (499)
T KOG0281|consen 364 ---ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-------VRCIRFDNKRIVSGAYDG------KIKVWDL 427 (499)
T ss_pred ---eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHh-------hhheeecCceeeeccccc------eEEEEec
Confidence 577889999999999999999999887644331111111 113345777788888753 4566665
Q ss_pred CC
Q 012701 432 SE 433 (458)
Q Consensus 432 ~~ 433 (458)
..
T Consensus 428 ~a 429 (499)
T KOG0281|consen 428 QA 429 (499)
T ss_pred cc
Confidence 43
No 147
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=86.63 E-value=35 Score=33.66 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=62.3
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc--ceeEEEECCEEEEEccccCCCCcccceEEEEECCCC-
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK--MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE- 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~- 325 (458)
+..+.+.||-+ +..++++..++.|-. .++.... .+....++|.+.+.|+..+ .+.+|...++
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc-------cEEEEEcccCc
Confidence 45667778855 457888999887532 2222222 2334467899988888763 3555655544
Q ss_pred -ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 326 -TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 326 -~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
+|.....+-. ... ..---...|+++|...+.+|+|.+.++.-.+
T Consensus 140 ~~~~~~~e~~d--ieW--------------l~WHp~a~illAG~~DGsvWmw~ip~~~~~k 184 (399)
T KOG0296|consen 140 EQWKLDQEVED--IEW--------------LKWHPRAHILLAGSTDGSVWMWQIPSQALCK 184 (399)
T ss_pred eEEEeecccCc--eEE--------------EEecccccEEEeecCCCcEEEEECCCcceee
Confidence 4654311100 000 0001145678888888999999998874333
No 148
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.96 E-value=22 Score=35.61 Aligned_cols=139 Identities=13% Similarity=0.163 Sum_probs=76.5
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC---cEEEcCCCCCCCcce
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ---TWKVLPSMKNPRKMC 291 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~p~~r~~~ 291 (458)
....+..+|..|+.-...-+-..+-...+++-+ ++.=+|.|+.+ ..+..+|...+ .|+-+.. ++-..
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~d 359 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHD 359 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEE
Confidence 344577778777654433211122222233333 66778998876 34666666544 5876644 44444
Q ss_pred eEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC
Q 012701 292 SGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD 370 (458)
Q Consensus 292 ~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~ 370 (458)
-++..||+ +++++ .+ ..+..|+.++..=..+-..-.+... ....-++++.++.-..
T Consensus 360 lait~Dgk~vl~v~-~d-------~~i~l~~~e~~~dr~lise~~~its---------------~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 360 LAITYDGKYVLLVT-VD-------KKIRLYNREARVDRGLISEEQPITS---------------FSISKDGKLALVNLQD 416 (519)
T ss_pred EEEcCCCcEEEEEe-cc-------cceeeechhhhhhhccccccCceeE---------------EEEcCCCcEEEEEccc
Confidence 45556666 44443 22 2355677665432222111111111 2344577888888788
Q ss_pred CeEEEEeCCCCceEEecc
Q 012701 371 MEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 371 ~~v~~yd~~~~~W~~v~~ 388 (458)
..+..||.+ .|..|..
T Consensus 417 qei~LWDl~--e~~lv~k 432 (519)
T KOG0293|consen 417 QEIHLWDLE--ENKLVRK 432 (519)
T ss_pred CeeEEeecc--hhhHHHH
Confidence 899999998 6666643
No 149
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.66 E-value=14 Score=36.29 Aligned_cols=71 Identities=25% Similarity=0.237 Sum_probs=42.4
Q ss_pred CCEEEEEcc--ccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC---EEEEEEcCCC
Q 012701 297 DGKFYVIGG--IGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN---ELYAADYADM 371 (458)
Q Consensus 297 ~g~lyv~GG--~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~---~lyv~gg~~~ 371 (458)
.++|||+-- ..+.....-..||+||+++++=.. .++...... ++.+..+ .||.+....+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~--Ri~l~~~~~--------------Si~Vsqd~~P~L~~~~~~~~ 312 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA--RIPLEHPID--------------SIAVSQDDKPLLYALSAGDG 312 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE--EEEEEEEES--------------EEEEESSSS-EEEEEETTTT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE--EEeCCCccc--------------eEEEccCCCcEEEEEcCCCC
Confidence 678998742 223344566789999999986332 222111111 4555533 5777776778
Q ss_pred eEEEEeCCCCce
Q 012701 372 EVRKYDKERRLW 383 (458)
Q Consensus 372 ~v~~yd~~~~~W 383 (458)
.+.+||..+++-
T Consensus 313 ~l~v~D~~tGk~ 324 (342)
T PF06433_consen 313 TLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTT--E
T ss_pred eEEEEeCcCCcE
Confidence 999999998753
No 150
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=85.24 E-value=43 Score=33.42 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=32.3
Q ss_pred CCEEEEEE-c--------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCC-EEEEEcCC
Q 012701 360 NNELYAAD-Y--------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGP 416 (458)
Q Consensus 360 ~~~lyv~g-g--------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~lyv~GG~ 416 (458)
++++|++. + ..+.|+++|..+ ++.+..++..... +++++..-+. .||+.-+.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~---~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEI---DSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCce---eeEEECCCCCeEEEEeCCC
Confidence 57899842 1 126899999654 5566655544432 4566555556 77877753
No 151
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=83.75 E-value=50 Score=32.99 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=97.2
Q ss_pred eEEEEecCCCc--EEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCC--ceeeCCCCCCCCce
Q 012701 167 EWEAFDPIRRR--WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN--SWSSGMRMNAPRCL 242 (458)
Q Consensus 167 ~~~~yDp~~~~--W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~ 242 (458)
.+.++|+.+.+ |.....- ..... ...++..+++||+-... ..+++||..++ .|+.-.... ++..
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~---~~~~~-~~~~~~~~G~i~~g~~~-------g~~y~ld~~~G~~~W~~~~~~~-~~~~ 146 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLG---AVAQL-SGPILGSDGKIYVGSWD-------GKLYALDASTGTLVWSRNVGGS-PYYA 146 (370)
T ss_pred cEEEEeCCCCcEEecccCcC---cceec-cCceEEeCCeEEEeccc-------ceEEEEECCCCcEEEEEecCCC-eEEe
Confidence 68889999986 8543321 00111 11123337777765422 27899999654 586543332 3333
Q ss_pred eeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCC-CCCCcceeEEEECCEEEEEccccCCCCcccceEEE
Q 012701 243 FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSM-KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEE 319 (458)
Q Consensus 243 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~ 319 (458)
-..+..++.+|+.- ....+..+|..+++ |+.-.+. ...+.....+..++.+|+-... ....++.
T Consensus 147 ~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~------~~~~~~a 213 (370)
T COG1520 147 SPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG------YDGILYA 213 (370)
T ss_pred cCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC------CcceEEE
Confidence 34444566666653 12568888888764 8754332 2223333333677888875321 1125888
Q ss_pred EECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC--ceEEec
Q 012701 320 YDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR--LWFTIG 387 (458)
Q Consensus 320 yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~--~W~~v~ 387 (458)
+|+.+++ |..-...+..+.... .++ ......+..++.+|... ..+.+.++|..+. .|+.-.
T Consensus 214 ~~~~~G~~~w~~~~~~~~~~~~~~---~~~---~~~~~~v~v~~~~~~~~-~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 214 LNAEDGTLKWSQKVSQTIGRTAIS---TTP---AVDGGPVYVDGGVYAGS-YGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EEccCCcEeeeeeeecccCccccc---ccc---cccCceEEECCcEEEEe-cCCeEEEEEcCCCceEEEEec
Confidence 9997654 875322222221110 000 00012344555554443 3445777777654 476544
No 152
>PTZ00420 coronin; Provisional
Probab=83.64 E-value=66 Score=34.35 Aligned_cols=154 Identities=10% Similarity=0.098 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (458)
.+++.|+. ...+.+||+.+.+=.. .+..+..-.+++. .++.+++.++.+ ..+.+||+.+++= +
T Consensus 139 ~iLaSgS~------DgtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~--i 202 (568)
T PTZ00420 139 YIMCSSGF------DSFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEI--A 202 (568)
T ss_pred eEEEEEeC------CCeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcE--E
Confidence 45555543 3568889988764211 1111111122222 256676666644 4588999987642 2
Q ss_pred CCCCCC--CcceeEEE-----ECCEEEEEccccCCCCcccceEEEEECCC-CceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 282 PSMKNP--RKMCSGVF-----MDGKFYVIGGIGGSDSKVLTCGEEYDLET-ETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 282 ~~~p~~--r~~~~~~~-----~~g~lyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
..+... ......+. -++..++.+|.+. .....+..||+.+ ..-...-.+.. ..+. -+
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~---~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~----L~------- 267 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK---NNMREMKLWDLKNTTSALVTMSIDN-ASAP----LI------- 267 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC---CCccEEEEEECCCCCCceEEEEecC-Cccc----eE-------
Confidence 111111 11111111 2455666666542 1224688899874 22111000000 0010 00
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
+....-.+.+|+.|..++.|..|+...+.-..+.
T Consensus 268 p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 268 PHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred EeeeCCCCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 0111224788999988899999998777544443
No 153
>PRK03629 tolB translocation protein TolB; Provisional
Probab=83.59 E-value=56 Score=33.47 Aligned_cols=147 Identities=5% Similarity=-0.099 Sum_probs=78.6
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..++++|..+++-+.+...+..-......-.+.+|++....++ ...++++|..++..+.+..-... .......-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~-~~~~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN-NTEPTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC-cCceEECCC
Confidence 4689999988877666554432111111112445665543322 24689999999988777543221 111122235
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE-EEEEEcC--CCeEE
Q 012701 298 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADYA--DMEVR 374 (458)
Q Consensus 298 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~gg~--~~~v~ 374 (458)
|+.+++..... ....++.+|+.+..-+.+..... .... ....-+|+ |++.... ...++
T Consensus 298 G~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~~~-~~~~--------------~~~SpDG~~Ia~~~~~~g~~~I~ 358 (429)
T PRK03629 298 SQNLAYTSDQA----GRPQVYKVNINGGAPQRITWEGS-QNQD--------------ADVSSDGKFMVMVSSNGGQQHIA 358 (429)
T ss_pred CCEEEEEeCCC----CCceEEEEECCCCCeEEeecCCC-CccC--------------EEECCCCCEEEEEEccCCCceEE
Confidence 65443332211 12468888998877666542111 1111 12223444 4444322 24689
Q ss_pred EEeCCCCceEEecc
Q 012701 375 KYDKERRLWFTIGR 388 (458)
Q Consensus 375 ~yd~~~~~W~~v~~ 388 (458)
++|+.++.++.+..
T Consensus 359 ~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 359 KQDLATGGVQVLTD 372 (429)
T ss_pred EEECCCCCeEEeCC
Confidence 99999999888763
No 154
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=83.03 E-value=33 Score=32.91 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE
Q 012701 283 SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE 362 (458)
Q Consensus 283 ~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (458)
+||..--+..+..-.|++...||.+ +..-+|++.+..=+...++.....+| .+...++-..++.
T Consensus 94 pl~s~WVMtCA~sPSg~~VAcGGLd-------N~Csiy~ls~~d~~g~~~v~r~l~gH---------tgylScC~f~dD~ 157 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSGNFVACGGLD-------NKCSIYPLSTRDAEGNVRVSRELAGH---------TGYLSCCRFLDDN 157 (343)
T ss_pred ecCceeEEEEEECCCCCeEEecCcC-------ceeEEEecccccccccceeeeeecCc---------cceeEEEEEcCCC
Confidence 3444333333444578888999987 33567888755322222222222222 1122233344555
Q ss_pred EEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCC
Q 012701 363 LYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKAS 419 (458)
Q Consensus 363 lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~ 419 (458)
-++.|..+..+..||+++.+=...- ...... -.++++...+.+.||-||.+..
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f--~GH~gD--V~slsl~p~~~ntFvSg~cD~~ 210 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVF--HGHTGD--VMSLSLSPSDGNTFVSGGCDKS 210 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEe--cCCccc--EEEEecCCCCCCeEEecccccc
Confidence 5555555678899999988754431 111000 0112232336789999998754
No 155
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=82.23 E-value=28 Score=32.80 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=92.0
Q ss_pred EEEeCCEEEEEcCC--CCCcCccceEEEEEc---CCCceee--CCCCCC-------CCceeeEEEeCCEEEEEeccCCCC
Q 012701 197 SLAVGTELLVFGRE--LTAHHISHVIYRYSI---LTNSWSS--GMRMNA-------PRCLFGSASLGEIAILAGGSDLEG 262 (458)
Q Consensus 197 ~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~---~t~~W~~--~~~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~ 262 (458)
.-+++++||.+=-. .... .....+.||- ..+.|+. ++..+. .-..|+-+.+++.-|.+|=.+++-
T Consensus 80 MGv~~NRLfa~iEtR~~a~~-km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~ 158 (367)
T PF12217_consen 80 MGVVGNRLFAVIETRTVASN-KMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDV 158 (367)
T ss_dssp EEEETTEEEEEEEEEETTT---EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eeeecceeeEEEeehhhhhh-hhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCC
Confidence 45679999977321 1111 2223344543 4677854 344443 234577778888778887766553
Q ss_pred CccCeEEEEeCCC-C-----cEEEcCC-CCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC
Q 012701 263 NILSSAEMYNSET-Q-----TWKVLPS-MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335 (458)
Q Consensus 263 ~~~~~v~~yd~~t-~-----~W~~~~~-~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~ 335 (458)
....--..|-+.. + .=+.++. .....+..+.-.++|+||+.-.... ....-..+.+-+..-..|..+.- |.
T Consensus 159 sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~-~~~~GS~L~rs~d~G~~w~slrf-p~ 236 (367)
T PF12217_consen 159 SPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTL-PTNPGSSLHRSDDNGQNWSSLRF-PN 236 (367)
T ss_dssp SS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES--TTS---EEEEESSTTSS-EEEE--TT
T ss_pred CcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcC-CCCCcceeeeecccCCchhhccc-cc
Confidence 3323333343321 1 1122332 2222233445578999999864431 12333456777777788988753 22
Q ss_pred CCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC------------------CeEE--E-----EeCCCCceEEecc-C
Q 012701 336 ARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------------------MEVR--K-----YDKERRLWFTIGR-L 389 (458)
Q Consensus 336 ~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------------------~~v~--~-----yd~~~~~W~~v~~-l 389 (458)
..... .| -.+..++.||+||... ...+ + +.++.-+|..|.+ +
T Consensus 237 nvHht----nl--------PFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqI 304 (367)
T PF12217_consen 237 NVHHT----NL--------PFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQI 304 (367)
T ss_dssp ---SS---------------EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-B
T ss_pred ccccc----CC--------CceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecce
Confidence 21111 11 3577899999998411 1111 1 3555667877742 2
Q ss_pred CCccCCCCcccEE-EEEeCCEE-EEEcCCCC
Q 012701 390 PERANSMNGWGLA-FRACGDRL-IVIGGPKA 418 (458)
Q Consensus 390 p~~~~~~~~~~~a-~~~~~~~l-yv~GG~~~ 418 (458)
-....-..+.|.+ +++-++-| |+|||.+-
T Consensus 305 YqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 305 YQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp B--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred eccccccccccceeEEEECCEEEEEecCccc
Confidence 1111111223443 44557776 58898753
No 156
>PTZ00421 coronin; Provisional
Probab=82.20 E-value=70 Score=33.56 Aligned_cols=152 Identities=6% Similarity=0.044 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC-CCceeeEE-EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA-PRCLFGSA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
+.+++.|+ ....+.+||..+++-.. .+.. ...-.+++ ..++.+++.|+.+ ..+.+||+.+++-.
T Consensus 138 ~~iLaSgs------~DgtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~v 203 (493)
T PTZ00421 138 MNVLASAG------ADMVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTIV 203 (493)
T ss_pred CCEEEEEe------CCCEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCC------CEEEEEECCCCcEE
Confidence 34666664 34568899998764321 1111 11111222 2256777777755 45888999877521
Q ss_pred -EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 280 -VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 280 -~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
.+......+........++..++..|... ..-..+..||+.+.. ..... ... .... .+
T Consensus 204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~---s~Dr~VklWDlr~~~~p~~~~~-~d~-~~~~--------------~~ 264 (493)
T PTZ00421 204 SSVEAHASAKSQRCLWAKRKDLIITLGCSK---SQQRQIMLWDTRKMASPYSTVD-LDQ-SSAL--------------FI 264 (493)
T ss_pred EEEecCCCCcceEEEEcCCCCeEEEEecCC---CCCCeEEEEeCCCCCCceeEec-cCC-CCce--------------EE
Confidence 11111111111111122333444444321 122467889986532 11110 000 0001 12
Q ss_pred EEE--CCEEEEEEc-CCCeEEEEeCCCCceEEe
Q 012701 357 AVV--NNELYAADY-ADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 357 ~~~--~~~lyv~gg-~~~~v~~yd~~~~~W~~v 386 (458)
..+ ++.+++++| .++.|..||..++.....
T Consensus 265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred EEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 222 455555555 478899999988876544
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=82.01 E-value=20 Score=36.74 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=40.5
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEV 373 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v 373 (458)
-.+.+|+|.-|++ ..+..||..+.+-+..-....|.+ +++.. +|.+.++|...+++
T Consensus 218 psne~l~vsVG~D-------kki~~yD~~s~~s~~~l~y~~Pls----------------tvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 218 PSNEALLVSVGYD-------KKINIYDIRSQASTDRLTYSHPLS----------------TVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred CCccceEEEeccc-------ceEEEeecccccccceeeecCCcc----------------eeeecCCceEEEeecCCceE
Confidence 3578888887776 468899998655332211111111 23333 66777788888999
Q ss_pred EEEeCCCC
Q 012701 374 RKYDKERR 381 (458)
Q Consensus 374 ~~yd~~~~ 381 (458)
+.||+...
T Consensus 275 i~YD~R~~ 282 (673)
T KOG4378|consen 275 IAYDMRST 282 (673)
T ss_pred EEEecccC
Confidence 99998653
No 158
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.01 E-value=57 Score=31.74 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=115.2
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCC-EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-Cceee
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-RCLFG 244 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~ 244 (458)
-...||+.+.+=...-..+..|+|. +|.++.-++ .||..=.. .......|-+||.. +..+++...+.. ..-|-
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFy--GHg~fs~dG~~LytTEnd--~~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHe 103 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFY--GHGVFSPDGRLLYTTEND--YETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHE 103 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEe--cCEEEcCCCCEEEEeccc--cCCCcEEEEEEECc-CCcEEEeEecCCCcChhh
Confidence 4567899988755444446667665 466666655 45554222 22245678899998 677777766542 33355
Q ss_pred EEEe-CC-EEEEE-eccCCC---CC-------ccCeEEEEeCCCCc----EEEcCCCCCCCcceeEEEECCEEEEEcccc
Q 012701 245 SASL-GE-IAILA-GGSDLE---GN-------ILSSAEMYNSETQT----WKVLPSMKNPRKMCSGVFMDGKFYVIGGIG 307 (458)
Q Consensus 245 ~~~~-~~-~lyv~-GG~~~~---~~-------~~~~v~~yd~~t~~----W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~ 307 (458)
+..+ ++ .|.|. ||.... ++ .-.++...|..+++ |+.-+++..--..|-++.-+|.+.+-.=+.
T Consensus 104 l~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~q 183 (305)
T PF07433_consen 104 LLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQ 183 (305)
T ss_pred EEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecC
Confidence 5554 33 56555 665322 11 12355667788876 332222222223344444556555443333
Q ss_pred CCCCcccceEEEEECCCCceEEcCCCCCCC-CCCCCCCCCCCCcCCCCEEEEE-CCEEEEEE-cCCCeEEEEeCCCCceE
Q 012701 308 GSDSKVLTCGEEYDLETETWTEIPNMSPAR-GGAARGTEMPASAEAPPLVAVV-NNELYAAD-YADMEVRKYDKERRLWF 384 (458)
Q Consensus 308 ~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~g-g~~~~v~~yd~~~~~W~ 384 (458)
+......--+..++.... -+.+. +|... ... .....++++. ++.++++. -..+.+.+||..++.|.
T Consensus 184 g~~~~~~PLva~~~~g~~-~~~~~-~p~~~~~~l---------~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 184 GDPGDAPPLVALHRRGGA-LRLLP-APEEQWRRL---------NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CCCCccCCeEEEEcCCCc-ceecc-CChHHHHhh---------CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 332222222333333321 11111 11110 000 0111145554 33444443 35578999999999999
Q ss_pred EeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 385 TIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 385 ~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
....++.. ++++..++..++..|
T Consensus 253 ~~~~l~D~--------cGva~~~~~f~~ssG 275 (305)
T PF07433_consen 253 GSVPLPDA--------CGVAPTDDGFLVSSG 275 (305)
T ss_pred eccccCce--------eeeeecCCceEEeCC
Confidence 98888763 334455555444444
No 159
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.72 E-value=41 Score=34.04 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=81.4
Q ss_pred cceEEEEEcCCC-----ceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc---EE-EcCCCCCC
Q 012701 217 SHVIYRYSILTN-----SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT---WK-VLPSMKNP 287 (458)
Q Consensus 217 ~~~v~~yd~~t~-----~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~-~~~~~p~~ 287 (458)
.+.+|..|..+. .|+.+.+ +..-..+.+...++.+|+.-..+. ....+..+++.+.. |. .+.+-...
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCCc
Confidence 378999999875 7777643 122222334445889998866332 24678888888765 66 44432222
Q ss_pred CcceeEEEECCEEEEEccccCCCCcccceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-----CC
Q 012701 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-----NN 361 (458)
Q Consensus 288 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-----~~ 361 (458)
..-..+...++.|++.--.+ ....+.+||+. +..-..++ +|.. + ++... .+
T Consensus 327 ~~l~~~~~~~~~Lvl~~~~~-----~~~~l~v~~~~~~~~~~~~~-~p~~--g---------------~v~~~~~~~~~~ 383 (414)
T PF02897_consen 327 VSLEDVSLFKDYLVLSYREN-----GSSRLRVYDLDDGKESREIP-LPEA--G---------------SVSGVSGDFDSD 383 (414)
T ss_dssp EEEEEEEEETTEEEEEEEET-----TEEEEEEEETT-TEEEEEEE-SSSS--S---------------EEEEEES-TT-S
T ss_pred eeEEEEEEECCEEEEEEEEC-----CccEEEEEECCCCcEEeeec-CCcc--e---------------EEeccCCCCCCC
Confidence 23344456788888764332 35678999998 33333333 2221 1 11111 33
Q ss_pred EEEEE-EcCC--CeEEEEeCCCCceEEec
Q 012701 362 ELYAA-DYAD--MEVRKYDKERRLWFTIG 387 (458)
Q Consensus 362 ~lyv~-gg~~--~~v~~yd~~~~~W~~v~ 387 (458)
.+++. .+.. ..++.||+.+++.+.+.
