Query 012701
Match_columns 458
No_of_seqs 355 out of 2822
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 14:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012701.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012701hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xn4_A Kelch-like protein 2; s 100.0 1.1E-43 3.8E-48 345.1 35.2 280 141-457 14-299 (302)
2 1zgk_A Kelch-like ECH-associat 100.0 8.3E-44 2.8E-48 347.4 34.3 282 137-456 19-308 (308)
3 3ii7_A Kelch-like protein 7; p 100.0 3E-43 1E-47 342.6 33.7 276 142-456 11-293 (306)
4 2vpj_A Kelch-like protein 12; 100.0 2.5E-42 8.6E-47 335.2 34.8 280 140-457 12-300 (301)
5 4asc_A Kelch repeat and BTB do 100.0 9E-41 3.1E-45 326.8 29.4 263 166-457 13-297 (315)
6 2woz_A Kelch repeat and BTB do 100.0 1.9E-40 6.3E-45 325.0 28.4 272 142-457 15-307 (318)
7 2uvk_A YJHT; unknown function, 100.0 1.6E-38 5.3E-43 316.1 27.5 268 140-445 17-352 (357)
8 1zgk_A Kelch-like ECH-associat 100.0 4E-37 1.4E-41 300.0 27.6 236 196-457 19-262 (308)
9 4asc_A Kelch repeat and BTB do 100.0 1.8E-37 6.3E-42 303.2 25.1 244 140-416 43-306 (315)
10 2xn4_A Kelch-like protein 2; s 100.0 9.6E-37 3.3E-41 296.1 27.8 237 140-410 59-302 (302)
11 2uvk_A YJHT; unknown function, 100.0 1.7E-36 5.8E-41 301.3 28.2 250 180-457 2-316 (357)
12 3ii7_A Kelch-like protein 7; p 100.0 2.2E-36 7.5E-41 294.1 28.2 228 201-457 11-247 (306)
13 2woz_A Kelch repeat and BTB do 100.0 7.2E-37 2.5E-41 299.4 24.7 247 140-415 54-315 (318)
14 2vpj_A Kelch-like protein 12; 100.0 9.5E-36 3.3E-40 288.8 28.6 235 198-457 11-253 (301)
15 2zwa_A Leucine carboxyl methyl 100.0 4.5E-33 1.5E-37 300.2 22.8 245 141-417 396-675 (695)
16 2zwa_A Leucine carboxyl methyl 100.0 4.6E-32 1.6E-36 292.3 25.1 246 177-456 378-663 (695)
17 1k3i_A Galactose oxidase precu 100.0 1E-31 3.5E-36 288.4 17.9 285 142-456 197-518 (656)
18 1k3i_A Galactose oxidase precu 100.0 2E-29 6.8E-34 270.7 17.7 268 155-456 158-464 (656)
19 2ovr_B FBW7, F-BOX/WD repeat p 99.0 2.5E-07 8.7E-12 93.3 28.3 274 102-433 15-348 (445)
20 3v7d_B Cell division control p 98.8 8.7E-07 3E-11 89.6 25.7 39 104-142 13-51 (464)
21 1p22_A F-BOX/WD-repeat protein 98.8 2.5E-07 8.4E-12 93.2 20.1 273 104-432 9-364 (435)
22 1fs1_A SKP2 F-BOX, cyclin A/CD 98.5 6E-08 2.1E-12 67.5 2.7 45 103-147 6-50 (53)
23 3dsm_A Uncharacterized protein 98.4 0.00015 5.1E-09 70.1 25.7 211 165-415 16-244 (328)
24 3mbr_X Glutamine cyclotransfer 98.3 3.4E-05 1.2E-09 71.1 18.9 185 196-415 25-223 (243)
25 3dsm_A Uncharacterized protein 98.1 0.00055 1.9E-08 66.0 23.2 232 166-439 64-307 (328)
26 3nol_A Glutamine cyclotransfer 98.1 0.00014 4.9E-09 67.6 16.8 186 197-415 48-244 (262)
27 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0047 1.6E-07 60.2 28.3 227 166-441 63-304 (376)
28 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0051 1.7E-07 59.9 27.8 220 158-440 105-344 (376)
29 3nok_A Glutaminyl cyclase; bet 98.0 0.00024 8.3E-09 66.1 16.0 182 196-415 59-254 (268)
30 2e31_A FBS1, F-box only protei 97.8 3.5E-06 1.2E-10 79.8 1.4 46 103-148 48-94 (297)
31 3mbr_X Glutamine cyclotransfer 97.8 0.00065 2.2E-08 62.6 16.3 119 237-383 16-136 (243)
32 1ri6_A Putative isomerase YBHE 97.8 0.0023 8E-08 60.7 20.2 217 201-455 95-330 (343)
33 3vgz_A Uncharacterized protein 97.7 0.025 8.6E-07 53.7 27.3 219 165-432 68-302 (353)
34 2iwa_A Glutamine cyclotransfer 97.7 0.0037 1.3E-07 58.5 19.3 182 202-416 32-226 (266)
35 1q7f_A NHL, brain tumor CG1071 97.7 0.034 1.2E-06 51.5 27.4 221 167-433 52-280 (286)
36 1rwi_B Serine/threonine-protei 97.6 0.012 4E-07 54.0 21.2 214 166-433 46-264 (270)
37 1l0q_A Surface layer protein; 97.5 0.0026 9E-08 61.9 16.3 175 166-386 12-195 (391)
38 3nol_A Glutamine cyclotransfer 97.5 0.0013 4.3E-08 61.2 12.9 112 244-383 47-158 (262)
39 3jrp_A Fusion protein of prote 97.5 0.0041 1.4E-07 59.8 17.3 200 202-444 69-297 (379)
40 3hfq_A Uncharacterized protein 97.4 0.0048 1.6E-07 59.2 16.3 189 167-387 19-227 (347)
41 1l0q_A Surface layer protein; 97.4 0.003 1E-07 61.5 15.0 182 202-433 2-189 (391)
42 2ovr_B FBW7, F-BOX/WD repeat p 97.3 0.04 1.4E-06 54.7 23.0 196 198-433 245-442 (445)
43 3bws_A Protein LP49; two-domai 97.3 0.015 5E-07 57.4 19.1 217 167-433 102-334 (433)
44 1p22_A F-BOX/WD-repeat protein 97.2 0.0093 3.2E-07 59.3 17.2 231 165-449 192-430 (435)
45 4ery_A WD repeat-containing pr 97.2 0.057 2E-06 50.6 21.8 186 201-433 76-268 (312)
46 3jrp_A Fusion protein of prote 97.2 0.017 5.9E-07 55.2 18.4 193 201-435 22-242 (379)
47 3vgz_A Uncharacterized protein 97.2 0.044 1.5E-06 52.0 21.0 154 201-384 52-219 (353)
48 1npe_A Nidogen, entactin; glyc 97.2 0.13 4.5E-06 47.2 24.6 173 201-415 47-226 (267)
49 3bws_A Protein LP49; two-domai 97.2 0.031 1.1E-06 55.0 20.2 185 167-383 145-337 (433)
50 1ijq_A LDL receptor, low-densi 97.2 0.13 4.4E-06 48.9 23.8 207 157-414 2-225 (316)
51 1rwi_B Serine/threonine-protei 97.1 0.047 1.6E-06 49.8 19.8 148 201-385 34-185 (270)
52 1gxr_A ESG1, transducin-like e 97.1 0.014 4.8E-07 54.9 16.1 184 201-434 108-297 (337)
53 3scy_A Hypothetical bacterial 97.1 0.037 1.3E-06 53.2 19.4 78 360-443 221-301 (361)
54 1k8k_C P40, ARP2/3 complex 41 97.1 0.034 1.2E-06 53.2 19.0 232 165-444 29-285 (372)
55 1ri6_A Putative isomerase YBHE 97.1 0.087 3E-06 49.5 21.4 206 201-444 49-273 (343)
56 1gxr_A ESG1, transducin-like e 97.1 0.024 8.2E-07 53.2 17.3 178 165-384 118-300 (337)
57 4g56_B MGC81050 protein; prote 97.1 0.0078 2.7E-07 58.4 14.0 192 201-440 150-350 (357)
58 2z2n_A Virginiamycin B lyase; 97.0 0.13 4.4E-06 47.3 21.6 172 201-415 109-284 (299)
59 3nok_A Glutaminyl cyclase; bet 97.0 0.01 3.5E-07 55.1 13.3 110 243-383 58-167 (268)
60 2iwa_A Glutamine cyclotransfer 97.0 0.013 4.5E-07 54.7 14.2 112 243-382 24-137 (266)
61 3v64_C Agrin; beta propeller, 96.9 0.32 1.1E-05 46.9 24.1 207 156-415 44-263 (349)
62 2qc5_A Streptogramin B lactona 96.9 0.17 5.9E-06 46.5 21.5 200 166-414 41-247 (300)
63 4gqb_B Methylosome protein 50; 96.9 0.021 7.3E-07 55.1 15.4 184 201-433 138-331 (344)
64 3v65_B Low-density lipoprotein 96.9 0.15 5E-06 50.2 21.7 206 156-414 87-305 (386)
65 1q7f_A NHL, brain tumor CG1071 96.9 0.27 9.2E-06 45.2 22.7 177 201-415 40-225 (286)
66 1k8k_C P40, ARP2/3 complex 41 96.8 0.1 3.5E-06 49.7 19.7 70 297-389 213-285 (372)
67 3v7d_B Cell division control p 96.8 0.5 1.7E-05 46.7 26.2 173 201-416 279-452 (464)
68 2pm7_B Protein transport prote 96.7 0.15 5E-06 47.7 19.7 200 202-444 67-295 (297)
69 3g4e_A Regucalcin; six bladed 96.7 0.056 1.9E-06 50.7 16.7 211 164-417 33-263 (297)
70 2z2n_A Virginiamycin B lyase; 96.7 0.34 1.2E-05 44.4 25.9 200 166-414 36-242 (299)
71 3bg1_A Protein SEC13 homolog; 96.7 0.048 1.6E-06 51.6 16.3 200 202-447 71-306 (316)
72 3no2_A Uncharacterized protein 96.7 0.095 3.3E-06 48.9 18.1 189 201-441 4-203 (276)
73 3ow8_A WD repeat-containing pr 96.7 0.11 3.8E-06 49.3 18.9 182 201-431 133-319 (321)
74 2p4o_A Hypothetical protein; p 96.7 0.32 1.1E-05 45.7 22.0 204 165-415 52-277 (306)
75 3p5b_L Low density lipoprotein 96.7 0.47 1.6E-05 46.8 23.6 210 156-414 83-307 (400)
76 3mkq_A Coatomer beta'-subunit; 96.7 0.069 2.4E-06 57.3 18.8 186 157-382 26-219 (814)
77 3vl1_A 26S proteasome regulato 96.6 0.54 1.9E-05 45.6 24.1 215 165-433 118-365 (420)
78 3jro_A Fusion protein of prote 96.6 0.043 1.5E-06 59.0 17.0 200 202-443 67-294 (753)
79 2pm7_B Protein transport prote 96.6 0.18 6.3E-06 46.9 19.5 203 201-439 20-244 (297)
80 1r5m_A SIR4-interacting protei 96.6 0.073 2.5E-06 51.6 17.3 135 216-382 225-363 (425)
81 2qc5_A Streptogramin B lactona 96.6 0.4 1.4E-05 43.9 21.6 171 201-414 30-205 (300)
82 2aq5_A Coronin-1A; WD40 repeat 96.6 0.094 3.2E-06 51.2 17.8 193 201-435 93-301 (402)
83 1pjx_A Dfpase, DIISOPROPYLFLUO 96.6 0.05 1.7E-06 50.8 15.1 185 166-383 46-259 (314)
84 3jro_A Fusion protein of prote 96.5 0.037 1.3E-06 59.5 15.5 191 202-434 21-239 (753)
85 3hfq_A Uncharacterized protein 96.5 0.031 1.1E-06 53.4 13.4 153 219-387 19-179 (347)
86 3vl1_A 26S proteasome regulato 96.5 0.28 9.6E-06 47.6 20.8 201 201-434 108-323 (420)
87 1got_B GT-beta; complex (GTP-b 96.5 0.24 8.3E-06 47.1 19.7 137 217-382 163-303 (340)
88 3u4y_A Uncharacterized protein 96.5 0.069 2.4E-06 50.3 15.6 180 219-433 109-304 (331)
89 1kb0_A Quinohemoprotein alcoho 96.4 1.2 4.1E-05 47.2 32.7 208 158-382 79-348 (677)
90 4ery_A WD repeat-containing pr 96.4 0.086 2.9E-06 49.3 15.9 134 218-383 45-183 (312)
91 3fm0_A Protein CIAO1; WDR39,SG 96.4 0.04 1.4E-06 52.9 13.7 158 201-390 27-191 (345)
92 3scy_A Hypothetical bacterial 96.4 0.4 1.4E-05 45.7 20.9 117 297-442 221-346 (361)
93 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.48 1.6E-05 46.9 22.1 211 201-439 160-397 (450)
94 3v9f_A Two-component system se 96.4 0.13 4.5E-06 55.4 18.9 178 166-387 427-618 (781)
95 3m0c_C LDL receptor, low-densi 96.4 0.42 1.4E-05 51.6 22.5 209 156-415 395-620 (791)
96 2ojh_A Uncharacterized protein 96.4 0.24 8.3E-06 44.9 18.3 185 166-388 22-214 (297)
97 3dwl_C Actin-related protein 2 96.3 0.031 1.1E-06 53.8 12.4 151 201-382 22-179 (377)
98 3v9f_A Two-component system se 96.3 0.81 2.8E-05 49.1 24.7 204 166-414 383-600 (781)
99 3ow8_A WD repeat-containing pr 96.3 0.25 8.5E-06 46.8 18.4 182 202-433 92-279 (321)
100 1nir_A Nitrite reductase; hemo 96.3 0.24 8.2E-06 51.0 19.4 235 158-445 150-417 (543)
101 4aez_A CDC20, WD repeat-contai 96.3 0.41 1.4E-05 46.6 20.4 177 217-433 112-293 (401)
102 4aez_A CDC20, WD repeat-contai 96.3 0.41 1.4E-05 46.6 20.3 227 163-440 153-387 (401)
103 1r5m_A SIR4-interacting protei 96.3 0.18 6.2E-06 48.7 17.7 136 217-383 170-322 (425)
104 2vdu_B TRNA (guanine-N(7)-)-me 96.3 0.8 2.7E-05 45.3 22.8 150 202-384 115-275 (450)
105 1got_B GT-beta; complex (GTP-b 96.2 0.49 1.7E-05 44.9 20.3 185 201-432 108-300 (340)
106 3no2_A Uncharacterized protein 96.2 0.74 2.5E-05 42.6 21.3 202 165-414 14-230 (276)
107 4a2l_A BT_4663, two-component 96.2 0.16 5.6E-06 54.8 18.6 178 166-387 427-621 (795)
108 2fp8_A Strictosidine synthase; 96.2 0.065 2.2E-06 50.9 13.7 198 159-382 94-315 (322)
109 4g56_B MGC81050 protein; prote 96.2 0.13 4.4E-06 49.7 16.0 146 201-382 105-260 (357)
110 3u4y_A Uncharacterized protein 96.2 0.16 5.4E-06 47.7 16.2 218 165-433 19-252 (331)
111 3dwl_C Actin-related protein 2 96.2 0.064 2.2E-06 51.6 13.6 213 167-415 34-270 (377)
112 2ynn_A Coatomer subunit beta'; 96.2 0.35 1.2E-05 45.2 18.4 182 201-433 66-259 (304)
113 3l2o_B F-box only protein 4; s 96.2 0.00093 3.2E-08 62.7 0.2 45 105-149 4-48 (312)
114 2hqs_A Protein TOLB; TOLB, PAL 96.1 0.19 6.6E-06 49.6 17.3 184 218-441 203-393 (415)
115 1kb0_A Quinohemoprotein alcoho 96.1 1.4 4.9E-05 46.5 24.9 117 198-330 74-207 (677)
116 4a2l_A BT_4663, two-component 96.1 1.4 4.7E-05 47.4 25.0 205 166-415 377-604 (795)
117 2hes_X YDR267CP; beta-propelle 96.1 0.055 1.9E-06 51.5 12.5 195 201-432 118-327 (330)
118 3ei3_B DNA damage-binding prot 96.1 0.29 9.9E-06 47.1 17.8 135 217-380 95-236 (383)
119 4aow_A Guanine nucleotide-bind 96.0 0.33 1.1E-05 45.3 17.8 148 251-434 186-338 (340)
120 3i2n_A WD repeat-containing pr 96.0 0.3 1E-05 46.0 17.4 153 203-385 32-204 (357)
121 1vyh_C Platelet-activating fac 96.0 0.27 9.3E-06 48.3 17.6 146 201-384 119-269 (410)
122 1npe_A Nidogen, entactin; glyc 96.0 0.89 3E-05 41.4 21.6 185 158-384 49-242 (267)
123 1yiq_A Quinohemoprotein alcoho 96.0 2 6.9E-05 45.4 27.4 116 158-281 72-200 (689)
124 3zwl_B Eukaryotic translation 96.0 0.37 1.3E-05 45.4 17.9 154 201-386 85-255 (369)
125 1w6s_A Methanol dehydrogenase 96.0 1.4 4.8E-05 45.9 23.4 118 198-330 59-199 (599)
126 2dg1_A DRP35, lactonase; beta 96.0 0.23 7.8E-06 46.8 16.2 191 165-386 65-269 (333)
127 1sq9_A Antiviral protein SKI8; 95.9 0.56 1.9E-05 45.0 19.4 112 249-383 197-325 (397)
128 2ad6_A Methanol dehydrogenase 95.9 1.9 6.4E-05 44.6 24.8 118 198-330 59-193 (571)
129 2hes_X YDR267CP; beta-propelle 95.9 0.47 1.6E-05 44.9 18.4 156 249-441 118-286 (330)
130 4gga_A P55CDC, cell division c 95.9 0.22 7.4E-06 49.0 16.4 139 216-382 123-263 (420)
131 1pjx_A Dfpase, DIISOPROPYLFLUO 95.9 0.15 5E-06 47.5 14.4 180 166-381 92-300 (314)
132 2ad6_A Methanol dehydrogenase 95.9 2 6.7E-05 44.5 31.6 115 159-281 65-193 (571)
133 3e5z_A Putative gluconolactona 95.8 1.1 3.8E-05 41.3 21.0 183 165-387 49-253 (296)
134 2ast_B S-phase kinase-associat 95.8 0.0027 9.3E-08 61.0 2.0 43 103-145 6-48 (336)
135 3lrv_A PRE-mRNA-splicing facto 95.8 1.4 4.6E-05 41.7 23.2 156 249-440 138-299 (343)
136 2ojh_A Uncharacterized protein 95.7 0.21 7.3E-06 45.3 14.6 190 165-389 61-267 (297)
137 1vyh_C Platelet-activating fac 95.7 0.51 1.7E-05 46.3 18.0 198 201-433 161-369 (410)
138 3bg1_A Protein SEC13 homolog; 95.7 0.18 6.2E-06 47.5 14.1 165 201-390 24-209 (316)
139 3fvz_A Peptidyl-glycine alpha- 95.6 1.5 5.2E-05 41.3 25.0 194 218-433 69-277 (329)
140 3k26_A Polycomb protein EED; W 95.6 1.5 5.1E-05 41.1 21.7 104 202-326 85-194 (366)
141 2fp8_A Strictosidine synthase; 95.6 0.52 1.8E-05 44.4 17.1 232 159-433 33-313 (322)
142 2ghs_A AGR_C_1268P; regucalcin 95.6 0.38 1.3E-05 45.7 16.2 181 165-386 70-266 (326)
143 2pm9_A Protein WEB1, protein t 95.6 0.6 2E-05 45.1 18.0 148 202-382 178-339 (416)
144 4gqb_B Methylosome protein 50; 95.6 0.2 7E-06 48.1 14.4 138 217-382 102-248 (344)
145 1sq9_A Antiviral protein SKI8; 95.5 0.58 2E-05 44.9 17.6 147 203-382 82-269 (397)
146 2hqs_A Protein TOLB; TOLB, PAL 95.5 0.55 1.9E-05 46.3 17.6 182 166-388 203-395 (415)
147 1qks_A Cytochrome CD1 nitrite 95.5 0.72 2.5E-05 47.7 19.1 239 158-445 168-436 (567)
148 2pbi_B Guanine nucleotide-bind 95.5 0.97 3.3E-05 43.2 19.0 143 249-433 165-315 (354)
149 3c5m_A Oligogalacturonate lyas 95.5 0.93 3.2E-05 43.3 19.0 149 217-388 167-337 (396)
150 1jmx_B Amine dehydrogenase; ox 95.5 1.1 3.9E-05 41.7 19.2 144 165-328 20-179 (349)
151 1kv9_A Type II quinohemoprotei 95.5 3.1 0.00011 43.8 30.9 115 158-280 68-194 (668)
152 2pm9_A Protein WEB1, protein t 95.4 0.83 2.8E-05 44.0 18.5 192 202-433 126-337 (416)
153 3e5z_A Putative gluconolactona 95.4 0.58 2E-05 43.2 16.6 150 201-383 39-206 (296)
154 1kv9_A Type II quinohemoprotei 95.4 2.9 0.0001 44.0 23.8 116 198-329 63-194 (668)
155 3hrp_A Uncharacterized protein 95.4 2.3 7.8E-05 41.8 23.1 195 166-387 152-361 (409)
156 1pby_B Quinohemoprotein amine 95.4 0.55 1.9E-05 43.6 16.5 151 158-328 3-167 (337)
157 4a11_B DNA excision repair pro 95.4 1.4 4.7E-05 42.1 19.7 189 203-433 157-365 (408)
158 1n7d_A LDL receptor, low-densi 95.4 0.16 5.5E-06 54.2 13.7 202 165-415 385-602 (699)
159 3azo_A Aminopeptidase; POP fam 95.3 1 3.5E-05 46.9 19.9 156 217-387 160-332 (662)
160 3v65_B Low-density lipoprotein 95.3 2.3 7.9E-05 41.4 21.7 173 165-382 137-320 (386)
161 2pbi_B Guanine nucleotide-bind 95.3 0.9 3.1E-05 43.4 17.9 136 217-382 175-317 (354)
162 4a0p_A LRP6, LRP-6, low-densit 95.3 3.4 0.00012 43.2 24.0 206 156-414 6-224 (628)
163 1yfq_A Cell cycle arrest prote 95.2 1.9 6.5E-05 40.1 21.4 146 201-381 67-226 (342)
164 3zwl_B Eukaryotic translation 95.2 0.77 2.6E-05 43.1 17.0 65 249-328 186-253 (369)
165 1nir_A Nitrite reductase; hemo 95.2 0.48 1.6E-05 48.8 16.4 234 158-434 192-459 (543)
166 3ei3_B DNA damage-binding prot 95.1 1.1 3.7E-05 42.9 17.9 144 251-433 87-236 (383)
167 3g4e_A Regucalcin; six bladed 95.1 0.89 3.1E-05 42.2 16.8 148 201-383 24-185 (297)
168 3fm0_A Protein CIAO1; WDR39,SG 95.1 0.8 2.7E-05 43.5 16.7 146 201-378 72-223 (345)
169 1erj_A Transcriptional repress 95.0 1 3.6E-05 43.6 17.6 152 201-382 176-343 (393)
170 1yfq_A Cell cycle arrest prote 95.0 0.89 3.1E-05 42.4 16.5 213 164-418 77-314 (342)
171 3mkq_A Coatomer beta'-subunit; 95.0 0.26 9E-06 52.7 14.2 177 165-383 76-262 (814)
172 1flg_A Protein (quinoprotein e 95.0 4 0.00014 42.2 22.8 114 159-280 71-200 (582)
173 2ynn_A Coatomer subunit beta'; 94.9 0.69 2.4E-05 43.0 15.5 136 217-381 34-173 (304)
174 3fvz_A Peptidyl-glycine alpha- 94.9 2.5 8.7E-05 39.7 22.6 156 201-380 154-322 (329)
175 3odt_A Protein DOA1; ubiquitin 94.8 2.3 7.9E-05 38.8 20.0 143 201-382 70-216 (313)
176 1erj_A Transcriptional repress 94.8 0.54 1.9E-05 45.7 14.8 105 249-383 134-241 (393)
177 2z3z_A Dipeptidyl aminopeptida 94.7 4.8 0.00016 42.1 24.4 111 265-387 234-351 (706)
178 4e54_B DNA damage-binding prot 94.7 0.17 5.7E-06 50.1 11.1 145 202-382 132-284 (435)
179 4gga_A P55CDC, cell division c 94.7 3.4 0.00012 40.2 21.4 220 165-433 124-353 (420)
180 1yiq_A Quinohemoprotein alcoho 94.7 5.2 0.00018 42.3 26.2 117 198-330 67-200 (689)
181 2dg1_A DRP35, lactonase; beta 94.7 0.15 5.1E-06 48.1 10.2 154 201-380 55-213 (333)
182 1w6s_A Methanol dehydrogenase 94.7 4.8 0.00016 41.8 28.3 115 159-281 65-199 (599)
183 3hrp_A Uncharacterized protein 94.7 2.1 7.1E-05 42.1 18.8 159 201-379 230-409 (409)
184 1pgu_A Actin interacting prote 94.6 1.7 5.6E-05 44.3 18.8 143 250-432 456-613 (615)
185 3odt_A Protein DOA1; ubiquitin 94.6 2.6 8.8E-05 38.4 19.5 141 249-433 154-296 (313)
186 3b7f_A Glycosyl hydrolase, BNR 94.6 2.9 9.8E-05 40.6 19.6 156 219-387 32-215 (394)
187 1ijq_A LDL receptor, low-densi 94.5 3.3 0.00011 38.9 21.7 147 200-382 87-240 (316)
188 4ggc_A P55CDC, cell division c 94.4 0.81 2.8E-05 42.1 14.6 138 217-382 44-183 (318)
189 1flg_A Protein (quinoprotein e 94.4 5.5 0.00019 41.2 22.8 116 198-329 65-200 (582)
190 3f3f_A Nucleoporin SEH1; struc 94.4 3.1 0.00011 38.2 23.1 148 202-381 71-250 (351)
191 3tc9_A Hypothetical hydrolase; 94.4 1.2 4E-05 44.3 16.3 202 158-387 151-377 (430)
192 3ott_A Two-component system se 94.3 1.9 6.6E-05 46.0 19.1 181 166-386 392-592 (758)
193 2aq5_A Coronin-1A; WD40 repeat 94.3 2.4 8.2E-05 40.9 18.2 157 203-389 145-310 (402)
194 3hxj_A Pyrrolo-quinoline quino 94.3 1.5 5.1E-05 40.8 16.2 193 159-414 110-312 (330)
195 3m0c_C LDL receptor, low-densi 94.3 2.7 9.3E-05 45.3 19.9 145 201-381 482-633 (791)
196 3lrv_A PRE-mRNA-splicing facto 94.2 2.6 8.7E-05 39.7 17.9 66 297-383 138-204 (343)
197 2z3z_A Dipeptidyl aminopeptida 94.1 6.1 0.00021 41.3 22.2 150 216-387 233-398 (706)
198 3i2n_A WD repeat-containing pr 94.1 1.5 5.2E-05 40.9 16.0 143 202-381 80-244 (357)
199 3pe7_A Oligogalacturonate lyas 94.0 2.3 7.9E-05 40.5 17.4 153 217-388 167-337 (388)
200 2ecf_A Dipeptidyl peptidase IV 94.0 5.5 0.00019 41.8 21.6 103 267-387 264-375 (741)
201 2p1m_B Transport inhibitor res 93.9 0.016 5.5E-07 60.1 1.6 36 104-139 4-40 (594)
202 4a11_B DNA excision repair pro 93.9 1.5 5.1E-05 41.8 15.7 158 201-383 111-279 (408)
203 3k26_A Polycomb protein EED; W 93.8 4.2 0.00014 37.8 19.5 22 361-382 299-320 (366)
204 3azo_A Aminopeptidase; POP fam 93.8 3 0.0001 43.3 18.8 190 166-387 161-376 (662)
205 3iz6_a 40S ribosomal protein R 93.8 3.1 0.00011 39.9 17.7 184 217-433 179-375 (380)
206 2p4o_A Hypothetical protein; p 93.6 4.5 0.00015 37.6 21.6 150 201-380 42-198 (306)
207 4e54_B DNA damage-binding prot 93.5 0.51 1.7E-05 46.6 11.8 107 250-382 132-242 (435)
208 4hw6_A Hypothetical protein, I 93.5 2.4 8.2E-05 42.1 16.7 194 166-387 162-380 (433)
209 3mmy_A MRNA export factor; mRN 93.5 2.5 8.7E-05 39.4 16.3 187 162-383 104-307 (368)
210 3sov_A LRP-6, low-density lipo 93.5 5.2 0.00018 37.8 20.3 169 201-414 46-225 (318)
211 4aow_A Guanine nucleotide-bind 93.4 2.2 7.6E-05 39.5 15.6 147 201-382 97-248 (340)
212 3p5b_L Low density lipoprotein 93.3 6.3 0.00021 38.5 19.2 146 201-382 170-322 (400)
213 3sfz_A APAF-1, apoptotic pepti 93.3 0.51 1.7E-05 53.3 12.6 147 201-383 1014-1161(1249)
214 1pex_A Collagenase-3, MMP-13; 93.2 4.2 0.00015 35.9 19.0 154 196-385 28-197 (207)
215 3v64_C Agrin; beta propeller, 93.2 6.1 0.00021 37.7 24.6 174 165-383 94-278 (349)
216 2oiz_A Aromatic amine dehydrog 93.1 6.2 0.00021 37.7 18.9 78 360-455 265-355 (361)
217 3iz6_a 40S ribosomal protein R 93.1 4.3 0.00015 38.9 17.6 182 165-381 179-376 (380)
218 2ymu_A WD-40 repeat protein; u 92.8 1.7 5.9E-05 44.0 14.8 132 249-417 437-570 (577)
219 2ghs_A AGR_C_1268P; regucalcin 92.6 0.95 3.3E-05 42.8 11.8 143 201-379 60-209 (326)
220 3sfz_A APAF-1, apoptotic pepti 92.6 1.6 5.6E-05 49.1 15.6 186 201-433 972-1158(1249)
221 1pgu_A Actin interacting prote 92.5 6.2 0.00021 40.0 18.6 142 202-380 456-614 (615)
222 3b7f_A Glycosyl hydrolase, BNR 92.3 8.6 0.00029 37.1 25.1 202 201-446 128-384 (394)
223 3c5m_A Oligogalacturonate lyas 92.3 3.5 0.00012 39.1 15.6 154 166-331 168-336 (396)
224 3dr2_A Exported gluconolactona 92.1 2 6.7E-05 40.0 13.1 179 201-414 96-295 (305)
225 2xyi_A Probable histone-bindin 92.0 0.91 3.1E-05 44.6 11.2 102 252-380 196-309 (430)
226 3f3f_A Nucleoporin SEH1; struc 92.0 7.2 0.00025 35.6 22.2 194 201-433 22-249 (351)
227 3ott_A Two-component system se 91.9 10 0.00035 40.3 20.0 174 166-387 82-267 (758)
228 2ymu_A WD-40 repeat protein; u 91.9 3.9 0.00013 41.3 16.2 142 201-382 355-500 (577)
229 3mmy_A MRNA export factor; mRN 91.9 3.7 0.00013 38.2 15.0 149 250-441 54-207 (368)
230 4h5i_A Guanine nucleotide-exch 91.9 9 0.00031 36.5 18.0 181 216-432 155-342 (365)
231 4h5i_A Guanine nucleotide-exch 91.8 4.3 0.00015 38.8 15.5 151 201-381 187-344 (365)
232 3kya_A Putative phosphatase; s 91.6 6 0.00021 40.0 16.7 209 158-387 153-416 (496)
233 1qhu_A Protein (hemopexin); be 91.5 5.4 0.00019 39.9 16.0 58 201-277 158-217 (460)
234 3hxj_A Pyrrolo-quinoline quino 91.4 5.2 0.00018 36.9 15.4 138 199-385 105-250 (330)
235 3frx_A Guanine nucleotide-bind 91.4 5.8 0.0002 36.9 15.7 142 249-433 76-227 (319)
236 2ece_A 462AA long hypothetical 91.3 4.8 0.00016 40.2 15.2 117 201-326 95-239 (462)
237 1jmx_B Amine dehydrogenase; ox 91.2 1.3 4.3E-05 41.4 10.8 68 248-328 9-78 (349)
238 1n7d_A LDL receptor, low-densi 91.0 2.7 9.1E-05 44.6 14.1 149 200-384 463-618 (699)
239 4a0p_A LRP6, LRP-6, low-densit 91.0 17 0.00057 37.9 20.9 161 218-415 15-185 (628)
240 2bkl_A Prolyl endopeptidase; m 90.9 17 0.00059 38.0 24.4 175 217-415 146-337 (695)
241 3ju4_A Endo-N-acetylneuraminid 90.9 11 0.00039 36.6 16.5 178 227-418 269-483 (670)
242 2xzm_R RACK1; ribosome, transl 90.9 10 0.00036 35.4 19.9 63 249-326 87-151 (343)
243 3ogk_B Coronatine-insensitive 90.8 0.082 2.8E-06 54.8 2.0 35 107-141 14-49 (592)
244 1qhu_A Protein (hemopexin); be 90.8 11 0.00038 37.6 17.4 137 249-416 158-322 (460)
245 2hz6_A Endoplasmic reticulum t 90.6 0.12 4E-06 50.4 2.9 142 198-385 6-156 (369)
246 2xyi_A Probable histone-bindin 90.6 3.2 0.00011 40.6 13.6 142 204-380 196-353 (430)
247 3gre_A Serine/threonine-protei 90.6 5 0.00017 38.9 14.9 160 201-382 181-361 (437)
248 3dm0_A Maltose-binding peripla 90.5 12 0.00042 39.0 18.7 146 249-433 441-592 (694)
249 2xbg_A YCF48-like protein; pho 90.5 12 0.0004 35.2 24.4 213 175-443 65-287 (327)
250 3sov_A LRP-6, low-density lipo 90.4 12 0.00041 35.2 22.1 146 200-383 89-241 (318)
251 2ecf_A Dipeptidyl peptidase IV 90.3 11 0.00039 39.4 18.3 58 218-283 129-189 (741)
252 1pby_B Quinohemoprotein amine 90.1 1.5 5.3E-05 40.5 10.2 143 217-384 10-167 (337)
253 3oyo_A Hemopexin fold protein 90.1 9.1 0.00031 34.2 14.8 146 200-380 12-198 (225)
254 2xdw_A Prolyl endopeptidase; a 89.9 10 0.00035 39.8 17.5 145 217-387 258-423 (710)
255 3gre_A Serine/threonine-protei 89.4 16 0.00054 35.2 17.7 107 249-382 181-294 (437)
256 1qks_A Cytochrome CD1 nitrite 89.4 11 0.00037 38.8 16.7 198 157-392 209-438 (567)
257 3dm0_A Maltose-binding peripla 89.1 8.4 0.00029 40.3 16.1 147 201-382 441-594 (694)
258 3pe7_A Oligogalacturonate lyas 89.0 4.6 0.00016 38.3 13.0 160 166-332 168-337 (388)
259 3frx_A Guanine nucleotide-bind 89.0 5.8 0.0002 36.9 13.4 144 201-382 76-229 (319)
260 2xbg_A YCF48-like protein; pho 88.5 16 0.00056 34.2 19.8 152 226-414 23-180 (327)
261 3o4h_A Acylamino-acid-releasin 88.3 22 0.00076 36.0 18.3 137 218-385 90-232 (582)
262 2mad_H Methylamine dehydrogena 88.2 19 0.00064 34.6 26.7 81 360-455 278-369 (373)
263 2oit_A Nucleoporin 214KDA; NH2 88.0 11 0.00039 36.9 15.4 60 250-324 162-223 (434)
264 3tc9_A Hypothetical hydrolase; 87.4 3.1 0.00011 41.1 10.7 132 249-414 149-288 (430)
265 3dr2_A Exported gluconolactona 87.3 13 0.00045 34.1 14.6 152 166-331 107-274 (305)
266 3o4h_A Acylamino-acid-releasin 87.2 2.6 8.9E-05 43.1 10.4 140 220-378 134-274 (582)
267 1itv_A MMP9; adaptive molecula 87.0 15 0.0005 32.0 17.1 152 196-383 11-177 (195)
268 2hz6_A Endoplasmic reticulum t 86.8 0.42 1.4E-05 46.4 3.8 145 246-440 6-156 (369)
269 1nr0_A Actin interacting prote 86.8 17 0.00058 37.3 16.5 145 204-382 162-315 (611)
270 1su3_A Interstitial collagenas 86.3 28 0.00096 34.6 17.1 151 196-386 267-438 (450)
271 3sjl_D Methylamine dehydrogena 85.7 27 0.00094 33.9 19.8 101 166-278 59-172 (386)
272 2gop_A Trilobed protease; beta 85.6 22 0.00074 32.9 15.3 103 217-331 151-258 (347)
273 1k32_A Tricorn protease; prote 85.5 21 0.0007 39.5 17.2 140 218-387 317-468 (1045)
274 3s94_A LRP-6, low-density lipo 85.1 38 0.0013 35.0 22.5 169 201-414 360-538 (619)
275 4hw6_A Hypothetical protein, I 84.9 21 0.00071 35.2 15.3 159 201-379 239-432 (433)
276 2qe8_A Uncharacterized protein 84.9 26 0.00087 32.9 22.0 56 356-416 253-310 (343)
277 3iuj_A Prolyl endopeptidase; h 84.8 17 0.00057 38.2 15.4 144 217-389 258-414 (693)
278 4ggc_A P55CDC, cell division c 84.7 22 0.00076 32.0 16.2 95 266-383 45-141 (318)
279 3c75_H MADH, methylamine dehyd 83.9 35 0.0012 33.6 17.5 100 166-278 99-212 (426)
280 3ba0_A Macrophage metalloelast 83.9 32 0.0011 33.1 17.7 151 196-385 185-355 (365)
281 1k32_A Tricorn protease; prote 83.9 36 0.0012 37.4 18.3 98 266-387 317-416 (1045)
282 3c7x_A Matrix metalloproteinas 83.8 18 0.00062 31.4 12.7 148 197-382 11-177 (196)
283 2cn3_A Xyloglucanase, beta-1,4 83.7 48 0.0016 35.1 27.0 244 166-441 45-343 (737)
284 2bkl_A Prolyl endopeptidase; m 83.7 7.2 0.00024 40.9 11.9 146 217-387 251-404 (695)
285 3lp9_A LS-24; SEED albumin, pl 82.8 13 0.00044 33.3 11.5 20 360-381 183-202 (227)
286 1jof_A Carboxy-CIS,CIS-muconat 82.6 32 0.0011 32.3 16.1 28 360-387 321-348 (365)
287 1yr2_A Prolyl oligopeptidase; 82.5 20 0.00067 37.9 14.9 147 217-388 293-449 (741)
288 3oyo_A Hemopexin fold protein 81.7 12 0.00041 33.4 10.9 55 360-416 127-189 (225)
289 2xdw_A Prolyl endopeptidase; a 80.9 38 0.0013 35.4 16.3 148 165-331 258-423 (710)
290 3c75_H MADH, methylamine dehyd 80.7 46 0.0016 32.7 17.7 75 360-449 330-415 (426)
291 2xzm_R RACK1; ribosome, transl 80.3 37 0.0013 31.5 16.7 21 360-380 224-244 (343)
292 2oiz_A Aromatic amine dehydrog 79.9 41 0.0014 31.8 17.6 74 297-389 265-343 (361)
293 2mad_H Methylamine dehydrogena 79.5 44 0.0015 31.9 26.4 99 167-278 48-159 (373)
294 3sjl_D Methylamine dehydrogena 78.0 52 0.0018 31.9 19.4 60 166-230 109-172 (386)
295 3vu4_A KMHSV2; beta-propeller 76.8 49 0.0017 30.9 18.3 64 360-433 206-271 (355)
296 1hxn_A Hemopexin, HPX; heme, b 76.7 40 0.0014 29.8 13.6 94 200-324 27-144 (219)
297 1xfd_A DIP, dipeptidyl aminope 75.9 52 0.0018 34.0 15.5 62 266-330 228-295 (723)
298 3kya_A Putative phosphatase; s 75.9 52 0.0018 33.0 14.6 77 297-381 390-476 (496)
299 3a0f_A Xyloglucanase; beta-pro 75.5 87 0.003 33.2 24.2 263 158-441 35-351 (763)
300 1sqj_A OXG-RCBH, oligoxylogluc 75.4 90 0.0031 33.3 26.7 258 167-442 38-340 (789)
301 3dw8_B Serine/threonine-protei 75.2 22 0.00075 34.1 11.6 27 360-386 353-379 (447)
302 2cn3_A Xyloglucanase, beta-1,4 73.7 95 0.0032 32.7 25.5 248 175-446 10-294 (737)
303 2gop_A Trilobed protease; beta 72.8 57 0.0019 29.9 13.5 142 216-387 41-214 (347)
304 2xe4_A Oligopeptidase B; hydro 72.3 82 0.0028 33.2 16.0 99 216-322 293-398 (751)
305 1hxn_A Hemopexin, HPX; heme, b 71.7 53 0.0018 29.0 13.8 140 248-416 27-188 (219)
306 3vu4_A KMHSV2; beta-propeller 71.6 66 0.0022 30.0 20.6 64 297-381 206-272 (355)
307 1fwx_A Nitrous oxide reductase 70.9 29 0.00098 35.8 11.3 211 201-446 101-380 (595)
308 2ece_A 462AA long hypothetical 70.9 87 0.003 31.1 16.0 32 360-391 332-364 (462)
309 1pex_A Collagenase-3, MMP-13; 70.3 55 0.0019 28.6 16.2 136 244-416 28-183 (207)
310 2oaj_A Protein SNI1; WD40 repe 70.2 1.3E+02 0.0043 32.6 19.6 107 250-384 69-186 (902)
311 1gen_A Gelatinase A; hydrolase 69.5 59 0.002 28.6 16.6 148 196-382 35-204 (218)
312 1su3_A Interstitial collagenas 69.0 41 0.0014 33.4 11.8 48 360-416 367-423 (450)
313 1yr2_A Prolyl oligopeptidase; 69.0 92 0.0031 32.6 15.5 148 166-332 294-449 (741)
314 1fwx_A Nitrous oxide reductase 68.7 29 0.001 35.7 10.8 269 156-456 101-452 (595)
315 2qe8_A Uncharacterized protein 66.6 82 0.0028 29.2 16.1 123 249-386 27-161 (343)
316 1sqj_A OXG-RCBH, oligoxylogluc 66.0 1.4E+02 0.0048 31.7 26.3 236 176-446 4-280 (789)
317 1xfd_A DIP, dipeptidyl aminope 65.2 59 0.002 33.6 13.0 59 217-282 90-150 (723)
318 3iuj_A Prolyl endopeptidase; h 64.9 1.3E+02 0.0046 31.1 20.0 172 217-414 154-344 (693)
319 3s94_A LRP-6, low-density lipo 64.5 1.3E+02 0.0046 30.9 20.3 129 249-414 360-497 (619)
320 2p9w_A MAL S 1 allergenic prot 63.8 1E+02 0.0034 29.2 25.6 231 158-417 26-305 (334)
321 3lp9_A LS-24; SEED albumin, pl 61.4 45 0.0015 29.6 9.5 101 200-325 71-202 (227)
322 1nr0_A Actin interacting prote 60.1 1.5E+02 0.0051 30.0 19.2 109 201-330 250-361 (611)
323 3ju4_A Endo-N-acetylneuraminid 56.5 1.1E+02 0.0038 29.9 11.4 128 275-419 269-409 (670)
324 1itv_A MMP9; adaptive molecula 55.5 1E+02 0.0034 26.5 12.0 99 201-326 64-176 (195)
325 2p9w_A MAL S 1 allergenic prot 55.1 1.4E+02 0.0048 28.2 20.3 153 202-381 25-216 (334)
326 3ukw_C Bimax1 peptide; arm rep 53.6 5.9 0.0002 21.6 1.3 18 33-50 7-24 (28)
327 2j04_A TAU60, YPL007P, hypothe 53.4 2E+02 0.0069 29.4 16.6 110 249-382 96-213 (588)
328 3dw8_B Serine/threonine-protei 52.8 1.5E+02 0.0052 27.8 15.5 67 360-433 188-258 (447)
329 1gen_A Gelatinase A; hydrolase 51.2 1.3E+02 0.0043 26.4 10.7 101 201-326 87-204 (218)
330 1z68_A Fibroblast activation p 48.4 2.4E+02 0.0082 28.9 16.8 17 371-387 337-353 (719)
331 3qqz_A Putative uncharacterize 47.3 1.3E+02 0.0045 27.1 10.3 77 284-382 22-102 (255)
332 3ba0_A Macrophage metalloelast 46.4 2E+02 0.0069 27.4 13.7 104 201-329 236-355 (365)
333 2j04_A TAU60, YPL007P, hypothe 46.3 2.6E+02 0.0089 28.6 18.2 137 218-386 107-260 (588)
334 3c7x_A Matrix metalloproteinas 44.5 1.5E+02 0.0052 25.4 12.0 102 200-326 60-177 (196)
335 1ck7_A Protein (gelatinase A); 44.3 1.6E+02 0.0056 30.4 11.6 149 196-382 448-617 (631)
336 2be1_A Serine/threonine-protei 43.6 1.2E+02 0.0042 28.6 9.9 115 156-283 10-140 (339)
337 4hvt_A Ritya.17583.B, post-pro 42.7 3.2E+02 0.011 28.6 13.9 150 216-390 267-439 (711)
338 3sre_A PON1, serum paraoxonase 39.3 2.2E+02 0.0074 27.0 11.0 144 216-380 81-252 (355)
339 3ei3_A DNA damage-binding prot 39.1 2.4E+02 0.0081 31.6 12.7 111 216-340 862-973 (1158)
340 3q6k_A 43.2 kDa salivary prote 38.0 2.8E+02 0.0095 26.6 18.4 201 201-415 97-342 (381)
341 3k6s_A Integrin alpha-X; cell 36.9 2.4E+02 0.0082 31.3 12.2 96 361-457 398-510 (1095)
342 3ei3_A DNA damage-binding prot 35.6 5.1E+02 0.017 28.9 15.8 107 265-393 863-970 (1158)
343 4fj6_A Glycoside hydrolase fam 34.9 3E+02 0.01 27.6 11.7 142 295-456 333-493 (523)
344 2xe4_A Oligopeptidase B; hydro 34.8 4.1E+02 0.014 27.7 16.1 149 165-331 294-465 (751)
345 4gq1_A NUP37; propeller, trans 32.0 1.7E+02 0.0057 27.6 9.0 104 251-382 102-220 (393)
346 3a0f_A Xyloglucanase; beta-pro 30.7 4.9E+02 0.017 27.3 23.1 208 219-446 44-295 (763)
347 2be1_A Serine/threonine-protei 30.6 54 0.0019 31.1 5.0 26 360-385 55-81 (339)
348 2oaj_A Protein SNI1; WD40 repe 29.2 5.5E+02 0.019 27.4 19.0 26 360-385 222-247 (902)
349 1jof_A Carboxy-CIS,CIS-muconat 27.0 3.7E+02 0.013 24.6 19.2 86 360-455 265-363 (365)
350 3k6s_A Integrin alpha-X; cell 26.0 7E+02 0.024 27.6 13.8 134 241-389 335-491 (1095)
351 3qqz_A Putative uncharacterize 25.0 3.7E+02 0.013 24.0 22.2 179 201-414 38-241 (255)
352 2g8s_A Glucose/sorbosone dehyd 22.1 4.7E+02 0.016 24.2 11.4 23 359-381 139-174 (353)
353 2kwv_A RAD30 homolog B, DNA po 21.0 53 0.0018 21.1 1.9 23 102-124 17-39 (48)
No 1
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=345.09 Aligned_cols=280 Identities=23% Similarity=0.359 Sum_probs=243.8
Q ss_pred ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceE
Q 012701 141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVI 220 (458)
Q Consensus 141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v 220 (458)
..+.+|++||..... .+++++||+.+++|..++++|.+|.. +++++++++|||+||.... ...+++
T Consensus 14 ~~~~i~v~GG~~~~~---------~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~-~~~~~~ 79 (302)
T 2xn4_A 14 LPKLMVVVGGQAPKA---------IRSVECYDFKEERWHQVAELPSRRCR----AGMVYMAGLVFAVGGFNGS-LRVRTV 79 (302)
T ss_dssp -CEEEEEECCBSSSB---------CCCEEEEETTTTEEEEECCCSSCCBS----CEEEEETTEEEEESCBCSS-SBCCCE
T ss_pred CCCEEEEECCCCCCC---------CCcEEEEcCcCCcEeEcccCCccccc----ceEEEECCEEEEEeCcCCC-ccccce
Confidence 467899999976532 56789999999999999999998864 4457889999999998544 356889
Q ss_pred EEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEE
Q 012701 221 YRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKF 300 (458)
Q Consensus 221 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~l 300 (458)
++||+.+++|+.+++||.+|..|++++++++|||+||.+.. ..++++++||+.+++|+.+++||.+|..|++++++++|
T Consensus 80 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i 158 (302)
T 2xn4_A 80 DSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLL 158 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEE
Confidence 99999999999999999999999999999999999998764 45789999999999999999999999999999999999
Q ss_pred EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEE
Q 012701 301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRK 375 (458)
Q Consensus 301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~ 375 (458)
||+||..+.....++++++||+.+++|+.++++|.+|..+ ++++++++||++||.. +++++
T Consensus 159 yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~ 224 (302)
T 2xn4_A 159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGA--------------GVGVLNNLLYAVGGHDGPLVRKSVEV 224 (302)
T ss_dssp EEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEECCBSSSSBCCCEEE
T ss_pred EEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccc--------------cEEEECCEEEEECCCCCCcccceEEE
Confidence 9999987544456788999999999999999999999998 8899999999999853 68999
Q ss_pred EeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEee-ccCCCceeeeEE
Q 012701 376 YDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLA-RKQSANFVYNCA 454 (458)
Q Consensus 376 yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~-~~p~~~~~~~~~ 454 (458)
||+.+++|+.++.+|.++. ++++++++++|||+||.... ....++.+|++.. ++|+.++ .+|.+|..|+++
T Consensus 225 yd~~~~~W~~~~~~~~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~~--~~W~~~~~~~~~~r~~~~~~ 296 (302)
T 2xn4_A 225 YDPTTNAWRQVADMNMCRR-----NAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPTT--DKWTVVSSCMSTGRSYAGVT 296 (302)
T ss_dssp EETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEEEEETTT--TEEEECSSCCSSCCBSCEEE
T ss_pred EeCCCCCEeeCCCCCCccc-----cCeEEEECCEEEEECCcCCC-cccccEEEEcCCC--CeEEECCcccCcccccceEE
Confidence 9999999999999988764 46677889999999997543 2345667777654 8999997 899999999999
Q ss_pred Eee
Q 012701 455 VMG 457 (458)
Q Consensus 455 v~g 457 (458)
+++
T Consensus 297 ~~~ 299 (302)
T 2xn4_A 297 VID 299 (302)
T ss_dssp EEE
T ss_pred Eec
Confidence 986
No 2
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=8.3e-44 Score=347.35 Aligned_cols=282 Identities=24% Similarity=0.370 Sum_probs=244.0
Q ss_pred HHHhccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCC---CC
Q 012701 137 RSLIRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGREL---TA 213 (458)
Q Consensus 137 r~lv~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~---~~ 213 (458)
+++..++.+|++||..+. ..+++++||+.+++|..++++|.+|.. +++++++++|||+||.. ..
T Consensus 19 ~~~~~~~~i~v~GG~~~~---------~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~~ 85 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGYFRQ---------SLSYLEAYNPSNGTWLRLADLQVPRSG----LAGCVVGGLLYAVGGRNNSPDG 85 (308)
T ss_dssp --CCCCCCEEEECCBSSS---------BCCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCEEEETTE
T ss_pred cccCCCCEEEEEeCcCCC---------CcceEEEEcCCCCeEeECCCCCccccc----ceEEEECCEEEEECCCcCCCCC
Confidence 345678999999998322 256899999999999999999998864 44678899999999973 23
Q ss_pred cCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE
Q 012701 214 HHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293 (458)
Q Consensus 214 ~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 293 (458)
....+++++||+.+++|+.+++||.+|..|+++.++++|||+||.+.. ..++++++||+.+++|+.++++|.+|..|++
T Consensus 86 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164 (308)
T ss_dssp EEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred CeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccceEE
Confidence 336678999999999999999999999999999999999999998764 4578999999999999999999999999999
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--- 370 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--- 370 (458)
++++++|||+||..+. ..++++++||+.+++|+.++++|.+|..+ ++++++++||++||..
T Consensus 165 ~~~~~~iyv~GG~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~ 228 (308)
T 1zgk_A 165 AVLNRLLYAVGGFDGT--NRLNSAECYYPERNEWRMITAMNTIRSGA--------------GVCVLHNCIYAAGGYDGQD 228 (308)
T ss_dssp EEETTEEEEECCBCSS--CBCCCEEEEETTTTEEEECCCCSSCCBSC--------------EEEEETTEEEEECCBCSSS
T ss_pred EEECCEEEEEeCCCCC--CcCceEEEEeCCCCeEeeCCCCCCccccc--------------eEEEECCEEEEEeCCCCCC
Confidence 9999999999998743 34788999999999999999999999998 8899999999999864
Q ss_pred --CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCc
Q 012701 371 --MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSAN 448 (458)
Q Consensus 371 --~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~ 448 (458)
+++++||+.+++|+.++++|.++. ++++++++++|||+||.... ....++.+|++. +++|+.++.+|.+|
T Consensus 229 ~~~~v~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~p~~r 300 (308)
T 1zgk_A 229 QLNSVERYDVETETWTFVAPMKHRRS-----ALGITVHQGRIYVLGGYDGH-TFLDSVECYDPD--TDTWSEVTRMTSGR 300 (308)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-CBCCEEEEEETT--TTEEEEEEECSSCC
T ss_pred ccceEEEEeCCCCcEEECCCCCCCcc-----ceEEEEECCEEEEEcCcCCC-cccceEEEEcCC--CCEEeecCCCCCCc
Confidence 789999999999999999988774 46677889999999997643 344566677765 49999999999999
Q ss_pred eeeeEEEe
Q 012701 449 FVYNCAVM 456 (458)
Q Consensus 449 ~~~~~~v~ 456 (458)
+.|+|+++
T Consensus 301 ~~~~~~~l 308 (308)
T 1zgk_A 301 SGVGVAVT 308 (308)
T ss_dssp BSCEEEEC
T ss_pred ccceeEeC
Confidence 99999985
No 3
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=3e-43 Score=342.61 Aligned_cols=276 Identities=20% Similarity=0.290 Sum_probs=240.9
Q ss_pred cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEE
Q 012701 142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIY 221 (458)
Q Consensus 142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 221 (458)
.+.+|++||... .+++++||+.+++|..++++|.+|.. +++++++++|||+||.. ....++++
T Consensus 11 ~~~l~~~GG~~~-----------~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~--~~~~~~~~ 73 (306)
T 3ii7_A 11 HDYRIALFGGSQ-----------PQSCRYFNPKDYSWTDIRCPFEKRRD----AACVFWDNVVYILGGSQ--LFPIKRMD 73 (306)
T ss_dssp CCEEEEEECCSS-----------TTSEEEEETTTTEEEECCCCSCCCBS----CEEEEETTEEEEECCBS--SSBCCEEE
T ss_pred cceEEEEeCCCC-----------CceEEEecCCCCCEecCCCCCcccce----eEEEEECCEEEEEeCCC--CCCcceEE
Confidence 467899998755 45789999999999999999998864 45688999999999986 44778999
Q ss_pred EEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEE
Q 012701 222 RYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFY 301 (458)
Q Consensus 222 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~ly 301 (458)
+||+.+++|+.++++|.+|..|+++.++++|||+||.+.....++++++||+.+++|+.+++||.+|..|++++++++||
T Consensus 74 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 153 (306)
T 3ii7_A 74 CYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIY 153 (306)
T ss_dssp EEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred EEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEE
Confidence 99999999999999999999999999999999999997555678999999999999999999999999999999999999
Q ss_pred EEccccCCCC--cccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEE
Q 012701 302 VIGGIGGSDS--KVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVR 374 (458)
Q Consensus 302 v~GG~~~~~~--~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~ 374 (458)
|+||...... ..++++++||+.+++|+.++++|.+|..+ ++++++++||++||.. ++++
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~i~v~GG~~~~~~~~~~~ 219 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNH--------------GLVFVKDKIFAVGGQNGLGGLDNVE 219 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEECCEETTEEBCCEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcc--------------eEEEECCEEEEEeCCCCCCCCceEE
Confidence 9999873321 23788999999999999999999999998 8899999999999853 6899
Q ss_pred EEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCceeeeEE
Q 012701 375 KYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFVYNCA 454 (458)
Q Consensus 375 ~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~ 454 (458)
+||+.+++|+.++.+|.++. ++++++++++|||+||.... ....++.+|++ .+++|+.++.+|.++..|+++
T Consensus 220 ~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~ 291 (306)
T 3ii7_A 220 YYDIKLNEWKMVSPMPWKGV-----TVKCAAVGSIVYVLAGFQGV-GRLGHILEYNT--ETDKWVANSKVRAFPVTSCLI 291 (306)
T ss_dssp EEETTTTEEEECCCCSCCBS-----CCEEEEETTEEEEEECBCSS-SBCCEEEEEET--TTTEEEEEEEEECCSCTTCEE
T ss_pred EeeCCCCcEEECCCCCCCcc-----ceeEEEECCEEEEEeCcCCC-eeeeeEEEEcC--CCCeEEeCCCcccccceeEEE
Confidence 99999999999999998775 46677889999999997644 24456666666 459999999999999999988
Q ss_pred Ee
Q 012701 455 VM 456 (458)
Q Consensus 455 v~ 456 (458)
++
T Consensus 292 ~~ 293 (306)
T 3ii7_A 292 CV 293 (306)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 4
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-42 Score=335.19 Aligned_cols=280 Identities=22% Similarity=0.358 Sum_probs=242.8
Q ss_pred hccCcEEEeec-ccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccc
Q 012701 140 IRSGELYRLRR-LNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISH 218 (458)
Q Consensus 140 v~s~~~y~~gg-~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~ 218 (458)
..++.+|++|| ..... ..+++++||+.+++|..++++|.+|.. +++++++++||++||.... ...+
T Consensus 12 ~~~~~i~~~GG~~~~~~--------~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~l~v~GG~~~~-~~~~ 78 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQS--------PIDVVEKYDPKTQEWSFLPSITRKRRY----VASVSLHDRIYVIGGYDGR-SRLS 78 (301)
T ss_dssp -CCEEEEEECCEETTTE--------ECCCEEEEETTTTEEEECCCCSSCCBS----CEEEEETTEEEEECCBCSS-CBCC
T ss_pred cCCCEEEEEeCccCCCc--------ceeEEEEEcCCCCeEEeCCCCChhhcc----ccEEEECCEEEEEcCCCCC-ccCc
Confidence 35788999999 44322 267899999999999999999998754 4468889999999998633 3678
Q ss_pred eEEEEEcCCCc---eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 219 VIYRYSILTNS---WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 219 ~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
++++||+.+++ |+.++++|.+|..|+++.++++|||+||.++. ..++++++||+.+++|+.++++|.+|..|++++
T Consensus 79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157 (301)
T ss_dssp CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred eEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCcccceEEE
Confidence 89999999999 99999999999999999999999999999865 357899999999999999999999999999999
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC-----C
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA-----D 370 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~-----~ 370 (458)
++++||++||..+ ...++++++||+.+++|+.++++|.+|..+ ++++++++||++||. .
T Consensus 158 ~~~~iyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~i~v~GG~~~~~~~ 221 (301)
T 2vpj_A 158 ASGVIYCLGGYDG--LNILNSVEKYDPHTGHWTNVTPMATKRSGA--------------GVALLNDHIYVVGGFDGTAHL 221 (301)
T ss_dssp ETTEEEEECCBCS--SCBCCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEECCBCSSSBC
T ss_pred ECCEEEEECCCCC--CcccceEEEEeCCCCcEEeCCCCCcccccc--------------eEEEECCEEEEEeCCCCCccc
Confidence 9999999999873 346788999999999999999999999988 889999999999986 3
Q ss_pred CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCcee
Q 012701 371 MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANFV 450 (458)
Q Consensus 371 ~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~~ 450 (458)
+++++||+.+++|+.++.+|.++. ++++++++++|||+||.... ....++..|+++ +++|+.++.+|.+|+.
T Consensus 222 ~~v~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~--~~~W~~~~~~~~~r~~ 293 (301)
T 2vpj_A 222 SSVEAYNIRTDSWTTVTSMTTPRC-----YVGATVLRGRLYAIAGYDGN-SLLSSIECYDPI--IDSWEVVTSMGTQRCD 293 (301)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBEEEEEEEETT--TTEEEEEEEEEEEEES
T ss_pred ceEEEEeCCCCcEEECCCCCCccc-----ceeEEEECCEEEEEcCcCCC-cccccEEEEcCC--CCeEEEcCCCCccccc
Confidence 689999999999999999988774 46677889999999997543 234566666664 4899999999999999
Q ss_pred eeEEEee
Q 012701 451 YNCAVMG 457 (458)
Q Consensus 451 ~~~~v~g 457 (458)
|+|+++.
T Consensus 294 ~~~~~~~ 300 (301)
T 2vpj_A 294 AGVCVLR 300 (301)
T ss_dssp CEEEEEE
T ss_pred ceEEEeC
Confidence 9999874
No 5
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=9e-41 Score=326.76 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=219.4
Q ss_pred ceEEEEecCCCcEEeCCCCCC--CccccccCceEEEeCCEEEEEcCCC-----CCcCccceEEEEEcCCCceeeCCCCCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTS--NECFMCSDKESLAVGTELLVFGREL-----TAHHISHVIYRYSILTNSWSSGMRMNA 238 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~--~~~~~~~~~~~~~~~~~lyv~GG~~-----~~~~~~~~v~~yd~~t~~W~~~~~~p~ 238 (458)
.++++|||.+++|.. +++|. +|. .+++++++++|||+||.. ......+++++||+.+++|+.+++||.
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKN----HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSS----EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS
T ss_pred CceEEECCCCCeEec-CCCCCCCCcc----ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc
Confidence 468899999999987 66654 453 344577899999999952 223345679999999999999999999
Q ss_pred CCceeeEEEeCCEEEEEeccCC--CCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccce
Q 012701 239 PRCLFGSASLGEIAILAGGSDL--EGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTC 316 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~ 316 (458)
+|..|+++.++++|||+||.+. ....++++++||+.+++|+.++++|.+|..|++++++++|||+||.. .....+++
T Consensus 88 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~ 166 (315)
T 4asc_A 88 PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKG-SDRKCLNK 166 (315)
T ss_dssp CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC-TTSCBCCC
T ss_pred chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCC-CCCcccce
Confidence 9999999999999999999752 34568999999999999999999999999999999999999999985 23457889
Q ss_pred EEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeEEEEeCCCCceEEeccCCC
Q 012701 317 GEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEVRKYDKERRLWFTIGRLPE 391 (458)
Q Consensus 317 v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v~~yd~~~~~W~~v~~lp~ 391 (458)
+++||+.+++|+.+++||.+|..+ ++++++++||++||.. +++++||+.+++|+.++++|.
T Consensus 167 ~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 167 MCVYDPKKFEWKELAPMQTARSLF--------------GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSC--------------EEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred EEEEeCCCCeEEECCCCCCchhce--------------EEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 999999999999999999999998 8899999999999864 479999999999999999998
Q ss_pred ccCCCCcccEEEEEeCCEEEEEcCCCCC----CC----CeeeEEEeecCCCCCCceEeeccCCCceeeeEEEee
Q 012701 392 RANSMNGWGLAFRACGDRLIVIGGPKAS----GE----GFIELNSWVPSEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~lyv~GG~~~~----~~----~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
++. ++++++++++|||+||.... +. ...++.+|++ .+++|+.+ +|..|+.|++++++
T Consensus 233 ~r~-----~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~--~~~~r~~~~~~~~~ 297 (315)
T 4asc_A 233 ERS-----SLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGV--LREIAYAAGATFLP 297 (315)
T ss_dssp CCB-----SCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEE--ESCSSCCSSCEEEE
T ss_pred ccc-----ceeEEEECCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhh--ccCCcCccceEEeC
Confidence 875 46777899999999997532 11 1234445555 56999999 56667778888765
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=1.9e-40 Score=324.97 Aligned_cols=272 Identities=15% Similarity=0.287 Sum_probs=225.2
Q ss_pred cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCC--CCccccccCceEEEeCCEEEEEcCCCCC-----c
Q 012701 142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMT--SNECFMCSDKESLAVGTELLVFGRELTA-----H 214 (458)
Q Consensus 142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p--~~~~~~~~~~~~~~~~~~lyv~GG~~~~-----~ 214 (458)
.+.+|++||. .+++|||.+++|... +++ .+|. .+++++++++|||+||.... .
T Consensus 15 ~~~i~~~GG~---------------~~~~yd~~~~~W~~~-~~~~~~~r~----~~~~~~~~~~lyv~GG~~~~~~~~~~ 74 (318)
T 2woz_A 15 KDLILLVNDT---------------AAVAYDPMENECYLT-ALAEQIPRN----HSSIVTQQNQVYVVGGLYVDEENKDQ 74 (318)
T ss_dssp EEEEEEECSS---------------EEEEEETTTTEEEEE-EECTTSCSS----EEEEECSSSCEEEEESSCC-------
T ss_pred cchhhhcccc---------------ceEEECCCCCceecc-cCCccCCcc----ceEEEEECCEEEEECCcccCccccCC
Confidence 4567777762 357899999999984 444 4453 34457789999999995311 1
Q ss_pred CccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCC-CCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE
Q 012701 215 HISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDL-EGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293 (458)
Q Consensus 215 ~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 293 (458)
...+.+++||+.+++|+.+++||.+|..|++++++++|||+||.+. ....++++++||+.+++|+.++++|.+|..|++
T Consensus 75 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 154 (318)
T 2woz_A 75 PLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV 154 (318)
T ss_dssp CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEE
T ss_pred CccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEE
Confidence 2345699999999999999999999999999999999999999863 345678999999999999999999999999999
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--- 370 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--- 370 (458)
++++++|||+||... ....++++++||+.+++|+.++++|.+|..+ ++++++++||++||..
T Consensus 155 ~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~iyv~GG~~~~~ 219 (318)
T 2woz_A 155 ISHNGMIYCLGGKTD-DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMF--------------GVAIHKGKIVIAGGVTEDG 219 (318)
T ss_dssp EEETTEEEEECCEES-SSCBCCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEEEEEETTE
T ss_pred EEECCEEEEEcCCCC-CCCccceEEEEcCCCCEEEECCCCCCCcccc--------------eEEEECCEEEEEcCcCCCC
Confidence 999999999999862 3456788999999999999999999999988 8899999999999853
Q ss_pred --CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC--------CCeeeEEEeecCCCCCCceE
Q 012701 371 --MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG--------EGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 371 --~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~--------~~~~~~~~~~~~~~~~~W~~ 440 (458)
+++++||+.+++|+.++++|.++. ++++++++++|||+||..... ....++.+|++ .+++|+.
T Consensus 220 ~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~ 292 (318)
T 2woz_A 220 LSASVEAFDLKTNKWEVMTEFPQERS-----SISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAG 292 (318)
T ss_dssp EEEEEEEEETTTCCEEECCCCSSCCB-----SCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEE
T ss_pred ccceEEEEECCCCeEEECCCCCCccc-----ceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehh
Confidence 579999999999999999998774 467788999999999976431 12345556665 5599999
Q ss_pred eeccCCCceeeeEEEee
Q 012701 441 LARKQSANFVYNCAVMG 457 (458)
Q Consensus 441 l~~~p~~~~~~~~~v~g 457 (458)
+ +|..++.|++++++
T Consensus 293 ~--~~~~r~~~~~~~~~ 307 (318)
T 2woz_A 293 M--LKEIRYASGASCLA 307 (318)
T ss_dssp E--ESCCGGGTTCEEEE
T ss_pred h--cccccccccceeeC
Confidence 9 78889999988875
No 7
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.6e-38 Score=316.08 Aligned_cols=268 Identities=18% Similarity=0.196 Sum_probs=214.0
Q ss_pred hccCcEEEeecccCceeeEEEEEeccceEEEEecC--CCcEEeCCCCC-CCccccccCceEEEeCCEEEEEcCC-C---C
Q 012701 140 IRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPI--RRRWMHLPRMT-SNECFMCSDKESLAVGTELLVFGRE-L---T 212 (458)
Q Consensus 140 v~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~--~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~-~---~ 212 (458)
+.++.+|++||..+ +++++||+. +++|..+++|| .+|.. +++++++++|||+||. . .
T Consensus 17 ~~~~~iyv~GG~~~------------~~~~~~d~~~~~~~W~~~~~~p~~~R~~----~~~~~~~~~lyv~GG~~~~~~~ 80 (357)
T 2uvk_A 17 IDNDTVYIGLGSAG------------TAWYKLDTQAKDKKWTALAAFPGGPRDQ----ATSAFIDGNLYVFGGIGKNSEG 80 (357)
T ss_dssp EETTEEEEECGGGT------------TCEEEEETTSSSCCEEECCCCTTCCCBS----CEEEEETTEEEEECCEEECTTS
T ss_pred EECCEEEEEeCcCC------------CeEEEEccccCCCCeeECCCCCCCcCcc----ceEEEECCEEEEEcCCCCCCCc
Confidence 44899999999764 257889998 48999999999 77754 4568899999999998 2 2
Q ss_pred CcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEEeCCEEEEEeccCCCC-----------------------------
Q 012701 213 AHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSASLGEIAILAGGSDLEG----------------------------- 262 (458)
Q Consensus 213 ~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~----------------------------- 262 (458)
.....+++++||+.+++|+++++|+ .+|..|++++++++|||+||.+...
T Consensus 81 ~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (357)
T 2uvk_A 81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKK 160 (357)
T ss_dssp CEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSC
T ss_pred cceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccc
Confidence 2346788999999999999999998 9999999999999999999986431
Q ss_pred ----CccCeEEEEeCCCCcEEEcCCCCCCCcc-eeEEEECCEEEEEccccCCCCcccceEEEEEC--CCCceEEcCCCCC
Q 012701 263 ----NILSSAEMYNSETQTWKVLPSMKNPRKM-CSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDL--ETETWTEIPNMSP 335 (458)
Q Consensus 263 ----~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~--~~~~W~~i~~~p~ 335 (458)
..++++++||+.+++|+.+++||.+|.. +++++++++|||+||... .....+.+++||+ .+++|+.++++|.
T Consensus 161 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~~d~d~~~~~W~~~~~~~~ 239 (357)
T 2uvk_A 161 AEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAK-PGLRTDAVFELDFTGNNLKWNKLAPVSS 239 (357)
T ss_dssp GGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEE-TTEECCCEEEEECC---CEEEECCCSST
T ss_pred ccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecC-CCcccCceEEEEecCCCCcEEecCCCCC
Confidence 2468999999999999999999987655 889999999999999863 2345678999987 8999999998876
Q ss_pred CCC--CCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----------------------CeEEEEeCCCCceEEeccCCC
Q 012701 336 ARG--GAARGTEMPASAEAPPLVAVVNNELYAADYAD----------------------MEVRKYDKERRLWFTIGRLPE 391 (458)
Q Consensus 336 ~r~--~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----------------------~~v~~yd~~~~~W~~v~~lp~ 391 (458)
+|. ++ ++++++++||++||.. .++++||+.+++|+.++.+|.
T Consensus 240 ~~~~~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 305 (357)
T 2uvk_A 240 PDGVAGG--------------FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ 305 (357)
T ss_dssp TTCCBSC--------------EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS
T ss_pred Ccccccc--------------eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC
Confidence 654 44 6889999999999842 368999999999999999998
Q ss_pred ccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccC
Q 012701 392 RANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQ 445 (458)
Q Consensus 392 ~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p 445 (458)
++. ++++++++++||||||.+..+....++..++++ +.+|.++.+.|
T Consensus 306 ~r~-----~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~--~~~~~~~~~~~ 352 (357)
T 2uvk_A 306 GRA-----YGVSLPWNNSLLIIGGETAGGKAVTDSVLITVK--DNKVTVQNLEH 352 (357)
T ss_dssp CCB-----SSEEEEETTEEEEEEEECGGGCEEEEEEEEEC---CCSCEEEC---
T ss_pred Ccc-----cceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEc--CcEeEeeeccc
Confidence 875 356678999999999987655445666666665 49999987766
No 8
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=4e-37 Score=299.97 Aligned_cols=236 Identities=21% Similarity=0.321 Sum_probs=205.3
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccC---CCCCccCeEEEEe
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSD---LEGNILSSAEMYN 272 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---~~~~~~~~v~~yd 272 (458)
.++.+++.||+|||. .....+++++||+.+++|+.++++|.+|..|+++.++++|||+||.. .....++++++||
T Consensus 19 ~~~~~~~~i~v~GG~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp --CCCCCCEEEECCB--SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEE
T ss_pred cccCCCCEEEEEeCc--CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEEC
Confidence 347789999999997 23467889999999999999999999999999999999999999983 2234578999999
Q ss_pred CCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 273 SETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 273 ~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
+.+++|+.+++||.+|..|++++++++|||+||..+ ...++++++||+.+++|+.++++|.+|..+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~------------ 162 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG--CIHHNSVERYEPERDEWHLVAPMLTRRIGV------------ 162 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEET--TEECCCEEEEETTTTEEEECCCCSSCCBSC------------
T ss_pred CCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCC--CcccccEEEECCCCCeEeECCCCCccccce------------
Confidence 999999999999999999999999999999999873 346788999999999999999999999998
Q ss_pred CCEEEEECCEEEEEEcCC-----CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEE
Q 012701 353 PPLVAVVNNELYAADYAD-----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELN 427 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~-----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~ 427 (458)
++++++++||++||.. +++++||+.+++|+.++.+|.++. ++++++++++|||+||.... ....++.
T Consensus 163 --~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~iyv~GG~~~~-~~~~~v~ 234 (308)
T 1zgk_A 163 --GVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS-----GAGVCVLHNCIYAAGGYDGQ-DQLNSVE 234 (308)
T ss_dssp --EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB-----SCEEEEETTEEEEECCBCSS-SBCCCEE
T ss_pred --EEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc-----cceEEEECCEEEEEeCCCCC-CccceEE
Confidence 8899999999999854 689999999999999999998774 46677889999999998643 2345566
Q ss_pred EeecCCCCCCceEeeccCCCceeeeEEEee
Q 012701 428 SWVPSEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 428 ~~~~~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
+|++. +++|+.++.+|.+++.|++++++
T Consensus 235 ~yd~~--~~~W~~~~~~p~~r~~~~~~~~~ 262 (308)
T 1zgk_A 235 RYDVE--TETWTFVAPMKHRRSALGITVHQ 262 (308)
T ss_dssp EEETT--TTEEEECCCCSSCCBSCEEEEET
T ss_pred EEeCC--CCcEEECCCCCCCccceEEEEEC
Confidence 66664 58999999999999999998864
No 9
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=303.25 Aligned_cols=244 Identities=17% Similarity=0.289 Sum_probs=208.7
Q ss_pred hccCcEEEeeccc----CceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCC--CC
Q 012701 140 IRSGELYRLRRLN----GVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGREL--TA 213 (458)
Q Consensus 140 v~s~~~y~~gg~~----~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~--~~ 213 (458)
+.++.+|++||.. ..... ....++.||+.+++|..++++|.+|.. +++++++++|||+||.. ..
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~------~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~lyv~GG~~~~~~ 112 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDP------MSAYFLQFDHLDSEWLGMPPLPSPRCL----FGLGEALNSIYVVGGREIKDG 112 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSC------EEEEEEEEETTTTEEEECCCBSSCEES----CEEEEETTEEEEECCEESSTT
T ss_pred EECCEEEEEcCcccCCCCCccc------cccceEEecCCCCeEEECCCCCcchhc----eeEEEECCEEEEEeCCcCCCC
Confidence 4588999999962 11110 124589999999999999999998864 44688899999999964 23
Q ss_pred cCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE
Q 012701 214 HHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293 (458)
Q Consensus 214 ~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 293 (458)
....+++++||+.+++|+.++++|.+|..|+++.++++|||+||.+.....++++++||+.+++|+.+++||.+|..|++
T Consensus 113 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 192 (315)
T 4asc_A 113 ERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA 192 (315)
T ss_dssp CCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred CcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEE
Confidence 45778999999999999999999999999999999999999999965556789999999999999999999999999999
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC---
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD--- 370 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--- 370 (458)
++++++|||+||... ...++++++||+.+++|+.++++|.+|..+ ++++++++||++||..
T Consensus 193 ~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~l~v~GG~~~~~ 256 (315)
T 4asc_A 193 TVHDGRIIVAAGVTD--TGLTSSAEVYSITDNKWAPFEAFPQERSSL--------------SLVSLVGTLYAIGGFATLE 256 (315)
T ss_dssp EEETTEEEEEEEECS--SSEEEEEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEEEEEEEEE
T ss_pred EEECCEEEEEeccCC--CCccceEEEEECCCCeEEECCCCCCcccce--------------eEEEECCEEEEECCccccC
Confidence 999999999999873 346789999999999999999999999998 8899999999999852
Q ss_pred -----------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 371 -----------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 371 -----------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
+++++||+++++|+.+. |.++. ++++++++++||++...
T Consensus 257 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~r~-----~~~~~~~~~~l~v~~~~ 306 (315)
T 4asc_A 257 TESGELVPTELNDIWRYNEEEKKWEGVL--REIAY-----AAGATFLPVRLNVLRLT 306 (315)
T ss_dssp CTTSCEEEEEEEEEEEEETTTTEEEEEE--SCSSC-----CSSCEEEEEEECGGGSE
T ss_pred cCCccccccccCcEEEecCCCChhhhhc--cCCcC-----ccceEEeCCEEEEEEeh
Confidence 46899999999999994 44443 34567789999999753
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=296.10 Aligned_cols=237 Identities=23% Similarity=0.400 Sum_probs=206.0
Q ss_pred hccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccce
Q 012701 140 IRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHV 219 (458)
Q Consensus 140 v~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 219 (458)
+.++.+|++||..+.. ..++++.||+.+++|..++++|.+|.. +++++++++|||+||.... ...++
T Consensus 59 ~~~~~lyv~GG~~~~~--------~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~-~~~~~ 125 (302)
T 2xn4_A 59 YMAGLVFAVGGFNGSL--------RVRTVDSYDPVKDQWTSVANMRDRRST----LGAAVLNGLLYAVGGFDGS-TGLSS 125 (302)
T ss_dssp EETTEEEEESCBCSSS--------BCCCEEEEETTTTEEEEECCCSSCCBS----CEEEEETTEEEEEEEECSS-CEEEE
T ss_pred EECCEEEEEeCcCCCc--------cccceEEECCCCCceeeCCCCCccccc----eEEEEECCEEEEEcCCCCC-ccCce
Confidence 4588999999987543 256899999999999999999998864 4457889999999998543 35688
Q ss_pred EEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCC-CccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC
Q 012701 220 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEG-NILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG 298 (458)
Q Consensus 220 v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (458)
+++||+.+++|+.+++||.+|..|+++.++++||++||.+... ..++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 126 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 205 (302)
T 2xn4_A 126 VEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN 205 (302)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred EEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECC
Confidence 9999999999999999999999999999999999999987653 357899999999999999999999999999999999
Q ss_pred EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----CeE
Q 012701 299 KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-----MEV 373 (458)
Q Consensus 299 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-----~~v 373 (458)
+|||+||..+ ....+++++||+.+++|+.++++|.+|..+ ++++++++||++||.. +++
T Consensus 206 ~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--------------~~~~~~~~i~v~GG~~~~~~~~~v 269 (302)
T 2xn4_A 206 LLYAVGGHDG--PLVRKSVEVYDPTTNAWRQVADMNMCRRNA--------------GVCAVNGLLYVVGGDDGSCNLASV 269 (302)
T ss_dssp EEEEECCBSS--SSBCCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEETTEEEEECCBCSSSBCCCE
T ss_pred EEEEECCCCC--CcccceEEEEeCCCCCEeeCCCCCCccccC--------------eEEEECCEEEEECCcCCCcccccE
Confidence 9999999873 345678999999999999999999999888 8899999999999854 579
Q ss_pred EEEeCCCCceEEec-cCCCccCCCCcccEEEEEeCCEE
Q 012701 374 RKYDKERRLWFTIG-RLPERANSMNGWGLAFRACGDRL 410 (458)
Q Consensus 374 ~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~l 410 (458)
++||+.+++|+.++ .||.++. ++++++++++|
T Consensus 270 ~~yd~~~~~W~~~~~~~~~~r~-----~~~~~~~~~~i 302 (302)
T 2xn4_A 270 EYYNPTTDKWTVVSSCMSTGRS-----YAGVTVIDKRL 302 (302)
T ss_dssp EEEETTTTEEEECSSCCSSCCB-----SCEEEEEEC--
T ss_pred EEEcCCCCeEEECCcccCcccc-----cceEEEecccC
Confidence 99999999999997 8888774 35667777764
No 11
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-36 Score=301.35 Aligned_cols=250 Identities=15% Similarity=0.125 Sum_probs=201.8
Q ss_pred eCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcC--CCceeeCCCCC-CCCceeeEEEeCCEEEEEe
Q 012701 180 HLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSIL--TNSWSSGMRMN-APRCLFGSASLGEIAILAG 256 (458)
Q Consensus 180 ~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~p-~~r~~~~~~~~~~~lyv~G 256 (458)
.+++||.+|.. +.+++++++|||+||.. .+++++||+. +++|+.+++|| .+|..|++++++++|||+|
T Consensus 2 ~l~~lP~~r~~----~~~~~~~~~iyv~GG~~-----~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~G 72 (357)
T 2uvk_A 2 VLPETPVPFKS----GTGAIDNDTVYIGLGSA-----GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFG 72 (357)
T ss_dssp CSCCCSSCCCS----CEEEEETTEEEEECGGG-----TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEEC
T ss_pred CCCCCCccccc----eEEEEECCEEEEEeCcC-----CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEc
Confidence 57889988854 34567799999999973 3589999998 49999999999 8999999999999999999
Q ss_pred cc-C---CCCCccCeEEEEeCCCCcEEEcCCCC-CCCcceeEEEECCEEEEEccccCCC---------------------
Q 012701 257 GS-D---LEGNILSSAEMYNSETQTWKVLPSMK-NPRKMCSGVFMDGKFYVIGGIGGSD--------------------- 310 (458)
Q Consensus 257 G~-~---~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~g~lyv~GG~~~~~--------------------- 310 (458)
|. + .....++++++||+.+++|+.+++|+ .+|..|++++++++|||+||.....
T Consensus 73 G~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (357)
T 2uvk_A 73 GIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKI 152 (357)
T ss_dssp CEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhh
Confidence 98 2 22346789999999999999999998 8999999999999999999975211
Q ss_pred -----------CcccceEEEEECCCCceEEcCCCCCCCCC-CCCCCCCCCCcCCCCEEEEECCEEEEEEcC------CCe
Q 012701 311 -----------SKVLTCGEEYDLETETWTEIPNMSPARGG-AARGTEMPASAEAPPLVAVVNNELYAADYA------DME 372 (458)
Q Consensus 311 -----------~~~~~~v~~yd~~~~~W~~i~~~p~~r~~-~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~------~~~ 372 (458)
...++++++||+.+++|+.++++|.++.. + ++++++++||++||. ..+
T Consensus 153 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~--------------~~~~~~~~iyv~GG~~~~~~~~~~ 218 (357)
T 2uvk_A 153 NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGA--------------AVVNKGDKTWLINGEAKPGLRTDA 218 (357)
T ss_dssp HHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSC--------------EEEEETTEEEEECCEEETTEECCC
T ss_pred hhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccc--------------cEEEECCEEEEEeeecCCCcccCc
Confidence 02357999999999999999999876544 6 788999999999984 468
Q ss_pred EEEEeC--CCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC----------------CCeeeEEEeecCCC
Q 012701 373 VRKYDK--ERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG----------------EGFIELNSWVPSEG 434 (458)
Q Consensus 373 v~~yd~--~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~----------------~~~~~~~~~~~~~~ 434 (458)
+++||+ .+++|+.++.+|.++.. +++++++++++|||+||....+ .....+.+|+++
T Consensus 219 v~~~d~d~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~-- 293 (357)
T 2uvk_A 219 VFELDFTGNNLKWNKLAPVSSPDGV---AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH-- 293 (357)
T ss_dssp EEEEECC---CEEEECCCSSTTTCC---BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred eEEEEecCCCCcEEecCCCCCCccc---ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--
Confidence 999986 89999999998766542 3567888999999999964321 112345566664
Q ss_pred CCCceEeeccCCCceeeeEEEee
Q 012701 435 PPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 435 ~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
+++|+.++.+|.+|+.|++++++
T Consensus 294 ~~~W~~~~~~p~~r~~~~~~~~~ 316 (357)
T 2uvk_A 294 NGKWDKSGELSQGRAYGVSLPWN 316 (357)
T ss_dssp ---CEEEEECSSCCBSSEEEEET
T ss_pred CCceeeCCCCCCCcccceeEEeC
Confidence 59999999999999999998764
No 12
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=294.11 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=201.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
.+.||+|||... .+++++||+.+++|+.++++|.+|..|+++.++++|||+||.+ ...++++++||+.+++|+.
T Consensus 11 ~~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~ 84 (306)
T 3ii7_A 11 HDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYS 84 (306)
T ss_dssp CCEEEEEECCSS----TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEE
T ss_pred cceEEEEeCCCC----CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEE
Confidence 578999999753 7889999999999999999999999999999999999999988 4568999999999999999
Q ss_pred cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 360 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (458)
++++|.+|..|++++++++|||+||... ....++++++||+.+++|+.++++|.+|..+ ++++++
T Consensus 85 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~--------------~~~~~~ 149 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAAEGKIYTSGGSEV-GNSALYLFECYDTRTESWHTKPSMLTQRCSH--------------GMVEAN 149 (306)
T ss_dssp EECCSSCCBSCEEEEETTEEEEECCBBT-TBSCCCCEEEEETTTTEEEEECCCSSCCBSC--------------EEEEET
T ss_pred CCCCCccccceeEEEECCEEEEECCCCC-CCcEeeeEEEEeCCCCceEeCCCCcCCccee--------------EEEEEC
Confidence 9999999999999999999999999862 3456788999999999999999999999998 889999
Q ss_pred CEEEEEEcC---------CCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 361 NELYAADYA---------DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 361 ~~lyv~gg~---------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
++||++||. .+++++||+.+++|+.++++|.++. ++++++++++|||+||.... ....++.+|++
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~ 223 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK-----NHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDI 223 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCEETT-EEBCCEEEEET
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh-----cceEEEECCEEEEEeCCCCC-CCCceEEEeeC
Confidence 999999983 5779999999999999999998774 46777889999999997543 23345666666
Q ss_pred CCCCCCceEeeccCCCceeeeEEEee
Q 012701 432 SEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 432 ~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
.+++|+.++.+|.++..|++++++
T Consensus 224 --~~~~W~~~~~~p~~r~~~~~~~~~ 247 (306)
T 3ii7_A 224 --KLNEWKMVSPMPWKGVTVKCAAVG 247 (306)
T ss_dssp --TTTEEEECCCCSCCBSCCEEEEET
T ss_pred --CCCcEEECCCCCCCccceeEEEEC
Confidence 458999999999999999998875
No 13
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=7.2e-37 Score=299.45 Aligned_cols=247 Identities=19% Similarity=0.296 Sum_probs=208.3
Q ss_pred hccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCC-CcCccc
Q 012701 140 IRSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELT-AHHISH 218 (458)
Q Consensus 140 v~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~-~~~~~~ 218 (458)
+.++.+|++||........ .......++.||+.+++|..++++|.+|.. +++++++++|||+||... .....+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~--~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENK--DQPLQSYFFQLDNVSSEWVGLPPLPSARCL----FGLGEVDDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp CSSSCEEEEESSCC---------CCCBEEEEEETTTTEEEECSCBSSCBCS----CEEEEETTEEEEEEEEBTTTCCEEE
T ss_pred EECCEEEEECCcccCcccc--CCCccccEEEEeCCCCcEEECCCCCccccc----cceEEECCEEEEEcCccCCCCcccc
Confidence 5588999999953211000 000123488999999999999999999864 446888999999999753 334678
Q ss_pred eEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECC
Q 012701 219 VIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDG 298 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g 298 (458)
++++||+.+++|+.++++|.+|..|++++++++|||+||.+.....++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 207 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG 207 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred eEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECC
Confidence 99999999999999999999999999999999999999986555678999999999999999999999999999999999
Q ss_pred EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC--------
Q 012701 299 KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD-------- 370 (458)
Q Consensus 299 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~-------- 370 (458)
+|||+||... ....+++++||+.+++|+.++++|.+|..+ ++++++++||++||..
T Consensus 208 ~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------------~~~~~~~~i~v~GG~~~~~~~~~~ 271 (318)
T 2woz_A 208 KIVIAGGVTE--DGLSASVEAFDLKTNKWEVMTEFPQERSSI--------------SLVSLAGSLYAIGGFAMIQLESKE 271 (318)
T ss_dssp EEEEEEEEET--TEEEEEEEEEETTTCCEEECCCCSSCCBSC--------------EEEEETTEEEEECCBCCBC----C
T ss_pred EEEEEcCcCC--CCccceEEEEECCCCeEEECCCCCCcccce--------------EEEEECCEEEEECCeeccCCCCce
Confidence 9999999873 346788999999999999999999999988 8899999999999852
Q ss_pred ------CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 371 ------MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 371 ------~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
+++++||+.+++|+.+ +|.++. ++++++++++|||+..
T Consensus 272 ~~~~~~~~v~~yd~~~~~W~~~--~~~~r~-----~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 272 FAPTEVNDIWKYEDDKKEWAGM--LKEIRY-----ASGASCLATRLNLFKL 315 (318)
T ss_dssp CBCCBCCCEEEEETTTTEEEEE--ESCCGG-----GTTCEEEEEEEEGGGC
T ss_pred eccceeeeEEEEeCCCCEehhh--cccccc-----cccceeeCCEEEEEEe
Confidence 5799999999999999 666553 3556778999999864
No 14
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.5e-36 Score=288.80 Aligned_cols=235 Identities=23% Similarity=0.380 Sum_probs=204.4
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
..+++.||++||........+++++||+.+++|+.++++|.+|..|+++.++++||++||.++. ..++++++||+.+++
T Consensus 11 ~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 11 LGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTADE 89 (301)
T ss_dssp --CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCCT
T ss_pred ccCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCCC
Confidence 3468899999994333346788999999999999999999999999999999999999998754 467899999999999
Q ss_pred ---EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 278 ---WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 278 ---W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
|+.++++|.+|..|++++++++|||+||..+ ...++++++||+.+++|+.++++|.+|..+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-------------- 153 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDG--SRRHTSMERYDPNIDQWSMLGDMQTAREGA-------------- 153 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEETTEEEEECCBCS--SCBCCEEEEEETTTTEEEEEEECSSCCBSC--------------
T ss_pred CCeeEECCCCCCCccceeEEEECCEEEEEcccCC--CcccceEEEEcCCCCeEEECCCCCCCcccc--------------
Confidence 9999999999999999999999999999873 345789999999999999999999999988
Q ss_pred EEEEECCEEEEEEcCC-----CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEe
Q 012701 355 LVAVVNNELYAADYAD-----MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~-----~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~ 429 (458)
++++++++||++||.. +++++||+.+++|+.++++|.++. ++++++++++|||+||..... ...++.+|
T Consensus 154 ~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~~~~~~~~~i~v~GG~~~~~-~~~~v~~y 227 (301)
T 2vpj_A 154 GLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-----GAGVALLNDHIYVVGGFDGTA-HLSSVEAY 227 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SCEEEEETTEEEEECCBCSSS-BCCCEEEE
T ss_pred eEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-----cceEEEECCEEEEEeCCCCCc-ccceEEEE
Confidence 8899999999999853 689999999999999999988774 467788999999999976442 24566666
Q ss_pred ecCCCCCCceEeeccCCCceeeeEEEee
Q 012701 430 VPSEGPPQWNLLARKQSANFVYNCAVMG 457 (458)
Q Consensus 430 ~~~~~~~~W~~l~~~p~~~~~~~~~v~g 457 (458)
++. +++|+.++.+|.++..|++++++
T Consensus 228 d~~--~~~W~~~~~~p~~r~~~~~~~~~ 253 (301)
T 2vpj_A 228 NIR--TDSWTTVTSMTTPRCYVGATVLR 253 (301)
T ss_dssp ETT--TTEEEEECCCSSCCBSCEEEEET
T ss_pred eCC--CCcEEECCCCCCcccceeEEEEC
Confidence 664 58999999999999999988764
No 15
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.5e-33 Score=300.21 Aligned_cols=245 Identities=14% Similarity=0.161 Sum_probs=201.6
Q ss_pred ccCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCC-C-----CCCCccccccCceEEEe--CCEEEEEcCCCC
Q 012701 141 RSGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLP-R-----MTSNECFMCSDKESLAV--GTELLVFGRELT 212 (458)
Q Consensus 141 ~s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~-~-----~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~ 212 (458)
.++.+|++||..+ . ..++++.||+.+++|..++ + +|.+|.. ++++++ +++|||+||...
T Consensus 396 ~~~~iyv~GG~~~-~--------~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~----hs~~~~~~~~~lyv~GG~~~ 462 (695)
T 2zwa_A 396 AGNDVFYMGGSNP-Y--------RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC----HTFTTISRNNQLLLIGGRKA 462 (695)
T ss_dssp CSSCEEEECCBSS-S--------BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS----CEEEEETTTTEEEEECCBSS
T ss_pred ECCEEEEECCCCC-C--------CcCcEEEEECCCCeEEEeccCCCCCCCCccccc----eEEEEEccCCEEEEEcCCCC
Confidence 6889999999876 2 2568999999999999998 6 6777754 456888 999999999876
Q ss_pred CcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC---CCCCC
Q 012701 213 AHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS---MKNPR 288 (458)
Q Consensus 213 ~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r 288 (458)
.....+++|+||+.+++|+.+++||.+|..|+++++ +++|||+||.+... ++++||+.+++|+.+++ +|.+|
T Consensus 463 ~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r 538 (695)
T 2zwa_A 463 PHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNS 538 (695)
T ss_dssp TTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSC
T ss_pred CCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcc
Confidence 555678999999999999999999999999999997 99999999997653 89999999999999986 89999
Q ss_pred cceeEEEEC---CEEEEEccccCCCCcccceEEEEECCCCc------eEEcCCC-CCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 289 KMCSGVFMD---GKFYVIGGIGGSDSKVLTCGEEYDLETET------WTEIPNM-SPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 289 ~~~~~~~~~---g~lyv~GG~~~~~~~~~~~v~~yd~~~~~------W~~i~~~-p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
..|++++++ ++|||+||........++++++||+.+++ |+.+.++ +.+|.++ ++++
T Consensus 539 ~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~--------------~~~~ 604 (695)
T 2zwa_A 539 LVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS--------------QIKY 604 (695)
T ss_dssp CBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC--------------EEEE
T ss_pred cceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc--------------eEEE
Confidence 999988877 99999999863333577899999999999 8998876 4788888 8888
Q ss_pred EC-CEEEEEEcC--------CCeEEEEeCCCCceEEeccCCCcc---CCCCcccEEEEEeCC-EEEEEcCCC
Q 012701 359 VN-NELYAADYA--------DMEVRKYDKERRLWFTIGRLPERA---NSMNGWGLAFRACGD-RLIVIGGPK 417 (458)
Q Consensus 359 ~~-~~lyv~gg~--------~~~v~~yd~~~~~W~~v~~lp~~~---~~~~~~~~a~~~~~~-~lyv~GG~~ 417 (458)
++ ++||++||. .+++++||+.+++|+.+ .+|... ......+++++++++ +|||+||..
T Consensus 605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~ 675 (695)
T 2zwa_A 605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI-PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675 (695)
T ss_dssp EETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCCHHHHHHSCCCCSSCEEECC---CEEEECCEE
T ss_pred eCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEe-eccccccCCCCccceeeeEEEeCCCEEEEEeCCc
Confidence 88 999999984 36899999999999965 343321 000113455666665 999999953
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=4.6e-32 Score=292.29 Aligned_cols=246 Identities=13% Similarity=0.157 Sum_probs=198.2
Q ss_pred cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC-C-----CCCCCceeeEEEe--
Q 012701 177 RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM-R-----MNAPRCLFGSASL-- 248 (458)
Q Consensus 177 ~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~-----~p~~r~~~~~~~~-- 248 (458)
+|...+..|..+.. +++++++.|||+||... ...+++++||+.+++|+.++ + ||.+|..|+++++
T Consensus 378 ~~~~~~~~p~rr~g-----~~~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~ 450 (695)
T 2zwa_A 378 QLLECECPINRKFG-----DVDVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR 450 (695)
T ss_dssp EEEECCCTTCCBSC-----EEEECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT
T ss_pred eEeccCCCCCCcee-----EEEEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc
Confidence 45555555554422 33558999999999865 46788999999999999987 5 7899999999999
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
+++|||+||.+.....++++++||+.+++|+.+++||.+|..|+++++ +++|||+||..... ++++||+.+++|
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-----~v~~yd~~t~~W 525 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-----AMLLYNVTEEIF 525 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-----SEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-----CEEEEECCCCce
Confidence 999999999987665789999999999999999999999999999996 99999999987432 899999999999
Q ss_pred EEcCC---CCCCCCCCCCCCCCCCCcCCCCEEEEEC---CEEEEEEcC-------CCeEEEEeCCCCc------eEEecc
Q 012701 328 TEIPN---MSPARGGAARGTEMPASAEAPPLVAVVN---NELYAADYA-------DMEVRKYDKERRL------WFTIGR 388 (458)
Q Consensus 328 ~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~~---~~lyv~gg~-------~~~v~~yd~~~~~------W~~v~~ 388 (458)
+.+++ +|.+|.++ ++++++ ++||++||. .+++++||+.+++ |+.+..
T Consensus 526 ~~~~~~g~~p~~r~~~--------------~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVS--------------AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ 591 (695)
T ss_dssp EECCCSSGGGGSCCBS--------------CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred EEccCCCCCCCcccce--------------eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence 99986 88899888 667766 899999986 2689999999999 899987
Q ss_pred CC-CccCCCCcccEEEEEeC-CEEEEEcCCCCCCC--CeeeEEEeecCCCCCCceEeeccCC--------CceeeeEEEe
Q 012701 389 LP-ERANSMNGWGLAFRACG-DRLIVIGGPKASGE--GFIELNSWVPSEGPPQWNLLARKQS--------ANFVYNCAVM 456 (458)
Q Consensus 389 lp-~~~~~~~~~~~a~~~~~-~~lyv~GG~~~~~~--~~~~~~~~~~~~~~~~W~~l~~~p~--------~~~~~~~~v~ 456 (458)
+| .++ +++++++++ ++|||+||...... ...++.+|++.. ++|+.+. +|. .+..|+++++
T Consensus 592 ~p~~~R-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t--~~W~~~~-~p~~~~~~~~p~~~gh~~~~~ 663 (695)
T 2zwa_A 592 HPLFQR-----YGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS--ETLTSIP-ISRRIWEDHSLMLAGFSLVST 663 (695)
T ss_dssp CGGGCC-----BSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT--TEEEECC-CCHHHHHHSCCCCSSCEEECC
T ss_pred CCCCCc-----ccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC--CeEEEee-ccccccCCCCccceeeeEEEe
Confidence 64 444 346677788 99999999764432 345667777654 8999653 221 3445666654
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.97 E-value=1e-31 Score=288.43 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=213.7
Q ss_pred cCcEEEeecccCceeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEE
Q 012701 142 SGELYRLRRLNGVIEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIY 221 (458)
Q Consensus 142 s~~~y~~gg~~~~~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 221 (458)
++++|++||.....-.- .......++.||+.+++|..++.++.++..+++ ..++..+++||++||... .+++
T Consensus 197 ~g~l~v~GG~~~~~~~~--~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~lyv~GG~~~-----~~v~ 268 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGG--SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDA-----KKTS 268 (656)
T ss_dssp TTEEEEEEECCCTTTCS--CCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSST-----TCEE
T ss_pred CCEEEEEeccccccccc--CCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc-cccCCCCCCEEEeCCCCC-----CceE
Confidence 88999999875421000 000123678999999999999999888766552 123346899999999742 3799
Q ss_pred EEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC-----CCCCCCcceeEEE
Q 012701 222 RYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP-----SMKNPRKMCSGVF 295 (458)
Q Consensus 222 ~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-----~~p~~r~~~~~~~ 295 (458)
+||+.+++|+++++|+.+|..|+++++ +++|||+||.......++++++||+.+++|+.++ +|+..+.. +++.
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~ 347 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYR 347 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGT
T ss_pred EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceee
Confidence 999999999999999999999999999 9999999995433456889999999999999974 45555543 4556
Q ss_pred ECCEEEEEccccCCC--CcccceEEEEECCCCceEEcCC-CCC------CCCCCCCCCCCCCCcCCCCEEEE---ECCEE
Q 012701 296 MDGKFYVIGGIGGSD--SKVLTCGEEYDLETETWTEIPN-MSP------ARGGAARGTEMPASAEAPPLVAV---VNNEL 363 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~--~~~~~~v~~yd~~~~~W~~i~~-~p~------~r~~~~~~~~~~~~~~~~~~~~~---~~~~l 363 (458)
.++++|++||.++.. ....+.++.||+.++.|..... .+. .+... ..+. .+++|
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~--------------~av~~~~~~~~i 413 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG--------------NAVMYDAVKGKI 413 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC--------------EEEEEETTTTEE
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC--------------ceEeccCCCCeE
Confidence 799999999986321 1235789999999999875432 111 11122 2332 48999
Q ss_pred EEEEcCC--------C---eEEEEeCCCCceEEec--cCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCC-----CCee
Q 012701 364 YAADYAD--------M---EVRKYDKERRLWFTIG--RLPERANSMNGWGLAFRAC-GDRLIVIGGPKASG-----EGFI 424 (458)
Q Consensus 364 yv~gg~~--------~---~v~~yd~~~~~W~~v~--~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~-----~~~~ 424 (458)
|++||.. + .+++||+.+++|..+. .||.++. .++++++ +++|||+||..... ....
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~-----~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~ 488 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART-----FHTSVVLPDGSTFITGGQRRGIPFEDSTPVF 488 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB-----SCEEEECTTSCEEEECCBSBCCTTCCCSBCC
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc-----cCCeEECCCCCEEEECCcccCcCcCCCCccc
Confidence 9999853 2 7899999999999986 8888775 2444555 99999999975321 2345
Q ss_pred eEEEeecCCCCCCceEeeccCCCceeeeEEEe
Q 012701 425 ELNSWVPSEGPPQWNLLARKQSANFVYNCAVM 456 (458)
Q Consensus 425 ~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v~ 456 (458)
++.+|++.. ++|+.++.+|.+|..|+++++
T Consensus 489 ~v~~ydp~t--~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 489 TPEIYVPEQ--DTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp CCEEEEGGG--TEEEECCCCSSCCCTTEEEEE
T ss_pred ceEEEcCCC--CceeecCCCCCccccccHhhc
Confidence 677788755 899999999999999998876
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.96 E-value=2e-29 Score=270.66 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=197.8
Q ss_pred eeeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCc-----CccceEEEEEcCC
Q 012701 155 IEHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAH-----HISHVIYRYSILT 227 (458)
Q Consensus 155 ~~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~-----~~~~~v~~yd~~t 227 (458)
.|.++|.. ..+.+|||.+++|..++++|... ++++++ +++||++||..... .....+++||+.+
T Consensus 158 ~E~~v~~~---~~~~~~dp~~~~W~~~~~~P~~~------~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t 228 (656)
T 1k3i_A 158 AEINVFQA---SSYTAPQPGLGRWGPTIDLPIVP------AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST 228 (656)
T ss_dssp SEEEEEEC---SCCCCCCTTSCEEEEEEECSSCC------SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT
T ss_pred EEEEEeec---cccccCCCCCCeeeeeccCCCCc------eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC
Confidence 45555543 25889999999999999887632 233444 99999999975321 1345799999999
Q ss_pred CceeeCCCCCCCCceee--EE-EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEE
Q 012701 228 NSWSSGMRMNAPRCLFG--SA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVI 303 (458)
Q Consensus 228 ~~W~~~~~~p~~r~~~~--~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~ 303 (458)
++|+.++.||.+|..++ ++ ..+++||++||.+. .++++||+.+++|+.+++||.+|..|+++++ +|+|||+
T Consensus 229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~ 303 (656)
T 1k3i_A 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI 303 (656)
T ss_dssp CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE
T ss_pred CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccccccceEEecCCeEEEE
Confidence 99999999998887665 33 35899999999764 2799999999999999999999999999998 9999999
Q ss_pred ccccCCCCcccceEEEEECCCCceEEcC-----CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcC---------
Q 012701 304 GGIGGSDSKVLTCGEEYDLETETWTEIP-----NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYA--------- 369 (458)
Q Consensus 304 GG~~~~~~~~~~~v~~yd~~~~~W~~i~-----~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~--------- 369 (458)
||... ....++++++||+.+++|+.++ +|+..+.. ++++.++++|++||.
T Consensus 304 GG~~~-~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~---------------~~~~~~~~iyv~Gg~~g~~~~~~~ 367 (656)
T 1k3i_A 304 GGSWS-GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ---------------GLYRSDNHAWLFGWKKGSVFQAGP 367 (656)
T ss_dssp CCCCC-SSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT---------------GGGTTTCSCCEEECGGGCEEECCS
T ss_pred eCccc-CCcccccceEeCCCCCcceeCCCcccccccccccc---------------ceeecCCceEEEECCCCcEEEecC
Confidence 99531 2336788999999999999984 34444332 245578899999863
Q ss_pred CCeEEEEeCCCCceEEeccCCCc-----cCCCCcccEEEE--EeCCEEEEEcCCCCCCC--Cee---eEEEeecCCCCCC
Q 012701 370 DMEVRKYDKERRLWFTIGRLPER-----ANSMNGWGLAFR--ACGDRLIVIGGPKASGE--GFI---ELNSWVPSEGPPQ 437 (458)
Q Consensus 370 ~~~v~~yd~~~~~W~~v~~lp~~-----~~~~~~~~~a~~--~~~~~lyv~GG~~~~~~--~~~---~~~~~~~~~~~~~ 437 (458)
...+++||+.++.|......+.. ... .++.++. +.+++|||+||...... ... .+.+|++ .+++
T Consensus 368 ~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~--~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~--~~~~ 443 (656)
T 1k3i_A 368 STAMNWYYTSGSGDVKSAGKRQSNRGVAPDA--MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP--GTSP 443 (656)
T ss_dssp SSEEEEEECSTTCEEEEEEECEETTEECCCC--BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCST--TSCC
T ss_pred ccceeeeecCCcceeecCCccccccccCCCC--CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCC--CCCC
Confidence 35789999999998764322111 001 1234433 36899999999753221 112 3445554 5689
Q ss_pred ceEee--ccCCCceeeeEEEe
Q 012701 438 WNLLA--RKQSANFVYNCAVM 456 (458)
Q Consensus 438 W~~l~--~~p~~~~~~~~~v~ 456 (458)
|..+. .+|.+|..|+++++
T Consensus 444 W~~~~~~~mp~~R~~~~~~~l 464 (656)
T 1k3i_A 444 NTVFASNGLYFARTFHTSVVL 464 (656)
T ss_dssp EEEECTTCCSSCCBSCEEEEC
T ss_pred eeEEccCCCCCCcccCCeEEC
Confidence 99997 89999999998876
No 19
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.00 E-value=2.5e-07 Score=93.25 Aligned_cols=274 Identities=13% Similarity=0.157 Sum_probs=148.2
Q ss_pred CCCCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEEe---------------------------------
Q 012701 102 LDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRL--------------------------------- 148 (458)
Q Consensus 102 ~~~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~~--------------------------------- 148 (458)
...++..||+|++..||.+|+..++.+++.|||+|+.++.++.++..
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~ 94 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYI 94 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHh
Confidence 34578899999999999999999999999999999998876543221
Q ss_pred --------------------ecccCce-------eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC
Q 012701 149 --------------------RRLNGVI-------EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG 201 (458)
Q Consensus 149 --------------------gg~~~~~-------~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~ 201 (458)
.+..+.. ..++........+..||..+.+-... +.. +...-..+...
T Consensus 95 ~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~----h~~~v~~~~~~ 168 (445)
T 2ovr_B 95 RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVG----HTGGVWSSQMR 168 (445)
T ss_dssp HHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCC----CSSCEEEEEEE
T ss_pred hhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcC----CCCCEEEEEec
Confidence 0000000 00111112234455666655443211 111 10111123333
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (458)
+.+++.|+ ....+.+||..+++-... +........+...++..++.|+.+ ..+.+||..+++-...
T Consensus 169 ~~~l~s~~------~dg~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~ 234 (445)
T 2ovr_B 169 DNIIISGS------TDRTLKVWNAETGECIHT--LYGHTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHV 234 (445)
T ss_dssp TTEEEEEE------TTSCEEEEETTTTEEEEE--ECCCSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEE
T ss_pred CCEEEEEe------CCCeEEEEECCcCcEEEE--ECCCCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEE
Confidence 44555554 335688999988754321 111111222333345556666654 4688899887753221
Q ss_pred CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECC
Q 012701 282 PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNN 361 (458)
Q Consensus 282 ~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~ 361 (458)
+.........+..++++++.|+.+ ..+..||+.+.+-.. .+....... ..+..++
T Consensus 235 --~~~~~~~v~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~--~~~~~~~~v--------------~~~~~~~ 289 (445)
T 2ovr_B 235 --LMGHVAAVRCVQYDGRRVVSGAYD-------FMVKVWDPETETCLH--TLQGHTNRV--------------YSLQFDG 289 (445)
T ss_dssp --EECCSSCEEEEEECSSCEEEEETT-------SCEEEEEGGGTEEEE--EECCCSSCE--------------EEEEECS
T ss_pred --EcCCcccEEEEEECCCEEEEEcCC-------CEEEEEECCCCcEeE--EecCCCCce--------------EEEEECC
Confidence 111122223344588888887765 357888887654321 111111111 2344488
Q ss_pred EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 362 ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 362 ~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
..++.|+.++.|.+||..+.+-.. .+..... ...++ ..++.+++.|+.+. .+.+|+...
T Consensus 290 ~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~----~v~~~-~~~~~~l~~~~~dg------~i~vwd~~~ 348 (445)
T 2ovr_B 290 IHVVSGSLDTSIRVWDVETGNCIH--TLTGHQS----LTSGM-ELKDNILVSGNADS------TVKIWDIKT 348 (445)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE--EECCCCS----CEEEE-EEETTEEEEEETTS------CEEEEETTT
T ss_pred CEEEEEeCCCeEEEEECCCCCEEE--EEcCCcc----cEEEE-EEeCCEEEEEeCCC------eEEEEECCC
Confidence 888888888999999998765322 2221111 11223 33455666665432 466777654
No 20
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.84 E-value=8.7e-07 Score=89.57 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=36.6
Q ss_pred CCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhcc
Q 012701 104 SLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRS 142 (458)
Q Consensus 104 ~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s 142 (458)
..|..||+|++.+||.+|+..++.+++.|||+|+.++.+
T Consensus 13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 467789999999999999999999999999999999887
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.81 E-value=2.5e-07 Score=93.20 Aligned_cols=273 Identities=11% Similarity=0.095 Sum_probs=149.1
Q ss_pred CCCCCCChh----HHHHhhcccCcccchhhhhccHhHHHHhccCcEEEee------------c-----------------
Q 012701 104 SLIQPIGRD----NSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLR------------R----------------- 150 (458)
Q Consensus 104 ~l~~~LP~d----l~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~~g------------g----------------- 150 (458)
.++..||+| |+..||.+|+..++.+++.|||+|+.++.++.++..- +
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPP 88 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC-----
T ss_pred ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCC
Confidence 456789999 9999999999999999999999999888765543210 0
Q ss_pred -------------------------------c---------cCce---------eeEEEEEeccceEEEEecCCCcEEeC
Q 012701 151 -------------------------------L---------NGVI---------EHWVYFSCHLLEWEAFDPIRRRWMHL 181 (458)
Q Consensus 151 -------------------------------~---------~~~~---------~~~l~~~~~~~~~~~yDp~~~~W~~l 181 (458)
. .+.. ..++........+..||..+.+-...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~ 168 (435)
T 1p22_A 89 DGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI 168 (435)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE
T ss_pred CCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE
Confidence 0 0000 00111122233455666555433211
Q ss_pred CCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCC
Q 012701 182 PRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLE 261 (458)
Q Consensus 182 ~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~ 261 (458)
- .. +...-..+..++.+++.|+. ...+.+||..+++-... +........+...++..++.|+.+
T Consensus 169 ~--~~----h~~~v~~l~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d-- 232 (435)
T 1p22_A 169 L--TG----HTGSVLCLQYDERVIITGSS------DSTVRVWDVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKD-- 232 (435)
T ss_dssp E--CC----CSSCEEEEECCSSEEEEEET------TSCEEEEESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETT--
T ss_pred E--cC----CCCcEEEEEECCCEEEEEcC------CCeEEEEECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCC--
Confidence 1 10 11111223446666666653 35688999988764322 111122223334455566777755
Q ss_pred CCccCeEEEEeCCCCcEEEc-CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCC
Q 012701 262 GNILSSAEMYNSETQTWKVL-PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 340 (458)
Q Consensus 262 ~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~ 340 (458)
..+.+||..+..-... ..+.........+..+++.++.|+.+ ..+.+||+.+.+-... +.......
T Consensus 233 ----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~v 299 (435)
T 1p22_A 233 ----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-------RTIKVWNTSTCEFVRT--LNGHKRGI 299 (435)
T ss_dssp ----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEE--EECCSSCE
T ss_pred ----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC-------CeEEEEECCcCcEEEE--EcCCCCcE
Confidence 4588889887642110 11111122223334467777777654 3678899987653221 11111111
Q ss_pred CCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC
Q 012701 341 ARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG 420 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~ 420 (458)
.....++.+++.|+.++.|.+||..+.+- +..+..... .......++..++.|+.+.
T Consensus 300 --------------~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~-----~v~~~~~~~~~l~sg~~dg-- 356 (435)
T 1p22_A 300 --------------ACLQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEE-----LVRCIRFDNKRIVSGAYDG-- 356 (435)
T ss_dssp --------------EEEEEETTEEEEEETTSCEEEEETTTCCE--EEEECCCSS-----CEEEEECCSSEEEEEETTS--
T ss_pred --------------EEEEeCCCEEEEEeCCCeEEEEECCCCCE--EEEEeCCcC-----cEEEEEecCCEEEEEeCCC--
Confidence 33444677888888889999999987642 222221111 1233344777777777542
Q ss_pred CCeeeEEEeecC
Q 012701 421 EGFIELNSWVPS 432 (458)
Q Consensus 421 ~~~~~~~~~~~~ 432 (458)
.+.+|+..
T Consensus 357 ----~i~vwd~~ 364 (435)
T 1p22_A 357 ----KIKVWDLV 364 (435)
T ss_dssp ----CEEEEEHH
T ss_pred ----cEEEEECC
Confidence 45667653
No 22
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.47 E-value=6e-08 Score=67.51 Aligned_cols=45 Identities=4% Similarity=0.079 Sum_probs=38.9
Q ss_pred CCCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEE
Q 012701 103 DSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYR 147 (458)
Q Consensus 103 ~~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~ 147 (458)
...|..||+|++..||.+||..++.+++.|||+|+.++.++.++.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~ 50 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ 50 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 456889999999999999999999999999999999999877653
No 23
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.39 E-value=0.00015 Score=70.08 Aligned_cols=211 Identities=13% Similarity=-0.055 Sum_probs=120.3
Q ss_pred cceEEEEecCCCcEEeCCCCC-CCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCce-eeCCCCCCCCce
Q 012701 165 LLEWEAFDPIRRRWMHLPRMT-SNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMRMNAPRCL 242 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~ 242 (458)
...+..||+.+++....-... ...........++..++++|+... ..+.+.++|+.|.+- ..++....|+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~------~~~~v~viD~~t~~~~~~i~~~~~p~-- 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN------NSHVIFAIDINTFKEVGRITGFTSPR-- 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG------GGTEEEEEETTTCCEEEEEECCSSEE--
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc------CCCEEEEEECcccEEEEEcCCCCCCc--
Confidence 356888999998875421000 000000011234556899999963 346799999998876 3443333332
Q ss_pred eeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC----CcceeEEEECCEEEEEccccCCCCcccceE
Q 012701 243 FGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP----RKMCSGVFMDGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 243 ~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v 317 (458)
..+. -++++|+.... ...+.++|+.+++-...-+.... ..-...++.+++|||..-. ..+.+
T Consensus 88 -~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~------~~~~v 154 (328)
T 3dsm_A 88 -YIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS------YQNRI 154 (328)
T ss_dssp -EEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT------TCCEE
T ss_pred -EEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC------CCCEE
Confidence 3333 57899999643 26799999999874421111110 0223344578999998420 12478
Q ss_pred EEEECCCCceEE-cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC----------CeEEEEeCCCCceEEe
Q 012701 318 EEYDLETETWTE-IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----------MEVRKYDKERRLWFTI 386 (458)
Q Consensus 318 ~~yd~~~~~W~~-i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----------~~v~~yd~~~~~W~~v 386 (458)
.++|+.+++... ++.-..+. + ....-+|++|+..... +.|.++|+.+++....
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~-~---------------i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~ 218 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPT-S---------------LVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ 218 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBC-C---------------CEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred EEEECCCCeEEEEEEcCCCcc-c---------------eEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence 999999887543 22111111 1 1223368998886432 6899999998876543
Q ss_pred ccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 387 GRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 387 ~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
-.++..... .++++..-++.||+..+
T Consensus 219 ~~~~~g~~p---~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 219 FKFKLGDWP---SEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EECCTTCCC---EEEEECTTSCEEEEESS
T ss_pred EecCCCCCc---eeEEEecCCCEEEEEcc
Confidence 334332111 12333223678888764
No 24
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=3.4e-05 Score=71.12 Aligned_cols=185 Identities=18% Similarity=0.155 Sum_probs=120.9
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
.+...++.||+..|.. -.+.+.++|+.|++=...-+++..-...+.+..+++||++... .+.+++||+.+
T Consensus 25 GL~~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D~~t 94 (243)
T 3mbr_X 25 GLFYLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYDLAT 94 (243)
T ss_dssp EEEEETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTT
T ss_pred cEEEECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEECCc
Confidence 4455688999998763 3457999999999876555566555667788889999999542 36899999988
Q ss_pred CcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceE-EcC--CCCCCCCCCCCCCCCCCCcCC
Q 012701 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT-EIP--NMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~i~--~~p~~r~~~~~~~~~~~~~~~ 352 (458)
.+-. ...+.+..+.+.+.-+++||+.-| ...+..+|+++.+-. .+. ..+.+...
T Consensus 95 l~~~--~ti~~~~~Gwglt~dg~~L~vSdg--------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~------------- 151 (243)
T 3mbr_X 95 LTPR--ARFRYPGEGWALTSDDSHLYMSDG--------TAVIRKLDPDTLQQVGSIKVTAGGRPLDN------------- 151 (243)
T ss_dssp TEEE--EEEECSSCCCEEEECSSCEEEECS--------SSEEEEECTTTCCEEEEEECEETTEECCC-------------
T ss_pred CcEE--EEEeCCCCceEEeeCCCEEEEECC--------CCeEEEEeCCCCeEEEEEEEccCCccccc-------------
Confidence 7532 223333445556655677888754 246899999987633 222 11111110
Q ss_pred CCEEEEECCEEEEEEcCCCeEEEEeCCCCc---eEEeccCCCcc--------CCCCcccEEEEEeCCEEEEEcC
Q 012701 353 PPLVAVVNNELYAADYADMEVRKYDKERRL---WFTIGRLPERA--------NSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~---W~~v~~lp~~~--------~~~~~~~~a~~~~~~~lyv~GG 415 (458)
..-+...+++||+--...+.|.+.|+++++ |-.++.+.... ..+ .|.|...-+++|||.|=
T Consensus 152 lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl--NGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 152 LNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL--NGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE--EEEEEETTTTEEEEEET
T ss_pred ceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce--EEEEEcCCCCEEEEECC
Confidence 012445699999888788999999999986 44444432111 112 24555555789999994
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.13 E-value=0.00055 Score=66.02 Aligned_cols=232 Identities=14% Similarity=-0.041 Sum_probs=126.9
Q ss_pred ceEEEEecCCCcE-EeCCCCCCCccccccCceEEE-eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC----C
Q 012701 166 LEWEAFDPIRRRW-MHLPRMTSNECFMCSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA----P 239 (458)
Q Consensus 166 ~~~~~yDp~~~~W-~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~----~ 239 (458)
..+..+|+.+.+- ..++....++ .++. -+++|||... ..+.+.++|+.|++-...-+... .
T Consensus 64 ~~v~viD~~t~~~~~~i~~~~~p~-------~i~~~~~g~lyv~~~------~~~~v~~iD~~t~~~~~~i~~g~~~~~~ 130 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGFTSPR-------YIHFLSDEKAYVTQI------WDYRIFIINPKTYEITGYIECPDMDMES 130 (328)
T ss_dssp TEEEEEETTTCCEEEEEECCSSEE-------EEEEEETTEEEEEEB------SCSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred CEEEEEECcccEEEEEcCCCCCCc-------EEEEeCCCeEEEEEC------CCCeEEEEECCCCeEEEEEEcCCccccC
Confidence 4678899998876 3343332222 2233 5789999863 24679999999987542111111 0
Q ss_pred CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-EECCEEEEEccccCCCC---cccc
Q 012701 240 RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDS---KVLT 315 (458)
Q Consensus 240 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~---~~~~ 315 (458)
..-...+..+++|||..-. ..+.+.++|+.+++....-+. ...-...+ .-+|++|+......... ....
T Consensus 131 ~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~ 203 (328)
T 3dsm_A 131 GSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAP 203 (328)
T ss_dssp CBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred CCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCc
Confidence 0223444578999998420 136799999999875432111 11112222 23689988753220000 0126
Q ss_pred eEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCcc
Q 012701 316 CGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERA 393 (458)
Q Consensus 316 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~ 393 (458)
.+.++|+.+.+....-.++....-. .++.. ++.||+... .|++||+.+++.....-++...
T Consensus 204 ~v~~id~~t~~v~~~~~~~~g~~p~--------------~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 204 SLYRIDAETFTVEKQFKFKLGDWPS--------------EVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCE--------------EEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCS
T ss_pred eEEEEECCCCeEEEEEecCCCCCce--------------eEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCC
Confidence 7999999988765322232221111 44554 467888754 8999999887753222222111
Q ss_pred CCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCce
Q 012701 394 NSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWN 439 (458)
Q Consensus 394 ~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 439 (458)
. .-+++++...++.|||....+- .....+.+|+++ +...|+
T Consensus 267 ~--~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 267 T--KYYGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp S--CEEEEEECTTTCCEEEEECTTS--SSEEEEEEECTT-CCEEEE
T ss_pred C--ceEEEEEcCCCCeEEEEccccc--ccCCEEEEECCC-CCEEEE
Confidence 1 0122332224789999873211 124567788876 444443
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.07 E-value=0.00014 Score=67.59 Aligned_cols=186 Identities=12% Similarity=0.010 Sum_probs=116.1
Q ss_pred EEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 197 SLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 197 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
+...++.||+..|.. -.+.+.++|+.|++=..--+++..-...+.+..+++||++... .+.+++||+.+.
T Consensus 48 L~~~~~~LyestG~~----g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~~t~ 117 (262)
T 3nol_A 48 FFYRNGYFYESTGLN----GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNIRNL 117 (262)
T ss_dssp EEEETTEEEEEEEET----TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEETTTC
T ss_pred EEEECCEEEEECCCC----CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEECccC
Confidence 344588999998753 3457899999998765444454434455678889999999542 368999999987
Q ss_pred cEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceE-EcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 277 TWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT-EIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
+-.. ..+.+..+.+.+.-+++||+.-| .+.++.+|+++.+-. .++.-..++... .+.-
T Consensus 118 ~~~~--ti~~~~eG~glt~dg~~L~~SdG--------s~~i~~iDp~T~~v~~~I~V~~~g~~~~-----------~lNE 176 (262)
T 3nol_A 118 RQVR--SFNYDGEGWGLTHNDQYLIMSDG--------TPVLRFLDPESLTPVRTITVTAHGEELP-----------ELNE 176 (262)
T ss_dssp CEEE--EEECSSCCCCEEECSSCEEECCS--------SSEEEEECTTTCSEEEEEECEETTEECC-----------CEEE
T ss_pred cEEE--EEECCCCceEEecCCCEEEEECC--------CCeEEEEcCCCCeEEEEEEeccCCcccc-----------ccce
Confidence 6432 22223344555555667887643 246899999986633 222110111000 0002
Q ss_pred EEEECCEEEEEEcCCCeEEEEeCCCCce---EEeccCCCcc-------CCCCcccEEEEEeCCEEEEEcC
Q 012701 356 VAVVNNELYAADYADMEVRKYDKERRLW---FTIGRLPERA-------NSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 356 ~~~~~~~lyv~gg~~~~v~~yd~~~~~W---~~v~~lp~~~-------~~~~~~~~a~~~~~~~lyv~GG 415 (458)
+...+|+||+--...+.|.+.|+++++= -.++.+.... ..+ .|.|...-+++|||.|-
T Consensus 177 Le~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl--NGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 177 LEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL--NGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE--EEEEEETTTTEEEEEET
T ss_pred eEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce--EEEEEcCCCCEEEEECC
Confidence 3455999998887889999999999864 3343332111 111 24666556789999994
No 27
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.04 E-value=0.0047 Score=60.18 Aligned_cols=227 Identities=12% Similarity=0.110 Sum_probs=124.3
Q ss_pred ceEEEEecCCC--cEEeCCCCCCC---ccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCC
Q 012701 166 LEWEAFDPIRR--RWMHLPRMTSN---ECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNA 238 (458)
Q Consensus 166 ~~~~~yDp~~~--~W~~l~~~p~~---~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~ 238 (458)
..+.+||+.++ .|..-...... ..........+..++.||+.. ....++.+|+.|++ |+.-..-.
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~~g~l~a~d~~tG~~~W~~~~~~~- 134 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-------EKAQVYALNTSDGTVAWQTKVAGE- 134 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-------TTSEEEEEETTTCCEEEEEECSSC-
T ss_pred CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-------CCCEEEEEECCCCCEEEEEeCCCc-
Confidence 35788898776 46543321110 000001123455688888864 23579999999875 76532211
Q ss_pred CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCC--CCcceeEEEECCEEEEEccccCCCCccc
Q 012701 239 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKN--PRKMCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
.....+..++.+|+... ...+..||+.+++ |+.-...+. .+.....+..++.+|+- ...
T Consensus 135 --~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~~------- 197 (376)
T 3q7m_A 135 --ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GDN------- 197 (376)
T ss_dssp --CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CTT-------
T ss_pred --eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cCC-------
Confidence 12223455788877532 2479999998886 876543221 12223445668887773 221
Q ss_pred ceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEeccCC
Q 012701 315 TCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTIGRLP 390 (458)
Q Consensus 315 ~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~lp 390 (458)
..+..||+.+.+ |+.-...+...... ..........++.++.||+.+ ..+.+..+|+.+++ |+.- .+
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~v~~~~-~~g~l~~~d~~tG~~~w~~~--~~ 268 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEI------DRLSDVDTTPVVVNGVVFALA-YNGNLTALDLRSGQIMWKRE--LG 268 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------------CCCCCCEEETTEEEEEC-TTSCEEEEETTTCCEEEEEC--CC
T ss_pred CEEEEEECCCCcEEEEEecccCCCCccc------ccccccCCCcEEECCEEEEEe-cCcEEEEEECCCCcEEeecc--CC
Confidence 358899998664 76543322211000 000000012356688888875 45689999998764 7643 11
Q ss_pred CccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 391 ERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
. .......++.||+.... ..+.++++..+...|+.-
T Consensus 269 ~--------~~~~~~~~~~l~~~~~~-------g~l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 269 S--------VNDFIVDGNRIYLVDQN-------DRVMALTIDGGVTLWTQS 304 (376)
T ss_dssp C--------EEEEEEETTEEEEEETT-------CCEEEEETTTCCEEEEEC
T ss_pred C--------CCCceEECCEEEEEcCC-------CeEEEEECCCCcEEEeec
Confidence 1 13345668899987631 146677777666678653
No 28
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.01 E-value=0.0051 Score=59.94 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=128.9
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeC
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSG 233 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 233 (458)
.+|+......+.+||+.++ .|..-..- .. ....+..++.||+.. ....++.||+.|++ |+.-
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~--~~-----~~~p~~~~~~v~v~~-------~~g~l~~~d~~tG~~~W~~~ 170 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKVAG--EA-----LSRPVVSDGLVLIHT-------SNGQLQALNEADGAVKWTVN 170 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSS--CC-----CSCCEEETTEEEEEC-------TTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeCCC--ce-----EcCCEEECCEEEEEc-------CCCeEEEEECCCCcEEEEEe
Confidence 4555555567999999877 47543221 11 112245688888764 23479999998875 8654
Q ss_pred CCCCC--CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCC--------cceeEEEECCEEE
Q 012701 234 MRMNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPR--------KMCSGVFMDGKFY 301 (458)
Q Consensus 234 ~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r--------~~~~~~~~~g~ly 301 (458)
...+. .+.....+..++.||+. .. ...+..||+.+++ |+.-...+... .....++.++.+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~ 243 (376)
T 3q7m_A 171 LDMPSLSLRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVF 243 (376)
T ss_dssp CCC-----CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEE
T ss_pred CCCCceeecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEE
Confidence 32221 12223445557877763 21 2468999998875 87643322211 2233456789998
Q ss_pred EEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCC
Q 012701 302 VIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 302 v~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~ 379 (458)
+.+. . ..+..+|+.+.+ |+.-.. . .. ..++.++.||+.. ..+.+..||..
T Consensus 244 ~~~~-~-------g~l~~~d~~tG~~~w~~~~~--~---~~--------------~~~~~~~~l~~~~-~~g~l~~~d~~ 295 (376)
T 3q7m_A 244 ALAY-N-------GNLTALDLRSGQIMWKRELG--S---VN--------------DFIVDGNRIYLVD-QNDRVMALTID 295 (376)
T ss_dssp EECT-T-------SCEEEEETTTCCEEEEECCC--C---EE--------------EEEEETTEEEEEE-TTCCEEEEETT
T ss_pred EEec-C-------cEEEEEECCCCcEEeeccCC--C---CC--------------CceEECCEEEEEc-CCCeEEEEECC
Confidence 8642 1 257889998764 765311 0 11 4566788999886 35689999998
Q ss_pred CCc--eEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 380 RRL--WFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 380 ~~~--W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
+++ |+.- .++.... .+.+..++.||+.... ..+.++++..+...|+.
T Consensus 296 tG~~~w~~~-~~~~~~~------~~~~~~~~~l~v~~~~-------g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 296 GGVTLWTQS-DLLHRLL------TSPVLYNGNLVVGDSE-------GYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp TCCEEEEEC-TTTTSCC------CCCEEETTEEEEECTT-------SEEEEEETTTCCEEEEE
T ss_pred CCcEEEeec-ccCCCcc------cCCEEECCEEEEEeCC-------CeEEEEECCCCcEEEEE
Confidence 775 7643 1222111 2234568888876531 25677777766666754
No 29
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.96 E-value=0.00024 Score=66.13 Aligned_cols=182 Identities=11% Similarity=-0.011 Sum_probs=114.3
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
.+...++.||+..|.. ..+.++|+.|++=..-- ++..-...+.+..+++||++... .+.+++||+.+
T Consensus 59 GL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~~T 125 (268)
T 3nok_A 59 GLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSGMP 125 (268)
T ss_dssp EEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEETTT
T ss_pred eEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEECCc
Confidence 3455689999998752 23899999998753322 44433445678889999999542 36799999998
Q ss_pred CcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEE-cCC--CCCCCCCCCCCCCCCCCcCC
Q 012701 276 QTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPN--MSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~--~p~~r~~~~~~~~~~~~~~~ 352 (458)
.+-. ...+.+..+.+.+.-+++||+.-| .+.+..+|+++.+-.. +.. -+.+...
T Consensus 126 l~~~--~ti~~~~eGwGLt~Dg~~L~vSdG--------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~------------- 182 (268)
T 3nok_A 126 PQRE--RTTRYSGEGWGLCYWNGKLVRSDG--------GTMLTFHEPDGFALVGAVQVKLRGQPVEL------------- 182 (268)
T ss_dssp TEEE--EEEECSSCCCCEEEETTEEEEECS--------SSEEEEECTTTCCEEEEEECEETTEECCC-------------
T ss_pred CcEE--EEEeCCCceeEEecCCCEEEEECC--------CCEEEEEcCCCCeEEEEEEeCCCCccccc-------------
Confidence 7533 222223345566677888999854 2478999999876332 221 1111100
Q ss_pred CCEEEEECCEEEEEEcCCCeEEEEeCCCCc---eEEeccCCC--------ccCCCCcccEEEEEeCCEEEEEcC
Q 012701 353 PPLVAVVNNELYAADYADMEVRKYDKERRL---WFTIGRLPE--------RANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~---W~~v~~lp~--------~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
..-+...+|+||+--...+.|.+.|+++++ |-.++.+.. ....+ .|+|...-+++|||.|=
T Consensus 183 lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 183 INELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEET
T ss_pred ccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeCC
Confidence 012345599999887778999999999986 444432211 11112 23555444689999883
No 30
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.84 E-value=3.5e-06 Score=79.78 Aligned_cols=46 Identities=9% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCCCCCCChhHHHHhhcccCcccch-hhhhccHhHHHHhccCcEEEe
Q 012701 103 DSLIQPIGRDNSISCLIRCSRSDYG-SIASLNQSFRSLIRSGELYRL 148 (458)
Q Consensus 103 ~~l~~~LP~dl~~~iL~rlp~~~~~-~l~~Vck~wr~lv~s~~~y~~ 148 (458)
...+..||+||+.+||+|||..+|. ++++|||+|+.|+.++.|+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~ 94 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLL 94 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHH
Confidence 4578899999999999999999999 999999999999999887654
No 31
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.83 E-value=0.00065 Score=62.56 Aligned_cols=119 Identities=19% Similarity=0.082 Sum_probs=85.8
Q ss_pred CCCCcee--eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCccc
Q 012701 237 NAPRCLF--GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 237 p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
|+....| +....++.||+..|..+. +.+.++|+.+++=..--+++...++.+.+..+++||++....
T Consensus 16 phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~------- 84 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN------- 84 (243)
T ss_dssp ECCTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-------
T ss_pred CCCCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC-------
Confidence 4444333 677778999999997643 679999999998665545665555666778899999985433
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 315 TCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
+.+++||+++.+-. ..++.+..+. .++.-+++||+-.| ++.|..+|+++.+-
T Consensus 85 ~~v~v~D~~tl~~~--~ti~~~~~Gw--------------glt~dg~~L~vSdg-s~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 85 HEGFVYDLATLTPR--ARFRYPGEGW--------------ALTSDDSHLYMSDG-TAVIRKLDPDTLQQ 136 (243)
T ss_dssp SEEEEEETTTTEEE--EEEECSSCCC--------------EEEECSSCEEEECS-SSEEEEECTTTCCE
T ss_pred CEEEEEECCcCcEE--EEEeCCCCce--------------EEeeCCCEEEEECC-CCeEEEEeCCCCeE
Confidence 57899999886532 2333333444 66766778999987 78899999998654
No 32
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.77 E-value=0.0023 Score=60.67 Aligned_cols=217 Identities=9% Similarity=0.041 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc-eeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCC-C
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS-WSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSET-Q 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t-~ 276 (458)
+..||+.+. ....+.+||...+. ......+.....-...+.. +..||+.+..+ ..+.+||..+ +
T Consensus 95 g~~l~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~ 162 (343)
T 1ri6_A 95 GQFVFVGSY------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ------DRICLFTVSDDG 162 (343)
T ss_dssp SSEEEEEET------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG------TEEEEEEECTTS
T ss_pred CCEEEEEec------CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC------CEEEEEEecCCC
Confidence 345666653 23468888884221 2222111211112223232 34677775322 4688999987 6
Q ss_pred cEEEcC----CCCCCCcceeEEE-ECCE-EEEEccccCCCCcccceEEEEECC--CCceEE---cCCCCCCCCCCCCCCC
Q 012701 277 TWKVLP----SMKNPRKMCSGVF-MDGK-FYVIGGIGGSDSKVLTCGEEYDLE--TETWTE---IPNMSPARGGAARGTE 345 (458)
Q Consensus 277 ~W~~~~----~~p~~r~~~~~~~-~~g~-lyv~GG~~~~~~~~~~~v~~yd~~--~~~W~~---i~~~p~~r~~~~~~~~ 345 (458)
+...+. ..+....-..+++ -+++ ||+.+... ..+.+||+. +.++.. +..++....+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~-------~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~----- 230 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-------SSVDVWELKDPHGNIECVQTLDMMPENFSDT----- 230 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-------TEEEEEESSCTTSCCEEEEEEECSCTTCCSC-----
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCC-------CEEEEEEecCCCCcEEEEeeccccCcccccc-----
Confidence 665322 1111111112222 2454 66665332 357888884 454432 22233221111
Q ss_pred CCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCC--CCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCC
Q 012701 346 MPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKE--RRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGE 421 (458)
Q Consensus 346 ~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~--~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~ 421 (458)
..+..++.. ++ .||+.+...+.+.+||+. +++++.+..++..... .++++...+..||+.++..
T Consensus 231 -----~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~~~~~---- 298 (343)
T 1ri6_A 231 -----RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQP---RGFNVDHSGKYLIAAGQKS---- 298 (343)
T ss_dssp -----CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSC---CCEEECTTSSEEEEECTTT----
T ss_pred -----CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCcc---ceEEECCCCCEEEEecCCC----
Confidence 000023332 33 677777677899999988 5677777655433221 1233322344566665321
Q ss_pred CeeeEEEeecCCCCCCceEeeccCCCceeeeEEE
Q 012701 422 GFIELNSWVPSEGPPQWNLLARKQSANFVYNCAV 455 (458)
Q Consensus 422 ~~~~~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v 455 (458)
..+.+|..+..+.+++.+..++.+..-.+.++
T Consensus 299 --~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~ 330 (343)
T 1ri6_A 299 --HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV 330 (343)
T ss_dssp --CEEEEEEEETTTTEEEEEEEEECSSSCCEEEE
T ss_pred --CeEEEEEEcCCCceeeEccccccCCCCeeEEE
Confidence 25677877666678888877766554444444
No 33
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.75 E-value=0.025 Score=53.72 Aligned_cols=219 Identities=8% Similarity=-0.032 Sum_probs=112.9
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC----
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP---- 239 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~---- 239 (458)
...+..+|+.+.+-...-+..... ....+.- ++.+|+.+.. .+.+++||+.+++-...-+.+..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~ 136 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKP-----FGATINNTTQTLWFGNTV------NSAVTAIDAKTGEVKGRLVLDDRKRTE 136 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCC-----CSEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEEESCCCCCCS
T ss_pred CccEEEEcCCCCeEEEEEecCCCc-----ceEEECCCCCEEEEEecC------CCEEEEEeCCCCeeEEEEecCCCcccc
Confidence 346889999887654322222111 1111222 4568877642 35799999998764322111111
Q ss_pred ----CceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECC-EEEEEccccCCCC
Q 012701 240 ----RCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDG-KFYVIGGIGGSDS 311 (458)
Q Consensus 240 ----r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g-~lyv~GG~~~~~~ 311 (458)
..-...+.. ++.+|+.+... ...+.+||+.+.+-...-+.. .......++ -+| .||+... +
T Consensus 137 ~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-~---- 205 (353)
T 3vgz_A 137 EVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNA-D---- 205 (353)
T ss_dssp SCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECT-T----
T ss_pred ccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcC-C----
Confidence 111223332 45788876322 256999999887643321211 111222233 244 5666532 1
Q ss_pred cccceEEEEECCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEecc
Q 012701 312 KVLTCGEEYDLETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 312 ~~~~~v~~yd~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~ 388 (458)
..+.+||+.+.+-...-..... .... +..++.. ++.||+.....+.|.+||+.+.+....-.
T Consensus 206 ---~~i~~~d~~~~~~~~~~~~~~~~~~~~------------~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 270 (353)
T 3vgz_A 206 ---GELITIDTADNKILSRKKLLDDGKEHF------------FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA 270 (353)
T ss_dssp ---SEEEEEETTTTEEEEEEECCCSSSCCC------------EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred ---CeEEEEECCCCeEEEEEEcCCCCCCcc------------cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence 3678899988764322111111 1111 0023443 45688887777899999998877544433
Q ss_pred CCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 389 LPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 389 lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
.+.+ .+.++...++.||+.+... ..+.+|+..
T Consensus 271 ~~~~------~~~~~s~dg~~l~v~~~~~------~~v~~~d~~ 302 (353)
T 3vgz_A 271 APES------LAVLFNPARNEAYVTHRQA------GKVSVIDAK 302 (353)
T ss_dssp CSSC------CCEEEETTTTEEEEEETTT------TEEEEEETT
T ss_pred cCCC------ceEEECCCCCEEEEEECCC------CeEEEEECC
Confidence 3332 1344433455688876432 245666653
No 34
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.68 E-value=0.0037 Score=58.45 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=108.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (458)
+.||+..|.. ..+.+.++|+.|++=...-+++......+.+..+++||+..-. .+.+.+||+.+.+= +
T Consensus 32 g~Lyvstg~~----~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~------~~~v~viD~~t~~v--~ 99 (266)
T 2iwa_A 32 DTLFESTGLY----GRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL------KNIGFIYDRRTLSN--I 99 (266)
T ss_dssp TEEEEEECST----TTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT------CSEEEEEETTTTEE--E
T ss_pred CeEEEECCCC----CCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec------CCEEEEEECCCCcE--E
Confidence 7999986642 3467999999998764433343333445677779999999542 36799999997642 2
Q ss_pred CCCCCC-CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceE-EcCC--CCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 282 PSMKNP-RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT-EIPN--MSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 282 ~~~p~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~i~~--~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..++.+ ..+...+.-++++|+.-| .+.+.++|+++.+=. .++. .+.+... +..+.
T Consensus 100 ~~i~~g~~~g~glt~Dg~~l~vs~g--------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~-------------~nele 158 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGKILYGSDG--------TSILYEIDPHTFKLIKKHNVKYNGHRVIR-------------LNELE 158 (266)
T ss_dssp EEEECCSSSCCEEEECSSSEEEECS--------SSEEEEECTTTCCEEEEEECEETTEECCC-------------EEEEE
T ss_pred EEEECCCCCeEEEEECCCEEEEECC--------CCeEEEEECCCCcEEEEEEECCCCccccc-------------ceeEE
Confidence 222222 223334444567888643 247899999886532 2221 1111100 01234
Q ss_pred EECCEEEEEEcCCCeEEEEeCCCCc---eEEeccCCCc-----cCC-CCcccEEEEEeCCEEEEEcCC
Q 012701 358 VVNNELYAADYADMEVRKYDKERRL---WFTIGRLPER-----ANS-MNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 358 ~~~~~lyv~gg~~~~v~~yd~~~~~---W~~v~~lp~~-----~~~-~~~~~~a~~~~~~~lyv~GG~ 416 (458)
..+++||+--...+.|.+.|+++++ |-.++.+... ... ..-.|.++..-++++||.|+.
T Consensus 159 ~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 159 YINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp EETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred EECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 4589999887778999999999875 3333322100 000 001245555556799999974
No 35
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.68 E-value=0.034 Score=51.46 Aligned_cols=221 Identities=11% Similarity=0.117 Sum_probs=112.0
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceee
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 244 (458)
.+..||+.......++..............++. -++.|||.+.. ....+.+||+....-..+..... ..-.+
T Consensus 52 ~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~i~~~d~~g~~~~~~~~~~~-~~~~~ 125 (286)
T 1q7f_A 52 RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIYNQYGQFVRKFGATIL-QHPRG 125 (286)
T ss_dssp EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEECTTSCEEEEECTTTC-SCEEE
T ss_pred EEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCEEEEECCCCcEEEEecCccC-CCceE
Confidence 467788775543333321111101111112233 26789988632 24578999965443333322111 11123
Q ss_pred EEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEE
Q 012701 245 SASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 245 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd 321 (458)
.+.. ++.+|+....+ ..+.+||+.......+.... .......+.+ +|+|||..... ..|.+||
T Consensus 126 i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~-------~~i~~~~ 191 (286)
T 1q7f_A 126 VTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSK-HLEFPNGVVVNDKQEIFISDNRA-------HCVKVFN 191 (286)
T ss_dssp EEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTT-TCSSEEEEEECSSSEEEEEEGGG-------TEEEEEE
T ss_pred EEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCC-ccCCcEEEEECCCCCEEEEECCC-------CEEEEEc
Confidence 3332 56788875422 56889998765444432111 1112223333 58999875432 4689999
Q ss_pred CCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCC-eEEEEeCCCCceEEecc-CCCccCCCCc
Q 012701 322 LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADM-EVRKYDKERRLWFTIGR-LPERANSMNG 398 (458)
Q Consensus 322 ~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~-~v~~yd~~~~~W~~v~~-lp~~~~~~~~ 398 (458)
+.......+..- .... .+..+++- ++.||+.+...+ .|.+||+..+.-..+.. .+....
T Consensus 192 ~~g~~~~~~~~~--g~~~------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~---- 253 (286)
T 1q7f_A 192 YEGQYLRQIGGE--GITN------------YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQC---- 253 (286)
T ss_dssp TTCCEEEEESCT--TTSC------------SEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCE----
T ss_pred CCCCEEEEEccC--CccC------------CCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcc----
Confidence 876544444321 0000 01134432 678999987665 99999987654444432 111110
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 399 WGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 399 ~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
+++++ .-+++||+... . ..+.+|++..
T Consensus 254 ~~i~~-~~~g~l~vs~~-~------~~v~v~~~~~ 280 (286)
T 1q7f_A 254 FDVAL-MDDGSVVLASK-D------YRLYIYRYVQ 280 (286)
T ss_dssp EEEEE-ETTTEEEEEET-T------TEEEEEECSC
T ss_pred eeEEE-CCCCcEEEECC-C------CeEEEEEccc
Confidence 12222 24678998852 1 2566777644
No 36
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.57 E-value=0.012 Score=54.01 Aligned_cols=214 Identities=13% Similarity=-0.032 Sum_probs=108.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 244 (458)
..+..||+.+.....++...... ...++.. ++.||+... .+.+++||+.++.......... ..-.+
T Consensus 46 ~~i~~~~~~~~~~~~~~~~~~~~-----p~~i~~~~~g~l~v~~~-------~~~i~~~d~~~~~~~~~~~~~~-~~p~~ 112 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLPFNGLYQ-----PQGLAVDGAGTVYVTDF-------NNRVVTLAAGSNNQTVLPFDGL-NYPEG 112 (270)
T ss_dssp CEEEEECC-----EECCCCSCCS-----CCCEEECTTCCEEEEET-------TTEEEEECTTCSCCEECCCCSC-SSEEE
T ss_pred CcEEEecCCCcccceEeeCCcCC-----cceeEECCCCCEEEEcC-------CCEEEEEeCCCceEeeeecCCc-CCCcc
Confidence 35667887766544433211111 1112222 567888753 3468999998876554422111 12233
Q ss_pred EEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEEC
Q 012701 245 SASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDL 322 (458)
Q Consensus 245 ~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~ 322 (458)
.+.. +++||+.... ...+.+|+..+........... ..-...++. +|+||+..... ..+.+||+
T Consensus 113 i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~-------~~i~~~~~ 178 (270)
T 1rwi_B 113 LAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTDN-------NRVVKLEA 178 (270)
T ss_dssp EEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGGG-------TEEEEECT
T ss_pred eEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECCC-------CEEEEEec
Confidence 3333 5678888542 2468888877765544322111 111223333 68898875432 46889999
Q ss_pred CCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccE
Q 012701 323 ETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGL 401 (458)
Q Consensus 323 ~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~ 401 (458)
.+..-....... ... +..+++- +|.||+.....+.|.+||+.+..-..+.. . ... .-.
T Consensus 179 ~~~~~~~~~~~~--~~~-------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~-~-~~~----~p~ 237 (270)
T 1rwi_B 179 ESNNQVVLPFTD--ITA-------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPF-T-GLN----TPL 237 (270)
T ss_dssp TTCCEEECCCSS--CCS-------------EEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCC-C-SCS----CEE
T ss_pred CCCceEeecccC--CCC-------------ceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeecc-C-CCC----Cce
Confidence 876644332110 011 1134443 56899998777899999997764333211 1 101 112
Q ss_pred EEEE-eCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 402 AFRA-CGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 402 a~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
+++. -+++||+..... ..+.+|+..+
T Consensus 238 ~i~~~~~g~l~v~~~~~------~~v~~~~~~~ 264 (270)
T 1rwi_B 238 AVAVDSDRTVYVADRGN------DRVVKLTSLE 264 (270)
T ss_dssp EEEECTTCCEEEEEGGG------TEEEEECCCG
T ss_pred eEEECCCCCEEEEECCC------CEEEEEcCCC
Confidence 3333 356788886422 2456666544
No 37
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.49 E-value=0.0026 Score=61.94 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=95.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
..+..+|..+++-...-..... -..+++ +..||+.++ ....+.+||+.+++....-..+. .-
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~-------~~~~~~s~dg~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~--~v 76 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSN-------PMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGS--SP 76 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSS-------EEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSS--SE
T ss_pred CEEEEEECCCCeEEEEeecCCC-------cceEEECCCCCEEEEECC------CCCeEEEEECCCCeEEEEEECCC--Cc
Confidence 4577788887754432111111 011222 346777764 34579999998886544322222 22
Q ss_pred eeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCcccceEE
Q 012701 243 FGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGE 318 (458)
Q Consensus 243 ~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~ 318 (458)
.+++.. +..||+.+..+ ..+.+||+.+++-...-.. .......++. ++ .||+.++.+ ..+.
T Consensus 77 ~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~-------~~v~ 141 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNGD-------KTVS 141 (391)
T ss_dssp EEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTT-------TEEE
T ss_pred cceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCCC-------CEEE
Confidence 222222 44677765432 5699999998865433221 1222233332 44 466776543 3688
Q ss_pred EEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 319 EYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 319 ~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
+||+.+.+....-... .... .++.. ++.||+.+...+.|.+||+.+++-...
T Consensus 142 ~~d~~~~~~~~~~~~~--~~~~--------------~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 195 (391)
T 1l0q_A 142 VINTVTKAVINTVSVG--RSPK--------------GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195 (391)
T ss_dssp EEETTTTEEEEEEECC--SSEE--------------EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEECCCCcEEEEEecC--CCcc--------------eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999887654332111 1001 23332 336778887788999999988765433
No 38
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.48 E-value=0.0013 Score=61.22 Aligned_cols=112 Identities=12% Similarity=-0.103 Sum_probs=78.3
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECC
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE 323 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 323 (458)
+....++.||+..|..+. +.+.++|+++++=..--+++..-+..+.+..+++||++.... +.+.+||++
T Consensus 47 GL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~-------~~v~v~D~~ 115 (262)
T 3nol_A 47 GFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN-------GLGFVWNIR 115 (262)
T ss_dssp EEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSS-------SEEEEEETT
T ss_pred eEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeC-------CEEEEEECc
Confidence 445558899999996543 678999999998654444554444455677899999995433 578999998
Q ss_pred CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 324 TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 324 ~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
+.+-.. .++.+..+. .++.-++.||+..| .+.++.+|+++.+-
T Consensus 116 t~~~~~--ti~~~~eG~--------------glt~dg~~L~~SdG-s~~i~~iDp~T~~v 158 (262)
T 3nol_A 116 NLRQVR--SFNYDGEGW--------------GLTHNDQYLIMSDG-TPVLRFLDPESLTP 158 (262)
T ss_dssp TCCEEE--EEECSSCCC--------------CEEECSSCEEECCS-SSEEEEECTTTCSE
T ss_pred cCcEEE--EEECCCCce--------------EEecCCCEEEEECC-CCeEEEEcCCCCeE
Confidence 876432 222223444 56655678888876 68899999998653
No 39
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.0041 Score=59.76 Aligned_cols=200 Identities=10% Similarity=0.082 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+++.|+. ...+.+||..+++|..+..+........++.+ + +.+++.|+.+ ..+.+||..+..
T Consensus 69 ~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~ 136 (379)
T 3jrp_A 69 GTILASCSY------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENG 136 (379)
T ss_dssp CSEEEEEET------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTS
T ss_pred CCEEEEecc------CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCC
Confidence 455555543 35689999999988666544322222233333 2 5566777654 468888887763
Q ss_pred EEEcCCCCC-CCcceeEEEE--------------CCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCC
Q 012701 278 WKVLPSMKN-PRKMCSGVFM--------------DGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGA 340 (458)
Q Consensus 278 W~~~~~~p~-~r~~~~~~~~--------------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~ 340 (458)
-...-.+.. .....+.+.. ++.+++.|+.+ ..+.+||+.+.. |..+..+.......
T Consensus 137 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~h~~~v 209 (379)
T 3jrp_A 137 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDWV 209 (379)
T ss_dssp CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-------CeEEEEEecCCCcceeeEEEEecccCcE
Confidence 211000101 1111122222 47778887765 247778876543 44333222111111
Q ss_pred CCCCCCCCCcCCCCEEEEE-C---CEEEEEEcCCCeEEEEeCCCCceE---EeccCCCccCCCCcccEEEE-EeCCEEEE
Q 012701 341 ARGTEMPASAEAPPLVAVV-N---NELYAADYADMEVRKYDKERRLWF---TIGRLPERANSMNGWGLAFR-ACGDRLIV 412 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~---~~lyv~gg~~~~v~~yd~~~~~W~---~v~~lp~~~~~~~~~~~a~~-~~~~~lyv 412 (458)
..++.. + +.+++.++.++.|.+||..+.... .+........ .-..+. ..++.+++
T Consensus 210 -------------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 210 -------------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD----VLWRASWSLSGNVLA 272 (379)
T ss_dssp -------------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS----CEEEEEECSSSCCEE
T ss_pred -------------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCC----cEEEEEEcCCCCEEE
Confidence 022222 3 688888888899999999876421 1111111110 112222 23566666
Q ss_pred EcCCCCCCCCeeeEEEeecCCCCCCceEeecc
Q 012701 413 IGGPKASGEGFIELNSWVPSEGPPQWNLLARK 444 (458)
Q Consensus 413 ~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~ 444 (458)
+|+.+. .+.+|+.+. ...|..+...
T Consensus 273 ~~~~dg------~i~iw~~~~-~~~~~~~~~~ 297 (379)
T 3jrp_A 273 LSGGDN------KVTLWKENL-EGKWEPAGEV 297 (379)
T ss_dssp EEESSS------SEEEEEEEE-TTEEEEEEEE
T ss_pred EecCCC------cEEEEeCCC-CCccccccce
Confidence 665432 366777653 2577776554
No 40
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.37 E-value=0.0048 Score=59.18 Aligned_cols=189 Identities=12% Similarity=0.056 Sum_probs=94.0
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce-eeE
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL-FGS 245 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~ 245 (458)
.++.+|+.++++..+......... ...++.-+++||+.+... ....+++||+.+++++.+..+...... ...
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p---~~~a~spdg~l~~~~~~~----~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNP---TYLALSAKDCLYSVDKED----DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCC---CCEEECTTCEEEEEEEET----TEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred EEEEEcCCCCeEEEeeeeeccCCc---ceEEEccCCeEEEEEecC----CCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 366788888877654322111100 011122367787775311 246799999988887766542211111 122
Q ss_pred E-Ee-CCEEEEEeccCCCCCccCeEEEEeCC-CCcEEEcCCC------CCCCc----ceeEEE-ECCEEEEEccccCCCC
Q 012701 246 A-SL-GEIAILAGGSDLEGNILSSAEMYNSE-TQTWKVLPSM------KNPRK----MCSGVF-MDGKFYVIGGIGGSDS 311 (458)
Q Consensus 246 ~-~~-~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~------p~~r~----~~~~~~-~~g~lyv~GG~~~~~~ 311 (458)
+ .- +..||+.+..+ ..+.+||.. +++.+.+... |.+|. .+..++ -+|++|+.+...
T Consensus 92 a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~---- 161 (347)
T 3hfq_A 92 AVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS---- 161 (347)
T ss_dssp EEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT----
T ss_pred EECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC----
Confidence 2 22 34677775322 467778874 3344333211 11111 122222 367777664322
Q ss_pred cccceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCC--CCceEEe
Q 012701 312 KVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKE--RRLWFTI 386 (458)
Q Consensus 312 ~~~~~v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~--~~~W~~v 386 (458)
..+.+||+. +.+...+.......... +..++.. ++ .||+.+...+.+.+|+.. ++++..+
T Consensus 162 ---~~v~~~~~~~~g~~~~~~~~~~~~g~~------------p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 162 ---DKVYVYNVSDAGQLSEQSVLTMEAGFG------------PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp ---TEEEEEEECTTSCEEEEEEEECCTTCC------------EEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ---CEEEEEEECCCCcEEEeeeEEcCCCCC------------CceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 368889887 55555433211111000 0022322 45 488887777788777765 4666554
Q ss_pred c
Q 012701 387 G 387 (458)
Q Consensus 387 ~ 387 (458)
.
T Consensus 227 ~ 227 (347)
T 3hfq_A 227 G 227 (347)
T ss_dssp E
T ss_pred e
Confidence 3
No 41
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.37 E-value=0.003 Score=61.47 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=97.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
..+|+.|+ ..+.+.+||..+++-...-... ..-.+++.. +..||+.++.+ ..+.+||+.+++-.
T Consensus 2 ~~l~vs~~------~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 2 TFAYIANS------ESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVI 67 (391)
T ss_dssp EEEEEEET------TTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEE
T ss_pred CEEEEEcC------CCCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEE
Confidence 35667764 3457899999887653321111 111222222 34677887644 46899999988654
Q ss_pred EcCCCCCCCcceeEEEE-CCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRKMCSGVFM-DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..-..+. .-...++. +++ ||+.+... ..+.+||+.+++-...-.. ..... .++
T Consensus 68 ~~~~~~~--~v~~~~~spdg~~l~~~~~~~-------~~v~v~d~~~~~~~~~~~~--~~~~~--------------~~~ 122 (391)
T 1l0q_A 68 ATVPAGS--SPQGVAVSPDGKQVYVTNMAS-------STLSVIDTTSNTVAGTVKT--GKSPL--------------GLA 122 (391)
T ss_dssp EEEECSS--SEEEEEECTTSSEEEEEETTT-------TEEEEEETTTTEEEEEEEC--SSSEE--------------EEE
T ss_pred EEEECCC--CccceEECCCCCEEEEEECCC-------CEEEEEECCCCeEEEEEeC--CCCcc--------------eEE
Confidence 3322222 22233332 444 66654332 4689999998765432211 11111 233
Q ss_pred EE-CC-EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 358 VV-NN-ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 358 ~~-~~-~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.. ++ .||+.+...+.|.+||..+++....-...... ...++...+..||+.++.. ..+.+|+...
T Consensus 123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~ 189 (391)
T 1l0q_A 123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-----KGIAVTPDGTKVYVANFDS------MSISVIDTVT 189 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE-----EEEEECTTSSEEEEEETTT------TEEEEEETTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCc-----ceEEECCCCCEEEEEeCCC------CEEEEEECCC
Confidence 33 33 57788888899999999888765443221111 1122222244677776532 2466677643
No 42
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.32 E-value=0.04 Score=54.72 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=103.6
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+..++..++.|+. ...+.+||+.+.+-.. .+........+...++..++.|+.+ ..+.+||..+++
T Consensus 245 ~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~ 310 (445)
T 2ovr_B 245 VQYDGRRVVSGAY------DFMVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDVETGN 310 (445)
T ss_dssp EEECSSCEEEEET------TSCEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETT------SCEEEEETTTCC
T ss_pred EEECCCEEEEEcC------CCEEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCC------CeEEEEECCCCC
Confidence 3446666666643 3468889988765322 1111112223333466667777755 458889998875
Q ss_pred EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 278 WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
-... +............++.+++.|+.+ ..+.+||+.+.+-...-..+...... ...+
T Consensus 311 ~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~-------------v~~~ 368 (445)
T 2ovr_B 311 CIHT--LTGHQSLTSGMELKDNILVSGNAD-------STVKIWDIKTGQCLQTLQGPNKHQSA-------------VTCL 368 (445)
T ss_dssp EEEE--ECCCCSCEEEEEEETTEEEEEETT-------SCEEEEETTTCCEEEEECSTTSCSSC-------------EEEE
T ss_pred EEEE--EcCCcccEEEEEEeCCEEEEEeCC-------CeEEEEECCCCcEEEEEccCCCCCCC-------------EEEE
Confidence 3221 111222223344566677777654 35788999776532211111111111 1334
Q ss_pred EECCEEEEEEcCCCeEEEEeCCCCceEE-eccCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 358 VVNNELYAADYADMEVRKYDKERRLWFT-IGRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 358 ~~~~~lyv~gg~~~~v~~yd~~~~~W~~-v~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
..++.+++.|+.++.|.+||..+++... +........ .+.-.++... ++.++++|+.+.. ....+.+|+++.
T Consensus 369 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~la~~~~dg~--~~~~l~v~df~~ 442 (445)
T 2ovr_B 369 QFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS--GGVVWRIRASNTKLVCAVGSRNGT--EETKLLVLDFDV 442 (445)
T ss_dssp EECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG--TCEEEEEEECSSEEEEEEECSSSS--SCCEEEEEECCC
T ss_pred EECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC--CceEEEEEecCCEEEEEEcccCCC--CccEEEEEECCC
Confidence 5578888888889999999998876533 211111111 1111223333 4456667765433 223566777654
No 43
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.29 E-value=0.015 Score=57.42 Aligned_cols=217 Identities=10% Similarity=0.002 Sum_probs=112.1
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC---CCCcee
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN---APRCLF 243 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~ 243 (458)
.++.+|+.+.++..+..++......+ ..+.-++.+|+.++. ...+.+||+.+++........ ......
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v 172 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKS---VRFIDNTRLAIPLLE------DEGMDVLDINSGQTVRLSPPEKYKKKLGFV 172 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCC---CEESSSSEEEEEBTT------SSSEEEEETTTCCEEEECCCHHHHTTCCEE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceE---EEEeCCCeEEEEeCC------CCeEEEEECCCCeEeeecCcccccccCCce
Confidence 57778887765554433322221111 011226788888753 245999999988776543321 111222
Q ss_pred eEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-C-CEEEEEccccCCCCcccceEEE
Q 012701 244 GSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-D-GKFYVIGGIGGSDSKVLTCGEE 319 (458)
Q Consensus 244 ~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~ 319 (458)
.++.+ ++.+|+.++.+ ..+.+||+.+++-...-.. ....-...++. + ..+|+.++.+ ..+.+
T Consensus 173 ~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-------~~i~~ 238 (433)
T 3bws_A 173 ETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWIS-------EDISV 238 (433)
T ss_dssp EEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTT-------TEEEE
T ss_pred eEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCC-------CcEEE
Confidence 22333 67888888754 4689999988654321111 11112223333 3 4566665433 36889
Q ss_pred EECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEc-------CCCeEEEEeCCCCceEEeccCC
Q 012701 320 YDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADY-------ADMEVRKYDKERRLWFTIGRLP 390 (458)
Q Consensus 320 yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg-------~~~~v~~yd~~~~~W~~v~~lp 390 (458)
||+.+.+....-.. ...-. .++.. ++ .|++.+. ..+.|.+||+.+.+-......+
T Consensus 239 ~d~~~~~~~~~~~~--~~~~~--------------~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~ 302 (433)
T 3bws_A 239 IDRKTKLEIRKTDK--IGLPR--------------GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP 302 (433)
T ss_dssp EETTTTEEEEECCC--CSEEE--------------EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE
T ss_pred EECCCCcEEEEecC--CCCce--------------EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC
Confidence 99988765432211 11001 23332 44 4555442 2468999999887544332112
Q ss_pred CccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 391 ERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
... .+.++...++.||+.++... .+.+|+.+.
T Consensus 303 ~~~-----~~~~~~~~g~~l~~~~~~~~------~v~v~d~~~ 334 (433)
T 3bws_A 303 GNK-----RHIVSGNTENKIYVSDMCCS------KIEVYDLKE 334 (433)
T ss_dssp ECE-----EEEEECSSTTEEEEEETTTT------EEEEEETTT
T ss_pred CCc-----ceEEECCCCCEEEEEecCCC------EEEEEECCC
Confidence 111 12222222447888865432 566777653
No 44
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.24 E-value=0.0093 Score=59.34 Aligned_cols=231 Identities=11% Similarity=0.124 Sum_probs=107.0
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC-CCCCCCCcee
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG-MRMNAPRCLF 243 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~~~ 243 (458)
...+..+|..+++-...- .. +...-..+...+..++.|+. ...+.+||..+..-... ..+.......
T Consensus 192 dg~i~vwd~~~~~~~~~~--~~----h~~~v~~l~~~~~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 192 DSTVRVWDVNTGEMLNTL--IH----HCEAVLHLRFNNGMMVTCSK------DRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp TSCEEEEESSSCCEEEEE--CC----CCSCEEEEECCTTEEEEEET------TSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred CCeEEEEECCCCcEEEEE--cC----CCCcEEEEEEcCCEEEEeeC------CCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 345667777766532211 11 11111223334445555543 35688999887643211 1111111222
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECC
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE 323 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 323 (458)
.+...++..++.|+.+ ..+.+||..+++-... +.........+..++.+++.|+.+ ..+..||+.
T Consensus 260 ~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~d-------g~i~iwd~~ 324 (435)
T 1p22_A 260 NVVDFDDKYIVSASGD------RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSD-------NTIRLWDIE 324 (435)
T ss_dssp EEEEEETTEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETT-------SCEEEEETT
T ss_pred EEEEeCCCEEEEEeCC------CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCC-------CeEEEEECC
Confidence 3333355566666654 4688999988753221 111122223344467777777755 357889998
Q ss_pred CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce-------EEeccCCCccCCC
Q 012701 324 TETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW-------FTIGRLPERANSM 396 (458)
Q Consensus 324 ~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W-------~~v~~lp~~~~~~ 396 (458)
+.+-... +....... ..+..++..++.|+.++.|.+||..+..- ..+..+......
T Consensus 325 ~~~~~~~--~~~h~~~v--------------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~- 387 (435)
T 1p22_A 325 CGACLRV--LEGHEELV--------------RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR- 387 (435)
T ss_dssp TCCEEEE--ECCCSSCE--------------EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-
T ss_pred CCCEEEE--EeCCcCcE--------------EEEEecCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-
Confidence 7653221 11111111 23444888888888899999999865430 011111111110
Q ss_pred CcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCCce
Q 012701 397 NGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSANF 449 (458)
Q Consensus 397 ~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~~~ 449 (458)
-.++. .++..++.||.+. .+.+|+....+......+..|...+
T Consensus 388 ---v~~l~-~~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 388 ---VFRLQ-FDEFQIVSSSHDD------TILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ---CCCEE-ECSSCEEECCSSS------EEEEEC-------------------
T ss_pred ---eEEEE-eCCCEEEEEeCCC------EEEEEECCCCCCcccCCCCCCccce
Confidence 11222 2677777777432 5788988765555555544444433
No 45
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.23 E-value=0.057 Score=50.56 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=95.5
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.+++.|+. ...+.+||..+++-... +........++.+ ++.+++.|+.+ ..+.+||..+++-
T Consensus 76 ~~~~l~s~~~------d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~ 141 (312)
T 4ery_A 76 DSNLLVSASD------DKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKC 141 (312)
T ss_dssp TSSEEEEEET------TSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCE
T ss_pred CCCEEEEECC------CCEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEE
Confidence 4555666643 35688999887653221 1111111112222 45666777765 3588899987753
Q ss_pred EEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 279 KVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
... ++........+.+ ++++++.|+.+ ..+..||+.+.+-...- ....... ...