T Consensus 384 ~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 384 ELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 44443 3333 68999999999877653
No 160
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=78.88 E-value=61 Score=34.19 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=67.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-EECC--EEEEEccccCCCCcccceEEEEECCCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDG--KFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
|++|-++-+..+ ...+.++.+....=+ .++...+.....+ ++.- .|+|. ....|-+||+...
T Consensus 533 GDYlatV~~~~~----~~~VliHQLSK~~sQ--~PF~kskG~vq~v~FHPs~p~lfVa---------Tq~~vRiYdL~kq 597 (733)
T KOG0650|consen 533 GDYLATVMPDSG----NKSVLIHQLSKRKSQ--SPFRKSKGLVQRVKFHPSKPYLFVA---------TQRSVRIYDLSKQ 597 (733)
T ss_pred CceEEEeccCCC----cceEEEEeccccccc--CchhhcCCceeEEEecCCCceEEEE---------eccceEEEehhHH
Confidence 455655544332 367888888776532 1221122222223 3332 34443 2356888999764
Q ss_pred ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCC--ceEEeccCCCccCC---CCcc
Q 012701 326 TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERR--LWFTIGRLPERANS---MNGW 399 (458)
Q Consensus 326 ~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~---~~~~ 399 (458)
.-.+- -++..+--. ++++. +|.=.++|+..+.+..||.+-. -|+.+---+..... +..+
T Consensus 598 elvKk-L~tg~kwiS--------------~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry 662 (733)
T KOG0650|consen 598 ELVKK-LLTGSKWIS--------------SMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY 662 (733)
T ss_pred HHHHH-HhcCCeeee--------------eeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc
Confidence 32110 122222111 33333 4455666778888888887654 67765311111111 1111
Q ss_pred c-EEEEEeCCEEEEEcCC
Q 012701 400 G-LAFRACGDRLIVIGGP 416 (458)
Q Consensus 400 ~-~a~~~~~~~lyv~GG~ 416 (458)
. ++.+.-++.++||=|.
T Consensus 663 PLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 663 PLFASGSDDGTVIVFHGM 680 (733)
T ss_pred ceeeeecCCCcEEEEeee
Confidence 2 3444456788888774
No 161
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=78.42 E-value=66 Score=31.02 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=51.7
Q ss_pred ccceEEEEEcCCCceeeCCCCCCC-CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
..+.|-+||..|..=..+..-..+ |+-+.+ .....+|.||++ ..+..+|+.... .+.....+..-+++
T Consensus 73 ~dg~vr~~Dln~~~~~~igth~~~i~ci~~~--~~~~~vIsgsWD------~~ik~wD~R~~~--~~~~~d~~kkVy~~- 141 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS--YEVGCVISGSWD------KTIKFWDPRNKV--VVGTFDQGKKVYCM- 141 (323)
T ss_pred cCceEEEEEecCCcceeeccCCCceEEEEee--ccCCeEEEcccC------ccEEEEeccccc--cccccccCceEEEE-
Confidence 456789999998776555433222 221111 234567889987 457788887621 11112222233333
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
.+.|...|+|+.+ ..+..||+.+..
T Consensus 142 ~v~g~~LvVg~~~-------r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 142 DVSGNRLVVGTSD-------RKVLIYDLRNLD 166 (323)
T ss_pred eccCCEEEEeecC-------ceEEEEEccccc
Confidence 3345555666544 468899998754
No 162
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=77.00 E-value=66 Score=30.25 Aligned_cols=190 Identities=10% Similarity=0.072 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
+++.++.+|. ..|-.||..++.=..+......+....++-+ +++--..||-++ .+-++|+..-.-
T Consensus 51 dk~~LAaa~~-------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~ 117 (311)
T KOG0315|consen 51 DKKDLAAAGN-------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSC 117 (311)
T ss_pred CcchhhhccC-------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCccc
Confidence 4555556654 3577899987753333333333344444433 666666677553 456667665322
Q ss_pred EEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 279 KVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
++.-..+.+. -..+..-++--+|-|.. ...|.++|+.++...... +|...... .++++
T Consensus 118 qR~~~~~spV--n~vvlhpnQteLis~dq------sg~irvWDl~~~~c~~~l-iPe~~~~i-------------~sl~v 175 (311)
T KOG0315|consen 118 QRNYQHNSPV--NTVVLHPNQTELISGDQ------SGNIRVWDLGENSCTHEL-IPEDDTSI-------------QSLTV 175 (311)
T ss_pred chhccCCCCc--ceEEecCCcceEEeecC------CCcEEEEEccCCcccccc-CCCCCcce-------------eeEEE
Confidence 2221222111 12333333322332322 235899999998765432 33332221 13333
Q ss_pred E-CCEEEEEEcCCCeEEEEeCCCCce-EEeccCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 359 V-NNELYAADYADMEVRKYDKERRLW-FTIGRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 359 ~-~~~lyv~gg~~~~v~~yd~~~~~W-~~v~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
. +|...+.....+.+++++.-+.+- +.+.++.. ...+++++..+... +++.+...+.+ .++.+|..+
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k-~~ah~~~il~C~lSPd~k~lat~ssd------ktv~iwn~~ 245 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK-FQAHNGHILRCLLSPDVKYLATCSSD------KTVKIWNTD 245 (311)
T ss_pred cCCCcEEEEecCCccEEEEEccCCCccccceEhhh-eecccceEEEEEECCCCcEEEeecCC------ceEEEEecC
Confidence 3 667666666668889988876443 12222211 11234455554433 44555555432 245555543
No 163
>PRK03629 tolB translocation protein TolB; Provisional
Probab=75.94 E-value=98 Score=31.68 Aligned_cols=101 Identities=11% Similarity=-0.019 Sum_probs=55.6
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
..++++|+.+++-+.+...+..-. .....-||+ |++.....+ ...++.+|+.+++.+.+..-......
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g-----~~~I~~~d~~tg~~~~lt~~~~~~~~----- 291 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTG-----SLNLYVMDLASGQIRQVTDGRSNNTE----- 291 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCC-----CcEEEEEECCCCCEEEccCCCCCcCc-----
Confidence 578899999887777665443211 112233554 554432221 23589999999888776543211111
Q ss_pred CCCCCcCCCCEEEEECCE-EEEEEcC--CCeEEEEeCCCCceEEec
Q 012701 345 EMPASAEAPPLVAVVNNE-LYAADYA--DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~-lyv~gg~--~~~v~~yd~~~~~W~~v~ 387 (458)
....-+++ |+..... ...++.+|..++.-+.+.
T Consensus 292 ----------~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 292 ----------PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred ----------eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence 11222444 4333211 247888899887766664
No 164
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=75.68 E-value=78 Score=30.43 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=103.0
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCcee---eCC-CCCCCCce
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWS---SGM-RMNAPRCL 242 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~-~~p~~r~~ 242 (458)
.+..+|..+..=...-|||...--.| +.+-.+.....||. .+.+-+|+..+..=. ++. .++.-..+
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtC----A~sPSg~~VAcGGL------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgy 147 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTC----AYSPSGNFVACGGL------DNKCSIYPLSTRDAEGNVRVSRELAGHTGY 147 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEE----EECCCCCeEEecCc------CceeEEEecccccccccceeeeeecCccce
Confidence 45555655443333334554432222 13335666777875 456778888755222 111 22322333
Q ss_pred eeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE-----E--EECCEEEEEccccCCCCccc
Q 012701 243 FGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG-----V--FMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 243 ~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-----~--~~~g~lyv~GG~~~~~~~~~ 314 (458)
.+++. +++.-++.|.-+ .+.-.+|.++++=...-. +|.+ . -.+++.||.||.+.
T Consensus 148 lScC~f~dD~~ilT~SGD------~TCalWDie~g~~~~~f~------GH~gDV~slsl~p~~~ntFvSg~cD~------ 209 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGD------MTCALWDIETGQQTQVFH------GHTGDVMSLSLSPSDGNTFVSGGCDK------ 209 (343)
T ss_pred eEEEEEcCCCceEecCCC------ceEEEEEcccceEEEEec------CCcccEEEEecCCCCCCeEEeccccc------
Confidence 33333 344434443322 345667888875433211 2211 1 12788999999762
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCcc
Q 012701 315 TCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERA 393 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 393 (458)
....+|.....-.. .++ |+++.- .++..+ +|.-++.|..+.....||+..++=..+-.-+...
T Consensus 210 -~aklWD~R~~~c~q--tF~--------ghesDI-----Nsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 210 -SAKLWDVRSGQCVQ--TFE--------GHESDI-----NSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred -ceeeeeccCcceeE--eec--------cccccc-----ceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 23456665442111 111 111110 022222 6667777777788999999887644432211111
Q ss_pred CCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 394 NSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 394 ~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
. +........-|+|++.|.. .. ..++|+-
T Consensus 274 ~---gitSv~FS~SGRlLfagy~-d~-----~c~vWDt 302 (343)
T KOG0286|consen 274 C---GITSVAFSKSGRLLFAGYD-DF-----TCNVWDT 302 (343)
T ss_pred C---CceeEEEcccccEEEeeec-CC-----ceeEeec
Confidence 1 1112233456888888843 22 4566664
No 165
>PRK01742 tolB translocation protein TolB; Provisional
Probab=75.48 E-value=1e+02 Score=31.57 Aligned_cols=139 Identities=9% Similarity=-0.088 Sum_probs=69.7
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
..++++|..++.-+.+...+.... .....-++ +|++....++. ..++.+|..++..+.+..-... .......-
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSp 301 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSGAGN-NTEPSWSP 301 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccCCCC-cCCEEECC
Confidence 468999998887666554432111 11122244 45544333322 3588899988877766432211 11122234
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCCCeEE
Q 012701 297 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN-ELYAADYADMEVR 374 (458)
Q Consensus 297 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~~~v~ 374 (458)
||+ |++.....+ ...++.+|.....-+.+.. ... . ....-++ .|++.+. ..++
T Consensus 302 DG~~i~f~s~~~g-----~~~I~~~~~~~~~~~~l~~---~~~-~--------------~~~SpDG~~ia~~~~--~~i~ 356 (429)
T PRK01742 302 DGQSILFTSDRSG-----SPQVYRMSASGGGASLVGG---RGY-S--------------AQISADGKTLVMING--DNVV 356 (429)
T ss_pred CCCEEEEEECCCC-----CceEEEEECCCCCeEEecC---CCC-C--------------ccCCCCCCEEEEEcC--CCEE
Confidence 665 444432221 1356777766553333211 001 1 1112244 3444433 5688
Q ss_pred EEeCCCCceEEec
Q 012701 375 KYDKERRLWFTIG 387 (458)
Q Consensus 375 ~yd~~~~~W~~v~ 387 (458)
++|..++.++.+.
T Consensus 357 ~~Dl~~g~~~~lt 369 (429)
T PRK01742 357 KQDLTSGSTEVLS 369 (429)
T ss_pred EEECCCCCeEEec
Confidence 8999999887664
No 166
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=75.23 E-value=32 Score=35.10 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--E-CCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--M-DGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
.+.-|+.+|++ ..+-.+|.+|++-..--.. .. ....+- - +.++|++||.++ .|..||..++
T Consensus 269 ~g~~fLS~sfD------~~lKlwDtETG~~~~~f~~--~~-~~~cvkf~pd~~n~fl~G~sd~-------ki~~wDiRs~ 332 (503)
T KOG0282|consen 269 CGTSFLSASFD------RFLKLWDTETGQVLSRFHL--DK-VPTCVKFHPDNQNIFLVGGSDK-------KIRQWDIRSG 332 (503)
T ss_pred cCCeeeeeecc------eeeeeeccccceEEEEEec--CC-CceeeecCCCCCcEEEEecCCC-------cEEEEeccch
Confidence 34556777766 3466789998864332111 11 111111 1 348999999762 3555666554
Q ss_pred c
Q 012701 326 T 326 (458)
Q Consensus 326 ~ 326 (458)
+
T Consensus 333 k 333 (503)
T KOG0282|consen 333 K 333 (503)
T ss_pred H
Confidence 3
No 167
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=75.15 E-value=55 Score=28.43 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=49.0
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCC-CCCCCCCCCCCcCCCCEE-EEECCEEEEEEc-
Q 012701 293 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARG-GAARGTEMPASAEAPPLV-AVVNNELYAADY- 368 (458)
Q Consensus 293 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~-~~~~~~~~~~~~~~~~~~-~~~~~~lyv~gg- 368 (458)
++.++|.+|.++....... ...|..||+.+.++ ..++ +|.... .. .. ..+ ++.+++|.++-.
T Consensus 1 gV~vnG~~hW~~~~~~~~~--~~~IlsFDl~~E~F~~~~~-lP~~~~~~~----------~~-~~L~~v~~~~L~~~~~~ 66 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDE--KDFILSFDLSTEKFGRSLP-LPFCNDDDD----------DS-VSLSVVRGDCLCVLYQC 66 (164)
T ss_pred CEEECCEEEeeEEecCCCC--ceEEEEEeccccccCCEEC-CCCccCccC----------CE-EEEEEecCCEEEEEEec
Confidence 3678999999987652211 11689999999999 5544 343322 11 00 023 333778887742
Q ss_pred -C--CCeEEEEeC---CCCceEEec
Q 012701 369 -A--DMEVRKYDK---ERRLWFTIG 387 (458)
Q Consensus 369 -~--~~~v~~yd~---~~~~W~~v~ 387 (458)
. .-+||+.+. ...+|+++-
T Consensus 67 ~~~~~~~IWvm~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 67 DETSKIEIWVMKKYGYGKESWTKLF 91 (164)
T ss_pred cCCccEEEEEEeeeccCcceEEEEE
Confidence 1 247777763 367899874
No 168
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.97 E-value=1.1e+02 Score=31.60 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=54.1
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTE 345 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~ 345 (458)
..+|+=.-...+++++-+|+...+. -+.+++++|.+.-..| ...++.-|+.-+--++-.+...--.
T Consensus 206 GklWis~d~g~tFeK~vdl~~~vS~--PmIV~~RvYFlsD~eG-----~GnlYSvdldGkDlrrHTnFtdYY~------- 271 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNVSS--PMIVGERVYFLSDHEG-----VGNLYSVDLDGKDLRRHTNFTDYYP------- 271 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCcCC--ceEEcceEEEEecccC-----ccceEEeccCCchhhhcCCchhccc-------
Confidence 4455444444467777777655443 4678999999965543 2345666666554333332211110
Q ss_pred CCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 346 MPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 346 ~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
--+..+|+-.++- ..++|+.|||++..-+++.
T Consensus 272 ---------R~~nsDGkrIvFq-~~GdIylydP~td~lekld 303 (668)
T COG4946 272 ---------RNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred ---------cccCCCCcEEEEe-cCCcEEEeCCCcCcceeee
Confidence 1233455544442 2357888888887776663
No 169
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.78 E-value=1e+02 Score=31.34 Aligned_cols=197 Identities=12% Similarity=0.090 Sum_probs=92.8
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
...++.+|++|-. ..++.=.-.-.+|++++..+ .+-.......+ ++.++++|.. ..+++=+-.-
T Consensus 143 ~f~~~~g~~vG~~-------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G 208 (398)
T PLN00033 143 SFKGKEGWIIGKP-------AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAG 208 (398)
T ss_pred EEECCEEEEEcCc-------eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCC
Confidence 3457788888732 23333333347899875421 11112222333 4457777632 2244334344
Q ss_pred CcEEEcCCCC----CCC--------------cceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC
Q 012701 276 QTWKVLPSMK----NPR--------------KMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA 336 (458)
Q Consensus 276 ~~W~~~~~~p----~~r--------------~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~ 336 (458)
.+|+.+...+ ..+ ....+. .-+++++++|-.. +-+...|.....|+.+......
T Consensus 209 ~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~~~~~ 281 (398)
T PLN00033 209 RNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNRASAR 281 (398)
T ss_pred CCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecCCCcc
Confidence 5899862211 111 011111 2244555554322 1122344445558887643332
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceE--EeccCCCccCCCCccc-EEE-EEeCCEEEE
Q 012701 337 RGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF--TIGRLPERANSMNGWG-LAF-RACGDRLIV 412 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~--~v~~lp~~~~~~~~~~-~a~-~~~~~~lyv 412 (458)
+... .....++.+++++. .+.+..-+.....|+ ....++..... .+ .++ ..-++.+++
T Consensus 282 ~l~~--------------v~~~~dg~l~l~g~-~G~l~~S~d~G~~~~~~~f~~~~~~~~~---~~l~~v~~~~d~~~~a 343 (398)
T PLN00033 282 RIQN--------------MGWRADGGLWLLTR-GGGLYVSKGTGLTEEDFDFEEADIKSRG---FGILDVGYRSKKEAWA 343 (398)
T ss_pred ceee--------------eeEcCCCCEEEEeC-CceEEEecCCCCcccccceeecccCCCC---cceEEEEEcCCCcEEE
Confidence 2221 22345788888873 455666555555553 22222221110 11 222 234668888
Q ss_pred EcCCCCCCCCeeeEEEeecCCCCCCceEee
Q 012701 413 IGGPKASGEGFIELNSWVPSEGPPQWNLLA 442 (458)
Q Consensus 413 ~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~ 442 (458)
.|... .++....+..+|+.+.
T Consensus 344 ~G~~G---------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 344 AGGSG---------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred EECCC---------cEEEeCCCCcceeEcc
Confidence 88531 1344445567888865
No 170
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=74.65 E-value=82 Score=30.18 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=78.9
Q ss_pred eEEEEEcCCCceeeCCC-CCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-
Q 012701 219 VIYRYSILTNSWSSGMR-MNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV- 294 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~- 294 (458)
.|-++|++|..-++.+- +..+-...-.+++ .+.|+..|-....+ ++||.++.-+..+. |....-+..|
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfpa-PqG~gpyGi~a 196 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFPA-PQGGGPYGICA 196 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce-------ecCcccCceeeecc-CCCCCCcceEE
Confidence 68889998876665431 1222233333444 34677775432222 46777776554433 2332223333
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEV 373 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v 373 (458)
.-+|.+|+.-=. -+-+-..|+.+..=++++. |.. ..+. + -...---+++++.......+
T Consensus 197 tpdGsvwyasla-------gnaiaridp~~~~aev~p~-P~~~~~gs-R-----------riwsdpig~~wittwg~g~l 256 (353)
T COG4257 197 TPDGSVWYASLA-------GNAIARIDPFAGHAEVVPQ-PNALKAGS-R-----------RIWSDPIGRAWITTWGTGSL 256 (353)
T ss_pred CCCCcEEEEecc-------ccceEEcccccCCcceecC-CCcccccc-c-----------ccccCccCcEEEeccCCcee
Confidence 458888876221 2345667777765444442 222 1111 0 01233457888887777899
Q ss_pred EEEeCCCCceEEec
Q 012701 374 RKYDKERRLWFTIG 387 (458)
Q Consensus 374 ~~yd~~~~~W~~v~ 387 (458)
.+||+.+.+|.+-+
T Consensus 257 ~rfdPs~~sW~eyp 270 (353)
T COG4257 257 HRFDPSVTSWIEYP 270 (353)
T ss_pred eEeCcccccceeee
Confidence 99999999998864
No 171
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=74.35 E-value=78 Score=29.77 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=91.2
Q ss_pred CCEEEEEe--ccCCCCCccCeE-EEEeCC-CCcEEEcCCCCCC------Cccee--EEEECCEEEEEccccCCCCcccce
Q 012701 249 GEIAILAG--GSDLEGNILSSA-EMYNSE-TQTWKVLPSMKNP------RKMCS--GVFMDGKFYVIGGIGGSDSKVLTC 316 (458)
Q Consensus 249 ~~~lyv~G--G~~~~~~~~~~v-~~yd~~-t~~W~~~~~~p~~------r~~~~--~~~~~g~lyv~GG~~~~~~~~~~~ 316 (458)
+++|+++. +..........+ +.+... -.+|+....++.. ..... ...-+|++++. .+.. .......
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~-~~~~-~~~~~~~ 135 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAP-YYHE-SGGSFSA 135 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEE-EEEE-SSCEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEE-Eeec-cccCcce
Confidence 78888885 222111111121 244444 3479876543211 11122 33458888887 2221 1112333
Q ss_pred EEEEECC-CCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcC---CCeEEEEeCC-CCceEEec--
Q 012701 317 GEEYDLE-TETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVV-NNELYAADYA---DMEVRKYDKE-RRLWFTIG-- 387 (458)
Q Consensus 317 v~~yd~~-~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~---~~~v~~yd~~-~~~W~~v~-- 387 (458)
...|... -.+|+.....+.. .... +.++.. +|+|+++--. ......+..+ ..+|+...
T Consensus 136 ~~~~S~D~G~tW~~~~~~~~~~~~~e-------------~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~ 202 (275)
T PF13088_consen 136 FVYYSDDGGKTWSSGSPIPDGQGECE-------------PSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPT 202 (275)
T ss_dssp EEEEESSTTSSEEEEEECECSEEEEE-------------EEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEE
T ss_pred EEEEeCCCCceeeccccccccCCcce-------------eEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceec
Confidence 4445444 5569887655321 1111 133333 6788887532 2233334444 45799865
Q ss_pred cCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCC---CceeeeEEEe
Q 012701 388 RLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQS---ANFVYNCAVM 456 (458)
Q Consensus 388 ~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~---~~~~~~~~v~ 456 (458)
.+|.... +..+.. -+++++++.... .....+.++.-..+..+|..+..+.. +.+.|++.+.
T Consensus 203 ~~~~~~~-----~~~~~~~~~g~~~~~~~~~---~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~ 267 (275)
T PF13088_consen 203 NLPNPNS-----SISLVRLSDGRLLLVYNNP---DGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQ 267 (275)
T ss_dssp ECSSCCE-----EEEEEECTTSEEEEEEECS---STSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEE
T ss_pred ccCcccC-----CceEEEcCCCCEEEEEECC---CCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEE
Confidence 4444332 233333 366888877621 12344555554445789987766554 4588888764
No 172
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=73.92 E-value=79 Score=29.65 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=111.0
Q ss_pred EEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcC----CCceeeCCCCCCCCceee
Q 012701 169 EAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSIL----TNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 169 ~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~----t~~W~~~~~~p~~r~~~~ 244 (458)
....+..+.|++=|... ++++|++... ....++.|... .+.|...-.+|.+..+.+
T Consensus 13 ~~~~~~~GsWmrDpl~~---------------~~r~~~~~~~-----~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg 72 (249)
T KOG3545|consen 13 KTAGPRFGAWMRDPLPA---------------DDRIYVMNYF-----DGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTG 72 (249)
T ss_pred EeeccccceeecCCCcc---------------cCceEEeccc-----cCceEEEeccHHHhhccCcceEEeCCCCccccc
Confidence 34555667887643111 5678888443 44556666653 356777777888888889
Q ss_pred EEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc---EEEcCCCCCC---------CcceeEEEECCEEEEEccccCCCCc
Q 012701 245 SASLGEIAILAGGSDLEGNILSSAEMYNSETQT---WKVLPSMKNP---------RKMCSGVFMDGKFYVIGGIGGSDSK 312 (458)
Q Consensus 245 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~---------r~~~~~~~~~g~lyv~GG~~~~~~~ 312 (458)
-+++++.+|.-.+ ....+..||+.+.. |..+|.+... ....-.++...-|+++=-.. +..