T Consensus 142 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~--~~~~~~~-------------~~~ 197 (312)
T 4ery_A 142 LKT--LPAHSDPVSAVHFNRDGSLIVSSSYD-------GLCRIWDTASGQCLKTL--IDDDNPP-------------VSF 197 (312)
T ss_dssp EEE--ECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEE--CCSSCCC-------------EEE
T ss_pred EEE--ecCCCCcEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeeEE--eccCCCc-------------eEE
Confidence 221 1111112222222 67777777765 35788999876543211 1111111 012
Q ss_pred EEE--CCEEEEEEcCCCeEEEEeCCCCceEEe-ccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 357 AVV--NNELYAADYADMEVRKYDKERRLWFTI-GRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 357 ~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v-~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
+.+ +++.++.++..+.|.+||..+..-... ......... ....+...++.+++.|+.+. .+.+|+...
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~sg~~dg------~i~vwd~~~ 268 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYC---IFANFSVTGGKWIVSGSEDN------LVYIWNLQT 268 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSC---CCEEEECSSSCEEEECCTTS------CEEEEETTT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEE---EEEEEEeCCCcEEEEECCCC------EEEEEECCC
Confidence 222 567777788889999999987653222 111111110 11223334667777777543 366777654
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.017 Score=55.24 Aligned_cols=193 Identities=7% Similarity=0.020 Sum_probs=104.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.+++.|+. ...+.+||..++++..+..+........+..+ + +.+++.|+.+ ..+.+||..++
T Consensus 22 ~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~ 89 (379)
T 3jrp_A 22 YGKRLATCSS------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENG 89 (379)
T ss_dssp SSSEEEEEET------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETT
T ss_pred CCCEEEEEEC------CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCC
Confidence 3445555543 34588888887766655444322222223333 2 5667777765 35888999999
Q ss_pred cEEEcCCCCCCCcceeEEEE--C--CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 277 TWKVLPSMKNPRKMCSGVFM--D--GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
+|..+..+.........+.+ + +.+++.|+.+ ..+.+||+.+..-.....+.......
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~v------------ 150 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIGV------------ 150 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCTTSCCCEEEEECCTTCE------------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-------CcEEEEecCCCCceeeEEecCCCCce------------
Confidence 88766544433333333333 3 6677777654 36788998776321100000000000
Q ss_pred CCEEEEE--------------CCEEEEEEcCCCeEEEEeCCCCc--eEEeccCCCccCCCCcccEEEEEe-C---CEEEE
Q 012701 353 PPLVAVV--------------NNELYAADYADMEVRKYDKERRL--WFTIGRLPERANSMNGWGLAFRAC-G---DRLIV 412 (458)
Q Consensus 353 ~~~~~~~--------------~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~lp~~~~~~~~~~~a~~~~-~---~~lyv 412 (458)
..++.. ++.+++.|+.++.|.+||..+.. |..+..+...... -.+++.. + +.+++
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~----v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 151 -NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp -EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECCCCSSSEEEE
T ss_pred -EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc----EeEEEECCCCCCCCeEE
Confidence 012221 47788888888999999986543 5555444332211 1222222 3 67777
Q ss_pred EcCCCCCCCCeeeEEEeecCCCC
Q 012701 413 IGGPKASGEGFIELNSWVPSEGP 435 (458)
Q Consensus 413 ~GG~~~~~~~~~~~~~~~~~~~~ 435 (458)
.|+.+. .+.+|+.....
T Consensus 226 s~~~dg------~i~iwd~~~~~ 242 (379)
T 3jrp_A 226 SVSQDR------TCIIWTQDNEQ 242 (379)
T ss_dssp EEETTS------CEEEEEESSTT
T ss_pred EEeCCC------EEEEEeCCCCC
Confidence 776543 36677776543
No 47
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.21 E-value=0.044 Score=52.00 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=79.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+.............++++|+.+.+-...-+.. ......+.. ++.+|+.+..+ ..+.+||+.+++-
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~ 123 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEV 123 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCE
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCee
Confidence 4567776532111112567999999887643321111 111223332 35688886633 4789999998874
Q ss_pred EEcCCCCCCC--------cceeEEEE-C-CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCC
Q 012701 279 KVLPSMKNPR--------KMCSGVFM-D-GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPA 348 (458)
Q Consensus 279 ~~~~~~p~~r--------~~~~~~~~-~-g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~ 348 (458)
...-+.+... .-...++. + +.+|+.+... ...+++||+.+.+-...-+..... ..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~-~~-------- 188 (353)
T 3vgz_A 124 KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGGNIKLKTAIQNTGKM-ST-------- 188 (353)
T ss_dssp EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETTTTEEEEEECCCCTT-CC--------
T ss_pred EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCCCCceEEEecCCCCc-cc--------
Confidence 2211111111 11223332 4 4577665221 246899999877643221111111 11
Q ss_pred CcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCceE
Q 012701 349 SAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 349 ~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
.++.. ++ .||+.. ..+.+.+||..+.+-.
T Consensus 189 ------~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 189 ------GLALDSEGKRLYTTN-ADGELITIDTADNKIL 219 (353)
T ss_dssp ------CCEEETTTTEEEEEC-TTSEEEEEETTTTEEE
T ss_pred ------eEEECCCCCEEEEEc-CCCeEEEEECCCCeEE
Confidence 22332 44 566654 4678999999887643
No 48
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.20 E-value=0.13 Score=47.18 Aligned_cols=173 Identities=13% Similarity=-0.015 Sum_probs=95.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+... ..+.|++||+.+..-..+..... ..-++.+.. ++.||+.-.. ...+.++|+....-
T Consensus 47 ~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~~ 113 (267)
T 1npe_A 47 DKVVYWTDI------SEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQR 113 (267)
T ss_dssp TTEEEEEET------TTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSC
T ss_pred CCEEEEEEC------CCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC------CCEEEEEEcCCCCE
Confidence 578998853 34579999998764333221111 122344443 5799998542 35788999875543
Q ss_pred EEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 279 KVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
+.+...... .-...++. +++||+..... ....++++++....-+.+..... ..|..+
T Consensus 114 ~~~~~~~~~-~P~~i~vd~~~g~lyv~~~~~-----~~~~I~~~~~dg~~~~~~~~~~~---------------~~P~gi 172 (267)
T 1npe_A 114 RVLFDTGLV-NPRGIVTDPVRGNLYWTDWNR-----DNPKIETSHMDGTNRRILAQDNL---------------GLPNGL 172 (267)
T ss_dssp EEEECSSCS-SEEEEEEETTTTEEEEEECCS-----SSCEEEEEETTSCCCEEEECTTC---------------SCEEEE
T ss_pred EEEEECCCC-CccEEEEeeCCCEEEEEECCC-----CCcEEEEEecCCCCcEEEEECCC---------------CCCcEE
Confidence 333211111 11233343 68999974321 12468888886544333321100 111245
Q ss_pred EEE--CCEEEEEEcCCCeEEEEeCCCCceEEec-cCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 357 AVV--NNELYAADYADMEVRKYDKERRLWFTIG-RLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 357 ~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
++- ++.||+.....+.|.+||+....-..+. .+.. -.+++..++.||+...
T Consensus 173 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~--------P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 173 TFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY--------PFAVTSYGKNLYYTDW 226 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS--------EEEEEEETTEEEEEET
T ss_pred EEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCC--------ceEEEEeCCEEEEEEC
Confidence 554 5799999988899999999865433322 1111 1334456889999763
No 49
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.18 E-value=0.031 Score=54.95 Aligned_cols=185 Identities=10% Similarity=0.048 Sum_probs=97.0
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceee
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 244 (458)
.+..+|+.+++.....+......+. ..-..++. ++.+|+.++ ....+.+||+.+.+....-... ...-.+
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~s~~------~d~~v~~~d~~~~~~~~~~~~~-~~~~~~ 216 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKL-GFVETISIPEHNELWVSQM------QANAVHVFDLKTLAYKATVDLT-GKWSKI 216 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTC-CEEEEEEEGGGTEEEEEEG------GGTEEEEEETTTCCEEEEEECS-SSSEEE
T ss_pred eEEEEECCCCeEeeecCcccccccC-CceeEEEEcCCCEEEEEEC------CCCEEEEEECCCceEEEEEcCC-CCCeeE
Confidence 4778898887766543321111110 01111233 678888774 3457899999886543221111 111122
Q ss_pred EEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCc-ccceEEEE
Q 012701 245 SASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSK-VLTCGEEY 320 (458)
Q Consensus 245 ~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~-~~~~v~~y 320 (458)
.+.. +..+|+.++.+ ..+.+||+.+++....-.. .......+.. +++.+++++....... .-..+.+|
T Consensus 217 ~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~ 288 (433)
T 3bws_A 217 LLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIY 288 (433)
T ss_dssp EEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEE
T ss_pred EEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEE
Confidence 2222 45677776543 4689999998865443222 2222222222 5655555554311110 12468899
Q ss_pred ECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCce
Q 012701 321 DLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 321 d~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~W 383 (458)
|+.+.+-......+. ... .++.. ++ .+|+.+...+.+.+||..+++-
T Consensus 289 d~~~~~~~~~~~~~~--~~~--------------~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 289 SMDKEKLIDTIGPPG--NKR--------------HIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp ETTTTEEEEEEEEEE--CEE--------------EEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCCCcEEeeccCCC--Ccc--------------eEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 998875433221111 000 22222 34 7888888889999999987653
No 50
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.17 E-value=0.13 Score=48.93 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=113.3
Q ss_pred eEEEEEeccceEEEEecCCCcEEeC-CCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCC----Cc
Q 012701 157 HWVYFSCHLLEWEAFDPIRRRWMHL-PRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILT----NS 229 (458)
Q Consensus 157 ~~l~~~~~~~~~~~yDp~~~~W~~l-~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~ 229 (458)
++|++.. ...+..+|+.+.....+ +.+..+ ..++.- ++.||+... ..+.|+++++.+ ..
T Consensus 2 ~~ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p-------~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 2 AYLFFTN-RHEVRKMTLDRSEYTSLIPNLRNV-------VALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp CEEEEEC-BSSEEEEETTSCCCEEEECSCSSE-------EEEEEETTTTEEEEEET------TTTEEEEEEC--------
T ss_pred CEEEEEC-CCeEEEEECCCcceEehhcCCCce-------EEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcc
Confidence 4555543 45688889888766554 222211 112222 578999863 345799999876 22
Q ss_pred eeeC-C-CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC--CCCCCCcceeEEEE--CCEEE
Q 012701 230 WSSG-M-RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP--SMKNPRKMCSGVFM--DGKFY 301 (458)
Q Consensus 230 W~~~-~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~g~ly 301 (458)
-..+ . .+..| .+.++ .++.||+.-.. ...+.++|+....-+.+. .+..| ...++. ++.||
T Consensus 68 ~~~~~~~~~~~p---~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly 135 (316)
T 1ijq_A 68 YDTVISRDIQAP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMY 135 (316)
T ss_dssp CEEEECSSCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEE
T ss_pred cEEEEeCCCCCc---CEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEE
Confidence 2222 1 22222 34444 47899998432 357889998765433332 22222 233343 68999
Q ss_pred EEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCC
Q 012701 302 VIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 302 v~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~ 379 (458)
+..-. ....|+++++....-+.+... .. ..|..+++- +++||+.....+.|+++|..
T Consensus 136 ~~d~~------~~~~I~~~~~dG~~~~~~~~~--~~-------------~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 136 WTDWG------TPAKIKKGGLNGVDIYSLVTE--NI-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEECS------SSCEEEEEETTSCCEEEEECS--SC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEccC------CCCeEEEEcCCCCCeEEEEEC--CC-------------CCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 87421 124688999865443333211 00 111245554 68999999888999999998
Q ss_pred CCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 380 RRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 380 ~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
...-+.+........ +..++++.++.||+.-
T Consensus 195 g~~~~~~~~~~~~~~----~P~giav~~~~ly~~d 225 (316)
T 1ijq_A 195 GGNRKTILEDEKRLA----HPFSLAVFEDKVFWTD 225 (316)
T ss_dssp SCSCEEEEECTTTTS----SEEEEEEETTEEEEEE
T ss_pred CCceEEEeecCCccC----CcEEEEEECCEEEEEE
Confidence 654444432211111 1234455688999875
No 51
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=97.14 E-value=0.047 Score=49.81 Aligned_cols=148 Identities=14% Similarity=0.018 Sum_probs=81.0
Q ss_pred CCEEEE-EcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLV-FGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv-~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+ ... ..+.+++||+.+........... ..-.+.+.. ++.||+... + ..+.+||+.+...
T Consensus 34 ~g~l~v~~~~------~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 34 AGNVYVTSEG------MYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQ 99 (270)
T ss_dssp TCCEEEEECS------SSCEEEEECC-----EECCCCSC-CSCCCEEECTTCCEEEEET-T------TEEEEECTTCSCC
T ss_pred CCCEEEEccC------CCCcEEEecCCCcccceEeeCCc-CCcceeEECCCCCEEEEcC-C------CEEEEEeCCCceE
Confidence 567888 532 23568889988766554432111 111233333 567888854 2 4689999988765
Q ss_pred EEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 279 KVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..+..... ..-...++. +|+||+..... ..+.+||..+............ .+..++
T Consensus 100 ~~~~~~~~-~~p~~i~~~~~g~l~v~~~~~-------~~i~~~~~~~~~~~~~~~~~~~---------------~p~~i~ 156 (270)
T 1rwi_B 100 TVLPFDGL-NYPEGLAVDTQGAVYVADRGN-------NRVVKLAAGSKTQTVLPFTGLN---------------DPDGVA 156 (270)
T ss_dssp EECCCCSC-SSEEEEEECTTCCEEEEEGGG-------TEEEEECTTCCSCEECCCCSCC---------------SCCCEE
T ss_pred eeeecCCc-CCCcceEECCCCCEEEEECCC-------CEEEEEECCCceeEeeccccCC---------------CceeEE
Confidence 54432111 111223332 67899875432 3578888776654433211100 011344
Q ss_pred EE-CCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 358 VV-NNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 358 ~~-~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
+. +++||+.....+.|.+||+.+..-..
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESNNQVV 185 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTCCEEE
T ss_pred EeCCCCEEEEECCCCEEEEEecCCCceEe
Confidence 44 67899998777899999998766443
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.11 E-value=0.014 Score=54.88 Aligned_cols=184 Identities=13% Similarity=0.132 Sum_probs=96.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++..++.|+. ...+.+||..+++......+........+..+ ++..++.|+.+ ..+.+||..+++.
T Consensus 108 ~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~ 175 (337)
T 1gxr_A 108 DGCTLIVGGE------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTL 175 (337)
T ss_dssp TSSEEEEEES------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEE
T ss_pred CCCEEEEEcC------CCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCce
Confidence 4555555542 35789999988875443322222221222222 45566666654 3588999988764
Q ss_pred EEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 279 KVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
...- .........+.+ ++++++.|+.+ ..+..||+.+.+-...-..+.. -. .+
T Consensus 176 ~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~--v~--------------~~ 230 (337)
T 1gxr_A 176 VRQF--QGHTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLREGRQLQQHDFTSQ--IF--------------SL 230 (337)
T ss_dssp EEEE--CCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECSSC--EE--------------EE
T ss_pred eeee--ecccCceEEEEECCCCCEEEEEecC-------CcEEEEECCCCceEeeecCCCc--eE--------------EE
Confidence 3321 111122222222 66677777654 3688999987653322111111 01 22
Q ss_pred EE-ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeeEEEeecCCC
Q 012701 357 AV-VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSEG 434 (458)
Q Consensus 357 ~~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 434 (458)
+. -++.++++++..+.+.+||..+..-..+....... ..+.. .++++++.|+.+ ..+.+|+....
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~~~d------g~i~~~~~~~~ 297 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCV-------LSLKFAYCGKWFVSTGKD------NLLNAWRTPYG 297 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCE-------EEEEECTTSSEEEEEETT------SEEEEEETTTC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccce-------eEEEECCCCCEEEEecCC------CcEEEEECCCC
Confidence 22 26677788888889999999887643332221111 22222 345666666543 24677776553
No 53
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=97.10 E-value=0.037 Score=53.18 Aligned_cols=78 Identities=8% Similarity=-0.044 Sum_probs=41.8
Q ss_pred CC-EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCC-EEEEEcCCCCCCCCeeeEEEeecCCCCC
Q 012701 360 NN-ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGD-RLIVIGGPKASGEGFIELNSWVPSEGPP 436 (458)
Q Consensus 360 ~~-~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 436 (458)
++ .||+.+...+.|.+||..++++..+..++.......+ ...++. -++ .||+.+.. ....+.+|+.+..+.
T Consensus 221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~-~~~i~~spdg~~l~v~~~~-----~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQG-SGDIHLSPDGKYLYASNRL-----KADGVAIFKVDETNG 294 (361)
T ss_dssp TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCC-EEEEEECTTSSEEEEEECS-----SSCEEEEEEECTTTC
T ss_pred CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCC-cccEEECCCCCEEEEECCC-----CCCEEEEEEEcCCCC
Confidence 44 5788776678999999988877666543221110000 112222 244 56665532 012567777765445
Q ss_pred CceEeec
Q 012701 437 QWNLLAR 443 (458)
Q Consensus 437 ~W~~l~~ 443 (458)
+++.+..
T Consensus 295 ~~~~~~~ 301 (361)
T 3scy_A 295 TLTKVGY 301 (361)
T ss_dssp CEEEEEE
T ss_pred cEEEeeE
Confidence 5555543
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.09 E-value=0.034 Score=53.17 Aligned_cols=232 Identities=11% Similarity=0.104 Sum_probs=110.3
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEE-eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
...+..||..+.++..+..+...... -..+.. -++.+++.|+. ...+.+||..++++.....+.......
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~v 99 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQ---VTGVDWAPDSNRIVTCGT------DRNAYVWTLKGRTWKPTLVILRINRAA 99 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSC---EEEEEEETTTTEEEEEET------TSCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCc---ccEEEEeCCCCEEEEEcC------CCeEEEEECCCCeeeeeEEeecCCCce
Confidence 34566777777765443333211100 011111 24555556543 346889999888875543322112222
Q ss_pred eEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc-EEEcCCCCCC--CcceeEEEE-CCEEEEEccccCCCCcccceE
Q 012701 244 GSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLPSMKNP--RKMCSGVFM-DGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 244 ~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~--r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v 317 (458)
.++.+ ++..+++|+.+ ..+.+||..+.. |........+ ..-.+.+.. ++++++.|+.+ ..+
T Consensus 100 ~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i 166 (372)
T 1k8k_C 100 RCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-------FKC 166 (372)
T ss_dssp EEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT-------SCE
T ss_pred eEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC-------CCE
Confidence 22222 45566666654 346667766654 3322211111 112222222 67777777754 357
Q ss_pred EEEECCCCc---------eEE-------cCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCC
Q 012701 318 EEYDLETET---------WTE-------IPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 318 ~~yd~~~~~---------W~~-------i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~ 379 (458)
..||+.... |.. +..+. .+ ......+.. ++.+++.++.++.|.+||..
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESS----SS----------CGWVHGVCFSANGSRVAWVSHDSTVCLADAD 232 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC----CC----------SSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred EEEEcccccccccccccccccccchhhheEecC----CC----------CCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 788864321 110 00011 00 000022222 56677778888999999998
Q ss_pred CCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeecc
Q 012701 380 RRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARK 444 (458)
Q Consensus 380 ~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~ 444 (458)
+.+-... +....... ..+ ...-++.+++.| .+. .+.+|+......+|..+..+
T Consensus 233 ~~~~~~~--~~~~~~~v--~~~-~~~~~~~~l~~~-~d~------~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 233 KKMAVAT--LASETLPL--LAV-TFITESSLVAAG-HDC------FPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp GTTEEEE--EECSSCCE--EEE-EEEETTEEEEEE-TTS------SCEEEEEETTTTEEEECCCC
T ss_pred CCceeEE--EccCCCCe--EEE-EEecCCCEEEEE-eCC------eEEEEEccCcCceEEEeecc
Confidence 7653222 21111100 112 223466766666 322 35677775544567665443
No 55
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.06 E-value=0.087 Score=49.48 Aligned_cols=206 Identities=12% Similarity=0.111 Sum_probs=98.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcC--CCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSIL--TNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
+..||+.+.. ...+.+|++. +++++.+..++....-...+.. +..||+.+..+ ..+.+||...+
T Consensus 49 g~~l~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~ 116 (343)
T 1ri6_A 49 KRYLYVGVRP------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA------GNVSVTRLEDG 116 (343)
T ss_dssp SSEEEEEETT------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT------TEEEEEEEETT
T ss_pred CCEEEEeecC------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC------CeEEEEECCCC
Confidence 3456666532 2567787776 7787765444322221222222 34566665422 45788887422
Q ss_pred c-EEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECCC-CceEEcC--CCCCCCCCCCCCCCCCCCc
Q 012701 277 T-WKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLET-ETWTEIP--NMSPARGGAARGTEMPASA 350 (458)
Q Consensus 277 ~-W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~i~--~~p~~r~~~~~~~~~~~~~ 350 (458)
. .+.+...+........++. ++ .||+.+... ..+.+||+.+ .+...+. .........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~---------- 179 (343)
T 1ri6_A 117 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ-------DRICLFTVSDDGHLVAQDPAEVTTVEGAG---------- 179 (343)
T ss_dssp EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG-------TEEEEEEECTTSCEEEEEEEEEECSTTCC----------
T ss_pred ccccccccccCCCCceEEEECCCCCEEEEecCCC-------CEEEEEEecCCCceeeecccccccCCCCC----------
Confidence 2 2222222222222223332 44 566654232 3588899887 6665332 111110001
Q ss_pred CCCCEEEEE-CC-EEEEEEcCCCeEEEEeCC--CCceEE---eccCCCccCCCCcccEEEEEe--CCEEEEEcCCCCCCC
Q 012701 351 EAPPLVAVV-NN-ELYAADYADMEVRKYDKE--RRLWFT---IGRLPERANSMNGWGLAFRAC--GDRLIVIGGPKASGE 421 (458)
Q Consensus 351 ~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~--~~~W~~---v~~lp~~~~~~~~~~~a~~~~--~~~lyv~GG~~~~~~ 421 (458)
+..++.. ++ .||+.+...+.+.+||.. +..+.. +..++...... .....++.. +..||+.+...
T Consensus 180 --~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~s~dg~~l~v~~~~~---- 252 (343)
T 1ri6_A 180 --PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT-RWAADIHITPDGRHLYACDRTA---- 252 (343)
T ss_dssp --EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC-CCEEEEEECTTSSEEEEEETTT----
T ss_pred --cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc-CCccceEECCCCCEEEEEecCC----
Confidence 0022222 34 577887777899999984 455543 33344321100 011122222 34677665321
Q ss_pred CeeeEEEeecCCCCCCceEeecc
Q 012701 422 GFIELNSWVPSEGPPQWNLLARK 444 (458)
Q Consensus 422 ~~~~~~~~~~~~~~~~W~~l~~~ 444 (458)
..+.+|+.+..+.+++.+...
T Consensus 253 --~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 253 --SLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp --TEEEEEEECTTSCCEEEEEEE
T ss_pred --CEEEEEEEcCCCCceEEeeee
Confidence 256777776544556665443
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.05 E-value=0.024 Score=53.21 Aligned_cols=178 Identities=8% Similarity=0.012 Sum_probs=91.4
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
...+..||..+.+......+..... .-..++. ++..++.|+. ...+.+||..+++....-...... -
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~------dg~v~~~d~~~~~~~~~~~~~~~~-i 186 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDSKVCFSCCS------DGNIAVWDLHNQTLVRQFQGHTDG-A 186 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSSS----CEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSC-E
T ss_pred CCcEEEEECCCCCcceeeecccCCC----ceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCceeeeeecccCc-e
Confidence 3456777877765332221111110 0011222 4455555543 346899999887643321111111 1
Q ss_pred eeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEE
Q 012701 243 FGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEY 320 (458)
Q Consensus 243 ~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~y 320 (458)
.+.+.. ++..++.|+.+ ..+.+||..+.+-...-..+ ......+. -+++++++|+.+ ..+..|
T Consensus 187 ~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~-------~~i~~~ 251 (337)
T 1gxr_A 187 SCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES-------SNVEVL 251 (337)
T ss_dssp EEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETT-------SCEEEE
T ss_pred EEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCC-------CcEEEE
Confidence 122222 55566666644 46889999887533221111 11222222 367777777654 357889
Q ss_pred ECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 321 DLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 321 d~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
|+.+..-..+...... -. .++.. ++++++.++..+.+.+||..+++-.
T Consensus 252 ~~~~~~~~~~~~~~~~--v~--------------~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 252 HVNKPDKYQLHLHESC--VL--------------SLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp ETTSSCEEEECCCSSC--EE--------------EEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCCCCeEEEcCCccc--ee--------------EEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 9987764333211110 00 22222 5677778888899999999887654
No 57
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.05 E-value=0.0078 Score=58.44 Aligned_cols=192 Identities=10% Similarity=0.032 Sum_probs=94.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++..++.|+. ...|.+||..+++-...-...... -.+++.. ++.+++.|+.+ ..+.+||..+.+-
T Consensus 150 dg~~l~sgs~------dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~ 216 (357)
T 4g56_B 150 DGTQAVSGGK------DFSVKVWDLSQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGED------GRILLWDTRKPKP 216 (357)
T ss_dssp SSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETT------SCEEECCTTSSSC
T ss_pred CCCEEEEEeC------CCeEEEEECCCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccC------CceEEEECCCCce
Confidence 4556666643 346889999887543221111111 1122222 33567777765 3578889887653
Q ss_pred EEcCCCCCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 279 KVLPSMKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
...............+.+ ++++++.|+.+ ..+..||+.+.+-.. .+....... ..
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d-------~~i~~wd~~~~~~~~--~~~~~~~~v-------------~~ 274 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDET-------GNVSLVNIKNPDSAQ--TSAVHSQNI-------------TG 274 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESS-------SCEEEEESSCGGGCE--EECCCSSCE-------------EE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecc-------cceeEEECCCCcEeE--EEeccceeE-------------EE
Confidence 322222222222223332 45677777654 347889987653111 111100000 02
Q ss_pred EEEE-CC-EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE--eCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 356 VAVV-NN-ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA--CGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 356 ~~~~-~~-~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
++.. ++ ++++.|+.++.|.+||..+++-... +... +.-.+++. .++.+++.||.+. .+.+|+.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--~~H~-----~~V~~vafsP~d~~~l~s~s~Dg------~v~iW~~ 341 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--LSHR-----DFVTGVAWSPLDHSKFTTVGWDH------KVLHHHL 341 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--CCCS-----SCEEEEEECSSSTTEEEEEETTS------CEEEEEC
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--CCCC-----CCEEEEEEeCCCCCEEEEEcCCC------eEEEEEC
Confidence 2222 34 5666777888999999988764433 2111 11122332 3677888887543 4678887
Q ss_pred CCCCCCceE
Q 012701 432 SEGPPQWNL 440 (458)
Q Consensus 432 ~~~~~~W~~ 440 (458)
......-+.
T Consensus 342 ~~~~~~~~~ 350 (357)
T 4g56_B 342 PSEGRTENL 350 (357)
T ss_dssp C--------
T ss_pred CCCCccccc
Confidence 554333333
No 58
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.00 E-value=0.13 Score=47.32 Aligned_cols=172 Identities=6% Similarity=-0.020 Sum_probs=93.5
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.||+... ....+++||+ +++............-.+.+.. ++.+|+.... ...+.+||+ +++..
T Consensus 109 ~g~l~v~~~------~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 109 NGDIWFTEM------NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ------NNAIGRITE-SGDIT 174 (299)
T ss_dssp TSCEEEEET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEE
T ss_pred CCCEEEEec------CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC------CCEEEEEcC-CCcEE
Confidence 578888752 2346899998 6666543211111222333333 5688886421 256899999 77776
Q ss_pred EcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
... .+..........+ +|+||+.... ...+.+||+ ++++..+. .+...... ..++
T Consensus 175 ~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~-~~~~~~~~-------------~~i~ 231 (299)
T 2z2n_A 175 EFK-IPTPASGPVGITKGNDDALWFVEII-------GNKIGRITT-SGEITEFK-IPTPNARP-------------HAIT 231 (299)
T ss_dssp EEE-CSSTTCCEEEEEECTTSSEEEEETT-------TTEEEEECT-TCCEEEEE-CSSTTCCE-------------EEEE
T ss_pred Eee-CCCCCCcceeEEECCCCCEEEEccC-------CceEEEECC-CCcEEEEE-CCCCCCCc-------------eeEE
Confidence 542 1111122223333 5788887432 246889999 77776542 12111111 1333
Q ss_pred EE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 358 VV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 358 ~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
.- ++.||+.....+.|.+||+ +++...+. ++..... -.+++..++.||+...
T Consensus 232 ~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-~~~~~~~----~~~i~~~~g~l~v~~~ 284 (299)
T 2z2n_A 232 AGAGIDLWFTEWGANKIGRLTS-NNIIEEYP-IQIKSAE----PHGICFDGETIWFAME 284 (299)
T ss_dssp ECSTTCEEEEETTTTEEEEEET-TTEEEEEE-CSSSSCC----EEEEEECSSCEEEEET
T ss_pred ECCCCCEEEeccCCceEEEECC-CCceEEEe-CCCCCCc----cceEEecCCCEEEEec
Confidence 32 6789998766789999999 45554442 2221111 1222236778888753
No 59
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.99 E-value=0.01 Score=55.13 Aligned_cols=110 Identities=7% Similarity=-0.142 Sum_probs=76.2
Q ss_pred eeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEEC
Q 012701 243 FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDL 322 (458)
Q Consensus 243 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~ 322 (458)
.+....++.||+..|..+ .+.++|+++++=..-- ++..-+....+..+++||++.... +.+++||+
T Consensus 58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-------~~v~V~D~ 123 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-------GLLFTWSG 123 (268)
T ss_dssp EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-------CEEEEEET
T ss_pred ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-------CEEEEEEC
Confidence 355566899999988653 3889999998743222 444334445667789999985433 57899999
Q ss_pred CCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 323 ETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 323 ~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
++.+-.. .++.+..+. .++.-+++||+..| .+.+..+|+++.+-
T Consensus 124 ~Tl~~~~--ti~~~~eGw--------------GLt~Dg~~L~vSdG-s~~l~~iDp~T~~v 167 (268)
T 3nok_A 124 MPPQRER--TTRYSGEGW--------------GLCYWNGKLVRSDG-GTMLTFHEPDGFAL 167 (268)
T ss_dssp TTTEEEE--EEECSSCCC--------------CEEEETTEEEEECS-SSEEEEECTTTCCE
T ss_pred CcCcEEE--EEeCCCcee--------------EEecCCCEEEEECC-CCEEEEEcCCCCeE
Confidence 8865432 222223344 56777889999986 78999999998653
No 60
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.98 E-value=0.013 Score=54.67 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=74.0
Q ss_pred eeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEE
Q 012701 243 FGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 243 ~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 321 (458)
++.+..+ +.||+..|..+ .+.+.++|+.+++=..--+++........+..+++||+..-. .+.+.+||
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-------~~~v~viD 92 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-------KNIGFIYD 92 (266)
T ss_dssp EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-------CSEEEEEE
T ss_pred ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-------CCEEEEEE
Confidence 4566555 79999977432 267999999999854433343333444566778899998543 25689999
Q ss_pred CCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 322 LETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 322 ~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+.+.+= +..++.+ ..+. .++.-++++|+..| .+.+.++|+++.+
T Consensus 93 ~~t~~v--~~~i~~g~~~g~--------------glt~Dg~~l~vs~g-s~~l~viD~~t~~ 137 (266)
T 2iwa_A 93 RRTLSN--IKNFTHQMKDGW--------------GLATDGKILYGSDG-TSILYEIDPHTFK 137 (266)
T ss_dssp TTTTEE--EEEEECCSSSCC--------------EEEECSSSEEEECS-SSEEEEECTTTCC
T ss_pred CCCCcE--EEEEECCCCCeE--------------EEEECCCEEEEECC-CCeEEEEECCCCc
Confidence 987642 2223222 2233 45554667998875 6899999998865
No 61
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.90 E-value=0.32 Score=46.93 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=119.3
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEE---eCCEEEEEcCCCCCcCccceEEEEEcCCCceee
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA---VGTELLVFGRELTAHHISHVIYRYSILTNSWSS 232 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 232 (458)
++++++.. ...+..+++.......+..-... ...++ .++.||+.-- ..+.|+++++.+..-+.
T Consensus 44 ~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~-------~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 44 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-------AIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEE 109 (349)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCEEEEECSCSC-------EEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEE
T ss_pred CceeEeec-ccceEEEeCCCCeeEEeecCCCc-------eEEEEEeccccEEEEEec------cCCceEEEecCCCCceE
Confidence 45666543 45688888887766554321111 11233 3578998852 34579999998776544
Q ss_pred CC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEc
Q 012701 233 GM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP--SMKNPRKMCSGVFM--DGKFYVIG 304 (458)
Q Consensus 233 ~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~g~lyv~G 304 (458)
+. .+..| .+.++ .++.||+.-.. ...++++++....-+.+. .+..| ...++. ++.||+.-
T Consensus 110 ~~~~~~~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td 177 (349)
T 3v64_C 110 VVSTGLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTD 177 (349)
T ss_dssp EECSSCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEE
T ss_pred EEeCCCCCc---cEEEEecCCCeEEEEcCC------CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEec
Confidence 32 22222 23344 37899998442 357899998765433332 22222 223343 68899873
Q ss_pred cccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 305 GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 305 G~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
-. ....|+++++....-+.+..- .. ..|..+++- +++||+.....+.|+++|+....
T Consensus 178 ~~------~~~~I~r~~~dG~~~~~~~~~--~~-------------~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 178 WG------NTPRIEASSMDGSGRRIIADT--HL-------------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236 (349)
T ss_dssp CS------SSCEEEEEETTSCSCEESCCS--SC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cC------CCCEEEEEeCCCCCcEEEEEC--CC-------------CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc
Confidence 21 125689999876544443210 00 112255654 78999999888999999987654
Q ss_pred eEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 383 WFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 383 W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
=+.+...... +-.++++.++.||+.--
T Consensus 237 ~~~~~~~~~~------~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 237 RKAVISQGLP------HPFAITVFEDSLYWTDW 263 (349)
T ss_dssp CEEEECSSCS------SEEEEEEETTEEEEEET
T ss_pred eEEEEeCCCC------CceEEEEECCEEEEecC
Confidence 3333221111 12344457889999853
No 62
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.90 E-value=0.17 Score=46.45 Aligned_cols=200 Identities=9% Similarity=0.006 Sum_probs=105.9
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
..+..||+. ++...++. +.... ....+++ ++.||+... ..+.+++||+. +++...........-.
T Consensus 41 ~~v~~~~~~-~~~~~~~~-~~~~~----~~~~i~~~~~g~l~v~~~------~~~~v~~~d~~-g~~~~~~~~~~~~~~~ 107 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEV-PTPDA----KVMCLIVSSLGDIWFTEN------GANKIGKLSKK-GGFTEYPLPQPDSGPY 107 (300)
T ss_dssp TEEEEECTT-SCEEEEEC-SSTTC----CEEEEEECTTSCEEEEET------TTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CeEEEECCC-CceEEEEC-CCCCC----cceeEEECCCCCEEEEec------CCCeEEEECCC-CCeEEecCCCCCCCCc
Confidence 467788888 66654321 11100 1112333 567888752 23568999988 6665432111112223
Q ss_pred eEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEE
Q 012701 244 GSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEY 320 (458)
Q Consensus 244 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~y 320 (458)
+.+.. ++.+|+.... ...+.+||+. ++..... ++........... +|+||+.... ...+.+|
T Consensus 108 ~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-------~~~i~~~ 172 (300)
T 2qc5_A 108 GITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-------NNSIGRI 172 (300)
T ss_dssp EEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-------TTEEEEE
T ss_pred cceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-------CCeEEEE
Confidence 33333 5788887532 2468889988 6655432 2211222223333 5788886432 1358899
Q ss_pred ECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcc
Q 012701 321 DLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGW 399 (458)
Q Consensus 321 d~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~ 399 (458)
|+ +++...+. ++...... ..++.- ++.||+.....+.|.+||+ ++.+..+. ++.... .
T Consensus 173 ~~-~g~~~~~~-~~~~~~~~-------------~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~----~ 231 (300)
T 2qc5_A 173 TN-TGKLEEYP-LPTNAAAP-------------VGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-IPTPNA----R 231 (300)
T ss_dssp CT-TCCEEEEE-CSSTTCCE-------------EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTC----C
T ss_pred CC-CCcEEEee-CCCCCCCc-------------ceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-CCCCCC----C
Confidence 98 66666543 11111111 133333 6789998776778999999 66666543 222111 1
Q ss_pred cEEEEE-eCCEEEEEc
Q 012701 400 GLAFRA-CGDRLIVIG 414 (458)
Q Consensus 400 ~~a~~~-~~~~lyv~G 414 (458)
-.+++. -+++||+..
T Consensus 232 ~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 232 PHAITAGKNSEIWFTE 247 (300)
T ss_dssp EEEEEECSTTCEEEEE
T ss_pred ceEEEECCCCCEEEec
Confidence 122333 256788876
No 63
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.88 E-value=0.021 Score=55.14 Aligned_cols=184 Identities=10% Similarity=0.053 Sum_probs=93.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
++..++.|+. ...|.+||..+++-... +..-.....++.+ +..+++.|+.+ ..+.+||..+.+
T Consensus 138 dg~~l~sgs~------d~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~ 203 (344)
T 4gqb_B 138 SGTQAVSGSK------DICIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRCPK 203 (344)
T ss_dssp TSSEEEEEET------TSCEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTSSS
T ss_pred CCCEEEEEeC------CCeEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeeccc------cccccccccccc
Confidence 5566666653 34688999988753221 1111111122222 33577788766 358889998876
Q ss_pred EEEcCCCCCCCcce-eEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 278 WKVLPSMKNPRKMC-SGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 278 W~~~~~~p~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
-...-......... +.+.. ++++++.|+.+ ..|.+||+.+.+- +..+.. .... -.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d-------g~v~~wd~~~~~~--~~~~~~-h~~~------------v~ 261 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN-------GTVSLVDTKSTSC--VLSSAV-HSQC------------VT 261 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETT-------SEEEEEESCC--C--CEEEEC-CSSC------------EE
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccC-------CcEEEEECCCCcE--EEEEcC-CCCC------------EE
Confidence 43221111111112 22222 56677877755 3578899876531 111110 0111 00
Q ss_pred EEEEE-CC-EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE--eCCEEEEEcCCCCCCCCeeeEEEee
Q 012701 355 LVAVV-NN-ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA--CGDRLIVIGGPKASGEGFIELNSWV 430 (458)
Q Consensus 355 ~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~--~~~~lyv~GG~~~~~~~~~~~~~~~ 430 (458)
.++.. ++ .+++.|+.++.|.+||..+++-..... +.+.-.+++. .+..|++.||.+. .+..|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~-------H~~~V~~v~~sp~~~~llas~s~D~------~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQA-------HRDFVRDATWSPLNHSLLTTVGWDH------QVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECC-------CSSCEEEEEECSSSTTEEEEEETTS------CEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcC-------CCCCEEEEEEeCCCCeEEEEEcCCC------eEEEEE
Confidence 22222 34 566778888999999998876433221 1111122222 3456777787543 467787
Q ss_pred cCC
Q 012701 431 PSE 433 (458)
Q Consensus 431 ~~~ 433 (458)
...
T Consensus 329 v~~ 331 (344)
T 4gqb_B 329 VPT 331 (344)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 64
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.88 E-value=0.15 Score=50.16 Aligned_cols=206 Identities=15% Similarity=0.081 Sum_probs=117.6
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEE---eCCEEEEEcCCCCCcCccceEEEEEcCCCceee
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA---VGTELLVFGRELTAHHISHVIYRYSILTNSWSS 232 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~---~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 232 (458)
++++++.. ...+..+|+.......+...... ...++ .++.||+.-- ..+.|+++++.+...+.
T Consensus 87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~-------~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-------AIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEE 152 (386)
T ss_dssp CCEEEEEC-BSCEEEECTTSCCCEEEECSCSC-------EEEEEEETTTTEEEEEET------TTTEEEEEETTSCCEEE
T ss_pred cceeEeec-CccceeeccCCCcEEEEecCCCc-------cEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCcEE
Confidence 55666643 46788889887765544321111 11233 2578998852 34579999998876655
Q ss_pred CC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEc
Q 012701 233 GM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP--SMKNPRKMCSGVFM--DGKFYVIG 304 (458)
Q Consensus 233 ~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~g~lyv~G 304 (458)
+. .+..| .+.++ .++.||+.-.. ...++++++....-+.+. .+..| ...++. ++.||+.-
T Consensus 153 ~~~~~~~~p---~glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td 220 (386)
T 3v65_B 153 VVSTGLESP---GGLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTD 220 (386)
T ss_dssp EECSSCSCC---CCEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEE
T ss_pred EEeCCCCCc---cEEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEec
Confidence 42 22222 23333 37899998442 357888888765433332 12222 223343 68899873
Q ss_pred cccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 305 GIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 305 G~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
-. ....|+++++....-+.+..- .. ..|..+++- +++||+.....+.|+++|.....
T Consensus 221 ~~------~~~~I~r~~~dG~~~~~~~~~--~~-------------~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 221 WG------NTPRIEASSMDGSGRRIIADT--HL-------------FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 279 (386)
T ss_dssp CS------SSCEEEEEETTSCSCEEEECS--SC-------------SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS
T ss_pred cC------CCCEEEEEeCCCCCcEEEEEC--CC-------------CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe
Confidence 21 135789999875443333210 00 111245654 78999999888999999987644
Q ss_pred eEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 383 WFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 383 W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
-+.+...... +-.++++.++.||+.-
T Consensus 280 ~~~~~~~~~~------~P~giav~~~~ly~td 305 (386)
T 3v65_B 280 RKAVISQGLP------HPFAITVFEDSLYWTD 305 (386)
T ss_dssp CEEEECSSCS------SEEEEEEETTEEEEEE
T ss_pred eEEEEECCCC------CceEEEEECCEEEEee
Confidence 3333221111 1234455788999985
No 65
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=96.87 E-value=0.27 Score=45.21 Aligned_cols=177 Identities=12% Similarity=0.040 Sum_probs=93.5
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC---C-CCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN---A-PRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~-~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
++.||+... ....+.+||+.......+.... . ...-.+.+. -++.||+.+... ...+.+||..
T Consensus 40 ~g~l~v~~~------~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-----~~~i~~~d~~ 108 (286)
T 1q7f_A 40 QNDIIVADT------NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-----THQIQIYNQY 108 (286)
T ss_dssp TCCEEEEEG------GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-----GCEEEEECTT
T ss_pred CCCEEEEEC------CCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-----CCEEEEECCC
Confidence 467888753 2356889998755444433211 0 112234444 267899986421 2568899965
Q ss_pred CCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 275 TQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 275 t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
...-..+..... ..-...++ -+|+|||..... ..+.+||+.......+..... ... +
T Consensus 109 g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~~g~~~~~~~~~~~-~~~-------------p 166 (286)
T 1q7f_A 109 GQFVRKFGATIL-QHPRGVTVDNKGRIIVVECKV-------MRVIIFDQNGNVLHKFGCSKH-LEF-------------P 166 (286)
T ss_dssp SCEEEEECTTTC-SCEEEEEECTTSCEEEEETTT-------TEEEEECTTSCEEEEEECTTT-CSS-------------E
T ss_pred CcEEEEecCccC-CCceEEEEeCCCCEEEEECCC-------CEEEEEcCCCCEEEEeCCCCc-cCC-------------c
Confidence 444333322111 11122222 367898875432 468889987654444321100 000 1
Q ss_pred CEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcC
Q 012701 354 PLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGG 415 (458)
Q Consensus 354 ~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG 415 (458)
..+++- ++.||+.+...+.|.+||+..+....+..-.. .. ...+++. -+++|||...
T Consensus 167 ~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~-~~----~p~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGI-TN----YPIGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTT-SC----SEEEEEECTTCCEEEEEC
T ss_pred EEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCc-cC----CCcEEEECCCCCEEEEeC
Confidence 133333 57999998778899999987665555432110 00 1122332 3568888764
No 66
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.81 E-value=0.1 Score=49.68 Aligned_cols=70 Identities=14% Similarity=-0.030 Sum_probs=42.1
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEE
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRK 375 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~ 375 (458)
++++++.|+.+ ..+.+||+.+.+-...- ....... ..++. -++.+++.| ..+.+.+
T Consensus 213 ~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~--~~~~~~v-------------~~~~~~~~~~~l~~~-~d~~i~i 269 (372)
T 1k8k_C 213 NGSRVAWVSHD-------STVCLADADKKMAVATL--ASETLPL-------------LAVTFITESSLVAAG-HDCFPVL 269 (372)
T ss_dssp SSSEEEEEETT-------TEEEEEEGGGTTEEEEE--ECSSCCE-------------EEEEEEETTEEEEEE-TTSSCEE
T ss_pred CCCEEEEEeCC-------CEEEEEECCCCceeEEE--ccCCCCe-------------EEEEEecCCCEEEEE-eCCeEEE
Confidence 66666776654 35788998776532211 1111010 02333 377777666 7888999
Q ss_pred EeCCC--CceEEeccC
Q 012701 376 YDKER--RLWFTIGRL 389 (458)
Q Consensus 376 yd~~~--~~W~~v~~l 389 (458)
||..+ ++|..+..+
T Consensus 270 ~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 270 FTYDSAAGKLSFGGRL 285 (372)
T ss_dssp EEEETTTTEEEECCCC
T ss_pred EEccCcCceEEEeecc
Confidence 99988 889877544
No 67
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.76 E-value=0.5 Score=46.68 Aligned_cols=173 Identities=9% Similarity=0.075 Sum_probs=91.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+++.|+. ...+.+||..+.+-...-....... .+++. -++..++.|+.+ ..+.+||..+++-.
T Consensus 279 ~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 279 HGNIVVSGSY------DNTLIVWDVAQMKCLYILSGHTDRI-YSTIYDHERKRCISASMD------TTIRIWDLENGELM 345 (464)
T ss_dssp ETTEEEEEET------TSCEEEEETTTTEEEEEECCCSSCE-EEEEEETTTTEEEEEETT------SCEEEEETTTTEEE
T ss_pred CCCEEEEEeC------CCeEEEEECCCCcEEEEecCCCCCE-EEEEEcCCCCEEEEEeCC------CcEEEEECCCCcEE
Confidence 3444555543 3468999998765422211111111 22222 245566677755 45889999877532
Q ss_pred EcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE
Q 012701 280 VLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV 359 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~ 359 (458)
. .+.........+..+++.++.|+.+ ..+.+||+.+..-..... ...... ......
T Consensus 346 ~--~~~~h~~~v~~~~~~~~~l~s~s~d-------g~v~vwd~~~~~~~~~~~--~~~~~~-------------~~~~~~ 401 (464)
T 3v7d_B 346 Y--TLQGHTALVGLLRLSDKFLVSAAAD-------GSIRGWDANDYSRKFSYH--HTNLSA-------------ITTFYV 401 (464)
T ss_dssp E--EECCCSSCEEEEEECSSEEEEEETT-------SEEEEEETTTCCEEEEEE--CTTCCC-------------EEEEEE
T ss_pred E--EEeCCCCcEEEEEEcCCEEEEEeCC-------CcEEEEECCCCceeeeec--CCCCcc-------------EEEEEe
Confidence 2 2222223334455667777777765 358889998755221111 111111 023445
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
++.+++.|+ .+.|.+||..+++-......+... .-.++...++.+++.++.
T Consensus 402 ~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~-----~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 402 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDAD-----QIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCS-----EEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCcEEehhhccCCC-----cEEEEEecCCEEEEEEEe
Confidence 777777776 789999999988654321122111 113333446666666653
No 68
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.75 E-value=0.15 Score=47.65 Aligned_cols=200 Identities=11% Similarity=0.112 Sum_probs=96.4
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+++.|+ ....+.+||..++.|..+..+........++.+ + +.+++.|+.+ ..+.+||..++.
T Consensus 67 g~~l~s~s------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCS------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEE------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSS
T ss_pred CCEEEEEc------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCC
Confidence 45666664 345788999998887655433221122222333 1 4566677755 457778877652
Q ss_pred -EEEcCCCCCCCcc-eeEEE--------------ECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCC
Q 012701 278 -WKVLPSMKNPRKM-CSGVF--------------MDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGG 339 (458)
Q Consensus 278 -W~~~~~~p~~r~~-~~~~~--------------~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~ 339 (458)
+... .+...... .+... .++++++.|+.+ ..+..||..+.. |..+..+..-...
T Consensus 135 ~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-------~~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 135 TTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp CBCCE-EEECCSSCEEEEEECCCC------------CCEEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred ceeee-eeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC-------CcEEEEEEcCCCceEEEEEEecCCCCc
Confidence 2110 00000000 11111 124577777765 246667765433 5433322211110
Q ss_pred CCCCCCCCCCcCCCCEEEEE-C---CEEEEEEcCCCeEEEEeCCCC--ceEEeccCCCccCCCCcccEEEE-EeCCEEEE
Q 012701 340 AARGTEMPASAEAPPLVAVV-N---NELYAADYADMEVRKYDKERR--LWFTIGRLPERANSMNGWGLAFR-ACGDRLIV 412 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~---~~lyv~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv 412 (458)
. ..++.. + +.+++.++.++.|.+||..+. .|.... +..... ...-.++. ..++.+++
T Consensus 207 V-------------~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~-~~~~~~--~~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 207 V-------------RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL-LKEEKF--PDVLWRASWSLSGNVLA 270 (297)
T ss_dssp E-------------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE-SSSSCC--SSCEEEEEECSSSCCEE
T ss_pred e-------------EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee-eecccC--CCcEEEEEECCCCCEEE
Confidence 0 022222 2 477778888899999998763 464321 100000 01111222 23566777
Q ss_pred EcCCCCCCCCeeeEEEeecCCCCCCceEeecc
Q 012701 413 IGGPKASGEGFIELNSWVPSEGPPQWNLLARK 444 (458)
Q Consensus 413 ~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~ 444 (458)
.||.+. .+.+|+... ...|..+..+
T Consensus 271 s~~~D~------~v~lw~~~~-~g~w~~~~~~ 295 (297)
T 2pm7_B 271 LSGGDN------KVTLWKENL-EGKWEPAGEV 295 (297)
T ss_dssp EEETTS------CEEEEEECT-TSCEEEC---
T ss_pred EEcCCC------cEEEEEECC-CCcEEecccc
Confidence 776432 467888754 2579887654
No 69
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=96.73 E-value=0.056 Score=50.73 Aligned_cols=211 Identities=9% Similarity=0.042 Sum_probs=106.6
Q ss_pred ccceEEEEecCCCcEEeCCCCCCCccccccCceEE-EeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC--CC
Q 012701 164 HLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESL-AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA--PR 240 (458)
Q Consensus 164 ~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r 240 (458)
....++.||+.++....+.. +... ..++ .-++.||+.. .+.+++||+.+++++.+..... +.
T Consensus 33 ~~~~i~~~d~~~~~~~~~~~-~~~~------~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~~~~~~~~ 97 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQVQRVTM-DAPV------SSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLATVDNDKKN 97 (297)
T ss_dssp TTTEEEEEETTTCCEEEEEC-SSCE------EEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEECCTTCSS
T ss_pred CCCEEEEEECCCCcEEEEeC-CCce------EEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEecCCCCCC
Confidence 34578899998876543321 1111 1112 2255666542 2468999999998877644321 22
Q ss_pred ceeeEEEe--CCEEEEEeccCCC-----CCccCeEEEEeCCCCcEEEcC-CCCCCCcceeEEEE-CC-EEEEEccccCCC
Q 012701 241 CLFGSASL--GEIAILAGGSDLE-----GNILSSAEMYNSETQTWKVLP-SMKNPRKMCSGVFM-DG-KFYVIGGIGGSD 310 (458)
Q Consensus 241 ~~~~~~~~--~~~lyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~ 310 (458)
.......+ ++++|+..-.... ......++++|+.. +...+. .+.. -...++. ++ .||+.....
T Consensus 98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~---pngi~~spdg~~lyv~~~~~--- 170 (297)
T 3g4e_A 98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDI---SNGLDWSLDHKIFYYIDSLS--- 170 (297)
T ss_dssp EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESB---EEEEEECTTSCEEEEEEGGG---
T ss_pred CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecccc---ccceEEcCCCCEEEEecCCC---
Confidence 22222222 5677774321110 01235688888753 333321 1111 1122222 44 588875432
Q ss_pred CcccceEEEEEC--CCCceEE---cCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 311 SKVLTCGEEYDL--ETETWTE---IPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 311 ~~~~~~v~~yd~--~~~~W~~---i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
..|++||. .+..... +..++.... .+..+++ -+|.||+.....+.|.+||+++.+..
T Consensus 171 ----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~-------------~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 171 ----YSVDAFDYDLQTGQISNRRSVYKLEKEEQ-------------IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp ----TEEEEEEECTTTCCEEEEEEEEECCGGGC-------------EEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred ----CcEEEEeccCCCCcccCcEEEEECCCCCC-------------CCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 46788875 4554321 111111100 1113444 36799999877788999999977655
Q ss_pred EeccCCCccCCCCcccEEEE-EeCCEEEEEcCCC
Q 012701 385 TIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPK 417 (458)
Q Consensus 385 ~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~ 417 (458)
..-.+|.... ..+++. .-++.|||.....
T Consensus 234 ~~i~~p~~~~----t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 234 QTVKLPVDKT----TSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEECSSSBE----EEEEEESGGGCEEEEEEBCT
T ss_pred EEEECCCCCc----eEEEEeCCCCCEEEEEcCCc
Confidence 4444553322 112221 1125899987543
No 70
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=96.73 E-value=0.34 Score=44.35 Aligned_cols=200 Identities=9% Similarity=-0.006 Sum_probs=105.7
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCce
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCL 242 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~ 242 (458)
..+..||+. +.+.......... ....+++ ++.||+... ....+++||+. ++.+... ++ ....-
T Consensus 36 ~~v~~~d~~-~~~~~~~~~~~~~-----~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~-g~~~~~~-~~~~~~~~ 101 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLPTPDA-----KVMCLTISSDGEVWFTEN------AANKIGRITKK-GIIKEYT-LPNPDSAP 101 (299)
T ss_dssp TEEEEECTT-CCEEEEECSSTTC-----CEEEEEECTTSCEEEEET------TTTEEEEECTT-SCEEEEE-CSSTTCCE
T ss_pred CcEEEEcCC-CCeEEecCCcccC-----ceeeEEECCCCCEEEeCC------CCCeEEEECCC-CcEEEEe-CCCcCCCc
Confidence 457788988 6665543211111 1112333 567887752 23468899986 4554433 22 11222
Q ss_pred eeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEE
Q 012701 243 FGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEY 320 (458)
Q Consensus 243 ~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~y 320 (458)
.+.+.. ++.||+.... ...+.+||+ +++............-...+.. +|++|+.... ...+.+|
T Consensus 102 ~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~ 167 (299)
T 2z2n_A 102 YGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-------NNAIGRI 167 (299)
T ss_dssp EEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-------TTEEEEE
T ss_pred eeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-------CCEEEEE
Confidence 333433 5788887542 256889999 6665544211111112223332 6788886421 2468899
Q ss_pred ECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcc
Q 012701 321 DLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGW 399 (458)
Q Consensus 321 d~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~ 399 (458)
|+ +.+...+. .+...... ..++.. ++.||+.....+.|.+||+ +++...+. ++.... .
T Consensus 168 ~~-~g~~~~~~-~~~~~~~~-------------~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~----~ 226 (299)
T 2z2n_A 168 TE-SGDITEFK-IPTPASGP-------------VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-IPTPNA----R 226 (299)
T ss_dssp CT-TCCEEEEE-CSSTTCCE-------------EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTC----C
T ss_pred cC-CCcEEEee-CCCCCCcc-------------eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE-CCCCCC----C
Confidence 99 77776542 11111111 133333 5789998876789999999 77776542 221111 1
Q ss_pred cEEEEE-eCCEEEEEc
Q 012701 400 GLAFRA-CGDRLIVIG 414 (458)
Q Consensus 400 ~~a~~~-~~~~lyv~G 414 (458)
-.+++. -+++||+..
T Consensus 227 ~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTE 242 (299)
T ss_dssp EEEEEECSTTCEEEEE
T ss_pred ceeEEECCCCCEEEec
Confidence 123333 256788875
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=96.72 E-value=0.048 Score=51.61 Aligned_cols=200 Identities=14% Similarity=0.207 Sum_probs=101.0
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCC-
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQ- 276 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~- 276 (458)
+.+++.|+. ...+.+||+.++.|.....+........++.+ + +.+++.|+.+ ..+.+||..+.
T Consensus 71 ~~~l~s~s~------D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~ 138 (316)
T 3bg1_A 71 GNILASCSY------DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEG 138 (316)
T ss_dssp SSCEEEEET------TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSS
T ss_pred CCEEEEEEC------CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCC
Confidence 455555543 35688999988877554332211111222222 2 4566777765 34777887765
Q ss_pred cEEEcCCCCCCCcceeEEEE-------------------CCEEEEEccccCCCCcccceEEEEECCC-CceEEcCCCCCC
Q 012701 277 TWKVLPSMKNPRKMCSGVFM-------------------DGKFYVIGGIGGSDSKVLTCGEEYDLET-ETWTEIPNMSPA 336 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~~-------------------~g~lyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~i~~~p~~ 336 (458)
.|.....+.........+.. ++++++.|+.+ ..+..||..+ ..|..+..+..-
T Consensus 139 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-------~~v~lWd~~~~~~~~~~~~l~~h 211 (316)
T 3bg1_A 139 QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD-------NLIKLWKEEEDGQWKEEQKLEAH 211 (316)
T ss_dssp CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTT-------SBCCEEEECTTSCEEEEECCBCC
T ss_pred CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCC-------CeEEEEEeCCCCccceeeecccC
Confidence 57543322211111111111 13456666654 2355677753 456655433211
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEE-C----CEEEEEEcCCCeEEEEeCCC---CceEE--eccCCCccCCCCcccEEEE-E
Q 012701 337 RGGAARGTEMPASAEAPPLVAVV-N----NELYAADYADMEVRKYDKER---RLWFT--IGRLPERANSMNGWGLAFR-A 405 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~-~----~~lyv~gg~~~~v~~yd~~~---~~W~~--v~~lp~~~~~~~~~~~a~~-~ 405 (458)
... . ..++.. + +.+++.++.++.|.+||..+ ..|.. +...... -.+++ .
T Consensus 212 -~~~-----V-------~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-------v~~v~~s 271 (316)
T 3bg1_A 212 -SDW-----V-------RDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-------VWHVSWS 271 (316)
T ss_dssp -SSC-----E-------EEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSC-------EEEEEEC
T ss_pred -CCc-----e-------EEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCc-------EEEEEEc
Confidence 111 0 011211 2 26777788889999999876 34431 2111111 12222 2
Q ss_pred eCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeeccCCC
Q 012701 406 CGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLARKQSA 447 (458)
Q Consensus 406 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~ 447 (458)
.++.+++.||.+. .+.+|+.... ..|..+..+..+
T Consensus 272 p~g~~las~~~D~------~v~lw~~~~~-g~~~~~~~~~~~ 306 (316)
T 3bg1_A 272 ITANILAVSGGDN------KVTLWKESVD-GQWVCISDVNKG 306 (316)
T ss_dssp TTTCCEEEEESSS------CEEEEEECTT-SCEEEEEECC--
T ss_pred CCCCEEEEEcCCC------eEEEEEECCC-CcEEEeeeccCC
Confidence 3566777776432 4678887643 589999887753
No 72
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.72 E-value=0.095 Score=48.87 Aligned_cols=189 Identities=13% Similarity=0.027 Sum_probs=102.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc-
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT- 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 277 (458)
.+++++.|. ..+.++++|+.|++ |+.-..-. .......+.-++.|++.+ -..+..||+ +++
T Consensus 4 ~~~~lv~~~------~~~~v~~~d~~tG~~~w~~~~~~~-~~~~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~ 67 (276)
T 3no2_A 4 PQHLLVGGS------GWNKIAIINKDTKEIVWEYPLEKG-WECNSVAATKAGEILFSY--------SKGAKMITR-DGRE 67 (276)
T ss_dssp CCEEEEECT------TCSEEEEEETTTTEEEEEEECCTT-CCCCEEEECTTSCEEEEC--------BSEEEEECT-TSCE
T ss_pred CCcEEEeeC------CCCEEEEEECCCCeEEEEeCCCcc-CCCcCeEECCCCCEEEeC--------CCCEEEECC-CCCE
Confidence 356666764 34568888987775 65432211 122223333467777732 146899999 554
Q ss_pred -EEEcCCCCCCCcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCc-eEEc-C-CCCCC--CCCCCCCCCCCCCc
Q 012701 278 -WKVLPSMKNPRKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEI-P-NMSPA--RGGAARGTEMPASA 350 (458)
Q Consensus 278 -W~~~~~~p~~r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i-~-~~p~~--r~~~~~~~~~~~~~ 350 (458)
|+.-.. .....+++. ..+|++++..... ...++.+|+..+. |+.- . ..+.. ....
T Consensus 68 ~W~~~~~--~~~~~~~~~~~~dG~~lv~~~~~------~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~---------- 129 (276)
T 3no2_A 68 LWNIAAP--AGCEMQTARILPDGNALVAWCGH------PSTILEVNMKGEVLSKTEFETGIERPHAQFRQ---------- 129 (276)
T ss_dssp EEEEECC--TTCEEEEEEECTTSCEEEEEEST------TEEEEEECTTSCEEEEEEECCSCSSGGGSCSC----------
T ss_pred EEEEcCC--CCccccccEECCCCCEEEEecCC------CCEEEEEeCCCCEEEEEeccCCCCcccccccC----------
Confidence 775432 111222333 3478887764421 1357788875432 4321 1 11100 0001
Q ss_pred CCCCEEEEECCEEEEEEcCCCeEEEEeCCCC-ceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEe
Q 012701 351 EAPPLVAVVNNELYAADYADMEVRKYDKERR-LWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 351 ~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~-~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~ 429 (458)
.....++.+++.....+.|..||++.+ .|+.-.. ... + .+....++.++|++... ..+.++
T Consensus 130 ----v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~--~~~-----~-~~~~~~~g~~~v~~~~~------~~v~~~ 191 (276)
T 3no2_A 130 ----INKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLS--GTP-----F-SSAFLDNGDCLVACGDA------HCFVQL 191 (276)
T ss_dssp ----CEECTTSCEEEEETTTTEEEEECTTSCEEEEEECS--SCC-----C-EEEECTTSCEEEECBTT------SEEEEE
T ss_pred ----ceECCCCCEEEEecCCCEEEEECCCCCEEEEEECC--CCc-----c-ceeEcCCCCEEEEeCCC------CeEEEE
Confidence 223447778888777789999999843 3554322 111 1 23334577888877532 246677
Q ss_pred ecCCCCCCceEe
Q 012701 430 VPSEGPPQWNLL 441 (458)
Q Consensus 430 ~~~~~~~~W~~l 441 (458)
+++.+.-.|+.-
T Consensus 192 d~~tG~~~w~~~ 203 (276)
T 3no2_A 192 NLESNRIVRRVN 203 (276)
T ss_dssp CTTTCCEEEEEE
T ss_pred eCcCCcEEEEec
Confidence 777666778765
No 73
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.72 E-value=0.11 Score=49.26 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=92.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++..++.|+. ...+.+||..++.-...-... ...-.+++. -+++.++.|+.+ ..+.+||..+++-.
T Consensus 133 dg~~l~~g~~------dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~ 199 (321)
T 3ow8_A 133 DSQYLATGTH------VGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAID------GIINIFDIATGKLL 199 (321)
T ss_dssp TSSEEEEECT------TSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE
T ss_pred CCCEEEEEcC------CCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEE
Confidence 4555666643 356788888776532211111 111112222 255667777765 35888999887532
Q ss_pred EcCCCCCCCc-ceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRK-MCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~-~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
.. +..... -.+.++ -++++++.|+.+ ..+.+||+.+...... +.. .... -..++
T Consensus 200 ~~--~~~h~~~v~~l~~spd~~~l~s~s~d-------g~i~iwd~~~~~~~~~--~~~-h~~~------------v~~~~ 255 (321)
T 3ow8_A 200 HT--LEGHAMPIRSLTFSPDSQLLVTASDD-------GYIKIYDVQHANLAGT--LSG-HASW------------VLNVA 255 (321)
T ss_dssp EE--ECCCSSCCCEEEECTTSCEEEEECTT-------SCEEEEETTTCCEEEE--ECC-CSSC------------EEEEE
T ss_pred EE--EcccCCceeEEEEcCCCCEEEEEcCC-------CeEEEEECCCcceeEE--EcC-CCCc------------eEEEE
Confidence 21 111111 112222 367777877765 3578899987654321 110 1111 00222
Q ss_pred EE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeeEEEeec
Q 012701 358 VV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVP 431 (458)
Q Consensus 358 ~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~ 431 (458)
.. ++.+++.++.++.|.+||..+.+- +..+..... .-.++.. .++..++.||.+. .+.+|+.
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~------~i~vwd~ 319 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTRTC--VHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQ------EIHIYDC 319 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSS----CEEEEEECTTSSEEEEEETTC------CEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCEE--EEEEcCCCC----cEEEEEECCCCCEEEEEeCCC------eEEEEeC
Confidence 22 567777888889999999987653 222221111 1122222 3456667776432 4667764
No 74
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.71 E-value=0.32 Score=45.65 Aligned_cols=204 Identities=12% Similarity=0.040 Sum_probs=106.1
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
...++.||+.... ......+... ..+++ ++.|||..... ....+++||+.+++.+.+..++..+..
T Consensus 52 ~~~I~~~d~~g~~-~~~~~~~~~p-------~gia~~~dG~l~vad~~~----~~~~v~~~d~~~g~~~~~~~~~~~~~~ 119 (306)
T 2p4o_A 52 VGEIVSITPDGNQ-QIHATVEGKV-------SGLAFTSNGDLVATGWNA----DSIPVVSLVKSDGTVETLLTLPDAIFL 119 (306)
T ss_dssp TTEEEEECTTCCE-EEEEECSSEE-------EEEEECTTSCEEEEEECT----TSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred CCeEEEECCCCce-EEEEeCCCCc-------eeEEEcCCCcEEEEeccC----CcceEEEEcCCCCeEEEEEeCCCcccc
Confidence 3467888887642 2211122111 11333 56788875221 113588999988888766555444443
Q ss_pred eeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCc---EEEcCC----CCC-CCcceeEEEE-CCEEEEEccccCCCCc
Q 012701 243 FGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQT---WKVLPS----MKN-PRKMCSGVFM-DGKFYVIGGIGGSDSK 312 (458)
Q Consensus 243 ~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~----~p~-~r~~~~~~~~-~g~lyv~GG~~~~~~~ 312 (458)
.+.+.. ++.+|+.-. ....++++|+.++. |..-+. .+. .......... ++.||+.--
T Consensus 120 ~g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------- 186 (306)
T 2p4o_A 120 NGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT------- 186 (306)
T ss_dssp EEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-------
T ss_pred CcccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC-------
Confidence 344333 557777632 13578999988652 221111 111 1112222233 457888732
Q ss_pred ccceEEEEECCC-Cce---EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 313 VLTCGEEYDLET-ETW---TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 313 ~~~~v~~yd~~~-~~W---~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
..+.|++||+.. .+. ..+..+.. +..+++- +|.||+.....+.|.+||+. .+...+.
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~~~~-----------------P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~ 248 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVEQTN-----------------IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIA 248 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEESCC-----------------CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEeccCC-----------------CCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEe
Confidence 235789999875 221 11111111 1134443 77899998777899999986 4444443
Q ss_pred cCCCccCCCCcccEEEEEe-----CCEEEEEcC
Q 012701 388 RLPERANSMNGWGLAFRAC-----GDRLIVIGG 415 (458)
Q Consensus 388 ~lp~~~~~~~~~~~a~~~~-----~~~lyv~GG 415 (458)
..+.+.. +-.+++.. ++.|||...
T Consensus 249 ~~~~~~~----~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 249 QAEQGVI----GSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CGGGTCT----TEEEEEECCSTTTTTEEEEEEC
T ss_pred ecccccC----CceEEEEecccCCCCEEEEECC
Confidence 3332211 11233332 268999864
No 75
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.66 E-value=0.47 Score=46.75 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=115.8
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCC----
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTN---- 228 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~---- 228 (458)
++++++.. ...+..+|+....+..+.+-... ...+++ ++.||+.-- ..+.|+++++...
T Consensus 83 ~~~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~-------~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~ 148 (400)
T 3p5b_L 83 IAYLFFTN-RHEVRKMTLDRSEYTSLIPNLRN-------VVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVS 148 (400)
T ss_dssp SCEEEEEE-TTEEEEECTTSCSCEEEECSCSC-------EEEEEEETTTTEEEEEET------TTTEEEEEEC------C
T ss_pred cceeEEec-cceeEEEccCCcceeEeccccCc-------ceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCC
Confidence 44555543 46788888888776654321111 112332 578998852 3356888988652
Q ss_pred ceeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC--CCCCCcceeEEEE--CCEEEE
Q 012701 229 SWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS--MKNPRKMCSGVFM--DGKFYV 302 (458)
Q Consensus 229 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r~~~~~~~~--~g~lyv 302 (458)
....+.... ...-.+.++ .++.||+.-.. ...++++++....-+.+.. +..| ...++. ++.||+
T Consensus 149 ~~~~~~~~~-~~~p~glavD~~~~~lY~~d~~------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~ 218 (400)
T 3p5b_L 149 SYDTVISRD-IQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYW 218 (400)
T ss_dssp CCEEEECSS-CSCEEEEEEETTTTEEEEEETT------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEE
T ss_pred cceEEEeCC-CCCcccEEEEecCCceEEEECC------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEE
Confidence 122221111 111234444 37899999432 3578899998776554432 2222 123332 688998
Q ss_pred EccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCC
Q 012701 303 IGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 303 ~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~ 380 (458)
.--. ....|+++++....=+.+.. ... ..|..+++- +++||+.......|+++|.+.
T Consensus 219 td~~------~~~~I~~~~~dG~~~~~~~~--~~l-------------~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 219 TDWG------TPAKIKKGGLNGVDIYSLVT--ENI-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EECS------SSCCEEEEETTSCSCEEEEC--SSC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EeCC------CCCEEEEEeCCCCccEEEEE--CCC-------------CceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 7311 12358888887543333211 000 111245555 789999998889999999986
Q ss_pred CceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 381 RLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 381 ~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
..-+.+...+.... +..++++.++.||+.-
T Consensus 278 ~~~~~~~~~~~~l~----~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 278 GNRKTILEDEKRLA----HPFSLAVFEDKVFWTD 307 (400)
T ss_dssp CCCEEEEECSSTTS----SEEEEEEETTEEEEEE
T ss_pred CccEEEEeCCCCCC----CCEEEEEeCCEEEEec
Confidence 55444432211111 2345666889999885
No 76
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.069 Score=57.27 Aligned_cols=186 Identities=12% Similarity=0.144 Sum_probs=93.2
Q ss_pred eEEEEEeccceEEEEecCCCcEEe-CCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCC
Q 012701 157 HWVYFSCHLLEWEAFDPIRRRWMH-LPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMR 235 (458)
Q Consensus 157 ~~l~~~~~~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 235 (458)
.++.+......+..||..+++... +.....+. ......-++..+++|+. ...+.+||..+++....-.
T Consensus 26 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~------dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV-----RAGKFIARKNWIIVGSD------DFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-----EEEEEEGGGTEEEEEET------TSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEEecCCCcE-----EEEEEeCCCCEEEEEeC------CCeEEEEECCCCcEEEEEe
Confidence 344444444567778877765432 11111111 00111224555556643 3578999998876543211
Q ss_pred CCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC-cEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCC
Q 012701 236 MNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ-TWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDS 311 (458)
Q Consensus 236 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~ 311 (458)
-. ...-.+.+.. ++..++.|+.+ ..+.+||..++ .....-. .......+++.. ++.+++.|+.+
T Consensus 95 ~~-~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d---- 162 (814)
T 3mkq_A 95 AH-PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLD---- 162 (814)
T ss_dssp CC-SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETT----
T ss_pred cC-CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCC----
Confidence 11 1111122222 44455566644 46888998876 2222111 011112233333 46677777755
Q ss_pred cccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE---CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 312 KVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV---NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 312 ~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~---~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
..+.+||+.+..-...-......... .++.. ++.+++.|+..+.|.+||..++.
T Consensus 163 ---g~v~vwd~~~~~~~~~~~~~~~~~v~--------------~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 163 ---RTVKVWSLGQSTPNFTLTTGQERGVN--------------YVDYYPLPDKPYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp ---SEEEEEETTCSSCSEEEECCCTTCCC--------------EEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred ---CeEEEEECCCCcceeEEecCCCCCEE--------------EEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 36888998654321110001101111 23332 67788888888999999988765
No 77
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.64 E-value=0.54 Score=45.55 Aligned_cols=215 Identities=13% Similarity=0.029 Sum_probs=106.6
Q ss_pred cceEEEEecCCCcEEeCC-CCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCC
Q 012701 165 LLEWEAFDPIRRRWMHLP-RMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APR 240 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~-~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r 240 (458)
...+..||..+.+-...- ..... -..++. ++.+++.|+. ...+.+||..+.+-.. .+. ...
T Consensus 118 dg~i~iwd~~~~~~~~~~~~h~~~-------v~~~~~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~--~~~~h~~ 182 (420)
T 3vl1_A 118 EGDIKVLDSNFNLQREIDQAHVSE-------ITKLKFFPSGEALISSSQ------DMQLKIWSVKDGSNPR--TLIGHRA 182 (420)
T ss_dssp TSCEEEECTTSCEEEEETTSSSSC-------EEEEEECTTSSEEEEEET------TSEEEEEETTTCCCCE--EEECCSS
T ss_pred CCCEEEEeCCCcceeeecccccCc-------cEEEEECCCCCEEEEEeC------CCeEEEEeCCCCcCce--EEcCCCC
Confidence 345677887766543321 11111 111222 4555556543 3568999988754211 111 111
Q ss_pred ceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cCCCCCCCcc-eeEE----------------------E
Q 012701 241 CLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPRKM-CSGV----------------------F 295 (458)
Q Consensus 241 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~-~~~~----------------------~ 295 (458)
.-.+++.. ++..++.|+.+ ..+.+||..+++-.. +......... ...+ .
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp CEEEEEEETTTTEEEEEETT------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 11122222 45566677755 358889988775322 1111001111 1111 1
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEEcCCCeE
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAADYADMEV 373 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~gg~~~~v 373 (458)
-++++++.|+.+ ..+.+||+.+.+-...- +...... ...++.. ++. +++.|+..+.|
T Consensus 257 ~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~--~~~~~~~------------v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 257 TYGKYVIAGHVS-------GVITVHNVFSKEQTIQL--PSKFTCS------------CNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp CTTEEEEEEETT-------SCEEEEETTTCCEEEEE--CCTTSSC------------EEEEEECSSCTTEEEEEETTSEE
T ss_pred CCCCEEEEEcCC-------CeEEEEECCCCceeEEc--ccccCCC------------ceeEEEeCCCCCEEEEEeCCCeE
Confidence 267777777755 34788999876532211 1111111 0022222 444 77888888999
Q ss_pred EEEeCCCCce--EEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 374 RKYDKERRLW--FTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 374 ~~yd~~~~~W--~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.+||..+..- ..+..-.... -..+...++.+++.|+.+ ..+.+|+...
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~l~s~~~d------~~v~iw~~~~ 365 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTP------INNVYFAAGALFVSSGFD------TSIKLDIISD 365 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSC------EEEEEEETTEEEEEETTT------EEEEEEEECC
T ss_pred EEEEcCCCcCchhhhhccCCCC------ceEEEeCCCCEEEEecCC------ccEEEEeccC
Confidence 9999987542 2222111111 123444578888888743 3567787654
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.043 Score=58.99 Aligned_cols=200 Identities=11% Similarity=0.142 Sum_probs=101.3
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+++.|+. ...+.+||..+++|..+..+........++.+ + +.+++.|+.+ ..+.+||..++.
T Consensus 67 ~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~ 134 (753)
T 3jro_A 67 GTILASCSY------DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENG 134 (753)
T ss_dssp CSEEEEEET------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSS
T ss_pred CCEEEEEeC------CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCC
Confidence 555666643 35689999999988666544332222333333 2 5677777755 468888887762
Q ss_pred EEEcCCCCCCCcc-eeEEEE--------------CCEEEEEccccCCCCcccceEEEEECCCC--ceEEcCCCCCCCCCC
Q 012701 278 WKVLPSMKNPRKM-CSGVFM--------------DGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNMSPARGGA 340 (458)
Q Consensus 278 W~~~~~~p~~r~~-~~~~~~--------------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~i~~~p~~r~~~ 340 (458)
-.....+...... .+.+.. ++.+++.|+.+ ..+..||+.+. .+..+..+.......
T Consensus 135 ~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~~~~~h~~~V 207 (753)
T 3jro_A 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (753)
T ss_dssp CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT-------SCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC-------CeEEEEeccCCcccceeeeeecCCCCcE
Confidence 1110000011111 112221 36677777755 24677777654 333332221111111
Q ss_pred CCCCCCCCCcCCCCEEEEE-C---CEEEEEEcCCCeEEEEeCCCCc--eEE-eccCCCccCCCCcccEEEEEeCCEEEEE
Q 012701 341 ARGTEMPASAEAPPLVAVV-N---NELYAADYADMEVRKYDKERRL--WFT-IGRLPERANSMNGWGLAFRACGDRLIVI 413 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~---~~lyv~gg~~~~v~~yd~~~~~--W~~-v~~lp~~~~~~~~~~~a~~~~~~~lyv~ 413 (458)
.+++.. + +.+++.|+..+.|.+||..+.. +.. +......... -+.+++ ..++.+++.
T Consensus 208 -------------~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--v~~l~~-spdg~~l~s 271 (753)
T 3jro_A 208 -------------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV--LWRASW-SLSGNVLAL 271 (753)
T ss_dssp -------------EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSC--CCCEEE-CTTTCCEEE
T ss_pred -------------EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCc--eEEEEE-cCCCCEEEE
Confidence 022222 3 7888888889999999988753 111 1111111110 011222 235677777
Q ss_pred cCCCCCCCCeeeEEEeecCCCCCCceEeec
Q 012701 414 GGPKASGEGFIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 414 GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 443 (458)
||.+. .+.+|+.+. ...|..+..
T Consensus 272 ~s~Dg------~I~vwd~~~-~~~~~~~~~ 294 (753)
T 3jro_A 272 SGGDN------KVTLWKENL-EGKWEPAGE 294 (753)
T ss_dssp ECSSS------CEECCBCCS-SSCCBCCCC
T ss_pred EcCCC------EEEEEecCC-CCCcccccc
Confidence 76532 367777653 245665544
No 79
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=96.63 E-value=0.18 Score=46.94 Aligned_cols=203 Identities=8% Similarity=0.084 Sum_probs=97.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe----CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL----GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
+++.++.|+. ...+.+||..+++.+.+..+..-.....++.+ ++.+++.|+.+ ..+.+||..++
T Consensus 20 ~g~~las~s~------D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~~ 87 (297)
T 2pm7_B 20 YGKRMATCSS------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEENG 87 (297)
T ss_dssp TSSEEEEEET------TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSSS
T ss_pred CCCEEEEEeC------CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCCC
Confidence 4455556643 34688888876544333222211111122222 25677777765 46888999988
Q ss_pred cEEEcCCCCCCCcceeEEEE--C--CEEEEEccccCCCCcccceEEEEECCCCc-eEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 277 TWKVLPSMKNPRKMCSGVFM--D--GKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
.|..+..+.........+.+ + +.+++.|+.+ ..+..||+.+.. +.... + ...... ......
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-------~~v~~wd~~~~~~~~~~~-~-~~h~~~-----v~~~~~ 153 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-------GKVSVVEFKENGTTSPII-I-DAHAIG-----VNSASW 153 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEEBCSSSCBCCEE-E-ECCSSC-----EEEEEE
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-------CcEEEEEecCCCceeeee-e-ecccCc-----cceEee
Confidence 77654332222222222322 2 5677777655 357778876542 21000 0 000000 000000
Q ss_pred CCC-------EEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEeccCCCccCCCCcccEEEEEe-C---CEEEEEcCCCC
Q 012701 352 APP-------LVAVVNNELYAADYADMEVRKYDKERRL--WFTIGRLPERANSMNGWGLAFRAC-G---DRLIVIGGPKA 418 (458)
Q Consensus 352 ~~~-------~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~lp~~~~~~~~~~~a~~~~-~---~~lyv~GG~~~ 418 (458)
.+. .....++++++.|+.++.|.+||..+.. |..+..+..... +-.++... + +.+++.|+.+.
T Consensus 154 ~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp CCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTS
T ss_pred cCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECCC
Confidence 000 0000124577888888899999886643 655544432211 11222222 2 36777776532
Q ss_pred CCCCeeeEEEeecCCCCCCce
Q 012701 419 SGEGFIELNSWVPSEGPPQWN 439 (458)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~W~ 439 (458)
.+.+|+.+.....|.
T Consensus 230 ------~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 230 ------TCIIWTQDNEQGPWK 244 (297)
T ss_dssp ------CEEEEEESSTTSCCE
T ss_pred ------cEEEEEeCCCCCccc
Confidence 467787765444453
No 80
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.073 Score=51.60 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=69.5
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE-EcCCCCCCCcceeE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK-VLPSMKNPRKMCSG 293 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~p~~r~~~~~ 293 (458)
....+.+||..+.+-...-... ...-.+++.. ++.+++.|+.+ ..+.+||..+.+-. .+.. ........
T Consensus 225 ~~g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~--~~~~i~~~ 295 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFYG--HSQSIVSA 295 (425)
T ss_dssp GGGCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEECC--CSSCEEEE
T ss_pred CCCeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEecC--CCccEEEE
Confidence 3457999999876432111111 1111222222 45566666644 35888888775421 1111 11122233
Q ss_pred EEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCC
Q 012701 294 VFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADM 371 (458)
Q Consensus 294 ~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~ 371 (458)
+.. ++ +++.|+.+ ..+.+||+.+.+-...-.. ..... ..++.. ++.+++.++..+
T Consensus 296 ~~~~~~-~l~~~~~d-------~~i~i~d~~~~~~~~~~~~--~~~~i-------------~~~~~s~~~~~l~~~~~dg 352 (425)
T 1r5m_A 296 SWVGDD-KVISCSMD-------GSVRLWSLKQNTLLALSIV--DGVPI-------------FAGRISQDGQKYAVAFMDG 352 (425)
T ss_dssp EEETTT-EEEEEETT-------SEEEEEETTTTEEEEEEEC--TTCCE-------------EEEEECTTSSEEEEEETTS
T ss_pred EECCCC-EEEEEeCC-------CcEEEEECCCCcEeEeccc--CCccE-------------EEEEEcCCCCEEEEEECCC
Confidence 333 55 66666544 3688899987653221111 01111 022222 567788888888
Q ss_pred eEEEEeCCCCc
Q 012701 372 EVRKYDKERRL 382 (458)
Q Consensus 372 ~v~~yd~~~~~ 382 (458)
.|.+||..+..
T Consensus 353 ~i~i~~~~~~~ 363 (425)
T 1r5m_A 353 QVNVYDLKKLN 363 (425)
T ss_dssp CEEEEECHHHH
T ss_pred eEEEEECCCCc
Confidence 99999987654
No 81
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.61 E-value=0.4 Score=43.92 Aligned_cols=171 Identities=8% Similarity=0.004 Sum_probs=92.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-CceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-RCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+... ....+.+||+. ++..... ++.. ..-.+.+.. ++.+|+.... ...+.+||+. +++
T Consensus 30 ~g~l~v~~~------~~~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~------~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 30 DGKVWFTQH------KANKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENG------ANKIGKLSKK-GGF 94 (300)
T ss_dssp TSCEEEEET------TTTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETT------TTEEEEECTT-SCE
T ss_pred CCCEEEEcC------CCCeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecC------CCeEEEECCC-CCe
Confidence 567888752 23568899988 6665532 1211 122233332 4678887432 2568899998 776
Q ss_pred EEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 279 KVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
...........-+..++. +|++|+..... ..+.+||+. .+...+. ++...... ..++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-------~~i~~~~~~-g~~~~~~-~~~~~~~~-------------~~i~ 152 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNG-------DRIGKLTAD-GTIYEYD-LPNKGSYP-------------AFIT 152 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTT-------TEEEEECTT-SCEEEEE-CSSTTCCE-------------EEEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCC-------CeEEEECCC-CCEEEcc-CCCCCCCc-------------eeEE
Confidence 644321111222233332 68898874322 357889987 6655432 12111111 1333
Q ss_pred E-ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe-CCEEEEEc
Q 012701 358 V-VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GDRLIVIG 414 (458)
Q Consensus 358 ~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~lyv~G 414 (458)
. -+++||+.....+.|++||+ +++...+. ++.... ...+++.. ++.||+..
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-~~~~~~----~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEEYP-LPTNAA----APVGITSGNDGALWFVE 205 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEE-CSSTTC----CEEEEEECTTSSEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEEee-CCCCCC----CcceEEECCCCCEEEEc
Confidence 3 25779998866789999999 66666543 222111 11223332 56788765
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.58 E-value=0.094 Score=51.17 Aligned_cols=193 Identities=9% Similarity=0.063 Sum_probs=97.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceee-----CCCCC-CCCceeeEEEe-CC-EEEEEeccCCCCCccCeEEEEe
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSS-----GMRMN-APRCLFGSASL-GE-IAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-----~~~~p-~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd 272 (458)
++.+++.|+. ...+.+||..++.... +..+. ....-.+++.. ++ .+++.|+.+ ..+.+||
T Consensus 93 ~~~~l~s~s~------dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSE------DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWD 160 (402)
T ss_dssp CTTEEEEEET------TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEE
T ss_pred CCCEEEEEeC------CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEE
Confidence 5566677653 3568999998875421 11111 11111122222 32 577777765 3588999
Q ss_pred CCCCcEEEcCC-CCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCC
Q 012701 273 SETQTWKVLPS-MKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPAS 349 (458)
Q Consensus 273 ~~t~~W~~~~~-~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~~~~ 349 (458)
..+++....-. ......-.+.+.. ++++++.|+.+ ..+.+||+.+.+-...- .........
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~--------- 224 (402)
T 2aq5_A 161 VGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-------KRVRVIEPRKGTVVAEKDRPHEGTRPV--------- 224 (402)
T ss_dssp TTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-------SEEEEEETTTTEEEEEEECSSCSSSCC---------
T ss_pred CCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-------CcEEEEeCCCCceeeeeccCCCCCcce---------
Confidence 99886543211 1111112222222 67777777654 36889999886533211 111110011
Q ss_pred cCCCCEEEE-ECCEEEEEE---cCCCeEEEEeCCCCce-EEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCee
Q 012701 350 AEAPPLVAV-VNNELYAAD---YADMEVRKYDKERRLW-FTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFI 424 (458)
Q Consensus 350 ~~~~~~~~~-~~~~lyv~g---g~~~~v~~yd~~~~~W-~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~ 424 (458)
.++. -++++++.| ...+.|.+||..+..- .....+..... -...++...+..|++.|+.+.
T Consensus 225 -----~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~g~~dg------ 290 (402)
T 2aq5_A 225 -----HAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG---VLLPFFDPDTNIVYLCGKGDS------ 290 (402)
T ss_dssp -----EEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS---CEEEEEETTTTEEEEEETTCS------
T ss_pred -----EEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc---eeEEEEcCCCCEEEEEEcCCC------
Confidence 2333 367888887 5678999999877542 11112211111 011222222445666775332
Q ss_pred eEEEeecCCCC
Q 012701 425 ELNSWVPSEGP 435 (458)
Q Consensus 425 ~~~~~~~~~~~ 435 (458)
.+.+|+.....
T Consensus 291 ~i~i~d~~~~~ 301 (402)
T 2aq5_A 291 SIRYFEITSEA 301 (402)
T ss_dssp CEEEEEECSST
T ss_pred eEEEEEecCCC
Confidence 46677776543
No 83
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.56 E-value=0.05 Score=50.82 Aligned_cols=185 Identities=7% Similarity=-0.040 Sum_probs=93.9
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--C-CEEEEEcCCCCCcCccceEEEEEcCCCceeeC-CCCCC--C
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--G-TELLVFGRELTAHHISHVIYRYSILTNSWSSG-MRMNA--P 239 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~--~ 239 (458)
..+..||+.++++..+.. +.... .......+++ + +.||+... .+.+++||+. ++...+ ..... +
T Consensus 46 ~~i~~~d~~~g~~~~~~~-~~~~~-~~~~~~~i~~~~~~g~l~v~~~-------~~~l~~~d~~-g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICK-PEVNG-YGGIPAGCQCDRDANQLFVADM-------RLGLLVVQTD-GTFEEIAKKDSEGRR 115 (314)
T ss_dssp CEEEEECTTTCCEEEEEC-CEETT-EECCEEEEEECSSSSEEEEEET-------TTEEEEEETT-SCEEECCSBCTTSCB
T ss_pred CEEEEEeCCCCcEEEEEe-cccCC-CCCCCceEEEecCCCcEEEEEC-------CCCEEEEeCC-CCEEEEEeccCCCcc
Confidence 457889988888765532 10000 0001112233 4 78888763 2368999998 777655 32211 1
Q ss_pred Cc-eeeEEEe-CCEEEEEeccCC---------CCCccCeEEEEeCCCCcEEEcCC-CCCCCcceeEEEE-----CC-EEE
Q 012701 240 RC-LFGSASL-GEIAILAGGSDL---------EGNILSSAEMYNSETQTWKVLPS-MKNPRKMCSGVFM-----DG-KFY 301 (458)
Q Consensus 240 r~-~~~~~~~-~~~lyv~GG~~~---------~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~-----~g-~ly 301 (458)
.. -...+.. ++.+|+....+. .......+++||+. ++...+.. ... ....+.. ++ .||
T Consensus 116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS---EEEEEEEECTTSCEEEEE
T ss_pred ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC---cceEEEecccCCCCCEEE
Confidence 11 1223332 568888754321 11123578899987 65554321 111 1223333 34 467
Q ss_pred EEccccCCCCcccceEEEEECC-CCceEE---cCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEE
Q 012701 302 VIGGIGGSDSKVLTCGEEYDLE-TETWTE---IPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKY 376 (458)
Q Consensus 302 v~GG~~~~~~~~~~~v~~yd~~-~~~W~~---i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~y 376 (458)
+.... ...+.+||+. +.+... +..++...... +..+++- +|.||+.....+.|.+|
T Consensus 192 v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~------------p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 192 VAETP-------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGG------------ADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEETT-------TTEEEEEEEEETTEEEEEEEEEECCCCSSCE------------EEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred EEECC-------CCeEEEEECCCCCccccceEEEECCCCCCCC------------CCceEECCCCCEEEEEcCCCEEEEE
Confidence 76432 1467888875 343321 11121110000 0123332 67899987667899999
Q ss_pred eCCCCce
Q 012701 377 DKERRLW 383 (458)
Q Consensus 377 d~~~~~W 383 (458)
|+.+++-
T Consensus 253 d~~~g~~ 259 (314)
T 1pjx_A 253 GPDGGQP 259 (314)
T ss_dssp CTTCBSC
T ss_pred cCCCCcE
Confidence 9985543
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.037 Score=59.52 Aligned_cols=191 Identities=7% Similarity=0.027 Sum_probs=104.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
+.+++.|+. ...|.+||..++++..+..+........++.+ + +.+++.|+.+ ..+.+||..++.
T Consensus 21 g~~latg~~------dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~ 88 (753)
T 3jro_A 21 GKRLATCSS------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGR 88 (753)
T ss_dssp SCCEEEEET------TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTE
T ss_pred CCeEEEEEC------CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCc
Confidence 444555543 35688899887777665544432222333333 2 5677777765 458889999998
Q ss_pred EEEcCCCCCCCcceeEEEE--C--CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 278 WKVLPSMKNPRKMCSGVFM--D--GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
|..+..+.........+.+ + +++++.|+.+ ..+.+||+.+..-.....+.......
T Consensus 89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d-------g~I~vwdl~~~~~~~~~~~~~~~~~v------------- 148 (753)
T 3jro_A 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIGV------------- 148 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCSSSCCCCEEEECCSSCE-------------
T ss_pred ccccccccCCCCCeEEEEECCCCCCCEEEEEeCC-------CcEEEEEeecCCCcceeEeecCCCce-------------
Confidence 8766544433333333333 3 6777887765 36788998776211100000000000
Q ss_pred CEEEEE--------------CCEEEEEEcCCCeEEEEeCCCC--ceEEeccCCCccCCCCcccEEEEEe-C---CEEEEE
Q 012701 354 PLVAVV--------------NNELYAADYADMEVRKYDKERR--LWFTIGRLPERANSMNGWGLAFRAC-G---DRLIVI 413 (458)
Q Consensus 354 ~~~~~~--------------~~~lyv~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~-~---~~lyv~ 413 (458)
..++.. ++.+++.|+.++.|.+||..+. .+..+..+...... -.++... + +.+++.
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~----V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEECCCCSSSEEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc----EEEEEeccCCCCCCEEEE
Confidence 011111 3677888888899999998664 34444433322211 1222222 3 677888
Q ss_pred cCCCCCCCCeeeEEEeecCCC
Q 012701 414 GGPKASGEGFIELNSWVPSEG 434 (458)
Q Consensus 414 GG~~~~~~~~~~~~~~~~~~~ 434 (458)
||.+. .+.+|+....
T Consensus 225 ~s~Dg------~I~iwd~~~~ 239 (753)
T 3jro_A 225 VSQDR------TCIIWTQDNE 239 (753)
T ss_dssp EESSS------CEEEEEESSS
T ss_pred EecCC------EEEEecCCCC
Confidence 87543 4677777654
No 85
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=96.51 E-value=0.031 Score=53.37 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=77.5
Q ss_pred eEEEEEcCCCceeeCCCCCCCCceeeEE-EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCC-cceeEEE-
Q 012701 219 VIYRYSILTNSWSSGMRMNAPRCLFGSA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR-KMCSGVF- 295 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~- 295 (458)
.+|.+|..+++++.+........-...+ .-+++||+.+.... ...+.+||+.+++++.+....... .-...++
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 4677888888876643221111111222 22667887754321 257899999888877665422111 1122333
Q ss_pred ECCE-EEEEccccCCCCcccceEEEEECC-CCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE-EEEE-CCEEEEEEcCCC
Q 012701 296 MDGK-FYVIGGIGGSDSKVLTCGEEYDLE-TETWTEIPNMSPARGGAARGTEMPASAEAPPL-VAVV-NNELYAADYADM 371 (458)
Q Consensus 296 ~~g~-lyv~GG~~~~~~~~~~~v~~yd~~-~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~lyv~gg~~~ 371 (458)
-+|+ ||+.+... ..+.+||+. +.....+...+....+. . ++.....+. ++.. ++++|+.+...+
T Consensus 95 pdg~~l~~~~~~~-------~~v~v~~~~~~g~~~~~~~~~~~~~~p----~-~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 95 EARQLVYSANYHK-------GTAEVMKIAADGALTLTDTVQHSGHGP----R-PEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp TTTTEEEEEETTT-------TEEEEEEECTTSCEEEEEEEECCCCCS----S-TTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCEEEEEeCCC-------CEEEEEEeCCCCCeeecceeecCCCCC----C-ccccCCCceEEEECCCCcEEEEeCCCC
Confidence 3555 66554221 357778874 33444332211110000 0 000001112 2322 667888887778
Q ss_pred eEEEEeCC-CCceEEec
Q 012701 372 EVRKYDKE-RRLWFTIG 387 (458)
Q Consensus 372 ~v~~yd~~-~~~W~~v~ 387 (458)
.+.+||+. +++...+.
T Consensus 163 ~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred EEEEEEECCCCcEEEee
Confidence 99999998 56665554
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.50 E-value=0.28 Score=47.64 Aligned_cols=201 Identities=10% Similarity=0.019 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+++.|+. ...+.+||..++.-...-.- ....-.+++.. ++.+++.|+.+ ..+.+||..+.+-.
T Consensus 108 ~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~ 174 (420)
T 3vl1_A 108 QMRRFILGTT------EGDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNP 174 (420)
T ss_dssp SSCEEEEEET------TSCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCC
T ss_pred CCCEEEEEEC------CCCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCc
Confidence 5666777643 34688999887654332111 11111222222 45566677654 46889998876411
Q ss_pred EcCCCCCCCc-ceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEE-cCCCCCCCCCC-----CCCCCC----C
Q 012701 280 VLPSMKNPRK-MCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGA-----ARGTEM----P 347 (458)
Q Consensus 280 ~~~~~p~~r~-~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~-----~~~~~~----~ 347 (458)
. .+..... -.+.+.. ++++++.|+.+ ..+..||+.+.+-.. +.......... .++... .
T Consensus 175 ~--~~~~h~~~v~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 175 R--TLIGHRATVTDIAIIDRGRNVLSASLD-------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp E--EEECCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred e--EEcCCCCcEEEEEEcCCCCEEEEEcCC-------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 1 1111111 1222333 66777777655 257889988765322 11100000000 000000 0
Q ss_pred CCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe-CCE-EEEEcCCCCCCCCeee
Q 012701 348 ASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GDR-LIVIGGPKASGEGFIE 425 (458)
Q Consensus 348 ~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~-lyv~GG~~~~~~~~~~ 425 (458)
...........-++++++.|+..+.|.+||..+..-... ++.... ..-.+++.. ++. +++.|+.+ ..
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~---~~v~~~~~~~~~~~~l~~g~~d------g~ 314 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ--LPSKFT---CSCNSLTVDGNNANYIYAGYEN------GM 314 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEE--ECCTTS---SCEEEEEECSSCTTEEEEEETT------SE
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEE--cccccC---CCceeEEEeCCCCCEEEEEeCC------Ce
Confidence 000000000112677888888889999999987653221 111111 011222222 344 67777643 25
Q ss_pred EEEeecCCC
Q 012701 426 LNSWVPSEG 434 (458)
Q Consensus 426 ~~~~~~~~~ 434 (458)
+.+|+....
T Consensus 315 i~vwd~~~~ 323 (420)
T 3vl1_A 315 LAQWDLRSP 323 (420)
T ss_dssp EEEEETTCT
T ss_pred EEEEEcCCC
Confidence 677877653
No 87
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.49 E-value=0.24 Score=47.12 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=73.2
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce-eEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC-SGV 294 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~ 294 (458)
...+.+||+.+++-...-.-.... -.+++.. ++.+++.|+.+ ..+.+||..++.-... +....... +.+
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~--~~~h~~~v~~v~ 233 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQT--FTGHESDINAIC 233 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEE--ECCCSSCEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEE--EcCCcCCEEEEE
Confidence 356889999887543221111111 1122222 56677888866 4588899887653221 11111111 222
Q ss_pred E-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCe
Q 012701 295 F-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADME 372 (458)
Q Consensus 295 ~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~ 372 (458)
+ -++++++.|+.+ ..+..||+.+..-...-..+...... ..++. -++.+++.|+.++.
T Consensus 234 ~~p~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~~~~~~~v-------------~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 234 FFPNGNAFATGSDD-------ATCRLFDLRADQELMTYSHDNIICGI-------------TSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp ECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCTTCCSCE-------------EEEEECTTSSEEEEEETTSE
T ss_pred EcCCCCEEEEEcCC-------CcEEEEECCCCcEEEEEccCCcccce-------------EEEEECCCCCEEEEECCCCe
Confidence 2 267777887765 35788998876532111111100111 01222 26788888888999
Q ss_pred EEEEeCCCCc
Q 012701 373 VRKYDKERRL 382 (458)
Q Consensus 373 v~~yd~~~~~ 382 (458)
|.+||..+..
T Consensus 294 i~vwd~~~~~ 303 (340)
T 1got_B 294 CNVWDALKAD 303 (340)
T ss_dssp EEEEETTTCC
T ss_pred EEEEEcccCc
Confidence 9999987654
No 88
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.49 E-value=0.069 Score=50.29 Aligned_cols=180 Identities=14% Similarity=0.145 Sum_probs=88.6
Q ss_pred eEEEEEcCCCceeeCCCCCCCCceeeEEEe-CC-EEEEEeccCCCCCccCe-EEEEeCCCCc-EEEc--CCCCCCCccee
Q 012701 219 VIYRYSILTNSWSSGMRMNAPRCLFGSASL-GE-IAILAGGSDLEGNILSS-AEMYNSETQT-WKVL--PSMKNPRKMCS 292 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~-v~~yd~~t~~-W~~~--~~~p~~r~~~~ 292 (458)
.+++||+.+++....- +.....+..+.. ++ .||+.+..+ .. +.+|+...+. -... ..++.......
T Consensus 109 ~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 180 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSS------ANTVRRFKIDADGVLFDTGQEFISGGTRPFN 180 (331)
T ss_dssp EEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETT------TTEEEEEEECTTCCEEEEEEEEECSSSSEEE
T ss_pred cEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCC------CceEEEEEECCCCcEeecCCccccCCCCccc
Confidence 7999999888754432 222222333333 33 588776532 33 6666665432 1100 00111111122
Q ss_pred EEE-ECCE-EEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEE
Q 012701 293 GVF-MDGK-FYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAAD 367 (458)
Q Consensus 293 ~~~-~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~g 367 (458)
.++ -+|+ +|+.+... ..+.+||+.+.+. ..+..++...... .++.. +++ ||+..
T Consensus 181 ~~~spdg~~l~v~~~~~-------~~v~v~d~~~~~~~~~~~~~~~~~~~~--------------~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 181 ITFTPDGNFAFVANLIG-------NSIGILETQNPENITLLNAVGTNNLPG--------------TIVVSRDGSTVYVLT 239 (331)
T ss_dssp EEECTTSSEEEEEETTT-------TEEEEEECSSTTSCEEEEEEECSSCCC--------------CEEECTTSSEEEEEC
T ss_pred eEECCCCCEEEEEeCCC-------CeEEEEECCCCcccceeeeccCCCCCc--------------eEEECCCCCEEEEEE
Confidence 222 2564 77765332 4688999987764 1121122111111 23333 454 77776
Q ss_pred cCCCeEEEEeCCCCceEEeccCCCcc--CCCCcc---cEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 368 YADMEVRKYDKERRLWFTIGRLPERA--NSMNGW---GLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 368 g~~~~v~~yd~~~~~W~~v~~lp~~~--~~~~~~---~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
...+.|.+||..+++.+.+..++... .....+ ..++..-+..||+.+... ..+.+|+.+.
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~------~~v~v~d~~~ 304 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS------RELKVFTISG 304 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT------TEEEEEETTS
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC------CcEEEEEecC
Confidence 55678999999998876655333220 000001 133333345677766422 2567787654
No 89
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.45 E-value=1.2 Score=47.17 Aligned_cols=208 Identities=15% Similarity=0.150 Sum_probs=110.2
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCc----cccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNE----CFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-- 229 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 229 (458)
.+|+......++++|..++ .|..-...+... +........+..++.||+.. ....++.+|..|++
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~-------~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGRLIALDAATGKEV 151 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc-------CCCEEEEEECCCCCEE
Confidence 3455444557888998887 587654433211 10011223455688888874 33579999999875
Q ss_pred eeeCCC-C-CC-CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCC---C-------------
Q 012701 230 WSSGMR-M-NA-PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNP---R------------- 288 (458)
Q Consensus 230 W~~~~~-~-p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~---r------------- 288 (458)
|+.-.. - +. ......-++.++.||+..+.... .....+..||..|++ |+.-...+.. .
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~ 230 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWD 230 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSC
T ss_pred eeecCCcCcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccc
Confidence 865432 1 11 11222334568888876543221 124679999999886 8763211110 0
Q ss_pred -------------cceeEEE--ECCEEEEEccccC-----------CCCcccceEEEEECCCCc--eEEcCCCCCCCCCC
Q 012701 289 -------------KMCSGVF--MDGKFYVIGGIGG-----------SDSKVLTCGEEYDLETET--WTEIPNMSPARGGA 340 (458)
Q Consensus 289 -------------~~~~~~~--~~g~lyv~GG~~~-----------~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~ 340 (458)
.....++ .++.||+-.+... .+..+..++..+|+.+.+ |+.-.. +......
T Consensus 231 ~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~ 309 (677)
T 1kb0_A 231 PSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-PGDNWDY 309 (677)
T ss_dssp GGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCC
T ss_pred ccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-CCccccc
Confidence 0011222 2677887654320 123345679999999875 864221 1110000
Q ss_pred CCCCCCCCCcCCCCEEEE--ECC---EEEEEEcCCCeEEEEeCCCCc
Q 012701 341 ARGTEMPASAEAPPLVAV--VNN---ELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~--~~~---~lyv~gg~~~~v~~yd~~~~~ 382 (458)
. ....+.++- .+| .+++++...+.++.+|..+++
T Consensus 310 ------~--~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~ 348 (677)
T 1kb0_A 310 ------T--STQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK 348 (677)
T ss_dssp ------C--CCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred ------c--cCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 0 001112332 255 566666666788888887764
No 90
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.44 E-value=0.086 Score=49.32 Aligned_cols=134 Identities=10% Similarity=0.113 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-E
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-F 295 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~ 295 (458)
..+.+||..+++....-.-.. ..-..++.. ++.+++.|+.+ ..+.+||..+++-... +.........+ .
T Consensus 45 g~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 115 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSNLLVSASDD------KTLKIWDVSSGKCLKT--LKGHSNYVFCCNF 115 (312)
T ss_dssp SCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEE
T ss_pred CeEEEEeCCCcccchhhccCC-CceEEEEEcCCCCEEEEECCC------CEEEEEECCCCcEEEE--EcCCCCCEEEEEE
Confidence 457888888776644321111 111122222 45667777755 4688899987753221 11111111122 2
Q ss_pred -ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCe
Q 012701 296 -MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADME 372 (458)
Q Consensus 296 -~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~ 372 (458)
-++++++.|+.+ ..+.+||+.+.+-... ++...... ..+.. ++.+++.++..+.
T Consensus 116 ~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~--~~~~~~~v--------------~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 116 NPQSNLIVSGSFD-------ESVRIWDVKTGKCLKT--LPAHSDPV--------------SAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp CSSSSEEEEEETT-------SCEEEEETTTCCEEEE--ECCCSSCE--------------EEEEECTTSSEEEEEETTSC
T ss_pred cCCCCEEEEEeCC-------CcEEEEECCCCEEEEE--ecCCCCcE--------------EEEEEcCCCCEEEEEeCCCc
Confidence 256677777765 3578899987653221 11111101 12222 5677888888899
Q ss_pred EEEEeCCCCce
Q 012701 373 VRKYDKERRLW 383 (458)
Q Consensus 373 v~~yd~~~~~W 383 (458)
|.+||..+.+-
T Consensus 173 i~~wd~~~~~~ 183 (312)
T 4ery_A 173 CRIWDTASGQC 183 (312)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCce
Confidence 99999987754
No 91
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.42 E-value=0.04 Score=52.85 Aligned_cols=158 Identities=13% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC--CCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN--APRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
++.+++.|+. ...+.+||..++.|.....+. ....-.+++. -++..++.|+.+ ..+.+||..++.
T Consensus 27 ~g~~las~~~------D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~ 94 (345)
T 3fm0_A 27 AGTLLASCGG------DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDD 94 (345)
T ss_dssp TSSCEEEEET------TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-
T ss_pred CCCEEEEEcC------CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCC
Confidence 4455556643 346888888888775332221 1111112222 255667777765 347778888777
Q ss_pred EEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc-eEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 278 WKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
++.+..+.........+.+ ++++++.|+.+ ..+.+||+.+.. +..+..+.. .... . .
T Consensus 95 ~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~-h~~~-----v-------~ 154 (345)
T 3fm0_A 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRD-------KSVWVWEVDEEDEYECVSVLNS-HTQD-----V-------K 154 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEEECTTSCEEEEEEECC-CCSC-----E-------E
T ss_pred eEEEEEccCCCCCceEEEEeCCCCEEEEEECC-------CeEEEEECCCCCCeEEEEEecC-cCCC-----e-------E
Confidence 6554433322222222222 67777777765 357788876543 322221111 1111 0 0
Q ss_pred EEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCC
Q 012701 355 LVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLP 390 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp 390 (458)
.++.. ++.+++.|+.++.|.+||..+..|..+..+.
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~ 191 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec
Confidence 12222 5677888888899999999999887665443
No 92
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.42 E-value=0.4 Score=45.74 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCC---CCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcC-
Q 012701 297 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM---SPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYA- 369 (458)
Q Consensus 297 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~- 369 (458)
+|+ +|+.+... ..+.+||+.++++..+..+ +...... ..++.. ++ .||+....
T Consensus 221 dg~~l~v~~~~~-------~~v~v~~~~~g~~~~~~~~~~~~~~~~~~-------------~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 221 DGKFAYLINEIG-------GTVIAFRYADGMLDEIQTVAADTVNAQGS-------------GDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp TSSEEEEEETTT-------CEEEEEEEETTEEEEEEEEESCSSCCCCE-------------EEEEECTTSSEEEEEECSS
T ss_pred CCCEEEEEcCCC-------CeEEEEEecCCceEEeEEEecCCCCCCCc-------------ccEEECCCCCEEEEECCCC
Confidence 564 66664222 4578888887776554432 2211111 023322 44 47776655
Q ss_pred CCeEEEEeCC--CCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEee
Q 012701 370 DMEVRKYDKE--RRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLA 442 (458)
Q Consensus 370 ~~~v~~yd~~--~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~ 442 (458)
.+.+.+|+.. +++++.+..++..... .++++..-+..||+.+... ..+.+|..+..+.+-+.+.
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~g~~~---~~~~~spdg~~l~~~~~~~------~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLTGIHP---RNFIITPNGKYLLVACRDT------NVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEECSSCC---CEEEECTTSCEEEEEETTT------TEEEEEEECTTTCCEEECS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecCCCCC---ceEEECCCCCEEEEEECCC------CCEEEEEEECCCCcEeecc
Confidence 5778888774 6777777655542111 1233322233466655321 2466666665556655553
No 93
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.48 Score=46.94 Aligned_cols=211 Identities=9% Similarity=-0.111 Sum_probs=99.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceee--CCCCCCCCce-eeE-EEeC---CEEEEEeccCCCCCccCeEEEEeC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSS--GMRMNAPRCL-FGS-ASLG---EIAILAGGSDLEGNILSSAEMYNS 273 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~~~~p~~r~~-~~~-~~~~---~~lyv~GG~~~~~~~~~~v~~yd~ 273 (458)
++..+++|+ ....+++|+..+..... ...+...... .++ ..-+ +.+++.|+.+ ..+.+||.
T Consensus 160 ~~~~l~~~~------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd~ 227 (450)
T 2vdu_B 160 DDTTVIIAD------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISHY 227 (450)
T ss_dssp TSSEEEEEE------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEEE
T ss_pred CCCEEEEEe------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEEC
Confidence 445555553 23468889887655332 1111111111 122 2235 7777888765 45888998
Q ss_pred CCCcEEEc-CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC-------------CCCCCC
Q 012701 274 ETQTWKVL-PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM-------------SPARGG 339 (458)
Q Consensus 274 ~t~~W~~~-~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~-------------p~~r~~ 339 (458)
.++.-... ..-......+.... ++++++.|+.+ ..+.+||+.+.+....-.. +..+..
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD-------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ 299 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS-------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC-------CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence 87653321 11011111112223 78888887754 3688899988764321110 000000
Q ss_pred CCCCCCCCCCcCCCCEEEEE-CCEEEEEEc-CCCeEEEEeC--CC-CceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 340 AARGTEMPASAEAPPLVAVV-NNELYAADY-ADMEVRKYDK--ER-RLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg-~~~~v~~yd~--~~-~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
........ .....++.. ++..+++++ ..+.|.+||. .+ +.+..+..++... .-..++...+.+++..
T Consensus 300 ~~~~~~~~---~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~-----~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 300 NENNDIIE---FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY-----NVISLSAHNDEFQVTL 371 (450)
T ss_dssp -----CBC---CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS-----CEEEEEEETTEEEEEE
T ss_pred ccccccce---EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC-----ceEEEEecCCcEEEEE
Confidence 00000000 000012222 344444444 7789999998 33 4566665554331 1244555567777766
Q ss_pred CCCC-CCCCeeeEEEeecCCCCCCce
Q 012701 415 GPKA-SGEGFIELNSWVPSEGPPQWN 439 (458)
Q Consensus 415 G~~~-~~~~~~~~~~~~~~~~~~~W~ 439 (458)
+... .+.....+.+|.++.....|+
T Consensus 372 ~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 372 DNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp CCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred ecccCCCCCCcceEEEEEEcCCCeEE
Confidence 5432 221223355565555555664
No 94
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.39 E-value=0.13 Score=55.35 Aligned_cols=178 Identities=5% Similarity=0.028 Sum_probs=101.8
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC---CC-C
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN---AP-R 240 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~-r 240 (458)
.-+..||+.++++..+......... -..++.- ++.|++.. . .-+++||+.+++|......+ .+ .
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~---v~~i~~d~~g~lwigt-------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 495 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLD---VRVFYEDKNKKIWIGT-------H-AGVFVIDLASKKVIHHYDTSNSQLLEN 495 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCC---EEEEEECTTSEEEEEE-------T-TEEEEEESSSSSCCEEECTTTSSCSCS
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCe---EEEEEECCCCCEEEEE-------C-CceEEEeCCCCeEEecccCcccccccc
Confidence 4677899998888877532111000 0111222 46777643 2 46899999999987654322 11 1
Q ss_pred ceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC-CCCcceeEEEE--CCEEEEEccccCCCCcccce
Q 012701 241 CLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK-NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTC 316 (458)
Q Consensus 241 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~ 316 (458)
.-.+.+.. ++.||+..- . ..+.+||+.+++++...... .+-.....+.. +|.|++... ..
T Consensus 496 ~i~~i~~d~~g~lWigt~-~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~---------~G 559 (781)
T 3v9f_A 496 FVRSIAQDSEGRFWIGTF-G------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG---------EG 559 (781)
T ss_dssp CEEEEEECTTCCEEEEES-S------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET---------TE
T ss_pred eeEEEEEcCCCCEEEEEc-C------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC---------CC
Confidence 11122222 567776531 1 34788999999988765311 11111122222 577877532 23
Q ss_pred E-EEEECCCCceEEcCC---CCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 317 G-EEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 317 v-~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
+ .+||+.++++..+.. +|.... . +++.- +|.||+.+ .+.+.+||+.+++++...
T Consensus 560 lv~~~d~~~~~~~~~~~~~gl~~~~i-~--------------~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 560 LVCFPSARNFDYQVFQRKEGLPNTHI-R--------------AISEDKNGNIWAST--NTGISCYITSKKCFYTYD 618 (781)
T ss_dssp EEEESCTTTCCCEEECGGGTCSCCCC-C--------------EEEECSSSCEEEEC--SSCEEEEETTTTEEEEEC
T ss_pred ceEEECCCCCcEEEccccCCCCCceE-E--------------EEEECCCCCEEEEc--CCceEEEECCCCceEEec
Confidence 5 889999988877642 222211 1 34333 67888875 356999999999887764
No 95
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.37 E-value=0.42 Score=51.60 Aligned_cols=209 Identities=14% Similarity=0.094 Sum_probs=115.5
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCC----
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTN---- 228 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~---- 228 (458)
.++|++. ....+..++.....+..+...... ...+++ ++.||+.-. ..+.|+++++...
T Consensus 395 ~p~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~-------~~gl~~d~~~~~lY~sD~------~~~~I~~~~l~g~~~~~ 460 (791)
T 3m0c_C 395 IAYLFFT-NRHEVRKMTLDRSEYTSLIPNLRN-------VVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVS 460 (791)
T ss_dssp CCEEEEE-CBSSEEEECTTSCCCEEEECSCSS-------EEEEEEETTTTEEEEEET------TTTEEEEEEC-------
T ss_pred ccccccc-cccceeEeeccCCcceeeecCCCc-------eEEEeecccCCeeEEeec------cceeEEEEeccCCCCCc
Confidence 3455543 345677777777666554322111 112333 678998853 2356888887642
Q ss_pred ceee-CC-CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC--CCCCCCcceeEEEE--CCEE
Q 012701 229 SWSS-GM-RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP--SMKNPRKMCSGVFM--DGKF 300 (458)
Q Consensus 229 ~W~~-~~-~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~g~l 300 (458)
.... +. .+..|. ++++ .++.||+.-. ....|+++++....-+.+. .+..|+ .+++. ++.|
T Consensus 461 ~~~~vi~~~l~~P~---GLAvD~~~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~L 528 (791)
T 3m0c_C 461 SYDTVISRDIQAPD---GLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFM 528 (791)
T ss_dssp -CEEEECSSCSCCC---EEEEETTTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEE
T ss_pred ceeEEEecCCCCcc---eeeeeecCCcEEEEec------CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCE
Confidence 2222 22 222222 3343 3679999843 2367999999876655543 222221 23332 5899
Q ss_pred EEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeC
Q 012701 301 YVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDK 378 (458)
Q Consensus 301 yv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~ 378 (458)
|+.-- .....|+++++....-..+..- .. ..|..+++- +++||+.......|+++|+
T Consensus 529 YwtD~------g~~~~I~~~~~dG~~~~~lv~~--~l-------------~~P~GLavD~~~~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 529 YWTDW------GTPAKIKKGGLNGVDIYSLVTE--NI-------------QWPNGITLDLLSGRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp EEEEC------SSSCEEEEEETTSCCEEEEECS--SC-------------SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEecC------CCCCeEEEEecCCCceEEEEeC--CC-------------CCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 99731 1124688898876544433210 00 111245554 7899999988899999999
Q ss_pred CCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 379 ERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 379 ~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
....=+.+..-..... +..++++.+++||+.-.
T Consensus 588 dG~~~~~v~~~~~~l~----~P~glav~~~~lYwtD~ 620 (791)
T 3m0c_C 588 NGGNRKTILEDEKRLA----HPFSLAVFEDKVFWTDI 620 (791)
T ss_dssp TSCSCEEEEECTTTTS----SEEEEEEETTEEEEEET
T ss_pred CCCceEEEecCCCccC----CCCEEEEeCCEEEEEEC
Confidence 7655444432111111 23566678899999863
No 96
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=96.37 E-value=0.24 Score=44.90 Aligned_cols=185 Identities=13% Similarity=0.010 Sum_probs=94.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCC-CceeeCCCCCCCCceee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILT-NSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~ 244 (458)
..++.+|+.+++...+....... ......-++..+++++ ...+++||+.+ ++...+...........
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v-----~~~~~spdg~~l~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 89 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELF-----EAPNWSPDGKYLLLNS-------EGLLYRLSLAGDPSPEKVDTGFATICNND 89 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCC-----EEEEECTTSSEEEEEE-------TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred eeEEEEeCCCCceeeeccCCcce-----EeeEECCCCCEEEEEc-------CCeEEEEeCCCCCCceEeccccccccccc
Confidence 35677888877665443322111 0011222455555552 24799999999 87766654332122122
Q ss_pred EE-EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEccccCCCCcccceEEEEE
Q 012701 245 SA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGK-FYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 245 ~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd 321 (458)
.+ .-+++.+++++.... ....++.++..++.-+.+..... ....+.. +++ |++.++.++ ...++.+|
T Consensus 90 ~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~-----~~~l~~~~ 159 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ-----VFDIYSMD 159 (297)
T ss_dssp CEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT-----EEEEEEEE
T ss_pred eEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC-----ceEEEEEE
Confidence 22 224555555553322 24678999988877665543321 2222222 555 444444331 13577778
Q ss_pred CCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEEcC--CCeEEEEeCCCCceEEecc
Q 012701 322 LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAADYA--DMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 322 ~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~gg~--~~~v~~yd~~~~~W~~v~~ 388 (458)
+.+.....+...+... . .++.. +++ |++.+.. ...++.++...+....+..
T Consensus 160 ~~~~~~~~~~~~~~~~--~--------------~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 160 IDSGVETRLTHGEGRN--D--------------GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp TTTCCEEECCCSSSCE--E--------------EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred CCCCcceEcccCCCcc--c--------------cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 8877776654322111 0 22222 454 4444432 3567777777777666543
No 97
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.34 E-value=0.031 Score=53.82 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc-
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT- 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 277 (458)
++.+++.|+. ...+.+||..++.|..+..+........++.+ ++.+++.|+.+ ..+.+||..++.
T Consensus 22 ~g~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 22 QRTEFVTTTA------TNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGT 89 (377)
T ss_dssp SSSEEECCCS------SSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------C
T ss_pred CCCEEEEecC------CCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCc
Confidence 4555666643 34678899999988877666533322233333 45666777755 358888988876
Q ss_pred EEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc-eEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 278 WKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
|.....+.........+.+ ++++++.|+.+ ..+.+||+.+.. |..+..+..+.... -.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~h~~~------------v~ 150 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA-------RVISVCYFEQENDWWVSKHLKRPLRST------------IL 150 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESS-------SCEEECCC-----CCCCEEECSSCCSC------------EE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecC-------CeEEEEEECCcccceeeeEeecccCCC------------eE
Confidence 4433222222222222222 56777777654 247788887664 33222222211111 00
Q ss_pred EEEEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 355 LVAVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.++.. ++.+++.|+.++.|.+||..++.
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence 22222 56778888888899999986443
No 98
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.81 Score=49.12 Aligned_cols=204 Identities=8% Similarity=-0.058 Sum_probs=108.0
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-Ccee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-RCLF 243 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~ 243 (458)
.-+..||+.++++..+.. +...... .-.+++.. ++.|++ |. ...-+++||+.+++++.......+ ..-.
T Consensus 383 ~Gl~~~~~~~~~~~~~~~-~~~~~~~-~v~~i~~d~~g~lWi-gt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKE-NRELLSN-SVLCSLKDSEGNLWF-GT------YLGNISYYNTRLKKFQIIELEKNELLDVR 453 (781)
T ss_dssp SCEEEEETTEEEEECC------CCCS-BEEEEEECTTSCEEE-EE------TTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred CcEEEEECCCCeEEEccC-CCCCCCc-ceEEEEECCCCCEEE-Ee------ccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence 346778887776665421 1111000 00112222 566766 31 235689999999999877532111 1122
Q ss_pred eEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC---CCCcceeEEEE--CCEEEEEccccCCCCcccceE
Q 012701 244 GSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK---NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 244 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v 317 (458)
+.+.. ++.||+... ..+.+||+.+++|+.....+ ........... +|+|+|-. .. ..+
T Consensus 454 ~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~-------~Gl 517 (781)
T 3v9f_A 454 VFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FG-------GGV 517 (781)
T ss_dssp EEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SS-------SCE
T ss_pred EEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cC-------CCE
Confidence 23333 567777522 45889999999887654322 11111112222 57777642 21 237
Q ss_pred EEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeE-EEEeCCCCceEEec---cCCCc
Q 012701 318 EEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEV-RKYDKERRLWFTIG---RLPER 392 (458)
Q Consensus 318 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v-~~yd~~~~~W~~v~---~lp~~ 392 (458)
.+||+.+++++.+.......... -.+++. .+|.|++... ..+ .+||+.+++++... .+|..
T Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~------------i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~~gl~~~ 583 (781)
T 3v9f_A 518 GIYTPDMQLVRKFNQYEGFCSNT------------INQIYRSSKGQMWLATG--EGLVCFPSARNFDYQVFQRKEGLPNT 583 (781)
T ss_dssp EEECTTCCEEEEECTTTTCSCSC------------EEEEEECTTSCEEEEET--TEEEEESCTTTCCCEEECGGGTCSCC
T ss_pred EEEeCCCCeEEEccCCCCCCCCe------------eEEEEECCCCCEEEEEC--CCceEEECCCCCcEEEccccCCCCCc
Confidence 88999999988765311000111 002222 2578888754 556 99999999887764 23332
Q ss_pred cCCCCcccEEEEE-eCCEEEEEc
Q 012701 393 ANSMNGWGLAFRA-CGDRLIVIG 414 (458)
Q Consensus 393 ~~~~~~~~~a~~~-~~~~lyv~G 414 (458)
.. .+++. -++.|++.+
T Consensus 584 ~i------~~i~~d~~g~lW~~t 600 (781)
T 3v9f_A 584 HI------RAISEDKNGNIWAST 600 (781)
T ss_dssp CC------CEEEECSSSCEEEEC
T ss_pred eE------EEEEECCCCCEEEEc
Confidence 21 22333 357787765
No 99
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.30 E-value=0.25 Score=46.79 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=93.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceee-CCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSS-GMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
+.+++.|+ ....+.+||..+++-.. +..-+. .. .+++. -++..++.|+.+ ..+.+||..++.-.
T Consensus 92 ~~~l~s~s------~D~~i~lWd~~~~~~~~~~~~~~~-~~-~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 92 LPIAASSS------LDAHIRLWDLENGKQIKSIDAGPV-DA-WTLAFSPDSQYLATGTHV------GKVNIFGVESGKKE 157 (321)
T ss_dssp SSEEEEEE------TTSEEEEEETTTTEEEEEEECCTT-CC-CCEEECTTSSEEEEECTT------SEEEEEETTTCSEE
T ss_pred CCEEEEEe------CCCcEEEEECCCCCEEEEEeCCCc-cE-EEEEECCCCCEEEEEcCC------CcEEEEEcCCCcee
Confidence 34555554 34568889988775422 111111 11 12222 245666666644 45788888876532
Q ss_pred EcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEE-cCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..-... .....+.+. -++++++.|+.+ ..+.+||+.+.+-.. +.. ..... ..++
T Consensus 158 ~~~~~~-~~~v~~~~~spdg~~lasg~~d-------g~i~iwd~~~~~~~~~~~~---h~~~v-------------~~l~ 213 (321)
T 3ow8_A 158 YSLDTR-GKFILSIAYSPDGKYLASGAID-------GIINIFDIATGKLLHTLEG---HAMPI-------------RSLT 213 (321)
T ss_dssp EEEECS-SSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECC---CSSCC-------------CEEE
T ss_pred EEecCC-CceEEEEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEEcc---cCCce-------------eEEE
Confidence 211111 111112222 367777887765 357889998775322 211 00000 0233
Q ss_pred EE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 358 VV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 358 ~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.. ++.+++.|+.++.|.+||..+..-... +..... .-..++. .++.+++.|+.+. .+.+|+...
T Consensus 214 ~spd~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~h~~----~v~~~~~sp~~~~l~s~s~D~------~v~iwd~~~ 279 (321)
T 3ow8_A 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGT--LSGHAS----WVLNVAFCPDDTHFVSSSSDK------SVKVWDVGT 279 (321)
T ss_dssp ECTTSCEEEEECTTSCEEEEETTTCCEEEE--ECCCSS----CEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred EcCCCCEEEEEcCCCeEEEEECCCcceeEE--EcCCCC----ceEEEEECCCCCEEEEEeCCC------cEEEEeCCC
Confidence 32 677888888889999999987654322 221111 1122222 2566677776532 466777643
No 100
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.28 E-value=0.24 Score=51.03 Aligned_cols=235 Identities=13% Similarity=-0.005 Sum_probs=113.9
Q ss_pred EEEEEe-ccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEc--CCCcee
Q 012701 158 WVYFSC-HLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSI--LTNSWS 231 (458)
Q Consensus 158 ~l~~~~-~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~--~t~~W~ 231 (458)
.+|+.. ....+..+|..+.+-...-+.... .+ .+++ +..||+.+. .+.|.+||+ .|.+-
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~------~~-~v~~spdg~~l~v~~~-------d~~V~v~D~~~~t~~~- 214 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA------VH-ISRMSASGRYLLVIGR-------DARIDMIDLWAKEPTK- 214 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTT------EE-EEEECTTSCEEEEEET-------TSEEEEEETTSSSCEE-
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcc------cc-eEEECCCCCEEEEECC-------CCeEEEEECcCCCCcE-
Confidence 344433 345788899988765322111111 11 1222 456777652 267999999 66543
Q ss_pred eCCCCCCCCceeeEEEe------CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cCC--C--------CCCCcceeEE
Q 012701 232 SGMRMNAPRCLFGSASL------GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPS--M--------KNPRKMCSGV 294 (458)
Q Consensus 232 ~~~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~--~--------p~~r~~~~~~ 294 (458)
+..++....-...+.- +..+|+.... ...+.++|..+.+-.. ++. + +.++.....+
T Consensus 215 -~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 215 -VAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp -EEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred -EEEEecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 2223322222233332 3466665432 2568888988775322 211 1 1112111112
Q ss_pred EE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCE-EEEEEcCCC
Q 012701 295 FM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNE-LYAADYADM 371 (458)
Q Consensus 295 ~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~-lyv~gg~~~ 371 (458)
.. ++.+|+.... ...+.++|..+.+-..+..++..+.-+ .++. -+++ +|+.....+
T Consensus 288 s~~~~~~~vs~~~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~--------------~~~~spdg~~l~va~~~~~ 346 (543)
T 1nir_A 288 SHEHPEFIVNVKE-------TGKVLLVNYKDIDNLTVTSIGAAPFLH--------------DGGWDSSHRYFMTAANNSN 346 (543)
T ss_dssp CSSSSEEEEEETT-------TTEEEEEECTTSSSCEEEEEECCSSCC--------------CEEECTTSCEEEEEEGGGT
T ss_pred CCCCCEEEEEECC-------CCeEEEEEecCCCcceeEEeccCcCcc--------------CceECCCCCEEEEEecCCC
Confidence 22 3445544322 246888998765321111111111111 2232 2454 666666678
Q ss_pred eEEEEeCCCCceEEe---ccCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeeEEEeecCCC---CCCceEeecc
Q 012701 372 EVRKYDKERRLWFTI---GRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIELNSWVPSEG---PPQWNLLARK 444 (458)
Q Consensus 372 ~v~~yd~~~~~W~~v---~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~---~~~W~~l~~~ 444 (458)
.|.++|..+++-... +..|.+. .+..+..- ++.+|+.+... ...+.+|+.+.. ...|+.+..+
T Consensus 347 ~v~v~D~~tg~l~~~i~~g~~ph~g-----~g~~~~~p~~g~~~~s~~~~-----d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 347 KVAVIDSKDRRLSALVDVGKTPHPG-----RGANFVHPKYGPVWSTSHLG-----DGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEEETTTTEEEEEEECSSSBCCT-----TCEEEEETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred eEEEEECCCCeEEEeeccCCCCCCC-----CCcccCCCCCccEEEeccCC-----CceEEEEEeCCCCCchhcCeEEEEE
Confidence 999999998864332 2223222 23444322 36788876421 125667776542 1248776554
Q ss_pred C
Q 012701 445 Q 445 (458)
Q Consensus 445 p 445 (458)
+
T Consensus 417 ~ 417 (543)
T 1nir_A 417 Q 417 (543)
T ss_dssp E
T ss_pred E
Confidence 3
No 101
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.28 E-value=0.41 Score=46.56 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=93.1
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
...+++||..+++............-.+++.. ++.++++|+.+ ..+.+||..+++-... +.........+.
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~ 183 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRT--MAGHQARVGCLS 183 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEE--ECCCSSCEEEEE
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEE--ecCCCCceEEEE
Confidence 45689999988876554433322222222222 55666777654 3588899988764322 111222223344
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCce--EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCe
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETW--TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADME 372 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W--~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~ 372 (458)
.++++++.|+.+ ..+..||+....- ..+.. ..+. -..++.. ++.+++.|+.++.
T Consensus 184 ~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~----~~~~------------v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 184 WNRHVLSSGSRS-------GAIHHHDVRIANHQIGTLQG----HSSE------------VCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp EETTEEEEEETT-------SEEEEEETTSSSCEEEEEEC----CSSC------------EEEEEECTTSSEEEEEETTSC
T ss_pred ECCCEEEEEcCC-------CCEEEEecccCcceeeEEcC----CCCC------------eeEEEEcCCCCEEEEEeCCCe
Confidence 467777777755 3688899874321 11111 0111 0012222 6778888888899
Q ss_pred EEEEeCCCCceEE-eccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 373 VRKYDKERRLWFT-IGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 373 v~~yd~~~~~W~~-v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
|.+||..+..-.. +....... ...++...+..+++.||.. ....+..|+...
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v-----~~~~~~p~~~~ll~~~~gs----~d~~i~i~d~~~ 293 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAV-----KAVAWCPWQSNLLATGGGT----MDKQIHFWNAAT 293 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCC-----CEEEECTTSTTEEEEECCT----TTCEEEEEETTT
T ss_pred EEEccCCCCCccEEecCCcceE-----EEEEECCCCCCEEEEecCC----CCCEEEEEECCC
Confidence 9999998754322 21111111 1122222245777777411 112566777654
No 102
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.27 E-value=0.41 Score=46.59 Aligned_cols=227 Identities=9% Similarity=0.071 Sum_probs=108.3
Q ss_pred eccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 163 CHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 163 ~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
.....+..||..+.+....-. . +...-..+..++.+++.|+. ...+.+||..+..-... .+......
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~--~----~~~~v~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~-~~~~~~~~ 219 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMA--G----HQARVGCLSWNRHVLSSGSR------SGAIHHHDVRIANHQIG-TLQGHSSE 219 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEEC--C----CSSCEEEEEEETTEEEEEET------TSEEEEEETTSSSCEEE-EEECCSSC
T ss_pred CCCCeEEEEECcCCeEEEEec--C----CCCceEEEEECCCEEEEEcC------CCCEEEEecccCcceee-EEcCCCCC
Confidence 334456777776654332111 0 11111223345556666643 45788999874331111 11111111
Q ss_pred eeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceE
Q 012701 243 FGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 243 ~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v 317 (458)
..+..+ ++.+++.|+.+ ..+.+||..+..-.. +... ...-.+.+.. +..+++.||.. .-..+
T Consensus 220 v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs-----~d~~i 286 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGND------NVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGT-----MDKQI 286 (401)
T ss_dssp EEEEEECTTSSEEEEEETT------SCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCT-----TTCEE
T ss_pred eeEEEEcCCCCEEEEEeCC------CeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCC-----CCCEE
Confidence 222222 55677777755 458899998764322 1111 1112223333 34577766411 12468
Q ss_pred EEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEE--EcCCCeEEEEeCCCCceEEeccCCCccC
Q 012701 318 EEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAA--DYADMEVRKYDKERRLWFTIGRLPERAN 394 (458)
Q Consensus 318 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~--gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 394 (458)
..||+.+.+-...-. ... .. ..++.. ++..+++ |...+.|.+||..+.....+..++....
T Consensus 287 ~i~d~~~~~~~~~~~--~~~-~v-------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~ 350 (401)
T 4aez_A 287 HFWNAATGARVNTVD--AGS-QV-------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT 350 (401)
T ss_dssp EEEETTTCCEEEEEE--CSS-CE-------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS
T ss_pred EEEECCCCCEEEEEe--CCC-cE-------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC
Confidence 899998765432211 110 01 022222 4444444 4477899999999887776654433222
Q ss_pred CCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 395 SMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 395 ~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
.. ..+ ....++.+++.||.+ ..+.+|+........+.
T Consensus 351 ~v--~~~-~~s~dg~~l~s~~~d------g~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 351 RV--LYS-ALSPDGRILSTAASD------ENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp CC--CEE-EECTTSSEEEEECTT------SEEEEEECCC-------
T ss_pred CE--EEE-EECCCCCEEEEEeCC------CcEEEEECCCCcccccc
Confidence 11 112 223356677777643 25788888665444443
No 103
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.18 Score=48.70 Aligned_cols=136 Identities=7% Similarity=-0.015 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCceeeCCCCCCCC--------------ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPR--------------CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP 282 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r--------------~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (458)
...+.+||..+++....-..+... ....++...+..+++|+.+ ..+.+||..+++-...-
T Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~~~~~~ 243 (425)
T 1r5m_A 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------GAIFVYQITEKTPTGKL 243 (425)
T ss_dssp TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------GCEEEEETTCSSCSEEE
T ss_pred CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------CeEEEEEcCCCceeeee
Confidence 346888999877653322221111 0122223333345666644 46889999876421110
Q ss_pred CCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceE-EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-
Q 012701 283 SMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWT-EIPNMSPARGGAARGTEMPASAEAPPLVAVV- 359 (458)
Q Consensus 283 ~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~-~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~- 359 (458)
.. ........+.. ++++++.|+.+ ..+.+||+.+.+-. .+.. ....-. .++..
T Consensus 244 ~~-~~~~i~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~--~~~~i~--------------~~~~~~ 299 (425)
T 1r5m_A 244 IG-HHGPISVLEFNDTNKLLLSASDD-------GTLRIWHGGNGNSQNCFYG--HSQSIV--------------SASWVG 299 (425)
T ss_dssp CC-CSSCEEEEEEETTTTEEEEEETT-------SCEEEECSSSBSCSEEECC--CSSCEE--------------EEEEET
T ss_pred cc-CCCceEEEEECCCCCEEEEEcCC-------CEEEEEECCCCccceEecC--CCccEE--------------EEEECC
Confidence 10 11111223333 66677777654 25788888765421 1111 000001 33444
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 360 NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
++ +++.++..+.|.+||..+.+-
T Consensus 300 ~~-~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 300 DD-KVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp TT-EEEEEETTSEEEEEETTTTEE
T ss_pred CC-EEEEEeCCCcEEEEECCCCcE
Confidence 45 777777889999999987653
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.8 Score=45.27 Aligned_cols=150 Identities=5% Similarity=-0.056 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcC--CCceeeC-CCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 202 TELLVFGRELTAHHISHVIYRYSIL--TNSWSSG-MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
..|++.|+. ...+.+||.. ++..... .....+..-.+++.. ++..+++|+.+ ..++.|+..+..
T Consensus 115 ~~l~~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~------g~v~~~~~~~~~ 182 (450)
T 2vdu_B 115 SRLIACADS------DKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF------GDVYSIDINSIP 182 (450)
T ss_dssp SEEEEEEGG------GTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTSCC
T ss_pred CEEEEEECC------CCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC------CcEEEEecCCcc
Confidence 345567643 3568889987 4433221 100111111122222 45555666543 457888887654
Q ss_pred EEE--cCCCCCCCc-ceeEE-EEC---CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCc
Q 012701 278 WKV--LPSMKNPRK-MCSGV-FMD---GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASA 350 (458)
Q Consensus 278 W~~--~~~~p~~r~-~~~~~-~~~---g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~ 350 (458)
-.. +..+..... -.+++ .-+ +++++.|+.+ ..|.+||+.+.+....- .......
T Consensus 183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~--~~~h~~~---------- 243 (450)
T 2vdu_B 183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-------EHIKISHYPQCFIVDKW--LFGHKHF---------- 243 (450)
T ss_dssp CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-------SCEEEEEESCTTCEEEE--CCCCSSC----------
T ss_pred cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-------CcEEEEECCCCceeeee--ecCCCCc----------
Confidence 321 111111111 11222 346 7788887765 35788888766532210 0001110
Q ss_pred CCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 351 EAPPLVAVVNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 351 ~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
...++..++.+++.|+.++.|.+||..+.+-.
T Consensus 244 --v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 244 --VSSICCGKDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp --EEEEEECSTTEEEEEESSSEEEEEETTTCCEE
T ss_pred --eEEEEECCCCEEEEEeCCCeEEEEECCCCcEe
Confidence 00222227778888888899999999887643
No 105
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.25 E-value=0.49 Score=44.91 Aligned_cols=185 Identities=13% Similarity=0.150 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCC-CCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMN-APRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p-~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.+++.||. ...+.+||..+.. ......+. ....-.++.. -++. ++.|+.+ ..+.+||..++
T Consensus 108 ~~~~l~s~~~------d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~ 174 (340)
T 1got_B 108 SGNYVACGGL------DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD------TTCALWDIETG 174 (340)
T ss_dssp TSSEEEEEET------TCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEEeC------CCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC------CcEEEEECCCC
Confidence 4555566653 3568888887653 11111111 1111112222 2455 4555544 45888999887
Q ss_pred cEEEcCCCCCCCcc-eeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 277 TWKVLPSMKNPRKM-CSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 277 ~W~~~~~~p~~r~~-~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
.-... +...... .+.++ -++++++.|+.+ ..+..||+.+..-... +.. .... -.
T Consensus 175 ~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d-------~~v~~wd~~~~~~~~~--~~~-h~~~------------v~ 230 (340)
T 1got_B 175 QQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD-------ASAKLWDVREGMCRQT--FTG-HESD------------IN 230 (340)
T ss_dssp EEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCSEEEE--ECC-CSSC------------EE
T ss_pred cEEEE--EcCCCCceEEEEECCCCCEEEEEeCC-------CcEEEEECCCCeeEEE--EcC-CcCC------------EE
Confidence 54321 1111111 12222 267788887765 3578899887653221 100 0010 00
Q ss_pred EEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 355 LVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
+++.. ++.+++.|+.++.|.+||..+.+-...-..+.... + -.++. ..++++++.|+.+. .+.+|+..
T Consensus 231 ~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~---~-v~~~~~s~~g~~l~~g~~d~------~i~vwd~~ 300 (340)
T 1got_B 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC---G-ITSVSFSKSGRLLLAGYDDF------NCNVWDAL 300 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS---C-EEEEEECTTSSEEEEEETTS------EEEEEETT
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc---c-eEEEEECCCCCEEEEECCCC------eEEEEEcc
Confidence 22222 67788888888999999998765322211111110 0 01222 23567777776432 46677754
No 106
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=96.24 E-value=0.74 Score=42.64 Aligned_cols=202 Identities=11% Similarity=-0.060 Sum_probs=102.5
Q ss_pred cceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCC
Q 012701 165 LLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPR 240 (458)
Q Consensus 165 ~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r 240 (458)
...+.++|+.++ .|+.-..-.. . . ....+.-++.||+.+ .+.++.||+ +++ |+.-.+ ...
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~-~-~---~~~~~~pdG~ilvs~--------~~~V~~~d~-~G~~~W~~~~~--~~~ 77 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGW-E-C---NSVAATKAGEILFSY--------SKGAKMITR-DGRELWNIAAP--AGC 77 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTC-C-C---CEEEECTTSCEEEEC--------BSEEEEECT-TSCEEEEEECC--TTC
T ss_pred CCEEEEEECCCCeEEEEeCCCccC-C-C---cCeEECCCCCEEEeC--------CCCEEEECC-CCCEEEEEcCC--CCc
Confidence 345677888776 3553221110 1 0 112233477788743 245899999 553 654331 111
Q ss_pred ceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC-cEEEc-C-CCCCC--CcceeEEEECCEEEEEccccCCCCccc
Q 012701 241 CLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ-TWKVL-P-SMKNP--RKMCSGVFMDGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 241 ~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~-~-~~p~~--r~~~~~~~~~g~lyv~GG~~~~~~~~~ 314 (458)
..+++... ++.+++....+ ...+..+|+.-. .|+.. . ..+.+ .........+|.+++....+
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~------- 145 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT------- 145 (276)
T ss_dssp EEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-------
T ss_pred cccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-------
Confidence 22333333 56666654421 146778887443 24432 1 11111 11122334577777654322
Q ss_pred ceEEEEECCCC-ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCc--eEEec-cC
Q 012701 315 TCGEEYDLETE-TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRL--WFTIG-RL 389 (458)
Q Consensus 315 ~~v~~yd~~~~-~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~--W~~v~-~l 389 (458)
..+.+||++-+ .|+.-.. . ..+ .+... ++.+++.+...+.|..+|+.+++ |+.-. .+
T Consensus 146 ~~v~~~d~~G~~~w~~~~~--~--~~~--------------~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~ 207 (276)
T 3no2_A 146 SEVREIAPNGQLLNSVKLS--G--TPF--------------SSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI 207 (276)
T ss_dssp TEEEEECTTSCEEEEEECS--S--CCC--------------EEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS
T ss_pred CEEEEECCCCCEEEEEECC--C--Ccc--------------ceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC
Confidence 46889998722 2654322 0 111 33333 77888888777889999999654 66542 22
Q ss_pred CCccCCCCcccEEEEEeCCEEEEEc
Q 012701 390 PERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 390 p~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
+..+. ..-..+....++.+||..
T Consensus 208 ~~~~l--~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 208 EGVQL--FFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp BSCCC--SEEEEEEECTTSCEEEEE
T ss_pred CCccc--cccccceEcCCCCEEEEe
Confidence 22111 111122334578899886
No 107
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.23 E-value=0.16 Score=54.76 Aligned_cols=178 Identities=7% Similarity=-0.016 Sum_probs=99.4
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC----CCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN----APR 240 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----~~r 240 (458)
.-+..||+.++++..+........... -.+++.- ++.|++-. . ..+++||+.+++|+...... .+.
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~~~-v~~i~~d~~g~lwigt-------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVNEN-VYAILPDGEGNLWLGT-------L-SALVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSCSC-EEEEEECSSSCEEEEE-------S-SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred CceeEEeCCCCcEEEeecCCCCcCCCe-eEEEEECCCCCEEEEe-------c-CceeEEeCCCCeEEEccccccccccCC
Confidence 457788998888777653211110000 0111111 45666653 1 45899999999998775331 111
Q ss_pred ce-eeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC---C-CCCcceeEEEE--CCEEEEEccccCCCCc
Q 012701 241 CL-FGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM---K-NPRKMCSGVFM--DGKFYVIGGIGGSDSK 312 (458)
Q Consensus 241 ~~-~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p-~~r~~~~~~~~--~g~lyv~GG~~~~~~~ 312 (458)
.. .+.... ++.||+... ..+.+||+.++++ ..... + .+-........ +|+|++...
T Consensus 498 ~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~------- 561 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR------- 561 (795)
T ss_dssp CCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------
T ss_pred ceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------
Confidence 11 122222 567777532 3488899998888 43311 1 11111122222 577877421
Q ss_pred ccceEEEEECCCCceEEcCC---CCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 313 VLTCGEEYDLETETWTEIPN---MSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 313 ~~~~v~~yd~~~~~W~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
..+.+||+.+++++.+.. +|.... . +++.- +|.|++.+ .+.+.+||+.+++++...
T Consensus 562 --~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~--------------~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 562 --EGFYCFNEKDKQIKRYNTTNGLPNNVV-Y--------------GILEDSFGRLWLST--NRGISCFNPETEKFRNFT 621 (795)
T ss_dssp --SCEEEEETTTTEEEEECGGGTCSCSCE-E--------------EEEECTTSCEEEEE--TTEEEEEETTTTEEEEEC
T ss_pred --CCceeECCCCCcEEEeCCCCCCchhhe-E--------------EEEECCCCCEEEEc--CCceEEEcCCCCcEEEcC
Confidence 137889999998887642 222110 0 22222 57888876 467999999999988764
No 108
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=96.21 E-value=0.065 Score=50.88 Aligned_cols=198 Identities=14% Similarity=0.066 Sum_probs=98.9
Q ss_pred EEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEE-e-CCEEEEEcCCCCC-----------cCccceEEEEEc
Q 012701 159 VYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-V-GTELLVFGRELTA-----------HHISHVIYRYSI 225 (458)
Q Consensus 159 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~-~~~lyv~GG~~~~-----------~~~~~~v~~yd~ 225 (458)
||+......+..||+.++....+........+.. ...++. - ++.||+.-..... ......+++||+
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKW-LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEEESEETTEECSC-EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEEECCCCEEEEeCCCCEEEEecccCCCCcccc-cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 3443333346778887665444432111111111 111222 2 5688886421100 012357999999
Q ss_pred CCCceeeCC-CCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCC---CcEEEcCCCCCCCcceeEEEE--C
Q 012701 226 LTNSWSSGM-RMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSET---QTWKVLPSMKNPRKMCSGVFM--D 297 (458)
Q Consensus 226 ~t~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t---~~W~~~~~~p~~r~~~~~~~~--~ 297 (458)
.+++.+.+. .+..| .+.+.. ++.|||.-.. ...+.+|++.. ...+.+..++. ...+.+ +
T Consensus 173 ~~~~~~~~~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~ 239 (322)
T 2fp8_A 173 STKETTLLLKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNAD 239 (322)
T ss_dssp TTTEEEEEEEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTT
T ss_pred CCCEEEEeccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEECCC
Confidence 888765432 11111 223333 3468888332 36789999875 23444333221 333333 5
Q ss_pred CEEEEEccccCCC---CcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEE
Q 012701 298 GKFYVIGGIGGSD---SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 374 (458)
Q Consensus 298 g~lyv~GG~~~~~---~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~ 374 (458)
|+|||........ ......+.+||+....-..+.. |.... . ..+..++..+++||+.+...+.|.
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~~-~----------~~~~~~~~~~g~L~v~~~~~~~i~ 307 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPFA-G----------EHFEQIQEHDGLLYIGTLFHGSVG 307 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTTT-T----------SCCCEEEEETTEEEEECSSCSEEE
T ss_pred CCEEEEecCcccccccCCCccEEEEECCCCCEEEEEEC-CCCCc-c----------ccceEEEEeCCEEEEeecCCCceE
Confidence 7899875331000 0112468899987554444432 21110 0 011245667899999987888999
Q ss_pred EEeCCCCc
Q 012701 375 KYDKERRL 382 (458)
Q Consensus 375 ~yd~~~~~ 382 (458)
+|++..+.
T Consensus 308 ~~~~~~~~ 315 (322)
T 2fp8_A 308 ILVYDKKG 315 (322)
T ss_dssp EEEC----
T ss_pred EEeccccc
Confidence 99986543
No 109
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.19 E-value=0.13 Score=49.66 Aligned_cols=146 Identities=9% Similarity=0.005 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC---CCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN---APRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.+++.+ ....|.+||+.+++-....... ....-.+++.. ++..++.|+.+ ..+.+||..++
T Consensus 105 d~~~l~~s-------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d------g~v~iwd~~~~ 171 (357)
T 4g56_B 105 EKGILVAS-------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD------FSVKVWDLSQK 171 (357)
T ss_dssp TTEEEEEE-------TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTT
T ss_pred CCCEEEEE-------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCC
Confidence 55655543 2345888888776532222111 11111122222 55667777765 35888999887
Q ss_pred cEEEcCCCCCCCcce-eEEEE-CC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 277 TWKVLPSMKNPRKMC-SGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~-~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
+-... +....... ++++. ++ .+++.++.+ ..+..||+.+.+-.............
T Consensus 172 ~~~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~~~~~~~~~~~~~~~~~v------------- 229 (357)
T 4g56_B 172 AVLKS--YNAHSSEVNCVAACPGKDTIFLSCGED-------GRILLWDTRKPKPATRIDFCASDTIP------------- 229 (357)
T ss_dssp EEEEE--ECCCSSCEEEEEECTTCSSCEEEEETT-------SCEEECCTTSSSCBCBCCCTTCCSCE-------------
T ss_pred cEEEE--EcCCCCCEEEEEEccCCCceeeeeccC-------CceEEEECCCCceeeeeeeccccccc-------------
Confidence 64322 11111111 22222 33 466666654 24778888776432211111111111
Q ss_pred CEEEEE---CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 354 PLVAVV---NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 354 ~~~~~~---~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
..+.. ++.+++.|+..+.|.+||+.+.+
T Consensus 230 -~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 230 -TSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp -EEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred -cchhhhhcccceEEEeecccceeEEECCCCc
Confidence 22222 45688888888999999987754
No 110
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=96.17 E-value=0.16 Score=47.72 Aligned_cols=218 Identities=6% Similarity=0.009 Sum_probs=106.9
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCce-e-eCCCCCCC
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNSW-S-SGMRMNAP 239 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~-~~~~~p~~ 239 (458)
...+..||+.+++....-..+... . .+++ +..||+.+. ....+++||+.+++. . .+..-..+
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~~~~------~-~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~ 85 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLGYDF------V-DTAITSDCSNVVVTSD------FCQTLVQIETQLEPPKVVAIQEGQSS 85 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECCCCE------E-EEEECSSSCEEEEEES------TTCEEEEEECSSSSCEEEEEEECSSC
T ss_pred CCeEEEEeCcccceeeeEEccCCc------c-eEEEcCCCCEEEEEeC------CCCeEEEEECCCCceeEEecccCCCC
Confidence 346788999988875543332211 1 2333 345777764 234799999998874 2 22211122
Q ss_pred CceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCE-EEEEccccCCCCcccc
Q 012701 240 RCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGK-FYVIGGIGGSDSKVLT 315 (458)
Q Consensus 240 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~ 315 (458)
. ++.+.. +..|| ++...+ ....+.+||+.+++-...- +.....+..++. +|+ ||+.+... .
T Consensus 86 ~--~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~-------~ 150 (331)
T 3u4y_A 86 M--ADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFISTI--PIPYDAVGIAISPNGNGLILIDRSS-------A 150 (331)
T ss_dssp C--CCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEEEE--ECCTTEEEEEECTTSSCEEEEEETT-------T
T ss_pred c--cceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEEEE--ECCCCccceEECCCCCEEEEEecCC-------C
Confidence 2 212222 44666 322111 1137999999988754332 222222333333 554 77765432 2
Q ss_pred e-EEEEECCCCc-eEEc--CCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCce-EEecc
Q 012701 316 C-GEEYDLETET-WTEI--PNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRLW-FTIGR 388 (458)
Q Consensus 316 ~-v~~yd~~~~~-W~~i--~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~W-~~v~~ 388 (458)
. +.+|++..+. .... ..++... .. ..++.. ++ .||+.+...+.|.+||+.+.+. ..+..
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~-~~-------------~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~ 216 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGT-RP-------------FNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNA 216 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSS-SE-------------EEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEE
T ss_pred ceEEEEEECCCCcEeecCCccccCCC-Cc-------------cceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeee
Confidence 3 5666665422 1111 0011110 01 023332 44 5888887778999999988775 22333
Q ss_pred CCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 389 LPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 389 lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++..... .++++..-+..||+.... ...+.+|++..
T Consensus 217 ~~~~~~~---~~~~~spdg~~l~v~~~~------~~~i~~~d~~~ 252 (331)
T 3u4y_A 217 VGTNNLP---GTIVVSRDGSTVYVLTES------TVDVFNFNQLS 252 (331)
T ss_dssp EECSSCC---CCEEECTTSSEEEEECSS------EEEEEEEETTT
T ss_pred ccCCCCC---ceEEECCCCCEEEEEEcC------CCEEEEEECCC
Confidence 3322211 123332223447776541 22455666543
No 111
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.16 E-value=0.064 Score=51.57 Aligned_cols=213 Identities=10% Similarity=0.033 Sum_probs=95.4
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCc-eeeCCCCCCCCcee
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNS-WSSGMRMNAPRCLF 243 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~ 243 (458)
.+..||..++.|..+..+..... .-..++. ++.+++.|+. ...+.+||..++. |.....+.......
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~------d~~v~vwd~~~~~~~~~~~~~~~~~~~v 103 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHDK----IVTCVDWAPKSNRIVTCSQ------DRNAYVYEKRPDGTWKQTLVLLRLNRAA 103 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCSS----CEEEEEECTTTCCEEEEET------TSSEEEC------CCCCEEECCCCSSCE
T ss_pred EEEEEEccCCceEEEEEEecCCc----eEEEEEEeCCCCEEEEEeC------CCeEEEEEcCCCCceeeeeEecccCCce
Confidence 35567777777766655543211 1111222 4556666643 3468899998876 54433222212222
Q ss_pred eEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc-EEEcCCCCC-CCc-ceeEEEE-CCEEEEEccccCCCCcccceE
Q 012701 244 GSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLPSMKN-PRK-MCSGVFM-DGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 244 ~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~-~r~-~~~~~~~-~g~lyv~GG~~~~~~~~~~~v 317 (458)
.++.+ ++.+++.|+.+ ..+.+||..+++ |..+..+.. ... -.+.+.. ++++++.|+.+ ..+
T Consensus 104 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-------~~i 170 (377)
T 3dwl_C 104 TFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD-------RKA 170 (377)
T ss_dssp EEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS-------SCE
T ss_pred EEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC-------CEE
Confidence 22222 45666777654 357788887764 333322222 111 1222222 66777777765 347
Q ss_pred EEEECCCCceEEcCCC-------CCC----CCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCce-
Q 012701 318 EEYDLETETWTEIPNM-------SPA----RGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLW- 383 (458)
Q Consensus 318 ~~yd~~~~~W~~i~~~-------p~~----r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W- 383 (458)
..||+.+......+.. +.. ..++ ......+.. ++++++.++.++.|.+||..+..-
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS----------GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCC----------SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcccC----------CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 7888765432221100 000 0011 000012222 667777888888999999887653
Q ss_pred -EEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 384 -FTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 384 -~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
..+..+...... ........++++++.|+
T Consensus 241 ~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 241 PRALITVKLSQLP---LRSLLWANESAIVAAGY 270 (377)
T ss_dssp EEECCCEECSSSC---EEEEEEEETTEEEEEES
T ss_pred ceeeEeecCCCCc---eEEEEEcCCCCEEEEEc
Confidence 113222221111 01122234677777775
No 112
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.16 E-value=0.35 Score=45.17 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=89.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.+++.|+ ....+.+||..+++-... +. ....-.+++.. ++.+++.|+.+ ..+.+||..++.
T Consensus 66 ~~~~l~s~s------~d~~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~- 130 (304)
T 2ynn_A 66 RKNWIIVGS------DDFRIRVFNYNTGEKVVD--FEAHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNW- 130 (304)
T ss_dssp GGTEEEEEE------TTSEEEEEETTTCCEEEE--EECCSSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGTT-
T ss_pred CCCEEEEEC------CCCEEEEEECCCCcEEEE--EeCCCCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCCc-
Confidence 445555554 345688999887653211 11 11111222222 45566777765 457888887652
Q ss_pred EEcCCCCCCCc-ceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 279 KVLPSMKNPRK-MCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 279 ~~~~~~p~~r~-~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
.....+..... -.+.++. ++.+++.|+.+ ..+..||+.+.. ..... .... ..
T Consensus 131 ~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-------~~v~iwd~~~~~~~~~~~~--~~~~-~v------------- 187 (304)
T 2ynn_A 131 ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-------RTVKVWSLGQSTPNFTLTT--GQER-GV------------- 187 (304)
T ss_dssp EEEEEECCCCSCEEEEEECTTCTTEEEEEETT-------SEEEEEETTCSSCSEEEEC--CCTT-CE-------------
T ss_pred chhhhhcccCCcEEEEEECCCCCCEEEEEeCC-------CeEEEEECCCCCccceecc--CCcC-cE-------------
Confidence 11111111111 1222232 45677777765 367888886543 11110 0000 00
Q ss_pred CEEEEE----CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEE
Q 012701 354 PLVAVV----NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNS 428 (458)
Q Consensus 354 ~~~~~~----~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~ 428 (458)
..... ++.+++.|+.++.|.+||..+.+- +..+..... .-..++ ..++.+++.|+.+. .+.+
T Consensus 188 -~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~h~~----~v~~~~~~p~~~~l~s~s~Dg------~i~i 254 (304)
T 2ynn_A 188 -NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--VATLEGHMS----NVSFAVFHPTLPIIISGSEDG------TLKI 254 (304)
T ss_dssp -EEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--EEEEECCSS----CEEEEEECSSSSEEEEEETTS------CEEE
T ss_pred -EEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeCCCCC----CEEEEEECCCCCEEEEEcCCC------eEEE
Confidence 11222 456777788889999999987642 222222111 011222 23456777776542 4677
Q ss_pred eecCC
Q 012701 429 WVPSE 433 (458)
Q Consensus 429 ~~~~~ 433 (458)
|+...
T Consensus 255 Wd~~~ 259 (304)
T 2ynn_A 255 WNSST 259 (304)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 77643
No 113
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.00093 Score=62.70 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=40.9
Q ss_pred CCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcEEEee
Q 012701 105 LIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLR 149 (458)
Q Consensus 105 l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~y~~g 149 (458)
.|..||+|++..||++|+..++.++..|||+||.++.++.++..-
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~ 48 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYF 48 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 466899999999999999999999999999999999999887553
No 114
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.14 E-value=0.19 Score=49.62 Aligned_cols=184 Identities=6% Similarity=-0.123 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
..++++|+.+++...+...+. ...+.+.. ++ +|++.+..++ ...+++||+.+++...+..... .....+.
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~ 274 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS--NNTEPTW 274 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS--CEEEEEE
T ss_pred cEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC--cccceEE
Confidence 579999999988766544322 11222222 34 5665555432 2579999999988776654321 1112222
Q ss_pred -ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcC---C
Q 012701 296 -MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYA---D 370 (458)
Q Consensus 296 -~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~---~ 370 (458)
-+|+.+++++... ....++.+|+.+.+-..+.... .... .++. -+++.++++.. .
T Consensus 275 spdg~~l~~~s~~~----g~~~i~~~d~~~~~~~~l~~~~--~~~~--------------~~~~spdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 275 FPDSQNLAFTSDQA----GRPQVYKVNINGGAPQRITWEG--SQNQ--------------DADVSSDGKFMVMVSSNGGQ 334 (415)
T ss_dssp CTTSSEEEEEECTT----SSCEEEEEETTSSCCEECCCSS--SEEE--------------EEEECTTSSEEEEEEECSSC
T ss_pred CCCCCEEEEEECCC----CCcEEEEEECCCCCEEEEecCC--Cccc--------------CeEECCCCCEEEEEECcCCc
Confidence 2666545444221 1246889999887755543211 1000 1222 25554444332 3
Q ss_pred CeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 371 MEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 371 ~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
..|++||+.+++...+..-. .. ... ...-+++.+++++... +...+..|+.+ ....+.+
T Consensus 335 ~~i~~~d~~~~~~~~l~~~~--~~----~~~-~~spdg~~l~~~s~~~---~~~~l~~~d~~--g~~~~~l 393 (415)
T 2hqs_A 335 QHIAKQDLATGGVQVLSSTF--LD----ETP-SLAPNGTMVIYSSSQG---MGSVLNLVSTD--GRFKARL 393 (415)
T ss_dssp EEEEEEETTTCCEEECCCSS--SC----EEE-EECTTSSEEEEEEEET---TEEEEEEEETT--SCCEEEC
T ss_pred eEEEEEECCCCCEEEecCCC--Cc----CCe-EEcCCCCEEEEEEcCC---CccEEEEEECC--CCcEEEe
Confidence 58999999998887664322 11 112 2234566666655322 23456667664 3444444
No 115
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.12 E-value=1.4 Score=46.49 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=73.5
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCC--------CceeeEEEeCCEEEEEeccCCCCCccCe
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSS 267 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 267 (458)
++.++.||+.. ..+.++.+|..|++ |+.-...+.. ....+.++.+++||+... -..
T Consensus 74 ~v~~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~ 139 (677)
T 1kb0_A 74 VVVDGIMYVSA-------SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGR 139 (677)
T ss_dssp EEETTEEEEEC-------GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSE
T ss_pred EEECCEEEEEC-------CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCE
Confidence 66799999986 34579999998874 8765443211 112345567888888632 256
Q ss_pred EEEEeCCCCc--EEEcCC-C-CC-CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEc
Q 012701 268 AEMYNSETQT--WKVLPS-M-KN-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEI 330 (458)
Q Consensus 268 v~~yd~~t~~--W~~~~~-~-p~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i 330 (458)
+..+|..|++ |+.-.. - +. .....+.++.++++|+..+.. +......+..||..+.+ |+.-
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA--EYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccc--ccCCCCEEEEEECCCCcEEEEec
Confidence 8999999886 876432 1 11 112233456789988754322 11234578999998876 8753
No 116
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.07 E-value=1.4 Score=47.36 Aligned_cols=205 Identities=9% Similarity=0.028 Sum_probs=108.1
Q ss_pred ceEEEEecCCCcEEeCCCCCCCcc---ccccCceEEE-eCCE-EEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC--C
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNEC---FMCSDKESLA-VGTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN--A 238 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~---~~~~~~~~~~-~~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~ 238 (458)
.-+..||+.++++......+.... ....-.+++. -++. |+|-. ...-+++||+.+++++...... .
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt-------~~~Gl~~~d~~~~~~~~~~~~~~~l 449 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT-------HAGGLSILHRNSGQVENFNQRNSQL 449 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-------TTTEEEEEETTTCCEEEECTTTSCC
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-------CcCceeEEeCCCCcEEEeecCCCCc
Confidence 357788988888877653221000 0000111222 2455 66532 2246899999999887764311 1
Q ss_pred C-CceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC----CCCCcceeEEEE--CCEEEEEccccCCC
Q 012701 239 P-RCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM----KNPRKMCSGVFM--DGKFYVIGGIGGSD 310 (458)
Q Consensus 239 ~-r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~----p~~r~~~~~~~~--~g~lyv~GG~~~~~ 310 (458)
+ ..-.+.+.. ++.||+... ..+.+||+.+++|+..... ..+......... +|+|++...
T Consensus 450 ~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----- 516 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLGTL--------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE----- 516 (795)
T ss_dssp SCSCEEEEEECSSSCEEEEES--------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----
T ss_pred CCCeeEEEEECCCCCEEEEec--------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-----
Confidence 1 111222222 467776532 3488999999999887533 111111122222 577877532
Q ss_pred CcccceEEEEECCCCceEEcCCCCCC---CCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 311 SKVLTCGEEYDLETETWTEIPNMSPA---RGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~i~~~p~~---r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
..+.+||+.++++ .+...... .... -.+++. .+|.|++... +.+.+||+.+++++..
T Consensus 517 ----~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~------------i~~i~~d~~g~lWigT~--~Gl~~~d~~~~~~~~~ 577 (795)
T 4a2l_A 517 ----EGLSVFKQEGLDI-QKASILPVSNVTKLF------------TNCIYEASNGIIWVGTR--EGFYCFNEKDKQIKRY 577 (795)
T ss_dssp ----SCEEEEEEETTEE-EECCCSCSCGGGGSC------------EEEEEECTTSCEEEEES--SCEEEEETTTTEEEEE
T ss_pred ----CceEEEeCCCCeE-EEecCCCCCCCCCCe------------eEEEEECCCCCEEEEeC--CCceeECCCCCcEEEe
Confidence 2378899988888 44321000 0011 002222 2578888653 3799999999998876
Q ss_pred cc---CCCccCCCCcccEEEEEe-CCEEEEEcC
Q 012701 387 GR---LPERANSMNGWGLAFRAC-GDRLIVIGG 415 (458)
Q Consensus 387 ~~---lp~~~~~~~~~~~a~~~~-~~~lyv~GG 415 (458)
.. +|... -.+++.. ++.|++.+.
T Consensus 578 ~~~~gl~~~~------i~~i~~d~~g~lWi~t~ 604 (795)
T 4a2l_A 578 NTTNGLPNNV------VYGILEDSFGRLWLSTN 604 (795)
T ss_dssp CGGGTCSCSC------EEEEEECTTSCEEEEET
T ss_pred CCCCCCchhh------eEEEEECCCCCEEEEcC
Confidence 42 33221 1233332 567887763
No 117
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.055 Score=51.54 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCC--CceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILT--NSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++..++.|+. ...+.+||..+ ..++.+..+........++.+ ++.+++.|+.+ ..+.+||..++
T Consensus 118 ~g~~las~s~------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D------~~i~iW~~~~~ 185 (330)
T 2hes_X 118 DGYYLATCSR------DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD------DTVRIWKDYDD 185 (330)
T ss_dssp TSCEEEEEET------TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEEEETT
T ss_pred CCCEEEEEeC------CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC------CeEEEEECCCC
Confidence 4555566643 35688888843 234333222211111222222 45677777766 35778888777
Q ss_pred cEEEcCCCCCCCcceeEE-EE-C--CEEEEEccccCCCCcccceEEEEECCC------CceEEcCCCCCCCCCCCCCCCC
Q 012701 277 TWKVLPSMKNPRKMCSGV-FM-D--GKFYVIGGIGGSDSKVLTCGEEYDLET------ETWTEIPNMSPARGGAARGTEM 346 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~-~~-~--g~lyv~GG~~~~~~~~~~~v~~yd~~~------~~W~~i~~~p~~r~~~~~~~~~ 346 (458)
.|+.+..+.........+ +. + +.+++.|+.+ ..+.+||+.+ ..|..+..++......