T Consensus 73 ~VVynGs~yynk~------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~--~~~ 144 (249)
T KOG3545|consen 73 HVVYNGSLYYNKA------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP--ENA 144 (249)
T ss_pred eEEEcceEEeecc------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc--ccC
Confidence 9999999888753 24678899999853 6666643211 11122334444455553222 111
Q ss_pred ccceEEEEECCC----CceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---CeE-EEEeCCCCceE
Q 012701 313 VLTCGEEYDLET----ETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD---MEV-RKYDKERRLWF 384 (458)
Q Consensus 313 ~~~~v~~yd~~~----~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~---~~v-~~yd~~~~~W~ 384 (458)
....+-..|+.+ .+|.. ..+....+ ...++-|.||++.... ..| +.||..+++-.
T Consensus 145 g~iv~skLdp~tl~~e~tW~T--~~~k~~~~---------------~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~ 207 (249)
T KOG3545|consen 145 GTIVLSKLDPETLEVERTWNT--TLPKRSAG---------------NAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQE 207 (249)
T ss_pred CcEEeeccCHHHhheeeeecc--ccCCCCcC---------------ceEEEeeeeEEEeccccCCceEEEEEEcCCCcee
Confidence 122245666643 34632 22333332 3677789999996533 233 68999988774
Q ss_pred EeccCCCccCCCCcccEEEE---EeCCEEEEEc
Q 012701 385 TIGRLPERANSMNGWGLAFR---ACGDRLIVIG 414 (458)
Q Consensus 385 ~v~~lp~~~~~~~~~~~a~~---~~~~~lyv~G 414 (458)
.+ .+|.....- +++.. ..+.+||++-
T Consensus 208 ~~-~ipf~N~y~---~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 208 RI-DLPFPNPYS---YATMIDYNPRDRRLYAWD 236 (249)
T ss_pred cc-cccccchhh---hhhccCCCcccceeeEec
Confidence 44 445443310 12222 2356788875
No 173
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=73.86 E-value=97 Score=30.66 Aligned_cols=142 Identities=12% Similarity=0.186 Sum_probs=74.9
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee--eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC--c
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF--GSASLGEIAILAGGSDLEGNILSSAEMYNSETQ--T 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~ 277 (458)
+.+.+.||.. +.-++++..++.|-- .++.-.-.. .....++.+.+.|+..+ .+.++...++ +
T Consensus 76 ~~l~aTGGgD------D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG------~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 76 NNLVATGGGD------DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSG------KVLVFKVSTGGEQ 141 (399)
T ss_pred CceEEecCCC------ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCc------cEEEEEcccCceE
Confidence 3455667653 345788888887532 111111112 22234677777777653 4666666655 4
Q ss_pred EEEcCCCCCC--CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 278 WKVLPSMKNP--RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 278 W~~~~~~p~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
|....++..- ...|. .+.|+.+|-.+ .++|+|.+.+..-.++ |+.. ..+..+ .
T Consensus 142 ~~~~~e~~dieWl~WHp----~a~illAG~~D-------GsvWmw~ip~~~~~kv--~~Gh--------~~~ct~----G 196 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHP----RAHILLAGSTD-------GSVWMWQIPSQALCKV--MSGH--------NSPCTC----G 196 (399)
T ss_pred EEeecccCceEEEEecc----cccEEEeecCC-------CcEEEEECCCcceeeE--ecCC--------CCCccc----c
Confidence 7654322110 11111 23455554433 3578888877532222 2211 111111 1
Q ss_pred EEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 356 VAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 356 ~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
-..-+|+..+.|+.++.|.+||+.+.+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCc
Confidence 223368888888889999999999975
No 174
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=73.34 E-value=98 Score=30.48 Aligned_cols=157 Identities=16% Similarity=0.218 Sum_probs=82.6
Q ss_pred cCeEEEEeCCCCcEEEcCCCC-CCCcce-eEEEE-CCE-EEEEccccCCCCcccceEEEEECCCCceEEcC---CCCCCC
Q 012701 265 LSSAEMYNSETQTWKVLPSMK-NPRKMC-SGVFM-DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIP---NMSPAR 337 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~~p-~~r~~~-~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~---~~p~~r 337 (458)
.+.+..|+.+.+.-+...+.. .+-++. ..++. +++ .|++.-.+ ..-.++.||....+.+++. .||...
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-----stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-----STVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC-----CEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 477899999877665543211 222222 23333 555 58885433 2345777888878888775 455554
Q ss_pred CCCCCCCCCCCCcCCCCEEEEECC-EEEEEEcCCCeEEEE--eCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 338 GGAARGTEMPASAEAPPLVAVVNN-ELYAADYADMEVRKY--DKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~gg~~~~v~~y--d~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
.+. ...+ ......+| -||+..-..+.|.+| |+.++.-..+...+....... .+.+...++.|++.+
T Consensus 241 ~g~----~~~a-----aIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR--~F~i~~~g~~Liaa~ 309 (346)
T COG2706 241 TGT----NWAA-----AIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPR--DFNINPSGRFLIAAN 309 (346)
T ss_pred CCC----Ccee-----EEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCc--cceeCCCCCEEEEEc
Confidence 332 1100 01122244 577775444677776 555555555543332222111 133433445555555
Q ss_pred CCCCCCCCeeeEEEeecCCCCCCceEeec
Q 012701 415 GPKASGEGFIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 415 G~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 443 (458)
.+ +..+.+|..+..+.+-+.+..
T Consensus 310 -q~-----sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 310 -QK-----SDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred -cC-----CCcEEEEEEcCCCceEEeccc
Confidence 32 234677777777777777654
No 175
>PRK01742 tolB translocation protein TolB; Provisional
Probab=73.31 E-value=1.1e+02 Score=31.18 Aligned_cols=139 Identities=9% Similarity=-0.060 Sum_probs=65.9
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCE-EEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeE
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGS 245 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 245 (458)
.++.+|..+++-..+...+... ......-+++ |++..... ....+|.+|..++..+++..-...-. ...
T Consensus 229 ~i~i~dl~tg~~~~l~~~~g~~-----~~~~wSPDG~~La~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~ 298 (429)
T PRK01742 229 QLVVHDLRSGARKVVASFRGHN-----GAPAFSPDGSRLAFASSKD----GVLNIYVMGANGGTPSQLTSGAGNNT-EPS 298 (429)
T ss_pred EEEEEeCCCCceEEEecCCCcc-----CceeECCCCCEEEEEEecC----CcEEEEEEECCCCCeEeeccCCCCcC-CEE
Confidence 5777777766544444332211 0111223444 44332221 12358999998887776643221111 111
Q ss_pred EEeCC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 246 ASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 246 ~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
..-++ .|++....++ ...++.+|..++.-+.+.. .. ......-+|+..++.+. ..+..+|+.+
T Consensus 299 wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~---~~-~~~~~SpDG~~ia~~~~--------~~i~~~Dl~~ 362 (429)
T PRK01742 299 WSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG---RG-YSAQISADGKTLVMING--------DNVVKQDLTS 362 (429)
T ss_pred ECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC---CC-CCccCCCCCCEEEEEcC--------CCEEEEECCC
Confidence 12234 4555433222 2467777776654333321 11 11222335554333321 2367789999
Q ss_pred CceEEcC
Q 012701 325 ETWTEIP 331 (458)
Q Consensus 325 ~~W~~i~ 331 (458)
..+..+.
T Consensus 363 g~~~~lt 369 (429)
T PRK01742 363 GSTEVLS 369 (429)
T ss_pred CCeEEec
Confidence 8887664
No 176
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=73.12 E-value=1.2e+02 Score=31.37 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=60.3
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCC-c-EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQ-T-WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~-W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
+++ |++.|.+. ..+.+||...+ . =+.+..+.... ......-++++++.|+.+ .+|.++|..+.+
T Consensus 214 d~~-~l~s~s~D-----~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D-------~tvriWd~~~~~ 279 (456)
T KOG0266|consen 214 DGS-YLLSGSDD-----KTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD-------GTVRIWDVRTGE 279 (456)
T ss_pred CCc-EEEEecCC-----ceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC-------CcEEEEeccCCe
Confidence 444 55555432 46888888444 2 23333333333 222223466888988876 468889998844
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
-... +..-.... ......-++.+++.+..++.+.+||..+..-.
T Consensus 280 ~~~~--l~~hs~~i------------s~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 280 CVRK--LKGHSDGI------------SGLAFSPDGNLLVSASYDGTIRVWDLETGSKL 323 (456)
T ss_pred EEEe--eeccCCce------------EEEEECCCCCEEEEcCCCccEEEEECCCCcee
Confidence 3322 11111111 00112236677777777889999999887743
No 177
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=72.81 E-value=1.2e+02 Score=31.42 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=69.2
Q ss_pred CCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEE
Q 012701 286 NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNEL 363 (458)
Q Consensus 286 ~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (458)
..|...+.|.. +|++ |.+|.. -.+|..|+. ..|..-+.+-.. -.|..|.+.. ......+|++
T Consensus 315 g~Rv~~tsC~~nrdg~~-iAagc~------DGSIQ~W~~--~~~~v~p~~~vk-~AH~~g~~It------si~FS~dg~~ 378 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKL-IAAGCL------DGSIQIWDK--GSRTVRPVMKVK-DAHLPGQDIT------SISFSYDGNY 378 (641)
T ss_pred CcccCceeeecCCCcch-hhhccc------CCceeeeec--CCcccccceEee-eccCCCCcee------EEEeccccch
Confidence 44555555544 5777 555543 135777776 455554443222 2222333331 1234457777
Q ss_pred EEEEcCCCeEEEEeCCC-----CceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCc
Q 012701 364 YAADYADMEVRKYDKER-----RLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQW 438 (458)
Q Consensus 364 yv~gg~~~~v~~yd~~~-----~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W 438 (458)
++--|..+.+.+||+.+ +.|+-+..+-... -++..-+++|++.|-..-.+.....+..|+. .+.
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~t-------dc~FSPd~kli~TGtS~~~~~~~g~L~f~d~----~t~ 447 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGT-------DCCFSPDDKLILTGTSAPNGMTAGTLFFFDR----MTL 447 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCC-------ccccCCCceEEEecccccCCCCCceEEEEec----cce
Confidence 77767788888888865 3455444322211 2244567899998865444333333444332 445
Q ss_pred eEeeccC
Q 012701 439 NLLARKQ 445 (458)
Q Consensus 439 ~~l~~~p 445 (458)
..+..++
T Consensus 448 d~v~ki~ 454 (641)
T KOG0772|consen 448 DTVYKID 454 (641)
T ss_pred eeEEEec
Confidence 5544433
No 178
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=71.98 E-value=1e+02 Score=32.96 Aligned_cols=155 Identities=19% Similarity=0.105 Sum_probs=82.7
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCCc-eeeCCCCCCCCceeeEE---EeCCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTNS-WSSGMRMNAPRCLFGSA---SLGEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~---~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
.-++.+.++|-. ..-.+|...+.-+. -+.+..+|..+...+.. .-+++++++- ....+++.++.+
T Consensus 391 SPdg~~Ia~st~-----~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~ 459 (691)
T KOG2048|consen 391 SPDGNLIAISTV-----SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELE 459 (691)
T ss_pred CCCCCEEEEeec-----cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe------cccceeEEEEec
Confidence 335666666632 22234544443332 34456666655433333 3367777774 224678889999
Q ss_pred CCcEEEcCCCCCC-Cc--ceeEE-E-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC-CCCCCCCCCCCCCCCC
Q 012701 275 TQTWKVLPSMKNP-RK--MCSGV-F-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPA 348 (458)
Q Consensus 275 t~~W~~~~~~p~~-r~--~~~~~-~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~~~~ 348 (458)
+.+.+.+.+.... .. .+..+ . .++-|-++++. ..|++||+++.+-..+.. ++.....+
T Consensus 460 ~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--------g~I~v~nl~~~~~~~l~~rln~~vTa~-------- 523 (691)
T KOG2048|consen 460 TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--------GQIFVYNLETLESHLLKVRLNIDVTAA-------- 523 (691)
T ss_pred CcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--------ceEEEEEcccceeecchhccCcceeee--------
Confidence 8888776543222 11 12222 2 35556666543 368999999998777663 33211111
Q ss_pred CcCCCCEEEEECCEEEEEEcCCCeEEEEeCCC---CceEEe
Q 012701 349 SAEAPPLVAVVNNELYAADYADMEVRKYDKER---RLWFTI 386 (458)
Q Consensus 349 ~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~---~~W~~v 386 (458)
+ ......+.|.+.. .++.++.||++. +.|...
T Consensus 524 -~----~~~~~~~~lvvat-s~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 524 -A----FSPFVRNRLVVAT-SNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred -e----ccccccCcEEEEe-cCCeEEEEecchhhhhhhhhc
Confidence 0 1112344555543 567888888844 345443
No 179
>PRK04043 tolB translocation protein TolB; Provisional
Probab=71.10 E-value=1.3e+02 Score=30.84 Aligned_cols=152 Identities=7% Similarity=-0.081 Sum_probs=85.4
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCC-EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
..+++.+|..+++=..+...+.... .....-++ +|++.-... ...++|++|..++.++++...+..-...
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g~~~-----~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~~~~~d~~p 282 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQGMLV-----VSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITNYPGIDVNG 282 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCCcEE-----eeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEcccCCCccCcc
Confidence 4678999998876666654222110 01122233 554443221 2358999999999999886554311111
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCC--cccceEEEEE
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDS--KVLTCGEEYD 321 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~--~~~~~v~~yd 321 (458)
.-.-.+.+||+.-...+ ...++++|..++..+++..-.. .. ....-+|+..++-....... .....++.+|
T Consensus 283 ~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d 355 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS 355 (419)
T ss_pred EECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence 11112456776654322 2579999999998877653211 22 23344665444433321111 1235789999
Q ss_pred CCCCceEEcCC
Q 012701 322 LETETWTEIPN 332 (458)
Q Consensus 322 ~~~~~W~~i~~ 332 (458)
+.++.++.+..
T Consensus 356 ~~~g~~~~LT~ 366 (419)
T PRK04043 356 TNSDYIRRLTA 366 (419)
T ss_pred CCCCCeEECCC
Confidence 99999988875
No 180
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=70.98 E-value=12 Score=36.27 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=41.8
Q ss_pred EEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 355 LVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
+.-.++|+||+.....+++..+|+++++...|..+|.... |+++. |.+.++|-.
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-----GL~f~---G~llvVgmS 260 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-----GLAFA---GDFAFVGLS 260 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-----cccee---CCEEEEEec
Confidence 3456799999999888999999999999999998887543 34443 556666643
No 181
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=69.92 E-value=1e+02 Score=29.21 Aligned_cols=207 Identities=14% Similarity=0.233 Sum_probs=98.0
Q ss_pred EEEeCCEEEEE--cCCCCCcCccceEEEEEcCC-CceeeC---CCC----CCC-CceeeEEEeCCEEEEEeccC-CCCCc
Q 012701 197 SLAVGTELLVF--GRELTAHHISHVIYRYSILT-NSWSSG---MRM----NAP-RCLFGSASLGEIAILAGGSD-LEGNI 264 (458)
Q Consensus 197 ~~~~~~~lyv~--GG~~~~~~~~~~v~~yd~~t-~~W~~~---~~~----p~~-r~~~~~~~~~~~lyv~GG~~-~~~~~ 264 (458)
.++.++-||.- +|........+.-|+=+... ++|+.. .++ |.- -..+++.+++++||.+--.. -....
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 46778888853 43322223455667766654 578542 332 221 23356778899999875432 22233
Q ss_pred cCeEEEEe---CCCCcEEE--cCCCCC-------CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcC-
Q 012701 265 LSSAEMYN---SETQTWKV--LPSMKN-------PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP- 331 (458)
Q Consensus 265 ~~~v~~yd---~~t~~W~~--~~~~p~-------~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~- 331 (458)
+...+.|| ...+.|+. ++..|. .-.-|+.+.+++.=|.+|=.+|.....--.+..| ++.|..-.
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yf---s~~~~sp~~ 177 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYF---SDAFASPGV 177 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEE---TTTTT-TT-
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEe---cccccCCcc
Confidence 44555665 35677865 333333 2335677788888888875554332222223333 12221110
Q ss_pred ----CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEc------CCCeEEEEeCCCCceEEeccCCCccCCCCcccE
Q 012701 332 ----NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADY------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGL 401 (458)
Q Consensus 332 ----~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~ 401 (458)
.+|..... ..+-|++-.++|.||+..- ..+.+.+-+.....|..+. +|..... -.+
T Consensus 178 ~vrr~i~sey~~----------~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nvHh---tnl 243 (367)
T PF12217_consen 178 FVRRIIPSEYER----------NASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNVHH---TNL 243 (367)
T ss_dssp -EEEE--GGG-T----------TEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT---S---S--
T ss_pred eeeeechhhhcc----------ccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-ccccccc---cCC
Confidence 01111111 1122367778999999852 1256777788888898874 4433221 136
Q ss_pred EEEEeCCEEEEEcCCCCCC
Q 012701 402 AFRACGDRLIVIGGPKASG 420 (458)
Q Consensus 402 a~~~~~~~lyv~GG~~~~~ 420 (458)
.++..++.||+||-.+..+
T Consensus 244 PFakvgD~l~mFgsERA~~ 262 (367)
T PF12217_consen 244 PFAKVGDVLYMFGSERAEN 262 (367)
T ss_dssp -EEEETTEEEEEEE-SSTT
T ss_pred CceeeCCEEEEEecccccc
Confidence 6888999999999766543
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=69.91 E-value=98 Score=29.05 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=49.3
Q ss_pred CcEEEcCCCCC-----CCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCC
Q 012701 276 QTWKVLPSMKN-----PRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPAS 349 (458)
Q Consensus 276 ~~W~~~~~~p~-----~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~ 349 (458)
..|+..++|.. |-.+.-.+ -..+.|+..||.. .++..|+++++.+..-. -+..+-+
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~--------~~y~~dlE~G~i~r~~r-GHtDYvH--------- 160 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG--------VIYQVDLEDGRIQREYR-GHTDYVH--------- 160 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe--------EEEEEEecCCEEEEEEc-CCcceee---------
Confidence 35887776644 22222122 1357788888743 68899999998765321 1111222
Q ss_pred cCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 350 AEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 350 ~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
+++.. +++ .+-|+.++.+.+||..+.+=..
T Consensus 161 -----~vv~R~~~~q-ilsG~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 161 -----SVVGRNANGQ-ILSGAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred -----eeeecccCcc-eeecCCCccEEEEeccccceeE
Confidence 23322 223 3346677899999998876443
No 183
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=68.93 E-value=1.1e+02 Score=29.25 Aligned_cols=143 Identities=13% Similarity=0.124 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.-.|.| ...+++..||..+..=-.+..--. |.-..++.+ + +-+++-+|.+ ..+-++|+.+-
T Consensus 116 dn~qivSG------SrDkTiklwnt~g~ck~t~~~~~~-~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~ 182 (315)
T KOG0279|consen 116 DNRQIVSG------SRDKTIKLWNTLGVCKYTIHEDSH-REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNC 182 (315)
T ss_pred CCceeecC------CCcceeeeeeecccEEEEEecCCC-cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCc
Confidence 44455555 255678888887775444332211 333334333 2 4566777766 45778888776
Q ss_pred cEEEcCCCCCCCc---ceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 277 TWKVLPSMKNPRK---MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 277 ~W~~~~~~p~~r~---~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
+=. .+-.+.. ....+..||.+...||.++ .+.-+|+...+= +-.+.....-+
T Consensus 183 ~l~---~~~~gh~~~v~t~~vSpDGslcasGgkdg-------~~~LwdL~~~k~--lysl~a~~~v~------------- 237 (315)
T KOG0279|consen 183 QLR---TTFIGHSGYVNTVTVSPDGSLCASGGKDG-------EAMLWDLNEGKN--LYSLEAFDIVN------------- 237 (315)
T ss_pred chh---hccccccccEEEEEECCCCCEEecCCCCc-------eEEEEEccCCce--eEeccCCCeEe-------------
Confidence 422 2222222 2223456999999999873 356677765542 21222222222
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+++..-++.++.-+....|.+||.+++.
T Consensus 238 -sl~fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 238 -SLCFSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred -eEEecCCceeEeeccCCceEEEeccchh
Confidence 5677778877776677789999988875
No 184
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.62 E-value=52 Score=30.14 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=63.9
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC
Q 012701 292 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 369 (458)
Q Consensus 292 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~ 369 (458)
.....+|+||.--|.-+ ...+.++|+.+.+ |++--+ |....+. .++..++.+|.+...
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~-~~~~FgE--------------Git~~gd~~y~LTw~ 109 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLA-PDTVFGE--------------GITKLGDYFYQLTWK 109 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecC-Ccccccc--------------ceeeccceEEEEEec
Confidence 34567888888877653 3468899998654 544222 2333444 789999999999988
Q ss_pred CCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 370 DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 370 ~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
.+..++||+.+ ..+++..+.... ||| ++.-+..|++--|..
T Consensus 110 egvaf~~d~~t--~~~lg~~~y~Ge---GWg--Lt~d~~~LimsdGsa 150 (262)
T COG3823 110 EGVAFKYDADT--LEELGRFSYEGE---GWG--LTSDDKNLIMSDGSA 150 (262)
T ss_pred cceeEEEChHH--hhhhcccccCCc---cee--eecCCcceEeeCCce
Confidence 88899999754 445555554432 455 344555566555543
No 185
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=66.21 E-value=1.9e+02 Score=31.00 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=46.4
Q ss_pred EEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 355 LVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++..+.....+.|-..+.|..||....+-.+--..-... -.++++.++ .-++.+|.+. .+..|....
T Consensus 209 Sv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad------Vl~Lav~~~~d~vfsaGvd~------~ii~~~~~~ 276 (691)
T KOG2048|consen 209 SVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDAD------VLALAVADNEDRVFSAGVDP------KIIQYSLTT 276 (691)
T ss_pred EEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcc------eeEEEEcCCCCeEEEccCCC------ceEEEEecC
Confidence 445556666666667789999998876633221111111 133443333 3344444432 344555555
Q ss_pred CCCCceEeeccC-CCceeeeEEEee
Q 012701 434 GPPQWNLLARKQ-SANFVYNCAVMG 457 (458)
Q Consensus 434 ~~~~W~~l~~~p-~~~~~~~~~v~g 457 (458)
...+|....+.. .+..+-+-||++
T Consensus 277 ~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred CccceeeeccccCCcccceeeeeec
Confidence 555787665432 344444444443
No 186
>PTZ00420 coronin; Provisional
Probab=66.05 E-value=1.9e+02 Score=30.93 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 360 NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+|.+++.++..+.|.+||+.+.+
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~ 200 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQE 200 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCc
Confidence 67888888778899999998754
No 187
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=65.94 E-value=1.5e+02 Score=29.51 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=25.7
Q ss_pred EEEEECCEEEEEEcCCCeEEEEeCCCC-ceEEec
Q 012701 355 LVAVVNNELYAADYADMEVRKYDKERR-LWFTIG 387 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~~~v~~yd~~~~-~W~~v~ 387 (458)
++.+..+.+|+.|+..+.++.||.+++ ..+.+.