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~------ 252 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD-------STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ------ 252 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETT-------SCEEEEEEEEECTTSCEEEEEEEECCSCCSSC------
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCC-------CeEEEEEecCCCccccceeEEeeecccccccc------
Confidence 776654443222222222 22 2 3455666654 2355565543 2354433333211111
Q ss_pred CCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCCCCeee
Q 012701 347 PASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIE 425 (458)
Q Consensus 347 ~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~~~~~~ 425 (458)
-..++...+.+++.++.++.|.+||..++.|..+...........-...++... ++.+++.||.+. .
T Consensus 253 ------v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg------~ 320 (330)
T 2hes_X 253 ------VYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG------I 320 (330)
T ss_dssp ------EEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS------E
T ss_pred ------eEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC------c
Confidence 002333345567777788999999999988876643221111000011122111 466777777532 5
Q ss_pred EEEeecC
Q 012701 426 LNSWVPS 432 (458)
Q Consensus 426 ~~~~~~~ 432 (458)
+.+|+.+
T Consensus 321 v~~W~~~ 327 (330)
T 2hes_X 321 VNFWSLE 327 (330)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 6777764
No 118
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.06 E-value=0.29 Score=47.06 Aligned_cols=135 Identities=9% Similarity=0.021 Sum_probs=76.3
Q ss_pred cceEEEEEcCCCceeeCCCC-CCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc-cee
Q 012701 217 SHVIYRYSILTNSWSSGMRM-NAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK-MCS 292 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~ 292 (458)
...+.+||..+.+....-.. .....-.+++.. ++.+++.|+.+ ..+.+||..+.....+........ ..+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 168 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVIQVFAKTDSWDYWYCC 168 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEEEEEECCCCSSCCEEE
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCceEEEeccCCCCCCeEE
Confidence 34688999988876554333 122222233333 34667777654 468889998876665543222111 122
Q ss_pred EEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEEcC
Q 012701 293 GVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAADYA 369 (458)
Q Consensus 293 ~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~gg~ 369 (458)
.+. -++++++.|+.+ ..+..||+....-..+.... ... ..++.. ++. +++.++.
T Consensus 169 ~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~h~---~~v-------------~~~~~~~~~~~~l~s~~~ 225 (383)
T 3ei3_B 169 VDVSVSRQMLATGDST-------GRLLLLGLDGHEIFKEKLHK---AKV-------------THAEFNPRCDWLMATSSV 225 (383)
T ss_dssp EEEETTTTEEEEEETT-------SEEEEEETTSCEEEEEECSS---SCE-------------EEEEECSSCTTEEEEEET
T ss_pred EEECCCCCEEEEECCC-------CCEEEEECCCCEEEEeccCC---CcE-------------EEEEECCCCCCEEEEEeC
Confidence 222 366777777654 46888998654433332110 111 022222 344 7888888
Q ss_pred CCeEEEEeCCC
Q 012701 370 DMEVRKYDKER 380 (458)
Q Consensus 370 ~~~v~~yd~~~ 380 (458)
++.|.+||+.+
T Consensus 226 d~~i~iwd~~~ 236 (383)
T 3ei3_B 226 DATVKLWDLRN 236 (383)
T ss_dssp TSEEEEEEGGG
T ss_pred CCEEEEEeCCC
Confidence 89999999987
No 119
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.03 E-value=0.33 Score=45.33 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=73.2
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
.+++.|+.+ ..+.+||..+.+-...-.... ..-.++++ -++++++.|+.+ ..+..||+.+.+-..
T Consensus 186 ~~~~s~~~d------~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D-------g~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 186 PIIVSCGWD------KLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKD-------GQAMLWDLNEGKHLY 251 (340)
T ss_dssp CEEEEEETT------SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETT-------CEEEEEETTTTEEEE
T ss_pred cEEEEEcCC------CEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCC-------CeEEEEEeccCceee
Confidence 456666654 357889998876433211111 11112222 267788887765 357889987754322
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEe-cc-CC-CccCCCCcccEEEE-E
Q 012701 330 IPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTI-GR-LP-ERANSMNGWGLAFR-A 405 (458)
Q Consensus 330 i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v-~~-lp-~~~~~~~~~~~a~~-~ 405 (458)
. +.....-. .++...+..++.++..+.|.+||..+..-... .. .. .....+...-.+++ .
T Consensus 252 ~--~~~~~~v~--------------~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 252 T--LDGGDIIN--------------ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp E--EECSSCEE--------------EEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred e--ecCCceEE--------------eeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 1 11111111 23333444555666778999999887653222 11 10 00000111112222 2
Q ss_pred eCCEEEEEcCCCCCCCCeeeEEEeecCCC
Q 012701 406 CGDRLIVIGGPKASGEGFIELNSWVPSEG 434 (458)
Q Consensus 406 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 434 (458)
.++++++.||.+. .+.+|+...+
T Consensus 316 ~dg~~l~sgs~Dg------~v~iW~~~tG 338 (340)
T 4aow_A 316 ADGQTLFAGYTDN------LVRVWQVTIG 338 (340)
T ss_dssp TTSSEEEEEETTS------CEEEEEEEC-
T ss_pred CCCCEEEEEeCCC------EEEEEeCCCc
Confidence 3567777777543 4678887553
No 120
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.01 E-value=0.3 Score=45.98 Aligned_cols=153 Identities=11% Similarity=0.038 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-C---CEEEEEeccCCCCCccCeEEEEeCCCCc-
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-G---EIAILAGGSDLEGNILSSAEMYNSETQT- 277 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~---~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 277 (458)
.+++.|+.. .....+.+||..+++............-.+++.. + +.+++.|+.+ ..+.+||..++.
T Consensus 32 ~l~~~~s~~---~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 102 (357)
T 3i2n_A 32 KFVTMGNFA---RGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEM 102 (357)
T ss_dssp EEEEEEC-----CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSS
T ss_pred eEEEecCcc---CCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCc
Confidence 566666431 0145788999988876543222222121222222 2 4667777755 458889988764
Q ss_pred -EEEcCCCCCCCcceeEE-------EECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCC
Q 012701 278 -WKVLPSMKNPRKMCSGV-------FMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMP 347 (458)
Q Consensus 278 -W~~~~~~p~~r~~~~~~-------~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~ 347 (458)
-..+..... .-.+.. .-++++++.|+.+ ..+.+||+.+.. ...+..........
T Consensus 103 ~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~------- 166 (357)
T 3i2n_A 103 PVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPVQGENKRD------- 166 (357)
T ss_dssp CSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCCTTSCCCC-------
T ss_pred cEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCC-------CeEEEEeCCCCCCcceeccccCCCCCCc-------
Confidence 222211111 111111 1356677777654 357889988764 33333211110111
Q ss_pred CCcCCCCEEE-----EECCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 348 ASAEAPPLVA-----VVNNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 348 ~~~~~~~~~~-----~~~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
...++ .-++.+++.++..+.|.+||..+..-..
T Consensus 167 -----v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 167 -----CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp -----EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred -----eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence 00122 1367788888888999999998876433
No 121
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.00 E-value=0.27 Score=48.27 Aligned_cols=146 Identities=11% Similarity=0.087 Sum_probs=78.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+++.|+. ...+.+||..++.-...-...... -.+++. -++.+++.|+.++ .+.+||..+..-.
T Consensus 119 ~~~~l~s~s~------Dg~i~vwd~~~~~~~~~l~~h~~~-V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 119 VFSVMVSASE------DATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADM------TIKLWDFQGFECI 185 (410)
T ss_dssp SSSEEEEEES------SSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETTS------CCCEEETTSSCEE
T ss_pred CCCEEEEEeC------CCeEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEEeCCC------eEEEEeCCCCcee
Confidence 3456666653 356899999887543221111111 112222 2566777888663 4667888765422
Q ss_pred EcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..+.........+.+ ++..++.|+.+ ..+..||+.+..-... +.. .... ...+
T Consensus 186 --~~~~~h~~~V~~v~~~p~~~~l~s~s~D-------~~i~~wd~~~~~~~~~--~~~-h~~~-------------v~~~ 240 (410)
T 1vyh_C 186 --RTMHGHDHNVSSVSIMPNGDHIVSASRD-------KTIKMWEVQTGYCVKT--FTG-HREW-------------VRMV 240 (410)
T ss_dssp --ECCCCCSSCEEEEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEE--EEC-CSSC-------------EEEE
T ss_pred --EEEcCCCCCEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEE--EeC-CCcc-------------EEEE
Confidence 222222222222222 56677777765 3688899987653221 100 0111 0112
Q ss_pred EE--CCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 358 VV--NNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 358 ~~--~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
.. ++.+++.|+.++.|.+||..+..-.
T Consensus 241 ~~~~~g~~l~s~s~D~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 241 RPNQDGTLIASCSNDQTVRVWVVATKECK 269 (410)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 22 5678888888899999999877543
No 122
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.00 E-value=0.89 Score=41.41 Aligned_cols=185 Identities=10% Similarity=-0.023 Sum_probs=100.3
Q ss_pred EEEEEec-cceEEEEecCCCcEEeCCCCCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC
Q 012701 158 WVYFSCH-LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM 234 (458)
Q Consensus 158 ~l~~~~~-~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 234 (458)
.+|+... ...+..||+....-..+....... .+.++. .++.||+.-. ..+.++++++....-+.+.
T Consensus 49 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~-----p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 49 VVYWTDISEPSIGRASLHGGEPTTIIRQDLGS-----PEGIALDHLGRTIFWTDS------QLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp EEEEEETTTTEEEEEESSSCCCEEEECTTCCC-----EEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEE
T ss_pred EEEEEECCCCEEEEEecCCCCcEEEEECCCCC-----ccEEEEEecCCeEEEEEC------CCCEEEEEEcCCCCEEEEE
Confidence 3444332 356788888765432221111000 112232 2579998853 3457899998754433322
Q ss_pred CCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE-EEE--CCEEEEEccccCC
Q 012701 235 RMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG-VFM--DGKFYVIGGIGGS 309 (458)
Q Consensus 235 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~--~g~lyv~GG~~~~ 309 (458)
.....+ -...++. ++.||+..... ....++++++....-+.+.... .....+ ++. +++||+.-..
T Consensus 118 ~~~~~~-P~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~--- 187 (267)
T 1npe_A 118 DTGLVN-PRGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAG--- 187 (267)
T ss_dssp CSSCSS-EEEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETT---
T ss_pred ECCCCC-ccEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECC---
Confidence 111111 1233333 68999985321 1357888888654433332211 122333 332 4789997432
Q ss_pred CCcccceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 310 DSKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 310 ~~~~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
.+.|.+||+....-..+. .+.. |..++..++.||+.....+.|.++|+.+.+-.
T Consensus 188 ----~~~I~~~~~~g~~~~~~~~~~~~-----------------P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 188 ----THRAECLNPAQPGRRKVLEGLQY-----------------PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp ----TTEEEEEETTEEEEEEEEECCCS-----------------EEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ----CCEEEEEecCCCceEEEecCCCC-----------------ceEEEEeCCEEEEEECCCCeEEEEeCCCCCce
Confidence 357899999764322221 1111 12566678999999888889999999876543
No 123
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=95.99 E-value=2 Score=45.45 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=66.9
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCcc-cc---ccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNEC-FM---CSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-- 229 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~-~~---~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 229 (458)
.+|+......++++|..++ .|..-...+.... .. ......+..++.||+.. ....++.+|..|++
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-------~dg~l~AlDa~TG~~~ 144 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-------LDGRLEAIDAKTGQRA 144 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCCEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-------cCCEEEEEECCCCCEe
Confidence 3455544556888998876 5876443332110 00 01123455688888765 33568999999875
Q ss_pred eeeCCC-CCC--CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEc
Q 012701 230 WSSGMR-MNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVL 281 (458)
Q Consensus 230 W~~~~~-~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 281 (458)
|+.-.. -+. .....+-++.++.+|+..+.... .....+..||..|++ |+.-
T Consensus 145 W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 145 WSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF-GVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred eeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc-CCCCEEEEEECCCCcEEEEec
Confidence 876432 111 11222345568888875332211 124679999999986 8753
No 124
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.37 Score=45.43 Aligned_cols=154 Identities=11% Similarity=0.020 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCc--
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQT-- 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (458)
++..++.|+ ....+.+||..+++-...-..+ ..-.+++.. ++..+++++.+.. .....+.+||..+..
T Consensus 85 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~-~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 85 FTKYCVTGS------ADYSIKLWDVSNGQCVATWKSP--VPVKRVEFSPCGNYFLAILDNVM-KNPGSINIYEIERDSAT 155 (369)
T ss_dssp TSSEEEEEE------TTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSSEEEEEECCBT-TBCCEEEEEEEEECTTT
T ss_pred CCCEEEEEe------CCCeEEEEECCCCcEEEEeecC--CCeEEEEEccCCCEEEEecCCcc-CCCCEEEEEEecCCccc
Confidence 345555554 3357899999887653332211 111222222 4445555543311 123567777776542
Q ss_pred --EEEcCCCCC-----CCc--ceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCC-ce-EEcCCCCCCCCCCCCCC
Q 012701 278 --WKVLPSMKN-----PRK--MCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETE-TW-TEIPNMSPARGGAARGT 344 (458)
Q Consensus 278 --W~~~~~~p~-----~r~--~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W-~~i~~~p~~r~~~~~~~ 344 (458)
+......+. ... ....+. -+++++++|+.+ ..+.+||+.+. .- ..+.. .....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~---~~~~v---- 221 (369)
T 3zwl_B 156 HELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------GKISKYDVSNNYEYVDSIDL---HEKSI---- 221 (369)
T ss_dssp CCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------SEEEEEETTTTTEEEEEEEC---CSSCE----
T ss_pred eeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------CEEEEEECCCCcEeEEEEec---CCCce----
Confidence 222111110 000 112222 256677776654 36889999873 22 12211 11111
Q ss_pred CCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 345 EMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
..++.. ++.+++.++..+.|.+||..+..-...
T Consensus 222 ---------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 255 (369)
T 3zwl_B 222 ---------SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK 255 (369)
T ss_dssp ---------EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ---------eEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence 022222 667777788888999999988664433
No 125
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.96 E-value=1.4 Score=45.92 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=70.5
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEc-CCCc--eeeCCCCCC-----CCc---eeeEEE--eCCE----EEEEeccCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSI-LTNS--WSSGMRMNA-----PRC---LFGSAS--LGEI----AILAGGSDL 260 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~p~-----~r~---~~~~~~--~~~~----lyv~GG~~~ 260 (458)
++.++.||+.... ...++.+|. .|++ |+.-...+. ..+ ..+.++ .+++ ||+...
T Consensus 59 ~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 59 LVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp EEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred EEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 6679999998731 356899999 7764 877544321 111 123344 5666 877532
Q ss_pred CCCccCeEEEEeCCCCc--EEEcCCCCC-C-CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEc
Q 012701 261 EGNILSSAEMYNSETQT--WKVLPSMKN-P-RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEI 330 (458)
Q Consensus 261 ~~~~~~~v~~yd~~t~~--W~~~~~~p~-~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i 330 (458)
-..+..+|..|++ |+.-..-+. . ....+-++.++++|+-.+.. +......+..||.++.+ |+.-
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~--e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 ----DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGA--ELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCG--GGTCCCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccc--ccCCCCeEEEEECCCCcEEEEEc
Confidence 2468999999886 875322111 1 11223356799988743311 11123578999998765 8754
No 126
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.95 E-value=0.23 Score=46.83 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=97.8
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeC-CCCCCCCc
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSG-MRMNAPRC 241 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~-~~~p~~r~ 241 (458)
...++.||+.+++...+....... -..++. ++.||+...... .....+++||+.++....+ ........
T Consensus 65 ~~~i~~~d~~~~~~~~~~~~~~~~------~~~i~~~~dg~l~v~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFVSHKAN------PAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDNLQDIIEDLSTAYC 136 (333)
T ss_dssp TCEEEEECTTTCCEEEEEECSSSS------EEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred CCEEEEEeCCCCcEEEEeeCCCCC------cceEEECCCCcEEEEeCCCC--CCCceEEEEeCCCCEEEEEEccCccCCc
Confidence 346788999888776543111111 111332 567887753210 0224799999998876532 22111111
Q ss_pred eeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECC-EEEEEccccCCCCcccceEE
Q 012701 242 LFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDG-KFYVIGGIGGSDSKVLTCGE 318 (458)
Q Consensus 242 ~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~ 318 (458)
-...+.. ++.+|+.............+++||+.+++...+..- .......+. -+| .||+.... ...++
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~-------~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT-------ANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG-------GTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC-------CCeEE
Confidence 1222222 567887643221112235789999988776654210 011112222 245 47776432 24688
Q ss_pred EEECCCC--ceEEcC-----CCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 319 EYDLETE--TWTEIP-----NMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 319 ~yd~~~~--~W~~i~-----~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
+||+.++ ....+. .++.. .. +..++.- ++.||+.....+.|.+||+..+.-..+
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~-------------~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~ 269 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGH-EG-------------PDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI 269 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSS-SE-------------EEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred EEEecCCCcCcccccceEEEecCCC-CC-------------CCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEE
Confidence 8998642 332211 11100 00 1123332 678999876678899999965544444
No 127
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.94 E-value=0.56 Score=44.97 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC---C-C-CCcceeEEE-ECCEEEEEccccCCCCcccceEEEEEC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM---K-N-PRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDL 322 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p-~-~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~ 322 (458)
++ ++++|+.+ ..+.+||..+.+-...-.. . . .....+.++ -++++++.|+.++ ....+.+||+
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~----~~g~i~i~d~ 265 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN----SFGCITLYET 265 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET----TEEEEEEEET
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC----CCceEEEEEC
Confidence 45 66666644 4688999987753322111 0 0 111122222 2677777766431 1246889999
Q ss_pred CCCceE-EcCCCCCC---------CCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 323 ETETWT-EIPNMSPA---------RGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 323 ~~~~W~-~i~~~p~~---------r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
.+.+-. .+...+.+ .... ...++.. ++.+++.++.++.|.+||..+.+-
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 266 EFGERIGSLSVPTHSSQASLGEFAHSSW------------VMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp TTCCEEEEECBC--------CCBSBSSC------------EEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCcccceeccCcccccccccccccCCc------------EEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 876532 22210000 0111 0022222 577778888889999999987643
No 128
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.93 E-value=1.9 Score=44.58 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEc-CCCc--eeeCCCCCCC--------CceeeEEEeCCEEEEEeccCCCCCccC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSI-LTNS--WSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILS 266 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~-~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~ 266 (458)
++.++.||+.... ...++.+|. .|++ |+.-...... ....+.++.+++||+... -.
T Consensus 59 ~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg 125 (571)
T 2ad6_A 59 LVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NG 125 (571)
T ss_dssp EEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TS
T ss_pred EEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CC
Confidence 6679999998641 357999999 7764 8764433211 111244567889988733 25
Q ss_pred eEEEEeCCCCc--EEEcC-CCCCC-CcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEc
Q 012701 267 SAEMYNSETQT--WKVLP-SMKNP-RKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEI 330 (458)
Q Consensus 267 ~v~~yd~~t~~--W~~~~-~~p~~-r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i 330 (458)
.+..+|..+++ |+.-. ..+.. ....+.++.++++|+-.+.. +......++.||+++.+ |+.-
T Consensus 126 ~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGA--ELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCG--GGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCC--ccCCCCEEEEEECCCCcEEEEEc
Confidence 68999999885 87532 21111 11223356799998764321 01123468999998765 8653
No 129
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.47 Score=44.89 Aligned_cols=156 Identities=10% Similarity=0.137 Sum_probs=78.9
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCC--CcEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSET--QTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
++..++.|+.+ ..+.+||... ..++.+..+.........+.. ++.+++.|+.+ ..+..||..+
T Consensus 118 ~g~~las~s~D------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-------~~i~iW~~~~ 184 (330)
T 2hes_X 118 DGYYLATCSRD------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-------DTVRIWKDYD 184 (330)
T ss_dssp TSCEEEEEETT------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-------SCEEEEEEET
T ss_pred CCCEEEEEeCC------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-------CeEEEEECCC
Confidence 55666777765 3578888843 234433322222222222222 56777777765 3467788777
Q ss_pred CceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-C--CEEEEEEcCCCeEEEEeCCCC------ceEEeccCCCccCC
Q 012701 325 ETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-N--NELYAADYADMEVRKYDKERR------LWFTIGRLPERANS 395 (458)
Q Consensus 325 ~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~--~~lyv~gg~~~~v~~yd~~~~------~W~~v~~lp~~~~~ 395 (458)
..|..+..+....... ..++.. + +..++.|+.++.|.+||..+. .|..+..++....
T Consensus 185 ~~~~~~~~~~~h~~~v-------------~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~- 250 (330)
T 2hes_X 185 DDWECVAVLNGHEGTV-------------WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK- 250 (330)
T ss_dssp TEEEEEEEECCCSSCE-------------EEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS-
T ss_pred CCeeEEEEccCCCCcE-------------EEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc-
Confidence 7666544322111110 012222 2 345666777888988887543 4666555543111
Q ss_pred CCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 396 MNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 396 ~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
..-.+++...+.+++.||.+. .+.+|+... ..|+.+
T Consensus 251 --~~v~~v~~s~~~~l~s~~~dg------~v~iw~~~~--~~~~~~ 286 (330)
T 2hes_X 251 --RQVYNVAWGFNGLIASVGADG------VLAVYEEVD--GEWKVF 286 (330)
T ss_dssp --SCEEEEEECTTSCEEEEETTS------CEEEEEEET--TEEEEE
T ss_pred --cceEEEEEcCCCEEEEEeCCC------EEEEEEcCC--CceEEE
Confidence 011223333445666666432 356676543 445444
No 130
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.92 E-value=0.22 Score=48.99 Aligned_cols=139 Identities=12% Similarity=0.074 Sum_probs=77.8
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 293 (458)
..+.|++||..|++-..+-.+........++.+ ++..++.|+.+ ..+.+||..+++-... +.........
T Consensus 123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~~--~~~h~~~v~~ 194 (420)
T 4gga_A 123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRN--MTSHSARVGS 194 (420)
T ss_dssp ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEE
T ss_pred eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEEE--EeCCCCceEE
Confidence 345799999999877655444333222333333 55677777765 4588999988753222 2222223344
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeE
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEV 373 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v 373 (458)
+..++.+.+.|+.+ ..+..+|.......... +....... ......-++..++.++.++.+
T Consensus 195 ~s~~~~~l~sgs~d-------~~i~~~d~~~~~~~~~~-~~~h~~~~------------~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 195 LSWNSYILSSGSRS-------GHIHHHDVRVAEHHVAT-LSGHSQEV------------CGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp EEEETTEEEEEETT-------SEEEEEETTSSSCEEEE-EECCSSCE------------EEEEECTTSSEEEEEETTSCE
T ss_pred EeeCCCEEEEEeCC-------CceeEeeecccceeeEE-ecccccce------------eeeeecCCCCeeeeeeccccc
Confidence 55677777777755 35677777654432111 10000000 001111256677777888899
Q ss_pred EEEeCCCCc
Q 012701 374 RKYDKERRL 382 (458)
Q Consensus 374 ~~yd~~~~~ 382 (458)
.+||..+..
T Consensus 255 ~i~~~~~~~ 263 (420)
T 4gga_A 255 NVWPSAPGE 263 (420)
T ss_dssp EEEESSCCS
T ss_pred eEEeecccc
Confidence 999987653
No 131
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.90 E-value=0.15 Score=47.54 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=89.2
Q ss_pred ceEEEEecCCCcEEeC-CCCCCCccccccCceEEEe--CCEEEEEcCCC---------CCcCccceEEEEEcCCCceeeC
Q 012701 166 LEWEAFDPIRRRWMHL-PRMTSNECFMCSDKESLAV--GTELLVFGREL---------TAHHISHVIYRYSILTNSWSSG 233 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l-~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~---------~~~~~~~~v~~yd~~t~~W~~~ 233 (458)
..+..||+. ++...+ ........... ...+++ ++.||+..... ........+++||+. ++...+
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~--~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQG--CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBC--CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccC--CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 467788988 776655 32221111110 112333 56788775321 011123578999986 555443
Q ss_pred C-CCCCCCceeeEEEe-----CC-EEEEEeccCCCCCccCeEEEEeCC-CCcEEE---cCCCCCCC-cceeEEEE--CCE
Q 012701 234 M-RMNAPRCLFGSASL-----GE-IAILAGGSDLEGNILSSAEMYNSE-TQTWKV---LPSMKNPR-KMCSGVFM--DGK 299 (458)
Q Consensus 234 ~-~~p~~r~~~~~~~~-----~~-~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~---~~~~p~~r-~~~~~~~~--~g~ 299 (458)
. .+..+ .+.+.. ++ .||+.... ...+.+||+. +++... ...++... .....+.. +|+
T Consensus 168 ~~~~~~~---~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 168 DTAFQFP---NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp EEEESSE---EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ccCCCCc---ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 1 11111 223333 23 57777432 2568888876 443321 11222211 11222333 688
Q ss_pred EEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEEcCCCeEEEE
Q 012701 300 FYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAADYADMEVRKY 376 (458)
Q Consensus 300 lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~gg~~~~v~~y 376 (458)
||+..... ..+.+||+.+.+. ..+. .+.. .. ..++.. +++ ||+.+...+.|++|
T Consensus 239 l~v~~~~~-------~~i~~~d~~~g~~~~~~~-~~~~--~~-------------~~i~~~~dg~~l~v~~~~~~~l~~~ 295 (314)
T 1pjx_A 239 LLVANWGS-------SHIEVFGPDGGQPKMRIR-CPFE--KP-------------SNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEEEETT-------TEEEEECTTCBSCSEEEE-CSSS--CE-------------EEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEEcCC-------CEEEEEcCCCCcEeEEEe-CCCC--Cc-------------eeEEECCCCCEEEEEeCCCCeEEEE
Confidence 88874322 3688899985442 2221 1211 11 023332 444 88887767899999
Q ss_pred eCCCC
Q 012701 377 DKERR 381 (458)
Q Consensus 377 d~~~~ 381 (458)
++...
T Consensus 296 ~~~~~ 300 (314)
T 1pjx_A 296 EWQRN 300 (314)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 98764
No 132
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=95.89 E-value=2 Score=44.46 Aligned_cols=115 Identities=10% Similarity=0.163 Sum_probs=64.4
Q ss_pred EEEEec-cceEEEEec-CCC--cEEeCCCCCCCc----cccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc-
Q 012701 159 VYFSCH-LLEWEAFDP-IRR--RWMHLPRMTSNE----CFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS- 229 (458)
Q Consensus 159 l~~~~~-~~~~~~yDp-~~~--~W~~l~~~p~~~----~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 229 (458)
+|+... ...++++|+ .++ .|..-....... +........+..++.||+.. ....++.+|..|++
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-------ANGHLLALDAKTGKI 137 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCCE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEe-------CCCEEEEEECCCCCE
Confidence 455444 456889998 776 587644332211 10001123455688888875 23569999999874
Q ss_pred -eeeC-CCCCCC-CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEc
Q 012701 230 -WSSG-MRMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVL 281 (458)
Q Consensus 230 -W~~~-~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 281 (458)
|+.- ...+.. ....+-++.++.||+..+.... .....+..||+.|++ |+.-
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL-GVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCCCccceeccCCEEECCEEEEEecCCcc-CCCCEEEEEECCCCcEEEEEc
Confidence 8653 221111 1112334568888876442111 113579999999875 8653
No 133
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.85 E-value=1.1 Score=41.28 Aligned_cols=183 Identities=9% Similarity=-0.079 Sum_probs=95.4
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC---
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP--- 239 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~--- 239 (458)
...+..||+.++ ...+...... ...+++ ++.||+... ....+++||+.+++.+.+......
T Consensus 49 ~~~i~~~~~~~~-~~~~~~~~~~-------~~~l~~~~dg~l~v~~~------~~~~i~~~d~~~g~~~~~~~~~~~~~~ 114 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-LSPEMHPSHH-------QNGHCLNKQGHLIACSH------GLRRLERQREPGGEWESIADSFEGKKL 114 (296)
T ss_dssp GTEEEEEETTSC-EEEEESSCSS-------EEEEEECTTCCEEEEET------TTTEEEEECSTTCCEEEEECEETTEEC
T ss_pred CCEEEEEECCCC-eEEEECCCCC-------cceeeECCCCcEEEEec------CCCeEEEEcCCCCcEEEEeeccCCCCC
Confidence 456788999887 5444321111 112333 567877652 235699999988887665322111
Q ss_pred -CceeeEEEeCCEEEEE----eccCC-------CCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEcc
Q 012701 240 -RCLFGSASLGEIAILA----GGSDL-------EGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGG 305 (458)
Q Consensus 240 -r~~~~~~~~~~~lyv~----GG~~~-------~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG 305 (458)
+....++.-++.||+. |.... .......++.||+. ++.+.+..- .....++.+ ++++++...
T Consensus 115 ~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~gi~~s~dg~~lv~~~ 190 (296)
T 3e5z_A 115 NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKPNGLAFLPSGNLLVSDT 190 (296)
T ss_dssp CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSEEEEEECTTSCEEEEET
T ss_pred CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCCccEEECCCCCEEEEeC
Confidence 1111222236788887 43210 01113578999988 655544221 111222332 677664432
Q ss_pred ccCCCCcccceEEEEECC-CCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 306 IGGSDSKVLTCGEEYDLE-TETW-TEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 306 ~~~~~~~~~~~v~~yd~~-~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
. ...+++||+. +.+. .....+ ....+ .+..+++ -+|.||+.. .+.|.+||+..+.
T Consensus 191 ~-------~~~i~~~~~~~~g~~~~~~~~~-~~~~~------------~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~ 248 (296)
T 3e5z_A 191 G-------DNATHRYCLNARGETEYQGVHF-TVEPG------------KTDGLRVDAGGLIWASA--GDGVHVLTPDGDE 248 (296)
T ss_dssp T-------TTEEEEEEECSSSCEEEEEEEE-CCSSS------------CCCSEEEBTTSCEEEEE--TTEEEEECTTSCE
T ss_pred C-------CCeEEEEEECCCCcCcCCCeEe-eCCCC------------CCCeEEECCCCCEEEEc--CCeEEEECCCCCE
Confidence 2 2468889886 4554 211111 00000 1113444 378899887 6789999998665
Q ss_pred eEEec
Q 012701 383 WFTIG 387 (458)
Q Consensus 383 W~~v~ 387 (458)
...+.
T Consensus 249 ~~~~~ 253 (296)
T 3e5z_A 249 LGRVL 253 (296)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55553
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=95.84 E-value=0.0027 Score=60.98 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=38.4
Q ss_pred CCCCCCCChhHHHHhhcccCcccchhhhhccHhHHHHhccCcE
Q 012701 103 DSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGEL 145 (458)
Q Consensus 103 ~~l~~~LP~dl~~~iL~rlp~~~~~~l~~Vck~wr~lv~s~~~ 145 (458)
...|..||+|++..|+.+|+..++.+++.|||+|+.++.++.+
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~ 48 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence 4568899999999999999999999999999999999976653
No 135
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.77 E-value=1.4 Score=41.72 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=80.5
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
++.+++.|+.+ ..+.+||..+++-.............++++ -++++++.|+.+ ..|.+||+.+.+-
T Consensus 138 ~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-------g~i~iwd~~~~~~ 204 (343)
T 3lrv_A 138 NTEYFIWADNR------GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-------GILDVYNLSSPDQ 204 (343)
T ss_dssp -CCEEEEEETT------CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-------SCEEEEESSCTTS
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-------CEEEEEECCCCCC
Confidence 45667777765 358899998887543322222212223333 377888888765 3588899987653
Q ss_pred E--EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCce-EEeccCCCccCCCCcccEEE
Q 012701 328 T--EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLW-FTIGRLPERANSMNGWGLAF 403 (458)
Q Consensus 328 ~--~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W-~~v~~lp~~~~~~~~~~~a~ 403 (458)
. .+. ....+. -..++.. ++..++.++ .+.|.+||+.+..= ..+..+........ ..++
T Consensus 205 ~~~~~~---~~h~~~------------v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~ 266 (343)
T 3lrv_A 205 ASSRFP---VDEEAK------------IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG--TVTY 266 (343)
T ss_dssp CCEECC---CCTTSC------------EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C--CEEE
T ss_pred CccEEe---ccCCCC------------EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc--ceEE
Confidence 2 221 101111 0022222 556666666 45999999987542 11222111111100 0112
Q ss_pred E-EeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 404 R-ACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 404 ~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
+ ..+++.++.|+.. ...+.+|+++.....|+.
T Consensus 267 ~~~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp EECTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE
T ss_pred EECCCCCEEEEecCC-----CCcEEEEEEcccccceEe
Confidence 2 2345666664321 125788888777788987
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=95.75 E-value=0.21 Score=45.28 Aligned_cols=190 Identities=9% Similarity=-0.037 Sum_probs=97.1
Q ss_pred cceEEEEecCC-CcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 165 LLEWEAFDPIR-RRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 165 ~~~~~~yDp~~-~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
...++.+|..+ .+...+.......... .....-++..+++++.... ....+|.++..++.-..+..... ..
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~ 132 (297)
T 2ojh_A 61 EGLLYRLSLAGDPSPEKVDTGFATICNN---DHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SY 132 (297)
T ss_dssp TTEEEEEESSSCCSCEECCCTTCCCBCS---CCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EE
T ss_pred CCeEEEEeCCCCCCceEecccccccccc---ceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---cc
Confidence 34678889888 7766655333211111 1112234554555432111 34578999988877655543321 22
Q ss_pred eEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEcc-ccCCCCcccceEEE
Q 012701 244 GSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGG-IGGSDSKVLTCGEE 319 (458)
Q Consensus 244 ~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG-~~~~~~~~~~~v~~ 319 (458)
..+.. +..|++.++.++ ...++.+|..++....+...+.. ....+. -+++.+++++ .. ....++.
T Consensus 133 ~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~-----~~~~i~~ 201 (297)
T 2ojh_A 133 WHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEGR--NDGPDYSPDGRWIYFNSSRT-----GQMQIWR 201 (297)
T ss_dssp EEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSSC--EEEEEECTTSSEEEEEECTT-----SSCEEEE
T ss_pred ceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCCc--cccceECCCCCEEEEEecCC-----CCccEEE
Confidence 22222 345665655442 24677778888877666543221 112222 2565444433 22 1346788
Q ss_pred EECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE-EEEEEcC----------CCeEEEEeCCCCceEEec
Q 012701 320 YDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE-LYAADYA----------DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 320 yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~gg~----------~~~v~~yd~~~~~W~~v~ 387 (458)
+++.......+...... .. .++.. +++ |++.+.. ...+++||..+++...+.
T Consensus 202 ~~~~~~~~~~~~~~~~~--~~--------------~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 202 VRVDGSSVERITDSAYG--DW--------------FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp EETTSSCEEECCCCSEE--EE--------------EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred ECCCCCCcEEEecCCcc--cC--------------CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence 88877777666532110 00 12221 444 4444321 156999999988876665
Q ss_pred cC
Q 012701 388 RL 389 (458)
Q Consensus 388 ~l 389 (458)
.+
T Consensus 266 ~~ 267 (297)
T 2ojh_A 266 DL 267 (297)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 137
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.68 E-value=0.51 Score=46.27 Aligned_cols=198 Identities=12% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.+++.|+. ...+.+||..+..-.. .+........++.+ ++..++.|+.+ ..+.+||..++.-
T Consensus 161 ~~~~l~sgs~------D~~i~iwd~~~~~~~~--~~~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 161 SGKLLASCSA------DMTIKLWDFQGFECIR--TMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYC 226 (410)
T ss_dssp TSSEEEEEET------TSCCCEEETTSSCEEE--CCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCE
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCceeE--EEcCCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcE
Confidence 4566666654 3457788887654322 22211111222222 45566777755 4688899988753
Q ss_pred EEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCceEE-cCCCCCCCCCC--CCCCC---CCCCc
Q 012701 279 KVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGA--ARGTE---MPASA 350 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~--~~~~~---~~~~~ 350 (458)
... +.........+. -++++++.|+.+ ..+.+||+.+..... +.......... .+... .....
T Consensus 227 ~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D-------~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 227 VKT--FTGHREWVRMVRPNQDGTLIASCSND-------QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp EEE--EECCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred EEE--EeCCCccEEEEEECCCCCEEEEEcCC-------CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc
Confidence 221 111111112222 267777777765 357788887765432 11100000000 00000 00000
Q ss_pred CCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcCCCCCCCCeeeEEEe
Q 012701 351 EAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 351 ~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~~~~~~~~~~~~~~ 429 (458)
+.........+.+++.|+.++.|.+||..+.. .+..+.... .+-.++.. .+++.++.||.+. .+.+|
T Consensus 298 ~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~----~~v~~v~~~~~g~~l~s~s~D~------~i~vw 365 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGHD----NWVRGVLFHSGGKFILSCADDK------TLRVW 365 (410)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEECCS----SCEEEEEECSSSSCEEEEETTT------EEEEE
T ss_pred cccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEECCC----CcEEEEEEcCCCCEEEEEeCCC------eEEEE
Confidence 00001111236677888888999999998764 222221111 11122222 3456666666432 56777
Q ss_pred ecCC
Q 012701 430 VPSE 433 (458)
Q Consensus 430 ~~~~ 433 (458)
+...
T Consensus 366 d~~~ 369 (410)
T 1vyh_C 366 DYKN 369 (410)
T ss_dssp CCTT
T ss_pred ECCC
Confidence 7643
No 138
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=95.66 E-value=0.18 Score=47.50 Aligned_cols=165 Identities=12% Similarity=0.075 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC-CCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA-PRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.+++.|+ ....+.+||..++....+..+.. ...-.+++.. ++.+++.|+.+ ..+.+||..++
T Consensus 24 ~g~~lasgs------~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~~~~ 91 (316)
T 3bg1_A 24 YGTRLATCS------SDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------RKVIIWREENG 91 (316)
T ss_dssp GGCEEEEEE------TTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT------SCEEEECCSSS
T ss_pred CCCEEEEEe------CCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC------CEEEEEECCCC
Confidence 344555554 34568888887765433222211 1111222222 25667777765 45888999888
Q ss_pred cEEEcCCCCCCCcc-eeEEEE-C--CEEEEEccccCCCCcccceEEEEECCCC-ceEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 277 TWKVLPSMKNPRKM-CSGVFM-D--GKFYVIGGIGGSDSKVLTCGEEYDLETE-TWTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 277 ~W~~~~~~p~~r~~-~~~~~~-~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
.|..+..+...... .++++. + +.+++.|+.+ ..+..||..+. .|.....+....... .....
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-------~~i~lwd~~~~~~~~~~~~~~~h~~~v------~~~~~ 158 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-------GAISLLTYTGEGQWEVKKINNAHTIGC------NAVSW 158 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-------SCEEEEEECSSSCEEECCBTTSSSSCB------CCCEE
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-------CCEEEEecCCCCCcceeeeeccccCCc------ceEEE
Confidence 77544332222221 222232 3 5677777655 34677887765 475433221110000 00000
Q ss_pred CCC----EEE-------EECCEEEEEEcCCCeEEEEeCCC-CceEEeccCC
Q 012701 352 APP----LVA-------VVNNELYAADYADMEVRKYDKER-RLWFTIGRLP 390 (458)
Q Consensus 352 ~~~----~~~-------~~~~~lyv~gg~~~~v~~yd~~~-~~W~~v~~lp 390 (458)
.+. ... ...+++++.|+.++.|.+||..+ +.|..+..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~ 209 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence 000 000 00135677788888999999874 4687766554
No 139
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=95.64 E-value=1.5 Score=41.32 Aligned_cols=194 Identities=13% Similarity=0.049 Sum_probs=97.5
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC--cEEEcCCC------CCCC
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ--TWKVLPSM------KNPR 288 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~------p~~r 288 (458)
+.++++|+.+++.........-..-.+.++. ++.||+.... ...+.+||+... .-..+... ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~------~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 142 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA------LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHF 142 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT------TTEEEEECTTCSSCCSEEESBTTBCCCSTTCC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC------CCEEEEEeCCCCeEEEEEecccCCCCCCcccc
Confidence 4699999988775432111111111233333 5679988653 257899998765 22222211 1111
Q ss_pred cceeEE-EE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-C-CEE
Q 012701 289 KMCSGV-FM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-N-NEL 363 (458)
Q Consensus 289 ~~~~~~-~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~l 363 (458)
.....+ +. ++.|||..++. ...|.+||+....-..+....... . ..+.....|..+++- + +.|
T Consensus 143 ~~P~~ia~~~~~g~lyv~d~~~------~~~I~~~~~~g~~~~~~~~~g~~~-~-----~~~~~~~~p~gia~d~~~g~l 210 (329)
T 3fvz_A 143 CQPTDVAVEPSTGAVFVSDGYC------NSRIVQFSPSGKFVTQWGEESSGS-S-----PRPGQFSVPHSLALVPHLDQL 210 (329)
T ss_dssp SSEEEEEECTTTCCEEEEECSS------CCEEEEECTTSCEEEEECEECCSS-S-----CCTTEESCEEEEEEETTTTEE
T ss_pred CCCcEEEEeCCCCeEEEEeCCC------CCeEEEEcCCCCEEEEeccCCCCC-C-----CCCcccCCCcEEEEECCCCEE
Confidence 123333 33 68999986532 246889996554433332111000 0 000001112245554 4 899
Q ss_pred EEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC-CCeeeEEEeecCC
Q 012701 364 YAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG-EGFIELNSWVPSE 433 (458)
Q Consensus 364 yv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~ 433 (458)
|+.+...+.|.+||+.+++....-..+.... . ..+++...+.+|+..|..... .....+.+|++..
T Consensus 211 ~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~--~--~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~ 277 (329)
T 3fvz_A 211 CVADRENGRIQCFKTDTKEFVREIKHASFGR--N--VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS 277 (329)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECCTTTTT--C--EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeccccCC--C--cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence 9999888999999998666544322221111 0 122333346777776643211 1223455666543
No 140
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=95.62 E-value=1.5 Score=41.09 Aligned_cols=104 Identities=12% Similarity=0.079 Sum_probs=56.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
+.+++.|+. ...+.+||..+++-... +. ....-.+++.. ++.+++.|+.+ ..+.+||..+++-
T Consensus 85 ~~~l~~~~~------dg~i~v~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~ 150 (366)
T 3k26_A 85 HPLLAVAGS------RGIIRIINPITMQCIKH--YVGHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTDTL 150 (366)
T ss_dssp CEEEEEEET------TCEEEEECTTTCCEEEE--EESCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTTEE
T ss_pred CCEEEEecC------CCEEEEEEchhceEeee--ecCCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecCeE
Confidence 567777653 34688999887653221 11 11111222222 45677777765 4588999988764
Q ss_pred EEc-CCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 279 KVL-PSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 279 ~~~-~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
... ..+.........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 194 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------HSLKLWRINSKR 194 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEESCSHH
T ss_pred EEEecccccccCceeEEEECCCCCEEEEecCC-------CCEEEEECCCCc
Confidence 332 211222222222222 56677777754 357889987653
No 141
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.60 E-value=0.52 Score=44.43 Aligned_cols=232 Identities=11% Similarity=0.000 Sum_probs=116.2
Q ss_pred EEEEeccceEEEEecCCCcEEeCCCCCCC------------c--cccccCceEEEe--CCEEEEEcCCCCCcCccceEEE
Q 012701 159 VYFSCHLLEWEAFDPIRRRWMHLPRMTSN------------E--CFMCSDKESLAV--GTELLVFGRELTAHHISHVIYR 222 (458)
Q Consensus 159 l~~~~~~~~~~~yDp~~~~W~~l~~~p~~------------~--~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~ 222 (458)
+|+......+..||+.++++..+...... . ........++.. ++.|||... .+.+++
T Consensus 33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~-------~~~i~~ 105 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC-------YYHLSV 105 (322)
T ss_dssp EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET-------TTEEEE
T ss_pred EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC-------CCCEEE
Confidence 44444455788899888766543211000 0 000001223333 578998842 134888
Q ss_pred EEcCCCceeeCCCCCCC---CceeeEEEe--CCEEEEEeccCCC-----------CCccCeEEEEeCCCCcEEEcCC-CC
Q 012701 223 YSILTNSWSSGMRMNAP---RCLFGSASL--GEIAILAGGSDLE-----------GNILSSAEMYNSETQTWKVLPS-MK 285 (458)
Q Consensus 223 yd~~t~~W~~~~~~p~~---r~~~~~~~~--~~~lyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~-~p 285 (458)
||+.++..+.+...... ..-...++. ++.||+.-..... ......+++||+.+++.+.+.. +.
T Consensus 106 ~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~ 185 (322)
T 2fp8_A 106 VGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH 185 (322)
T ss_dssp ECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES
T ss_pred EeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc
Confidence 99887765554321111 111233333 4688887432100 0113568999998887654421 11
Q ss_pred CCCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECCCC---ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-
Q 012701 286 NPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETE---TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV- 359 (458)
Q Consensus 286 ~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~---~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~- 359 (458)
.+ ...++. ++ .|||.-.. ...|.+||+... ..+.+..++. . ..+++-
T Consensus 186 ~p---~gia~~~dg~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~~~~~g----P-------------~gi~~d~ 238 (322)
T 2fp8_A 186 VP---GGAEVSADSSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVLVKIPN----P-------------GNIKRNA 238 (322)
T ss_dssp CC---CEEEECTTSSEEEEEEGG-------GTEEEEEESSSTTTTCEEEEEECSS----E-------------EEEEECT
T ss_pred cC---cceEECCCCCEEEEEeCC-------CCeEEEEECCCCcCCccceEEeCCC----C-------------CCeEECC
Confidence 11 122332 44 48887322 257899998753 3333222211 1 133333
Q ss_pred CCEEEEEEcC----------CCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEe
Q 012701 360 NNELYAADYA----------DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 360 ~~~lyv~gg~----------~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~ 429 (458)
+|.||+.... ...|.+||+..+.-..+. .|.... .. +..+++..+++|||.+... ..+..+
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~-~~-~~~~~~~~~g~L~v~~~~~------~~i~~~ 309 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFA-GE-HFEQIQEHDGLLYIGTLFH------GSVGIL 309 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTT-TS-CCCEEEEETTEEEEECSSC------SEEEEE
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCc-cc-cceEEEEeCCEEEEeecCC------CceEEE
Confidence 5689998643 467999999765544443 222110 00 1233445688999886422 245566
Q ss_pred ecCC
Q 012701 430 VPSE 433 (458)
Q Consensus 430 ~~~~ 433 (458)
++..
T Consensus 310 ~~~~ 313 (322)
T 2fp8_A 310 VYDK 313 (322)
T ss_dssp EC--
T ss_pred eccc
Confidence 6544
No 142
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=95.60 E-value=0.38 Score=45.69 Aligned_cols=181 Identities=10% Similarity=0.013 Sum_probs=92.3
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC--CCce
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA--PRCL 242 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~ 242 (458)
...++.||+.+++...+. .+... ......-++.+|+... ..+++||+.+++.+.+...+. +...
T Consensus 70 ~~~i~~~d~~~~~~~~~~-~~~~v-----~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 70 ERELHELHLASGRKTVHA-LPFMG-----SALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNR 135 (326)
T ss_dssp GTEEEEEETTTTEEEEEE-CSSCE-----EEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CCEEEEEECCCCcEEEEE-CCCcc-----eEEEEeCCCeEEEEEC--------CCEEEEECCCCcEEEEeeCCCCCCCCC
Confidence 456888999887654432 12111 0111234778877641 349999999998876644321 1111
Q ss_pred eeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCcccceEE
Q 012701 243 FGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGE 318 (458)
Q Consensus 243 ~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~ 318 (458)
.....+ ++++|+.............+++|| +++.+.+..- . ......+.. ++ .||+.... ...++
T Consensus 136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-~-~~~~~i~~s~dg~~lyv~~~~-------~~~I~ 204 (326)
T 2ghs_A 136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-I-SIPNSICFSPDGTTGYFVDTK-------VNRLM 204 (326)
T ss_dssp EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE-E-SSEEEEEECTTSCEEEEEETT-------TCEEE
T ss_pred CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC-C-cccCCeEEcCCCCEEEEEECC-------CCEEE
Confidence 222222 567776432111112245788888 5665544210 0 011122222 45 57776322 24688
Q ss_pred EEECC--CC-c------eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 319 EYDLE--TE-T------WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 319 ~yd~~--~~-~------W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
+||.. +. . +..+.. .. +.+..+++- +|.||+.....+.|.+||+..+.-..+
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~---~~-------------~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i 266 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTG---IK-------------GGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARY 266 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTT---SS-------------SEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEE
T ss_pred EEEcccccCCcccCceEEEECCC---CC-------------CCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEE
Confidence 89875 43 2 222110 00 011123332 678998876567899999965443444
No 143
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.6 Score=45.06 Aligned_cols=148 Identities=9% Similarity=0.065 Sum_probs=78.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC----CceeeEEEe--C-CEEEEEeccCCCCCccCeEEEEeCC
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP----RCLFGSASL--G-EIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
+.+++.|+. ...+.+||..+++-...-..+.. .....++.+ + ..+++.|+.++. ...+.+||..
T Consensus 178 ~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~ 248 (416)
T 2pm9_A 178 AHVFASAGS------SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLR 248 (416)
T ss_dssp TTEEEEESS------SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETT
T ss_pred CcEEEEEcC------CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCC
Confidence 456666653 35689999988765433222211 122222222 2 356777765532 1367888988
Q ss_pred CCcEEEcCCCC-CCCcce-eEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEE-cCCCCCCCCCCCCCCCCCCC
Q 012701 275 TQTWKVLPSMK-NPRKMC-SGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE-IPNMSPARGGAARGTEMPAS 349 (458)
Q Consensus 275 t~~W~~~~~~p-~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~~~~~~~~~~ 349 (458)
+..- .+..+. ...... +.+.. ++++++.|+.+ ..+.+||+.+.+-.. +.... ... .
T Consensus 249 ~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-------g~v~~wd~~~~~~~~~~~~~~-~~v-~--------- 309 (416)
T 2pm9_A 249 NANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-------NTVLLWNPESAEQLSQFPARG-NWC-F--------- 309 (416)
T ss_dssp STTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-------SEEEEECSSSCCEEEEEECSS-SCC-C---------
T ss_pred CCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-------CCEEEeeCCCCccceeecCCC-Cce-E---------
Confidence 7531 111122 111222 22232 67788887765 358889988765322 11111 000 1
Q ss_pred cCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCc
Q 012701 350 AEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 350 ~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.++.. ++ .+++.++.++.|.+||+.+..
T Consensus 310 -----~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 310 -----KTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp -----CEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred -----EEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 23333 44 688888888899999987653
No 144
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=95.59 E-value=0.2 Score=48.09 Aligned_cols=138 Identities=9% Similarity=-0.018 Sum_probs=70.6
Q ss_pred cceEEEEEcCCCceeeCCCC---CCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcc-e
Q 012701 217 SHVIYRYSILTNSWSSGMRM---NAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKM-C 291 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~ 291 (458)
...|.+||..+++-...... .+...-.+++.. ++..++.|+.+ ..+.+||..+++-.. .+...... .
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~--~~~~h~~~V~ 173 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLS--SYRAHAAQVT 173 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--EECCCSSCEE
T ss_pred CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEE--EEcCcCCceE
Confidence 45688999987753221110 011111122222 56677777765 358889998875322 12111111 1
Q ss_pred eEEE-ECC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEE
Q 012701 292 SGVF-MDG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAAD 367 (458)
Q Consensus 292 ~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~g 367 (458)
+.++ .++ .+++.|+.+ ..+.+||+.+.+-...-......... .+++.. ++++++.|
T Consensus 174 ~~~~~~~~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSED-------NRILLWDTRCPKPASQIGCSAPGYLP-------------TSLAWHPQQSEVFVFG 233 (344)
T ss_dssp EEEECSSCTTEEEEEETT-------SCEEEEETTSSSCEEECC----CCCE-------------EEEEECSSCTTEEEEE
T ss_pred EEEecCCCCCceeeeccc-------cccccccccccceeeeeecceeeccc-------------eeeeecCCCCcceEEe
Confidence 2222 233 477777765 35788999876543221111111100 022222 45788888
Q ss_pred cCCCeEEEEeCCCCc
Q 012701 368 YADMEVRKYDKERRL 382 (458)
Q Consensus 368 g~~~~v~~yd~~~~~ 382 (458)
+.++.|.+||..+.+
T Consensus 234 ~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 234 DENGTVSLVDTKSTS 248 (344)
T ss_dssp ETTSEEEEEESCC--
T ss_pred ccCCcEEEEECCCCc
Confidence 888999999997654
No 145
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=95.54 E-value=0.58 Score=44.91 Aligned_cols=147 Identities=10% Similarity=-0.015 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCc------eeeCCCCCCC---CceeeEEEe-----CCEE-EEEeccCCCCCccCe
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNS------WSSGMRMNAP---RCLFGSASL-----GEIA-ILAGGSDLEGNILSS 267 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~------W~~~~~~p~~---r~~~~~~~~-----~~~l-yv~GG~~~~~~~~~~ 267 (458)
.+++.|+. ...+.+||..++. +..+...+.. ..-.+++.. ++.. ++.|+.+ ..
T Consensus 82 ~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g~ 149 (397)
T 1sq9_A 82 CLVATTSF------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------GT 149 (397)
T ss_dssp EEEEEEET------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT------SC
T ss_pred cEEEEEcC------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC------Cc
Confidence 66666653 3568899988876 6665544311 112223333 3455 7777755 35
Q ss_pred EEEEeCCC------Cc---EEEcCCC--------CCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 268 AEMYNSET------QT---WKVLPSM--------KNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 268 v~~yd~~t------~~---W~~~~~~--------p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
+.+||..+ .. |.....+ .......++++. ++ +++.|+.+ ..+.+||+.+.+-..
T Consensus 150 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-------g~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 150 TYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-------GTVQISELSTLRPLY 221 (397)
T ss_dssp EEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-------SEEEEEETTTTEEEE
T ss_pred EEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-------CcEEEEECCCCceeE
Confidence 77777766 22 1110011 011112223333 56 66666544 368889998765332
Q ss_pred cCCCCCCC---CCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCC---CeEEEEeCCCCc
Q 012701 330 IPNMSPAR---GGAARGTEMPASAEAPPLVAVV--NNELYAADYAD---MEVRKYDKERRL 382 (458)
Q Consensus 330 i~~~p~~r---~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~---~~v~~yd~~~~~ 382 (458)
.-...... ... ...+.+ ++.+++.++.. +.|.+||..+.+
T Consensus 222 ~~~~~~~h~~~~~~-------------i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~ 269 (397)
T 1sq9_A 222 NFESQHSMINNSNS-------------IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269 (397)
T ss_dssp EEECCC---CCCCC-------------EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEeccccccccCCc-------------cceEEECCCCCEEEEEecCCCCceEEEEECCCCc
Confidence 11110000 111 022222 56777777777 799999988764
No 146
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.53 E-value=0.55 Score=46.26 Aligned_cols=182 Identities=9% Similarity=-0.048 Sum_probs=98.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CC-EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GT-ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
..++.+|..+++...+...+... ..++. ++ .|++.+... ....+++||+.+++...+..... .
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~~~~-------~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~l~~~~~---~ 268 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFPRHN-------GAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRS---N 268 (415)
T ss_dssp CEEEEEETTTCCEEEEECCSSCE-------EEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEECCCCSS---C
T ss_pred cEEEEEECCCCcEEEeecCCCcc-------cCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEeCcCCCC---c
Confidence 37888888887766554332211 11222 44 455444321 23469999999988776644321 1
Q ss_pred eeEEEe--CCE-EEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEE
Q 012701 243 FGSASL--GEI-AILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGE 318 (458)
Q Consensus 243 ~~~~~~--~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~ 318 (458)
.....+ +++ |++.+..++ ...++.+|..++.-..+... .......+. -+|+.+++++... ....++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~~--~~~~~~~~~spdG~~l~~~~~~~----g~~~i~ 338 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITWE--GSQNQDADVSSDGKFMVMVSSNG----GQQHIA 338 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCCS--SSEEEEEEECTTSSEEEEEEECS----SCEEEE
T ss_pred ccceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEecC--CCcccCeEECCCCCEEEEEECcC----CceEEE
Confidence 222222 444 444432222 25789999998875554321 111112222 3666555554431 134689
Q ss_pred EEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCC---eEEEEeCCCCceEEecc
Q 012701 319 EYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADM---EVRKYDKERRLWFTIGR 388 (458)
Q Consensus 319 ~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~---~v~~yd~~~~~W~~v~~ 388 (458)
.+|+.+.+...+.... ... .++.. +++.++++...+ .|+.+|...+..+.+..
T Consensus 339 ~~d~~~~~~~~l~~~~---~~~--------------~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 339 KQDLATGGVQVLSSTF---LDE--------------TPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEETTTCCEEECCCSS---SCE--------------EEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred EEECCCCCEEEecCCC---CcC--------------CeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence 9999998887665321 111 22322 565555544333 79999998877766643
No 147
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=95.53 E-value=0.72 Score=47.74 Aligned_cols=239 Identities=11% Similarity=-0.026 Sum_probs=114.5
Q ss_pred EEEEEe-ccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC
Q 012701 158 WVYFSC-HLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGM 234 (458)
Q Consensus 158 ~l~~~~-~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 234 (458)
.+|+.. ....+..+|+.+++-...-+..... +.++.. +..+|+.+ ..+.+.+||+.+.+-+.+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p------~~v~~SpDGr~lyv~~-------~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV------HISRLSASGRYLFVIG-------RDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCE------EEEEECTTSCEEEEEE-------TTSEEEEEETTSSSCCEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCc------cceEECCCCCEEEEEc-------CCCeEEEEECCCCCCcEeE
Confidence 455543 3468999999987654321121111 112221 55788765 2347999999622223333
Q ss_pred CCCCCCceeeEEEe------CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cC--CC--------CCCCcceeEEEEC
Q 012701 235 RMNAPRCLFGSASL------GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LP--SM--------KNPRKMCSGVFMD 297 (458)
Q Consensus 235 ~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~--~~--------p~~r~~~~~~~~~ 297 (458)
.++....-...+.. +..+|+..-. .+.+.++|..+.+=.. ++ .+ |.+|.....+..+
T Consensus 235 ~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 235 EIKIGSEARSIETSKMEGWEDKYAIAGAYW------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEE------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred EEecCCCCceeEEccccCCCCCEEEEEEcc------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 33322222233333 4477777432 3567888977764322 11 11 1222222112223
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECC-EEEEEEcCCCeEEE
Q 012701 298 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNN-ELYAADYADMEVRK 375 (458)
Q Consensus 298 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~-~lyv~gg~~~~v~~ 375 (458)
+..+++.- .....+...|..+.....+..++..+.-+ .... -++ .+|+.....+.|.+
T Consensus 309 ~~~~vv~~------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~--------------d~~~~pdgr~~~va~~~sn~V~V 368 (567)
T 1qks_A 309 RPEFIVNV------KETGKILLVDYTDLNNLKTTEISAERFLH--------------DGGLDGSHRYFITAANARNKLVV 368 (567)
T ss_dssp SSEEEEEE------TTTTEEEEEETTCSSEEEEEEEECCSSEE--------------EEEECTTSCEEEEEEGGGTEEEE
T ss_pred CCEEEEEe------cCCCeEEEEecCCCccceeeeeecccccc--------------CceECCCCCEEEEEeCCCCeEEE
Confidence 33333321 12346778888776554444333333222 1221 234 45666666789999
Q ss_pred EeCCCCceEE---e-ccCCCccCCCCcccEEEEEe-CCEEEEEcCCCCCCCCeeeEEEeecCCC---CCCceEeeccC
Q 012701 376 YDKERRLWFT---I-GRLPERANSMNGWGLAFRAC-GDRLIVIGGPKASGEGFIELNSWVPSEG---PPQWNLLARKQ 445 (458)
Q Consensus 376 yd~~~~~W~~---v-~~lp~~~~~~~~~~~a~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~---~~~W~~l~~~p 445 (458)
+|..+++=.. + +..|.+. .+..+..- ++.+|+.+-.. . ..+.+++.+.. ...|+.+..++
T Consensus 369 iD~~t~kl~~~i~vgg~~Phpg-----~g~~~~~p~~g~v~~t~~~g---~--~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 369 IDTKEGKLVAIEDTGGQTPHPG-----RGANFVHPTFGPVWATSHMG---D--DSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EETTTTEEEEEEECSSSSBCCT-----TCEEEEETTTEEEEEEEBSS---S--SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EECCCCcEEEEEeccCcCCCCc-----cceeeECCCCCcEEEeCCCC---C--CeEEEecCCCCCCccccCEEEEEEe
Confidence 9999875322 2 2334332 13443322 35677665211 1 13445554431 22487765543
No 148
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.53 E-value=0.97 Score=43.21 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE----CCEEEEEccccCCCCcccceEEEEECCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
++..++.|+.+ ..+.+||..+++-... +.........+.+ ++.+++.|+.+ ..+..||+.+
T Consensus 165 ~~~~l~t~s~D------~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~D-------g~v~~wd~~~ 229 (354)
T 2pbi_B 165 SDMQILTASGD------GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCD-------KKAMVWDMRS 229 (354)
T ss_dssp SSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETT-------SCEEEEETTT
T ss_pred CCCEEEEEeCC------CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCC-------CeEEEEECCC
Confidence 34445566544 4688899988764321 1111111111211 45777887765 3578899988
Q ss_pred CceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccE-
Q 012701 325 ETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGL- 401 (458)
Q Consensus 325 ~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~- 401 (458)
.+....-. ..... ...+.+ ++.+++.|+.++.|.+||..+..-..+-...... .+.
T Consensus 230 ~~~~~~~~---~h~~~-------------v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~-----~~~~ 288 (354)
T 2pbi_B 230 GQCVQAFE---THESD-------------VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII-----FGAS 288 (354)
T ss_dssp CCEEEEEC---CCSSC-------------EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC-----SCEE
T ss_pred CcEEEEec---CCCCC-------------eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc-----ccee
Confidence 76433211 00111 012222 5677888888899999999876433221111111 111
Q ss_pred EEE-EeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 402 AFR-ACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 402 a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++. ..++.+++.|+.+. .+.+|+...
T Consensus 289 ~~~~s~~g~~l~~g~~d~------~i~vwd~~~ 315 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDY------TINVWDVLK 315 (354)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred EEEEeCCCCEEEEEECCC------cEEEEECCC
Confidence 222 23567777776432 466777643
No 149
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.52 E-value=0.93 Score=43.32 Aligned_cols=149 Identities=10% Similarity=0.009 Sum_probs=79.2
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEE-e-CC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce-e
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-L-GE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC-S 292 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~ 292 (458)
...++++|+.+++...+.. ........+. - ++ .|+++.. .........++.+|..++.++.+.. ..+.... .
T Consensus 167 ~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~ 242 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH 242 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred cceEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence 4578999999888766542 1121122222 2 23 3544432 2111122578999998888777754 2111111 1
Q ss_pred EEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEc--
Q 012701 293 GVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADY-- 368 (458)
Q Consensus 293 ~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg-- 368 (458)
.+. -+|+.+++..... ......++.||+.+++...+...+. . . ....- +++++++.+
T Consensus 243 ~~~spdg~~l~~~~~~~--~~~~~~l~~~d~~~g~~~~l~~~~~----~----------~---~~~s~~dg~~l~~~~~~ 303 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFK--GQTDRVIYKANPETLENEEVMVMPP----C----------S---HLMSNFDGSLMVGDGCD 303 (396)
T ss_dssp EEECTTSSCEEEEEEET--TTCCEEEEEECTTTCCEEEEEECCS----E----------E---EEEECSSSSEEEEEECC
T ss_pred eEECCCCCEEEEEecCC--CCccceEEEEECCCCCeEEeeeCCC----C----------C---CCccCCCCceEEEecCC
Confidence 222 2565333333221 1112358999999888766543331 1 0 12223 666666533
Q ss_pred --------------CCCeEEEEeCCCCceEEecc
Q 012701 369 --------------ADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 369 --------------~~~~v~~yd~~~~~W~~v~~ 388 (458)
....|+++|+.+++.+.+..
T Consensus 304 ~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 304 APVDVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp C----------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred cceeeccccccccCCCCcEEEEecccCceEEccC
Confidence 23689999999888766653
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=95.51 E-value=1.1 Score=41.74 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=69.7
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEE-e-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC----
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-V-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA---- 238 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---- 238 (458)
...+..+|+.+++....-+.+.... ...++. - +..+|+.+. ....+++||+.+++-...-.++.
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCS----SCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCeEEEEECCCCcEEEEEecCCCCC----CceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcEEEEEEccccccc
Confidence 4567889998876543322222000 011122 2 346777763 33579999999886543222211
Q ss_pred -CCceeeEEEe--CCEEEEEecc--CCCCC---ccCeEEEEeCCCCcEEE-cCCCCCCCcceeEEE-ECCEEEEEccccC
Q 012701 239 -PRCLFGSASL--GEIAILAGGS--DLEGN---ILSSAEMYNSETQTWKV-LPSMKNPRKMCSGVF-MDGKFYVIGGIGG 308 (458)
Q Consensus 239 -~r~~~~~~~~--~~~lyv~GG~--~~~~~---~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~g~lyv~GG~~~ 308 (458)
...-...+.. +..||+.+.. ..... ....+.+||+.+++-.. +.....++...+.++ -+|++|+.++
T Consensus 90 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~--- 166 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP--- 166 (349)
T ss_dssp EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS---
T ss_pred ccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccC---
Confidence 0111222332 3466666521 00000 02578999998743211 111112222222333 3777777421
Q ss_pred CCCcccceEEEEECCCCceE
Q 012701 309 SDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 309 ~~~~~~~~v~~yd~~~~~W~ 328 (458)
.+.+||+.+.+-.
T Consensus 167 -------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 167 -------DIYKMDVKTGKYT 179 (349)
T ss_dssp -------SEEEECTTTCCEE
T ss_pred -------cEEEEeCCCCcee
Confidence 2788898877643
No 151
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.45 E-value=3.1 Score=43.77 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=66.3
Q ss_pred EEEEEeccceEEEEecCCC--cEEeCCCCCCCccc-c-c--cCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--
Q 012701 158 WVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECF-M-C--SDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-- 229 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~-~-~--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 229 (458)
.+|+......++++|..+. .|..-...+..... . + .....+..++.||+.. ....++.+|..|++
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-------LDGRLIALDAKTGKAI 140 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-------TTSEEEEEETTTCCEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc-------CCCEEEEEECCCCCEe
Confidence 3455555567888998876 58765443321100 0 0 0123355688888764 33579999999875
Q ss_pred eeeCCCCCC--CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEE
Q 012701 230 WSSGMRMNA--PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKV 280 (458)
Q Consensus 230 W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 280 (458)
|+.-..-+. .....+-++.++.||+..+.... .....+..||..|++ |+.
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~-~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY-GVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEE
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCc-CCCCEEEEEECCCCcEEEEe
Confidence 875432111 11222345568888875432211 124679999999886 875
No 152
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.83 Score=44.01 Aligned_cols=192 Identities=10% Similarity=0.073 Sum_probs=94.6
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCc------ee-eCCCCC-CCCceeeEEEe-C-CEEEEEeccCCCCCccCeEEEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNS------WS-SGMRMN-APRCLFGSASL-G-EIAILAGGSDLEGNILSSAEMY 271 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~------W~-~~~~~p-~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~y 271 (458)
+.+++.|+. ...+.+||..+.. -. .+.... ....-.+++.. + +.+++.|+.+ ..+.+|
T Consensus 126 ~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~iw 193 (416)
T 2pm9_A 126 DNVLASGGN------NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS------NFASIW 193 (416)
T ss_dssp TTBEEEECS------SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEEE
T ss_pred CCEEEEEcC------CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEEE
Confidence 556666643 3468889988765 11 111111 11111222222 2 5677777755 458899
Q ss_pred eCCCCcEEEcCCCCC-----CCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 272 NSETQTWKVLPSMKN-----PRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 272 d~~t~~W~~~~~~p~-----~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
|..+++-...-..+. .....+.+.. ++ .+++.|+.++. ...+.+||+.+..- .+..+.......
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~----~~~i~~~d~~~~~~-~~~~~~~~~~~~---- 264 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN----DPSILIWDLRNANT-PLQTLNQGHQKG---- 264 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS----SCCCCEEETTSTTS-CSBCCCSCCSSC----
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC----CceEEEEeCCCCCC-CcEEeecCccCc----
Confidence 998876443322221 1112222333 33 56777665421 12567889877431 111111011111
Q ss_pred CCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCC-EEEEEcCCCCCCC
Q 012701 345 EMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGPKASGE 421 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~lyv~GG~~~~~~ 421 (458)
...++.. ++.+++.++.++.|.+||..+.+- +..+....... ...++ .-++ .+++.|+.+.
T Consensus 265 --------v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v--~~~~~-s~~~~~~l~s~~~d~--- 328 (416)
T 2pm9_A 265 --------ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWC--FKTKF-APEAPDLFACASFDN--- 328 (416)
T ss_dssp --------EEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCC--CCEEE-CTTCTTEEEECCSSS---
T ss_pred --------eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCce--EEEEE-CCCCCCEEEEEecCC---
Confidence 0022322 677888888889999999887643 22222111110 12222 2234 6888887532
Q ss_pred CeeeEEEeecCC
Q 012701 422 GFIELNSWVPSE 433 (458)
Q Consensus 422 ~~~~~~~~~~~~ 433 (458)
.+.+|+...
T Consensus 329 ---~i~iw~~~~ 337 (416)
T 2pm9_A 329 ---KIEVQTLQN 337 (416)
T ss_dssp ---EEEEEESCC
T ss_pred ---cEEEEEccC
Confidence 466777654
No 153
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=95.43 E-value=0.58 Score=43.22 Aligned_cols=150 Identities=13% Similarity=0.029 Sum_probs=82.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.||+++. ....+++||+.++ .+.... +.. .-.+.+.. ++.+|+.... ...+.+||+.+++.+
T Consensus 39 g~~l~~~~~------~~~~i~~~~~~~~-~~~~~~-~~~-~~~~l~~~~dg~l~v~~~~------~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 39 RSAVIFSDV------RQNRTWAWSDDGQ-LSPEMH-PSH-HQNGHCLNKQGHLIACSHG------LRRLERQREPGGEWE 103 (296)
T ss_dssp GTEEEEEEG------GGTEEEEEETTSC-EEEEES-SCS-SEEEEEECTTCCEEEEETT------TTEEEEECSTTCCEE
T ss_pred CCEEEEEeC------CCCEEEEEECCCC-eEEEEC-CCC-CcceeeECCCCcEEEEecC------CCeEEEEcCCCCcEE
Confidence 345777763 3457999999988 555432 111 11233332 5678776432 256899999998887
Q ss_pred EcCCCCC----CCcceeEEEECCEEEEE----cccc------CCCCcccceEEEEECCCCceEEcCC-CCCCCCCCCCCC
Q 012701 280 VLPSMKN----PRKMCSGVFMDGKFYVI----GGIG------GSDSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGT 344 (458)
Q Consensus 280 ~~~~~p~----~r~~~~~~~~~g~lyv~----GG~~------~~~~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~ 344 (458)
.+..... .+....++.-+|+||+. |... .........++.||+. .+...+.. +..+
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~-------- 174 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP-------- 174 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE--------
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC--------
Confidence 6532211 11122222337889986 4321 0001112478899987 55544321 1111
Q ss_pred CCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCC-CCce
Q 012701 345 EMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKE-RRLW 383 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~-~~~W 383 (458)
..++.. ++++++.+...+.|++||+. +++.
T Consensus 175 ---------~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 175 ---------NGLAFLPSGNLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp ---------EEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred ---------ccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence 133333 56666666667899999986 4555
No 154
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=95.42 E-value=2.9 Score=44.00 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCC--------CceeeEEEeCCEEEEEeccCCCCCccCe
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSS 267 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 267 (458)
++.++.||+.. ....++.+|..|++ |+.-...+.. ....+.++.+++||+... -..
T Consensus 63 ~v~~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~ 128 (668)
T 1kv9_A 63 LFHDGVIYTSM-------SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGR 128 (668)
T ss_dssp EEETTEEEEEE-------GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSE
T ss_pred EEECCEEEEEC-------CCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCE
Confidence 67799999986 34579999998874 8765433211 011234567888887632 256
Q ss_pred EEEEeCCCCc--EEEcCCCCC--CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEE
Q 012701 268 AEMYNSETQT--WKVLPSMKN--PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTE 329 (458)
Q Consensus 268 v~~yd~~t~~--W~~~~~~p~--~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~ 329 (458)
+..+|..|++ |+.-..-+. .....+.++.++++|+-.+.. .......++.||+.+.+ |+.
T Consensus 129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA--EYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCC--CcCCCCEEEEEECCCCcEEEEe
Confidence 8999999886 886432111 122233456799988743321 11233578999998776 875
No 155
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.40 E-value=2.3 Score=41.81 Aligned_cols=195 Identities=13% Similarity=0.051 Sum_probs=101.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEE-eCCEEEEEcCCCCCcCccceEEEEEcCCCc-eeeCCCCC--CCCc
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILTNS-WSSGMRMN--APRC 241 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p--~~r~ 241 (458)
..+..+|+.++.-..+....... +..+. -++.||+.... ....++++++.++. ...+..+. ....
T Consensus 152 ~~I~~id~~~g~~~~~~~~~~~~------~ia~~~~g~~l~~~d~~-----~~~~I~~~d~~~~~~~~~~g~~~~~~~~~ 220 (409)
T 3hrp_A 152 PRVRLISVDDNKVTTVHPGFKGG------KPAVTKDKQRVYSIGWE-----GTHTVYVYMKASGWAPTRIGQLGSTFSGK 220 (409)
T ss_dssp TEEEEEETTTTEEEEEEETCCBC------BCEECTTSSEEEEEBSS-----TTCEEEEEEGGGTTCEEEEEECCTTSCSC
T ss_pred CcEEEEECCCCEEEEeeccCCCC------ceeEecCCCcEEEEecC-----CCceEEEEEcCCCceeEEeeeccchhcCC
Confidence 46778898877554443221111 10111 24567777532 12279999997653 23331111 1111
Q ss_pred eeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC---CCCCCCcc-e-eEEEE--CCEEEEEccccCCCCc
Q 012701 242 LFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP---SMKNPRKM-C-SGVFM--DGKFYVIGGIGGSDSK 312 (458)
Q Consensus 242 ~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~-~-~~~~~--~g~lyv~GG~~~~~~~ 312 (458)
-++.++. ++.||+... ...+++||+.+.....+. ........ . ..++. ++.||+....
T Consensus 221 p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------ 287 (409)
T 3hrp_A 221 IGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------ 287 (409)
T ss_dssp CCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------
T ss_pred cEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------
Confidence 2333333 679999421 247999999988755541 11111222 1 44554 5899997432
Q ss_pred ccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEc-CCCeEEEEeCCCCceEEec
Q 012701 313 VLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADY-ADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 313 ~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg-~~~~v~~yd~~~~~W~~v~ 387 (458)
...|++||+... ...+..... ..+...|....+....|..+++. ++.||+... ....|.++|+.++.-..+.
T Consensus 288 -~~~I~~~~~~g~-~~~~~g~~~-~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 288 -LSSVYKITPDGE-CEWFCGSAT-QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp -TTEEEEECTTCC-EEEEEECTT-CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred -CCEEEEEecCCC-EEEEEeCCC-CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 247889988755 222211110 00110110000111122244444 578999998 8899999997777766654
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=95.40 E-value=0.55 Score=43.64 Aligned_cols=151 Identities=16% Similarity=0.172 Sum_probs=73.9
Q ss_pred EEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC-CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC
Q 012701 158 WVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG-TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM 236 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 236 (458)
+++.......+..+|+.+.+-...-.++..... .....+.-+ ..+|+.+. ....+++||+.+++-...-..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPT--PMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTC--CCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCC--ccceEEcCCCCEEEEEeC------CCCeEEEEECCCCCeEeeEEc
Confidence 344444456788899888755432222220000 001112223 46777763 235799999988765332111
Q ss_pred CCC----CceeeEEEe--CCEEEEEeccC---CCCC--ccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCE-EEEE
Q 012701 237 NAP----RCLFGSASL--GEIAILAGGSD---LEGN--ILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGK-FYVI 303 (458)
Q Consensus 237 p~~----r~~~~~~~~--~~~lyv~GG~~---~~~~--~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~-lyv~ 303 (458)
+.+ ..-...+.. +..||+..... .... ....+.+||..+++....-.. +......++ -+++ ||+.
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~ 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGL 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEE
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--CCCcceeEECCCCCEEEEe
Confidence 110 011222332 34777774210 0000 136799999988765432111 112222333 2555 6665
Q ss_pred ccccCCCCcccceEEEEECCCCceE
Q 012701 304 GGIGGSDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 304 GG~~~~~~~~~~~v~~yd~~~~~W~ 328 (458)
. ..+.+||+.+.+-.
T Consensus 153 ~----------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 153 G----------RDLHVMDPEAGTLV 167 (337)
T ss_dssp S----------SSEEEEETTTTEEE
T ss_pred C----------CeEEEEECCCCcEe
Confidence 1 24888999887643
No 157
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.38 E-value=1.4 Score=42.07 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--C-CEEEEEeccCCCCCccCeEEEEeCCCCc--
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--G-EIAILAGGSDLEGNILSSAEMYNSETQT-- 277 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (458)
.+++.|+. ...+.+||..+..-... +........+..+ + ..+++.|+.+ ..+.+||..+..
T Consensus 157 ~~~~~~~~------~~~v~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~~~~ 222 (408)
T 4a11_B 157 CLVAVGTR------GPKVQLCDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASAD------SRVKLWDVRRASGC 222 (408)
T ss_dssp CEEEEEES------SSSEEEEESSSSCCCEE--ECCCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCSSCC
T ss_pred cEEEEEcC------CCeEEEEeCCCcceeee--ecCCCCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCCCcc
Confidence 35555543 34688999887643211 1111111222222 2 3377777765 347888887653
Q ss_pred EEEcCC--------C----CCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCC
Q 012701 278 WKVLPS--------M----KNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 343 (458)
Q Consensus 278 W~~~~~--------~----p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~ 343 (458)
...+.. . .........+.+ +++.++.|+.+ ..+.+||+.+.+-.............
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~--- 292 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-------NRMRLWNSSNGENTLVNYGKVCNNSK--- 292 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCBCCCCCCCCCCCCS---
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-------CeEEEEECCCCccceecccccccccc---
Confidence 222210 0 111111122222 66777777655 35788999876532211100000000
Q ss_pred CCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCC
Q 012701 344 TEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEG 422 (458)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~ 422 (458)
...........+..+++++..+.+.+||..+.+-. ..+...... -.++. ..++.+++.|+.+.
T Consensus 293 ------~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~----v~~~~~s~~~~~l~s~~~dg---- 356 (408)
T 4a11_B 293 ------KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI--TMLKGHYKT----VDCCVFQSNFQELYSGSRDC---- 356 (408)
T ss_dssp ------SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE--EEECCCSSC----EEEEEEETTTTEEEEEETTS----
T ss_pred ------ccceeEEecCCCceEEEEecCCEEEEEECcCCcce--eeeccCCCe----EEEEEEcCCCCEEEEECCCC----
Confidence 00000122223344455556688999998776532 222211111 12222 33567777776532
Q ss_pred eeeEEEeecCC
Q 012701 423 FIELNSWVPSE 433 (458)
Q Consensus 423 ~~~~~~~~~~~ 433 (458)
.+.+|+++.
T Consensus 357 --~i~iw~~~~ 365 (408)
T 4a11_B 357 --NILAWVPSL 365 (408)
T ss_dssp --CEEEEEECC
T ss_pred --eEEEEeCCC
Confidence 467777654
No 158
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.36 E-value=0.16 Score=54.16 Aligned_cols=202 Identities=14% Similarity=0.054 Sum_probs=106.1
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCC----ceeeC--CCC
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTN----SWSSG--MRM 236 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~--~~~ 236 (458)
...+..+|+.+.....+....... ..++. .++.||+.-- ..+.|+++++.+. .-..+ ..+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p------~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~~~ 452 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNV------VALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI 452 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTC------CCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCSCC
T ss_pred ccceEEEeCCCCcceeeeccCcce------EEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeCCC
Confidence 346777888777666543322111 11122 2678888742 2356888988751 11111 112
Q ss_pred CCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC--CCCCCcceeEEE--ECCEEEEEccccCCC
Q 012701 237 NAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS--MKNPRKMCSGVF--MDGKFYVIGGIGGSD 310 (458)
Q Consensus 237 p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~--~p~~r~~~~~~~--~~g~lyv~GG~~~~~ 310 (458)
..| .++++ .++.||+.-. ....+.++++....-+.+.. +..|+ .+++ .++.||+.--
T Consensus 453 ~~P---~glavD~~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~----- 515 (699)
T 1n7d_A 453 QAP---DGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDW----- 515 (699)
T ss_dssp --C---CCEECCCSSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCC-----
T ss_pred CCc---ceEEEEeeCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEccc-----
Confidence 122 23333 4678998732 23568999988765554432 22222 2233 2678887631
Q ss_pred CcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEecc
Q 012701 311 SKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~ 388 (458)
.....|+++++....-+.+..-.. ..|..+++- +++||+.......|+++|+....-+.+..
T Consensus 516 -~~~~~I~~~~~dG~~~~~l~~~~l---------------~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~ 579 (699)
T 1n7d_A 516 -GTPAKIKKGGLNGVDIYSLVTENI---------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE 579 (699)
T ss_dssp -SSSCCEEBCCSSSCCCCEESCSSC---------------SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC
T ss_pred -CCCCeEEEEeCCCCCeeEEEeCCC---------------CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe
Confidence 112457777775433222211000 112245553 68999999888999999997655444433
Q ss_pred CCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 389 LPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 389 lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
.+.... +..++++.++.||+.-.
T Consensus 580 ~~~~~~----~P~glavd~~~lywtd~ 602 (699)
T 1n7d_A 580 DEKRLA----HPFSLAVFEDKVFWTDI 602 (699)
T ss_dssp CSSSCS----SCCCCEEETTEEEEECS
T ss_pred cCCcCC----CceEeEEECCEEEEEeC
Confidence 221111 12334456789998863
No 159
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=95.35 E-value=1 Score=46.91 Aligned_cols=156 Identities=10% Similarity=-0.061 Sum_probs=81.1
Q ss_pred cceEEEEEcCC------CceeeCC-CCCCCCceeeEEEeCC-EEEEEeccCCCCC--ccCeEEEEeCC-CC---cEEEcC
Q 012701 217 SHVIYRYSILT------NSWSSGM-RMNAPRCLFGSASLGE-IAILAGGSDLEGN--ILSSAEMYNSE-TQ---TWKVLP 282 (458)
Q Consensus 217 ~~~v~~yd~~t------~~W~~~~-~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~--~~~~v~~yd~~-t~---~W~~~~ 282 (458)
...++++|..+ +..+.+. .-. .........-++ .|++.. .+.... ....++++|.. ++ ..+.+.
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~SpDG~~la~~~-~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~ 237 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDAH-RFVTGPRLSPDGRQAVWLA-WDHPRMPWEGTELKTARVTEDGRFADTRTLL 237 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSCS-SEECCCEECTTSSEEEEEE-ECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecCC-CcccCceECCCCCEEEEEE-CCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence 36799999988 6666654 211 111111122244 444443 332111 12579999998 56 344432
Q ss_pred CCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-C
Q 012701 283 SMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-N 360 (458)
Q Consensus 283 ~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~ 360 (458)
.-. .......+. -||+||+.+..++ ...++.+|+.+.++..+.......... ........++.. +
T Consensus 238 ~~~-~~~~~~~~~spdg~l~~~~~~~~-----~~~l~~~~~~~~~~~~l~~~~~~~~~p-------~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 238 GGP-EEAIAQAEWAPDGSLIVATDRTG-----WWNLHRVDPATGAATQLCRREEEFAGP-------LWTPGMRWFAPLAN 304 (662)
T ss_dssp EET-TBCEEEEEECTTSCEEEEECTTS-----SCEEEEECTTTCCEEESSCCSSBSSCC-------CCSTTCCSEEECTT
T ss_pred CCC-CceEcceEECCCCeEEEEECCCC-----CeEEEEEECCCCceeecccccccccCc-------cccccCceEeEeCC
Confidence 211 111222232 3788877765431 236899999899998876432211100 000000123443 6
Q ss_pred CEEEEEEcC-CCeEEEEeCCCCceEEec
Q 012701 361 NELYAADYA-DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 361 ~~lyv~gg~-~~~v~~yd~~~~~W~~v~ 387 (458)
+++++.+.. ...++.+|..++..+.+.
T Consensus 305 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 305 GLIAVVHGKGAAVLGILDPESGELVDAA 332 (662)
T ss_dssp SCEEEEEBSSSCEEEEEETTTTEEEECC
T ss_pred CEEEEEEEcCccEEEEEECCCCcEEEec
Confidence 777776544 246777798888776664
No 160
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.32 E-value=2.3 Score=41.41 Aligned_cols=173 Identities=10% Similarity=0.000 Sum_probs=97.7
Q ss_pred cceEEEEecCCCcEEeCCC--CCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCCC
Q 012701 165 LLEWEAFDPIRRRWMHLPR--MTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMNA 238 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~--~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~ 238 (458)
...++.+++.......+.. +..+. .+++ .++.||+.-. ..+.|+++++....-+.+. .+..
T Consensus 137 ~~~I~r~~~~g~~~~~~~~~~~~~p~-------glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~~~l~~ 203 (386)
T 3v65_B 137 LDRILRANLNGSNVEEVVSTGLESPG-------GLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLWQSLEK 203 (386)
T ss_dssp TTEEEEEETTSCCEEEEECSSCSCCC-------CEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEECSSCSC
T ss_pred CCcEEEEecCCCCcEEEEeCCCCCcc-------EEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeecCCCCC
Confidence 3567788887765544321 21111 1222 3689998853 2346888887654433321 2222
Q ss_pred CCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce-eEEE--ECCEEEEEccccCCCCcc
Q 012701 239 PRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC-SGVF--MDGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 239 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~--~~g~lyv~GG~~~~~~~~ 313 (458)
| .+.++. ++.||+.--.. ...++++++....-+.+... ..... ..++ .+++||+.-. .
T Consensus 204 P---~giavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~--~~~~PnGlavd~~~~~lY~aD~-------~ 266 (386)
T 3v65_B 204 P---RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRRMYWVDA-------K 266 (386)
T ss_dssp E---EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEEEECS--SCSCEEEEEEEGGGTEEEEEET-------T
T ss_pred C---cEEEEEcCCCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC--CCCCeeeEEEeCCCCEEEEEEC-------C
Confidence 2 233343 67999884211 36799999876543333211 11222 2333 3689999832 2
Q ss_pred cceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 314 LTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 314 ~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
...|+++|+....-..+.... . ..|.++++.++.||+.....+.|.++|..+++
T Consensus 267 ~~~I~~~d~dG~~~~~~~~~~---~------------~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 267 HHVIERANLDGSHRKAVISQG---L------------PHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TTEEEEECTTSCSCEEEECSS---C------------SSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCeeEEEEECC---C------------CCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 357899998753322221100 0 11226777899999999888999999965544
No 161
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.30 E-value=0.9 Score=43.45 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=73.3
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSG 293 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~ 293 (458)
...+.+||+.+++-...-.-.... -.+.... ++.+++.|+.+ ..+.+||..+++....-. ........
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~--~h~~~v~~ 245 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFE--THESDVNS 245 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEEC--CCSSCEEE
T ss_pred CCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEec--CCCCCeEE
Confidence 456889999887643211001111 1111111 34677788766 458889998876533211 11111222
Q ss_pred EEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcC
Q 012701 294 VFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYA 369 (458)
Q Consensus 294 ~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~ 369 (458)
+.+ ++.+++.|+.+ ..+..||+.+..-..+-......... ..+.+ ++.+++.|+.
T Consensus 246 v~~~p~~~~l~s~s~D-------~~v~lwd~~~~~~~~~~~~~~~~~~~--------------~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 246 VRYYPSGDAFASGSDD-------ATCRLYDLRADREVAIYSKESIIFGA--------------SSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCTTCCSCE--------------EEEEECTTSSEEEEEET
T ss_pred EEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCCCcccce--------------eEEEEeCCCCEEEEEEC
Confidence 222 67777777765 35788998876432211111111111 12222 6788888888
Q ss_pred CCeEEEEeCCCCc
Q 012701 370 DMEVRKYDKERRL 382 (458)
Q Consensus 370 ~~~v~~yd~~~~~ 382 (458)
++.|.+||..+..
T Consensus 305 d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 305 DYTINVWDVLKGS 317 (354)
T ss_dssp TSCEEEEETTTCS
T ss_pred CCcEEEEECCCCc
Confidence 8999999987654
No 162
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.28 E-value=3.4 Score=43.18 Aligned_cols=206 Identities=13% Similarity=0.058 Sum_probs=117.6
Q ss_pred eeEEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCceee
Q 012701 156 EHWVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNSWSS 232 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 232 (458)
+++|.+. ...++...|..+..=..+-+++.-.. ...+++ ++.||+..- ..+.|+++++.....+.
T Consensus 6 ~~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~-----~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~ 73 (628)
T 4a0p_A 6 EAFLLFS-RRADIRRISLETNNNNVAIPLTGVKE-----ASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEH 73 (628)
T ss_dssp CCEEEEE-ETTEEEEEESSCTTCEEECCCCSCSC-----EEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEE
T ss_pred CcEEEEE-eCCcEEEEECCCCCcceEEEcCCCCc-----eEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEE
Confidence 5566554 45678888887654333323322111 112232 688998853 34578999987765554
Q ss_pred CCCCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC--CCCCCCcceeEEEE--CCEEEEEccc
Q 012701 233 GMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP--SMKNPRKMCSGVFM--DGKFYVIGGI 306 (458)
Q Consensus 233 ~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~~--~g~lyv~GG~ 306 (458)
+...... .-.+.++ .++.||+.-. ....++++++....=+.+. .+..| ...++. +|.||+.--
T Consensus 74 v~~~g~~-~P~GlAvD~~~~~LY~tD~------~~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~- 142 (628)
T 4a0p_A 74 VVEFGLD-YPEGMAVDWLGKNLYWADT------GTNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEW- 142 (628)
T ss_dssp EECSSCS-CCCEEEEETTTTEEEEEET------TTTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEEC-
T ss_pred EEeCCCC-CcceEEEEeCCCEEEEEEC------CCCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCC-
Confidence 4322111 1124444 4789999833 2367999998765433332 23222 233443 689999731
Q ss_pred cCCCCcccceEEEEECCCCceEEcCC-CCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 307 GGSDSKVLTCGEEYDLETETWTEIPN-MSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 307 ~~~~~~~~~~v~~yd~~~~~W~~i~~-~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
.....|+++++....-+.+.. +.. |..+++- +++||+.....+.|+++|+....=
T Consensus 143 -----g~~~~I~r~~~dG~~~~~l~~~~~~-----------------P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 143 -----GGKPKIDRAAMDGSERTTLVPNVGR-----------------ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200 (628)
T ss_dssp -----SSSCEEEEEETTSCSCEEEECSCSS-----------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred -----CCCCEEEEEeCCCCceEEEECCCCC-----------------cceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence 113478889887655444321 111 1245554 689999998889999999876433
Q ss_pred EEec-cCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 384 FTIG-RLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 384 ~~v~-~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
+.+. .++. ..++++.++.||+.-
T Consensus 201 ~v~~~~l~~--------P~glav~~~~ly~tD 224 (628)
T 4a0p_A 201 EVIADDLPH--------PFGLTQYQDYIYWTD 224 (628)
T ss_dssp EEEEECCSC--------EEEEEEETTEEEEEE
T ss_pred EEeeccCCC--------ceEEEEECCEEEEec
Confidence 3332 2222 234556778999875
No 163
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.25 E-value=1.9 Score=40.06 Aligned_cols=146 Identities=15% Similarity=0.054 Sum_probs=75.9
Q ss_pred CCE-EEEEcCCCCCcCccceEEEEEc-CCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc-
Q 012701 201 GTE-LLVFGRELTAHHISHVIYRYSI-LTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT- 277 (458)
Q Consensus 201 ~~~-lyv~GG~~~~~~~~~~v~~yd~-~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 277 (458)
++. +++.|+. ...+.+||. .++....+...+....-.+++...+.+++.|+.+ ..+.+||..+..
T Consensus 67 ~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 67 NTDLQIYVGTV------QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGD 134 (342)
T ss_dssp SSSEEEEEEET------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTT
T ss_pred CCCcEEEEEcC------CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEccccccc
Confidence 455 5566643 356899999 8887766544212222222333325555666654 457888876400
Q ss_pred ------EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCC-Cc--eEEcCCCCCCCCCCCCCCCCCC
Q 012701 278 ------WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLET-ET--WTEIPNMSPARGGAARGTEMPA 348 (458)
Q Consensus 278 ------W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~-~~--W~~i~~~p~~r~~~~~~~~~~~ 348 (458)
.+.+..+.....-.+++...+. +++|+.+ ..+..||+.+ .. ...... +....-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~-~~~~~i~-------- 197 (342)
T 1yfq_A 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN-------SQVQWFRLPLCEDDNGTIEES-GLKYQIR-------- 197 (342)
T ss_dssp BCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST-------TEEEEEESSCCTTCCCEEEEC-SCSSCEE--------
T ss_pred ccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC-------CeEEEEECCccccccceeeec-CCCCcee--------
Confidence 2222233322222333444555 5555443 3688899887 33 221111 1111101
Q ss_pred CcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCC
Q 012701 349 SAEAPPLVAVV--NNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 349 ~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
.++.. ++.+++.++..+.+.+||....
T Consensus 198 ------~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 198 ------DVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------EEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------EEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 23333 5678888888888888877654
No 164
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.77 Score=43.14 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=35.7
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCC-cEEEcCCCCCCCcce-eEEE-ECCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQ-TWKVLPSMKNPRKMC-SGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r~~~-~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
++..+++|+.+ ..+.+||..++ .-... +....... ..++ -++++++.|+.+ ..+.+||+.+.
T Consensus 186 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~ 250 (369)
T 3zwl_B 186 KGKYIIAGHKD------GKISKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD-------TNSFLVDVSTL 250 (369)
T ss_dssp GGCEEEEEETT------SEEEEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTC
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC-------ceEEEEECCCC
Confidence 45566666644 46889999873 32111 11111112 2222 267777776654 36888999876
Q ss_pred ceE
Q 012701 326 TWT 328 (458)
Q Consensus 326 ~W~ 328 (458)
+-.
T Consensus 251 ~~~ 253 (369)
T 3zwl_B 251 QVL 253 (369)
T ss_dssp CEE
T ss_pred cee
Confidence 543
No 165
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=95.21 E-value=0.48 Score=48.75 Aligned_cols=234 Identities=9% Similarity=-0.034 Sum_probs=113.1
Q ss_pred EEEEEeccceEEEEec--CCCcEE-eCCCCCCCccccccCceEEEe----CC-EEEEEcCCCCCcCccceEEEEEcCCCc
Q 012701 158 WVYFSCHLLEWEAFDP--IRRRWM-HLPRMTSNECFMCSDKESLAV----GT-ELLVFGRELTAHHISHVIYRYSILTNS 229 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp--~~~~W~-~l~~~p~~~~~~~~~~~~~~~----~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~ 229 (458)
++|+......+..||. .+.+-. .++.-..++ +..+.- ++ .||+.. + ..+.+.++|..|.+
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~------~va~sp~~~~dg~~l~v~~-~-----~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR------SVESSKFKGYEDRYTIAGA-Y-----WPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE------EEEECCSTTCTTTEEEEEE-E-----ESSEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc------eEEeCCCcCCCCCEEEEEE-c-----cCCeEEEEeccccc
Confidence 4555555577888888 554322 222111111 111222 34 555543 2 34568889988765
Q ss_pred eee-CCC--C--------CCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-
Q 012701 230 WSS-GMR--M--------NAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM- 296 (458)
Q Consensus 230 W~~-~~~--~--------p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~- 296 (458)
-.. ++. + +.+|.......- +..+|+.... ...+.++|..+.+-..+..++..+.-+..++.
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~sp 333 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDS 333 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECT
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC------CCeEEEEEecCCCcceeEEeccCcCccCceECC
Confidence 322 211 1 112222222222 4466655432 35788899876531111111223333334433
Q ss_pred CCE-EEEEccccCCCCcccceEEEEECCCCceEEc---CCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEc-C
Q 012701 297 DGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEI---PNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADY-A 369 (458)
Q Consensus 297 ~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i---~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg-~ 369 (458)
+|+ +|+.+.. .+.|.++|+.+++-... ...|.+..+. . ... ++.+|+.+. .
T Consensus 334 dg~~l~va~~~-------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~--------------~-~~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 334 SHRYFMTAANN-------SNKVAVIDSKDRRLSALVDVGKTPHPGRGA--------------N-FVHPKYGPVWSTSHLG 391 (543)
T ss_dssp TSCEEEEEEGG-------GTEEEEEETTTTEEEEEEECSSSBCCTTCE--------------E-EEETTTEEEEEEEBSS
T ss_pred CCCEEEEEecC-------CCeEEEEECCCCeEEEeeccCCCCCCCCCc--------------c-cCCCCCccEEEeccCC
Confidence 566 4444322 24688899998864432 2233332222 2 223 367888875 4
Q ss_pred CCeEEEEeCCCC-----ceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCC-CCeeeEEEeecCCC
Q 012701 370 DMEVRKYDKERR-----LWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASG-EGFIELNSWVPSEG 434 (458)
Q Consensus 370 ~~~v~~yd~~~~-----~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~ 434 (458)
.+.|.+||..+. .|+.+..++..... .+.+++..-+..||+-. ..+.. .....+.+|+.+..
T Consensus 392 d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~--~~~v~~~pdg~~l~v~~-~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 392 DGSISLIGTDPKNHPQYAWKKVAELQGQGGG--SLFIKTHPKSSHLYVDT-TFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCCEEEECC-TTCSSHHHHTCEEEEETTCT
T ss_pred CceEEEEEeCCCCCchhcCeEEEEEEcCCCC--ceEEEcCCCCCcEEEec-CCCCCcccCceEEEEECCCC
Confidence 578999998772 39888777653321 01233322344566543 11110 01235667776543
No 166
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.12 E-value=1.1 Score=42.94 Aligned_cols=144 Identities=8% Similarity=0.012 Sum_probs=79.5
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC-CCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK-NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
.+++.|+.+ ..+.+||..+......-... ....-.+++.. ++++++.|+.+ ..+..||+.+...
T Consensus 87 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 87 TTVAVGSKG------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGSVI 153 (383)
T ss_dssp TEEEEEEBT------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSCEE
T ss_pred CEEEEEcCC------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCCce
Confidence 466666654 45888999988766543322 22222233343 44677777654 3678899987766
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe
Q 012701 328 TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC 406 (458)
Q Consensus 328 ~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~ 406 (458)
..+.......... ..++.. ++.+++.|+..+.|.+||+....-..+..-.... .++...
T Consensus 154 ~~~~~~~~~~~~v-------------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v-------~~~~~~ 213 (383)
T 3ei3_B 154 QVFAKTDSWDYWY-------------CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKV-------THAEFN 213 (383)
T ss_dssp EEEECCCCSSCCE-------------EEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCE-------EEEEEC
T ss_pred EEEeccCCCCCCe-------------EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcE-------EEEEEC
Confidence 6554322111111 022222 5677788888899999999655444443211111 222222
Q ss_pred -CCE-EEEEcCCCCCCCCeeeEEEeecCC
Q 012701 407 -GDR-LIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 407 -~~~-lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++. +++.|+.+. .+.+|+...
T Consensus 214 ~~~~~~l~s~~~d~------~i~iwd~~~ 236 (383)
T 3ei3_B 214 PRCDWLMATSSVDA------TVKLWDLRN 236 (383)
T ss_dssp SSCTTEEEEEETTS------EEEEEEGGG
T ss_pred CCCCCEEEEEeCCC------EEEEEeCCC
Confidence 334 777776432 466777654
No 167
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.10 E-value=0.89 Score=42.24 Aligned_cols=148 Identities=10% Similarity=-0.015 Sum_probs=80.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.||++.- ....+++||+.++....... + ..-.+.+.. ++.+|+.. ...+.+||+.+++++
T Consensus 24 ~~~l~~~d~------~~~~i~~~d~~~~~~~~~~~-~--~~~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 24 SNSLLFVDI------PAKKVCRWDSFTKQVQRVTM-D--APVSSVALRQSGGYVATI--------GTKFCALNWKEQSAV 86 (297)
T ss_dssp TTEEEEEET------TTTEEEEEETTTCCEEEEEC-S--SCEEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEE
T ss_pred CCEEEEEEC------CCCEEEEEECCCCcEEEEeC-C--CceEEEEECCCCCEEEEE--------CCeEEEEECCCCcEE
Confidence 467887763 34579999999876544321 1 111222222 55666653 146899999999888
Q ss_pred EcCCCCCC--CcceeEEE--ECCEEEEEccccCC----CCcccceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCCc
Q 012701 280 VLPSMKNP--RKMCSGVF--MDGKFYVIGGIGGS----DSKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPASA 350 (458)
Q Consensus 280 ~~~~~p~~--r~~~~~~~--~~g~lyv~GG~~~~----~~~~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~~~~~ 350 (458)
.+...... ......+. -+|+||+..-.... .......++++|+.. +...+. .+..+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p-------------- 151 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS-------------- 151 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE--------------
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc--------------
Confidence 76543221 11112222 36888874311100 001234688888753 333321 11111
Q ss_pred CCCCEEEEE-CC-EEEEEEcCCCeEEEEeC--CCCce
Q 012701 351 EAPPLVAVV-NN-ELYAADYADMEVRKYDK--ERRLW 383 (458)
Q Consensus 351 ~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~--~~~~W 383 (458)
..++.. ++ .||+.....+.|++||. .+...
T Consensus 152 ---ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 152 ---NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp ---EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred ---cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 134443 34 68999877789999986 45544
No 168
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=95.07 E-value=0.8 Score=43.53 Aligned_cols=146 Identities=9% Similarity=0.085 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc-
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT- 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~- 277 (458)
++.+++.|+. ...+.+||..++.+..+..+........++.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 72 ~g~~l~s~s~------D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 72 CGNYLASASF------DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDE 139 (345)
T ss_dssp TSSEEEEEET------TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSC
T ss_pred CCCEEEEEEC------CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCC
Confidence 4556666643 34577888887776544333221112222222 56677777765 357788877653
Q ss_pred EEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 278 WKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 278 W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
+..+..+.........+. -++++++.|+.+ ..+..||..+..|..+..+....... ..
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-------~~i~~w~~~~~~~~~~~~~~~h~~~v-------------~~ 199 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYD-------DTVKLYREEEDDWVCCATLEGHESTV-------------WS 199 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCE-------------EE
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-------CcEEEEEecCCCEEEEEEecCCCCce-------------EE
Confidence 332222221112222222 256777777765 24778888888776443322111111 02
Q ss_pred EEEE-CCEEEEEEcCCCeEEEEeC
Q 012701 356 VAVV-NNELYAADYADMEVRKYDK 378 (458)
Q Consensus 356 ~~~~-~~~lyv~gg~~~~v~~yd~ 378 (458)
++.. ++++++.|+.++.|.+||.
T Consensus 200 l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 200 LAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEecc
Confidence 2222 5677778888888988885
No 169
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.01 E-value=1 Score=43.60 Aligned_cols=152 Identities=21% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++..++.|+ ....+.+||..+++....-... .....++.. ++.+++.|+.+ ..+.+||..++.-
T Consensus 176 ~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 176 SGDKLVSGS------GDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFL 241 (393)
T ss_dssp TSSEEEEEE------TTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCE
T ss_pred CCCEEEEec------CCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcE
Confidence 344445554 3356889999887643321111 111222222 56777788765 3588899988754
Q ss_pred EE-cCCCC---CC-Ccce-eEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC------CCCCCCCCC
Q 012701 279 KV-LPSMK---NP-RKMC-SGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA------RGGAARGTE 345 (458)
Q Consensus 279 ~~-~~~~p---~~-r~~~-~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~------r~~~~~~~~ 345 (458)
.. +.... .. .... ++++ -++++++.|+.+ ..+..||+.+..-......+.. ..++ .
T Consensus 242 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d-------~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h----~ 310 (393)
T 1erj_A 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD-------RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH----K 310 (393)
T ss_dssp EEEEC------CCCSSCEEEEEECTTSSEEEEEETT-------SEEEEEEC---------------CEEEEEECC----S
T ss_pred EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-------CEEEEEECCCCCCcccccCCCCCcceEEEecc----c
Confidence 32 21111 11 1111 2222 267777777765 3577888865432111000000 0011 0
Q ss_pred CCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 346 MPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 346 ~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
. .-..++.. ++..++.|+.++.|.+||..+..
T Consensus 311 ~-----~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 311 D-----FVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp S-----CEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred C-----cEEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 0 00012222 55667778888999999988765
No 170
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=94.97 E-value=0.89 Score=42.41 Aligned_cols=213 Identities=8% Similarity=0.024 Sum_probs=100.2
Q ss_pred ccceEEEEec-CCCcEEeCCC--CCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc-------eeeC
Q 012701 164 HLLEWEAFDP-IRRRWMHLPR--MTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS-------WSSG 233 (458)
Q Consensus 164 ~~~~~~~yDp-~~~~W~~l~~--~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-------W~~~ 233 (458)
....+..||. .+.....+.. ..... ..+....+.+++.|+ ....+.+||+.+.. .+.+
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v------~~l~~~~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGI------CRICKYGDDKLIAAS------WDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCE------EEEEEETTTEEEEEE------TTSEEEEECHHHHTTBCEEEEESCS
T ss_pred CCCeEEEEEeccCCceEeccccCCCCce------EEEEeCCCCEEEEEc------CCCeEEEEcccccccccccccCCee
Confidence 3445777888 7776655543 22111 111222134444443 33568888886510 2223
Q ss_pred CCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC-Cc--EEEcCCCCCCCcceeEEEE--CCEEEEEccccC
Q 012701 234 MRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET-QT--WKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGG 308 (458)
Q Consensus 234 ~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~--W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~ 308 (458)
..+.....-.+++...+. +++|+.+ ..+.+||..+ .. ...... +......+.+.. +++++++|+.+
T Consensus 145 ~~~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~d- 215 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSID- 215 (342)
T ss_dssp SSSSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETT-
T ss_pred eEEeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecC-
Confidence 333333333344444555 5555543 4688999987 33 221111 111112223333 57777777754
Q ss_pred CCCcccceEEEEECCCC-------ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCC
Q 012701 309 SDSKVLTCGEEYDLETE-------TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 309 ~~~~~~~~v~~yd~~~~-------~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~ 379 (458)
..+.+||.... .-..+........+. .. ......+.+ ++.+++.|+..+.|.+||..
T Consensus 216 ------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 216 ------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT----NL----AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC----SS----CCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred ------CcEEEEEEcCCCcccccccceeeeccccccccc----cc----ceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 24555555443 111111100000000 00 000022222 57777788888899999998
Q ss_pred CCceEEeccCCCc-cCCCCcccEEEEEeCCEEEEEcCCCC
Q 012701 380 RRLWFTIGRLPER-ANSMNGWGLAFRACGDRLIVIGGPKA 418 (458)
Q Consensus 380 ~~~W~~v~~lp~~-~~~~~~~~~a~~~~~~~lyv~GG~~~ 418 (458)
+.+- +..+... .. .-.+++ .++.+++.||.++
T Consensus 282 ~~~~--~~~~~~~h~~----~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 282 TRKK--IKNFAKFNED----SVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp TTEE--EEECCCCSSS----EEEEEE-ECSSEEEEEEECT
T ss_pred cHhH--hhhhhcccCC----CceEec-CCCCeEEEEecCC
Confidence 7654 3333322 11 113344 7777888877543
No 171
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.96 E-value=0.26 Score=52.69 Aligned_cols=177 Identities=8% Similarity=0.055 Sum_probs=87.6
Q ss_pred cceEEEEecCCCcEEe-CCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCC-ceeeCCCCCCCC
Q 012701 165 LLEWEAFDPIRRRWMH-LPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTN-SWSSGMRMNAPR 240 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~-l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r 240 (458)
...+..||..+++... +....... ..++. ++..++.|+ ....+.+||..++ .....-. ....
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~~~~v-------~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~~~~~~~~~-~~~~ 141 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAHPDYI-------RSIAVHPTKPYVLSGS------DDLTVKLWNWENNWALEQTFE-GHEH 141 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCE-------EEEEECSSSSEEEEEE------TTSEEEEEEGGGTSEEEEEEE-CCSS
T ss_pred CCeEEEEECCCCcEEEEEecCCCCE-------EEEEEeCCCCEEEEEc------CCCEEEEEECCCCceEEEEEc-CCCC
Confidence 3456778877765532 21111110 11222 444444553 2356889998776 2222111 1111
Q ss_pred ceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE---CCEEEEEccccCCCCcccc
Q 012701 241 CLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLT 315 (458)
Q Consensus 241 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~ 315 (458)
.-.+++.. ++.++++|+.+ ..+.+||..+..-...............+.. ++.++++|+.+ .
T Consensus 142 ~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g 208 (814)
T 3mkq_A 142 FVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD-------L 208 (814)
T ss_dssp CEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT-------S
T ss_pred cEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC-------C
Confidence 11222222 45677777755 4688899876542111111111122222322 67777777654 3
Q ss_pred eEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 316 CGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 316 ~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
.+..||..+.+-... +....... ..++.. ++.+++.++..+.|.+||..+.+-
T Consensus 209 ~i~~~d~~~~~~~~~--~~~~~~~v-------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 209 TIKIWDYQTKSCVAT--LEGHMSNV-------------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp EEEEEETTTTEEEEE--EECCSSCE-------------EEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred EEEEEECCCCcEEEE--EcCCCCCE-------------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 688899887653221 11000000 022222 566777888888999999887543
No 172
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.96 E-value=4 Score=42.21 Aligned_cols=114 Identities=12% Similarity=0.187 Sum_probs=60.6
Q ss_pred EEEEeccceEEEEecCCC--cEEeCCCCCCCccccc--cCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eee
Q 012701 159 VYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMC--SDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSS 232 (458)
Q Consensus 159 l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 232 (458)
+|+......++++|..+. .|..-...+......| .....+..++.||+.. ....++.+|..|++ |+.
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-------~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTEEEEEESSSCCEEEEE
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-------CCCEEEEEECCCCCEEeee
Confidence 444444344888998876 5876443332111000 0123355688888763 33579999999875 875
Q ss_pred CCCCCCCCc--eeeEEEeCC------EEEEEeccCCCCCccCeEEEEeCCCCc--EEE
Q 012701 233 GMRMNAPRC--LFGSASLGE------IAILAGGSDLEGNILSSAEMYNSETQT--WKV 280 (458)
Q Consensus 233 ~~~~p~~r~--~~~~~~~~~------~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 280 (458)
-..-+.... ..+-++.++ .||+. ...........+..||+.|++ |+.
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg-~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHG-SSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEEC-CBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEe-ccccccCCCCEEEEEECCCCCEEeec
Confidence 322111111 112234455 66553 221111123679999999886 865
No 173
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.93 E-value=0.69 Score=43.03 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=68.3
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc-ceeEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK-MCSGVF 295 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~ 295 (458)
...+.+||..++.-...-.............-++.+++.|+.+ ..+.+||..+++-.. .+..... -.+.++
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~~~--~~~~h~~~v~~~~~ 105 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVV--DFEAHPDYIRSIAV 105 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEE--EEECCSSCEEEEEE
T ss_pred CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------CEEEEEECCCCcEEE--EEeCCCCcEEEEEE
Confidence 3567888887765322111111111111222255566777754 468889998875321 1111111 112222
Q ss_pred -ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCe
Q 012701 296 -MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADME 372 (458)
Q Consensus 296 -~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~ 372 (458)
-++++++.|+.+ ..+..||+.++. .....+. ..... -.+++.. ++.+++.|+.++.
T Consensus 106 ~~~~~~l~sgs~D-------~~v~lWd~~~~~-~~~~~~~-~h~~~------------v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 106 HPTKPYVLSGSDD-------LTVKLWNWENNW-ALEQTFE-GHEHF------------VMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp CSSSSEEEEEETT-------SCEEEEEGGGTT-EEEEEEC-CCCSC------------EEEEEECTTCTTEEEEEETTSE
T ss_pred cCCCCEEEEECCC-------CeEEEEECCCCc-chhhhhc-ccCCc------------EEEEEECCCCCCEEEEEeCCCe
Confidence 256677777755 357788886542 1111111 11111 0022222 4567888888999
Q ss_pred EEEEeCCCC
Q 012701 373 VRKYDKERR 381 (458)
Q Consensus 373 v~~yd~~~~ 381 (458)
|.+||..+.
T Consensus 165 v~iwd~~~~ 173 (304)
T 2ynn_A 165 VKVWSLGQS 173 (304)
T ss_dssp EEEEETTCS
T ss_pred EEEEECCCC
Confidence 999998654
No 174
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=94.92 E-value=2.5 Score=39.71 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=88.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC-------CCCC-ceeeEEEe-C-CEEEEEeccCCCCCccCeEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM-------NAPR-CLFGSASL-G-EIAILAGGSDLEGNILSSAEM 270 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-------p~~r-~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~ 270 (458)
++.|||..+. ..+.|.+||+....-..+... +... .-.+.++. + +.|||.... ...+.+
T Consensus 154 ~g~lyv~d~~-----~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~ 222 (329)
T 3fvz_A 154 TGAVFVSDGY-----CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQC 222 (329)
T ss_dssp TCCEEEEECS-----SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEE
T ss_pred CCeEEEEeCC-----CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEE
Confidence 5789999742 245789999654433333211 1111 12334443 3 799999653 257999
Q ss_pred EeCCCCcEEEcCCC-CCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEc-CCCCCCCCCCCCCCCCCC
Q 012701 271 YNSETQTWKVLPSM-KNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI-PNMSPARGGAARGTEMPA 348 (458)
Q Consensus 271 yd~~t~~W~~~~~~-p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i-~~~p~~r~~~~~~~~~~~ 348 (458)
||+.+++....-.. .........++..+.+|+..|...........+.+||+.+.+.... ...+...
T Consensus 223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~----------- 291 (329)
T 3fvz_A 223 FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHF----------- 291 (329)
T ss_dssp EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCC-----------
T ss_pred EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCcc-----------
Confidence 99997776432211 1222223344455777777664322222345788999888775543 2111111
Q ss_pred CcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCC
Q 012701 349 SAEAPPLVAVV-NNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 349 ~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~ 380 (458)
..+..+++. +|.||+.....+.|++|++..
T Consensus 292 --~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 292 --DMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp --SSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred --CCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 111134443 679999998888999998754
No 175
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.82 E-value=2.3 Score=38.77 Aligned_cols=143 Identities=11% Similarity=0.135 Sum_probs=68.5
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc-eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS-WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+++.|+. ...+.+|+..... ...+..+........+...++.+++.|+.+ ..+.+||.......
T Consensus 70 ~~~~l~~~~~------dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~ 137 (313)
T 3odt_A 70 EKELLLFGGK------DTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWD------KTAKVWKEGSLVYN 137 (313)
T ss_dssp TTTEEEEEET------TSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTEEEEE
T ss_pred CCCEEEEecC------CCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCC------CCEEEEcCCcEEEe
Confidence 4555556543 3457777775532 122222222222223333355566666654 45778883322222
Q ss_pred EcCCCCCCCcceeEE-EE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 VLPSMKNPRKMCSGV-FM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~-~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
... . .......+ .- ++.+++.|+.+ ..+..||..+.. ..+....... -. .++
T Consensus 138 ~~~--~-~~~v~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~-~~~~~~~~~~-i~--------------~~~ 191 (313)
T 3odt_A 138 LQA--H-NASVWDAKVVSFSENKFLTASAD-------KTIKLWQNDKVI-KTFSGIHNDV-VR--------------HLA 191 (313)
T ss_dssp EEC--C-SSCEEEEEEEETTTTEEEEEETT-------SCEEEEETTEEE-EEECSSCSSC-EE--------------EEE
T ss_pred ccc--C-CCceeEEEEccCCCCEEEEEECC-------CCEEEEecCceE-EEEeccCccc-EE--------------EEE
Confidence 211 1 11111222 22 66777777654 246778843222 1221101111 11 233
Q ss_pred E-ECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 358 V-VNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 358 ~-~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
. -++. ++.++..+.+.+||..+.+
T Consensus 192 ~~~~~~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 192 VVDDGH-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp EEETTE-EEEEETTSEEEEEETTTCC
T ss_pred EcCCCe-EEEccCCCeEEEEECCchh
Confidence 3 3667 7777888999999998764
No 176
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.78 E-value=0.54 Score=45.68 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=60.9
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
+++.++.|+.+ ..+.+||..+++-...-.-. ...-.+.++. +++.++.|+.+ ..+..||+.+.+.
T Consensus 134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~~~ 199 (393)
T 1erj_A 134 DGKFLATGAED------RLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQC 199 (393)
T ss_dssp TSSEEEEEETT------SCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEE
T ss_pred CCCEEEEEcCC------CeEEEEECCCCcEEEEEccC-CCCEEEEEEcCCCCEEEEecCC-------CcEEEEECCCCee
Confidence 56667777755 45888999887543221101 1111222222 56666666654 3678899988764
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 328 TEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 328 ~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
...-... ... ..++.. ++.+++.|+.++.|.+||..+..-
T Consensus 200 ~~~~~~~---~~v-------------~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~ 241 (393)
T 1erj_A 200 SLTLSIE---DGV-------------TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241 (393)
T ss_dssp EEEEECS---SCE-------------EEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEEcC---CCc-------------EEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 3321111 011 022332 678888888899999999988754
No 177
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=94.73 E-value=4.8 Score=42.05 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=57.0
Q ss_pred cCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCC-ceEEcCCCCCCCCCCC
Q 012701 265 LSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETE-TWTEIPNMSPARGGAA 341 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~-~W~~i~~~p~~r~~~~ 341 (458)
...+++||..+++-..+............+. -+|+..+++..+. ......+..+|+.+. ....+..........
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~- 310 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVE- 310 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCC-
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeEC-
Confidence 3678999999987666543211112222222 2666444444331 123357899999988 666543211110000
Q ss_pred CCCCCCCCcCCCCEEEEE--CCEEEEEEcCC--CeEEEEeCCCCceEEec
Q 012701 342 RGTEMPASAEAPPLVAVV--NNELYAADYAD--MEVRKYDKERRLWFTIG 387 (458)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~--~~v~~yd~~~~~W~~v~ 387 (458)
. .......- ++++++.+... ..++.+|...+..+.+.
T Consensus 311 ----~-----~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 311 ----P-----LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp ----C-----CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred ----c-----cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 0 00012222 67766555433 46888887777676664
No 178
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.73 E-value=0.17 Score=50.15 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
+.+++.|+. ...|.+||..++.-..+-.+. ....-.+++. .++.+++.|+.+ ..+.+||..++..
T Consensus 132 ~~~lasGs~------dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~~~~ 199 (435)
T 4e54_B 132 PSTVAVGSK------GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKGNIL 199 (435)
T ss_dssp TTCEEEEET------TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTSCEE
T ss_pred CCEEEEEeC------CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccCCce
Confidence 345556643 345888888776543332221 1111122333 245666777765 3578899988766
Q ss_pred EEcCCCCCCC-cceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 279 KVLPSMKNPR-KMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 279 ~~~~~~p~~r-~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
..+....... ...+..+ -++++++.|+.+ ..|..||+.... +..+.. .... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-------g~i~~wd~~~~~---~~~~~~-h~~~-------------v~~ 255 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRMVVTGDNV-------GNVILLNMDGKE---LWNLRM-HKKK-------------VTH 255 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTEEEEECSS-------SBEEEEESSSCB---CCCSBC-CSSC-------------EEE
T ss_pred eEEeccCCCCccEEEEEECCCCCEEEEEeCC-------CcEeeeccCcce---eEEEec-ccce-------------EEe
Confidence 5543322211 1223333 367788887755 357888986543 211111 1111 012
Q ss_pred EEE--C-CEEEEEEcCCCeEEEEeCCCCc
Q 012701 357 AVV--N-NELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 357 ~~~--~-~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+.+ + +.+++.|+.++.|.+||+.+..
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~ 284 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVR 284 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred eeecCCCceEEEEecCcceeeEEeccccc
Confidence 222 2 3477778888899999987654
No 179
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=94.73 E-value=3.4 Score=40.21 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=103.2
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCce
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCL 242 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~ 242 (458)
...+..+|..+++...+-.+...... -..++. ++..++.|+. ...|.+||..+++-.....-.. ..
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~----V~sv~fspdg~~lasgs~------Dg~v~iWd~~~~~~~~~~~~h~--~~ 191 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEY----ISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLRNMTSHS--AR 191 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCC----EEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCS--SC
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCc----EEEEEECCCCCEEEEEEC------CCeEEEEEcCCCcEEEEEeCCC--Cc
Confidence 34677889888876554332221100 011222 5566667753 4568999998875433222122 22
Q ss_pred eeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEE
Q 012701 243 FGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEY 320 (458)
Q Consensus 243 ~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~y 320 (458)
..+...++.+.+.|+.+ ..+..+|..+...... .+.......... ..+++.++.|+.+ ..+.+|
T Consensus 192 v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~~~~-~~~~h~~~~~~~~~~~~g~~l~s~~~D-------~~v~i~ 257 (420)
T 4gga_A 192 VGSLSWNSYILSSGSRS------GHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGND-------NLVNVW 257 (420)
T ss_dssp EEEEEEETTEEEEEETT------SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEE
T ss_pred eEEEeeCCCEEEEEeCC------CceeEeeecccceeeE-EecccccceeeeeecCCCCeeeeeecc-------ccceEE
Confidence 33444566677777755 4567777765432211 111111111111 2256666666654 246677
Q ss_pred ECCCCceE--EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEE-Ec-CCCeEEEEeCCCCceEEeccCCCccC
Q 012701 321 DLETETWT--EIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAA-DY-ADMEVRKYDKERRLWFTIGRLPERAN 394 (458)
Q Consensus 321 d~~~~~W~--~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~-gg-~~~~v~~yd~~~~~W~~v~~lp~~~~ 394 (458)
|..+..-. .+..... .... -..++.. +..+++. +| .++.|.+||..++.-...-......
T Consensus 258 ~~~~~~~~~~~~~~~~~-~~~~------------V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v- 323 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQ-HQGA------------VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV- 323 (420)
T ss_dssp ESSCCSSCSCCSEEECC-CSSC------------EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE-
T ss_pred eeccccccceeeeeecc-cCCc------------eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccce-
Confidence 77654311 1100000 0111 0012221 3344444 44 4578999999887644332222111
Q ss_pred CCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 395 SMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 395 ~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
....+...++.|++.+|... ..+.+|++..
T Consensus 324 ----~~~~~~~~~~~lv~~sg~~d-----~~I~iwd~~~ 353 (420)
T 4gga_A 324 ----CSILWSPHYKELISGHGFAQ-----NQLVIWKYPT 353 (420)
T ss_dssp ----EEEEEETTTTEEEEEECTTT-----CCEEEEETTT
T ss_pred ----eeeeecCCCCeEEEEEecCC-----CEEEEEECCC
Confidence 11222223455666555432 2467777643
No 180
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.71 E-value=5.2 Score=42.28 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=73.0
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCC--------CceeeEEEeCCEEEEEeccCCCCCccCe
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP--------RCLFGSASLGEIAILAGGSDLEGNILSS 267 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 267 (458)
++.++.||+.. ....++.+|..|++ |+.-...+.. ....+.++.+++||+... -..
T Consensus 67 ~v~~g~vyv~~-------~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~ 132 (689)
T 1yiq_A 67 IVVDGVMYTTG-------PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGR 132 (689)
T ss_dssp EEETTEEEEEC-------GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSE
T ss_pred EEECCEEEEEc-------CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCE
Confidence 57799999986 34569999998874 8764433211 011234567888888642 256
Q ss_pred EEEEeCCCCc--EEEcCC-CCC--CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc--eEEc
Q 012701 268 AEMYNSETQT--WKVLPS-MKN--PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEI 330 (458)
Q Consensus 268 v~~yd~~t~~--W~~~~~-~p~--~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i 330 (458)
+..+|..|++ |+.-.. -+. .....+.++.++++|+-.+.. .......+..||..+.+ |+.-
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGA--EFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCC--ccCCCCEEEEEECCCCcEEEEec
Confidence 8999999886 886542 111 112233456799998743321 11234578999999876 8753
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=94.70 E-value=0.15 Score=48.12 Aligned_cols=154 Identities=12% Similarity=0.029 Sum_probs=84.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.||+.+.. ...+++||+.+++...+...+ ...-.+.+.. ++++|+....+.. ....+.+||+.++..+
T Consensus 55 ~g~l~~~~~~------~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~ 125 (333)
T 2dg1_A 55 QGQLFLLDVF------EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQ 125 (333)
T ss_dssp TSCEEEEETT------TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCE
T ss_pred CCCEEEEECC------CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEE
Confidence 5678877632 347999999998876643111 1122233332 5678887543211 1257899999988765
Q ss_pred E-cCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 280 V-LPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 280 ~-~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
. +........-...++ -+|++|+..... ........+++||+.+.+...+..- .... ..++
T Consensus 126 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~-------------~~i~ 188 (333)
T 2dg1_A 126 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRG-YSTNPLGGVYYVSPDFRTVTPIIQN---ISVA-------------NGIA 188 (333)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCC-BTTBCCEEEEEECTTSCCEEEEEEE---ESSE-------------EEEE
T ss_pred EEEccCccCCcccceEECCCCCEEEEeccc-cccCCCceEEEEeCCCCEEEEeecC---CCcc-------------cceE
Confidence 3 232211111122222 267888864321 0111234689999887776554210 0000 0233
Q ss_pred EE-CC-EEEEEEcCCCeEEEEeCCC
Q 012701 358 VV-NN-ELYAADYADMEVRKYDKER 380 (458)
Q Consensus 358 ~~-~~-~lyv~gg~~~~v~~yd~~~ 380 (458)
.. ++ .||+.....+.|++||+.+
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecC
Confidence 32 44 5888876678999999864
No 182
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=94.68 E-value=4.8 Score=41.80 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=62.6
Q ss_pred EEEEec-cceEEEEec-CCC--cEEeCCCCCCCc----cccccCceEEE--eCCE----EEEEcCCCCCcCccceEEEEE
Q 012701 159 VYFSCH-LLEWEAFDP-IRR--RWMHLPRMTSNE----CFMCSDKESLA--VGTE----LLVFGRELTAHHISHVIYRYS 224 (458)
Q Consensus 159 l~~~~~-~~~~~~yDp-~~~--~W~~l~~~p~~~----~~~~~~~~~~~--~~~~----lyv~GG~~~~~~~~~~v~~yd 224 (458)
+|+... ...++++|. .+. .|..-...+... +........+. .++. ||+.. ....++.+|
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t-------~dg~l~AlD 137 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ-------LDGNVAALN 137 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC-------TTSEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc-------CCCEEEEEE
Confidence 444444 456888998 776 587654433211 00000122333 4666 87764 235689999
Q ss_pred cCCCc--eeeCCCCCCC--CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEc
Q 012701 225 ILTNS--WSSGMRMNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVL 281 (458)
Q Consensus 225 ~~t~~--W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~ 281 (458)
..|++ |+.-..-+.. ....+-++.++.||+..+.... .....+..||..|++ |+.-
T Consensus 138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEE
T ss_pred CCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEc
Confidence 98875 8753211111 1112334568888775432111 123579999999886 8754
No 183
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.66 E-value=2.1 Score=42.11 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=87.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC---CCCCCCce-e-eEEEe--CCEEEEEeccCCCCCccCeEEEEeC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGM---RMNAPRCL-F-GSASL--GEIAILAGGSDLEGNILSSAEMYNS 273 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~-~-~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 273 (458)
++.||+.. ....+++||+.+.....+. ........ + ..+.. ++.||+.... .+.+.+|++
T Consensus 230 ~g~lyv~d-------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------~~~I~~~~~ 296 (409)
T 3hrp_A 230 EEWLYFVD-------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------LSSVYKITP 296 (409)
T ss_dssp SSEEEEEC-------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------TTEEEEECT
T ss_pred CCeEEEEE-------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------CCEEEEEec
Confidence 67899953 2347999999987655441 11111122 1 44444 5899998432 367899988
Q ss_pred CCCcEEEcCCCCC----------C-CcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCC
Q 012701 274 ETQTWKVLPSMKN----------P-RKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 340 (458)
Q Consensus 274 ~t~~W~~~~~~p~----------~-r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~ 340 (458)
....-........ . ......+.+ +|+|||.-.. ....|.+||+.+..-+.+...+.. .+.
T Consensus 297 ~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~------~~~~I~~~~~~~G~v~~~~g~~~~-~g~ 369 (409)
T 3hrp_A 297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF------KGYCLRKLDILDGYVSTVAGQVDV-ASQ 369 (409)
T ss_dssp TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT------TTCEEEEEETTTTEEEEEEECTTC-BSC
T ss_pred CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC------CCCEEEEEECCCCEEEEEeCCCCC-CCc
Confidence 7552222211100 0 112333333 5789998431 124689999777766555422111 111
Q ss_pred CCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCC
Q 012701 341 ARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~ 379 (458)
..|....+....|..+++- ++.||+.......|.+++++
T Consensus 370 ~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 370 IDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp CCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 1121112222333355554 48999999888999998763
No 184
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.64 E-value=1.7 Score=44.34 Aligned_cols=143 Identities=14% Similarity=0.123 Sum_probs=77.9
Q ss_pred CEEEEEecc-CCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 250 EIAILAGGS-DLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 250 ~~lyv~GG~-~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
+..+++|+. + ..+.+||..++.... ..+.........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 456 ~~~l~~~~~~d------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------g~i~iw~~~~~~ 521 (615)
T 1pgu_A 456 QNYVAVGLEEG------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM-------GKILLYDLQSRE 521 (615)
T ss_dssp SSEEEEEETTT------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTE
T ss_pred CCEEEEeecCC------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC-------CeEEEeeCCCCc
Confidence 555566664 3 458899998876643 222222222233333 78888888765 357889998765
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE------------CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccC
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV------------NNELYAADYADMEVRKYDKERRLWFTIGRLPERAN 394 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~------------~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~ 394 (458)
-... +....... ...+.. ++++++.++.++.|.+||..+.. ..+..+.....
T Consensus 522 ~~~~--~~~~h~~~-------------v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~ 585 (615)
T 1pgu_A 522 VKTS--RWAFRTSK-------------INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKD 585 (615)
T ss_dssp EEEC--CSCCCSSC-------------EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTT
T ss_pred ceeE--eecCCCCc-------------eeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCcc
Confidence 4322 22101111 022222 67888888888999999998852 11222221111
Q ss_pred CCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 395 SMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 395 ~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
.. ..+ ....++. ++.||.+. .+.+|+.+
T Consensus 586 ~v--~~l-~~s~~~~-l~s~~~d~------~v~iw~~~ 613 (615)
T 1pgu_A 586 GV--NNL-LWETPST-LVSSGADA------CIKRWNVV 613 (615)
T ss_dssp CE--EEE-EEEETTE-EEEEETTS------CEEEEEEC
T ss_pred ce--EEE-EEcCCCC-eEEecCCc------eEEEEeee
Confidence 10 112 2345667 66666432 46777764
No 185
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.63 E-value=2.6 Score=38.43 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceE
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 328 (458)
++..++.|+.+ ..+.+||..+..- .+..............-+++ ++.|+.+ ..+..||+.+.+-.
T Consensus 154 ~~~~l~~~~~d------~~i~i~d~~~~~~-~~~~~~~~~i~~~~~~~~~~-~~~~~~d-------g~i~i~d~~~~~~~ 218 (313)
T 3odt_A 154 SENKFLTASAD------KTIKLWQNDKVIK-TFSGIHNDVVRHLAVVDDGH-FISCSND-------GLIKLVDMHTGDVL 218 (313)
T ss_dssp TTTEEEEEETT------SCEEEEETTEEEE-EECSSCSSCEEEEEEEETTE-EEEEETT-------SEEEEEETTTCCEE
T ss_pred CCCEEEEEECC------CCEEEEecCceEE-EEeccCcccEEEEEEcCCCe-EEEccCC-------CeEEEEECCchhhh
Confidence 55666676654 3577888332221 12111111222222344777 5666544 36888999876532
Q ss_pred EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-e
Q 012701 329 EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-C 406 (458)
Q Consensus 329 ~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~ 406 (458)
.. +....... ..++.. ++ .++.++..+.|.+||..+.+-...-..+... -.++.. .
T Consensus 219 ~~--~~~~~~~i-------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------i~~~~~~~ 276 (313)
T 3odt_A 219 RT--YEGHESFV-------------YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAIS------IWSVDCMS 276 (313)
T ss_dssp EE--EECCSSCE-------------EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSC------EEEEEECT
T ss_pred hh--hhcCCceE-------------EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCce------EEEEEEcc
Confidence 21 11000000 023333 44 4666778899999999887654433222211 122222 3
Q ss_pred CCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 407 GDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 407 ~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
+++ ++.|+.+. .+.+|+.+.
T Consensus 277 ~~~-~~~~~~dg------~i~iw~~~~ 296 (313)
T 3odt_A 277 NGD-IIVGSSDN------LVRIFSQEK 296 (313)
T ss_dssp TSC-EEEEETTS------CEEEEESCG
T ss_pred CCC-EEEEeCCC------cEEEEeCCC
Confidence 456 44565432 467788754
No 186
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.59 E-value=2.9 Score=40.59 Aligned_cols=156 Identities=9% Similarity=0.021 Sum_probs=78.9
Q ss_pred eEEEEEcCC--CceeeCCCCCCCCceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC---CCC--C
Q 012701 219 VIYRYSILT--NSWSSGMRMNAPRCLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM---KNP--R 288 (458)
Q Consensus 219 ~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~--r 288 (458)
-+++|+... .+|+...+.......++.+.. .+.||+.+..... -..+++.+-...+|+.+... +.. +
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~~~ 108 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAPEG 108 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC--
T ss_pred ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCcccc
Confidence 477888765 789876422222223344443 4678877543211 12567777777899988632 211 1
Q ss_pred -------cceeEEEE----CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCC---CCCCCCCCCCCCCCCCcCCC-
Q 012701 289 -------KMCSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNM---SPARGGAARGTEMPASAEAP- 353 (458)
Q Consensus 289 -------~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~---p~~r~~~~~~~~~~~~~~~~- 353 (458)
...+.++. .+.||+.+.. ..+++.+-...+|+.+... |..+... .+..........
T Consensus 109 ~~~~~~~~i~~l~~~~~~~~~~l~~g~~~--------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~-~~~~~g~~~~~~i 179 (394)
T 3b7f_A 109 ETGRVVDHVFWLTPGHASEPGTWYAGTSP--------QGLFRSTDHGASWEPVAGFNDHPMRRAWT-GGEQDGTPDGPKM 179 (394)
T ss_dssp --CCCCCEEEEEEECCTTSTTCEEEEEET--------TEEEEESSTTSBCEECHHHHTCTTHHHHH-CCC----CCCCEE
T ss_pred cccccccceeEEEeCCCCCCCEEEEEecC--------CcEEEEcCCCCCeEECcCccCCccccccc-cccccCCCCCCce
Confidence 01122232 4677775421 2477787778899987532 2100000 000000000000
Q ss_pred CEEEEE---CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 354 PLVAVV---NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 354 ~~~~~~---~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
..+++. .+.||+... ...+++.+-..++|+.+.
T Consensus 180 ~~i~~d~~~~~~l~vg~~-~ggl~~s~DgG~tW~~~~ 215 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMS-SGGVFESTDAGTDWKPLN 215 (394)
T ss_dssp EEEEECTTCTTCEEEEEE-TBEEEEESSTTSSCEECC
T ss_pred eEEEECCCCCCEEEEEEC-CCCEEEECCCCCCceECC
Confidence 022222 356887643 345888888889999885
No 187
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=94.45 E-value=3.3 Score=38.92 Aligned_cols=147 Identities=8% Similarity=0.009 Sum_probs=86.7
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
.++.||+.-. ..+.|.++|+....-+.+. .+..|+ +.++ .++.||+..-.. ...++++++..
T Consensus 87 ~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~~~~~P~---~iavdp~~g~ly~~d~~~-----~~~I~~~~~dG 152 (316)
T 1ijq_A 87 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT-----PAKIKKGGLNG 152 (316)
T ss_dssp TTTEEEEEET------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS-----SCEEEEEETTS
T ss_pred cCCeEEEEEC------CCCEEEEEeCCCCceEEEEECCCCCcc---eEEeCCCCCEEEEEccCC-----CCeEEEEcCCC
Confidence 4789999842 3457889998765433321 233332 3334 378999985211 25789999875
Q ss_pred CcEEEcCCCCCCCcce-eEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 276 QTWKVLPSMKNPRKMC-SGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
..-+.+... ..... ..++- +++||+.-. ....|+++|+....-+.+...... . ..
T Consensus 153 ~~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~-------~~~~I~~~d~dg~~~~~~~~~~~~-~------------~~ 210 (316)
T 1ijq_A 153 VDIYSLVTE--NIQWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKR-L------------AH 210 (316)
T ss_dssp CCEEEEECS--SCSCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEEECTTT-T------------SS
T ss_pred CCeEEEEEC--CCCCceEEEEeccCCEEEEEEC-------CCCeEEEEecCCCceEEEeecCCc-c------------CC
Confidence 543333221 11223 33333 689999832 235789999875433333211100 0 11
Q ss_pred CCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 353 PPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
|..+++.++.||+.....+.|.++|+.+++
T Consensus 211 P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 211 PFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 226777899999999888999999987654
No 188
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.45 E-value=0.81 Score=42.14 Aligned_cols=138 Identities=10% Similarity=0.043 Sum_probs=72.1
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
.+.|.+||..|++-...-.+......-.++.+ +++.++.|+.+ ..+.+||..+++-.... ..........
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~--~~h~~~~~~~ 115 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNM--TSHSARVGSL 115 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE--ECCSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEe--cCccceEEEe
Confidence 45799999999876554333322222222222 55677778765 46888999887632221 1112222334
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEE
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVR 374 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~ 374 (458)
..++.+.+.|+.. ..+..++..+................ ......++.+++.++.++.|.
T Consensus 116 ~~~~~~l~s~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~s~~~d~~i~ 175 (318)
T 4ggc_A 116 SWNSYILSSGSRS-------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GLRWAPDGRHLASGGNDNLVN 175 (318)
T ss_dssp EEETTEEEEEETT-------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECTTSSEEEEEETTSCEE
T ss_pred ecCCCEEEEEecC-------CceEeeecCCCceeEEEEcCccCceE-------------EEEEcCCCCEEEEEecCccee
Confidence 4556666666544 23445555544322111000000000 011222566777777888999
Q ss_pred EEeCCCCc
Q 012701 375 KYDKERRL 382 (458)
Q Consensus 375 ~yd~~~~~ 382 (458)
+||..+.+
T Consensus 176 iwd~~~~~ 183 (318)
T 4ggc_A 176 VWPSAPGE 183 (318)
T ss_dssp EEESSCBT
T ss_pred EEECCCCc
Confidence 99987654
No 189
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=94.37 E-value=5.5 Score=41.16 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=68.2
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCC---Cc---eeeEEEeCCEEEEEeccCCCCCccCeEE
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP---RC---LFGSASLGEIAILAGGSDLEGNILSSAE 269 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~---r~---~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 269 (458)
++.++.||+.... +.++.+|..|++ |+.-...+.. .+ ..+.++.+++||+... -..+.
T Consensus 65 ~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~ 130 (582)
T 1flg_A 65 IVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVV 130 (582)
T ss_dssp EEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEE
T ss_pred EEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEE
Confidence 6679999998642 248999998875 8764433221 11 1344567889888632 25689
Q ss_pred EEeCCCCc--EEEcCCCCCC--CcceeEEEECC------EEEEEccccCCCCcccceEEEEECCCCc--eEE
Q 012701 270 MYNSETQT--WKVLPSMKNP--RKMCSGVFMDG------KFYVIGGIGGSDSKVLTCGEEYDLETET--WTE 329 (458)
Q Consensus 270 ~yd~~t~~--W~~~~~~p~~--r~~~~~~~~~g------~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~ 329 (458)
.+|..|++ |+.-...+.. ....+-++.++ .+|+ |... .+......++.||+.+.+ |+.
T Consensus 131 AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~-~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSG-DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBC-GGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccc-cccCCCCEEEEEECCCCCEEeec
Confidence 99999886 8764321111 11123345566 6665 3211 011123568999998765 864
No 190
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=94.37 E-value=3.1 Score=38.22 Aligned_cols=148 Identities=8% Similarity=0.115 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCC-------ceeeCCCCCCCCceeeEEEe--C--CEEEEEeccCCCCCccCeEEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTN-------SWSSGMRMNAPRCLFGSASL--G--EIAILAGGSDLEGNILSSAEM 270 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~-------~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~v~~ 270 (458)
+.+++.|+. ...+.+||..+. .|..+..+........++.+ + +.+++.|+.+ ..+.+
T Consensus 71 ~~~l~s~~~------dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~i 138 (351)
T 3f3f_A 71 GRIIASASY------DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND------GILRL 138 (351)
T ss_dssp CSEEEEEET------TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------CEEEE
T ss_pred CCEEEEEcC------CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC------CcEEE
Confidence 556666643 346888888764 23333222222222222222 2 5566777654 46888
Q ss_pred EeCCCCc----EEEc-----CCCC-CCC--cceeEEEE----CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCC
Q 012701 271 YNSETQT----WKVL-----PSMK-NPR--KMCSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 334 (458)
Q Consensus 271 yd~~t~~----W~~~-----~~~p-~~r--~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 334 (458)
||..+.+ |... .... ... ...+.... ++.++++|+.+ ..+..++........+..+.
T Consensus 139 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALE-------QAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp EECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETT-------EEEEEEECTTSCEEEEEECC
T ss_pred ecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCC-------CcEEEEccCCCceeeeeecC
Confidence 9987654 3210 0111 111 11122221 36677777654 23455666666654433332
Q ss_pred CCCCCCCCCCCCCCCcCCCCEEEEE-CC----EEEEEEcCCCeEEEEeCCCC
Q 012701 335 PARGGAARGTEMPASAEAPPLVAVV-NN----ELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 335 ~~r~~~~~~~~~~~~~~~~~~~~~~-~~----~lyv~gg~~~~v~~yd~~~~ 381 (458)
...... ..++.. ++ .+++.|+.++.|.+||..+.
T Consensus 212 ~h~~~i-------------~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 212 GHKSLI-------------RSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp CCCSCE-------------EEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCCcce-------------eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 211111 023333 33 78888888889999998764
No 191
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=94.36 E-value=1.2 Score=44.34 Aligned_cols=202 Identities=12% Similarity=0.020 Sum_probs=100.4
Q ss_pred EEEEEeccceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCcee---
Q 012701 158 WVYFSCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNSWS--- 231 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~--- 231 (458)
.||+......+..||+..+....+...... ...+++ ++.||+...... .....++.++... .|.
T Consensus 151 ~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~-------P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~~~g-~~~~~~ 220 (430)
T 3tc9_A 151 HLYLVGEQHPTRLIDFEKEYVSTVYSGLSK-------VRTICWTHEADSMIITNDQNN--NDRPNNYILTRES-GFKVIT 220 (430)
T ss_dssp EEEEEEBTEEEEEEETTTTEEEEEECCCSC-------EEEEEECTTSSEEEEEECCSC--TTSEEEEEEEGGG-TSCSEE
T ss_pred eEEEEeCCCcEEEEECCCCEEEEEecCCCC-------cceEEEeCCCCEEEEEeCCCC--cccceEEEEeCCC-ceeeee
Confidence 455543335788899998877666432111 112333 345998863211 1233567777643 333
Q ss_pred eCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCE-EEEEcccc
Q 012701 232 SGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGK-FYVIGGIG 307 (458)
Q Consensus 232 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~-lyv~GG~~ 307 (458)
.++.+..| +++++. ++.||+.-- ....+++||+.+..-..+...+....-...++ -+|+ |||.--
T Consensus 221 ~l~~~~~p---~giavdp~~g~lyv~d~------~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~-- 289 (430)
T 3tc9_A 221 ELTKGQNC---NGAETHPINGELYFNSW------NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV-- 289 (430)
T ss_dssp EEEECSSC---CCEEECTTTCCEEEEET------TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--
T ss_pred eeccCCCc---eEEEEeCCCCEEEEEEC------CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--
Confidence 33323222 334443 578888843 13579999998776533322222111112233 2455 898732
Q ss_pred CCCCcccceEEEEECC--CCceE---EcCCCCCCCCCCCCCCCCCCCcCCCC-EEEEE---------CCEEEEEEcCCCe
Q 012701 308 GSDSKVLTCGEEYDLE--TETWT---EIPNMSPARGGAARGTEMPASAEAPP-LVAVV---------NNELYAADYADME 372 (458)
Q Consensus 308 ~~~~~~~~~v~~yd~~--~~~W~---~i~~~p~~r~~~~~~~~~~~~~~~~~-~~~~~---------~~~lyv~gg~~~~ 372 (458)
....|++|+.. ++... .+...+. ..+...|....+....|. .+++. ++.||+.......
T Consensus 290 -----~~~~I~~~~~d~~~~~~~~~~~~ag~~g-~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~ 363 (430)
T 3tc9_A 290 -----NQHYILRSDYDWKTKRLTTPYIVCGQQG-AKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC 363 (430)
T ss_dssp -----TTTEEEEEEEETTTTEECCCEEEEECTT-CBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred -----CCCEEEEEeCCcccccccceEEEeccCC-CCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence 22456776544 33321 1111110 011101111111122232 34443 3689999988889
Q ss_pred EEEEeCCCCceEEec
Q 012701 373 VRKYDKERRLWFTIG 387 (458)
Q Consensus 373 v~~yd~~~~~W~~v~ 387 (458)
|.++|+. +....+.
T Consensus 364 I~~i~~~-G~v~~~~ 377 (430)
T 3tc9_A 364 IRILTPQ-GRVTTFA 377 (430)
T ss_dssp EEEECTT-SEEEEEE
T ss_pred EEEECCC-CcEEEEE
Confidence 9999964 5666554
No 192
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.35 E-value=1.9 Score=45.95 Aligned_cols=181 Identities=10% Similarity=-0.015 Sum_probs=94.4
Q ss_pred ceEEEEecCCCcEEeCCCCCCCcc-ccccCceEEE-eCCEEEEEcCCCCCcCccceEEEEEcCC------Ccee---e--
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNEC-FMCSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILT------NSWS---S-- 232 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~-~~~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t------~~W~---~-- 232 (458)
.-+..||+.++++........... ....-.+++. -++.|+|-. ...-+++||+.+ ..+. .
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT-------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 464 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIST-------CLGGIFVVDKHKLMQSTSGQYIAEQNYS 464 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEE-------SSSCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEE-------CCCceEEEccccccccCCcceecccccc
Confidence 357789999988876542111000 0000011122 146777642 123478888764 1221 0
Q ss_pred -CCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC-CcceeEEEE--CCEEEEEcccc
Q 012701 233 -GMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP-RKMCSGVFM--DGKFYVIGGIG 307 (458)
Q Consensus 233 -~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~--~g~lyv~GG~~ 307 (458)
...++... -.+.... ++.||+++|.. ..+.+||+.+++++.+..-... .....+... +|.|++- ..
T Consensus 465 ~~~~l~~~~-i~~i~~d~~g~lWi~~~t~------~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~- 535 (758)
T 3ott_A 465 VHNGLSGMF-INQIIPDNEGNVWVLLYNN------KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FH- 535 (758)
T ss_dssp GGGTCSCSC-EEEEEECTTSCEEEEETTC------SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ET-
T ss_pred cccccccce-eeeEEEcCCCCEEEEccCC------CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ec-
Confidence 11122111 1122222 56899877754 3488999999999876421111 111222233 5778864 21
Q ss_pred CCCCcccceEEEEECCCCceEEcC--CCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 308 GSDSKVLTCGEEYDLETETWTEIP--NMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 308 ~~~~~~~~~v~~yd~~~~~W~~i~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
.-+.+||+.+++++.+. .+|... .. +++.-+|.|++.. ...+.+||+.+.+...
T Consensus 536 -------~Gl~~~~~~~~~~~~~~~~gl~~~~-i~--------------~i~~~~g~lWi~t--~~Gl~~~~~~~~~~~~ 591 (758)
T 3ott_A 536 -------GGVMRINPKDESQQSISFGSFSNNE-IL--------------SMTCVKNSIWVST--TNGLWIIDRKTMDARQ 591 (758)
T ss_dssp -------TEEEEECC--CCCCBCCCCC---CC-EE--------------EEEEETTEEEEEE--SSCEEEEETTTCCEEE
T ss_pred -------CceEEEecCCCceEEecccCCCccc-eE--------------EEEECCCCEEEEC--CCCeEEEcCCCceeEE
Confidence 24788999988876653 222111 11 3445588998876 3569999999988765
Q ss_pred e
Q 012701 386 I 386 (458)
Q Consensus 386 v 386 (458)
.
T Consensus 592 ~ 592 (758)
T 3ott_A 592 Q 592 (758)
T ss_dssp C
T ss_pred e
Confidence 4
No 193
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.30 E-value=2.4 Score=40.89 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=80.7
Q ss_pred EEEEEcCCCCCcCccceEEEEEcCCCceeeCCC-CCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 203 ELLVFGRELTAHHISHVIYRYSILTNSWSSGMR-MNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 203 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
.+++.|+. ...+.+||..+++....-. ......-.+++.. ++.+++.|+.+ ..+.+||+.+++-..
T Consensus 145 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~ 212 (402)
T 2aq5_A 145 NVLLSAGC------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVVA 212 (402)
T ss_dssp TEEEEEET------TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEEE
T ss_pred CEEEEEcC------CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCceee
Confidence 46666643 3568999998876543211 1111111222222 55666777654 468999998876432
Q ss_pred cC--CCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 281 LP--SMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 281 ~~--~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
.- .....+.......-++++++.|... ..-..+.+||+.+..- .....+....... .++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~--------------~~~ 274 (402)
T 2aq5_A 213 EKDRPHEGTRPVHAVFVSEGKILTTGFSR----MSERQVALWDTKHLEEPLSLQELDTSSGVL--------------LPF 274 (402)
T ss_dssp EEECSSCSSSCCEEEECSTTEEEEEEECT----TCCEEEEEEETTBCSSCSEEEECCCCSSCE--------------EEE
T ss_pred eeccCCCCCcceEEEEcCCCcEEEEeccC----CCCceEEEEcCccccCCceEEeccCCCcee--------------EEE
Confidence 21 1111112222223477877776311 1124688999876431 0000111111111 233
Q ss_pred EE-C-CEEEEEEcCCCeEEEEeCCCCc--eEEeccC
Q 012701 358 VV-N-NELYAADYADMEVRKYDKERRL--WFTIGRL 389 (458)
Q Consensus 358 ~~-~-~~lyv~gg~~~~v~~yd~~~~~--W~~v~~l 389 (458)
.. + ..|++.|..++.|.+||..+.+ -..+...
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~ 310 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF 310 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc
Confidence 33 3 4566677778899999998876 4455433
No 194
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.30 E-value=1.5 Score=40.78 Aligned_cols=193 Identities=8% Similarity=0.068 Sum_probs=94.5
Q ss_pred EEEEeccceEEEEecC-CCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCC-ceeeCCC
Q 012701 159 VYFSCHLLEWEAFDPI-RRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTN-SWSSGMR 235 (458)
Q Consensus 159 l~~~~~~~~~~~yDp~-~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~ 235 (458)
+++......+.+||+. ...|..-.+.+.. ...+.. ++.||+.. ....+++||+... .|.....
T Consensus 110 l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~-------~~~~~~~~g~l~vgt-------~~~~l~~~d~~g~~~~~~~~~ 175 (330)
T 3hxj_A 110 LYVTSMDGHLYAINTDGTEKWRFKTKKAIY-------ATPIVSEDGTIYVGS-------NDNYLYAINPDGTEKWRFKTN 175 (330)
T ss_dssp EEEECTTSEEEEECTTSCEEEEEECSSCCC-------SCCEECTTSCEEEEC-------TTSEEEEECTTSCEEEEEECS
T ss_pred EEEEecCCEEEEEcCCCCEEEEEcCCCcee-------eeeEEcCCCEEEEEc-------CCCEEEEECCCCCEeEEEecC
Confidence 4444444568889988 3356543321110 112333 56777643 2346889998722 2554321
Q ss_pred CCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCC-CcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCc
Q 012701 236 MNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSET-QTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSK 312 (458)
Q Consensus 236 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~ 312 (458)
... ..+.+. -++.||+.. ..+..||... ..|+..... .. ..+.+.. +|.||+... .
T Consensus 176 --~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~-~----- 234 (330)
T 3hxj_A 176 --DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL-D----- 234 (330)
T ss_dssp --SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET-T-----
T ss_pred --CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC-C-----
Confidence 111 122233 366777763 4578888432 247654322 11 1222333 567877521 1
Q ss_pred ccceEEEEECCCCc-eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCC-ceEEeccC
Q 012701 313 VLTCGEEYDLETET-WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERR-LWFTIGRL 389 (458)
Q Consensus 313 ~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~-~W~~v~~l 389 (458)
..+.+||+.... |..-.. ..... ..++. ++.||+.. ..+.+.+||+..+ .|..- +
T Consensus 235 --~gl~~~~~~g~~~~~~~~~--~~~~~---------------~~~~~~~g~l~v~t-~~ggl~~~d~~g~~~~~~~--~ 292 (330)
T 3hxj_A 235 --GHLYAINPDGTEKWRFKTG--KRIES---------------SPVIGNTDTIYFGS-YDGHLYAINPDGTEKWNFE--T 292 (330)
T ss_dssp --TEEEEECTTSCEEEEEECS--SCCCS---------------CCEECTTSCEEEEC-TTCEEEEECTTSCEEEEEE--C
T ss_pred --CeEEEECCCCCEeEEeeCC--CCccc---------------cceEcCCCeEEEec-CCCCEEEECCCCcEEEEEE--c
Confidence 247778865443 543221 11111 22333 67788753 4457999997433 35432 2
Q ss_pred CCccCCCCcccEEEEE-eCCEEEEEc
Q 012701 390 PERANSMNGWGLAFRA-CGDRLIVIG 414 (458)
Q Consensus 390 p~~~~~~~~~~~a~~~-~~~~lyv~G 414 (458)
+.... .+++. .+++||+.+
T Consensus 293 ~~~~~------~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 293 GSWII------ATPVIDENGTIYFGT 312 (330)
T ss_dssp SSCCC------SCCEECTTCCEEEEC
T ss_pred CCccc------cceEEcCCCEEEEEc
Confidence 32211 12333 577887744
No 195
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.26 E-value=2.7 Score=45.26 Aligned_cols=145 Identities=9% Similarity=0.048 Sum_probs=87.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.||+.-. ..+.|+++++....-+.+. .+..|+ ++++ .++.||+.--. ....++++++...
T Consensus 482 ~~~LY~tD~------~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g-----~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 482 HSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLNGV 547 (791)
T ss_dssp TTEEEEEET------TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECS-----SSCEEEEEETTSC
T ss_pred CCcEEEEec------CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCC-----CCCeEEEEecCCC
Confidence 679998853 3457899998766544442 233332 3444 26899998411 1257899998765
Q ss_pred cEEEcCCCCCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 277 TWKVLPSMKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
.-+.+..- ......++.+ +++||+.-. ....|+++|+....-..+..-.... ..+
T Consensus 548 ~~~~lv~~--~l~~P~GLavD~~~~~LYwaD~-------~~~~I~~~d~dG~~~~~v~~~~~~l-------------~~P 605 (791)
T 3m0c_C 548 DIYSLVTE--NIQWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRL-------------AHP 605 (791)
T ss_dssp CEEEEECS--SCSCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEEECTTTT-------------SSE
T ss_pred ceEEEEeC--CCCCceEEEEecCCCeEEEEeC-------CCCcEEEEecCCCceEEEecCCCcc-------------CCC
Confidence 44443221 1123333333 689999832 2357899998754433332110000 011
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCCCC
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
.++++.++.||+.......|+++|..++
T Consensus 606 ~glav~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 606 FSLAVFEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred CEEEEeCCEEEEEECCCCEEEEEeCCCC
Confidence 2678889999999988899999997665
No 196
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.24 E-value=2.6 Score=39.73 Aligned_cols=66 Identities=8% Similarity=-0.048 Sum_probs=42.1
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEE
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRK 375 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~ 375 (458)
++++++.|+.+ ..+..||+.+.+-..+........-. +++.. ++.+++.|+.++.|.+
T Consensus 138 ~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~~~~~~~~i~--------------~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 138 NTEYFIWADNR-------GTIGFQSYEDDSQYIVHSAKSDVEYS--------------SGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp -CCEEEEEETT-------CCEEEEESSSSCEEEEECCCSSCCCC--------------EEEECTTSCEEEEECTTSCEEE
T ss_pred CCCEEEEEeCC-------CcEEEEECCCCcEEEEEecCCCCceE--------------EEEECCCCCEEEEEcCCCEEEE
Confidence 56777777765 35788999887654332211111111 33333 6788888889999999
Q ss_pred EeCCCCce
Q 012701 376 YDKERRLW 383 (458)
Q Consensus 376 yd~~~~~W 383 (458)
||..+.+-
T Consensus 197 wd~~~~~~ 204 (343)
T 3lrv_A 197 YNLSSPDQ 204 (343)
T ss_dssp EESSCTTS
T ss_pred EECCCCCC
Confidence 99988753
No 197
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=94.12 E-value=6.1 Score=41.28 Aligned_cols=150 Identities=10% Similarity=-0.047 Sum_probs=79.8
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCC-cEEEcCCCCCCC----
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQ-TWKVLPSMKNPR---- 288 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~~p~~r---- 288 (458)
....+++||..+++-..+............+.+ +++.++++..+.. .....+..+|+.++ ..+.+.......
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 346799999998876655432111122222322 4443333333322 22457899999998 666543211111
Q ss_pred cceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--C-CEE
Q 012701 289 KMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--N-NEL 363 (458)
Q Consensus 289 ~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~-~~l 363 (458)
.......- +|++++.+..+ ....++.+|........+..-.... . .+... + +.|
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~-----g~~~l~~~~~~~~~~~~l~~~~~~v--~--------------~~~~~spdg~~l 370 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRD-----GWNHLYLYDTTGRLIRQVTKGEWEV--T--------------NFAGFDPKGTRL 370 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTT-----SSCEEEEEETTSCEEEECCCSSSCE--E--------------EEEEECTTSSEE
T ss_pred cCCceeecCCCCEEEEEEccC-----CccEEEEEECCCCEEEecCCCCeEE--E--------------eeeEEcCCCCEE
Confidence 01112233 78866665433 1356888887777777664311100 0 11222 3 357
Q ss_pred EEEEcCCC----eEEEEeCCCCceEEec
Q 012701 364 YAADYADM----EVRKYDKERRLWFTIG 387 (458)
Q Consensus 364 yv~gg~~~----~v~~yd~~~~~W~~v~ 387 (458)
|+.+...+ .|+.+|..+...+.+.
T Consensus 371 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 371 YFESTEASPLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp EEEESSSCTTCBEEEEEETTCCCCEESC
T ss_pred EEEecCCCCceEEEEEEEcCCCCceecc
Confidence 76665443 8899999887766664
No 198
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=94.12 E-value=1.5 Score=40.93 Aligned_cols=143 Identities=11% Similarity=0.104 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCCceeeEE-------EeCCEEEEEeccCCCCCccCeEEEEe
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSA-------SLGEIAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~-------~~~~~lyv~GG~~~~~~~~~~v~~yd 272 (458)
+.+++.|+. ...+.+||..++. -..+..... .-.+.. .-++.+++.|+.+ ..+.+||
T Consensus 80 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd 145 (357)
T 3i2n_A 80 QRYLATGDF------GGNLHIWNLEAPEMPVYSVKGHKE--IINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWD 145 (357)
T ss_dssp TCCEEEEET------TSCEEEECTTSCSSCSEEECCCSS--CEEEEEEESGGGCC-CCCEEEEEETT------SCEEEEC
T ss_pred CceEEEecC------CCeEEEEeCCCCCccEEEEEeccc--ceEEEeeccccccCCCccEEEEEeCC------CeEEEEe
Confidence 355556543 3468889888765 122211111 111111 1245566677654 3588899
Q ss_pred CCCCc--EEEcCCCCC--CCcceeEEE-----ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCC
Q 012701 273 SETQT--WKVLPSMKN--PRKMCSGVF-----MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 343 (458)
Q Consensus 273 ~~t~~--W~~~~~~p~--~r~~~~~~~-----~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~ 343 (458)
..+.. ...+..... .+...+.+. -++++++.|+.+ ..+..||+.+.+-........ .-.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~~~~~--~v~--- 213 (357)
T 3i2n_A 146 PRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-------GDIKLFDLRNMALRWETNIKN--GVC--- 213 (357)
T ss_dssp TTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT-------SEEEEEETTTTEEEEEEECSS--CEE---
T ss_pred CCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC-------CeEEEEECccCceeeecCCCC--ceE---
Confidence 88764 333322221 112222221 467777777654 368899998876432211111 111
Q ss_pred CCCCCCcCCCCEEEEE----CCEEEEEEcCCCeEEEEeCCCC
Q 012701 344 TEMPASAEAPPLVAVV----NNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 344 ~~~~~~~~~~~~~~~~----~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
.++.. ++..++.++..+.|.+||..+.
T Consensus 214 -----------~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 214 -----------SLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp -----------EEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred -----------EEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 23333 5677788888899999998653
No 199
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.05 E-value=2.3 Score=40.49 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=77.4
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
...++++|+.+++-+.+..-+. ...+....- +++.+++............++.+|..+...+.+............+.
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFW 245 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEE
T ss_pred cceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceE
Confidence 3679999999887655532211 122222233 34433333222211224689999998887776654322111111222
Q ss_pred -ECCE-EEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC------CCCCCCCCCCCCCcCCCCEEEEECC-EEEEE
Q 012701 296 -MDGK-FYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA------RGGAARGTEMPASAEAPPLVAVVNN-ELYAA 366 (458)
Q Consensus 296 -~~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~------r~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~ 366 (458)
-+|+ |+++....+ .....++.||+.+.+-+.+..++.. ..+ ....-+| .|++.
T Consensus 246 spdg~~l~~~~~~~~---~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~---------------~~~spdg~~l~~~ 307 (388)
T 3pe7_A 246 VPDGSALVYVSYLKG---SPDRFIYSADPETLENRQLTSMPACSHLMSNYDG---------------SLMVGDGSDAPVD 307 (388)
T ss_dssp CTTSSCEEEEEEETT---CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS---------------SEEEEEECCC---
T ss_pred CCCCCEEEEEecCCC---CCcceEEEEecCCCceEEEEcCCCceeeeecCCC---------------CeEccCCCcceeE
Confidence 2665 444332221 1123589999999887666443320 001 1122233 33322
Q ss_pred E--------cCCCeEEEEeCCCCceEEecc
Q 012701 367 D--------YADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 367 g--------g~~~~v~~yd~~~~~W~~v~~ 388 (458)
. .....|+++|+.+++-+.+..
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 308 VQDDSGYKIENDPFLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEE
T ss_pred eeeccccccCCCCEEEEEeccCCceEEecc
Confidence 1 234689999999888777653
No 200
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.96 E-value=5.5 Score=41.85 Aligned_cols=103 Identities=6% Similarity=-0.056 Sum_probs=53.2
Q ss_pred eEEEEeCCC-CcEEEcCCCC-CCCc-ceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC-C---CC
Q 012701 267 SAEMYNSET-QTWKVLPSMK-NPRK-MCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA-R---GG 339 (458)
Q Consensus 267 ~v~~yd~~t-~~W~~~~~~p-~~r~-~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~-r---~~ 339 (458)
.++++|..+ ++-..+.... .... ..... -||+..+++.... ......++.+|+.+.+...+...... . ..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788889988 7655443221 1111 11222 4555444443321 12345789999999887655321111 0 00
Q ss_pred CCCCCCCCCCcCCCCEEEEECCEEEEEEcCC--CeEEEEeCCCCceEEec
Q 012701 340 AARGTEMPASAEAPPLVAVVNNELYAADYAD--MEVRKYDKERRLWFTIG 387 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~--~~v~~yd~~~~~W~~v~ 387 (458)
. ....-++++++.+... ..++.+|...+ ...+.
T Consensus 341 ~--------------~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~ 375 (741)
T 2ecf_A 341 S--------------LRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALT 375 (741)
T ss_dssp C--------------CEECTTSCEEEEECTTSSCEEEEECSSSC-EEESC
T ss_pred c--------------eEECCCCeEEEEecCCCccEEEEEcCCCC-eeeee
Confidence 1 1222366666665444 47888887666 55553
No 201
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=93.93 E-value=0.016 Score=60.15 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCCCCChhHHHHhhcccC-cccchhhhhccHhHHHH
Q 012701 104 SLIQPIGRDNSISCLIRCS-RSDYGSIASLNQSFRSL 139 (458)
Q Consensus 104 ~l~~~LP~dl~~~iL~rlp-~~~~~~l~~Vck~wr~l 139 (458)
..|..||+|++..||.+|| ..+..+++.|||+|+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 4688999999999999999 88999999999999988
No 202
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.89 E-value=1.5 Score=41.81 Aligned_cols=158 Identities=6% Similarity=0.034 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe----CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL----GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.+++.|+ ....+.+||..+..-...-..+.+. ...... ++.++++|+.+ ..+.+||..+.
T Consensus 111 ~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~ 176 (408)
T 4a11_B 111 DTGMFTSSS------FDKTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSG 176 (408)
T ss_dssp CTTCEEEEE------TTSEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS------SSEEEEESSSS
T ss_pred CCcEEEEEe------CCCeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCc
Confidence 444555554 3356889999887654332222221 122221 33466777654 45888998876
Q ss_pred cEEEcCCCCCCCcce-eEEEE-CCE-EEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 277 TWKVLPSMKNPRKMC-SGVFM-DGK-FYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~-~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
.-.. .+....... +.++. +++ +++.|+.+ ..+..||+.+.. ...+............ ..... ..
T Consensus 177 ~~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 245 (408)
T 4a11_B 177 SCSH--ILQGHRQEILAVSWSPRYDYILATASAD-------SRVKLWDVRRASGCLITLDQHNGKKSQAVE-SANTA-HN 245 (408)
T ss_dssp CCCE--EECCCCSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTCSSCCSEECCTTTTCSCCCTT-TSSCS-CS
T ss_pred ceee--eecCCCCcEEEEEECCCCCcEEEEEcCC-------CcEEEEECCCCCcccccccccccccceeec-ccccc-cc
Confidence 4211 111111112 22222 344 67777655 247889987653 2222110000000000 00000 00
Q ss_pred CCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 352 APPLVAVV--NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 352 ~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
.....+.. ++..++.++.++.+.+||..+..-
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 00012222 566777788888999999987653
No 203
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.82 E-value=4.2 Score=37.84 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=18.9
Q ss_pred CEEEEEEcCCCeEEEEeCCCCc
Q 012701 361 NELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+.+++.|+..+.|.+||..+.+
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSS
T ss_pred CcEEEEEecCCcEEEEECCCCC
Confidence 7888888888999999998764
No 204
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=93.76 E-value=3 Score=43.26 Aligned_cols=190 Identities=12% Similarity=-0.061 Sum_probs=101.1
Q ss_pred ceEEEEecCC------CcEEeCC-CCCCCccccccCceEEEeCCEEEEEcCCCCCcC--ccceEEEEEcC-CC---ceee
Q 012701 166 LEWEAFDPIR------RRWMHLP-RMTSNECFMCSDKESLAVGTELLVFGRELTAHH--ISHVIYRYSIL-TN---SWSS 232 (458)
Q Consensus 166 ~~~~~yDp~~------~~W~~l~-~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~--~~~~v~~yd~~-t~---~W~~ 232 (458)
..++.+|..+ +....+. .-.. .. ......-+++.+++........ ....++++|.. ++ ..+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR---FV--TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS---EE--CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC---cc--cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 4678888887 5655554 2111 10 0111223454333332211100 23579999998 56 3333
Q ss_pred CCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc-------ceeEEEE-CCEEEEE
Q 012701 233 GMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK-------MCSGVFM-DGKFYVI 303 (458)
Q Consensus 233 ~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-------~~~~~~~-~g~lyv~ 303 (458)
+..-. .......+. -++++|+.+..++ ...++.+|+.+++++.+........ ....++. ++++++.