T Consensus 365 tl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~ 398 (460)
T KOG0285|consen 365 TLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ 398 (460)
T ss_pred eeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence 556667889999999999999998775 455554
No 188
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=65.32 E-value=1.6e+02 Score=29.89 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.|+..| .....+-+||..... .++.+|.--.-..+..+ .+--|++-+.+. .++..||+...+
T Consensus 358 DgLifgtg------t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~-- 422 (506)
T KOG0289|consen 358 DGLIFGTG------TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLK-- 422 (506)
T ss_pred CceEEecc------CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhc--
Confidence 56665555 245568889987765 44555542122222233 333455544442 348889988765
Q ss_pred EcCCCCCCCc-ceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC
Q 012701 280 VLPSMKNPRK-MCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA 336 (458)
Q Consensus 280 ~~~~~p~~r~-~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~ 336 (458)
..+..+.+-. ....+.+ -|+..+++|.+ -.|+.|+-.++.|+++..++..
T Consensus 423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~-------l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD-------LQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred ccceeeccccccceeEEEcCCCCeEEeecce-------eEEEEEecccccceeeehhhhc
Confidence 2333322222 2222333 46777777643 3578889999999999865543
No 189
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=65.22 E-value=92 Score=27.00 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=47.1
Q ss_pred EEeCCEEEEEeccCCCCCccCeEEEEeCCCCcE-EEcCCCCCCCc----ceeE-EEECCEEEEEccccCCCCcccceEEE
Q 012701 246 ASLGEIAILAGGSDLEGNILSSAEMYNSETQTW-KVLPSMKNPRK----MCSG-VFMDGKFYVIGGIGGSDSKVLTCGEE 319 (458)
Q Consensus 246 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~----~~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~ 319 (458)
+.++|.+|-++....... ...+..||..+.+. +.++ +|.... .... ++.+++|-++--.. ....-.||+
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~---~~~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCD---ETSKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEecc---CCccEEEEE
Confidence 567888888876543321 12689999999999 4443 343322 2223 23377887773221 112235555
Q ss_pred EE---CCCCceEEcCC
Q 012701 320 YD---LETETWTEIPN 332 (458)
Q Consensus 320 yd---~~~~~W~~i~~ 332 (458)
-+ -....|+++-.
T Consensus 77 m~~~~~~~~SWtK~~~ 92 (164)
T PF07734_consen 77 MKKYGYGKESWTKLFT 92 (164)
T ss_pred EeeeccCcceEEEEEE
Confidence 44 23778998643
No 190
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=64.22 E-value=1.3e+02 Score=28.37 Aligned_cols=130 Identities=20% Similarity=0.253 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
...+|-.+|..|++=...-.++.+....-...-+..|-+.-| .++.-+|+.+-.=-+--.||...... +..
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g--------ssV~Fwdaksf~~lKs~k~P~nV~SA-SL~ 233 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG--------SSVKFWDAKSFGLLKSYKMPCNVESA-SLH 233 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC--------ceeEEeccccccceeeccCccccccc-ccc
Confidence 345677788888765433233333322222222333433322 34444555432211112344432211 112
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcCCCe
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV---NNELYAADYADME 372 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~~~~ 372 (458)
-+..+||.||.+ --++.||..++. ++...-....+. ..++. +|++|+.|..++.
T Consensus 234 P~k~~fVaGged-------~~~~kfDy~Tge--Ei~~~nkgh~gp--------------VhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 234 PKKEFFVAGGED-------FKVYKFDYNTGE--EIGSYNKGHFGP--------------VHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CCCceEEecCcc-------eEEEEEeccCCc--eeeecccCCCCc--------------eEEEEECCCCceeeccCCCce
Confidence 245799999865 246788888765 222211122222 33433 8999999988887
Q ss_pred EEEEe
Q 012701 373 VRKYD 377 (458)
Q Consensus 373 v~~yd 377 (458)
|..|-
T Consensus 291 irlWQ 295 (334)
T KOG0278|consen 291 IRLWQ 295 (334)
T ss_pred EEEEE
Confidence 76654
No 191
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=64.17 E-value=2e+02 Score=30.53 Aligned_cols=164 Identities=14% Similarity=0.185 Sum_probs=85.3
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
..+.|.+|+..++.--.+-. ..-....++.+++.+.|.|.++ ..+-+||+.+.+- +..+...-..-...+
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~--~h~~~V~~v~~~~~~lvsgs~d------~~v~VW~~~~~~c--l~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLR--GHTGPVNCVQLDEPLLVSGSYD------GTVKVWDPRTGKC--LKSLSGHTGRVYSLI 378 (537)
T ss_pred CCceEEEEeccCcceEEEec--cccccEEEEEecCCEEEEEecC------ceEEEEEhhhcee--eeeecCCcceEEEEE
Confidence 45567777776543322110 0011123344577777887765 3578888885542 222221111111224
Q ss_pred ECC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEE
Q 012701 296 MDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 374 (458)
Q Consensus 296 ~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~ 374 (458)
+++ ..++-|+.+ ..|.++|+.+.. .-+-.+....... ......+++++-+..++.|.
T Consensus 379 ~~~~~~~~Sgs~D-------~~IkvWdl~~~~-~c~~tl~~h~~~v--------------~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 379 VDSENRLLSGSLD-------TTIKVWDLRTKR-KCIHTLQGHTSLV--------------SSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred ecCcceEEeeeec-------cceEeecCCchh-hhhhhhcCCcccc--------------cccccccceeEeccccccEE
Confidence 566 555555554 468889988775 1122222211111 23345677777788888999
Q ss_pred EEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 375 KYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 375 ~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
.||..+++=.++-.-+ .. .+..+...+...++..+..
T Consensus 437 ~WD~~~~~~~~~~~~~-~~-----~~v~~l~~~~~~il~s~~~ 473 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGR-HV-----GGVSALALGKEEILCSSDD 473 (537)
T ss_pred EeecccCceeeeeccC-Cc-----ccEEEeecCcceEEEEecC
Confidence 9998887755553322 11 1233334444666666543
No 192
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=63.74 E-value=1.6e+02 Score=29.98 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=46.4
Q ss_pred EEEeCCEEEEE---eccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEE
Q 012701 245 SASLGEIAILA---GGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 245 ~~~~~~~lyv~---GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 321 (458)
...+++.+=++ |-+...+...+.++++|..-+.--.+.-+-..-.-+++-++++++|++-=. ...-+.+.|
T Consensus 382 ~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr------qtDPlfviD 455 (603)
T COG4880 382 GDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR------QTDPLFVID 455 (603)
T ss_pred CcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe------ccCceEEEE
Confidence 33344444333 344444566789999999888766666665555566677889999988432 223356666
Q ss_pred CCC
Q 012701 322 LET 324 (458)
Q Consensus 322 ~~~ 324 (458)
++.
T Consensus 456 lsN 458 (603)
T COG4880 456 LSN 458 (603)
T ss_pred cCC
Confidence 654
No 193
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=62.78 E-value=1.2e+02 Score=27.32 Aligned_cols=74 Identities=18% Similarity=0.137 Sum_probs=45.0
Q ss_pred cCccceEEEEEcCCCceeeCC--CC---CCCCceeeEEEeCC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC
Q 012701 214 HHISHVIYRYSILTNSWSSGM--RM---NAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP 287 (458)
Q Consensus 214 ~~~~~~v~~yd~~t~~W~~~~--~~---p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 287 (458)
......+|++|..++.|..+- +. -.|. +..-.-+. .++++|..-+.-..-..+++|++.++.=+.+-+....
T Consensus 84 eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 84 EEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred cccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecccc
Confidence 346678999999999887652 22 1233 22222233 4555654333222246799999999998888776554
Q ss_pred Cc
Q 012701 288 RK 289 (458)
Q Consensus 288 r~ 289 (458)
..
T Consensus 162 kq 163 (200)
T PF15525_consen 162 KQ 163 (200)
T ss_pred ce
Confidence 33
No 194
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=62.71 E-value=1.4e+02 Score=28.08 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=91.6
Q ss_pred CCEEEEEc--CCCCC-cCccceEEEEEcC-CCceeeCCCCCCC--------CceeeEEEeCCEEEEEeccCCCCCccCeE
Q 012701 201 GTELLVFG--RELTA-HHISHVIYRYSIL-TNSWSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSSA 268 (458)
Q Consensus 201 ~~~lyv~G--G~~~~-~~~~~~v~~yd~~-t~~W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 268 (458)
+++|++|. +.... .......+..+.. -.+|+....++.. -.......-++.+++.. +..........
T Consensus 58 ~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~~~~~~~~~ 136 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHESGGSFSAF 136 (275)
T ss_dssp TSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEESSCEEEEE
T ss_pred CCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eeccccCcceE
Confidence 78888885 22111 1111222355555 3589876543211 11112333477887772 21111123344
Q ss_pred EEEeCCCC-cEEEcCCCCCC-CcceeEEE--ECCEEEEEccccCCCCcccceEEEEECC-CCceEEcC--CCCCCCCCCC
Q 012701 269 EMYNSETQ-TWKVLPSMKNP-RKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIP--NMSPARGGAA 341 (458)
Q Consensus 269 ~~yd~~t~-~W~~~~~~p~~-r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i~--~~p~~r~~~~ 341 (458)
..|....+ +|+.....+.. .......+ -+|+|+++.... ... .....+-.. -.+|+... .+|......
T Consensus 137 ~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~---~~~~~~S~D~G~TWs~~~~~~~~~~~~~~- 211 (275)
T PF13088_consen 137 VYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GND---DIYISRSTDGGRTWSPPQPTNLPNPNSSI- 211 (275)
T ss_dssp EEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SST---EEEEEEESSTTSS-EEEEEEECSSCCEEE-
T ss_pred EEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CCC---cEEEEEECCCCCcCCCceecccCcccCCc-
Confidence 55555544 59887665422 22222322 378999886542 111 233334333 35799854 344443322
Q ss_pred CCCCCCCCcCCCCEEEEE-CCEEEEEEcC---CCe--EEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEE
Q 012701 342 RGTEMPASAEAPPLVAVV-NNELYAADYA---DME--VRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIV 412 (458)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~-~~~lyv~gg~---~~~--v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv 412 (458)
.+... +++++++... ... +..-.-..++|.....+........+|...+..-+++|+|
T Consensus 212 -------------~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 212 -------------SLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -------------EEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred -------------eEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 22332 6688887652 122 3333334778987765544331122343444444678886
No 195
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.53 E-value=97 Score=28.98 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.6
Q ss_pred EECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccC
Q 012701 358 VVNNELYAADYADMEVRKYDKERRLWFTIGRLPERAN 394 (458)
Q Consensus 358 ~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 394 (458)
--+|.||+.-...+.|+++|+.+++-..--.+|.++.
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 3478999998888999999999988655556776653
No 196
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=62.43 E-value=1.8e+02 Score=29.30 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=84.2
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEE--EeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA--SLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
.++++|++.+. .+.+.++|..+++-... .+..+.-+..+ ..++++||.-... ..+.+.++|..+++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~ 151 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNK 151 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCe
Confidence 47789999743 57789999766654332 22222223333 3367999995432 24788999999886
Q ss_pred EEE---cCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC----CCCCCCCCCCCCCCCC
Q 012701 278 WKV---LPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN----MSPARGGAARGTEMPA 348 (458)
Q Consensus 278 W~~---~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~----~p~~r~~~~~~~~~~~ 348 (458)
=.. +...| ...+ ..+.++|+.- ...+.+..+|+.+..-.. .. .+....-.
T Consensus 152 ~~~~~~vG~~P-----~~~a~~p~g~~vyv~~-------~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~-------- 210 (381)
T COG3391 152 VTATIPVGNTP-----TGVAVDPDGNKVYVTN-------SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPA-------- 210 (381)
T ss_pred EEEEEecCCCc-----ceEEECCCCCeEEEEe-------cCCCeEEEEeCCCcceec-cccccccccCCCCc--------
Confidence 433 33333 2222 2355689874 233568888987765433 21 11111111
Q ss_pred CcCCCCEEEE--ECCEEEEEEcCC--CeEEEEeCCCCce
Q 012701 349 SAEAPPLVAV--VNNELYAADYAD--MEVRKYDKERRLW 383 (458)
Q Consensus 349 ~~~~~~~~~~--~~~~lyv~gg~~--~~v~~yd~~~~~W 383 (458)
.+++ -++++|+.-... +.+.+.|..++.=
T Consensus 211 ------~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 211 ------GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred ------eEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 2333 245688886555 5889999888653
No 197
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=60.67 E-value=1.6e+02 Score=28.19 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=27.0
Q ss_pred CEEEEEEcCCCeEEEEeC---CCCceEEeccCCCccCCCCcccEEEEEe--CCEEEEEcCCCCCC
Q 012701 361 NELYAADYADMEVRKYDK---ERRLWFTIGRLPERANSMNGWGLAFRAC--GDRLIVIGGPKASG 420 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~---~~~~W~~v~~lp~~~~~~~~~~~a~~~~--~~~lyv~GG~~~~~ 420 (458)
-+|+++.+ .+.+..|-+ .++..++--.+....... +|...+++ +-+|+++||.....
T Consensus 110 ~ELlvi~Y-~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp--~Gi~~~vy~p~h~LLlVgG~~~~~ 171 (282)
T PF15492_consen 110 YELLVINY-RGQLRSYLVSVGTNQGYQENHSFSFSSHYP--HGINSAVYHPKHRLLLVGGCEQNQ 171 (282)
T ss_pred eeEEEEec-cceeeeEEEEcccCCcceeeEEEEecccCC--CceeEEEEcCCCCEEEEeccCCCC
Confidence 36777754 334444443 223444332222222222 23333333 33799999987653
No 198
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=60.27 E-value=1.5e+02 Score=28.66 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=51.9
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
++.....||++ ..+-+||+.+++=..++.-..+...+.-+ ..+-.+.+.|.++ +++-.+|+..-.=
T Consensus 83 dgskVf~g~~D------k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~~~p 149 (347)
T KOG0647|consen 83 DGSKVFSGGCD------KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRSSNP 149 (347)
T ss_pred CCceEEeeccC------CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-------cceeecccCCCCe
Confidence 45555667766 45788999999877766433332222111 1122234444443 2344455543221
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC
Q 012701 328 TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 328 ~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
..--.||...+ .+-+...+.+++-....|.+|++++.
T Consensus 150 v~t~~LPeRvY-----------------a~Dv~~pm~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 150 VATLQLPERVY-----------------AADVLYPMAVVATAERHIAVYNLENP 186 (347)
T ss_pred eeeeeccceee-----------------ehhccCceeEEEecCCcEEEEEcCCC
Confidence 11112333322 12233445555556778888988654
No 199
>PRK10115 protease 2; Provisional
Probab=59.90 E-value=2.7e+02 Score=30.59 Aligned_cols=151 Identities=7% Similarity=-0.105 Sum_probs=78.7
Q ss_pred ccceEEEEEc--CCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCC-CCcEEEcCCCCCCCccee
Q 012701 216 ISHVIYRYSI--LTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSE-TQTWKVLPSMKNPRKMCS 292 (458)
Q Consensus 216 ~~~~v~~yd~--~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~~ 292 (458)
..+.++.|+. .+..|..+-+.+.. ..+.....++.+|+.--.+. ....+...+.. ++.|+.+-+....+.--.
T Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~---~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~ 320 (686)
T PRK10115 245 TTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHG---KNFGLYRTRVRDEQQWEELIPPRENIMLEG 320 (686)
T ss_pred ccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCC---CCceEEEecCCCcccCeEEECCCCCCEEEE
Confidence 3456777773 33444333222221 22233345678888854332 23456777776 578988765422233333
Q ss_pred EEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE-EE-CCEEEEE-Ec-
Q 012701 293 GVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA-VV-NNELYAA-DY- 368 (458)
Q Consensus 293 ~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~-~~~lyv~-gg- 368 (458)
....++.|++..-.. ....++++|+.++....+. ++.+.... . .... .. ++.+++. ..
T Consensus 321 ~~~~~~~l~~~~~~~-----g~~~l~~~~~~~~~~~~l~-~~~~~~~~----------~--~~~~~~~~~~~~~~~~ss~ 382 (686)
T PRK10115 321 FTLFTDWLVVEERQR-----GLTSLRQINRKTREVIGIA-FDDPAYVT----------W--IAYNPEPETSRLRYGYSSM 382 (686)
T ss_pred EEEECCEEEEEEEeC-----CEEEEEEEcCCCCceEEec-CCCCceEe----------e--ecccCCCCCceEEEEEecC
Confidence 445677777764332 2345788888766655544 11111111 0 0000 01 2344433 22
Q ss_pred -CCCeEEEEeCCCCceEEecc
Q 012701 369 -ADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 369 -~~~~v~~yd~~~~~W~~v~~ 388 (458)
....++.||..+++|+.+..
T Consensus 383 ~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 383 TTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCCCEEEEEECCCCcEEEEEe
Confidence 22789999999999987753
No 200
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.65 E-value=2.4e+02 Score=29.38 Aligned_cols=165 Identities=15% Similarity=0.116 Sum_probs=82.1
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCC-CCcceeEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN-PRKMCSGV 294 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~ 294 (458)
..||.++-.+..=..+.++. +...+++.+ .+....+|-.+ ..+++||..+.+ .+..|.. .....++.
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~------g~v~iwD~~~~k--~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD------GTVQIWDVKEQK--KTRTLRGSHASRVGSL 266 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC------CeEEEEehhhcc--ccccccCCcCceeEEE
Confidence 34666666666555544444 445555555 35555665433 568999988764 2223333 12222333
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 374 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~ 374 (458)
.-++.+...|..++ .|..+|.....=.. ..+ .+| . -+.+..-...++..++-||.++.+.
T Consensus 267 aW~~~~lssGsr~~-------~I~~~dvR~~~~~~-~~~----~~H----~----qeVCgLkws~d~~~lASGgnDN~~~ 326 (484)
T KOG0305|consen 267 AWNSSVLSSGSRDG-------KILNHDVRISQHVV-STL----QGH----R----QEVCGLKWSPDGNQLASGGNDNVVF 326 (484)
T ss_pred eccCceEEEecCCC-------cEEEEEEecchhhh-hhh----hcc----c----ceeeeeEECCCCCeeccCCCccceE
Confidence 45777888877652 35566664322100 001 111 0 0000011223667777788899999
Q ss_pred EEeCCCCceEE-eccCCCccCCCCcccEEEEEeCCEEEEEcCCC
Q 012701 375 KYDKERRLWFT-IGRLPERANSMNGWGLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 375 ~yd~~~~~W~~-v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~ 417 (458)
+||.....+.. +....... ..++.+-....|+.+||-.
T Consensus 327 Iwd~~~~~p~~~~~~H~aAV-----KA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHTAAV-----KALAWCPWQSGLLATGGGS 365 (484)
T ss_pred eccCCCccccEEEeccceee-----eEeeeCCCccCceEEcCCC
Confidence 99984433321 11111111 1234444566777777643
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=56.16 E-value=1.5e+02 Score=28.85 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=56.4
Q ss_pred ccceEEEEEcCCCc-eeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeC-CCCcEEEcCCCCCCCcc
Q 012701 216 ISHVIYRYSILTNS-WSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNS-ETQTWKVLPSMKNPRKM 290 (458)
Q Consensus 216 ~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~p~~r~~ 290 (458)
..+++++|.-..+. |.....+..--..-..+-. .++| |.++.+ ...+++.. ..++|.+..-+. |.+
T Consensus 30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d------rnayVw~~~~~~~WkptlvLl--RiN 100 (361)
T KOG1523|consen 30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD------RNAYVWTQPSGGTWKPTLVLL--RIN 100 (361)
T ss_pred CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC------CCccccccCCCCeeccceeEE--Eec
Confidence 45689999999998 9887665432222222222 3344 444544 23566666 778898655432 333
Q ss_pred eeEEEE----CCEEEEEccccCCCCcccceEEEEECCCCceE
Q 012701 291 CSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 291 ~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 328 (458)
.++..+ ++..|++|+.. .+-+|..|.-+.+=|.
T Consensus 101 rAAt~V~WsP~enkFAVgSga-----r~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 101 RAATCVKWSPKENKFAVGSGA-----RLISVCYYEQENDWWV 137 (361)
T ss_pred cceeeEeecCcCceEEeccCc-----cEEEEEEEecccceeh
Confidence 333322 45566666533 4556777777666554
No 202
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=56.04 E-value=1.8e+02 Score=27.43 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=55.7
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 343 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~ 343 (458)
..+-.||..++.=.++...-..+.+-.++ -.+|+....||.++ .+-++|+..-.-.+.=..+.+..
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-------t~kIWdlR~~~~qR~~~~~spVn----- 128 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-------TVKIWDLRSLSCQRNYQHNSPVN----- 128 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-------eEEEEeccCcccchhccCCCCcc-----
Confidence 35788999988522222222233444444 35899888888663 45667776521111111111110
Q ss_pred CCCCCCcCCCCEEEEECC-EEEEEEcCCCeEEEEeCCCCceEEeccCCCcc
Q 012701 344 TEMPASAEAPPLVAVVNN-ELYAADYADMEVRKYDKERRLWFTIGRLPERA 393 (458)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~-~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 393 (458)
.++..-+ .-.+.|-.++.|+++|+.++.-... .+|+..
T Consensus 129 -----------~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-liPe~~ 167 (311)
T KOG0315|consen 129 -----------TVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LIPEDD 167 (311)
T ss_pred -----------eEEecCCcceEEeecCCCcEEEEEccCCccccc-cCCCCC
Confidence 2333323 3344455678999999999876543 244443
No 203
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=55.97 E-value=1.7e+02 Score=28.43 Aligned_cols=134 Identities=10% Similarity=0.139 Sum_probs=64.7
Q ss_pred ccceEEEEEcCCCceeeCCCCCCC-CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
..+.+-.||+.+++=..++.-..| |..|-.-..+..+.+.|.++ .++-.+|+.... ++..+..|-..+++-
T Consensus 92 ~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD------KTlKfWD~R~~~--pv~t~~LPeRvYa~D 163 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD------KTLKFWDTRSSN--PVATLQLPERVYAAD 163 (347)
T ss_pred cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc------cceeecccCCCC--eeeeeeccceeeehh
Confidence 566788999999987776532222 22221111223345555554 344445655321 222222222222222
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEE-EEECCEEEEEEcCCC
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLV-AVVNNELYAADYADM 371 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~gg~~~ 371 (458)
+... +.|++-- -+.|.+|+++... ...+... ...-.. ++ +..++..|++|+..+
T Consensus 164 v~~p-m~vVata-------~r~i~vynL~n~~te~k~~~Sp-Lk~Q~R--------------~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 164 VLYP-MAVVATA-------ERHIAVYNLENPPTEFKRIESP-LKWQTR--------------CVACFQDKDGFALGSIEG 220 (347)
T ss_pred ccCc-eeEEEec-------CCcEEEEEcCCCcchhhhhcCc-ccceee--------------EEEEEecCCceEeeeecc
Confidence 2222 3333221 1347788886532 3233221 111111 33 444778889998888
Q ss_pred eEEEEeCCC
Q 012701 372 EVRKYDKER 380 (458)
Q Consensus 372 ~v~~yd~~~ 380 (458)
.+.+..+..