T Consensus 236 l~~~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 236 LLGGP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp EEEET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE
T ss_pred eCCCC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE
Confidence 32111 111122222 2566777765442 2479999999999988764322110 1223333 6777776
Q ss_pred ccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE-EEECCEEEEEEcCC---CeEEEEeCC
Q 012701 304 GGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV-AVVNNELYAADYAD---MEVRKYDKE 379 (458)
Q Consensus 304 GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~gg~~---~~v~~yd~~ 379 (458)
+.. ....++.+|+.++....+... .... ..+ ..-++.+++..... ..++.+|..
T Consensus 311 ~~~------~~~~l~~~d~~~~~~~~l~~~---~~~~-------------~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~ 368 (662)
T 3azo_A 311 HGK------GAAVLGILDPESGELVDAAGP---WTEW-------------AATLTVSGTRAVGVAASPRTAYEVVELDTV 368 (662)
T ss_dssp EBS------SSCEEEEEETTTTEEEECCSS---CCEE-------------EEEEEEETTEEEEEEEETTEEEEEEEEETT
T ss_pred EEc------CccEEEEEECCCCcEEEecCC---CCeE-------------EEEEecCCCEEEEEEcCCCCCCEEEEEECC
Confidence 543 234688889988877766421 1111 022 33456666664433 378899998
Q ss_pred CCceEEec
Q 012701 380 RRLWFTIG 387 (458)
Q Consensus 380 ~~~W~~v~ 387 (458)
+++.+.+.
T Consensus 369 ~g~~~~l~ 376 (662)
T 3azo_A 369 TGRARTIG 376 (662)
T ss_dssp TCCEEEEE
T ss_pred CCceEEee
Confidence 88887774
No 205
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.75 E-value=3.1 Score=39.94 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=94.2
Q ss_pred cceEEEEEcCCCceeeCC--CCCCCCce-eeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCC
Q 012701 217 SHVIYRYSILTNSWSSGM--RMNAPRCL-FGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPR 288 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~--~~p~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r 288 (458)
...+.+||..+++-...- ..+..... ..+..+ ++.+++.|+.+ ..+.+||..... -..+.... .
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D------~~v~~wd~~~~~~~~~~~~~h~--~ 250 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD------TTVRLWDLRITSRAVRTYHGHE--G 250 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT------SCEEEEETTTTCCCCEEECCCS--S
T ss_pred CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC------CeEEEEECCCCCcceEEECCcC--C
Confidence 356888999887653321 12221111 112222 56788888876 357888886321 11111100 1
Q ss_pred cceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEc-CCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEE
Q 012701 289 KMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI-PNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYA 365 (458)
Q Consensus 289 ~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i-~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv 365 (458)
.-.++++ -+++.++.|+.+ ..+..||+.+..-... ...+...... .+ .-.+++. .++++++
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D-------~~i~lwd~~~~~~~~~~~~~~~~~~~~-----~~----~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDD-------GTCRLFDMRTGHQLQVYNREPDRNDNE-----LP----IVTSVAFSISGRLLF 314 (380)
T ss_dssp CCCEEEECTTSSEEEEECSS-------SCEEEEETTTTEEEEEECCCCSSSCCS-----SC----SCSEEEECSSSSEEE
T ss_pred CeEEEEEecCCCeEEEEcCC-------CeEEEEECCCCcEEEEecccccccccc-----cC----ceEEEEECCCCCEEE
Confidence 1112222 267777777765 3578899987653322 1111110000 00 0012333 3678888
Q ss_pred EEcCCCeEEEEeCCCCceE-EeccCCCccCCCCcccEEE-EEeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 366 ADYADMEVRKYDKERRLWF-TIGRLPERANSMNGWGLAF-RACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 366 ~gg~~~~v~~yd~~~~~W~-~v~~lp~~~~~~~~~~~a~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.|+.++.|.+||..+.+-. .+..+..... +.-.++ ...++..++.|+.+. .+.+|++..
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~---~~v~~l~~s~dg~~l~sgs~D~------~i~iW~~~~ 375 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHE---GRISCLGLSSDGSALCTGSWDK------NLKIWAFSG 375 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCC---CCCCEEEECSSSSEEEEECTTS------CEEEEECCS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCC---CceEEEEECCCCCEEEEeeCCC------CEEEEecCC
Confidence 8888899999998776543 2322222111 111222 234677888887643 467787754
No 206
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=93.64 E-value=4.5 Score=37.55 Aligned_cols=150 Identities=12% Similarity=0.023 Sum_probs=82.4
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.||+..- ..+.|++||+.++. ......+ ..-++.+.. +++|||...... ...+..||+.+++.+
T Consensus 42 ~g~lyv~d~------~~~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~~----~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 42 DGTIFVTNH------EVGEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNAD----SIPVVSLVKSDGTVE 108 (306)
T ss_dssp TSCEEEEET------TTTEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECTT----SCEEEEEECTTSCEE
T ss_pred CCCEEEEeC------CCCeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccCC----cceEEEEcCCCCeEE
Confidence 566888752 23568999987642 2211111 122333333 567888754221 135888999998887
Q ss_pred EcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCc---eEEcCCCC--CCCCCCCCCCCCCCCcCCC
Q 012701 280 VLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETET---WTEIPNMS--PARGGAARGTEMPASAEAP 353 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~---W~~i~~~p--~~r~~~~~~~~~~~~~~~~ 353 (458)
.+...+..+.....+. .++.+|+.-. ....++++|+.+.. |..-..+. ...... ..+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~-------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~----------~~p 171 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADS-------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF----------PAA 171 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEET-------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS----------CSE
T ss_pred EEEeCCCccccCcccccCCCcEEEEEC-------CCCeEEEEeCCCCcEeEEEECCccccccccCCC----------CcC
Confidence 7655554444333332 3556777532 12478999987642 22111110 000000 111
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCCC
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
..+..-++.||+.....+.|++||...
T Consensus 172 ngis~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 172 NGLKRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEEBCT
T ss_pred CCcCcCCCEEEEEeCCCCEEEEEEeCC
Confidence 234334568999988889999999875
No 207
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.54 E-value=0.51 Score=46.55 Aligned_cols=107 Identities=6% Similarity=-0.039 Sum_probs=60.9
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC-CCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK-NPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
+.+++.|+.++ .+.+||..++.-..+-... ....-.++++. ++.+++.|+.+ ..|-+||+.++.
T Consensus 132 ~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~~~~ 198 (435)
T 4e54_B 132 PSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-------GTTRLQDFKGNI 198 (435)
T ss_dssp TTCEEEEETTS------CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-------SCEEEEETTSCE
T ss_pred CCEEEEEeCCC------EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-------CEEEEeeccCCc
Confidence 34566777653 4788888776533222211 11222233332 56677777765 347789998876
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
...+.......... .+++. -++.+++.|+..+.|.+||...+.
T Consensus 199 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~ 242 (435)
T 4e54_B 199 LRVFASSDTINIWF-------------CSLDVSASSRMVVTGDNVGNVILLNMDGKE 242 (435)
T ss_dssp EEEEECCSSCSCCC-------------CCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred eeEEeccCCCCccE-------------EEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence 65443211111110 02333 367788888888999999987653
No 208
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.53 E-value=2.4 Score=42.11 Aligned_cols=194 Identities=13% Similarity=0.058 Sum_probs=95.6
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCCCcCccceEEEEEcCCCcee---eCCCCCCCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELTAHHISHVIYRYSILTNSWS---SGMRMNAPR 240 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r 240 (458)
..+..+|+.+++...+...... ...+++ ++.||+...... .....++.++... .+. .++.+..|
T Consensus 162 ~~I~~id~~~g~v~~~~~~~~~-------P~giavd~dG~lyVad~~~~--~~~~gv~~~~~~~-~~~~~~~~~~~~~P- 230 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKTTNIGQ-------CADVNFTLNGDMVVVDDQSS--DTNTGIYLFTRAS-GFTERLSLCNARGA- 230 (433)
T ss_dssp SCEEEEETTTTEEEEECCCCSC-------EEEEEECTTCCEEEEECCSC--TTSEEEEEECGGG-TTCCEEEEEECSSB-
T ss_pred CCEEEEECCCCEEEEeecCCCC-------ccEEEECCCCCEEEEcCCCC--cccceEEEEECCC-CeeccccccccCCC-
Confidence 4678899988877666441111 112333 455888853211 1223456666543 232 22222222
Q ss_pred ceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE-EEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCcccc
Q 012701 241 CLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW-KVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLT 315 (458)
Q Consensus 241 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~ 315 (458)
.+.++. ++.||+.-. ....+++||+.+++- +.+............++. ++ .|||.-- ...
T Consensus 231 --~giavd~~~G~lyv~d~------~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~-------~~~ 295 (433)
T 4hw6_A 231 --KTCAVHPQNGKIYYTRY------HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN-------GKH 295 (433)
T ss_dssp --CCCEECTTTCCEEECBT------TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET-------TTT
T ss_pred --CEEEEeCCCCeEEEEEC------CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC-------CCC
Confidence 233333 578888732 135799999987765 332211111111223332 44 5998732 234
Q ss_pred eEEEEECC--CCceE---EcCCCCCCCCCCCCCCCCCCCcCCCCEEEE----------ECCEEEEEEcCCCeEEEEeCCC
Q 012701 316 CGEEYDLE--TETWT---EIPNMSPARGGAARGTEMPASAEAPPLVAV----------VNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 316 ~v~~yd~~--~~~W~---~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~----------~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
.|.++|+. +.... .+...+ ...+...|....+....|..+++ -++.||+.......|.++++ +
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred EEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence 67886654 33321 111100 00111111111122223334665 35689999988899999997 4
Q ss_pred CceEEec
Q 012701 381 RLWFTIG 387 (458)
Q Consensus 381 ~~W~~v~ 387 (458)
+....+.
T Consensus 374 G~v~t~~ 380 (433)
T 4hw6_A 374 GRVTTYA 380 (433)
T ss_dssp SEEEEEE
T ss_pred CCEEEEE
Confidence 4565554
No 209
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.50 E-value=2.5 Score=39.40 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=88.0
Q ss_pred EeccceEEEEecCCCcEEeCCCCCCCccccccCceEE---EeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC
Q 012701 162 SCHLLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESL---AVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA 238 (458)
Q Consensus 162 ~~~~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~---~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~ 238 (458)
......+..||..+.+...+.....+. ..+. ..++.+++.|+. ...+.+||..+++-.. .+..
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~--~~~~ 169 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPV------KTIHWIKAPNYSCVMTGSW------DKTLKFWDTRSSNPMM--VLQL 169 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCE------EEEEEEECSSCEEEEEEET------TSEEEEECSSCSSCSE--EEEC
T ss_pred EcCCCcEEEEEcCCCCceeeccccCce------EEEEEEeCCCCCEEEEccC------CCcEEEEECCCCcEEE--EEec
Confidence 333456777888777655432211111 1111 125566666643 3568899988764221 1112
Q ss_pred CCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCCcceeEEEECC----EEEEEccccCCCCc
Q 012701 239 PRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFMDG----KFYVIGGIGGSDSK 312 (458)
Q Consensus 239 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g----~lyv~GG~~~~~~~ 312 (458)
.....+.......+++.++ + ..+.+||..... +..+............+..+. ..++.|+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~-~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 237 (368)
T 3mmy_A 170 PERCYCADVIYPMAVVATA-E------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE----- 237 (368)
T ss_dssp SSCEEEEEEETTEEEEEEG-G------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT-----
T ss_pred CCCceEEEecCCeeEEEeC-C------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC-----
Confidence 2223334444555554433 2 457778877653 444433222222222222222 235666544
Q ss_pred ccceEEEEECCCCce----EEcCC---CCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 313 VLTCGEEYDLETETW----TEIPN---MSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 313 ~~~~v~~yd~~~~~W----~~i~~---~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
..+.+||.....- ..+.. ........ +.. ..-..++.. ++.+++.|+.++.|.+||..+.+-
T Consensus 238 --g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 238 --GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP--QDI-----YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK 307 (368)
T ss_dssp --SEEEEEESSCSCHHHHSEEEECSEEC----CCC--EEE-----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred --CcEEEEecCCCCccccceeeeeeeccccccccc--ccc-----cceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence 3577788876521 01100 00000000 000 000022222 567778888889999999987643
No 210
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=93.49 E-value=5.2 Score=37.76 Aligned_cols=169 Identities=17% Similarity=0.034 Sum_probs=95.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc---eeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS---WSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
++.||+.-- ..+.|+++++.+.. +.....+..| .+.++ .++.||+.-.. ...++++++..
T Consensus 46 ~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~d~~------~~~I~~~~~dG 110 (318)
T 3sov_A 46 HGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWTDSE------TNRIEVSNLDG 110 (318)
T ss_dssp GTEEEEEET------TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEEETT------TTEEEEEETTS
T ss_pred CCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEEECC------CCEEEEEECCC
Confidence 578998852 34578999987652 2211222222 23344 37899998432 35788999876
Q ss_pred CcEEEcC--CCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 276 QTWKVLP--SMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 276 ~~W~~~~--~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
..-+.+. .+..| ...++. +|.||+.--. ....|+++++....-+.+..- .. .
T Consensus 111 ~~~~~l~~~~~~~P---~giavdp~~g~ly~td~~------~~~~I~r~~~dG~~~~~~~~~--~l-------------~ 166 (318)
T 3sov_A 111 SLRKVLFWQELDQP---RAIALDPSSGFMYWTDWG------EVPKIERAGMDGSSRFIIINS--EI-------------Y 166 (318)
T ss_dssp CSCEEEECSSCSSE---EEEEEEGGGTEEEEEECS------SSCEEEEEETTSCSCEEEECS--SC-------------S
T ss_pred CcEEEEEeCCCCCc---cEEEEeCCCCEEEEEecC------CCCEEEEEEcCCCCeEEEEEC--CC-------------C
Confidence 5433332 22222 123332 5889987311 124688998875432222110 00 1
Q ss_pred CCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 352 APPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 352 ~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
.|..+++- +++||+.......|+++|.....-+.+..-... +-.++++.++.||+.-
T Consensus 167 ~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~------~P~glav~~~~lywtd 225 (318)
T 3sov_A 167 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLP------HPFALTLFEDILYWTD 225 (318)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCS------CEEEEEEETTEEEEEE
T ss_pred CccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCC------CceEEEEeCCEEEEEe
Confidence 12255654 789999998889999999986544444321111 1234555688898874
No 211
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=93.40 E-value=2.2 Score=39.50 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
++.+++.|+. ...+..++.......................-.+..++.|+.+ ..+.+||.....-..
T Consensus 97 dg~~l~s~~~------d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 97 DGQFALSGSW------DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD------KTIKLWNTLGVCKYT 164 (340)
T ss_dssp TSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEEEE
T ss_pred CCCEEEEEcc------cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC------CeEEEEEeCCCceEE
Confidence 4555555543 3457778877765543322222222222222244556666654 346677776543222
Q ss_pred cCCCCCCCcceeEEEE----CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE
Q 012701 281 LPSMKNPRKMCSGVFM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV 356 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~ 356 (458)
..... .......+.+ .+.+++.|+.+ ..+..||+.+.+....-. ..... -.++
T Consensus 165 ~~~~~-~~~~v~~~~~~~~~~~~~~~s~~~d-------~~i~i~d~~~~~~~~~~~---~h~~~------------v~~~ 221 (340)
T 4aow_A 165 VQDES-HSEWVSCVRFSPNSSNPIIVSCGWD-------KLVKVWNLANCKLKTNHI---GHTGY------------LNTV 221 (340)
T ss_dssp ECSSS-CSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTTEEEEEEC---CCSSC------------EEEE
T ss_pred EEecc-ccCcccceEEccCCCCcEEEEEcCC-------CEEEEEECCCCceeeEec---CCCCc------------EEEE
Confidence 22111 1111122221 23455666544 347789988765432211 01111 0022
Q ss_pred EEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 357 AVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 357 ~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+.. ++.+++.|+.++.|.+||..+..
T Consensus 222 ~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 222 TVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp EECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred EECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 222 56788888888999999987754
No 212
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.28 E-value=6.3 Score=38.49 Aligned_cols=146 Identities=8% Similarity=0.015 Sum_probs=85.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
++.||+.-. ..+.|+++++....-+.+. .+..|+ +.++ .++.||+.--.. ...++++++...
T Consensus 170 ~~~lY~~d~------~~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~-----~~~I~~~~~dG~ 235 (400)
T 3p5b_L 170 HSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT-----PAKIKKGGLNGV 235 (400)
T ss_dssp TTEEEEEET------TTTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSS-----SCCEEEEETTSC
T ss_pred CCceEEEEC------CCCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCC-----CCEEEEEeCCCC
Confidence 789999853 2357889988766544432 233332 3344 368999884211 256888988754
Q ss_pred cEEEcCCCCCCCccee-EEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCC
Q 012701 277 TWKVLPSMKNPRKMCS-GVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAP 353 (458)
Q Consensus 277 ~W~~~~~~p~~r~~~~-~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~ 353 (458)
.=+.+.. ....... .++- +++||+.-. ....|+++|+....-+.+...+... ..|
T Consensus 236 ~~~~~~~--~~l~~P~glavd~~~~~lY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~l-------------~~P 293 (400)
T 3p5b_L 236 DIYSLVT--ENIQWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRL-------------AHP 293 (400)
T ss_dssp SCEEEEC--SSCSCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCCCEEEEECSSTT-------------SSE
T ss_pred ccEEEEE--CCCCceEEEEEEeCCCEEEEEEC-------CCCEEEEEeCCCCccEEEEeCCCCC-------------CCC
Confidence 3333211 1112223 3333 689999832 2357999998754433332111000 112
Q ss_pred CEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 354 PLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 354 ~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.++++.++.||+.......|+++|+.+++
T Consensus 294 ~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 294 FSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 26788899999999888899999976553
No 213
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.28 E-value=0.51 Score=53.31 Aligned_cols=147 Identities=12% Similarity=0.092 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
++..++.|+. ...+.+||..++........ ...-...+...+..++.|+.+ ..+.+||..+++-..
T Consensus 1014 dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~ 1079 (1249)
T 3sfz_A 1014 DGKTLISSSE------DSVIQVWNWQTGDYVFLQAH--QETVKDFRLLQDSRLLSWSFD------GTVKVWNVITGRIER 1079 (1249)
T ss_dssp SSSCEEEECS------SSBEEEEETTTTEEECCBCC--SSCEEEEEECSSSEEEEEESS------SEEEEEETTTTCCCE
T ss_pred CCCEEEEEcC------CCEEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEECC------CcEEEEECCCCceeE
Confidence 4555556543 35689999998876644321 122223333334445666654 468889998775321
Q ss_pred cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-E
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-V 359 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~ 359 (458)
.-..........+..-++++++.|+.+ ..+.+||..+.+- +..+.. ..+. -.+++. -
T Consensus 1080 ~~~~~~~~v~~~~~s~d~~~l~s~s~d-------~~v~iwd~~~~~~--~~~l~~-h~~~------------v~~~~~s~ 1137 (1249)
T 3sfz_A 1080 DFTCHQGTVLSCAISSDATKFSSTSAD-------KTAKIWSFDLLSP--LHELKG-HNGC------------VRCSAFSL 1137 (1249)
T ss_dssp EEECCSSCCCCEEECSSSSSCEEECCS-------SCCCEECSSSSSC--SBCCCC-CSSC------------EEEEEECS
T ss_pred EEcccCCcEEEEEECCCCCEEEEEcCC-------CcEEEEECCCcce--eeeecc-CCCc------------EEEEEECC
Confidence 111111111222223467777777655 2356788766531 111111 1111 002222 2
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCce
Q 012701 360 NNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
++++++.|+.++.|.+||..+.+-
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCce
Confidence 677888888888999999987653
No 214
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=93.19 E-value=4.2 Score=35.92 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=80.8
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceee--C----CCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCe
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSS--G----MRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSS 267 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 267 (458)
+++...+++|+|-|. .+|+++.....+.. + +.+|.. .. ++... ++++|++-| +.
T Consensus 28 Ai~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG--------~~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG--------RK 89 (207)
T ss_dssp EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET--------TE
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEcc--------CE
Confidence 455679999999654 46777654433211 1 233421 11 22222 589999966 45
Q ss_pred EEEEeCCCCc---EEEcCCCCCCC--cceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCC
Q 012701 268 AEMYNSETQT---WKVLPSMKNPR--KMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGG 339 (458)
Q Consensus 268 v~~yd~~t~~---W~~~~~~p~~r--~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~ 339 (458)
.++|+..+-. =+.+..+..|. ..-.+|+. ++++|++-|. ..++||..+++=. +.-|..-..
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d--~gyPr~i~~ 158 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMD--KDYPRLIEE 158 (207)
T ss_dssp EEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEEC--SSCCCBHHH
T ss_pred EEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC---------EEEEEeCcCcccc--CCCCccHHH
Confidence 6777643211 12233222222 22334443 5899999663 4789998765311 112211100
Q ss_pred CCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 340 AARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
.-+|..- ...++...++.+|.+-| +..++||..+++=..
T Consensus 159 ~~~Gip~-----~iDaAf~~~g~~YfFkg--~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 159 DFPGIGD-----KVDAVYEKNGYIYFFNG--PIQFEYSIWSNRIVR 197 (207)
T ss_dssp HSTTSCS-----CCSEEEEETTEEEEEET--TEEEEEETTTTEEEE
T ss_pred cCCCCCC-----CccEEEEcCCcEEEEEC--CEEEEEeCCccEEec
Confidence 0011110 01144556999999954 789999988766433
No 215
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=93.18 E-value=6.1 Score=37.71 Aligned_cols=174 Identities=10% Similarity=-0.000 Sum_probs=99.7
Q ss_pred cceEEEEecCCCcEEeCC--CCCCCccccccCceEEE--eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC--CCCCC
Q 012701 165 LLEWEAFDPIRRRWMHLP--RMTSNECFMCSDKESLA--VGTELLVFGRELTAHHISHVIYRYSILTNSWSSG--MRMNA 238 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~--~~p~~~~~~~~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~ 238 (458)
...++.+++....-..+. .+..+ ..+++ .++.||+.-. ..+.|+++++....-+.+ ..+..
T Consensus 94 ~~~I~r~~~~g~~~~~~~~~~~~~p-------~glavd~~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~~~l~~ 160 (349)
T 3v64_C 94 LDRILRANLNGSNVEEVVSTGLESP-------GGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLWQSLEK 160 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCC-------CEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECTTCSC
T ss_pred CCceEEEecCCCCceEEEeCCCCCc-------cEEEEecCCCeEEEEcC------CCCeEEEEcCCCCceEEEEeCCCCC
Confidence 346777887766543332 11111 11222 3789998853 335789999876543333 22333
Q ss_pred CCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCccee-EEEE--CCEEEEEccccCCCCcc
Q 012701 239 PRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCS-GVFM--DGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 239 ~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~--~g~lyv~GG~~~~~~~~ 313 (458)
|+ +.++. ++.||+.--.. ...++++++....-+.+..- ...... .++- +++||+.-. .
T Consensus 161 P~---~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~~--~~~~PnGla~d~~~~~lY~aD~-------~ 223 (349)
T 3v64_C 161 PR---AIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIADT--HLFWPNGLTIDYAGRRMYWVDA-------K 223 (349)
T ss_dssp EE---EEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCCS--SCSCEEEEEEETTTTEEEEEET-------T
T ss_pred cc---eEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEEC--CCCCcceEEEeCCCCEEEEEEC-------C
Confidence 32 33443 68999984311 36799999876544444321 122222 3332 789999832 2
Q ss_pred cceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 314 LTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 314 ~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
...|+++|+....-..+..... ..|.++++.++.||+.....+.|.++|..+++-
T Consensus 224 ~~~I~~~~~dG~~~~~~~~~~~---------------~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 224 HHVIERANLDGSHRKAVISQGL---------------PHPFAITVFEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSC---------------SSEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCEEEEEeCCCCceEEEEeCCC---------------CCceEEEEECCEEEEecCCCCeEEEEEccCCCc
Confidence 3578999987543222211110 112267778999999998889999999655543
No 216
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=93.14 E-value=6.2 Score=37.70 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=47.5
Q ss_pred CCEEEEEEc----------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEe
Q 012701 360 NNELYAADY----------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 360 ~~~lyv~gg----------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~ 429 (458)
++++|+... ....|++||..+.+ .+..++... . +++++..-+..||+.++ ..+.+|
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p---~~ia~spdg~~l~v~n~--------~~v~v~ 330 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-A---LSMTIDQQRNLMLTLDG--------GNVNVY 330 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-C---CEEEEETTTTEEEEECS--------SCEEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-e---eEEEECCCCCEEEEeCC--------CeEEEE
Confidence 378998753 13589999988764 455444433 1 45655545667777663 246677
Q ss_pred ecCCCCCCc--eEeecc-CCCceeeeEEE
Q 012701 430 VPSEGPPQW--NLLARK-QSANFVYNCAV 455 (458)
Q Consensus 430 ~~~~~~~~W--~~l~~~-p~~~~~~~~~v 455 (458)
+. .++ +.+..+ +.+..-+..++
T Consensus 331 D~----~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 331 DI----SQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp EC----SSSSCEEEEEETTSCSSEEEEEE
T ss_pred EC----CCCcceeeEEeccCCCCcEEEEe
Confidence 65 456 777774 55655554443
No 217
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.13 E-value=4.3 Score=38.88 Aligned_cols=182 Identities=9% Similarity=0.065 Sum_probs=91.5
Q ss_pred cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCC
Q 012701 165 LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAP 239 (458)
Q Consensus 165 ~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~ 239 (458)
...+..||..+++-...-....+.. +...-..+.+ ++.+++.|+. ...+.+||+.+.. -..+.. -
T Consensus 179 D~~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sgs~------D~~v~~wd~~~~~~~~~~~~~---h 248 (380)
T 3iz6_a 179 DQTCVLWDVTTGQRISIFGSEFPSG-HTADVLSLSINSLNANMFISGSC------DTTVRLWDLRITSRAVRTYHG---H 248 (380)
T ss_dssp TSCEEEECTTTCCEEEEECCCSSSS-CCSCEEEEEECSSSCCEEEEEET------TSCEEEEETTTTCCCCEEECC---C
T ss_pred CCcEEEEEcCCCcEEEEeecccCCC-CccCeEEEEeecCCCCEEEEEEC------CCeEEEEECCCCCcceEEECC---c
Confidence 4456778887765443221111111 1111112222 5567777754 3568889986321 111111 0
Q ss_pred CceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC-CC----CCc-ceeEE-EECCEEEEEccccCCC
Q 012701 240 RCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM-KN----PRK-MCSGV-FMDGKFYVIGGIGGSD 310 (458)
Q Consensus 240 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~----~r~-~~~~~-~~~g~lyv~GG~~~~~ 310 (458)
.....++.+ ++..++.|+.+ ..+.+||..++.-...-.. +. ... ..+.+ ..+|++++.|+.+
T Consensus 249 ~~~v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--- 319 (380)
T 3iz6_a 249 EGDINSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN--- 319 (380)
T ss_dssp SSCCCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---
T ss_pred CCCeEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC---
Confidence 111112222 55677777765 3588899988753222111 10 011 12222 2377777777654
Q ss_pred CcccceEEEEECCCCceE-EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCC
Q 012701 311 SKVLTCGEEYDLETETWT-EIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~-~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
..+.+||..+.+-. .+..+.....+. -.+++.. ++..++.|+.++.|.+|+....
T Consensus 320 ----g~i~vwd~~~~~~~~~~~~~~~~h~~~------------v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 320 ----GDCYVWDTLLAEMVLNLGTLQNSHEGR------------ISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ----SCEEEEETTTCCEEEEECCSCSSCCCC------------CCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred ----CCEEEEECCCCceEEEEecccCCCCCc------------eEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 35788998776543 222222222211 0133332 6778888888899999997654
No 218
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=92.79 E-value=1.7 Score=44.00 Aligned_cols=132 Identities=14% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
++++++.++.+ ..+.+||.....-..+.... ..-.++++ -++++++.|+.+ ..+..||.....-
T Consensus 437 d~~~l~~~~~d------~~v~~w~~~~~~~~~~~~~~--~~v~~~~~spd~~~las~~~d-------~~i~iw~~~~~~~ 501 (577)
T 2ymu_A 437 DDQTIASASDD------KTVKLWNRNGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDD-------KTVKLWNRNGQLL 501 (577)
T ss_dssp TSSEEEEEETT------SEEEEEETTSCEEEEEECCS--SCEEEEEECTTSCEEEEEETT-------SEEEEEETTSCEE
T ss_pred CCCEEEEEcCC------CEEEEEECCCCEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCC-------CEEEEEcCCCCEE
Confidence 45666666644 35778887654433332211 11112222 377887777654 3577788654333
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe
Q 012701 328 TEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC 406 (458)
Q Consensus 328 ~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~ 406 (458)
..+.. .... -..++.. ++++++.++.++.|.+||.....-..+..-.... ..++ ...
T Consensus 502 ~~~~~----h~~~------------v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v-----~~~~-fs~ 559 (577)
T 2ymu_A 502 QTLTG----HSSS------------VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV-----WGVA-FSP 559 (577)
T ss_dssp EEEEC----CSSC------------EEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCE-----EEEE-ECT
T ss_pred EEEeC----CCCC------------EEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCE-----EEEE-EcC
Confidence 32221 1111 0022222 6777777888889999997554433332211111 1122 234
Q ss_pred CCEEEEEcCCC
Q 012701 407 GDRLIVIGGPK 417 (458)
Q Consensus 407 ~~~lyv~GG~~ 417 (458)
+++.++.||.+
T Consensus 560 dg~~l~s~~~D 570 (577)
T 2ymu_A 560 DGQTIASASSD 570 (577)
T ss_dssp TSSCEEEEETT
T ss_pred CCCEEEEEeCC
Confidence 66666777643
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=92.63 E-value=0.95 Score=42.80 Aligned_cols=143 Identities=6% Similarity=-0.061 Sum_probs=78.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEE-EeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA-SLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+|+++. ....+++||+.++..+... ++ ..-.+.+ .-++.+|+... ..+.+||+.+++.+
T Consensus 60 ~~~l~~~d~------~~~~i~~~d~~~~~~~~~~-~~--~~v~~i~~~~dg~l~v~~~--------~gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 60 SGTAWWFNI------LERELHELHLASGRKTVHA-LP--FMGSALAKISDSKQLIASD--------DGLFLRDTATGVLT 122 (326)
T ss_dssp TTEEEEEEG------GGTEEEEEETTTTEEEEEE-CS--SCEEEEEEEETTEEEEEET--------TEEEEEETTTCCEE
T ss_pred CCEEEEEEC------CCCEEEEEECCCCcEEEEE-CC--CcceEEEEeCCCeEEEEEC--------CCEEEEECCCCcEE
Confidence 367887763 2357999999988665432 12 1112222 23678877631 34899999999887
Q ss_pred EcCCCCCCC--cceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 280 VLPSMKNPR--KMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 280 ~~~~~p~~r--~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
.+...+... .....+. -+|++|+..... ........+++|| +.+...+.. ..... ..
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-~~~~~~~~l~~~~--~g~~~~~~~---~~~~~-------------~~ 183 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGR-KAETGAGSIYHVA--KGKVTKLFA---DISIP-------------NS 183 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEET-TCCTTCEEEEEEE--TTEEEEEEE---EESSE-------------EE
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC-cCCCCceEEEEEe--CCcEEEeeC---CCccc-------------CC
Confidence 764432211 1111222 267887743211 1111235688888 455554321 00000 03
Q ss_pred EEEE-CC-EEEEEEcCCCeEEEEeCC
Q 012701 356 VAVV-NN-ELYAADYADMEVRKYDKE 379 (458)
Q Consensus 356 ~~~~-~~-~lyv~gg~~~~v~~yd~~ 379 (458)
++.. ++ .||+.+...+.|++||..
T Consensus 184 i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred eEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 3333 44 688887667899999975
No 220
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.61 E-value=1.6 Score=49.11 Aligned_cols=186 Identities=11% Similarity=0.075 Sum_probs=94.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV 280 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 280 (458)
++..+++|+. ...+.+||..+++......-........+..-++..++.|+.+ ..+.+||..++....
T Consensus 972 ~g~~l~~g~~------~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------g~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 972 HLEYVAFGDE------DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED------SVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp TSSEEEEEET------TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS------SBEEEEETTTTEEEC
T ss_pred CCCEEEEEcC------CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCceEE
Confidence 4555666643 3467889988775433211111111111222255666676654 468899999987664
Q ss_pred cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 360 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (458)
..... ......+...+..++.|+.+ ..+.+||+.+.+-...-......... ....-+
T Consensus 1040 ~~~~~--~~v~~~~~~~~~~l~~~~~d-------g~v~vwd~~~~~~~~~~~~~~~~v~~--------------~~~s~d 1096 (1249)
T 3sfz_A 1040 LQAHQ--ETVKDFRLLQDSRLLSWSFD-------GTVKVWNVITGRIERDFTCHQGTVLS--------------CAISSD 1096 (1249)
T ss_dssp CBCCS--SCEEEEEECSSSEEEEEESS-------SEEEEEETTTTCCCEEEECCSSCCCC--------------EEECSS
T ss_pred EecCC--CcEEEEEEcCCCcEEEEECC-------CcEEEEECCCCceeEEEcccCCcEEE--------------EEECCC
Confidence 33211 12222333333344555544 35888999876522110000111111 222336
Q ss_pred CEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 361 NELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
+++++.++..+.|.+||..+.. .+..+..... .-.+++ ..++++++.|+.+. .+.+|+...
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~~~~--~~~~l~~h~~----~v~~~~~s~dg~~lat~~~dg------~i~vwd~~~ 1158 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFDLLS--PLHELKGHNG----CVRCSAFSLDGILLATGDDNG------EIRIWNVSD 1158 (1249)
T ss_dssp SSSCEEECCSSCCCEECSSSSS--CSBCCCCCSS----CEEEEEECSSSSEEEEEETTS------CCCEEESSS
T ss_pred CCEEEEEcCCCcEEEEECCCcc--eeeeeccCCC----cEEEEEECCCCCEEEEEeCCC------EEEEEECCC
Confidence 6777888888899999987654 2222222111 112222 23667777776432 356777654
No 221
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=92.47 E-value=6.2 Score=39.96 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=78.5
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
+..++.|+. ....+.+||..++.... ..+........+..+ ++.+++.|+.+ ..+.+||..+++-.
T Consensus 456 ~~~l~~~~~-----~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~ 523 (615)
T 1pgu_A 456 QNYVAVGLE-----EGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVK 523 (615)
T ss_dssp SSEEEEEET-----TTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEE
T ss_pred CCEEEEeec-----CCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCcce
Confidence 445555532 14568999998876643 222222222223333 66777777755 45889999877543
Q ss_pred EcCCCCC-CCcceeEEEE------------CCEEEEEccccCCCCcccceEEEEECCCC--ceEEcCCCCCCCCCCCCCC
Q 012701 280 VLPSMKN-PRKMCSGVFM------------DGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 280 ~~~~~p~-~r~~~~~~~~------------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~i~~~p~~r~~~~~~~ 344 (458)
. .+.. .......+.+ ++++++.|+.+ ..+.+||+.+. ....+... ...
T Consensus 524 ~--~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~h----~~~---- 586 (615)
T 1pgu_A 524 T--SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD-------TNIFIYSVKRPMKIIKALNAH----KDG---- 586 (615)
T ss_dssp E--CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT-------SCEEEEESSCTTCCEEETTSS----TTC----
T ss_pred e--EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC-------CcEEEEECCCCceechhhhcC----ccc----
Confidence 2 2221 1222222332 67888888765 36888999875 23332211 111
Q ss_pred CCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCC
Q 012701 345 EMPASAEAPPLVAVVNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
.......-++. ++.++.++.|.+||+.+
T Consensus 587 -------v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 587 -------VNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -------EEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred -------eEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 00022334788 77788888999998765
No 222
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.27 E-value=8.6 Score=37.12 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCC---CC--------------CCceeeEEEe---CCEEEEEeccCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRM---NA--------------PRCLFGSASL---GEIAILAGGSDL 260 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~--------------~r~~~~~~~~---~~~lyv~GG~~~ 260 (458)
.+.||+.+ ....+++.+-...+|+.+..+ |. ....+.++.. .+.||+....
T Consensus 128 ~~~l~~g~-------~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~-- 198 (394)
T 3b7f_A 128 PGTWYAGT-------SPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSS-- 198 (394)
T ss_dssp TTCEEEEE-------ETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEET--
T ss_pred CCEEEEEe-------cCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECC--
Confidence 46777764 224588887778899987432 21 1112233332 2567776432
Q ss_pred CCCccCeEEEEeCCCCcEEEcCCC------CCC-----CcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 261 EGNILSSAEMYNSETQTWKVLPSM------KNP-----RKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 261 ~~~~~~~v~~yd~~t~~W~~~~~~------p~~-----r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
..+++.+-...+|+.+..- |.+ ...+..++. .+.||+... ..+++.+-...+
T Consensus 199 -----ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~---------~gl~~s~D~G~t 264 (394)
T 3b7f_A 199 -----GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH---------CGIYRMDRREGV 264 (394)
T ss_dssp -----BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET---------TEEEEEETTTTE
T ss_pred -----CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC---------CeEEEeCCCCCc
Confidence 2467777777899987531 211 112333332 167777421 247888888899
Q ss_pred eEEcCC-CCCCCCCCCCCCCCCCCcCCCCEEEE---ECCEEEEEEc------------CCCeEEEEeCCCCceEEec-cC
Q 012701 327 WTEIPN-MSPARGGAARGTEMPASAEAPPLVAV---VNNELYAADY------------ADMEVRKYDKERRLWFTIG-RL 389 (458)
Q Consensus 327 W~~i~~-~p~~r~~~~~~~~~~~~~~~~~~~~~---~~~~lyv~gg------------~~~~v~~yd~~~~~W~~v~-~l 389 (458)
|+.+.. +|..-... ...+++ -.+.||+... ....+++-.-...+|+.+. .+
T Consensus 265 W~~~~~~l~~~~~~~------------~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 265 WKRIGDAMPREVGDI------------GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp EECGGGGSCTTTCSC------------EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred ceECCCCCCCCCccc------------eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence 998864 43311011 002333 2467888741 1124444443447899985 35
Q ss_pred CCccCC--CCcccEEEEEeC-CEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeec-cCC
Q 012701 390 PERANS--MNGWGLAFRACG-DRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR-KQS 446 (458)
Q Consensus 390 p~~~~~--~~~~~~a~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~-~p~ 446 (458)
|..... .....+++...+ +.||+ |+.. -.+|.-.....+|+.+.. +|.
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~-g~~~--------g~l~~S~D~G~tW~~~~~~lp~ 384 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYF-GTTG--------GEIWASADEGEHWQCIASHLPH 384 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEE-ECTT--------SCEEEESSTTSBCEEEECSCSC
T ss_pred CCccccceEEEEEEEECCCCCCEEEE-EeCC--------CeEEEECCCCCCceEcccCCCC
Confidence 542110 000112222123 45665 4321 125665556679999863 553
No 223
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.26 E-value=3.5 Score=39.09 Aligned_cols=154 Identities=7% Similarity=-0.153 Sum_probs=77.6
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCE-EEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCcee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTE-LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLF 243 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~-lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~ 243 (458)
..++.+|..+++...+...+... ......- ++. |++... .........++++|..++.++.+.. ..+....
T Consensus 168 ~~l~~~d~~~g~~~~~~~~~~~~-----~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~ 240 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQDTAWL-----GHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESC 240 (396)
T ss_dssp EEEEEEETTTCCEEEEEEESSCE-----EEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEE
T ss_pred ceEEEEECCCCcEEeeccCCccc-----ccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccc
Confidence 35777888877765554211110 0111222 243 444432 1111122578999998888877654 2212122
Q ss_pred eEEEe--CC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccC---------CC
Q 012701 244 GSASL--GE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGG---------SD 310 (458)
Q Consensus 244 ~~~~~--~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~---------~~ 310 (458)
....+ ++ .|++.....+. ....++++|+.+++.+.+...+. .. ....- +|+++++.+... ..
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~ 315 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQ--TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYN 315 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTT--CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEECCC----------C
T ss_pred cceEECCCCCEEEEEecCCCC--ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccc
Confidence 22222 34 45444322221 12449999999988776654432 11 22233 788777654210 00
Q ss_pred CcccceEEEEECCCCceEEcC
Q 012701 311 SKVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~i~ 331 (458)
......++.+|+.+++...+.
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 316 IENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp CCCCCEEEEEETTTTBCCEEE
T ss_pred cCCCCcEEEEecccCceEEcc
Confidence 112357899999887765543
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=92.07 E-value=2 Score=39.96 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=88.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-C--ceeeEEE-eCCEEEEE----eccCC-------CCCcc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-R--CLFGSAS-LGEIAILA----GGSDL-------EGNIL 265 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r--~~~~~~~-~~~~lyv~----GG~~~-------~~~~~ 265 (458)
+++||+... ....+++||+. ++.+.+...... + .-...+. -++.||+. |-... .....
T Consensus 96 dG~l~v~~~------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~ 168 (305)
T 3dr2_A 96 QQRLVHCEH------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAH 168 (305)
T ss_dssp TSCEEEEET------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSC
T ss_pred CCCEEEEEC------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCC
Confidence 567777631 22468888885 666554321111 1 0112222 26788885 32210 01113
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECCCCceEE---cCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTE---IPNMSPARGGA 340 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~---i~~~p~~r~~~ 340 (458)
..+++||+.+++.+.+. .... -...++. ++ .||+..... .......+++||+..+.... +...+..
T Consensus 169 ~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~~--~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~---- 239 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTPE--QGHGSVEITAFAWRDGALHDRRHFASVPDG---- 239 (305)
T ss_dssp EEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTEEEEEEEEECCSSS----
T ss_pred CeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecCC--cCCCCCEEEEEEecCCCccCCeEEEECCCC----
Confidence 57999999988887664 1111 1122332 45 478764321 00012468899887654221 1111111
Q ss_pred CCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 341 ARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
.+..+++ .+|.||+.. .+.|.+||+..+.-..+. +|... ...++..-++.||+..
T Consensus 240 -----------~pdgi~~d~~G~lwv~~--~~gv~~~~~~g~~~~~~~-~~~~~-----~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 240 -----------LPDGFCVDRGGWLWSSS--GTGVCVFDSDGQLLGHIP-TPGTA-----SNCTFDQAQQRLFITG 295 (305)
T ss_dssp -----------CCCSEEECTTSCEEECC--SSEEEEECTTSCEEEEEE-CSSCC-----CEEEECTTSCEEEEEE
T ss_pred -----------CCCeEEECCCCCEEEec--CCcEEEECCCCCEEEEEE-CCCce-----eEEEEeCCCCEEEEEc
Confidence 1113333 367788875 356999999776655553 33321 1233321234677765
No 225
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=92.04 E-value=0.91 Score=44.63 Aligned_cols=102 Identities=9% Similarity=0.027 Sum_probs=53.2
Q ss_pred EEEEeccCCCCCccCeEEEEeCCCC---cEEE--cCCCCCC-CcceeEEEE--CCEEEEEccccCCCCcccceEEEEECC
Q 012701 252 AILAGGSDLEGNILSSAEMYNSETQ---TWKV--LPSMKNP-RKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLE 323 (458)
Q Consensus 252 lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~--~~~~p~~-r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~ 323 (458)
+++.|+.+ ..+.+||..+. .+.. ....... .....++.. ++.+++.|+.+ ..+.+||+.
T Consensus 196 ~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-------g~i~i~d~~ 262 (430)
T 2xyi_A 196 YLLSASDD------HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-------QKLMIWDTR 262 (430)
T ss_dssp EEEEECTT------SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETT
T ss_pred eEEEEeCC------CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-------CeEEEEECC
Confidence 66777755 45888998873 2221 1111111 112223332 56677776654 468899998
Q ss_pred CCc-eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CC-EEEEEEcCCCeEEEEeCCC
Q 012701 324 TET-WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NN-ELYAADYADMEVRKYDKER 380 (458)
Q Consensus 324 ~~~-W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~-~lyv~gg~~~~v~~yd~~~ 380 (458)
+.. ...+..+. ..... ...+.. ++ .+++.|+..+.|.+||..+
T Consensus 263 ~~~~~~~~~~~~-~~~~~-------------v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 263 NNNTSKPSHTVD-AHTAE-------------VNCLSFNPYSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp CSCSSSCSEEEE-CCSSC-------------EEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred CCCCCcceeEee-cCCCC-------------eEEEEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence 652 10000010 00000 122333 23 4888898899999999876
No 226
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=91.95 E-value=7.2 Score=35.59 Aligned_cols=194 Identities=12% Similarity=0.107 Sum_probs=96.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCC--ceeeCCCCCCCCceeeEEEe----CCEEEEEeccCCCCCccCeEEEEeCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTN--SWSSGMRMNAPRCLFGSASL----GEIAILAGGSDLEGNILSSAEMYNSE 274 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~ 274 (458)
++.+++.|+. ...+.+||..++ .++....+........++.+ ++.+++.|+.+ ..+.+||..
T Consensus 22 ~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d------g~v~vwd~~ 89 (351)
T 3f3f_A 22 YGRHVATCSS------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD------KTVKLWEED 89 (351)
T ss_dssp SSSEEEEEET------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEC
T ss_pred CCCEEEEeeC------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC------CeEEEEecC
Confidence 4445555543 346778887754 34333222211222222222 26677777765 357788887
Q ss_pred CC-------cEEEcCCCCCCCcceeEEEE--C--CEEEEEccccCCCCcccceEEEEECCCCc----eEEc---CCCCCC
Q 012701 275 TQ-------TWKVLPSMKNPRKMCSGVFM--D--GKFYVIGGIGGSDSKVLTCGEEYDLETET----WTEI---PNMSPA 336 (458)
Q Consensus 275 t~-------~W~~~~~~p~~r~~~~~~~~--~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~i---~~~p~~ 336 (458)
++ .|+.+..+.........+.+ + +.+++.|+.+ ..+..||+.+.+ |..- ..+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND-------GILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-------CEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC-------CcEEEecCCChHHhccccccccccccccc
Confidence 64 34443333222222222322 3 6677777654 367889987654 2210 001000
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEE-----CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe-CC--
Q 012701 337 RGGAARGTEMPASAEAPPLVAVV-----NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC-GD-- 408 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~-----~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~-~~-- 408 (458)
...+ ......... ++.++++++..+.+..++........+..++..... -.++... ++
T Consensus 163 ~~~~----------~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----i~~~~~~p~~~~ 228 (351)
T 3f3f_A 163 PANH----------LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL----IRSISWAPSIGR 228 (351)
T ss_dssp CSSC----------SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC----EEEEEECCCSSC
T ss_pred cCCc----------ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc----eeEEEECCCCCC
Confidence 0000 000122222 367778887777887777777777666555432221 1223333 33
Q ss_pred --EEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 409 --RLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 409 --~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.+++.|+.+. .+.+|+...
T Consensus 229 ~~~~l~s~~~dg------~i~iwd~~~ 249 (351)
T 3f3f_A 229 WYQLIATGCKDG------RIRIFKITE 249 (351)
T ss_dssp SSEEEEEEETTS------CEEEEEEEE
T ss_pred cceEEEEEcCCC------eEEEEeCCC
Confidence 6788887543 366777654
No 227
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=91.92 E-value=10 Score=40.26 Aligned_cols=174 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC----CCCCCCc
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM----RMNAPRC 241 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~----~~p~~r~ 241 (458)
.-+..||+.+.++...... ... . -..++..++.|+|.. .+.+++||+.+++.+... .++...
T Consensus 82 ~Gl~~yd~~~~~f~~~~~~-~~~-~---i~~i~~~~g~lWigt--------~~Gl~~~~~~~~~~~~~~~~~~~l~~~~- 147 (758)
T 3ott_A 82 NGILVYNYRADRYEQPETD-FPT-D---VRTMALQGDTLWLGA--------LNGLYTYQLQSRKLTSFDTRRNGLPNNT- 147 (758)
T ss_dssp TEEEEEETTTTEECCCSCC-CCS-C---EEEEEEETTEEEEEE--------TTEEEEEETTTCCEEEECHHHHCCSCSC-
T ss_pred CCeEEEeCCCCEEECcccC-CCc-e---EEEEEecCCcEEEEc--------CCcceeEeCCCCeEEEeccCCCCcCCCe-
Confidence 3577899999877651111 110 0 112233477777752 236899999998887652 122111
Q ss_pred eeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCC-CC---cceeEEEE-C-CEEEEEccccCCCCccc
Q 012701 242 LFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN-PR---KMCSGVFM-D-GKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 242 ~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r---~~~~~~~~-~-g~lyv~GG~~~~~~~~~ 314 (458)
-.+.... ++.|||.. . ..+.+||+.+++++....... .. .-.+.+.. + +.|+|- - .
T Consensus 148 i~~i~~d~~g~lWigt--~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig-t-~------- 210 (758)
T 3ott_A 148 IYSIIRTKDNQIYVGT--Y------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG-T-E------- 210 (758)
T ss_dssp EEEEEECTTCCEEEEE--T------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE-E-E-------
T ss_pred EEEEEEcCCCCEEEEe--C------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE-E-C-------
Confidence 1222222 56788742 1 358889999998876542111 01 11122222 2 346663 2 1
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 315 TCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
..+..||+.++++..+..++.... . +++.- +|.|++.. .+.+.+||+.++.++.+.
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i-~--------------~i~~d~~g~lWigT--~~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSI-K--------------SLALDGNGDLLAGT--DNGLYVYHNDTTPLQHII 267 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEE-E--------------EEEECTTCCEEEEE--TTEEEEECCTTSCCEEEC
T ss_pred CCCeEEcCCCCeEEeccCCCCCeE-E--------------EEEEcCCCCEEEEe--CCceeEEecCCCcEEEEE
Confidence 247889999988876543221110 0 22222 56777764 357999999988887664
No 228
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.91 E-value=3.9 Score=41.28 Aligned_cols=142 Identities=10% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++..++.|+. ...+.+||.....-..+... .....++.+ +++.++.|+.+ ..+.+||.....-
T Consensus 355 ~g~~l~~~~~------dg~v~~~~~~~~~~~~~~~~---~~~v~~~~~s~dg~~l~~~~~d------~~v~~~~~~~~~~ 419 (577)
T 2ymu_A 355 DGQTIASASD------DKTVKLWNRNGQLLQTLTGH---SSSVRGVAFSPDGQTIASASDD------KTVKLWNRNGQLL 419 (577)
T ss_dssp TSSEEEEEET------TSEEEEEETTCCEEEEEECC---SSCEEEEEECTTSSCEEEEETT------SEEEEECTTCCEE
T ss_pred CCCEEEEEeC------CCEEEEEcCCCCEEEEecCC---CCCeEEEEECCCCCEEEEEeCC------CEEEEEeCCCCEE
Confidence 4555566543 34577788644333332211 111122222 45556666644 3577888544333
Q ss_pred EEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE
Q 012701 279 KVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA 357 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~ 357 (458)
..+..... .-.+.++ -++++++.++.+ ..+..||.....-..+.... ... ..++
T Consensus 420 ~~~~~~~~--~v~~~~~s~d~~~l~~~~~d-------~~v~~w~~~~~~~~~~~~~~---~~v-------------~~~~ 474 (577)
T 2ymu_A 420 QTLTGHSS--SVWGVAFSPDDQTIASASDD-------KTVKLWNRNGQLLQTLTGHS---SSV-------------RGVA 474 (577)
T ss_dssp EEEECCSS--CEEEEEECTTSSEEEEEETT-------SEEEEEETTSCEEEEEECCS---SCE-------------EEEE
T ss_pred EEecCCCC--CeEEEEECCCCCEEEEEcCC-------CEEEEEECCCCEEEEEcCCC---CCE-------------EEEE
Confidence 32221111 1112222 267777776654 35778887655443332111 010 0222
Q ss_pred EE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 358 VV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 358 ~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.. ++++++.++.++.|.+||...+.
T Consensus 475 ~spd~~~las~~~d~~i~iw~~~~~~ 500 (577)
T 2ymu_A 475 FSPDGQTIASASDDKTVKLWNRNGQL 500 (577)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSCE
T ss_pred EcCCCCEEEEEeCCCEEEEEcCCCCE
Confidence 22 67888888888999999975443
No 229
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.86 E-value=3.7 Score=38.20 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=80.3
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce-eEEEE-CCEEEEEccccCCCCcccceEEEEECCCCce
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC-SGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETW 327 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W 327 (458)
+.+++.|+.+ ..+.+||..+........+....... +++.. ++++++.|+.+ ..+.+||+.+...
T Consensus 54 g~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------g~v~iwd~~~~~~ 120 (368)
T 3mmy_A 54 GNFLIAGSWA------NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-------KTAKMWDLSSNQA 120 (368)
T ss_dssp SEEEEEEETT------SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEE
T ss_pred ceEEEEECCC------CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-------CcEEEEEcCCCCc
Confidence 4777777765 45888888873322211111111111 22222 66777777654 3688899998875
Q ss_pred EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE---ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE
Q 012701 328 TEIPNMSPARGGAARGTEMPASAEAPPLVAV---VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR 404 (458)
Q Consensus 328 ~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~---~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~ 404 (458)
..+...... -. .++. -++.+++.++.++.|.+||..+.+-...-..+.. ..++.
T Consensus 121 ~~~~~~~~~--v~--------------~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~ 177 (368)
T 3mmy_A 121 IQIAQHDAP--VK--------------TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPER-------CYCAD 177 (368)
T ss_dssp EEEEECSSC--EE--------------EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSC-------EEEEE
T ss_pred eeeccccCc--eE--------------EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCC-------ceEEE
Confidence 543221110 01 2332 2667888888889999999987653222222221 23344
Q ss_pred EeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 405 ACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 405 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
...+.+++.++. ..+.+|+.......+..+
T Consensus 178 ~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~~ 207 (368)
T 3mmy_A 178 VIYPMAVVATAE-------RGLIVYQLENQPSEFRRI 207 (368)
T ss_dssp EETTEEEEEEGG-------GCEEEEECSSSCEEEEEC
T ss_pred ecCCeeEEEeCC-------CcEEEEEeccccchhhhc
Confidence 455655554432 245677776554455444
No 230
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=91.86 E-value=9 Score=36.48 Aligned_cols=181 Identities=6% Similarity=-0.087 Sum_probs=92.0
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcc-eeE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKM-CSG 293 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~ 293 (458)
....+.++|+.+.+-..... ....-..++. -++++++.++ + +.+.+++..++.-............ .++
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s-~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYIT-G------SSLEVISTVTGSCIARKTDFDKNWSLSKI 225 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEEC-S------SCEEEEETTTCCEEEEECCCCTTEEEEEE
T ss_pred CCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEecc-c------eeEEEEEeccCcceeeeecCCCCCCEEEE
Confidence 34568899998876543221 1111112222 2455555544 2 3467788877765432222111111 122
Q ss_pred -EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCC--CCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcC
Q 012701 294 -VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPN--MSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYA 369 (458)
Q Consensus 294 -~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~--~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~ 369 (458)
..-+++.++.++.++. ....+..+|........... +....... .+++. -++++++.|+.
T Consensus 226 ~fspdg~~l~~~s~d~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V-------------~~~~~Spdg~~lasgs~ 289 (365)
T 4h5i_A 226 NFIADDTVLIAASLKKG---KGIVLTKISIKSGNTSVLRSKQVTNRFKGI-------------TSMDVDMKGELAVLASN 289 (365)
T ss_dssp EEEETTEEEEEEEESSS---CCEEEEEEEEETTEEEEEEEEEEESSCSCE-------------EEEEECTTSCEEEEEET
T ss_pred EEcCCCCEEEEEecCCc---ceeEEeecccccceecceeeeeecCCCCCe-------------EeEEECCCCCceEEEcC
Confidence 2458888888776522 22346667776665543221 11111111 01222 27888899999
Q ss_pred CCeEEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEEeecC
Q 012701 370 DMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNSWVPS 432 (458)
Q Consensus 370 ~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~ 432 (458)
++.|.+||..+.+ .+..+..... +.-.+++ .-++++++.|+.+. .+.+|+..
T Consensus 290 D~~V~iwd~~~~~--~~~~~~~gH~---~~V~~v~fSpdg~~laS~S~D~------tvrvw~ip 342 (365)
T 4h5i_A 290 DNSIALVKLKDLS--MSKIFKQAHS---FAITEVTISPDSTYVASVSAAN------TIHIIKLP 342 (365)
T ss_dssp TSCEEEEETTTTE--EEEEETTSSS---SCEEEEEECTTSCEEEEEETTS------EEEEEECC
T ss_pred CCEEEEEECCCCc--EEEEecCccc---CCEEEEEECCCCCEEEEEeCCC------eEEEEEcC
Confidence 9999999998765 2222211111 1112222 24677777776432 57788753
No 231
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=91.79 E-value=4.3 Score=38.82 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=81.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEE--EeCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSA--SLGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++++++.++ .+.+.+++..++.-..............++ .-++..++.++.++.. ...+..+|......
T Consensus 187 dg~~l~s~s-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 187 DGKVVAYIT-------GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNT 257 (365)
T ss_dssp TSSEEEEEC-------SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEE
T ss_pred CCceEEecc-------ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeeccccccee
Confidence 556666653 235677888777654322222122222222 2377777777766432 23566777766655
Q ss_pred EEcC--CCCCCCcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 279 KVLP--SMKNPRKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 279 ~~~~--~~p~~r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
.... .+......-.++ .-+|++++.|+.+ ..|.+||..+.+-.. .+....... -.
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-------~~V~iwd~~~~~~~~--~~~~gH~~~------------V~ 316 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGELAVLASND-------NSIALVKLKDLSMSK--IFKQAHSFA------------IT 316 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-------SCEEEEETTTTEEEE--EETTSSSSC------------EE
T ss_pred cceeeeeecCCCCCeEeEEECCCCCceEEEcCC-------CEEEEEECCCCcEEE--EecCcccCC------------EE
Confidence 4321 111111111222 2378888888865 358889998765321 111122211 00
Q ss_pred EEEEE-CCEEEEEEcCCCeEEEEeCCCC
Q 012701 355 LVAVV-NNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
+++.. ++++++-|..++.|.+||+..+
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 22222 7888888889999999997543
No 232
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.61 E-value=6 Score=39.99 Aligned_cols=209 Identities=13% Similarity=0.020 Sum_probs=104.0
Q ss_pred EEEEEec-cceEEEEecCCCcEEeCCCCCCCccccccCceEEEe----------CCEEEEEcCCCCCcCccceEEEEEcC
Q 012701 158 WVYFSCH-LLEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV----------GTELLVFGRELTAHHISHVIYRYSIL 226 (458)
Q Consensus 158 ~l~~~~~-~~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~----------~~~lyv~GG~~~~~~~~~~v~~yd~~ 226 (458)
-||++.. ...+..+|+..+.-..+....... +. ....+++ ++.||+.--..........+++++..
T Consensus 153 ~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~--~~-~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 153 HLYICYDGHKAIQLIDLKNRMLSSPLNINTIP--TN-RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEETEEEEEEEETTTTEEEEEECCTTSS--CS-BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred EEEEEECCCCeEEEEECCCCEEEEEEccCccc--cC-CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 4555443 246788999998887765443211 00 1112333 44588884321110134458888765
Q ss_pred C-Ccee------eCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCC-------CCc-EEEc--------
Q 012701 227 T-NSWS------SGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSE-------TQT-WKVL-------- 281 (458)
Q Consensus 227 t-~~W~------~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~-------t~~-W~~~-------- 281 (458)
. +.|. .++.+ ...+++++. ++.||+.--. ...+.+||+. +++ |++.
T Consensus 230 ~~G~~~~~~~~~~v~~~---~~p~giavdp~~g~LYvtd~~------~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAAY---KQCNGATIHPINGELYFNSYE------KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp TTSCCSTTSCEEEEEEE---SCCCCEEECTTTCCEEEEETT------TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred CCCceeecccceeeccC---CCceEEEEcCCCCeEEEEECC------CCEEEEEecccccccccCceeeccccccccccc
Confidence 5 3553 22221 222444454 4688888432 3569999997 554 4321
Q ss_pred ---CCCCCCCcceeEEEE-CCE-EEEEccccCCCCcccceEEEE--ECCCCce---EEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 282 ---PSMKNPRKMCSGVFM-DGK-FYVIGGIGGSDSKVLTCGEEY--DLETETW---TEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 282 ---~~~p~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~y--d~~~~~W---~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
...+........++. +|+ |||.-- ....|+++ |..+... +.+...+ ...+...|....+...
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~-------~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVI-------NNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMN 372 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEET-------TTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCS
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeC-------CCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccC
Confidence 112211111223332 454 888731 22457774 4444432 1221111 1111111222222333
Q ss_pred CCC-EEEEE--------CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 352 APP-LVAVV--------NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 352 ~~~-~~~~~--------~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
.|. .+++. ++.||+.......|.++++. +.-+.+.
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~v~Tia 416 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GIVSTYA 416 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CBEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCC-CCEEEEe
Confidence 333 34443 46899999888999999964 4555553
No 233
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=91.45 E-value=5.4 Score=39.87 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=38.1
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeC--CCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSG--MRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 277 (458)
++.+|+|-|. .+|+||..+++.... +.+| . --++....+++|++-| +..++||+.+++
T Consensus 158 ~~~~yfFkG~--------~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG--------~~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQGN--------RKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG--------NQFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEETT--------EEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET--------TEEEEECTTTCC
T ss_pred CCeEEEEecc--------cEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC--------CEEEEEcCccCc
Confidence 6788988664 589999988765421 2222 2 2344445789999977 457778876543
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=91.45 E-value=5.2 Score=36.90 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=73.2
Q ss_pred EeCCEEEEEcCCCCCcCccceEEEEEcC-CCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCC
Q 012701 199 AVGTELLVFGRELTAHHISHVIYRYSIL-TNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQ 276 (458)
Q Consensus 199 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 276 (458)
..++.||+.. ....+++||+. ...|+.....+. ..+.+.. ++.||+. .. -..+..||+. +
T Consensus 105 ~~~~~l~v~t-------~~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~vg-t~------~~~l~~~d~~-g 166 (330)
T 3hxj_A 105 IFEDILYVTS-------MDGHLYAINTDGTEKWRFKTKKAI---YATPIVSEDGTIYVG-SN------DNYLYAINPD-G 166 (330)
T ss_dssp EETTEEEEEC-------TTSEEEEECTTSCEEEEEECSSCC---CSCCEECTTSCEEEE-CT------TSEEEEECTT-S
T ss_pred EECCEEEEEe-------cCCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCCCEEEEE-cC------CCEEEEECCC-C
Confidence 3488888754 23468899987 334655322111 1222334 6677764 21 1468899998 4
Q ss_pred c--EEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCC-CceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 277 T--WKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLET-ETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 277 ~--W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~-~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
+ |+.-.+ ... ..+.+. .++.||+.. ..+++||... ..|...... ....
T Consensus 167 ~~~~~~~~~--~~~-~~~~~~d~~g~l~v~t----------~~l~~~d~~g~~~~~~~~~~--~~~~------------- 218 (330)
T 3hxj_A 167 TEKWRFKTN--DAI-TSAASIGKDGTIYFGS----------DKVYAINPDGTEKWNFYAGY--WTVT------------- 218 (330)
T ss_dssp CEEEEEECS--SCC-CSCCEECTTCCEEEES----------SSEEEECTTSCEEEEECCSS--CCCS-------------
T ss_pred CEeEEEecC--CCc-eeeeEEcCCCEEEEEe----------CEEEEECCCCcEEEEEccCC--ccee-------------
Confidence 3 655322 121 122233 377888753 2478888432 346643221 1111
Q ss_pred CCEEEEE-CCEEEEEEcCCCeEEEEeCCCCc-eEE
Q 012701 353 PPLVAVV-NNELYAADYADMEVRKYDKERRL-WFT 385 (458)
Q Consensus 353 ~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~-W~~ 385 (458)
+++.. ++.||+.. ..+.+.+||...+. |+.
T Consensus 219 --~~~~~~~g~l~v~t-~~~gl~~~~~~g~~~~~~ 250 (330)
T 3hxj_A 219 --RPAISEDGTIYVTS-LDGHLYAINPDGTEKWRF 250 (330)
T ss_dssp --CCEECTTSCEEEEE-TTTEEEEECTTSCEEEEE
T ss_pred --ceEECCCCeEEEEc-CCCeEEEECCCCCEeEEe
Confidence 23333 45777764 45678889875544 543
No 235
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.41 E-value=5.8 Score=36.88 Aligned_cols=142 Identities=10% Similarity=0.053 Sum_probs=72.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++..++.|+.+ ..+.+||..+++-.. .+.........+. -++.+++.|+.+ ..+.+||+....
T Consensus 76 dg~~l~s~s~D------~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D-------~~i~vwd~~~~~ 140 (319)
T 3frx_A 76 DGAYALSASWD------KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRD-------KTIKVWTIKGQC 140 (319)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETT-------SCEEEEETTSCE
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCe
Confidence 55666777755 468899998875321 1111111112222 256777777765 357788887554
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-------ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcc
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAV-------VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGW 399 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~ 399 (458)
-..+..-... -. .+.. .++.+++.++.++.|..||..+.+-.. .+..... .
T Consensus 141 ~~~~~~h~~~--v~--------------~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~h~~----~ 198 (319)
T 3frx_A 141 LATLLGHNDW--VS--------------QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA--DFIGHNS----N 198 (319)
T ss_dssp EEEECCCSSC--EE--------------EEEECCC------CCEEEEEETTSCEEEEETTTTEEEE--EECCCCS----C
T ss_pred EEEEeccCCc--EE--------------EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe--eecCCCC----c
Confidence 3333211000 00 1111 133466777888999999987754322 2211111 0
Q ss_pred cEEEE-EeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 400 GLAFR-ACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 400 ~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
-.+++ ..++++++.||.+. .+.+|+...
T Consensus 199 v~~~~~sp~g~~l~s~~~dg------~i~iwd~~~ 227 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDG------EIMLWNLAA 227 (319)
T ss_dssp EEEEEECTTSSEEEEEETTC------EEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCC------eEEEEECCC
Confidence 12222 23567777776432 466777654
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=91.34 E-value=4.8 Score=40.18 Aligned_cols=117 Identities=14% Similarity=-0.005 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCC----ceeeCCC---C----CCCCceeeEEEe-CCEEEEEeccCCCCCccCeE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTN----SWSSGMR---M----NAPRCLFGSASL-GEIAILAGGSDLEGNILSSA 268 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~----~W~~~~~---~----p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v 268 (458)
+.+|||-|. .++.|+++|..++ +-.+.-. + ...+ -|..... ++ |||..--+..+.....+
T Consensus 95 r~~l~v~~l------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 95 RRFLIVPGL------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp SCEEEEEBT------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred CCEEEEccC------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 557777764 4578999999877 2222110 1 1112 2333333 45 77752222122345889
Q ss_pred EEEeCCCCcEEE-cC--CCCCCCcceeEEE-ECCEEEEEccc------c-CCCC-----cccceEEEEECCCCc
Q 012701 269 EMYNSETQTWKV-LP--SMKNPRKMCSGVF-MDGKFYVIGGI------G-GSDS-----KVLTCGEEYDLETET 326 (458)
Q Consensus 269 ~~yd~~t~~W~~-~~--~~p~~r~~~~~~~-~~g~lyv~GG~------~-~~~~-----~~~~~v~~yd~~~~~ 326 (458)
.++|.+|.+=.. .+ ..+. ...+.... -++++++..-+ . +... ...+.|.+||+.+++
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~-~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQ-YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTC-CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEECCCCeEEEEEccCCCCc-cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 999999875322 11 1111 11222222 24445554321 0 0011 245789999998763
No 237
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=91.23 E-value=1.3 Score=41.44 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=40.6
Q ss_pred eCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECC-EEEEEccccCCCCcccceEEEEECCCC
Q 012701 248 LGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDG-KFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 248 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
.++++|+.++.+ ..+.++|+.+++....-..+.....+..++ -+| .+|+.+... ..+.+||+.+.
T Consensus 9 ~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-------~~i~~~d~~t~ 75 (349)
T 1jmx_B 9 AGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-------GDIYGIDLDTC 75 (349)
T ss_dssp TTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-------TEEEEEETTTT
T ss_pred CCCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC-------CcEEEEeCCCC
Confidence 367888887643 578999999887543222222111223333 245 477765322 46899999887
Q ss_pred ceE
Q 012701 326 TWT 328 (458)
Q Consensus 326 ~W~ 328 (458)
+-.
T Consensus 76 ~~~ 78 (349)
T 1jmx_B 76 KNT 78 (349)
T ss_dssp EEE
T ss_pred cEE
Confidence 654
No 238
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=91.02 E-value=2.7 Score=44.63 Aligned_cols=149 Identities=9% Similarity=0.044 Sum_probs=84.6
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCC--CCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSGM--RMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
.++.||+.-. ..+.|+++++....-+.+. .+..|+ +.++ .++.||+.--. ....++++++..
T Consensus 463 ~~g~LY~tD~------~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~dG 528 (699)
T 1n7d_A 463 IHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLNG 528 (699)
T ss_dssp SSSBCEECCT------TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSSS
T ss_pred eCCcEEEEec------cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCCC
Confidence 3678888742 3456889998776544432 233333 2233 26788887311 125678887764
Q ss_pred CcEEEcCCCCCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 276 QTWKVLPSMKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
..-+.+.... .....++.+ +++||+.-. ....|++||+....-+.+....... ..
T Consensus 529 ~~~~~l~~~~--l~~PnGlavd~~~~~LY~aD~-------~~~~I~~~d~dG~~~~~~~~~~~~~-------------~~ 586 (699)
T 1n7d_A 529 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDS-------KLHSISSIDVNGGNRKTILEDEKRL-------------AH 586 (699)
T ss_dssp CCCCEESCSS--CSSCCCEEECTTTCCEEEEET-------TTTEEEEECSSSSCCEEECCCSSSC-------------SS
T ss_pred CCeeEEEeCC--CCCccEEEEeccCCEEEEEec-------CCCeEEEEccCCCceEEEEecCCcC-------------CC
Confidence 4333222111 112222333 578999742 2357899998754434333211110 11
Q ss_pred CCEEEEECCEEEEEEcCCCeEEEEeCCCCceE
Q 012701 353 PPLVAVVNNELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
|.++++..+.||+.....+.|.++|+.+++-.
T Consensus 587 P~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 587 PFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp CCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred ceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 22567788999999988889999998766543
No 239
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=90.96 E-value=17 Score=37.89 Aligned_cols=161 Identities=11% Similarity=-0.004 Sum_probs=92.6
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF 295 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~ 295 (458)
+++.+.|+.+..-...-+++.-+...+.+.. ++.||+.--. ...+.++++.....+.+...... .-...++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~------~~~I~r~~~~g~~~~~v~~~g~~-~P~GlAv 87 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS------LKTISRAFMNGSALEHVVEFGLD-YPEGMAV 87 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT------TTEEEEEETTSCSCEEEECSSCS-CCCEEEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC------CCeEEEEECCCCCcEEEEeCCCC-CcceEEE
Confidence 4577777776543333233222333344443 6799998442 36788899887665554332211 1122333
Q ss_pred --ECCEEEEEccccCCCCcccceEEEEECCCCceEEcC--CCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEE-c
Q 012701 296 --MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP--NMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAAD-Y 368 (458)
Q Consensus 296 --~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~g-g 368 (458)
.+++||+.-. ....|+++++....=+.+. .+..| ..+++- +|.||+.. |
T Consensus 88 D~~~~~LY~tD~-------~~~~I~v~~~dG~~~~~l~~~~l~~P-----------------~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 88 DWLGKNLYWADT-------GTNRIEVSKLDGQHRQVLVWKDLDSP-----------------RALALDPAEGFMYWTEWG 143 (628)
T ss_dssp ETTTTEEEEEET-------TTTEEEEEETTSTTCEEEECSSCCCE-----------------EEEEEETTTTEEEEEECS
T ss_pred EeCCCEEEEEEC-------CCCEEEEEecCCCcEEEEEeCCCCCc-----------------ccEEEccCCCeEEEeCCC
Confidence 3689999733 2357899998755433321 22222 156665 68999997 4
Q ss_pred CCCeEEEEeCCCCceEEec-cCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 369 ADMEVRKYDKERRLWFTIG-RLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 369 ~~~~v~~yd~~~~~W~~v~-~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
....|++.+++...-+.+. .+..+. ++++...+++||+.=.
T Consensus 144 ~~~~I~r~~~dG~~~~~l~~~~~~P~------GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 144 GKPKIDRAAMDGSERTTLVPNVGRAN------GLTIDYAKRRLYWTDL 185 (628)
T ss_dssp SSCEEEEEETTSCSCEEEECSCSSEE------EEEEETTTTEEEEEET
T ss_pred CCCEEEEEeCCCCceEEEECCCCCcc------eEEEccccCEEEEEEC
Confidence 4689999999877655543 332221 3444444688988753
No 240
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=90.93 E-value=17 Score=37.97 Aligned_cols=175 Identities=11% Similarity=0.002 Sum_probs=90.1
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCC-------CccCeEEEEeCCCCcE--EEcCCCCCC
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEG-------NILSSAEMYNSETQTW--KVLPSMKNP 287 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-------~~~~~v~~yd~~t~~W--~~~~~~p~~ 287 (458)
...++++|..+++......++.......+-.-+++.++++..+... .....++++++.++.- +.+...+..
T Consensus 146 ~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp CCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred eEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 3579999999988651112221111112222255555555543321 1245699999988753 233222222
Q ss_pred -CcceeEE-EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEE
Q 012701 288 -RKMCSGV-FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYA 365 (458)
Q Consensus 288 -r~~~~~~-~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv 365 (458)
....... .-+|+..++...... ....++.+|..+..|..+..-... .. ..+..++.+|+
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~---~~~~l~~~~~~~~~~~~l~~~~~~--~~--------------~~~~~~g~l~~ 286 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGW---SENDVYWKRPGEKDFRLLVKGVGA--KY--------------EVHAWKDRFYV 286 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETT---TEEEEEEECTTCSSCEEEEECSSC--CE--------------EEEEETTEEEE
T ss_pred CEEEEEEEECCCCCEEEEEEeCCC---CceEEEEEcCCCCceEEeecCCCc--eE--------------EEEecCCcEEE
Confidence 2222222 236765555443311 234678888777778776532111 11 23335677666
Q ss_pred EEc---CCCeEEEEeCCCCc---eEEeccCCCccCCCCcccEEEEEeCCEEEEEcC
Q 012701 366 ADY---ADMEVRKYDKERRL---WFTIGRLPERANSMNGWGLAFRACGDRLIVIGG 415 (458)
Q Consensus 366 ~gg---~~~~v~~yd~~~~~---W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG 415 (458)
... ....|+++|..+.. |+.+-.-..... -..+...++.|++...
T Consensus 287 ~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-----l~~~~~~~~~lv~~~~ 337 (695)
T 2bkl_A 287 LTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS-----LLSVSIVGGHLSLEYL 337 (695)
T ss_dssp EECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE-----EEEEEEETTEEEEEEE
T ss_pred EECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe-----EEEEEEECCEEEEEEE
Confidence 543 24789999997754 887743211110 0123334778777764
No 241
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=90.93 E-value=11 Score=36.58 Aligned_cols=178 Identities=12% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCceee--CCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC-----C-cEEEcCCC-CCCCcceeEEEEC
Q 012701 227 TNSWSS--GMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET-----Q-TWKVLPSM-KNPRKMCSGVFMD 297 (458)
Q Consensus 227 t~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-----~-~W~~~~~~-p~~r~~~~~~~~~ 297 (458)
.+.|+. ++..|..-..|+.+.+++.-|++|=.+++-....--..|-+.. . .=+.++.- -..-...+.-.++
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyYd 348 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKYYD 348 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEEET
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhC
Confidence 345643 4555555567888888888888887766543333333443321 1 12333322 2222334455789
Q ss_pred CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-------
Q 012701 298 GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD------- 370 (458)
Q Consensus 298 g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~------- 370 (458)
|+||++--... ....-..+.+-+..-..|..+.- |...... .| -.+..++.||+||...
T Consensus 349 gvLyLtTRgt~-~~~~GS~L~rs~d~Gq~w~slrf-p~nvHht----nl--------PFakvgD~l~mFgsERA~nEWE~ 414 (670)
T 3ju4_A 349 GVLYLITRGTR-GDRLGSSLHRSRDIGQTWESLRF-PHNVHHT----TL--------PFAKVGDDLIMFGSERAENEWEA 414 (670)
T ss_dssp TEEEEEEEESC-TTSCCCEEEEESSTTSSCEEEEC-TTCCCSS----CC--------CEEEETTEEEEEEECSSTTCSST
T ss_pred CEEEEEecCcC-CCCCcceeeeecccCCchhheec-ccccccc----CC--------CcceeCCEEEEEecccccccccc
Confidence 99999864331 12334557777777888998753 2221111 11 3678899999998411
Q ss_pred -----------CeE--EE-----EeCCCCceEEecc-CCCccCCCCcccEE-EEEeCCEE-EEEcCCCC
Q 012701 371 -----------MEV--RK-----YDKERRLWFTIGR-LPERANSMNGWGLA-FRACGDRL-IVIGGPKA 418 (458)
Q Consensus 371 -----------~~v--~~-----yd~~~~~W~~v~~-lp~~~~~~~~~~~a-~~~~~~~l-yv~GG~~~ 418 (458)
... .+ |..+.-+|..|.+ +-....-..+.|.. +++-++-| |+|||.+.
T Consensus 415 G~pD~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~ 483 (670)
T 3ju4_A 415 GAPDDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDH 483 (670)
T ss_dssp TCCCCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCS
T ss_pred CCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCccc
Confidence 111 12 3445567877742 21111111223443 44557776 58999763
No 242
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=90.87 E-value=10 Score=35.39 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=34.8
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEE-cCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKV-LPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++.+.+.|+.+ ..+.+||..+++-.. +... ...-.++++ -+++.++.||.+ ..+..||+....
T Consensus 87 ~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~d-------~~i~~wd~~~~~ 151 (343)
T 2xzm_R 87 ENCFAISSSWD------KTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAE-------REIKLWNILGEC 151 (343)
T ss_dssp STTEEEEEETT------SEEEEEETTSSCEEEEEECC--CSCEEEEEECSSTTEEEEEETT-------SCEEEEESSSCE
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEEEcCC--CCcEEEEEECCCCCEEEEEcCC-------CEEEEEeccCCc
Confidence 45566677755 468889998875422 1111 111112222 266677777755 357788886443
No 243
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=90.82 E-value=0.082 Score=54.75 Aligned_cols=35 Identities=9% Similarity=-0.037 Sum_probs=31.9
Q ss_pred CCCChhHHHHhhccc-CcccchhhhhccHhHHHHhc
Q 012701 107 QPIGRDNSISCLIRC-SRSDYGSIASLNQSFRSLIR 141 (458)
Q Consensus 107 ~~LP~dl~~~iL~rl-p~~~~~~l~~Vck~wr~lv~ 141 (458)
..||||++..||.+| |..+..+++.|||+|+.+..
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhh
Confidence 479999999999999 89999999999999998743
No 244
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=90.76 E-value=11 Score=37.65 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc--CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVL--PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++++|++-| +..++||..+++.... +.+| . .-++...+|++|++-|. ..++||..+++
T Consensus 158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~---------~y~rfd~~~~~ 217 (460)
T 1qhu_A 158 DEGILFFQG--------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGN---------QFLRFNPVSGE 217 (460)
T ss_dssp SSEEEEEET--------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETT---------EEEEECTTTCC
T ss_pred CCeEEEEec--------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECC---------EEEEEcCccCc
Confidence 678898877 4579999988765431 2233 2 23444568999999764 36789887653
Q ss_pred eEEcCCCCCC---------CCCC-------CCCCCCCCCc---CCCCEEEE-ECCEEEEEEcCCCeEEEEeCCCCceE--
Q 012701 327 WTEIPNMSPA---------RGGA-------ARGTEMPASA---EAPPLVAV-VNNELYAADYADMEVRKYDKERRLWF-- 384 (458)
Q Consensus 327 W~~i~~~p~~---------r~~~-------~~~~~~~~~~---~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~-- 384 (458)
= .+..|.. ..++ ......+..+ ..-.++.. .+|++|++-| +..|++|.....+.
T Consensus 218 v--~~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--~~yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 218 V--PPGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--SHYWRLDTNRDGWHSW 293 (460)
T ss_dssp C--CTTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--TEEEECTTGGGCCCCE
T ss_pred c--cCCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--CEEEEEecCCCCcCcc
Confidence 1 1122211 0000 0000111111 01124444 4789999954 78899987654331
Q ss_pred Ee----ccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 385 TI----GRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 385 ~v----~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
.| +.+|... -+| ...++++|+|=|.
T Consensus 294 ~Is~~WpglP~~I------DAA-f~~~~~~yfFkG~ 322 (460)
T 1qhu_A 294 PIAHQWPQGPSTV------DAA-FSWEDKLYLIQDT 322 (460)
T ss_dssp EGGGTCTTSCSSC------SEE-EEETTEEEEEETT
T ss_pred chhhhccCCCCCC------cEE-EEECCeEEEEeCC
Confidence 12 1334332 133 3457899999764
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=90.65 E-value=0.12 Score=50.41 Aligned_cols=142 Identities=21% Similarity=0.173 Sum_probs=59.6
Q ss_pred EEeCCEEEEEcCCCCCcCccceEEEEEcCCCc--eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 198 LAVGTELLVFGRELTAHHISHVIYRYSILTNS--WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 198 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
++.++.||+.+ ....++.+|..|++ |+.-. . ......++.++.+|+.++.+ ..+..+|..+
T Consensus 6 ~v~~~~v~~gs-------~dg~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d------g~l~a~d~~t 68 (369)
T 2hz6_A 6 TLPETLLFVST-------LDGSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND------GSLYTLGSKN 68 (369)
T ss_dssp --CTTEEEEEE-------TTSEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT------CCEEEC----
T ss_pred eeeCCEEEEEc-------CCCEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC------CEEEEEECCC
Confidence 34567777664 23468999998874 76533 1 11122234466778776543 4588899876
Q ss_pred C--cEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCCc
Q 012701 276 Q--TWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPASA 350 (458)
Q Consensus 276 ~--~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~~ 350 (458)
+ .|+.-...+... ..+.++ .++.||+ |+.+ ..++.+|+.+++ |+.-.. . ...
T Consensus 69 G~~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~d-------g~v~a~D~~tG~~~w~~~~~--~--~~~---------- 125 (369)
T 2hz6_A 69 NEGLTKLPFTIPELV-QASPCRSSDGILYM-GKKQ-------DIWYVIDLLTGEKQQTLSSA--F--ADS---------- 125 (369)
T ss_dssp -CCSEECSCCHHHHH-TTCSCC-----CCC-CEEE-------EEEEEECCC-----------------------------
T ss_pred CceeeeeeccCcccc-ccCceEecCCEEEE-EeCC-------CEEEEEECCCCcEEEEecCC--C--ccc----------
Confidence 5 466422211100 111122 4555554 3322 358889988654 653211 0 000
Q ss_pred CCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEE
Q 012701 351 EAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFT 385 (458)
Q Consensus 351 ~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~ 385 (458)
.+-.++.||+ +...+.+..||..+++ |+.