T Consensus 221 rv~iq~id~ 229 (347)
T KOG0647|consen 221 RVAIQYIDD 229 (347)
T ss_pred eEEEEecCC
Confidence 887776554
No 204
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=55.61 E-value=1.6e+02 Score=26.53 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=45.8
Q ss_pred ccCCCCCccCeEEEEeCCCCcEEEcCCCCCC-Ccce-eEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC
Q 012701 257 GSDLEGNILSSAEMYNSETQTWKVLPSMKNP-RKMC-SGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM 333 (458)
Q Consensus 257 G~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~-~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~ 333 (458)
|.+........++++|..++.|..+.--+.. ...+ -+. +-|..|.|+=|........-..+++|++.++.=+.+-+.
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeec
Confidence 3344444577899999999888755211111 1111 122 335556555453312222334689999999998887765
Q ss_pred CCC
Q 012701 334 SPA 336 (458)
Q Consensus 334 p~~ 336 (458)
...
T Consensus 159 ~dk 161 (200)
T PF15525_consen 159 KDK 161 (200)
T ss_pred ccc
Confidence 544
No 205
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=55.26 E-value=88 Score=33.84 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=38.9
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEE
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRK 375 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~ 375 (458)
.+|+..+.|+.+ ..|..||+.+.+- +..+-.- .+. ........+|.+++.||.+++|..
T Consensus 587 p~Gr~LaSg~ed-------~~I~iWDl~~~~~--v~~l~~H-t~t-----------i~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 587 PCGRYLASGDED-------GLIKIWDLANGSL--VKQLKGH-TGT-----------IYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred CCCceEeecccC-------CcEEEEEcCCCcc--hhhhhcc-cCc-----------eeEEEEecCCCEEEecCCCCeEEE
Confidence 367766666654 3477888887542 1111111 111 001234569999999999999999
Q ss_pred EeCCC
Q 012701 376 YDKER 380 (458)
Q Consensus 376 yd~~~ 380 (458)
||...
T Consensus 646 WD~~~ 650 (707)
T KOG0263|consen 646 WDLTK 650 (707)
T ss_pred EEchh
Confidence 98754
No 206
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=55.04 E-value=2e+02 Score=27.64 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=82.5
Q ss_pred CceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEe
Q 012701 194 DKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 194 ~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd 272 (458)
+.+....+.+.+++|+. ..+..-|-.-++|.+.- .+..|+.|.++.+ +.+=++.|- -..++.=+
T Consensus 47 ~ia~~~~g~~gwlVg~r-------gtiletdd~g~tw~qal-~~~gr~~f~sv~f~~~egw~vGe-------~sqll~T~ 111 (339)
T COG4447 47 DIAFTESGSHGWLVGGR-------GTILETDDGGITWAQAL-DFLGRHAFHSVSFLGMEGWIVGE-------PSQLLHTT 111 (339)
T ss_pred ceeEeecCcceEEEcCc-------ceEEEecCCcccchhhh-chhhhhheeeeeeecccccccCC-------cceEEEec
Confidence 34455668899999965 34666677778897753 2333666666554 333344422 13344445
Q ss_pred CCCCcEEEcCC-CCCCCcceeEEEECCEE-EEEccccCCCCcccceEEEEECCCCceEEcCCC--C--CCCCCCCCCCCC
Q 012701 273 SETQTWKVLPS-MKNPRKMCSGVFMDGKF-YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM--S--PARGGAARGTEM 346 (458)
Q Consensus 273 ~~t~~W~~~~~-~p~~r~~~~~~~~~g~l-yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~--p--~~r~~~~~~~~~ 346 (458)
-.-.+|.+++. ...+-...+..+++.+. |++|-+. .|+.-+-.-+.|+.+..- + .++.
T Consensus 112 DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G--------ail~T~DgGk~Wk~l~e~~v~~~~~n~-------- 175 (339)
T COG4447 112 DGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG--------AILKTTDGGKNWKALVEKAVGLAVPNE-------- 175 (339)
T ss_pred CCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc--------eEEEecCCcccHhHhcccccchhhhhh--------
Confidence 55678988873 33333444555666554 5665432 344445556789877531 1 2232
Q ss_pred CCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 347 PASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 347 ~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
...+.+|...++|-..+-...++.-...|
T Consensus 176 --------ia~s~dng~vaVg~rGs~f~T~~aGqt~~ 204 (339)
T COG4447 176 --------IARSADNGYVAVGARGSFFSTWGAGQTVW 204 (339)
T ss_pred --------hhhhccCCeEEEecCcceEecCCCCccEE
Confidence 23455677777764443333344444444
No 207
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=53.09 E-value=2e+02 Score=27.05 Aligned_cols=112 Identities=17% Similarity=0.250 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
.|.|+..||. ..+|..|..+++.++.=. ...-+-|+.+.-+ +--++.|+.++ ++.++|..|.+=.
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v 191 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHV 191 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcceeecCCCc------cEEEEecccccee
Confidence 4677777764 468999999998765311 1223344544422 22345666553 4777888887654
Q ss_pred Ec-C-----CCCCCC--cceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCC
Q 012701 280 VL-P-----SMKNPR--KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 334 (458)
Q Consensus 280 ~~-~-----~~p~~r--~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 334 (458)
.+ . +...|. ..-.+...+..-.|.||.. .+-.|++.+.+=+.+=++|
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--------~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--------KLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred EEeccccChhhcCcccCceeEEEeccCceEEecCCC--------ceeEEeccCCCceEEEecc
Confidence 32 1 111111 1223445566667777643 2344677666555443343
No 208
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.17 E-value=2.6e+02 Score=28.11 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=76.0
Q ss_pred cceEEEEEcCCCcee--eCCCCCCCCc-eeeE-EEeCC-EEEEEeccCCCCCccCeEEEEeCCCC-----cEEEcCCCCC
Q 012701 217 SHVIYRYSILTNSWS--SGMRMNAPRC-LFGS-ASLGE-IAILAGGSDLEGNILSSAEMYNSETQ-----TWKVLPSMKN 286 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~--~~~~~p~~r~-~~~~-~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~p~ 286 (458)
...|+++...|..-. .+-..+.... ...+ ..-++ .|++.-..... .+.++..|.... .|..+.+ +.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~l~~-~~ 276 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKLLSP-RE 276 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEEEEE-SS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEEEeC-CC
Confidence 567888888877554 2212222222 2222 22233 44443332211 378899999875 7887754 22
Q ss_pred CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc---eE-EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE
Q 012701 287 PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET---WT-EIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE 362 (458)
Q Consensus 287 ~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~---W~-~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (458)
.-..+.+...++.+|+....+ .....+..+++.+.. |. .+.+-.....-. .+...++.
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~----a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~--------------~~~~~~~~ 338 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDD----APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE--------------DVSLFKDY 338 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE--------------EEEEETTE
T ss_pred CceEEEEEccCCEEEEeeCCC----CCCcEEEEecccccccccceeEEcCCCCceeEE--------------EEEEECCE
Confidence 222333445699999986533 233567888888765 66 433222111122 45667888
Q ss_pred EEEEEc--CCCeEEEEeCC
Q 012701 363 LYAADY--ADMEVRKYDKE 379 (458)
Q Consensus 363 lyv~gg--~~~~v~~yd~~ 379 (458)
|++..- ....|.+||..
T Consensus 339 Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 339 LVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEEECCccEEEEEECC
Confidence 888753 34689999998
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=51.99 E-value=1.8e+02 Score=26.09 Aligned_cols=92 Identities=12% Similarity=0.074 Sum_probs=47.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
++++.|+-|. ....+..||.... .+..++........-.-+++..++||..+. ...+..||.. +.+.
T Consensus 71 g~~favi~g~-----~~~~v~lyd~~~~---~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~~wd~~--~~~~ 137 (194)
T PF08662_consen 71 GNEFAVIYGS-----MPAKVTLYDVKGK---KIFSFGTQPRNTISWSPDGRFLVLAGFGNL---NGDLEFWDVR--KKKK 137 (194)
T ss_pred CCEEEEEEcc-----CCcccEEEcCccc---EeEeecCCCceEEEECCCCCEEEEEEccCC---CcEEEEEECC--CCEE
Confidence 5566666443 3336888998532 222333222222222236777788886532 3568999988 4444
Q ss_pred cCCCCCCCcceeEEEECCEEEEEcc
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGG 305 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG 305 (458)
+.....+......-.-+|+.++...
T Consensus 138 i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 138 ISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eeccccCcEEEEEEcCCCCEEEEEE
Confidence 4443332221111123677666644
No 210
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=50.33 E-value=2.5e+02 Score=27.25 Aligned_cols=94 Identities=21% Similarity=0.296 Sum_probs=51.8
Q ss_pred CCEEEEEeccCCCCCccCeEEE-EeCCCCcEEEcCCCCCCCcceeEEEE------CCEEEEEccccCCCCcccceEEEEE
Q 012701 249 GEIAILAGGSDLEGNILSSAEM-YNSETQTWKVLPSMKNPRKMCSGVFM------DGKFYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~-yd~~t~~W~~~~~~p~~r~~~~~~~~------~g~lyv~GG~~~~~~~~~~~v~~yd 321 (458)
++..++.||++.. --+|. |.-..|.|..- +|++|++ |+...+..|.+ +.+..||
T Consensus 58 ~gs~~aSgG~Dr~----I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-------k~v~~wD 118 (338)
T KOG0265|consen 58 DGSCFASGGSDRA----IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-------KTVRGWD 118 (338)
T ss_pred CCCeEeecCCcce----EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-------ceEEEEe
Confidence 5677888887632 11222 55566777643 5666654 33333333332 4688899
Q ss_pred CCCCceEEcC--------CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 322 LETETWTEIP--------NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 322 ~~~~~W~~i~--------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.++++=..-- .+++.|. +-.+..-|..+..+..||..++.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rr---------------------g~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRR---------------------GPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred cccceeeehhccccceeeecCcccc---------------------CCeEEEecCCCceEEEEeecccc
Confidence 9887643211 1121111 22344445566789999987654
No 211
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=50.04 E-value=1.6e+02 Score=30.22 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=30.0
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
...+-.+|..|++=..--.+ .. -..++.. +..+|++||.+ ..+..||..++.
T Consensus 279 D~~lKlwDtETG~~~~~f~~--~~-~~~cvkf~pd~~n~fl~G~sd------~ki~~wDiRs~k 333 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL--DK-VPTCVKFHPDNQNIFLVGGSD------KKIRQWDIRSGK 333 (503)
T ss_pred ceeeeeeccccceEEEEEec--CC-CceeeecCCCCCcEEEEecCC------CcEEEEeccchH
Confidence 34566778888764332111 11 1122222 35899999977 457778888775
No 212
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=49.05 E-value=12 Score=37.79 Aligned_cols=47 Identities=11% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCCCCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEE
Q 012701 100 SDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELY 146 (458)
Q Consensus 100 ~~~~~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y 146 (458)
.+...+.-.||.|++.+++..|-...+.+.+-+|+.|..++.++.=|
T Consensus 66 ~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~ 112 (483)
T KOG4341|consen 66 ADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCW 112 (483)
T ss_pred hhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccc
Confidence 35666677999999999999999999999999999999888775533
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=48.36 E-value=3.1e+02 Score=27.89 Aligned_cols=146 Identities=8% Similarity=-0.057 Sum_probs=70.8
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM 296 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~ 296 (458)
...++++|......+.+..-..+-....-.--+.+|++. .... + ...++++|+.+++=+.+...+.. .......-
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~-s~~~-~--~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SP 249 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYV-SFES-K--KPVVYVHDLATGRRRVVANFKGS-NSAPAWSP 249 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEE-EccC-C--CcEEEEEECCCCCEEEeecCCCC-ccceEECC
Confidence 346888887554444443222111111111123344433 2221 1 25699999998875555443321 11222233
Q ss_pred CC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE-EEEEEc--CCCe
Q 012701 297 DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE-LYAADY--ADME 372 (458)
Q Consensus 297 ~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~gg--~~~~ 372 (458)
|| +|++....+ ....++.+|+.+...+.+..-... ... ....-+|+ |+.... ....
T Consensus 250 DG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~-~~~--------------~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 250 DGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSSGI-DTE--------------PFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred CCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCCCC-CcC--------------eEEcCCCCEEEEEecCCCCcE
Confidence 55 454433322 125688999987776665432111 111 12222444 444332 2346
Q ss_pred EEEEeCCCCceEEec
Q 012701 373 VRKYDKERRLWFTIG 387 (458)
Q Consensus 373 v~~yd~~~~~W~~v~ 387 (458)
++.+|..++..+.+.
T Consensus 310 Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 310 IYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEECCCCceEEEe
Confidence 888888877777664
No 214
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=48.00 E-value=38 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=23.8
Q ss_pred CeEEEEeCCCCceEEec-cCCCccCCCCcccEEEEEeCCEEEEE
Q 012701 371 MEVRKYDKERRLWFTIG-RLPERANSMNGWGLAFRACGDRLIVI 413 (458)
Q Consensus 371 ~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~lyv~ 413 (458)
+.+++||+.+++.+.+. .|..+. |.++..-+..|+|.
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fpN------GVals~d~~~vlv~ 74 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFPN------GVALSPDESFVLVA 74 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE------EEEE-TTSSEEEEE
T ss_pred cCEEEEECCCCeEEEehhCCCccC------eEEEcCCCCEEEEE
Confidence 78999999999997774 554443 35443334455554
No 215
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=48.00 E-value=3.1e+02 Score=28.08 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.4
Q ss_pred EEEECCEEEEEEcCCCeEEEEeCCCCceEEeccC
Q 012701 356 VAVVNNELYAADYADMEVRKYDKERRLWFTIGRL 389 (458)
Q Consensus 356 ~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~l 389 (458)
...+++.+|++|+ +++|+|| .|+|+.|+.+
T Consensus 571 A~fi~dylY~vg~--~ev~~ld--enswe~Vge~ 600 (603)
T COG4880 571 AFFIKDYLYLVGG--NEVWKLD--ENSWEVVGEA 600 (603)
T ss_pred eEEecceEEEecc--ceeEEec--cchHhhhhhe
Confidence 4667999999987 7899998 5789888754
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=47.91 E-value=1.7e+02 Score=29.35 Aligned_cols=93 Identities=16% Similarity=0.048 Sum_probs=52.2
Q ss_pred ccceEEEEEcCCCce-eeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce
Q 012701 216 ISHVIYRYSILTNSW-SSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC 291 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 291 (458)
..+.+.+.|..|++= .+++. ....|..... +.++||++. + ..+-++|+.+++ .+...+......
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~r-d------g~vsviD~~~~~--~v~~i~~G~~~~ 81 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANR-D------GTVSVIDLATGK--VVATIKVGGNPR 81 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEEET-T------SEEEEEETTSSS--EEEEEE-SSEEE
T ss_pred CCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcC-C------CeEEEEECCccc--EEEEEecCCCcc
Confidence 346788889888653 33332 2222443333 468999853 2 468899999987 333444444434
Q ss_pred eEE-EECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 292 SGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 292 ~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
..+ .-+|+..+++.+. .+.+.++|.++.+
T Consensus 82 ~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle 111 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYE------PGTVSVIDAETLE 111 (369)
T ss_dssp EEEE--TTTEEEEEEEE------TTEEEEEETTT--
T ss_pred eEEEcCCCCEEEEEecC------CCceeEecccccc
Confidence 443 4577766665543 2468889988865
No 217
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=47.58 E-value=2.4e+02 Score=27.28 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCCcCccceEEE---EEcCCCceeeCCCCCCCCceeeEEEe------CCEEEEEeccCCCCCccCeEEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYR---YSILTNSWSSGMRMNAPRCLFGSASL------GEIAILAGGSDLEGNILSSAEMY 271 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~---yd~~t~~W~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~y 271 (458)
+|..++.||.. ..|+. |.-..|-|..- +|..|++ ++..++..|.+ ..+..|
T Consensus 58 ~gs~~aSgG~D------r~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD------k~v~~w 117 (338)
T KOG0265|consen 58 DGSCFASGGSD------RAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD------KTVRGW 117 (338)
T ss_pred CCCeEeecCCc------ceEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC------ceEEEE
Confidence 45566667653 33433 44556667543 4555554 34444554544 568889
Q ss_pred eCCCCcE
Q 012701 272 NSETQTW 278 (458)
Q Consensus 272 d~~t~~W 278 (458)
|.++++=
T Consensus 118 D~~tG~~ 124 (338)
T KOG0265|consen 118 DAETGKR 124 (338)
T ss_pred eccccee
Confidence 9999864
No 218
>PF13013 F-box-like_2: F-box-like domain
Probab=46.98 E-value=15 Score=29.89 Aligned_cols=29 Identities=3% Similarity=-0.037 Sum_probs=26.0
Q ss_pred CCCCChhHHHHhhcccCcccchhhhhccH
Q 012701 106 IQPIGRDNSISCLIRCSRSDYGSIASLNQ 134 (458)
Q Consensus 106 ~~~LP~dl~~~iL~rlp~~~~~~l~~Vck 134 (458)
+..||+||++.|+-.+....+..+-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 78899999999999999998888877776
No 219
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=46.24 E-value=2.9e+02 Score=26.93 Aligned_cols=137 Identities=15% Similarity=0.080 Sum_probs=72.6
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc-EEEcC----CCCCCCcc
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLP----SMKNPRKM 290 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~----~~p~~r~~ 290 (458)
.-+.+++||+.++.=+... +|.........-.++.|+++ -..+..++++++. |+.+. ..+..|.+
T Consensus 45 ~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCceEEEE-CCCCcccceeecCCCeEEEE---------ccccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 3456888888866433322 11111212222224455555 1345566665443 35543 23445555
Q ss_pred eeEEEECCEEEEEccc----cCCCCcccceEEEEECCCCceEEcC-C-CCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-E
Q 012701 291 CSGVFMDGKFYVIGGI----GGSDSKVLTCGEEYDLETETWTEIP-N-MSPARGGAARGTEMPASAEAPPLVAVV-NN-E 362 (458)
Q Consensus 291 ~~~~~~~g~lyv~GG~----~~~~~~~~~~v~~yd~~~~~W~~i~-~-~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~ 362 (458)
=..+.-+|.||+---. ..........+|+||+. ....++. . +-.+ . +++.. ++ .
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~-N----------------Gla~SpDg~t 176 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIP-N----------------GLAFSPDGKT 176 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEec-C----------------ceEECCCCCE
Confidence 5566667888764322 11122344479999984 4555443 2 1111 1 33433 44 7
Q ss_pred EEEEEcCCCeEEEEeCCC
Q 012701 363 LYAADYADMEVRKYDKER 380 (458)
Q Consensus 363 lyv~gg~~~~v~~yd~~~ 380 (458)
+|+..-..+.+++|+...
T Consensus 177 ly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 177 LYVADTPANRIHRYDLDP 194 (307)
T ss_pred EEEEeCCCCeEEEEecCc
Confidence 899988788999998763
No 220
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=46.07 E-value=3.1e+02 Score=29.46 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=51.0
Q ss_pred cceEEEEEcCCCc-eeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcE------EEc--CCC
Q 012701 217 SHVIYRYSILTNS-WSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTW------KVL--PSM 284 (458)
Q Consensus 217 ~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W------~~~--~~~ 284 (458)
..+|-++++...- |.. ..+..-+-+..+.++ ++.+++.||.+ ..+.+||..+..= ..+ .++
T Consensus 94 DtTVK~W~~~~~~~~c~-stir~H~DYVkcla~~ak~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 94 DTTVKVWNAHKDNTFCM-STIRTHKDYVKCLAYIAKNNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred CceEEEeecccCcchhH-hhhhcccchheeeeecccCceeEEecCCC------ccEEEEEccCcchhhhhhccccccccC
Confidence 3456677776543 321 112222222233333 67889999987 3577788776632 222 233
Q ss_pred C-CCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 285 K-NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 285 p-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
+ .++..--+..+ .|.++|-||.. +++..||+.+++
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgte-------k~lr~wDprt~~ 204 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTE-------KDLRLWDPRTCK 204 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcc-------cceEEecccccc
Confidence 4 33332222233 34477777754 467889998865
No 221
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=45.92 E-value=3.8e+02 Score=28.11 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++...++||.. ..+++|.+.-..-.+..-+...|...+.+.+ .+.-|++.| .....+..||.+++.=
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~- 521 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG-----DASRKVVLYDVASREV- 521 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe-----ccCCcEEEEEcccCce-
Confidence 44455556542 3488888877655444444444555555555 333344433 2346788888887642
Q ss_pred EcCCC--CCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 280 VLPSM--KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 280 ~~~~~--p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
....+ ..+|-.+-+-.-++++...|+.+ ++|.+|+.+.
T Consensus 522 ~~~~w~FHtakI~~~aWsP~n~~vATGSlD-------t~Viiysv~k 561 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSPNNKLVATGSLD-------TNVIIYSVKK 561 (603)
T ss_pred ecceeeeeeeeEEEEEeCCCceEEEecccc-------ceEEEEEccC
Confidence 11111 11222222223477777777765 5688887754
No 222
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=45.10 E-value=3.6e+02 Score=27.67 Aligned_cols=145 Identities=13% Similarity=0.021 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEEC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMD 297 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~ 297 (458)
..++++|..++.=..+...+..-..+.-.-.+.+|.+..-.++ ...++++|..++.=..+.... ....+....-+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg----~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDG----SPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCC----CccEEEEcCCCCcceecccCC-ccccCccCCCC
Confidence 4577778777765555443322222222223444444433332 367999999988733332222 12223333445
Q ss_pred CEEEEEc-cccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC---CCeE
Q 012701 298 GKFYVIG-GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA---DMEV 373 (458)
Q Consensus 298 g~lyv~G-G~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~---~~~v 373 (458)
|+-+|+. ... -...|+.||++...=+.+..-....... ...-+|+.+++-.. .-.|
T Consensus 293 G~~ivf~Sdr~-----G~p~I~~~~~~g~~~~riT~~~~~~~~p---------------~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 293 GSKIVFTSDRG-----GRPQIYLYDLEGSQVTRLTFSGGGNSNP---------------VWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred CCEEEEEeCCC-----CCcceEEECCCCCceeEeeccCCCCcCc---------------cCCCCCCEEEEEeccCCceee
Confidence 5544443 222 2237899999887766654311111111 22224443333221 1568
Q ss_pred EEEeCCCCc-eEEec
Q 012701 374 RKYDKERRL-WFTIG 387 (458)
Q Consensus 374 ~~yd~~~~~-W~~v~ 387 (458)
..+|+.++. |+.+.
T Consensus 353 ~~~~~~~~~~~~~lt 367 (425)
T COG0823 353 DKNDLASGGKIRILT 367 (425)
T ss_pred EEeccCCCCcEEEcc
Confidence 899998877 88775
No 223
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=44.31 E-value=5e+02 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCcEEE-cCCCCCCCcceeEEEECCEEEEEcccc
Q 012701 266 SSAEMYNSETQTWKV-LPSMKNPRKMCSGVFMDGKFYVIGGIG 307 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~~g~lyv~GG~~ 307 (458)
+.+.+|......-.. +...-.| ..+.++..+|+..++||.+
T Consensus 76 ~tv~~y~fps~~~~~iL~Rftlp-~r~~~v~g~g~~iaagsdD 117 (933)
T KOG1274|consen 76 NTVLRYKFPSGEEDTILARFTLP-IRDLAVSGSGKMIAAGSDD 117 (933)
T ss_pred ceEEEeeCCCCCccceeeeeecc-ceEEEEecCCcEEEeecCc
Confidence 678888776665432 2222222 2344556678888887754
No 224
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=44.17 E-value=3e+02 Score=26.47 Aligned_cols=205 Identities=14% Similarity=0.172 Sum_probs=98.6
Q ss_pred CCEEEEEc-CCCCC-c----CccceEEEEEcCCCceeeC---C-CCCCCCceeeEEEe-C-------CEEEEEeccCCCC
Q 012701 201 GTELLVFG-RELTA-H----HISHVIYRYSILTNSWSSG---M-RMNAPRCLFGSASL-G-------EIAILAGGSDLEG 262 (458)
Q Consensus 201 ~~~lyv~G-G~~~~-~----~~~~~v~~yd~~t~~W~~~---~-~~p~~r~~~~~~~~-~-------~~lyv~GG~~~~~ 262 (458)
.+.|+|+- |.... . .....+..||+.|++-.+. + ....+.+...-.++ . +.+|+.--.
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~---- 86 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG---- 86 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT----
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCC----
Confidence 56788872 32111 1 2446799999999985332 2 22223444433333 2 378887321
Q ss_pred CccCeEEEEeCCCCc-EEEcCCCCCCCcceeEEEECCEEEEEc-cc---cCCCCcccceEEEEECCCC-ceEEcCC--CC
Q 012701 263 NILSSAEMYNSETQT-WKVLPSMKNPRKMCSGVFMDGKFYVIG-GI---GGSDSKVLTCGEEYDLETE-TWTEIPN--MS 334 (458)
Q Consensus 263 ~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~g~lyv~G-G~---~~~~~~~~~~v~~yd~~~~-~W~~i~~--~p 334 (458)
...+.+||..+++ |+.+.....+.........+|+.+-.. |. .......-.....|.+-+. ++-.++. +-
T Consensus 87 --~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~ 164 (287)
T PF03022_consen 87 --GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLR 164 (287)
T ss_dssp --TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHC
T ss_pred --cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhh
Confidence 2489999999975 777765444443444555666655332 21 1000000112344555433 3444431 10
Q ss_pred CCCCCCCC--CCCC-C--CCcCCCCEEE-EECCEEEEEEcCCCeEEEEeCCC----CceEEeccCCCccCCCCcccEEEE
Q 012701 335 PARGGAAR--GTEM-P--ASAEAPPLVA-VVNNELYAADYADMEVRKYDKER----RLWFTIGRLPERANSMNGWGLAFR 404 (458)
Q Consensus 335 ~~r~~~~~--~~~~-~--~~~~~~~~~~-~~~~~lyv~gg~~~~v~~yd~~~----~~W~~v~~lp~~~~~~~~~~~a~~ 404 (458)
.+...... .... . .......+.+ --+|.||+..-..+.|.++|+.+ .....+..-+.... |-.++.
T Consensus 165 ~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~----~pd~~~ 240 (287)
T PF03022_consen 165 DPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQ----WPDGLK 240 (287)
T ss_dssp STT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GS----SEEEEE
T ss_pred CccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceee----ccceee
Confidence 00000000 0000 0 0000001223 33778998887889999999988 56777765444222 445555
Q ss_pred EeC---CEEEEEcC
Q 012701 405 ACG---DRLIVIGG 415 (458)
Q Consensus 405 ~~~---~~lyv~GG 415 (458)
... +.||+.--
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 555 88998863
No 225
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=43.58 E-value=3e+02 Score=26.32 Aligned_cols=110 Identities=10% Similarity=0.173 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcC-CCceeeCCCCC--CCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSIL-TNSWSSGMRMN--APRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~p--~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
|.|+..+| ..+.+-+++.. .++|....-+- ..|.--.++.- .+++...|.++ ..+-+|.-..+.
T Consensus 27 g~ilAscg------~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD------~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 27 GVILASCG------TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD------ATVVIWKKEDGE 94 (312)
T ss_pred ceEEEeec------CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc------ceEEEeecCCCc
Confidence 33555554 34567777777 67786654332 33333333332 34433444443 456667777778
Q ss_pred EEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECC-CCceEEc
Q 012701 278 WKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEI 330 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i 330 (458)
|+.+..+-.+-...-.+ ..+|.+...-.++ ++++++... .++..-+
T Consensus 95 fecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-------KSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 95 FECVATLEGHENEVKCVAWSASGNYLATCSRD-------KSVWIWEIDEDDEFECI 143 (312)
T ss_pred eeEEeeeeccccceeEEEEcCCCCEEEEeeCC-------CeEEEEEecCCCcEEEE
Confidence 88776554333322222 3455555554433 456666554 3344443
No 226
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=43.51 E-value=3.8e+02 Score=27.49 Aligned_cols=108 Identities=12% Similarity=-0.037 Sum_probs=61.0
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
...++|++|..+++-.++......-....-.-.+.+|+..-...+ ...+++||++...=+.+..-..... +....
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----~p~I~~~~~~g~~~~riT~~~~~~~-~p~~S 334 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWS 334 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----CcceEEECCCCCceeEeeccCCCCc-CccCC
Confidence 345799999998874444333322222222233555555533222 2489999999887655543221111 34445
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCc-eEEcCC
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPN 332 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~ 332 (458)
-+|+.+++-+..+ . . ..+..+|+.++. |+.+..
T Consensus 335 pdG~~i~~~~~~~--g-~-~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 335 PDGDKIVFESSSG--G-Q-WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCCCEEEEEeccC--C-c-eeeEEeccCCCCcEEEccc
Confidence 5676666644321 1 1 568889998877 887763
No 227
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=43.08 E-value=4.6e+02 Score=28.59 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=57.7
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
...-+.-|++.|. ....|-.+|..++.=.++-.=..... .+.+. ..++-.+.|+.+ ..+.+||..++
T Consensus 542 ~FHPNs~Y~aTGS-----sD~tVRlWDv~~G~~VRiF~GH~~~V-~al~~Sp~Gr~LaSg~ed------~~I~iWDl~~~ 609 (707)
T KOG0263|consen 542 SFHPNSNYVATGS-----SDRTVRLWDVSTGNSVRIFTGHKGPV-TALAFSPCGRYLASGDED------GLIKIWDLANG 609 (707)
T ss_pred EECCcccccccCC-----CCceEEEEEcCCCcEEEEecCCCCce-EEEEEcCCCceEeecccC------CcEEEEEcCCC
Confidence 3345778888875 56678888888876544422121111 12222 234433444433 45788898876
Q ss_pred cEEEcCCCCCCCc-ceeE-EEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 277 TWKVLPSMKNPRK-MCSG-VFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 277 ~W~~~~~~p~~r~-~~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
+ .+..+..... ..+. ...+|.+.+.||.+ ++|-.||...
T Consensus 610 ~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-------nsV~lWD~~~ 650 (707)
T KOG0263|consen 610 S--LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-------NSVRLWDLTK 650 (707)
T ss_pred c--chhhhhcccCceeEEEEecCCCEEEecCCC-------CeEEEEEchh
Confidence 4 1122221111 1122 24689999999976 4566677653
No 228
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=42.27 E-value=4e+02 Score=27.36 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=31.8
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee--eEEE-eCCEEEEEeccCCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF--GSAS-LGEIAILAGGSDLE 261 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~--~~~~-~~~~lyv~GG~~~~ 261 (458)
++++.+.-.|+++|. ....+|.+...|+.--.+- .+.+.. +... .++..++.||.|+.
T Consensus 86 al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 86 ALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeecCCCceEEEeec-----ccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 345556667777764 4567888888776431110 111111 2222 26678888887743
No 229
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=41.09 E-value=93 Score=32.18 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=51.4
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE-EECCEEEEEEcCCCeE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA-VVNNELYAADYADMEV 373 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~lyv~gg~~~~v 373 (458)
.-||+-.++||.. .++-+||+.+-+=+.-..++..- -++.+++ ..+-++...-..++.|
T Consensus 474 ~pdgrtLivGGea-------stlsiWDLAapTprikaeltssa-------------paCyALa~spDakvcFsccsdGnI 533 (705)
T KOG0639|consen 474 LPDGRTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSA-------------PACYALAISPDAKVCFSCCSDGNI 533 (705)
T ss_pred cCCCceEEecccc-------ceeeeeeccCCCcchhhhcCCcc-------------hhhhhhhcCCccceeeeeccCCcE
Confidence 3489999999975 45677888765433322222210 0111222 2355555554566789
Q ss_pred EEEeCCCCceEEeccCCCccCCCCcccEEEEE--eCCEEEEEcCCCC
Q 012701 374 RKYDKERRLWFTIGRLPERANSMNGWGLAFRA--CGDRLIVIGGPKA 418 (458)
Q Consensus 374 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~--~~~~lyv~GG~~~ 418 (458)
.+||+.+.+- |..++.... |..+.. .+|.=+-.||.++
T Consensus 534 ~vwDLhnq~~--VrqfqGhtD-----GascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 534 AVWDLHNQTL--VRQFQGHTD-----GASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred EEEEccccee--eecccCCCC-----CceeEEecCCCceeecCCCcc
Confidence 9999987753 333332221 222222 2455555677654
No 230
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=40.17 E-value=52 Score=20.86 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=15.9
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILT 227 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 227 (458)
++.++.||+.+ ....++++|+.|
T Consensus 18 ~v~~g~vyv~~-------~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGT-------GDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE--------TTSEEEEEETT-
T ss_pred EEECCEEEEEc-------CCCEEEEEeCCC
Confidence 56688888886 345789999865
No 231
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=40.02 E-value=3.7e+02 Score=26.30 Aligned_cols=100 Identities=15% Similarity=0.275 Sum_probs=53.9
Q ss_pred EEEEE-CCEEEEEEcCC--CeEEEE-e-CCCCceEEeccCCCc------cCCCCcc-cEEEEEe---CCEEEEEcCCCCC
Q 012701 355 LVAVV-NNELYAADYAD--MEVRKY-D-KERRLWFTIGRLPER------ANSMNGW-GLAFRAC---GDRLIVIGGPKAS 419 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~--~~v~~y-d-~~~~~W~~v~~lp~~------~~~~~~~-~~a~~~~---~~~lyv~GG~~~~ 419 (458)
.++.. +|+|+++-... .....+ . -...+|+........ .....+. +..+..- +..++++......
T Consensus 202 ~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~g~~~ll~~~~~~~ 281 (351)
T cd00260 202 SVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLSRVWGNCPTRCGSGVQGSFITATIESGKKVMLLSRPNSP 281 (351)
T ss_pred EEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCccccccccccCCCCcccceEEEeEecCCCEEEEEeCCCCC
Confidence 67777 88998874332 333222 2 234689887543321 0111111 1222222 4467777755433
Q ss_pred CCCeeeEEEeecCCCCCCceEeeccCCCc--eeeeEEE
Q 012701 420 GEGFIELNSWVPSEGPPQWNLLARKQSAN--FVYNCAV 455 (458)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~W~~l~~~p~~~--~~~~~~v 455 (458)
.....+.+|.-+.+..+|.....+..+. ..|++..
T Consensus 282 -~~R~~l~l~~s~d~g~~w~~~~~i~~~~~~~~Ys~~~ 318 (351)
T cd00260 282 -DSRSNLTLWLTDNNGSRWLDVGPISNGTDGSGYSTLT 318 (351)
T ss_pred -CCCCceEEEEEeCCCceEEeeeeeccCCCceEEeeee
Confidence 3345566666555446999988776555 6676544
No 232
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=39.97 E-value=3.8e+02 Score=26.49 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=85.1
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc--ceeEEEECCEEEEEccccCCCCcccceEEEEECCCC-
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK--MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE- 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~- 325 (458)
+..||++..-+..+. -..+.+|+..++-+.+..-+.+.. .|.++.-+|++.+..-+. ...|-+|-+.++
T Consensus 51 ~~~LY~v~~~~~~gg--vaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------~g~v~v~p~~~dG 122 (346)
T COG2706 51 QRHLYVVNEPGEEGG--VAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------SGSVSVYPLQADG 122 (346)
T ss_pred CCEEEEEEecCCcCc--EEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------CceEEEEEcccCC
Confidence 347888876543322 345666777788887765443333 333334456555554443 345667766543
Q ss_pred c-eEEcC------CCCCCCCCCCCCCCCCCCcCCCCEEEEEC-CEEEEEEcCCCeEEEEeCCCCceEEec--cCCCccCC
Q 012701 326 T-WTEIP------NMSPARGGAARGTEMPASAEAPPLVAVVN-NELYAADYADMEVRKYDKERRLWFTIG--RLPERANS 395 (458)
Q Consensus 326 ~-W~~i~------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~gg~~~~v~~yd~~~~~W~~v~--~lp~~~~~ 395 (458)
. |..+. .-|..|-. .+... .....-+ +.|++..-..++|..|+.+.+.-+... .++.....
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~------~~h~H---~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQE------SPHVH---SANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred ccccceeeeecCCCCCCcccc------CCccc---eeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 1 22211 11222211 11100 0111223 466666666788999999877665543 23222211
Q ss_pred CCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 396 MNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 396 ~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
-++++..-+.-.|++.=.+ .++.+|.++....+.++|
T Consensus 194 ---RHi~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 194 ---RHIVFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ---ceEEEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEe
Confidence 1355555556678887432 255666665544555554
No 233
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.92 E-value=70 Score=18.67 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.9
Q ss_pred EEEE-ECCEEEEEEcCCCeEEEE
Q 012701 355 LVAV-VNNELYAADYADMEVRKY 376 (458)
Q Consensus 355 ~~~~-~~~~lyv~gg~~~~v~~y 376 (458)
.+++ -+|.||+.......|++|
T Consensus 6 gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEEEE
T ss_pred EEEEeCCCCEEEEECCCCEEEEC
Confidence 4555 478999999777888876
No 234
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=38.92 E-value=6.4e+02 Score=28.76 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=95.9
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe------C-CEEEEEecc----CCCCCccCeEEEEeCCC-CcEEEcCC
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL------G-EIAILAGGS----DLEGNILSSAEMYNSET-QTWKVLPS 283 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~------~-~~lyv~GG~----~~~~~~~~~v~~yd~~t-~~W~~~~~ 283 (458)
..+.+-+||..| .+.+......+...+...+ + +..|++|-. +........+.+|.... ++-+.+..
T Consensus 748 ~~s~l~vlD~nT--f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e 825 (1096)
T KOG1897|consen 748 EVSFLRVLDQNT--FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE 825 (1096)
T ss_pred eEEEEEEecCCc--eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee
Confidence 445567788754 4454444444433322222 2 466666642 11112234566666555 77788887
Q ss_pred CCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCCcCCCCEEEEECCE
Q 012701 284 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPASAEAPPLVAVVNNE 362 (458)
Q Consensus 284 ~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (458)
+.....-.+.+.++||+.+- .+ ..+-.|+..+++=-.+. ....+-..- .+-+.++.
T Consensus 826 ~~v~Gav~aL~~fngkllA~--In-------~~vrLye~t~~~eLr~e~~~~~~~~aL--------------~l~v~gde 882 (1096)
T KOG1897|consen 826 TVVKGAVYALVEFNGKLLAG--IN-------QSVRLYEWTTERELRIECNISNPIIAL--------------DLQVKGDE 882 (1096)
T ss_pred eeeccceeehhhhCCeEEEe--cC-------cEEEEEEccccceehhhhcccCCeEEE--------------EEEecCcE
Confidence 77766777778889998653 22 34666766555211111 111110000 33455788
Q ss_pred EEEEEcCC-CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 363 LYAADYAD-MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 363 lyv~gg~~-~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
|++.+-.. =.+..|+...+...++++--.+. |-.++..+++..|+.+
T Consensus 883 I~VgDlm~Sitll~y~~~eg~f~evArD~~p~-----Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 883 IAVGDLMRSITLLQYKGDEGNFEEVARDYNPN-----WMTAVEILDDDTYLGA 930 (1096)
T ss_pred EEEeeccceEEEEEEeccCCceEEeehhhCcc-----ceeeEEEecCceEEee
Confidence 88876433 36788999999999997543333 5577778888888765
No 235
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=37.86 E-value=2.5e+02 Score=23.78 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=56.7
Q ss_pred eecccCceeeEEEEEeccceEEEEecCCCcEEeC------CCCCCCccccccCceEEEe----CCEEEEEcCCCCCcCcc
Q 012701 148 LRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHL------PRMTSNECFMCSDKESLAV----GTELLVFGRELTAHHIS 217 (458)
Q Consensus 148 ~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l------~~~p~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~ 217 (458)
+|++.+. .|.|-.-....++..++|....=... .-+...+.-.+. ++..+ +..++++| ..
T Consensus 3 iGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~ital--aaG~l~~~~~~D~LliG-------t~ 72 (136)
T PF14781_consen 3 IGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITAL--AAGRLKPDDGRDCLLIG-------TQ 72 (136)
T ss_pred EEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEE--EEEecCCCCCcCEEEEe-------cc
Confidence 3444444 34555555567888888876531111 111111100000 00111 34677887 56
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc--EEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT--WKV 280 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 280 (458)
+.+..||...|+=---..++..-.......+ ...+.++||. .++.-||.+-+. |+.
T Consensus 73 t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn-------csi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 73 TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN-------CSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce-------EEEEEeCCCCcEEEEEe
Confidence 7899999998862211223322222222222 3467788873 456666665443 554
No 236
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=37.84 E-value=5.2e+02 Score=27.37 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=66.7
Q ss_pred ccceEEEEEcCCCceeeCCCC--C-CCCceeeEEEeCCEEEEEecc-----CCCCCccCeEEEEeCCCCcEEEcCCCCCC
Q 012701 216 ISHVIYRYSILTNSWSSGMRM--N-APRCLFGSASLGEIAILAGGS-----DLEGNILSSAEMYNSETQTWKVLPSMKNP 287 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~--p-~~r~~~~~~~~~~~lyv~GG~-----~~~~~~~~~v~~yd~~t~~W~~~~~~p~~ 287 (458)
....+++|+....+.+-.+.- | .....|++-..++.+-|+--. .......+.++++|..-+.=-.+..+-..
T Consensus 246 ~~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~g 325 (521)
T PF09826_consen 246 ESTTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPG 325 (521)
T ss_pred CceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCC
Confidence 345688888887766543321 1 224556777778877666432 22234568899999666666666666666
Q ss_pred CcceeEEEECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 288 RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 288 r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
-.-+++-+++++.|++- .+...-+++.|+..
T Consensus 326 E~IysvRF~Gd~~Y~VT------FrqvDPLfviDLsd 356 (521)
T PF09826_consen 326 ERIYSVRFMGDRAYLVT------FRQVDPLFVIDLSD 356 (521)
T ss_pred ceEEEEEEeCCeEEEEE------EeecCceEEEECCC
Confidence 66777889999999983 23344577777764
No 237
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=37.25 E-value=4.1e+02 Score=26.00 Aligned_cols=158 Identities=11% Similarity=0.102 Sum_probs=75.9
Q ss_pred CCCCCCCChhHHH-HhhcccCcccchhh--------------hhccHhHHHHhccCcEEEeecccCceeeEEEEEeccce
Q 012701 103 DSLIQPIGRDNSI-SCLIRCSRSDYGSI--------------ASLNQSFRSLIRSGELYRLRRLNGVIEHWVYFSCHLLE 167 (458)
Q Consensus 103 ~~l~~~LP~dl~~-~iL~rlp~~~~~~l--------------~~Vck~wr~lv~s~~~y~~gg~~~~~~~~l~~~~~~~~ 167 (458)
.|+|--|=|.+-+ ++|.+-|+..+..- -++.|.|+-+-....+..+ ...+ ...++.+......
T Consensus 162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsi-SfHP-sGefllvgTdHp~ 239 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSI-SFHP-SGEFLLVGTDHPT 239 (430)
T ss_pred CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeE-eecC-CCceEEEecCCCc
Confidence 4566666665432 56667776544321 2344445533222221111 1222 2235555555667
Q ss_pred EEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCC--ceeeE
Q 012701 168 WEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPR--CLFGS 245 (458)
Q Consensus 168 ~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r--~~~~~ 245 (458)
+..||..+-+-..-.. |...+..+....-..-.+.|||.|.. ...+-.||-.+++--. .+..+. ...++
T Consensus 240 ~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSk------DG~IklwDGVS~rCv~--t~~~AH~gsevcS 310 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASK------DGAIKLWDGVSNRCVR--TIGNAHGGSEVCS 310 (430)
T ss_pred eeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEecc------CCcEEeeccccHHHHH--HHHhhcCCceeee
Confidence 7889988766543222 33322111000001126799999854 3457778887765322 122222 22233
Q ss_pred EEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 246 ASL--GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 246 ~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+ +++.++..|.+ ..+..+.+.|++
T Consensus 311 a~Ftkn~kyiLsSG~D------S~vkLWEi~t~R 338 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKD------STVKLWEISTGR 338 (430)
T ss_pred EEEccCCeEEeecCCc------ceeeeeeecCCc
Confidence 333 55655666654 345556666664
No 238
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=37.20 E-value=4.1e+02 Score=26.02 Aligned_cols=117 Identities=12% Similarity=0.212 Sum_probs=0.0
Q ss_pred eCCCCcEEEcC--CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCC
Q 012701 272 NSETQTWKVLP--SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPAS 349 (458)
Q Consensus 272 d~~t~~W~~~~--~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~ 349 (458)
+-...+|+..| ..+..-..-.++.+++...+.||.+ ..|.+||..++. ++..+...-...
T Consensus 25 ~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssD-------etI~IYDm~k~~--qlg~ll~Hagsi--------- 86 (362)
T KOG0294|consen 25 CTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSD-------ETIHIYDMRKRK--QLGILLSHAGSI--------- 86 (362)
T ss_pred cccccceeeeccccccccccceeEEEecceeEeccCCC-------CcEEEEeccchh--hhcceeccccce---------
Q ss_pred cCCCCEEEEECCEE----EEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 350 AEAPPLVAVVNNEL----YAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 350 ~~~~~~~~~~~~~l----yv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
.+....... .+-|..++.|.+|+ .+.|..+..+.......++ .++...+.--+-+||
T Consensus 87 -----taL~F~~~~S~shLlS~sdDG~i~iw~--~~~W~~~~slK~H~~~Vt~--lsiHPS~KLALsVg~ 147 (362)
T KOG0294|consen 87 -----TALKFYPPLSKSHLLSGSDDGHIIIWR--VGSWELLKSLKAHKGQVTD--LSIHPSGKLALSVGG 147 (362)
T ss_pred -----EEEEecCCcchhheeeecCCCcEEEEE--cCCeEEeeeecccccccce--eEecCCCceEEEEcC
No 239
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=36.59 E-value=6.8e+02 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.049 Sum_probs=18.0
Q ss_pred cccCceeeEEEEEeccceEEEEecCCC
Q 012701 150 RLNGVIEHWVYFSCHLLEWEAFDPIRR 176 (458)
Q Consensus 150 g~~~~~~~~l~~~~~~~~~~~yDp~~~ 176 (458)
...+...+-||+.-..-.+++||+.+.
T Consensus 576 ~~~~~R~~~VyvgandGmLhaFd~~tG 602 (1036)
T COG3419 576 AQQANRAPVVYVGANDGMLHAFDANTG 602 (1036)
T ss_pred hhcCCccceEEEecCCceeeeccCCcc
Confidence 333445566777666667889998863
No 240
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=36.54 E-value=4e+02 Score=27.11 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=64.3
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE-EECCEEEEEEcCCCeE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA-VVNNELYAADYADMEV 373 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~~lyv~gg~~~~v 373 (458)
-.+|.|...||.+. ..-++|+.+..=..+-. ..... . ..+. .-||...+.|+.++.+
T Consensus 312 ~~DGSL~~tGGlD~-------~~RvWDlRtgr~im~L~---gH~k~-----------I-~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 312 QPDGSLAATGGLDS-------LGRVWDLRTGRCIMFLA---GHIKE-----------I-LSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred cCCCceeeccCccc-------hhheeecccCcEEEEec---ccccc-----------e-eeEeECCCceEEeecCCCCcE
Confidence 35899999999762 23457777765433211 11111 0 0122 2378888888888999
Q ss_pred EEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccC
Q 012701 374 RKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQ 445 (458)
Q Consensus 374 ~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p 445 (458)
.+||+....= +-.||....-.. ..-+-...|+.++.+++++ .+++|.. ..|..+..+.
T Consensus 370 kVWDLR~r~~--ly~ipAH~nlVS--~Vk~~p~~g~fL~TasyD~------t~kiWs~----~~~~~~ksLa 427 (459)
T KOG0272|consen 370 KVWDLRMRSE--LYTIPAHSNLVS--QVKYSPQEGYFLVTASYDN------TVKIWST----RTWSPLKSLA 427 (459)
T ss_pred EEeeeccccc--ceecccccchhh--heEecccCCeEEEEcccCc------ceeeecC----CCcccchhhc
Confidence 9999876542 434454332110 0111123567777777654 4566765 5677776553
No 241
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=36.26 E-value=2.4e+02 Score=27.20 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=43.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC--------CEEEEEcCCCCCcCccceEEEEEcCCC-ceeeCCCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG--------TELLVFGRELTAHHISHVIYRYSILTN-SWSSGMRM 236 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~--------~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~ 236 (458)
.++.+||..+++-.+.-.+|.......+...-++++ +.+|+.-- ....+.+||..++ .|+.+...
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~------~~~glIV~dl~~~~s~Rv~~~~ 107 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS------GGPGLIVYDLATGKSWRVLHNS 107 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET------TTCEEEEEETTTTEEEEEETCG
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC------CcCcEEEEEccCCcEEEEecCC
Confidence 478899999997644333333222111222224442 36777742 2237999999996 57776654
Q ss_pred CCCCceeeEEEeCCEEE
Q 012701 237 NAPRCLFGSASLGEIAI 253 (458)
Q Consensus 237 p~~r~~~~~~~~~~~ly 253 (458)
..+.-.+....+++..+
T Consensus 108 ~~~~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 108 FSPDPDAGPFTIGGESF 124 (287)
T ss_dssp CTTS-SSEEEEETTEEE
T ss_pred cceeccccceeccCceE
Confidence 44443344444555444
No 242
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.35 E-value=6e+02 Score=27.42 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=40.8
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC--------CCCC-CCCce-eeEEEe-CCEEEEEeccCCCCCccCe
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG--------MRMN-APRCL-FGSASL-GEIAILAGGSDLEGNILSS 267 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--------~~~p-~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~ 267 (458)
+-++.+++.||. ...|++||..+..=+.+ .+++ .++.. ++.+.- .+.++|.||+. ..
T Consensus 127 ak~~~lvaSgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte------k~ 194 (735)
T KOG0308|consen 127 AKNNELVASGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE------KD 194 (735)
T ss_pred ccCceeEEecCC------CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc------cc
Confidence 347788888885 35678888876533222 2233 23322 222222 34688888865 56
Q ss_pred EEEEeCCCCc
Q 012701 268 AEMYNSETQT 277 (458)
Q Consensus 268 v~~yd~~t~~ 277 (458)
+..||+.+++
T Consensus 195 lr~wDprt~~ 204 (735)
T KOG0308|consen 195 LRLWDPRTCK 204 (735)
T ss_pred eEEecccccc
Confidence 8899999884
No 243
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=35.26 E-value=4e+02 Score=25.29 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTE 345 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~ 345 (458)
..+..+|..|++=.+--..+.+... .-+..+|+|..+.- -.+|--+|+.+-.--+--.||.....+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtS-lEvs~dG~ilTia~--------gssV~Fwdaksf~~lKs~k~P~nV~SA----- 230 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTS-LEVSQDGRILTIAY--------GSSVKFWDAKSFGLLKSYKMPCNVESA----- 230 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCcc-eeeccCCCEEEEec--------CceeEEeccccccceeeccCccccccc-----
Confidence 5678888888864432222322221 12345777766631 123444555443222222355443322
Q ss_pred CCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEE-EEeCCEEEEEcCCC
Q 012701 346 MPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAF-RACGDRLIVIGGPK 417 (458)
Q Consensus 346 ~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~-~~~~~~lyv~GG~~ 417 (458)
...-+..+|+.||....+++||..++.= +........ +--+++ ..-++.+|..|-.+
T Consensus 231 ----------SL~P~k~~fVaGged~~~~kfDy~TgeE--i~~~nkgh~---gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 231 ----------SLHPKKEFFVAGGEDFKVYKFDYNTGEE--IGSYNKGHF---GPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred ----------cccCCCceEEecCcceEEEEEeccCCce--eeecccCCC---CceEEEEECCCCceeeccCCC
Confidence 2223568999999999999999988763 222211111 111222 24588999999653
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=35.24 E-value=3.1e+02 Score=27.50 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=67.0
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCcee-eCC
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWS-SGM 234 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~ 234 (458)
..++|+......+..+|+.+.+-. ...+..... ....+.-+++.++.+.+ ..+.+.++|..|.+=. .++
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v--~~i~~G~~~---~~i~~s~DG~~~~v~n~-----~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVV--ATIKVGGNP---RGIAVSPDGKYVYVANY-----EPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEE--EEEE-SSEE---EEEEE--TTTEEEEEEE-----ETTEEEEEETTT--EEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEE--EEEecCCCc---ceEEEcCCCCEEEEEec-----CCCceeEeccccccceeecc
Confidence 346777665667888999888632 222221110 11112234544444433 4567889998886532 222
Q ss_pred --CC----CCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEcccc
Q 012701 235 --RM----NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIG 307 (458)
Q Consensus 235 --~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~ 307 (458)
.+ +.+|...-.+...+..|++--.+ ...++..|.....=.....+...+.-|.+..- +++.|+++-..
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeeecccccccccccCcccceeeecccc
Confidence 12 22343222233355555553322 35677777665421111223344555555544 34444443221
Q ss_pred CCCCcccceEEEEECCCCc
Q 012701 308 GSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 308 ~~~~~~~~~v~~yd~~~~~ 326 (458)
.+.+-+.|.++++
T Consensus 193 ------sn~i~viD~~~~k 205 (369)
T PF02239_consen 193 ------SNKIAVIDTKTGK 205 (369)
T ss_dssp ------GTEEEEEETTTTE
T ss_pred ------cceeEEEeeccce
Confidence 2356666666654
No 245
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=34.22 E-value=1.4e+02 Score=25.20 Aligned_cols=69 Identities=13% Similarity=0.271 Sum_probs=40.7
Q ss_pred CEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE---eCCEEEEEcCCCCCCCCeeeEEEeecCCCCCC
Q 012701 361 NELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA---CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 437 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~---~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
..+.++| ....+..||..+|.=.--..+|..... +.+-. ....|.++||.. .+.-|+.+-...-
T Consensus 64 ~D~LliG-t~t~llaYDV~~N~d~Fyke~~DGvn~-----i~~g~~~~~~~~l~ivGGnc-------si~Gfd~~G~e~f 130 (136)
T PF14781_consen 64 RDCLLIG-TQTSLLAYDVENNSDLFYKEVPDGVNA-----IVIGKLGDIPSPLVIVGGNC-------SIQGFDYEGNEIF 130 (136)
T ss_pred cCEEEEe-ccceEEEEEcccCchhhhhhCccceeE-----EEEEecCCCCCcEEEECceE-------EEEEeCCCCcEEE
Confidence 3466665 667899999999873333344544321 11111 246788899842 3455666555556
Q ss_pred ceEee
Q 012701 438 WNLLA 442 (458)
Q Consensus 438 W~~l~ 442 (458)
|+..+
T Consensus 131 WtVtg 135 (136)
T PF14781_consen 131 WTVTG 135 (136)
T ss_pred EEecc
Confidence 77654
No 246
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=32.16 E-value=4.4e+02 Score=24.84 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=60.7
Q ss_pred eEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEEC----CCCceEEcCCCCCCCCCCCC
Q 012701 267 SAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDL----ETETWTEIPNMSPARGGAAR 342 (458)
Q Consensus 267 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~----~~~~W~~i~~~p~~r~~~~~ 342 (458)
.+.......+.|.+=|. ++ ++++|++.+.. ...+..|.. ....|.+.-.+|.+..+.
T Consensus 11 ~~~~~~~~~GsWmrDpl---~~--------~~r~~~~~~~~------~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gT-- 71 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPL---PA--------DDRIYVMNYFD------GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGT-- 71 (249)
T ss_pred EEEeeccccceeecCCC---cc--------cCceEEecccc------CceEEEeccHHHhhccCcceEEeCCCCcccc--
Confidence 34445555677865332 12 67888884443 234455544 345566666678777776
Q ss_pred CCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCC---ceEEecc
Q 012701 343 GTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERR---LWFTIGR 388 (458)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~---~W~~v~~ 388 (458)
..+|++|.+|.-......|.+||..+. .|..++.
T Consensus 72 ------------g~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~ 108 (249)
T KOG3545|consen 72 ------------GHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPY 108 (249)
T ss_pred ------------ceEEEcceEEeeccCCcceEEEEeecceeeeeeeccc
Confidence 789999999999888889999999884 3555543
No 247
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=31.83 E-value=5.4e+02 Score=25.79 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=78.2
Q ss_pred eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 248 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 248 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
.+.++|+..+. .+.+.++|..+++-.. ..+.++.-+..++ .++.+||..... ..+.+.+.|..++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~--~~~vG~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLG--SIPVGLGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceee--EeeeccCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCCC
Confidence 36789999653 4678899976665322 2222223333332 356899984321 3467889999988
Q ss_pred ceEEcCCCCCCC--CCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEecc----CCCccCCCCcc
Q 012701 326 TWTEIPNMSPAR--GGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGR----LPERANSMNGW 399 (458)
Q Consensus 326 ~W~~i~~~p~~r--~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~----lp~~~~~~~~~ 399 (458)
+=..-. |... .+. .+...++++|+.....+.+..+|..++.=.. +. .+..... +
T Consensus 151 ~~~~~~--~vG~~P~~~--------------a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P---~ 210 (381)
T COG3391 151 KVTATI--PVGNTPTGV--------------AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGP---A 210 (381)
T ss_pred eEEEEE--ecCCCcceE--------------EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCC---c
Confidence 754431 1111 221 2223356799998778899999988765332 21 2221111 2
Q ss_pred cEEEEEeCCEEEEEcCCC
Q 012701 400 GLAFRACGDRLIVIGGPK 417 (458)
Q Consensus 400 ~~a~~~~~~~lyv~GG~~ 417 (458)
+.++...+.++|+.-...
T Consensus 211 ~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 211 GIAVDPDGNRVYVANDGS 228 (381)
T ss_pred eEEECCCCCEEEEEeccC
Confidence 344545567788876543
No 248
>PRK10115 protease 2; Provisional
Probab=31.45 E-value=7.4e+02 Score=27.24 Aligned_cols=150 Identities=10% Similarity=0.021 Sum_probs=75.4
Q ss_pred ccceEEEEEcCCCce--eeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeC--CCCcEEEcCCCCCCCcc
Q 012701 216 ISHVIYRYSILTNSW--SSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNS--ETQTWKVLPSMKNPRKM 290 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~~~~~~p~~r~~ 290 (458)
....+|++++.|+.- ..+-.-+........... +++..++..... ..+.++.|+. .+..|..+-+.+.. ..
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 272 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLDAELADAEPFVFLPRRKD-HE 272 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEECcCCCCCceEEEECCCC-CE
Confidence 346799999998832 222111112222222222 333223433332 2356788873 34444333222222 12
Q ss_pred eeEEEECCEEEEEccccCCCCcccceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC
Q 012701 291 CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA 369 (458)
Q Consensus 291 ~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~ 369 (458)
+.....++.+|+.--.+. ....+...++. +.+|+.+-+......-. .+....+.|++..-.
T Consensus 273 ~~~~~~~~~ly~~tn~~~----~~~~l~~~~~~~~~~~~~l~~~~~~~~i~--------------~~~~~~~~l~~~~~~ 334 (686)
T PRK10115 273 YSLDHYQHRFYLRSNRHG----KNFGLYRTRVRDEQQWEELIPPRENIMLE--------------GFTLFTDWLVVEERQ 334 (686)
T ss_pred EEEEeCCCEEEEEEcCCC----CCceEEEecCCCcccCeEEECCCCCCEEE--------------EEEEECCEEEEEEEe
Confidence 233344688888753321 22336667776 57898876432221111 345567888777532
Q ss_pred --CCeEEEEeCCCCceEEec
Q 012701 370 --DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 370 --~~~v~~yd~~~~~W~~v~ 387 (458)
...++++|..++....+.
T Consensus 335 ~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 335 RGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCEEEEEEEcCCCCceEEec
Confidence 356888887666655553
No 249
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=5.1e+02 Score=25.21 Aligned_cols=209 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
|..+.+.. ..+.+..||..+.+-.+.-..+.--.....-.......+.+-...+ .++...++.+|+.-+
T Consensus 26 G~~litss-------~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d----~tIryLsl~dNkylR 94 (311)
T KOG1446|consen 26 GLLLITSS-------EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED----DTIRYLSLHDNKYLR 94 (311)
T ss_pred CCEEEEec-------CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC----CceEEEEeecCceEE
Q ss_pred cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 360 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (458)
.=+=...+-..-.+.-.+..|+-++.+ +++..||+...+-.-+-.++.....+ .--.
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D-------~tvrLWDlR~~~cqg~l~~~~~pi~A----------------fDp~ 151 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLD-------KTVRLWDLRVKKCQGLLNLSGRPIAA----------------FDPE 151 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccC-------CeEEeeEecCCCCceEEecCCCccee----------------ECCC
Q ss_pred CEEEEEEcCCCeEEEEeCCC----------------CceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 012701 361 NELYAADYADMEVRKYDKER----------------RLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFI 424 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~~~----------------~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~ 424 (458)
|-|++++-....|..||... .+|..+.=-|.... +-+..-++.+|++-++++.
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~------iLlsT~~s~~~~lDAf~G~----- 220 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS------ILLSTNASFIYLLDAFDGT----- 220 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE------EEEEeCCCcEEEEEccCCc-----
Q ss_pred eEEEeecCCCCCCceEeecc-CCCceeeeEE
Q 012701 425 ELNSWVPSEGPPQWNLLARK-QSANFVYNCA 454 (458)
Q Consensus 425 ~~~~~~~~~~~~~W~~l~~~-p~~~~~~~~~ 454 (458)
-...+.-......-..-+.. |...|+.+++
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcEEEEec
No 250
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=30.54 E-value=1.8e+02 Score=30.21 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=58.3
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC--CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
.-+++-+++||+ ...+-++|..+-+=+.-..++. +.++.-++..+.++....-.+ ..+.+||+...
T Consensus 474 ~pdgrtLivGGe------astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd------GnI~vwDLhnq 541 (705)
T KOG0639|consen 474 LPDGRTLIVGGE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD------GNIAVWDLHNQ 541 (705)
T ss_pred cCCCceEEeccc------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC------CcEEEEEcccc
Confidence 347788888886 2457778887766555555554 344444444455654432222 34788898876
Q ss_pred cEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 277 TWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
+- +..++..-.+.+... .+|.-...||.+ +++-+||+.+.
T Consensus 542 ~~--VrqfqGhtDGascIdis~dGtklWTGGlD-------ntvRcWDlreg 583 (705)
T KOG0639|consen 542 TL--VRQFQGHTDGASCIDISKDGTKLWTGGLD-------NTVRCWDLREG 583 (705)
T ss_pred ee--eecccCCCCCceeEEecCCCceeecCCCc-------cceeehhhhhh
Confidence 42 222332222333332 356556677765 45666666543
No 251
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.05 E-value=1.6e+02 Score=33.62 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred EEEcCCCCCCCcceeEEEE----CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 278 WKVLPSMKNPRKMCSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
|..+..|...-.+..+++- .|+||+.|+.. .|-++|..+.. .+.++|..-... ...
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r--------~IRIWDa~~E~--~~~diP~~s~t~----------vTa 1213 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR--------SIRIWDAHKEQ--VVADIPYGSSTL----------VTA 1213 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCCee--------EEEEEecccce--eEeecccCCCcc----------cee
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCC
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~ 379 (458)
-+.-..++.++++|..++.|..||..
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRR 1239 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecc
No 252
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=29.78 E-value=5.9e+02 Score=25.78 Aligned_cols=259 Identities=12% Similarity=-0.036 Sum_probs=0.0
Q ss_pred cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEE
Q 012701 142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIY 221 (458)
Q Consensus 142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 221 (458)
+.+|+-.+...+.. .++..|..+++-++|...+....+ +..+..-+..||.+- ....++
T Consensus 47 G~kllF~s~~dg~~-----------nly~lDL~t~~i~QLTdg~g~~~~---g~~~s~~~~~~~Yv~-------~~~~l~ 105 (386)
T PF14583_consen 47 GRKLLFASDFDGNR-----------NLYLLDLATGEITQLTDGPGDNTF---GGFLSPDDRALYYVK-------NGRSLR 105 (386)
T ss_dssp S-EEEEEE-TTSS------------EEEEEETTT-EEEE---SS-B-TT---T-EE-TTSSEEEEEE-------TTTEEE
T ss_pred CCEEEEEeccCCCc-----------ceEEEEcccCEEEECccCCCCCcc---ceEEecCCCeEEEEE-------CCCeEE
Q ss_pred EEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCC------------------ccCeEEEEeCCCCcEEEcCC
Q 012701 222 RYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGN------------------ILSSAEMYNSETQTWKVLPS 283 (458)
Q Consensus 222 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~------------------~~~~v~~yd~~t~~W~~~~~ 283 (458)
..|+.|.+=+.+-..|..-...+..+.+..--.+.|...... ....+...|+.+++.+.+-.
T Consensus 106 ~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 106 RVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp EEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred EEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Q ss_pred CCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCE
Q 012701 284 MKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNE 362 (458)
Q Consensus 284 ~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (458)
-..-.......-.+..+.++--.+ ....+-..||.-|.. ++.|..-..++....++ -.-+-+|.
T Consensus 186 ~~~wlgH~~fsP~dp~li~fCHEG-pw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH--------------Efw~~DG~ 250 (386)
T PF14583_consen 186 DTDWLGHVQFSPTDPTLIMFCHEG-PWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH--------------EFWVPDGS 250 (386)
T ss_dssp ESS-EEEEEEETTEEEEEEEEE-S--TTTSS-SEEEEETTS---EESS---TTEEEEE--------------EEE-TTSS
T ss_pred cCccccCcccCCCCCCEEEEeccC-CcceeceEEEEEEcCCCcceeeecCCCCccccc--------------ccccCCCC
Q ss_pred EEEE-----EcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCC--------eeeEEEe
Q 012701 363 LYAA-----DYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEG--------FIELNSW 429 (458)
Q Consensus 363 lyv~-----gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~--------~~~~~~~ 429 (458)
.+.+ |+...-|..||+++..=+.+..+|... +-....+++|+|-=|.+..... ......|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~-------H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS-------HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEE-------EEEE-TTSSEEEEEE-------------------EEE
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCCcee-------eeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Q ss_pred ecCCCCCCceEeec
Q 012701 430 VPSEGPPQWNLLAR 443 (458)
Q Consensus 430 ~~~~~~~~W~~l~~ 443 (458)
..+.....-..|+.
T Consensus 324 ~~~~~~~~~~~l~~ 337 (386)
T PF14583_consen 324 LFDVEAGRFRKLAR 337 (386)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EeccccCceeeeee
No 253
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=28.89 E-value=6e+02 Score=25.41 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=84.4
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe------CCEEEEEeccCCCCCccCeEEEE
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL------GEIAILAGGSDLEGNILSSAEMY 271 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~y 271 (458)
++..-.-|+|... ....|-+||...|+-.+- =++|-++++ --.+.+.||.+ ..+-++
T Consensus 200 avS~rHpYlFs~g-----edk~VKCwDLe~nkvIR~------YhGHlS~V~~L~lhPTldvl~t~grD------st~RvW 262 (460)
T KOG0285|consen 200 AVSKRHPYLFSAG-----EDKQVKCWDLEYNKVIRH------YHGHLSGVYCLDLHPTLDVLVTGGRD------STIRVW 262 (460)
T ss_pred eecccCceEEEec-----CCCeeEEEechhhhhHHH------hccccceeEEEeccccceeEEecCCc------ceEEEe
Confidence 4445556666432 345788999988864221 011222221 23566777765 456677
Q ss_pred eCCCCcEEEcCCCCCCCcceeEEE---ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCC
Q 012701 272 NSETQTWKVLPSMKNPRKMCSGVF---MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 348 (458)
Q Consensus 272 d~~t~~W~~~~~~p~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~ 348 (458)
|..|..=. --|...+...+.+. .|.+||-- .. -.+|--+|+..++=... -.-...+.
T Consensus 263 DiRtr~~V--~~l~GH~~~V~~V~~~~~dpqvit~-S~-------D~tvrlWDl~agkt~~t-lt~hkksv--------- 322 (460)
T KOG0285|consen 263 DIRTRASV--HVLSGHTNPVASVMCQPTDPQVITG-SH-------DSTVRLWDLRAGKTMIT-LTHHKKSV--------- 322 (460)
T ss_pred eecccceE--EEecCCCCcceeEEeecCCCceEEe-cC-------CceEEEeeeccCceeEe-eeccccee---------
Confidence 87776321 11222222222222 25666532 21 13455677765542111 01111111
Q ss_pred CcCCCCEEEEECCEEEEEE-cCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEE
Q 012701 349 SAEAPPLVAVVNNELYAAD-YADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELN 427 (458)
Q Consensus 349 ~~~~~~~~~~~~~~lyv~g-g~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~ 427 (458)
-+.+++-+.+.|. +..+.+..++...+.. +..+.. .++...++.+..+-+|+.||.+. .+.
T Consensus 323 ------ral~lhP~e~~fASas~dnik~w~~p~g~f--~~nlsg----h~~iintl~~nsD~v~~~G~dng------~~~ 384 (460)
T KOG0285|consen 323 ------RALCLHPKENLFASASPDNIKQWKLPEGEF--LQNLSG----HNAIINTLSVNSDGVLVSGGDNG------SIM 384 (460)
T ss_pred ------eEEecCCchhhhhccCCccceeccCCccch--hhcccc----ccceeeeeeeccCceEEEcCCce------EEE
Confidence 1233344445543 2335566665544442 112211 22233456667788999998542 345
Q ss_pred EeecC
Q 012701 428 SWVPS 432 (458)
Q Consensus 428 ~~~~~ 432 (458)
.|+..
T Consensus 385 fwdwk 389 (460)
T KOG0285|consen 385 FWDWK 389 (460)
T ss_pred EEecC
Confidence 56554
No 254
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=28.19 E-value=7.2e+02 Score=26.13 Aligned_cols=137 Identities=23% Similarity=0.298 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCC-CCCceeeEEEeCC--EEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMN-APRCLFGSASLGE--IAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p-~~r~~~~~~~~~~--~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
+.|+.+| ..+.+.+.+...+....-. .+. .|+ +.++..+ .+.|. ....+..+...+.
T Consensus 375 ~~~~t~g-------~Dd~l~~~~~~~~~~t~~~~~~lg~QP~---~lav~~d~~~avv~--------~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 375 GELFTIG-------WDDTLRVISLKDNGYTKSEVVKLGSQPK---GLAVLSDGGTAVVA--------CISDIVLLQDQTK 436 (603)
T ss_pred CcEEEEe-------cCCeEEEEecccCcccccceeecCCCce---eEEEcCCCCEEEEE--------ecCcEEEEecCCc
Confidence 6777777 5566777766555543322 222 222 3344333 44444 2244555554433
Q ss_pred cEEEcCCCCCCCcceeE--EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 277 TWKVLPSMKNPRKMCSG--VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~--~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
-- ..| .++..++ +.-++...++||.++ .+++|-+..+.-.+..-+...|...
T Consensus 437 ~~----~~~-~~y~~s~vAv~~~~~~vaVGG~Dg-------kvhvysl~g~~l~ee~~~~~h~a~i-------------- 490 (603)
T KOG0318|consen 437 VS----SIP-IGYESSAVAVSPDGSEVAVGGQDG-------KVHVYSLSGDELKEEAKLLEHRAAI-------------- 490 (603)
T ss_pred ce----eec-cccccceEEEcCCCCEEEEecccc-------eEEEEEecCCcccceeeeecccCCc--------------
Confidence 22 122 2333333 334788889999763 4788988776544333222222222
Q ss_pred EEEEE--CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 355 LVAVV--NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 355 ~~~~~--~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+.+.+ ++..++.|-....+..||.+++.
T Consensus 491 T~vaySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 491 TDVAYSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred eEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence 33333 56677777777899999988765
No 255
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=27.82 E-value=5.6e+02 Score=24.75 Aligned_cols=206 Identities=12% Similarity=0.116 Sum_probs=96.5
Q ss_pred EecCCCcEEeCCCCCCCccccccCceEEEeCC-EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC--CceeeEEE
Q 012701 171 FDPIRRRWMHLPRMTSNECFMCSDKESLAVGT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP--RCLFGSAS 247 (458)
Q Consensus 171 yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~ 247 (458)
=+-.-++|.++|.-..+.-+.. ++..++. .-|++|- ...++.-+---+.|+.+.+-..+ ...-...+
T Consensus 110 T~DgGqsWARi~~~e~~eg~~~---sI~f~d~q~g~m~gd-------~Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s 179 (339)
T COG4447 110 TTDGGQSWARIPLSEKLEGFPD---SITFLDDQRGEMLGD-------QGAILKTTDGGKNWKALVEKAVGLAVPNEIARS 179 (339)
T ss_pred ecCCCcchhhchhhcCCCCCcc---eeEEecchhhhhhcc-------cceEEEecCCcccHhHhcccccchhhhhhhhhh
Confidence 3444568988875444333222 2344443 4455552 23455544455679877543222 11112223
Q ss_pred eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC--EEEEEccccCCCCcccceEEEEECCCC
Q 012701 248 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG--KFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 248 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
.++...++|-... -.-..+.-...|..-..-...|.......-++ -+++.||.. ........-+
T Consensus 180 ~dng~vaVg~rGs------~f~T~~aGqt~~~~~g~~s~~~letmg~adag~~g~la~g~qg--------~~f~~~~~gD 245 (339)
T COG4447 180 ADNGYVAVGARGS------FFSTWGAGQTVWLPHGRNSSRRLETMGLADAGSKGLLARGGQG--------DQFSWVCGGD 245 (339)
T ss_pred ccCCeEEEecCcc------eEecCCCCccEEeccCCCccchhcccccccCCccceEEEcccc--------ceeecCCCcc
Confidence 3444444433211 11112333333432221111121212223344 356666653 1233455677
Q ss_pred ceEEcCCC-CCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE
Q 012701 326 TWTEIPNM-SPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR 404 (458)
Q Consensus 326 ~W~~i~~~-p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~ 404 (458)
.|..+... -..|... +..-..-.-.+++|+.|. .+.+..--....+|.+....++....+ ++ ...
T Consensus 246 ~wsd~~~~~~~g~~~~----------Gl~d~a~~a~~~v~v~G~-gGnvl~StdgG~t~skd~g~~er~s~l--~~-V~~ 311 (339)
T COG4447 246 EWSDQGEPVNLGRRSW----------GLLDFAPRAPPEVWVSGI-GGNVLASTDGGTTWSKDGGVEERVSNL--YS-VVF 311 (339)
T ss_pred cccccccchhcccCCC----------ccccccccCCCCeEEecc-CccEEEecCCCeeEeccCChhhhhhhh--he-EEe
Confidence 88877531 1111111 111123445778888875 445555555677899887777655432 22 233
Q ss_pred EeCCEEEEEc
Q 012701 405 ACGDRLIVIG 414 (458)
Q Consensus 405 ~~~~~lyv~G 414 (458)
.-.++.+++|
T Consensus 312 ts~~~~~l~G 321 (339)
T COG4447 312 TSPKAGFLCG 321 (339)
T ss_pred ccCCceEEEc
Confidence 4567888888
No 256
>KOG4328 consensus WD40 protein [Function unknown]
Probab=27.51 E-value=4e+02 Score=27.38 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=13.0
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+..++++|-+ ...+.+||...++
T Consensus 431 ~~~li~vg~~------~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 431 DYNLIVVGRY------PRPIDVFDGNGGQ 453 (498)
T ss_pred CccEEEEecc------CcceeEEcCCCCE
Confidence 3445555443 3447777776665
No 257
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=27.30 E-value=4e+02 Score=26.07 Aligned_cols=97 Identities=18% Similarity=0.213 Sum_probs=52.5
Q ss_pred cCeEEEEeCCCCcEEEcCCCCCCCcceeEE------EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCC
Q 012701 265 LSSAEMYNSETQTWKVLPSMKNPRKMCSGV------FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARG 338 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~ 338 (458)
...+..||.+|-+--.-.. | -..|..+ .-.++|||.|..+| .|-.||-.+++-. ..+-....
T Consensus 237 Hp~~rlYdv~T~Qcfvsan-P--d~qht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv--~t~~~AH~ 304 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSAN-P--DDQHTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCV--RTIGNAHG 304 (430)
T ss_pred CCceeEEeccceeEeeecC-c--ccccccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHH--HHHHhhcC
Confidence 3568889988765322222 2 2223222 12689999988763 3556666555421 12222222
Q ss_pred CCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 339 GAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
+. +.+.++..-|++..+-.|.++.+..|.+.++.=
T Consensus 305 gs----------evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 305 GS----------EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred Cc----------eeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 22 112233334667666667777788888777653
No 258
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=26.68 E-value=7.2e+02 Score=25.59 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=12.4
Q ss_pred eEEEEEcCCCceeeCCC
Q 012701 219 VIYRYSILTNSWSSGMR 235 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~ 235 (458)
..|+||..+++-+..+.
T Consensus 110 ~gYrYdgat~~l~~~~~ 126 (469)
T PF11134_consen 110 KGYRYDGATKTLSNWPT 126 (469)
T ss_pred ceEEEechhhHhhcCCC
Confidence 57999999986555443
No 259
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=26.62 E-value=73 Score=31.34 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCCCCChhHHHHhhcccC--------cccchhhhhccHhHHHHhcc
Q 012701 104 SLIQPIGRDNSISCLIRCS--------RSDYGSIASLNQSFRSLIRS 142 (458)
Q Consensus 104 ~l~~~LP~dl~~~iL~rlp--------~~~~~~l~~Vck~wr~lv~s 142 (458)
..|..||.+++..|+-++. +......+.||+.||.....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 7899999999999998876 44677889999999976543
No 260
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=25.82 E-value=8.1e+02 Score=25.91 Aligned_cols=227 Identities=18% Similarity=0.156 Sum_probs=112.8
Q ss_pred EEEeCCEEEEEcCCCC------------------CcCccceEEEEEcCCCc-eeeCCCCCCCCceeeEEEeCCEEEEEec
Q 012701 197 SLAVGTELLVFGRELT------------------AHHISHVIYRYSILTNS-WSSGMRMNAPRCLFGSASLGEIAILAGG 257 (458)
Q Consensus 197 ~~~~~~~lyv~GG~~~------------------~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG 257 (458)
+...+++|.|+|.... .......+.+||+...+ =+.+......-...++-.+++.+|++-.
T Consensus 59 Lyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~ 138 (521)
T PF09826_consen 59 LYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTN 138 (521)
T ss_pred eEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEe
Confidence 4667889999984321 01234567889886432 1111112222234566677999999954
Q ss_pred cCCCCCccCeEEEEe-CCCCcEEEcCCCCCCCcc---eeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC
Q 012701 258 SDLEGNILSSAEMYN-SETQTWKVLPSMKNPRKM---CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM 333 (458)
Q Consensus 258 ~~~~~~~~~~v~~yd-~~t~~W~~~~~~p~~r~~---~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~ 333 (458)
.... ....+ .....| +|.-+.. .........+|+-++.. ......|-.+|+.+++=.....+
T Consensus 139 ~~~~------~~~~~~~~~~~~-----~P~~~~~~~~~~~~~~~~~~y~p~~~~---~~~~~~i~s~dl~~~~~~~~~~~ 204 (521)
T PF09826_consen 139 SYPN------YYAIEEADLEDI-----LPSYRDNGEEATVIVPCDIIYFPGGPS---GSNYTTITSIDLDPDKASDSTSV 204 (521)
T ss_pred cCCc------cchhhccccccc-----CceEEecCcceeeecccceEEecCCCC---CCcEEEEEEEeCCCCCccceeEE
Confidence 3211 11000 011111 1211111 12233445566655333 12234677788854432111111
Q ss_pred CCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEc----------------------CCCeEEEEeCCCCceEEec--cC
Q 012701 334 SPARGGAARGTEMPASAEAPPLVAVVNNELYAADY----------------------ADMEVRKYDKERRLWFTIG--RL 389 (458)
Q Consensus 334 p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg----------------------~~~~v~~yd~~~~~W~~v~--~l 389 (458)
.. .+ ..+-+..+.||+... ....|.+|++.....+-++ ..
T Consensus 205 ~g--~~--------------~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~~sg~V 268 (521)
T PF09826_consen 205 LG--SG--------------GNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIEYVGSGSV 268 (521)
T ss_pred Ee--cC--------------CEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEEEEEEEEE
Confidence 10 11 145666778888742 1146888998888777554 33
Q ss_pred CCccCCCCcccEEEEEeCCEEEEEcCCCC---CCCCeeeEEEeecCCCCCCceEeeccCCCceeeeEEEee
Q 012701 390 PERANSMNGWGLAFRACGDRLIVIGGPKA---SGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 390 p~~~~~~~~~~~a~~~~~~~lyv~GG~~~---~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
|.... + .+++--++|.|-|+--... ........++|.++..-..=-.|..+-.+--.|++.-||
T Consensus 269 ~G~ll--n--qFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~gE~IysvRF~G 335 (521)
T PF09826_consen 269 PGYLL--N--QFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPGERIYSVRFMG 335 (521)
T ss_pred CcEEc--c--cccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCCceEEEEEEeC
Confidence 33221 1 2567778888877654321 223344556677754333333444444566667776665
No 261
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=25.67 E-value=9.7e+02 Score=26.76 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=37.8
Q ss_pred EEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 363 LYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 363 lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
+.++|-.++.|.+||+..++=-.-=.-+..+. -..++..-|.-+.+.|+..+ .+..|+.+.....|...
T Consensus 216 VVaiG~~~G~ViifNlK~dkil~sFk~d~g~V----tslSFrtDG~p~las~~~~G------~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLKFDKILMSFKQDWGRV----TSLSFRTDGNPLLASGRSNG------DMAFWDLEKKKLINVTR 284 (910)
T ss_pred EEEEeccCceEEEEEcccCcEEEEEEccccce----eEEEeccCCCeeEEeccCCc------eEEEEEcCCCeeeeeee
Confidence 45566666777777776654211100111111 02445555667777776432 46788888777777554
No 262
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=25.52 E-value=6.5e+02 Score=24.68 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=72.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC------CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP------RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~------r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
-+.+-++||...+....+.+.+||-..++=..-..+..+ |..+-++++.++|||+-=.+. +..+..+|..
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n----~k~l~~~et~ 133 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN----PKLLHVIETR 133 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC----hhheeeeecc
Confidence 356666777765666788999999544332111111111 334555666677766622111 2223333332
Q ss_pred CCcEEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC-CCCCCCCCCCCCCCCCCcCC
Q 012701 275 TQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 275 t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~~~~~~~~ 352 (458)
. .|..-|+.+ ..+..+.++-|.. ...+.+-|+...+-. ++ .-.+.-..
T Consensus 134 ~----------NPkGlC~~~~~~~k~~LafPg~k------~GqvQi~dL~~~~~~--~p~~I~AH~s~------------ 183 (346)
T KOG2111|consen 134 S----------NPKGLCSLCPTSNKSLLAFPGFK------TGQVQIVDLASTKPN--APSIINAHDSD------------ 183 (346)
T ss_pred c----------CCCceEeecCCCCceEEEcCCCc------cceEEEEEhhhcCcC--CceEEEcccCc------------
Confidence 2 233334443 3355677777754 245677777654431 11 00011110
Q ss_pred CCEEEEE--CCEEEEEEcCCC-eEEEEeCCCCc
Q 012701 353 PPLVAVV--NNELYAADYADM-EVRKYDKERRL 382 (458)
Q Consensus 353 ~~~~~~~--~~~lyv~gg~~~-~v~~yd~~~~~ 382 (458)
-+++.+ .|.+.+.+...+ -|.+||..+++
T Consensus 184 -Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 184 -IACVALNLQGTLVATASTKGTLIRIFDTEDGT 215 (346)
T ss_pred -eeEEEEcCCccEEEEeccCcEEEEEEEcCCCc
Confidence 022222 566666655444 46778988876
No 263
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=25.08 E-value=6.2e+02 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=17.6
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcCCC
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSILTN 228 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 228 (458)
+.+..+++.-|+ ....|..||..+.
T Consensus 161 ~c~s~~lllaGy-----Esghvv~wd~S~~ 185 (323)
T KOG0322|consen 161 ACGSTFLLLAGY-----ESGHVVIWDLSTG 185 (323)
T ss_pred cccceEEEEEec-----cCCeEEEEEccCC
Confidence 445667777776 4556888998886
No 264
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=24.27 E-value=2.1e+02 Score=32.05 Aligned_cols=125 Identities=22% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEE
Q 012701 286 NPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYA 365 (458)
Q Consensus 286 ~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv 365 (458)
..+.+++...++..-.+.||.. ..+..||+.+.+=++......+ +. .+.-.||+...
T Consensus 135 s~~~M~~~~~~~~~~~i~Gg~Q-------~~li~~Dl~~~~e~r~~~v~a~--~v--------------~imR~Nnr~lf 191 (1118)
T KOG1275|consen 135 SMTKMASSLHMGPSTLIMGGLQ-------EKLIHIDLNTEKETRTTNVSAS--GV--------------TIMRYNNRNLF 191 (1118)
T ss_pred CHHHHHHHhccCCcceeecchh-------hheeeeecccceeeeeeeccCC--ce--------------EEEEecCcEEE
Confidence 3455666667788888999875 3467788887765555433221 23 56777899999
Q ss_pred EEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCC--eeeEEEeecCCCCCCceEeec
Q 012701 366 ADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEG--FIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 366 ~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~--~~~~~~~~~~~~~~~W~~l~~ 443 (458)
.|-..+.|..-|+.+.+ .+..+.....+ -..+.+.||.|+-+|=....+.. ..-+.+|+. +.-+.|++
T Consensus 192 ~G~t~G~V~LrD~~s~~--~iht~~aHs~s----iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDL----Rmmral~P 261 (1118)
T KOG1275|consen 192 CGDTRGTVFLRDPNSFE--TIHTFDAHSGS----ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDL----RMMRALSP 261 (1118)
T ss_pred eecccceEEeecCCcCc--eeeeeeccccc----eeeeeccCCeEEEeecccccccccccchhhhhhh----hhhhccCC
Confidence 99888899998886654 33333222211 13455556666655532222221 133456665 44444544
No 265
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=23.26 E-value=7.2e+02 Score=24.44 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
-|.++.+|- ....+.+||..|.. ++.|..+.....+... +++..+....+ ..+-.+|...++
T Consensus 34 ~G~~lAvGc------~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D------~si~lwDl~~gs 98 (405)
T KOG1273|consen 34 WGDYLAVGC------ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRD------WSIKLWDLLKGS 98 (405)
T ss_pred Ccceeeeec------cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCC------ceeEEEeccCCC
Confidence 345555552 34568899998865 4555444443322222 45544543322 567777777765
No 266
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=22.95 E-value=6.8e+02 Score=24.02 Aligned_cols=174 Identities=16% Similarity=0.160 Sum_probs=82.1
Q ss_pred ccceEEEEEcCCCceeeCCCCCCC--CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC-----CCCCC
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS-----MKNPR 288 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-----~p~~r 288 (458)
..+++..+|..|++=...-..+.+ |..| ..++.++++-- +........+.+||.....=..... +|.+-
T Consensus 72 AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F---~~~gn~~l~~t-D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ 147 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLATWKTNSPVKRVDF---SFGGNLILAST-DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD 147 (327)
T ss_pred ccceeEEEEcCCCcEEEEeecCCeeEEEee---ccCCcEEEEEe-hhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence 556678889888764333223322 2222 22444444422 2112245778888887543222211 12222
Q ss_pred cceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEE
Q 012701 289 KMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYA 365 (458)
Q Consensus 289 ~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv 365 (458)
.....+.. -++..|.|+.++ .|-.||..++.= ..-...-...... .-..-+...++
T Consensus 148 skit~a~Wg~l~~~ii~Ghe~G-------~is~~da~~g~~~v~s~~~h~~~Ind--------------~q~s~d~T~Fi 206 (327)
T KOG0643|consen 148 SKITSALWGPLGETIIAGHEDG-------SISIYDARTGKELVDSDEEHSSKIND--------------LQFSRDRTYFI 206 (327)
T ss_pred cceeeeeecccCCEEEEecCCC-------cEEEEEcccCceeeechhhhcccccc--------------ccccCCcceEE
Confidence 33333333 356666666542 467788887532 1111110000000 11122445566
Q ss_pred EEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCC
Q 012701 366 ADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKAS 419 (458)
Q Consensus 366 ~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~ 419 (458)
.|..+.....+|..+-+-.+--.-..|.. ..++....+.+++-||.+..
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~te~PvN-----~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYTTERPVN-----TAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred ecccCccceeeeccceeeEEEeeeccccc-----ceecccccceEEecCCceee
Confidence 66555666667766543322111111221 14555678899998987644
No 267
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=22.77 E-value=7.3e+02 Score=24.33 Aligned_cols=107 Identities=13% Similarity=0.231 Sum_probs=61.1
Q ss_pred cCeEEEEeCCCCcEEEc--------CCCCCCCcceeEEEECCEEEEEccccCC------CCcccceEEEEECCCCceEEc
Q 012701 265 LSSAEMYNSETQTWKVL--------PSMKNPRKMCSGVFMDGKFYVIGGIGGS------DSKVLTCGEEYDLETETWTEI 330 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~~--------~~~p~~r~~~~~~~~~g~lyv~GG~~~~------~~~~~~~v~~yd~~~~~W~~i 330 (458)
...+.+||.. |+++ |.+|..-.-+-...++++|||.=-.... ...-+.-|.+||+.-+--+++
T Consensus 161 ~g~IDVFd~~---f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~ 237 (336)
T TIGR03118 161 QGRIDVFKGS---FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRV 237 (336)
T ss_pred CCceEEecCc---cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEe
Confidence 3567888654 4432 2244443444567899999997432211 112234578899987766655
Q ss_pred CC---CCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 331 PN---MSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 331 ~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
.+ +-.|+.-. .+|...-...+.|.|--.-++.|-.||+.+.+|.
T Consensus 238 as~g~LNaPWG~a----------~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 238 ASSGRLNAPWGLA----------IAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred ccCCcccCCceee----------eChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 42 22222211 1111223356677775545789999999988875
No 268
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.49 E-value=9.9e+02 Score=25.36 Aligned_cols=67 Identities=19% Similarity=0.275 Sum_probs=41.1
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEEe--ccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFTI--GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQ 437 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~v--~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~ 437 (458)
+...+++|-.++.|..||..++.=+.+ +-+|. +..--.+|.++++|+..+ ++.+||...++-.
T Consensus 270 ~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~---------~iaWHp~gai~~V~s~qG------elQ~FD~ALspi~ 334 (545)
T PF11768_consen 270 SEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT---------LIAWHPDGAIFVVGSEQG------ELQCFDMALSPIK 334 (545)
T ss_pred ccceEEEEecCCeEEEEEcCCCeeeeeeecccce---------EEEEcCCCcEEEEEcCCc------eEEEEEeecCccc
Confidence 567889998999999999887743332 21121 112223778888887542 5666665554444
Q ss_pred ceEe
Q 012701 438 WNLL 441 (458)
Q Consensus 438 W~~l 441 (458)
-+.+
T Consensus 335 ~qLl 338 (545)
T PF11768_consen 335 MQLL 338 (545)
T ss_pred eeec
Confidence 4444
Done!