T Consensus 126 -----~~p~~~~v~~-~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 126 -----LSPSTSLLYL-GRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp ------------EEE-EEEEEEEECCCSSSSSCCCEE
T ss_pred -----ccccCCEEEE-EecCCEEEEEECCCCCEEEeE
Confidence 1113445554 4445678899987764 864
No 246
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=90.63 E-value=3.2 Score=40.58 Aligned_cols=142 Identities=11% Similarity=0.068 Sum_probs=70.6
Q ss_pred EEEEcCCCCCcCccceEEEEEcCCCc---eee--CCCC-CCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 204 LLVFGRELTAHHISHVIYRYSILTNS---WSS--GMRM-NAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 204 lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~--~~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
+++.|+. ...+.+||+.+.. +.. ...+ .....-..++.. ++.+++.|+.+ ..+.+||..+
T Consensus 196 ~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASD------DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECT------TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeC------CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 5556543 3568899988731 211 1111 111112222222 45677777654 5688999987
Q ss_pred Cc-EEEcCCCCCCCcceeEEEE--CC-EEEEEccccCCCCcccceEEEEECCCCc--eEEcCCCCCCCCCCCCCCCCCCC
Q 012701 276 QT-WKVLPSMKNPRKMCSGVFM--DG-KFYVIGGIGGSDSKVLTCGEEYDLETET--WTEIPNMSPARGGAARGTEMPAS 349 (458)
Q Consensus 276 ~~-W~~~~~~p~~r~~~~~~~~--~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~--W~~i~~~p~~r~~~~~~~~~~~~ 349 (458)
.. ...+..+.........+.+ ++ .+++.|+.+ ..|.+||+.+.. -..+.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d-------g~v~vwd~~~~~~~~~~~~~----h~~~--------- 323 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD-------KTVALWDLRNLKLKLHSFES----HKDE--------- 323 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETTCTTSCSEEEEC----CSSC---------
T ss_pred CCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC-------CeEEEEeCCCCCCCeEEeec----CCCC---------
Confidence 52 1111111111112222222 34 378887765 358889987632 111110 0111
Q ss_pred cCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCC
Q 012701 350 AEAPPLVAVV-NN-ELYAADYADMEVRKYDKER 380 (458)
Q Consensus 350 ~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~ 380 (458)
-..++.. ++ .+++.++..+.|.+||+.+
T Consensus 324 ---v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 324 ---IFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---EEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ---EEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 0022222 23 5788888889999999876
No 247
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=90.58 E-value=5 Score=38.90 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.+++.|+. ...+.+||..+.+-...-..+.......++.+ ++.+++.|+.+ ..+.+||..+++.
T Consensus 181 ~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~~ 248 (437)
T 3gre_A 181 EKSLLVALTN------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNVL 248 (437)
T ss_dssp SCEEEEEEET------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTEE
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCccE
Confidence 3666666643 45789999988654221111101111222223 56677777765 4588999988654
Q ss_pred EEcCCCCCCCcceeEEE-----ECCEEEEEccccCCCCcccceEEEEECCCCceEEc-CC---CCC-CCCCC--------
Q 012701 279 KVLPSMKNPRKMCSGVF-----MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI-PN---MSP-ARGGA-------- 340 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~-----~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i-~~---~p~-~r~~~-------- 340 (458)
...-..+....-.+.+. -++++++.|+.+ ..+.+||+.+.+-... .. .+. .....
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 321 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEEL 321 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGC
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCC-------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccc
Confidence 32111111111111111 135566666544 3678899887652211 10 000 00000
Q ss_pred -CCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 341 -ARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
..|. .. ...-.+++..++.+++.|+.++.|.+||..+.+
T Consensus 322 ~~~~~--~~-~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 322 NFCGI--RS-LNALSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CCCCC--CS-GGGGCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred eeccc--cc-CCceEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 0000 00 000113455588888999999999999998765
No 248
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=90.47 E-value=12 Score=38.95 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=73.2
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc-ceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK-MCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++.+++.|+.+ ..+.+||..++.-... +..... -.++++ -+++.++.|+.+ ..+.+||.....
T Consensus 441 ~g~~l~sgs~D------g~v~vwd~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D-------~~i~iwd~~~~~ 505 (694)
T 3dm0_A 441 DGQFALSGSWD------GELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRD-------RTIKLWNTLGEC 505 (694)
T ss_dssp TSSEEEEEETT------SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSSCEEEEETT-------SCEEEECTTSCE
T ss_pred CCCEEEEEeCC------CcEEEEECCCCcceeE--EeCCCCCEEEEEEeCCCCEEEEEeCC-------CEEEEEECCCCc
Confidence 56677777765 4688899987753221 111111 112222 256667777655 356778876543
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC--EEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEE
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN--ELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAF 403 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~--~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~ 403 (458)
-..+.......... -.+++.. ++ .+++.|+.++.|.+||..+..-... +.... +.-.++
T Consensus 506 ~~~~~~~~~~h~~~------------v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~--~~~h~----~~v~~v 567 (694)
T 3dm0_A 506 KYTISEGGEGHRDW------------VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST--LAGHT----GYVSTV 567 (694)
T ss_dssp EEEECSSTTSCSSC------------EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEE--ECCCS----SCEEEE
T ss_pred ceeeccCCCCCCCc------------EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEE--EcCCC----CCEEEE
Confidence 22222111111111 0012222 22 4667777889999999987654322 21111 111222
Q ss_pred EE-eCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 404 RA-CGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 404 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
.. .++++++.|+.+. .+.+|+...
T Consensus 568 ~~spdg~~l~sg~~Dg------~i~iwd~~~ 592 (694)
T 3dm0_A 568 AVSPDGSLCASGGKDG------VVLLWDLAE 592 (694)
T ss_dssp EECTTSSEEEEEETTS------BCEEEETTT
T ss_pred EEeCCCCEEEEEeCCC------eEEEEECCC
Confidence 22 3567777776543 356676643
No 249
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=90.46 E-value=12 Score=35.24 Aligned_cols=213 Identities=12% Similarity=0.121 Sum_probs=107.5
Q ss_pred CCcEEeCCCCC-CCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCC-CCCceeeEEE-eCCE
Q 012701 175 RRRWMHLPRMT-SNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMN-APRCLFGSAS-LGEI 251 (458)
Q Consensus 175 ~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~-~~~~ 251 (458)
-.+|..+.... .+.... ..+...++.+|+.|.. ..+++-+=.-.+|+.+.... .+-..+..+. -++.
T Consensus 65 G~tW~~~~~~~~~~~~~~---~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~ 134 (327)
T 2xbg_A 65 GQTWEPRTLVLDHSDYRF---NSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGS 134 (327)
T ss_dssp TSSCEECCCCCSCCCCEE---EEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTE
T ss_pred CCCCeECCCCCCCCCccE---EEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCC
Confidence 35898875322 111111 1233446788887621 24554222246899876431 2222233333 3678
Q ss_pred EEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEE-ECCCCceEE
Q 012701 252 AILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEY-DLETETWTE 329 (458)
Q Consensus 252 lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~y-d~~~~~W~~ 329 (458)
+|++|.. ..+++-.-.-.+|+.+.... +...+.++.. ++++|++|... .++.- |..-..|+.
T Consensus 135 ~~~~~~~-------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~G--------~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 135 AEMITNV-------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSRG--------SFYSTWEPGQTAWEP 198 (327)
T ss_dssp EEEEETT-------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETTS--------SEEEEECTTCSSCEE
T ss_pred EEEEeCC-------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECCC--------cEEEEeCCCCCceeE
Confidence 8887641 12333332345799886422 2233334333 56677665321 13333 333578998
Q ss_pred cCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECCEEEEEEcCCCeEEEEeCC-CCceEEecc--CCCccCCCCcccEEEEE
Q 012701 330 IPNMSPARGGAARGTEMPASAEAPPLVAV-VNNELYAADYADMEVRKYDKE-RRLWFTIGR--LPERANSMNGWGLAFRA 405 (458)
Q Consensus 330 i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~gg~~~~v~~yd~~-~~~W~~v~~--lp~~~~~~~~~~~a~~~ 405 (458)
+.. +...... .++. -++.+|+++. .+.+++.+.+ ..+|+.+.. ++... ++ .++..
T Consensus 199 ~~~-~~~~~~~--------------~~~~~~~g~~~~~~~-~G~~~~s~~D~G~tW~~~~~~~~~~~~----~~-~~v~~ 257 (327)
T 2xbg_A 199 HNR-TTSRRLH--------------NMGFTPDGRLWMIVN-GGKIAFSDPDNSENWGELLSPLRRNSV----GF-LDLAY 257 (327)
T ss_dssp EEC-CSSSCEE--------------EEEECTTSCEEEEET-TTEEEEEETTEEEEECCCBCTTSSCCS----CE-EEEEE
T ss_pred CCC-CCCCccc--------------eeEECCCCCEEEEeC-CceEEEecCCCCCeeEeccCCcccCCc----ce-EEEEe
Confidence 753 2222211 2332 2678887763 4567766433 678998752 22211 01 22322
Q ss_pred e-CCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEeec
Q 012701 406 C-GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLLAR 443 (458)
Q Consensus 406 ~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 443 (458)
. ++.+|++|+.. .+|.-.....+|+.+..
T Consensus 258 ~~~~~~~~~g~~g---------~i~~S~DgG~tW~~~~~ 287 (327)
T 2xbg_A 258 RTPNEVWLAGGAG---------ALLCSQDGGQTWQQDVD 287 (327)
T ss_dssp SSSSCEEEEESTT---------CEEEESSTTSSCEECGG
T ss_pred cCCCEEEEEeCCC---------eEEEeCCCCcccEEcCc
Confidence 2 56888887621 13444445579998863
No 250
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.36 E-value=12 Score=35.19 Aligned_cols=146 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC--CCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSWSSG--MRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~--~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
.++.||+.-. ..+.++++++....-+.+ ..+..|+ +.++. ++.||+.--. ....++++++..
T Consensus 89 ~~g~ly~~d~------~~~~I~~~~~dG~~~~~l~~~~~~~P~---giavdp~~g~ly~td~~-----~~~~I~r~~~dG 154 (318)
T 3sov_A 89 LGEKLYWTDS------ETNRIEVSNLDGSLRKVLFWQELDQPR---AIALDPSSGFMYWTDWG-----EVPKIERAGMDG 154 (318)
T ss_dssp TTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSSEE---EEEEEGGGTEEEEEECS-----SSCEEEEEETTS
T ss_pred CCCeEEEEEC------CCCEEEEEECCCCcEEEEEeCCCCCcc---EEEEeCCCCEEEEEecC-----CCCEEEEEEcCC
Confidence 3789998852 235788999876433332 2233332 33333 6899988411 135789999875
Q ss_pred CcEEEcCCCCCCCcce-eEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 276 QTWKVLPSMKNPRKMC-SGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 276 ~~W~~~~~~p~~r~~~-~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
..-+.+..- ..... ..++- +++||+.-. ....|+++|+....-+.+..- . ...
T Consensus 155 ~~~~~~~~~--~l~~Pnglavd~~~~~lY~aD~-------~~~~I~~~d~dG~~~~~~~~~---~------------~~~ 210 (318)
T 3sov_A 155 SSRFIIINS--EIYWPNGLTLDYEEQKLYWADA-------KLNFIHKSNLDGTNRQAVVKG---S------------LPH 210 (318)
T ss_dssp CSCEEEECS--SCSCEEEEEEETTTTEEEEEET-------TTTEEEEEETTSCSCEEEECS---C------------CSC
T ss_pred CCeEEEEEC--CCCCccEEEEeccCCEEEEEEC-------CCCEEEEEcCCCCceEEEecC---C------------CCC
Confidence 432222111 11122 33333 689999832 245789999875433333210 0 012
Q ss_pred CCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 353 PPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
|.++++.++.||+.....+.|.++|+.+++-
T Consensus 211 P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 211 PFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred ceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 2367888999999988889999999976553
No 251
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=90.26 E-value=11 Score=39.38 Aligned_cols=58 Identities=7% Similarity=-0.121 Sum_probs=32.7
Q ss_pred ceEEEEEcCCC---ceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC
Q 012701 218 HVIYRYSILTN---SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS 283 (458)
Q Consensus 218 ~~v~~yd~~t~---~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 283 (458)
..++++|..++ .-..+..... .......+-+++.++++. + ..++++|..+++...+..
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~~~-~~~~~~~SPDG~~la~~~-~------~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHGEG-FATDAKLSPKGGFVSFIR-G------RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCSSS-CEEEEEECTTSSEEEEEE-T------TEEEEEETTTTEEEECCC
T ss_pred CcEEEEECCCCCcceEEEcccCCc-ccccccCCCCCCEEEEEe-C------CcEEEEecCCCCEEEecc
Confidence 67999999887 5544433211 111111122444334432 1 379999999988776654
No 252
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=90.07 E-value=1.5 Score=40.49 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=69.9
Q ss_pred cceEEEEEcCCCceeeCCCCCCCC-ceeeEEE-eC-CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCC----Cc
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPR-CLFGSAS-LG-EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNP----RK 289 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~~~-~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~ 289 (458)
.+.+.+||+.+++-...-.++... .-...+. -+ ..+|+.+..+ ..+.+||+.+++-...-..+.+ ..
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 83 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS------ESLVKIDLVTGETLGRIDLSTPEERVKS 83 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT------TEEEEEETTTCCEEEEEECCBTTEEEEC
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC------CeEEEEECCCCCeEeeEEcCCccccccc
Confidence 457889999887653322222210 0122222 23 4788876532 5699999988864321111110 01
Q ss_pred ceeEEEE-CC-EEEEEccccC-CCCc---ccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCE
Q 012701 290 MCSGVFM-DG-KFYVIGGIGG-SDSK---VLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNE 362 (458)
Q Consensus 290 ~~~~~~~-~g-~lyv~GG~~~-~~~~---~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~ 362 (458)
....++. +| .||+.....+ .... ....+.+||+.+.+....-..... .. .++.. +++
T Consensus 84 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~--------------~~~~s~dg~ 147 (337)
T 1pby_B 84 LFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ--IT--------------MLAWARDGS 147 (337)
T ss_dssp TTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS--CC--------------CEEECTTSS
T ss_pred ccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC--cc--------------eeEECCCCC
Confidence 1223332 45 6676632100 0001 125789999988765432111111 11 23322 443
Q ss_pred -EEEEEcCCCeEEEEeCCCCceE
Q 012701 363 -LYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 363 -lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
||+. .+.+.+||+.+.+-.
T Consensus 148 ~l~~~---~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 148 KLYGL---GRDLHVMDPEAGTLV 167 (337)
T ss_dssp CEEEE---SSSEEEEETTTTEEE
T ss_pred EEEEe---CCeEEEEECCCCcEe
Confidence 5555 357888888776543
No 253
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=90.06 E-value=9.1 Score=34.21 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=77.2
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEE---------------cCCCceeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYS---------------ILTNSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEG 262 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd---------------~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~ 262 (458)
..+++|+|-|. .+|+++ +.+..|..++..+......-++. .++++|++-|
T Consensus 12 ~~ge~~fFk~~--------~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----- 78 (225)
T 3oyo_A 12 SEYEVYFFAKN--------KYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----- 78 (225)
T ss_dssp STTEEEEEETT--------EEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-----
T ss_pred CCCEEEEEECC--------EEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-----
Confidence 47899999653 366666 12334544443322223333333 4789999966
Q ss_pred CccCeEEEEeCCCC----cEEE--------cCCCCCC--CcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 263 NILSSAEMYNSETQ----TWKV--------LPSMKNP--RKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 263 ~~~~~v~~yd~~t~----~W~~--------~~~~p~~--r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
+..|+||..++ .-.. .+.+|.. ...--+|+. ++++|++-|. ..++||..++
T Consensus 79 ---~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~---------~yw~~d~~~~ 146 (225)
T 3oyo_A 79 ---NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN---------KYVRIAYDSK 146 (225)
T ss_dssp ---TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT---------EEEEEETTTT
T ss_pred ---CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC---------eEEEEECCCC
Confidence 46788876432 1111 1223321 112234433 7899999663 4688997766
Q ss_pred ceEEcC-----CCCCCCCCCCCCCCCCCCcCCCCEEEE--ECCEEEEEEcCCCeEEEEeCCC
Q 012701 326 TWTEIP-----NMSPARGGAARGTEMPASAEAPPLVAV--VNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 326 ~W~~i~-----~~p~~r~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
+...-+ ..|... + ...+.. ..++.. .++++|++-| +..|+||..+
T Consensus 147 ~~~~gPk~I~~~fpg~~-~----~~f~~~---iDAAf~~~~~g~~YfFkG--~~ywr~d~~~ 198 (225)
T 3oyo_A 147 QLVGNIRNIGDGFPVLN-G----TEFESG---IDACFASHKEPEAYLFKG--QNYVRIDFTP 198 (225)
T ss_dssp EEEEEEEEHHHHCGGGT-T----STTTTC---CSEEEECSSTTEEEEEET--TEEEEEECCT
T ss_pred eecCCCcchhhcCCCcc-c----ccCCCC---cCEEEEeCCCCEEEEEEC--CEEEEEeCCc
Confidence 544311 111110 0 000000 013333 3789999954 7899999983
No 254
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=89.87 E-value=10 Score=39.84 Aligned_cols=145 Identities=10% Similarity=-0.022 Sum_probs=81.9
Q ss_pred cceEEEEEcCC------C--ceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC---cEEEcCCCC
Q 012701 217 SHVIYRYSILT------N--SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ---TWKVLPSMK 285 (458)
Q Consensus 217 ~~~v~~yd~~t------~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~p 285 (458)
...++++|..+ . .++.+..-..... ......++.||+.+..+. ....++.+|..+. .|+.+-+-.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC
Confidence 56899999986 4 5776643222221 223335778888865432 2367899999876 488764322
Q ss_pred CCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCc-eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CC
Q 012701 286 NPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETET-WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NN 361 (458)
Q Consensus 286 ~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~ 361 (458)
........+.. +++|++....+ ....++++|+.+++ ...+.. + .+. ...+.. ++
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~-----g~~~l~~~~~~~g~~~~~l~~-~---~~~-------------v~~~~~s~d~ 391 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHD-----VKNTLQLHDLATGALLKIFPL-E---VGS-------------VVGYSGQKKD 391 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETTTCCEEEEECC-C---SSE-------------EEEEECCTTC
T ss_pred CCCeEEEEEEEcCCEEEEEEEEC-----CEEEEEEEECCCCCEEEecCC-C---Cce-------------EEEEecCCCC
Confidence 21122234455 77887776543 23468899986654 444432 2 111 011111 33
Q ss_pred -EEEEEE-c--CCCeEEEEeCCCCc--eEEec
Q 012701 362 -ELYAAD-Y--ADMEVRKYDKERRL--WFTIG 387 (458)
Q Consensus 362 -~lyv~g-g--~~~~v~~yd~~~~~--W~~v~ 387 (458)
.|++.. + ....++.||..+++ .+.+.
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred CEEEEEEeCCCCCCEEEEEECCCCccceEEee
Confidence 454442 2 22689999998877 66554
No 255
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=89.44 E-value=16 Score=35.23 Aligned_cols=107 Identities=8% Similarity=0.019 Sum_probs=59.1
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++.+++.|+.+ ..+.+||..+.+-...-..+........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 181 ~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-------g~i~iwd~~~~~ 247 (437)
T 3gre_A 181 EKSLLVALTNL------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-------GIIDIWDIRFNV 247 (437)
T ss_dssp SCEEEEEEETT------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-------SCEEEEETTTTE
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-------CeEEEEEcCCcc
Confidence 46777777755 4689999988753221111101112222222 67777877765 357889998765
Q ss_pred eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-----ECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 327 WTEIPNMSPARGGAARGTEMPASAEAPPLVAV-----VNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 327 W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
....-..+....-. .++. -++.+++.|+.++.|.+||..+.+
T Consensus 248 ~~~~~~~~~~~~v~--------------~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 248 LIRSWSFGDHAPIT--------------HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEEEEBCTTCEEEE--------------EEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEEEEecCCCCceE--------------EEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 43211111110000 1111 135577777777889999998765
No 256
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=89.39 E-value=11 Score=38.79 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=101.7
Q ss_pred eEEEEEeccceEEEEecC--CCcE-EeCCCCCCCccccccCceEEE-----eCCEEEEEcCCCCCcCccceEEEEEcCCC
Q 012701 157 HWVYFSCHLLEWEAFDPI--RRRW-MHLPRMTSNECFMCSDKESLA-----VGTELLVFGRELTAHHISHVIYRYSILTN 228 (458)
Q Consensus 157 ~~l~~~~~~~~~~~yDp~--~~~W-~~l~~~p~~~~~~~~~~~~~~-----~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 228 (458)
.++|+......+..||+. +.+- ..++.-..++ +..+. -|..+|+.. + ..+.+.++|..|.
T Consensus 209 r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~------~ia~s~~~~pDGk~l~v~n-~-----~~~~v~ViD~~t~ 276 (567)
T 1qks_A 209 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR------SIETSKMEGWEDKYAIAGA-Y-----WPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE------EEEECCSTTCTTTEEEEEE-E-----ETTEEEEEETTTC
T ss_pred CEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc------eeEEccccCCCCCEEEEEE-c-----cCCeEEEEECCCC
Confidence 356666656678899985 4322 1222111111 11122 134677664 2 4467888997775
Q ss_pred ceee-CC--CC--------CCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE-
Q 012701 229 SWSS-GM--RM--------NAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM- 296 (458)
Q Consensus 229 ~W~~-~~--~~--------p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~- 296 (458)
+=.. ++ .+ |.+|.....+..++..+++-- .....+++.|..+.....+..++..+.-|.+.+.
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~p 351 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 351 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeeeeeccccccCceECC
Confidence 4322 11 11 122332222222322333311 1135788888877655444444555555555433
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEE---c-CCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEc-C
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE---I-PNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADY-A 369 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~---i-~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg-~ 369 (458)
+|+.+++.-. ..+.|.++|+.+++-.. + ..+|.+..+. . ... .+.+|+... .
T Consensus 352 dgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~--------------~-~~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 352 SHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA--------------N-FVHPTFGPVWATSHMG 410 (567)
T ss_dssp TSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCE--------------E-EEETTTEEEEEEEBSS
T ss_pred CCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccce--------------e-eECCCCCcEEEeCCCC
Confidence 5554443322 23568899999886332 2 2344443332 2 233 367887764 3
Q ss_pred CCeEEEEeCCCC-----ceEEeccCCCc
Q 012701 370 DMEVRKYDKERR-----LWFTIGRLPER 392 (458)
Q Consensus 370 ~~~v~~yd~~~~-----~W~~v~~lp~~ 392 (458)
.+.|.++|..+. .|+.+..++..
T Consensus 411 ~~~Vsvid~~~~~~~~~~~kvv~~i~~~ 438 (567)
T 1qks_A 411 DDSVALIGTDPEGHPDNAWKILDSFPAL 438 (567)
T ss_dssp SSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred CCeEEEecCCCCCCccccCEEEEEEecC
Confidence 468999988763 39888766543
No 257
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=89.13 E-value=8.4 Score=40.26 Aligned_cols=147 Identities=14% Similarity=0.108 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++.+++.|+ ....|.+||..++.-...-.- +...-.+++. -++..++.|+.+ ..+.+||.....=.
T Consensus 441 ~g~~l~sgs------~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D------~~i~iwd~~~~~~~ 507 (694)
T 3dm0_A 441 DGQFALSGS------WDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSASRD------RTIKLWNTLGECKY 507 (694)
T ss_dssp TSSEEEEEE------TTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEETT------SCEEEECTTSCEEE
T ss_pred CCCEEEEEe------CCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEeCC------CEEEEEECCCCcce
Confidence 556666664 345789999987653221100 1111112222 245666777765 35777887654322
Q ss_pred EcC-CCCCCCcceeEEEE--CC--EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 280 VLP-SMKNPRKMCSGVFM--DG--KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 280 ~~~-~~p~~r~~~~~~~~--~g--~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
.+. .....+.....+.+ ++ .+++.|+.+ ..|.+||+.+.+-...- . ...+. -.
T Consensus 508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------~~v~vwd~~~~~~~~~~--~-~h~~~------------v~ 565 (694)
T 3dm0_A 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD-------KTVKVWNLSNCKLRSTL--A-GHTGY------------VS 565 (694)
T ss_dssp EECSSTTSCSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTCCEEEEE--C-CCSSC------------EE
T ss_pred eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC-------CeEEEEECCCCcEEEEE--c-CCCCC------------EE
Confidence 222 11112222222222 22 356666654 35788999876543211 1 11111 00
Q ss_pred EEEEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 355 LVAVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 355 ~~~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
+++.. ++.+++.|+.++.|.+||..+.+
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 22222 67788888889999999998775
No 258
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=89.01 E-value=4.6 Score=38.29 Aligned_cols=160 Identities=9% Similarity=-0.131 Sum_probs=73.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe-CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceee
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV-GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFG 244 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 244 (458)
..++.+|..+++-..+...+... ......- +++.+++............++++|+.+...+.+...........
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~~~~-----~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQENQWL-----GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp EEEEEEETTTCCEEEEEEESSCE-----EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred ceEEEEECCCCceEEeecCCccc-----cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 45777888877655443211110 1112223 44444443221111134579999998887776654332111111
Q ss_pred EEE-eCC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCC-----cceeEEEECCE-EEEEcccc-CCCCcccc
Q 012701 245 SAS-LGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR-----KMCSGVFMDGK-FYVIGGIG-GSDSKVLT 315 (458)
Q Consensus 245 ~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~~~~~~~g~-lyv~GG~~-~~~~~~~~ 315 (458)
.+. -++ .|+.+...++. ....++++|+.+++-+.+..++... .......-+|+ |++..... +.......
T Consensus 243 ~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGS--PDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEECTTSSCEEEEEEETTC--CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ceECCCCCEEEEEecCCCC--CcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 111 244 45444332221 1135999999999876664443200 00012233443 33221000 00011234
Q ss_pred eEEEEECCCCceEEcCC
Q 012701 316 CGEEYDLETETWTEIPN 332 (458)
Q Consensus 316 ~v~~yd~~~~~W~~i~~ 332 (458)
.++.+|+.+++-..+..
T Consensus 321 ~i~~~d~~~~~~~~l~~ 337 (388)
T 3pe7_A 321 FLYVFNMKNGTQHRVAR 337 (388)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred EEEEEeccCCceEEecc
Confidence 68999999887766653
No 259
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=88.98 E-value=5.8 Score=36.88 Aligned_cols=144 Identities=10% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++..++.|+ ....+.+||..+++-... +........++.+ ++.+++.|+.+ ..+.+||.....-
T Consensus 76 dg~~l~s~s------~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D------~~i~vwd~~~~~~ 141 (319)
T 3frx_A 76 DGAYALSAS------WDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD------KTIKVWTIKGQCL 141 (319)
T ss_dssp TSSEEEEEE------TTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT------SCEEEEETTSCEE
T ss_pred CCCEEEEEe------CCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeE
Confidence 455555554 345789999988753221 1111111122222 45677777765 3577788865543
Q ss_pred EEcCCCCCCCcceeEEEE-------CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcC
Q 012701 279 KVLPSMKNPRKMCSGVFM-------DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAE 351 (458)
Q Consensus 279 ~~~~~~p~~r~~~~~~~~-------~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~ 351 (458)
..+..... ........ ++.+++.|+.+ ..+..||+.+.+-... +.. ....
T Consensus 142 ~~~~~h~~--~v~~~~~~~~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~--~~~-h~~~----------- 198 (319)
T 3frx_A 142 ATLLGHND--WVSQVRVVPNEKADDDSVTIISAGND-------KMVKAWNLNQFQIEAD--FIG-HNSN----------- 198 (319)
T ss_dssp EEECCCSS--CEEEEEECCC------CCEEEEEETT-------SCEEEEETTTTEEEEE--ECC-CCSC-----------
T ss_pred EEEeccCC--cEEEEEEccCCCCCCCccEEEEEeCC-------CEEEEEECCcchhhee--ecC-CCCc-----------
Confidence 33221110 01111111 23355666654 3577888876543221 110 0111
Q ss_pred CCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 352 APPLVAVV-NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 352 ~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
-..++.. ++++++.|+.++.|.+||..+.+
T Consensus 199 -v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 199 -INTLTASPDGTLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp -EEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 0022222 67788888888999999998765
No 260
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=88.48 E-value=16 Score=34.19 Aligned_cols=152 Identities=11% Similarity=0.142 Sum_probs=79.2
Q ss_pred CCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCC-CCCC-cceeEEEECCEEEE
Q 012701 226 LTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSM-KNPR-KMCSGVFMDGKFYV 302 (458)
Q Consensus 226 ~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r-~~~~~~~~~g~lyv 302 (458)
.-.+|+.+. .+......++... .+.+|++|. . ..+++-.-.-.+|+.+... +.+. ....+++.++++|+
T Consensus 23 ~g~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~-~------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~ 94 (327)
T 2xbg_A 23 DYNPWEAIQ-LPTTATILDMSFIDRHHGWLVGV-N------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWI 94 (327)
T ss_dssp SSCCEEEEE-CSCSSCEEEEEESSSSCEEEEET-T------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEE
T ss_pred CCCCceEee-cCCCCcEEEEEECCCCcEEEEcC-C------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEE
Confidence 346788775 2333333333333 457788653 2 2243333334589998632 2222 23344456788888
Q ss_pred EccccCCCCcccceEEEEECCCCceEEcCCCC-CCCCCCCCCCCCCCCcCCCCEEE-EECCEEEEEEcCCCeEEEEeCCC
Q 012701 303 IGGIGGSDSKVLTCGEEYDLETETWTEIPNMS-PARGGAARGTEMPASAEAPPLVA-VVNNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 303 ~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p-~~r~~~~~~~~~~~~~~~~~~~~-~~~~~lyv~gg~~~~v~~yd~~~ 380 (458)
+|.. ..+++-+-.-.+|+.+.... .+.... .++ .-++.+|+++. .+.+++-.-..
T Consensus 95 ~g~~--------g~i~~S~DgG~tW~~~~~~~~~~~~~~--------------~i~~~~~~~~~~~~~-~g~v~~S~DgG 151 (327)
T 2xbg_A 95 VGEP--------PIMLHTTDGGQSWSQIPLDPKLPGSPR--------------LIKALGNGSAEMITN-VGAIYRTKDSG 151 (327)
T ss_dssp EEET--------TEEEEESSTTSSCEECCCCTTCSSCEE--------------EEEEEETTEEEEEET-TCCEEEESSTT
T ss_pred EECC--------CeEEEECCCCCCceECccccCCCCCeE--------------EEEEECCCCEEEEeC-CccEEEEcCCC
Confidence 7532 13444333357899986431 111111 333 34688888874 45577666567
Q ss_pred CceEEeccCCCccCCCCcccEEEEE-eCCEEEEEc
Q 012701 381 RLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIG 414 (458)
Q Consensus 381 ~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~G 414 (458)
.+|+.+....... . .++.. .++.+|++|
T Consensus 152 ~tW~~~~~~~~~~-----~-~~~~~~~~~~~~~~g 180 (327)
T 2xbg_A 152 KNWQALVQEAIGV-----M-RNLNRSPSGEYVAVS 180 (327)
T ss_dssp SSEEEEECSCCCC-----E-EEEEECTTSCEEEEE
T ss_pred CCCEEeecCCCcc-----e-EEEEEcCCCcEEEEE
Confidence 7999986422211 1 22222 356777666
No 261
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=88.31 E-value=22 Score=35.97 Aligned_cols=137 Identities=10% Similarity=0.047 Sum_probs=74.2
Q ss_pred ceEEEEEc--CCCceeeCCCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 218 HVIYRYSI--LTNSWSSGMRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 218 ~~v~~yd~--~t~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
..+|..+. .... ..+......+ ..+... ++.++++.+.. ..+.+||+.+++-+.+...+. .....
T Consensus 90 ~~l~~~~~~~~g~~-~~l~~~~~~~--~~~~s~dg~~~~~~s~~~------~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLEAVKPMR--ILSGVDTGEAVVFTGATE------DRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp EEEEEEETTSTTCC-EECTTSCSBE--EEEEEECSSCEEEEEECS------SCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred eEEEEEeccCCCcc-ccccCCCCce--eeeeCCCCCeEEEEecCC------CCceEEEccCCcEEEeecCCC---ceEEE
Confidence 45777777 4332 2333332222 223333 44555554432 223478998887766654332 22333
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCC--
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADYADM-- 371 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~-- 371 (458)
.-||+..++++.... ....++.+|+.+.+++.+..-.... . ..+.. +|+.++.....+
T Consensus 158 spDG~~la~~~~~~~---~~~~i~~~d~~~g~~~~l~~~~~~~--~--------------~~~~SpDG~~l~~~~~~~~~ 218 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGG---GRVSLFTSNLSSGGLRVFDSGEGSF--S--------------SASISPGMKVTAGLETAREA 218 (582)
T ss_dssp EEETTEEEEEEEEET---TEEEEEEEETTTCCCEEECCSSCEE--E--------------EEEECTTSCEEEEEECSSCE
T ss_pred CCCCCEEEEEEEcCC---CCeEEEEEcCCCCCceEeecCCCcc--c--------------cceECCCCCEEEEccCCCee
Confidence 457777666554311 1245999999999888765322111 1 12222 555444444444
Q ss_pred eEEEEeCCCCceEE
Q 012701 372 EVRKYDKERRLWFT 385 (458)
Q Consensus 372 ~v~~yd~~~~~W~~ 385 (458)
.|++||..+++.+.
T Consensus 219 ~i~~~d~~~~~~~~ 232 (582)
T 3o4h_A 219 RLVTVDPRDGSVED 232 (582)
T ss_dssp EEEEECTTTCCEEE
T ss_pred EEEEEcCCCCcEEE
Confidence 79999999888773
No 262
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=88.23 E-value=19 Score=34.61 Aligned_cols=81 Identities=10% Similarity=-0.029 Sum_probs=43.4
Q ss_pred CCEEEEEEc---------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeeEEEe
Q 012701 360 NNELYAADY---------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 360 ~~~lyv~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~lyv~GG~~~~~~~~~~~~~~ 429 (458)
+++||+... ..+.|+++|..+++= +..++..... +++++..-+. .+|+..+.. ..+.++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~~p---~~i~~s~Dg~~~l~v~~~~~------~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDV---DAISVAQDGGPDLYALSAGT------EVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCCCc---CeEEECCCCCeEEEEEcCCC------CeEEEE
Confidence 468999743 236899999877653 3333333221 3555544445 455544221 245666
Q ss_pred ecCCCCCCceEeec-cCCCceeeeEEE
Q 012701 430 VPSEGPPQWNLLAR-KQSANFVYNCAV 455 (458)
Q Consensus 430 ~~~~~~~~W~~l~~-~p~~~~~~~~~v 455 (458)
+. .+++.+.. .+.+..-+...+
T Consensus 347 D~----~t~~vv~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 347 DA----GAGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred EC----CCCCEEeeecCCCCCCcEEEE
Confidence 65 45666666 445544444333
No 263
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=88.04 E-value=11 Score=36.92 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=34.0
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-E-ECCEEEEEccccCCCCcccceEEEEECCC
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-F-MDGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
+.+++.|+.+ ..+.+||..++.-.. .... .......+ . -+|+.++.|+.+ ..+.+||+..
T Consensus 162 ~~~las~s~D------g~v~iwD~~~~~~~~-~~~~-~~~~v~~v~wspdg~~lasgs~d-------g~v~iwd~~~ 223 (434)
T 2oit_A 162 PSMVAVCLAD------GSIAVLQVTETVKVC-ATLP-STVAVTSVCWSPKGKQLAVGKQN-------GTVVQYLPTL 223 (434)
T ss_dssp TTEEEEEETT------SCEEEEEESSSEEEE-EEEC-GGGCEEEEEECTTSSCEEEEETT-------SCEEEECTTC
T ss_pred CCEEEEEECC------CeEEEEEcCCCccee-eccC-CCCceeEEEEcCCCCEEEEEcCC-------CcEEEEccCC
Confidence 5677777765 358889988773211 1111 11112222 2 267777777755 3578899873
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=87.39 E-value=3.1 Score=41.14 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=73.5
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEEE--CCE-EEEEccccCCCCcccceEEEEECCCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVFM--DGK-FYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
++.||++--. ..+.+||+.++..+.+.. .......+.+ +|+ |||.....+ .....+..++...
T Consensus 149 ~g~Lyv~d~~-------~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~---~~~~~v~~~~~~g- 214 (430)
T 3tc9_A 149 HNHLYLVGEQ-------HPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNN---NDRPNNYILTRES- 214 (430)
T ss_dssp EEEEEEEEBT-------EEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSC---TTSEEEEEEEGGG-
T ss_pred CCeEEEEeCC-------CcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCC---cccceEEEEeCCC-
Confidence 4789998331 678999999988877644 1122223333 444 888754321 1223456666533
Q ss_pred ceE---EcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCccc
Q 012701 326 TWT---EIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWG 400 (458)
Q Consensus 326 ~W~---~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~ 400 (458)
.|. .+..+..+. .+++. ++.||+.....+.|++||+.+..-..+..++..... .+
T Consensus 215 ~~~~~~~l~~~~~p~-----------------giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P---~g 274 (430)
T 3tc9_A 215 GFKVITELTKGQNCN-----------------GAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWE---FH 274 (430)
T ss_dssp TSCSEEEEEECSSCC-----------------CEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCC---EE
T ss_pred ceeeeeeeccCCCce-----------------EEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcc---ee
Confidence 232 222222211 34544 689999988788999999988765444333321110 13
Q ss_pred EEEEEeCCEEEEEc
Q 012701 401 LAFRACGDRLIVIG 414 (458)
Q Consensus 401 ~a~~~~~~~lyv~G 414 (458)
+++...++.||+.-
T Consensus 275 ia~~pdG~~lyv~d 288 (430)
T 3tc9_A 275 IQFHPSGNYAYIVV 288 (430)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEEcCCCCEEEEEE
Confidence 33333344577774
No 265
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=87.32 E-value=13 Score=34.14 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=73.0
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeCCEEEEE----cCCCC-------CcCccceEEEEEcCCCceeeCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVGTELLVF----GRELT-------AHHISHVIYRYSILTNSWSSGM 234 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~----GG~~~-------~~~~~~~v~~yd~~t~~W~~~~ 234 (458)
..+..||+. ++...+...............++.-++.||+. |-... .......|++||+.+++.+.+.
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 467778876 55554432211111111111122236788885 32110 0112457999999988887654
Q ss_pred CCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEE---EcCCCCCCCcceeEEEECCEEEEEccccCC
Q 012701 235 RMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWK---VLPSMKNPRKMCSGVFMDGKFYVIGGIGGS 309 (458)
Q Consensus 235 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~ 309 (458)
.... -.+.+.. +..||+....... .....+++||...+... .....+......-.+--+|+||+..+
T Consensus 186 --~~~~-p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~---- 257 (305)
T 3dr2_A 186 --DLDH-PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG---- 257 (305)
T ss_dssp --EESS-EEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS----
T ss_pred --cCCC-CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC----
Confidence 1111 1223332 3468887542110 11257889988765421 11111111111112223678887531
Q ss_pred CCcccceEEEEECCCCceEEcC
Q 012701 310 DSKVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 310 ~~~~~~~v~~yd~~~~~W~~i~ 331 (458)
..|.+||+.......+.
T Consensus 258 -----~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 -----TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp -----SEEEEECTTSCEEEEEE
T ss_pred -----CcEEEECCCCCEEEEEE
Confidence 24889999766555543
No 266
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=87.22 E-value=2.6 Score=43.08 Aligned_cols=140 Identities=12% Similarity=-0.081 Sum_probs=73.0
Q ss_pred EEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE-EECC
Q 012701 220 IYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV-FMDG 298 (458)
Q Consensus 220 v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~g 298 (458)
+.+||..++.-+.+...+. .. .+..-+++..++++.+... ...++++|+.++.++.+...+. .....+ .-||
T Consensus 134 ~~l~d~~~g~~~~l~~~~~--~~-~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~~~~--~~~~~~~SpDG 206 (582)
T 3o4h_A 134 VALYALDGGGLRELARLPG--FG-FVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDSGEG--SFSSASISPGM 206 (582)
T ss_dssp EEEEEEETTEEEEEEEESS--CE-EEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECCSSC--EEEEEEECTTS
T ss_pred ceEEEccCCcEEEeecCCC--ce-EEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeecCCC--ccccceECCCC
Confidence 4478998887766643332 22 2222344444444433221 2459999999999887753221 112222 2367
Q ss_pred EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeC
Q 012701 299 KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDK 378 (458)
Q Consensus 299 ~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~ 378 (458)
+.++.+... ....++.+|+.+++...+.......... .+... ......-+|.+++.+...+.+.+|+.
T Consensus 207 ~~l~~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 207 KVTAGLETA-----REARLVTVDPRDGSVEDLELPSKDFSSY-RPTAI------TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CEEEEEECS-----SCEEEEEECTTTCCEEECCCSCSHHHHH-CCSEE------EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CEEEEccCC-----CeeEEEEEcCCCCcEEEccCCCcChhhh-hhccc------cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 765543322 1247899999998877332211100000 00000 00002236678777777788889988
No 267
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=87.01 E-value=15 Score=32.01 Aligned_cols=152 Identities=12% Similarity=0.096 Sum_probs=78.6
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCC--cee--eC----CCCCCCCceeeEEEe--CCEEEEEeccCCCCCcc
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTN--SWS--SG----MRMNAPRCLFGSASL--GEIAILAGGSDLEGNIL 265 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~--~~----~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 265 (458)
+++.+++++|+|-|. .+|+++.... ... .+ +.+|.. --++... ++++|++-|
T Consensus 11 Ai~~~~g~~yfFkg~--------~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG-------- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKDG--------KYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------- 72 (195)
T ss_dssp EEEEETTEEEEEETT--------EEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET--------
T ss_pred EEEEeCCEEEEEECC--------EEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC--------
Confidence 345679999999654 4777776542 111 11 233421 1122222 678999977
Q ss_pred CeEEEEeCCCCcE-EEcCC--CCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTW-KVLPS--MKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 340 (458)
Q Consensus 266 ~~v~~yd~~t~~W-~~~~~--~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~ 340 (458)
+..++|+..+-.- +.+.. +|......-+|+. ++++|++-|. ..+.||..+++=.. .-|..-...
T Consensus 73 ~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~~~~--gyPr~i~~~ 141 (195)
T 1itv_A 73 RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDP--RSASEVDRM 141 (195)
T ss_dssp TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECG--GGCEEHHHH
T ss_pred CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC---------EEEEEeCCcccccC--CCccChhhc
Confidence 4567776542111 11111 2322122334433 7899999653 46899987754211 011100000
Q ss_pred CCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 341 ARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
-+|..- ...++...++.+|.+-| ...++||..+..=
T Consensus 142 w~Gvp~-----~idaa~~~~g~~Yffkg--~~y~~~~~~~~~v 177 (195)
T 1itv_A 142 FPGVPL-----DTHDVFQFREKAYFCQD--RFYWRVSSRSELN 177 (195)
T ss_dssp STTSCS-----SCSEEEEETTEEEEEET--TEEEEEECCTTCC
T ss_pred CCCCCC-----CCCEEEEeCCeEEEEeC--CEEEEEECCccEE
Confidence 000000 00145666899999955 7899999877653
No 268
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=86.81 E-value=0.42 Score=46.40 Aligned_cols=145 Identities=8% Similarity=-0.016 Sum_probs=59.8
Q ss_pred EEeCCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECC
Q 012701 246 ASLGEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLE 323 (458)
Q Consensus 246 ~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~ 323 (458)
++.++.||+.+. + ..+..+|..+++ |+.-. .......++.++++|+.++.+ ..++.+|.+
T Consensus 6 ~v~~~~v~~gs~-d------g~v~a~d~~tG~~~W~~~~----~~~~s~p~~~~g~~~v~~s~d-------g~l~a~d~~ 67 (369)
T 2hz6_A 6 TLPETLLFVSTL-D------GSLHAVSKRTGSIKWTLKE----DPVLQVPTHVEEPAFLPDPND-------GSLYTLGSK 67 (369)
T ss_dssp --CTTEEEEEET-T------SEEEEEETTTCCEEEEEEC----CCSCCCC-----CCEEECTTT-------CCEEEC---
T ss_pred eeeCCEEEEEcC-C------CEEEEEECCCCCEEEEecC----CCceecceEcCCCEEEEeCCC-------CEEEEEECC
Confidence 345667776532 2 468999998875 87643 111223345677788886543 247889986
Q ss_pred CC--ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc--eEEeccCCCccCCCCcc
Q 012701 324 TE--TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL--WFTIGRLPERANSMNGW 399 (458)
Q Consensus 324 ~~--~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~--W~~v~~lp~~~~~~~~~ 399 (458)
+. .|..-...+...... + +...++.||+ |...+.++.+|..+++ |+.-..- .
T Consensus 68 tG~~~w~~~~~~~~~~~~s-------------p-~~~~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~--~------- 123 (369)
T 2hz6_A 68 NNEGLTKLPFTIPELVQAS-------------P-CRSSDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAF--A------- 123 (369)
T ss_dssp --CCSEECSCCHHHHHTTC-------------S-CC-----CCC-CEEEEEEEEECCC----------------------
T ss_pred CCceeeeeeccCccccccC-------------c-eEecCCEEEE-EeCCCEEEEEECCCCcEEEEecCCC--c-------
Confidence 54 465321111110111 0 1113455543 4445678888887654 6432211 0
Q ss_pred cEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceE
Q 012701 400 GLAFRACGDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNL 440 (458)
Q Consensus 400 ~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 440 (458)
..++..++.||+.+ . ...+.+|+...+...|+.
T Consensus 124 -~~~~p~~~~v~~~~-~------dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 124 -DSLSPSTSLLYLGR-T------EYTITMYDTKTRELRWNA 156 (369)
T ss_dssp ----------EEEEE-E------EEEEECCCSSSSSCCCEE
T ss_pred -ccccccCCEEEEEe-c------CCEEEEEECCCCCEEEeE
Confidence 01112445555432 1 135667777766677875
No 269
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=86.80 E-value=17 Score=37.28 Aligned_cols=145 Identities=10% Similarity=0.051 Sum_probs=77.7
Q ss_pred EEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEc
Q 012701 204 LLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQTWKVL 281 (458)
Q Consensus 204 lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 281 (458)
+++.|+. ...+.+||..+.+... .+..-.....++.+ ++.+++.|+.+ ..+.+||..+++-...
T Consensus 162 ~l~s~s~------D~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D------~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 162 RIISGSD------DNTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGD------GTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEEEET------TSCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEE
T ss_pred EEEEEeC------CCeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECC------CcEEEEECCCCcEeee
Confidence 4555543 3467888876644322 12111111222222 56777788866 4588899887764332
Q ss_pred C-C--C---CCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 282 P-S--M---KNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 282 ~-~--~---p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
- . + .....-.++++. ++++++.|+.+ ..+..||+.+.+....-......... .
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D-------~~v~lWd~~~~~~~~~~~~~~~~~~~-------------~ 287 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-------KTIKIWNVATLKVEKTIPVGTRIEDQ-------------Q 287 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSGGGC-------------E
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCC-------CeEEEEeCCCCceeeeecCCCCccce-------------e
Confidence 1 1 0 011111122222 67777777765 46888999887654321111111000 0
Q ss_pred EEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 355 LVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 355 ~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
..+..++..++.++..+.+..||+.+..
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~ 315 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGS 315 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence 2334467777777788899999988765
No 270
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=86.32 E-value=28 Score=34.58 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=78.2
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcC---------CCceeeCCCCCCCCceeeEE-E--eCCEEEEEeccCCCCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSIL---------TNSWSSGMRMNAPRCLFGSA-S--LGEIAILAGGSDLEGN 263 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~---------t~~W~~~~~~p~~r~~~~~~-~--~~~~lyv~GG~~~~~~ 263 (458)
+++.+.+++|+|-|. .+|+++.. +..|..+ |.. .-++ . .++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~--------~~wr~~~~~~~~~p~~I~~~Wp~L---P~~---iDAa~~~~~~g~~~fFKg------ 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR--------FYMRTNPFYPEVELNFISVFWPQL---PNG---LEAAYEFADRDEVRFFKG------ 326 (450)
T ss_dssp EEEEETTEEEEEETT--------EEEECCTTSSSCEEEEGGGTCTTS---CSS---CCEEEEEGGGTEEEEEET------
T ss_pred eEEecCCeEEEEeCC--------EEEEEcCCCCcccceehhHhccCC---CCC---eeEEEEEcCCCeEEEEeC------
Confidence 456689999999664 34555543 3334333 321 2222 2 2689999966
Q ss_pred ccCeEEEEeCCCCc--E-EEcC---CCCCCCcceeEE-EE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCC
Q 012701 264 ILSSAEMYNSETQT--W-KVLP---SMKNPRKMCSGV-FM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMS 334 (458)
Q Consensus 264 ~~~~v~~yd~~t~~--W-~~~~---~~p~~r~~~~~~-~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p 334 (458)
+..|+|+..+-. + +.+. -+|.....--+| .. ++++|+|-| +..|+||..+++-. +.-|
T Consensus 327 --~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG---------~~yw~yd~~~~~~~--~gYP 393 (450)
T 1su3_A 327 --NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA---------NKYWRYDEYKRSMD--PGYP 393 (450)
T ss_dssp --TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET---------TEEEEEETTTTEEC--SSCS
T ss_pred --CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC---------CEEEEEeCCCcccc--CCCC
Confidence 456777643210 0 1111 122211122233 33 689999965 24789998754321 1111
Q ss_pred CCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 335 PARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 335 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
..-...-+|.... ..++...++++|.+-| +..|+||..+++=..+
T Consensus 394 k~I~~~fpgip~~-----iDAA~~~~g~~YFFkg--~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 394 KMIAHDFPGIGHK-----VDAVFMKDGFFYFFHG--TRQYKFDPKTKRILTL 438 (450)
T ss_dssp EEHHHHSTTSCSC-----CSEEEEETTEEEEEET--TEEEEEETTTTEEEEE
T ss_pred cchhhcCCCCCCC-----ccEEEEcCCeEEEEeC--CEEEEEECCcceEecc
Confidence 1110000111100 0144557899999954 7899999887765443
No 271
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=85.66 E-value=27 Score=33.86 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=52.5
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe--CCEEEEEcCCCC---CcCccceEEEEEcCCCceeeCCCCCC-C
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV--GTELLVFGRELT---AHHISHVIYRYSILTNSWSSGMRMNA-P 239 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~--~~~lyv~GG~~~---~~~~~~~v~~yd~~t~~W~~~~~~p~-~ 239 (458)
..+..+|+.+++-... ++.... .+ ++.. +..+|+...... .....+.|.++|+.|++-..--+++. .
T Consensus 59 ~~V~ViD~~t~~v~~~--I~vG~~----P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~ 131 (386)
T 3sjl_D 59 TQQFVIDGEAGRVIGM--IDGGFL----PN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP 131 (386)
T ss_dssp EEEEEEETTTTEEEEE--EEECSS----CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CEEEEEECCCCeEEEE--EECCCC----Cc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc
Confidence 4678899988764321 111111 01 1222 456888742100 00134679999999987432111111 1
Q ss_pred C-----ceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 240 R-----CLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 240 r-----~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
| .-+..+. .+.++||.... ..+.+.++|..+++=
T Consensus 132 r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 132 RFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp CCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred ccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence 1 2223333 35688987321 136799999998863
No 272
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=85.60 E-value=22 Score=32.86 Aligned_cols=103 Identities=7% Similarity=-0.098 Sum_probs=54.1
Q ss_pred cceEEEEEcCCCce-eeCCCCCCCCceeeEEEeCCEEEEEeccCCCCC--c-cCeEEEEeCCCCcEEEcCCCCCCCccee
Q 012701 217 SHVIYRYSILTNSW-SSGMRMNAPRCLFGSASLGEIAILAGGSDLEGN--I-LSSAEMYNSETQTWKVLPSMKNPRKMCS 292 (458)
Q Consensus 217 ~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~-~~~v~~yd~~t~~W~~~~~~p~~r~~~~ 292 (458)
...++++|+.+++. +.+.. + .....+...+.+++.+..+.... . ...++.+| +++++.+..- ....
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~ 220 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFY 220 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEE
T ss_pred cceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEeccC----ccee
Confidence 45799999998877 55544 2 11222222332555554332111 2 35788888 7777766432 1222
Q ss_pred EEEECCEEEEEccccCC-CCcccceEEEEECCCCceEEcC
Q 012701 293 GVFMDGKFYVIGGIGGS-DSKVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 293 ~~~~~g~lyv~GG~~~~-~~~~~~~v~~yd~~~~~W~~i~ 331 (458)
...-+|+.+++.+.... .......++.+| +.++..+.
T Consensus 221 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 258 (347)
T 2gop_A 221 AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL 258 (347)
T ss_dssp EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS
T ss_pred eECCCCCEEEEEEccccCCccccceEEEEC--CCceEecc
Confidence 23557764444443211 111235788898 66666654
No 273
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=85.46 E-value=21 Score=39.47 Aligned_cols=140 Identities=17% Similarity=0.081 Sum_probs=74.7
Q ss_pred ceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEE-EEeCCCCcEEEcCCCCCCCcceeEEE-
Q 012701 218 HVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAE-MYNSETQTWKVLPSMKNPRKMCSGVF- 295 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~-~yd~~t~~W~~~~~~p~~r~~~~~~~- 295 (458)
..+++++..+.....+...+..+....... +++.+++++. ...++ +||..++.-..+. .........+.
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~S 387 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVD 387 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECC--CCCCSEEEEEEC
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEec--CCccceeeeEEC
Confidence 467888887776655433222111112222 4444444332 24788 8999988776665 22112222222
Q ss_pred ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCC-----
Q 012701 296 MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYAD----- 370 (458)
Q Consensus 296 ~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~----- 370 (458)
-+|+.++++... ..++.||+.+++-..+..-....... ....-+++.+++++..
T Consensus 388 pDG~~la~~~~~-------~~v~~~d~~tg~~~~~~~~~~~~v~~--------------~~~SpDG~~la~~~~~~~~~~ 446 (1045)
T 1k32_A 388 RNGKFAVVANDR-------FEIMTVDLETGKPTVIERSREAMITD--------------FTISDNSRFIAYGFPLKHGET 446 (1045)
T ss_dssp TTSSEEEEEETT-------SEEEEEETTTCCEEEEEECSSSCCCC--------------EEECTTSCEEEEEEEECSSTT
T ss_pred CCCCEEEEECCC-------CeEEEEECCCCceEEeccCCCCCccc--------------eEECCCCCeEEEEecCccccc
Confidence 367766665533 37889999988766553211111111 1222256555544322
Q ss_pred -----CeEEEEeCCCCceEEec
Q 012701 371 -----MEVRKYDKERRLWFTIG 387 (458)
Q Consensus 371 -----~~v~~yd~~~~~W~~v~ 387 (458)
..|++||..+++...+.
T Consensus 447 ~~~~~~~i~l~d~~~g~~~~l~ 468 (1045)
T 1k32_A 447 DGYVMQAIHVYDMEGRKIFAAT 468 (1045)
T ss_dssp CSCCEEEEEEEETTTTEEEECS
T ss_pred cCCCCCeEEEEECCCCcEEEee
Confidence 48999999988755554
No 274
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=85.09 E-value=38 Score=35.05 Aligned_cols=169 Identities=15% Similarity=0.073 Sum_probs=97.4
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
++.||+.-- ..+.|+++++.....+.+..-...+ -.+.++ .++.||+.-. ....+++.++....-
T Consensus 360 ~~~ly~sD~------~~~~I~r~~~~g~~~~~v~~~~~~~-p~GlAvD~~~~~lY~tD~------~~~~I~v~~~~G~~~ 426 (619)
T 3s94_A 360 EGYIYWTDD------EVRAIRRSFIDGSGSQFVVTAQIAH-PDGIAVDWVARNLYWTDT------GTDRIEVTRLNGTMR 426 (619)
T ss_dssp TTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSC-CCEEEEETTTTEEEEEET------TTTEEEEEETTSCSC
T ss_pred CCeEEEEeC------CCCeEEEEEcCCCccEEEEECCCCC-cCceEEecccCcEEEEeC------CCCcEEEEeCCCCeE
Confidence 588998852 3457999999876665543221111 124444 3789999832 236788998876644
Q ss_pred EEcC--CCCCCCcceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCC
Q 012701 279 KVLP--SMKNPRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPP 354 (458)
Q Consensus 279 ~~~~--~~p~~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~ 354 (458)
+.+. .+..|| +.++. +|.||+.--. ....|++.++.-..=+.+.. ... ..|.
T Consensus 427 ~~l~~~~l~~P~---~iavdp~~G~ly~tD~g------~~~~I~r~~~dG~~~~~l~~---~~l------------~~P~ 482 (619)
T 3s94_A 427 KILISEDLEEPR---AIVLDPMVGYMYWTDWG------EIPKIERAALDGSDRVVLVN---TSL------------GWPN 482 (619)
T ss_dssp EEEECTTCCSEE---EEEEETTTTEEEEEECS------SSCEEEEEETTSCSCEEEEC---SSC------------SCEE
T ss_pred EEEEECCCCCee---eEEEEcCCCcEEEecCC------CCCEEEEEccCCCccEEEEe---CCC------------CCCe
Confidence 4443 222222 23343 5899987311 12357778775433222211 000 1122
Q ss_pred EEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEec--cCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 355 LVAVV--NNELYAADYADMEVRKYDKERRLWFTIG--RLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 355 ~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~--~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
.+++- +++||+.....+.|+++|+....=+.+. .++.+ ++ +++.++.||+.-
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P------~g--lav~~~~ly~tD 538 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHI------FG--FTLLGDYVYWTD 538 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSS------CC--EEEETTEEEEEC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCc------EE--EEEECCEEEEee
Confidence 45554 6899999988899999998765433332 23222 23 455788999985
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=84.94 E-value=21 Score=35.18 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCce-eeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCC--C
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNILSSAEMYNSE--T 275 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~--t 275 (458)
++.||+.-. ..+.|++||+.+++- ..+.........+..+.. ++.||+.-- ..+.+.+++.. +
T Consensus 239 ~G~lyv~d~------~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~------~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 239 NGKIYYTRY------HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN------GKHCIYRVDYNRET 306 (433)
T ss_dssp TCCEEECBT------TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET------TTTEEEEEEBCTTT
T ss_pred CCeEEEEEC------CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC------CCCEEEEEeCCCCC
Confidence 577887742 335799999987765 222111111112233333 446999832 23678886654 3
Q ss_pred CcEE----EcCCCCC----------CC-ccee-EEE----------ECCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 276 QTWK----VLPSMKN----------PR-KMCS-GVF----------MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 276 ~~W~----~~~~~p~----------~r-~~~~-~~~----------~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
+... ....... .+ .... +++ -+|.|||.-. ....|.++++ +.....
T Consensus 307 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~-------~n~~I~~~~~-~G~v~t 378 (433)
T 4hw6_A 307 GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR-------DSHTVRVLTP-EGRVTT 378 (433)
T ss_dssp CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET-------TTTEEEEECT-TSEEEE
T ss_pred cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC-------CCCEEEEECC-CCCEEE
Confidence 3221 1111000 01 1122 333 3568998732 2356888887 445555
Q ss_pred cCCCCCC-CCCCCCC-CCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCC
Q 012701 330 IPNMSPA-RGGAARG-TEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKE 379 (458)
Q Consensus 330 i~~~p~~-r~~~~~~-~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~ 379 (458)
+...... ..+...| ....+....|..+++- ++.||+....+..|.+++++
T Consensus 379 ~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 379 YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 4422110 0111111 1112222334467777 78999999888899999875
No 276
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=84.90 E-value=26 Score=32.85 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=36.9
Q ss_pred EEE-ECCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEE-eCCEEEEEcCC
Q 012701 356 VAV-VNNELYAADYADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRA-CGDRLIVIGGP 416 (458)
Q Consensus 356 ~~~-~~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~-~~~~lyv~GG~ 416 (458)
+++ -+|.||+.....+.|.+||+++++...+...|... +-.+++. -+++|||....
T Consensus 253 ia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~-----~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 253 ISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLS-----WTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGS-----CEEEEEECTTSCEEEEECC
T ss_pred EEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCcee-----cCCeeEECCCCcEEEEeCc
Confidence 443 37899999888899999999667777665444211 1123333 36789998753
No 277
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=84.79 E-value=17 Score=38.19 Aligned_cols=144 Identities=10% Similarity=0.040 Sum_probs=81.6
Q ss_pred cceEEEEEcCCC--ceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCC---cEEEcCCCCCCCcce
Q 012701 217 SHVIYRYSILTN--SWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQ---TWKVLPSMKNPRKMC 291 (458)
Q Consensus 217 ~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~~~~p~~r~~~ 291 (458)
.+.+|++|..+. .|+.+..-...... .....++.||+....+. ....+..+|+.+. .|+.+-+-.... .
T Consensus 258 ~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~ 331 (693)
T 3iuj_A 258 GNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQV--L 331 (693)
T ss_dssp CCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSC--E
T ss_pred CcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCE--E
Confidence 358999998776 67776432222221 23445889988876543 2367899998874 387754322221 2
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE----C-CEEEEE
Q 012701 292 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV----N-NELYAA 366 (458)
Q Consensus 292 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~----~-~~lyv~ 366 (458)
.....++.|++....+ ....++++|+.......+. +|... . +..+ + +.|++.
T Consensus 332 ~~s~~g~~lv~~~~~~-----g~~~l~~~d~~g~~~~~l~-~p~~~--~---------------~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVD-----ATARVEQFDYEGKRVREVA-LPGLG--S---------------VSGFNGKHDDPALYFG 388 (693)
T ss_dssp EEEEETTEEEEEEEET-----TEEEEEEECTTSCEEEEEC-CSSSS--E---------------EEECCCCTTCSCEEEE
T ss_pred EEEEECCEEEEEEEEC-----CeeEEEEEECCCCeeEEee-cCCCc--e---------------EEeeecCCCCCEEEEE
Confidence 3334566665543322 2346889999876555553 22211 1 1111 2 334443
Q ss_pred E-c--CCCeEEEEeCCCCceEEeccC
Q 012701 367 D-Y--ADMEVRKYDKERRLWFTIGRL 389 (458)
Q Consensus 367 g-g--~~~~v~~yd~~~~~W~~v~~l 389 (458)
. . ....++.||..+++++.+...
T Consensus 389 ~ss~~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 389 FENYAQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp EECSSSCCEEEEECTTTCCEEEEECC
T ss_pred ecCCCCCCEEEEEECCCCeEEEEEeC
Confidence 2 2 126899999998888777543
No 278
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=84.65 E-value=22 Score=31.98 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=55.4
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARG 343 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~ 343 (458)
..+.++|..+++-...-.+......-..+. -++++++.|+.+ ..+..||..+.+-...-. ......
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-------g~v~iw~~~~~~~~~~~~--~h~~~~--- 112 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRNMT--SHSARV--- 112 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEE--CCSSCE---
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-------CcEEEeecCCceeEEEec--CccceE---
Confidence 468999999987655433322222222222 367888888765 367889998876432211 101111
Q ss_pred CCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCce
Q 012701 344 TEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRLW 383 (458)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~W 383 (458)
.....++.+.+.|+....+..++..+...
T Consensus 113 -----------~~~~~~~~~l~s~~~~~~~~~~~~~~~~~ 141 (318)
T 4ggc_A 113 -----------GSLSWNSYILSSGSRSGHIHHHDVRVAEH 141 (318)
T ss_dssp -----------EEEEEETTEEEEEETTSEEEEEETTSSSC
T ss_pred -----------EEeecCCCEEEEEecCCceEeeecCCCce
Confidence 23444566777777778888888766543
No 279
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=83.91 E-value=35 Score=33.60 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=51.9
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEe---CCEEEEEcCCC---CCcCccceEEEEEcCCCceeeCCCCC-C
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAV---GTELLVFGREL---TAHHISHVIYRYSILTNSWSSGMRMN-A 238 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~---~~~lyv~GG~~---~~~~~~~~v~~yd~~t~~W~~~~~~p-~ 238 (458)
..+..+|+.+.+=..- ++.... .. +++ +..|||.--.. ......+.|.++|+.|++-..--+++ .
T Consensus 99 ~~VsVID~~t~~vv~~--I~vG~~-----Pg-ia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~ 170 (426)
T 3c75_H 99 TQQFVIDGSTGRILGM--TDGGFL-----PH-PVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDA 170 (426)
T ss_dssp EEEEEEETTTTEEEEE--EEECSS-----CE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CeEEEEECCCCEEEEE--EECCCC-----Cc-eEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCc
Confidence 4678899888754321 111111 01 222 45677763100 00013567999999998643211111 1
Q ss_pred CC-----ceeeEEE--eCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 239 PR-----CLFGSAS--LGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 239 ~r-----~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
+| .-+..++ -+.++||..-. ..+.+.++|..+++=
T Consensus 171 ~r~~~g~~P~~~~~spDGk~lyV~n~~-----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 171 PRFLVGTYQWMNALTPDNKNLLFYQFS-----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp CCCCBSCCGGGSEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred cccccCCCcceEEEcCCCCEEEEEecC-----CCCeEEEEECCCCeE
Confidence 11 1123333 35688888321 136799999998864
No 280
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=83.88 E-value=32 Score=33.11 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=78.6
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCCC---------ceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCCCc
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILTN---------SWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEGNI 264 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 264 (458)
+++.+++++|+|-|. .+|+++.... .|. .||. ... ++... ++++|+|-|
T Consensus 185 Av~~~~g~~~fFkg~--------~~Wr~~~~~~~~~p~~I~~~wp---gLP~-~iD-Aa~~~~~~g~~~fFkg------- 244 (365)
T 3ba0_A 185 AVTTVGNKIFFFKDR--------FFWLKVSERPKTSVNLISSLWP---TLPS-GIE-AAYEIEARNQVFLFKD------- 244 (365)
T ss_dssp CEEEETTEEEEEETT--------EEEECCSSCCCCCEEEHHHHCS---SCCS-SCC-EEEEEGGGTEEEEEET-------
T ss_pred eEEEcCCeEEEEeCC--------EEEEEcCCCccCCccchhhhcc---CCCC-Ccc-EEEEecCCCEEEEEeC-------
Confidence 455679999999654 4666654332 232 2332 111 22222 789999966
Q ss_pred cCeEEEEeCCCCc--E-EEcCC--CCCCCcceeEE-EE--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC
Q 012701 265 LSSAEMYNSETQT--W-KVLPS--MKNPRKMCSGV-FM--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA 336 (458)
Q Consensus 265 ~~~v~~yd~~t~~--W-~~~~~--~p~~r~~~~~~-~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~ 336 (458)
+..|+|+..+-. + +.+.. +|.....--+| .. ++++|+|-|. ..++||..+++-. +.-|..
T Consensus 245 -~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~---------~yw~yd~~~~~v~--~gyPk~ 312 (365)
T 3ba0_A 245 -DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN---------QYWRYDERRQMMD--PGYPKL 312 (365)
T ss_dssp -TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEEC--SSCCCC
T ss_pred -CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC---------EEEEEeCCcceec--CCCCcc
Confidence 456777643211 1 22322 23211122333 33 5899999652 4789998765321 111211
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 337 RGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
-...-+|.... ..++... ++++|.+-| +..|+||..+++-..
T Consensus 313 I~~~f~g~p~~-----iDaA~~~~~g~~YfFkg--~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 313 ITKNFQGIGPK-----IDAVFYSKNKYYYFFQG--SNQFEYDFLLQRITK 355 (365)
T ss_dssp HHHHSTTCCSS-----CSEEEEETTTEEEEEET--TEEEEEETTTTEEEE
T ss_pred hhhcCCCCCCc-----cceeeEecCCcEEEEeC--CEEEEEECCccEEec
Confidence 10000111100 0134445 889999954 789999998876544
No 281
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=83.86 E-value=36 Score=37.44 Aligned_cols=98 Identities=14% Similarity=-0.014 Sum_probs=57.2
Q ss_pred CeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEE-EEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 266 SSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGE-EYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 266 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~-~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
..++.++..++.-..+...+..+....... +|+.+++++. ...++ .||+.+..-..+. .......
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-------~~~l~~~~d~~~~~~~~l~--~~~~~~~---- 382 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-------EGDFLGIYDYRTGKAEKFE--ENLGNVF---- 382 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-------TEEEEEEEETTTCCEEECC--CCCCSEE----
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-------CCceEEEEECCCCCceEec--CCcccee----
Confidence 468888888877665543222111111223 6665555432 24678 8999888766654 1111111
Q ss_pred CCCCCcCCCCEEEEE-CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 345 EMPASAEAPPLVAVV-NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
.++.. +++.++++.....+++||+.+++-..+.
T Consensus 383 ----------~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~ 416 (1045)
T 1k32_A 383 ----------AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 416 (1045)
T ss_dssp ----------EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----------eeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence 22222 6676667777789999999998876664
No 282
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=83.79 E-value=18 Score=31.42 Aligned_cols=148 Identities=11% Similarity=0.061 Sum_probs=75.1
Q ss_pred EEEeCCEEEEEcCCCCCcCccceEEEEEcCCC--ce-eeC----CCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEE
Q 012701 197 SLAVGTELLVFGRELTAHHISHVIYRYSILTN--SW-SSG----MRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAE 269 (458)
Q Consensus 197 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W-~~~----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 269 (458)
++.+.+++|+|-|. .+|+++..+- -. ..+ +.+|. ....+....++++|++-| +..+
T Consensus 11 ~~~~~g~~~fFkg~--------~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg--------~~yw 73 (196)
T 3c7x_A 11 VAMLRGEMFVFKER--------WFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG--------DKHW 73 (196)
T ss_dssp EEEETTEEEEEETT--------EEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET--------TEEE
T ss_pred EEEcCCEEEEEECC--------EEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC--------CEEE
Confidence 45678999999664 4777754310 00 111 23343 111111124678999966 4578
Q ss_pred EEeCCCCcE---EEcCC----CCCCCcceeEEE-E--CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCC
Q 012701 270 MYNSETQTW---KVLPS----MKNPRKMCSGVF-M--DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGG 339 (458)
Q Consensus 270 ~yd~~t~~W---~~~~~----~p~~r~~~~~~~-~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~ 339 (458)
+|+..+... +.+.. +|.. ...+|+ . ++++|++-|. ..++||..+++-. +.-|..-..
T Consensus 74 ~~~~~~~~~gyPk~I~~~~~glP~~--~IDAA~~~~~~g~~yfFkG~---------~yw~yd~~~~~v~--~gyPk~i~~ 140 (196)
T 3c7x_A 74 VFDEASLEPGYPKHIKELGRGLPTD--KIDAALFWMPNGKTYFFRGN---------KYYRFNEELRAVD--SEYPKNIKV 140 (196)
T ss_dssp EEETTEECTTCSEEGGGTCBSCCSS--CCSEEEEETTTTEEEEEETT---------EEEEEETTTTEEC--TTCSEEGGG
T ss_pred EEeCCcccCCCCeEhhhcCCCCCCC--cccEEEEEccCCEEEEEECC---------EEEEEeCCccccc--CCCCccHHH
Confidence 887542110 11212 3322 233343 2 6899999663 4689998775321 111211110
Q ss_pred CCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCc
Q 012701 340 AARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~ 382 (458)
. +|..-. ..++... ++ ++|++-| +..++||..+++
T Consensus 141 ~-~gip~~-----idaAf~~~~~~~~YfFkg--~~y~r~d~~~~~ 177 (196)
T 3c7x_A 141 W-EGIPES-----PRGSFMGSDEVFTYFYKG--NKYWKFNNQKLK 177 (196)
T ss_dssp S-BTCCSS-----CSEEEECTTSSEEEEEET--TEEEEEETTTTE
T ss_pred C-CCcCCC-----cceeEEecCCCEEEEEEC--CEEEEEECCcce
Confidence 0 111100 0133333 44 8999944 789999987764
No 283
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=83.74 E-value=48 Score=35.06 Aligned_cols=244 Identities=18% Similarity=0.164 Sum_probs=121.0
Q ss_pred ceEEEEecCCCcEEeCCCCCCCccccccCceEEEeC----CEEEEEcCCCCC-cCc-cceEEEEEcCCCceeeCCC-CCC
Q 012701 166 LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG----TELLVFGRELTA-HHI-SHVIYRYSILTNSWSSGMR-MNA 238 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~----~~lyv~GG~~~~-~~~-~~~v~~yd~~t~~W~~~~~-~p~ 238 (458)
..++..+-...+|..+...+.........-..++++ +.||+..+.... ... ...+++=.=.-.+|+++.. .+.
T Consensus 45 ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~ 124 (737)
T 2cn3_A 45 GGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKM 124 (737)
T ss_dssp SCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCC
T ss_pred CcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCccc
Confidence 456777777789999876433211000112234443 578887543111 001 1234443333468987642 111
Q ss_pred -----CC-ceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCc--------------ceeEEE
Q 012701 239 -----PR-CLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRK--------------MCSGVF 295 (458)
Q Consensus 239 -----~r-~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--------------~~~~~~ 295 (458)
.+ ..+..++. .+.||+... .+ ..+++=.=.-.+|+.+..+|.... +...+.
T Consensus 125 ~~~~~g~~~~~~l~~~p~~~~~v~~g~~-~g-----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~ 198 (737)
T 2cn3_A 125 GGNMPGRSMGERLAIDPNDNRILYLGTR-CG-----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVV 198 (737)
T ss_dssp CTTSTTTTSCCCEEECSSCTTCEEEECS-TT-----CCEEEESSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEE
T ss_pred CCCcCcccccceEEECCCCCCEEEEeec-cC-----CcEEEeCCCCcceecccCCCCCcccccCcccccccCCCCEEEEE
Confidence 12 12344443 256666421 10 123322222357999876654210 112233
Q ss_pred EC----------CEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEE
Q 012701 296 MD----------GKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNEL 363 (458)
Q Consensus 296 ~~----------g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~l 363 (458)
++ +.||+.-... . ..+++=.-.-.+|+.+..+|.....+ ..++ ++.+
T Consensus 199 ~dp~~~~~~~~~~~v~~~~~~~--~----~~v~~S~DgG~tW~~~~~~p~~~~~~---------------~~~~~~~~~l 257 (737)
T 2cn3_A 199 FDKSSSTPGNPTKTIYVGVADK--N----ESIYRSTDGGVTWKAVPGQPKGLLPH---------------HGVLASNGML 257 (737)
T ss_dssp ECGGGSCTTSCCSCEEEEESCS--S----CCEEEESSTTSCCEECTTCCCSSEEE---------------EEEECTTSEE
T ss_pred cCCCCcccCCCCCEEEEEecCC--C----ccEEEEcCCCCceEECCCCCCcccce---------------EEEECCCCeE
Confidence 32 2677642111 0 11322222345799988666432212 2334 6789
Q ss_pred EEEEc---------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEe----CCEEEEEcCCCCCCCCeeeEEEee
Q 012701 364 YAADY---------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRAC----GDRLIVIGGPKASGEGFIELNSWV 430 (458)
Q Consensus 364 yv~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~----~~~lyv~GG~~~~~~~~~~~~~~~ 430 (458)
|+..+ ....+++++....+|+.+...|.... ...|+.+..++ .+.||+.+.... ..+..+|.
T Consensus 258 ~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~-~~~~~~~~i~v~p~~~~~ly~~~~~~~----~~~~~l~~ 332 (737)
T 2cn3_A 258 YITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSS-DNRFCFAGLAVDRQNPDIIMVTSMNAW----WPDEYIFR 332 (737)
T ss_dssp EEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTST-TCCSEEEEEEECTTCTTCEEEEEECCC----SSCCCEEE
T ss_pred EEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCc-ccccccccEEEcCCCCCEEEEEecccC----CCCccEEE
Confidence 98742 33579999999999999987665310 01133332222 257888764321 11234666
Q ss_pred cCCCCCCceEe
Q 012701 431 PSEGPPQWNLL 441 (458)
Q Consensus 431 ~~~~~~~W~~l 441 (458)
-.....+|+.+
T Consensus 333 S~DgG~tW~~~ 343 (737)
T 2cn3_A 333 STDGGATWKNI 343 (737)
T ss_dssp ESSTTSSCEES
T ss_pred eCCCCccccch
Confidence 66677799888
No 284
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=83.67 E-value=7.2 Score=40.95 Aligned_cols=146 Identities=5% Similarity=-0.034 Sum_probs=77.8
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCc---EEEcCCCCCCCcceeE
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQT---WKVLPSMKNPRKMCSG 293 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r~~~~~ 293 (458)
...+|++|..+..|+.+..-.... ...+..++.+|+....+. ....++.+|+.+.. |+.+-+..........
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPEDSSASLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence 457888887777787764322211 222224555666644321 23678999988765 8776432212222233
Q ss_pred EEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEE-EECC-EEEEEE-cC-
Q 012701 294 VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVA-VVNN-ELYAAD-YA- 369 (458)
Q Consensus 294 ~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~-~~~~-~lyv~g-g~- 369 (458)
...+++|++....+ ....++.+|+....-..+. ++...... .+. .-++ .|++.. ..
T Consensus 326 ~~~~~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~-~~~~~~v~--------------~~~~s~d~~~l~~~~ss~~ 385 (695)
T 2bkl_A 326 SIVGGHLSLEYLKD-----ATSEVRVATLKGKPVRTVQ-LPGVGAAS--------------NLMGLEDLDDAYYVFTSFT 385 (695)
T ss_dssp EEETTEEEEEEEET-----TEEEEEEEETTCCEEEECC-CSSSSEEC--------------CCBSCTTCSEEEEEEEETT
T ss_pred EEECCEEEEEEEEC-----CEEEEEEEeCCCCeeEEec-CCCCeEEE--------------EeecCCCCCEEEEEEcCCC
Confidence 44588888876544 2356888887655444443 22111000 000 0133 444332 11
Q ss_pred -CCeEEEEeCCCCceEEec
Q 012701 370 -DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 370 -~~~v~~yd~~~~~W~~v~ 387 (458)
...++.||..+++.+.+.
T Consensus 386 ~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 386 TPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp EEEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEECCCCcEEEEe
Confidence 157999999888876664
No 285
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=82.78 E-value=13 Score=33.25 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=16.8
Q ss_pred CCEEEEEEcCCCeEEEEeCCCC
Q 012701 360 NNELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~ 381 (458)
++++|++-| +..|+||..++
T Consensus 183 ~g~~YfFkg--~~Ywr~d~~~~ 202 (227)
T 3lp9_A 183 TNEVYFFKD--DHYARVKVTPX 202 (227)
T ss_dssp TTEEEEEET--TEEEEEECCSS
T ss_pred CceEEEEEC--CEEEEEECCcc
Confidence 589999954 78999998876
No 286
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=82.63 E-value=32 Score=32.30 Aligned_cols=28 Identities=7% Similarity=0.072 Sum_probs=17.6
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEEec
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~v~ 387 (458)
++.||+.+...+.|.+|+.+.+.=+.++
T Consensus 321 g~~l~v~~~~~~~v~v~~~~~~~l~~~~ 348 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWKDEFLHRVA 348 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEETTEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEEEchhhCceee
Confidence 4466666555678888887766433333
No 287
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=82.55 E-value=20 Score=37.88 Aligned_cols=147 Identities=7% Similarity=-0.011 Sum_probs=82.1
Q ss_pred cceEEEEEcCCC--c-eeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC--CcEEEcCCCCCCCcce
Q 012701 217 SHVIYRYSILTN--S-WSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET--QTWKVLPSMKNPRKMC 291 (458)
Q Consensus 217 ~~~v~~yd~~t~--~-W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r~~~ 291 (458)
.+.++++|..+. . |+.+..-....... ....++.||+....+. ....++.+|..+ ..|+.+-+-... ...
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~ 367 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPESKD-NLE 367 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCCSS-EEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCCCC-eEE
Confidence 468999999887 6 87775433222222 2345778887754332 236789999988 578876432211 112
Q ss_pred eEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEE-ECC-EEEEEE-c
Q 012701 292 SGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAV-VNN-ELYAAD-Y 368 (458)
Q Consensus 292 ~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~-~~~-~lyv~g-g 368 (458)
.....+++|++....+ ....++.+|+....-..+. +|...... .+.. -++ .|++.. .
T Consensus 368 ~~~~~~~~lv~~~~~d-----g~~~l~~~~~~g~~~~~l~-~~~~~~v~--------------~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 368 SVGIAGNRLFASYIHD-----AKSQVLAFDLDGKPAGAVS-LPGIGSAS--------------GLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp EEEEEBTEEEEEEEET-----TEEEEEEEETTSCEEEECB-CSSSCEEE--------------EEECCBTCSCEEEEEEE
T ss_pred EEEEECCEEEEEEEEC-----CEEEEEEEeCCCCceeecc-CCCCeEEE--------------EeecCCCCCEEEEEEcC
Confidence 2334588888776544 2356888887655444443 22111100 1111 133 344332 2
Q ss_pred C--CCeEEEEeCCCCceEEecc
Q 012701 369 A--DMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 369 ~--~~~v~~yd~~~~~W~~v~~ 388 (458)
. ...++.||..+++.+.+..
T Consensus 428 ~~~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 428 FTQPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp TTEEEEEEEEETTTTEEEECSC
T ss_pred CCCCCEEEEEECCCCcEEEEec
Confidence 2 2689999999888766643
No 288
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=81.68 E-value=12 Score=33.43 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEE----ec-cCCCccC-C-CCcccEEEEE-eCCEEEEEcCC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFT----IG-RLPERAN-S-MNGWGLAFRA-CGDRLIVIGGP 416 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~----v~-~lp~~~~-~-~~~~~~a~~~-~~~~lyv~GG~ 416 (458)
++++|++-| +..|+||..+++-.. |. .+|.-.. . ....-.|+.- .++++|+|-|.
T Consensus 127 ~gk~yfFkG--~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~ 189 (225)
T 3oyo_A 127 GKEVYLFKG--NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ 189 (225)
T ss_dssp TTEEEEEET--TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT
T ss_pred CCcEEEEeC--CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC
Confidence 689999955 789999987765443 11 1221100 0 0001133332 47899999884
No 289
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=80.94 E-value=38 Score=35.37 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=79.9
Q ss_pred cceEEEEecCC------C--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCC---ceeeC
Q 012701 165 LLEWEAFDPIR------R--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTN---SWSSG 233 (458)
Q Consensus 165 ~~~~~~yDp~~------~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~---~W~~~ 233 (458)
...++.+|..+ . .+..+..-.... ......-|+.||+.+... .....++++|+.+. .|+.+
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~s~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l 329 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGE-----YDYVTNEGTVFTFKTNRH---SPNYRLINIDFTDPEESKWKVL 329 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-----EEEEEEETTEEEEEECTT---CTTCEEEEEETTSCCGGGCEEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcE-----EEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCCcccceec
Confidence 35778888765 3 466554322111 111223467888886432 12457999999876 48776
Q ss_pred CCCCCCCceeeEEEe-CCEEEEEeccCCCCCccCeEEEEeCCCCc-EEEcCCCCCCCcceeEEEE--CC-EEEEEccccC
Q 012701 234 MRMNAPRCLFGSASL-GEIAILAGGSDLEGNILSSAEMYNSETQT-WKVLPSMKNPRKMCSGVFM--DG-KFYVIGGIGG 308 (458)
Q Consensus 234 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~--~g-~lyv~GG~~~ 308 (458)
.+-.........+.. ++.+++....++ ...++++|+.+++ .+.+. .+ ......+.. ++ .|++....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~-~~--~~~v~~~~~s~d~~~l~~~~ss-- 400 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFP-LE--VGSVVGYSGQKKDTEIFYQFTS-- 400 (710)
T ss_dssp ECCCSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEEC-CC--SSEEEEEECCTTCSEEEEEEEC--
T ss_pred cCCCCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecC-CC--CceEEEEecCCCCCEEEEEEeC--
Confidence 432221122233444 678877766543 3568999986665 44443 22 111122222 34 45444221
Q ss_pred CCCcccceEEEEECCCCc--eEEcC
Q 012701 309 SDSKVLTCGEEYDLETET--WTEIP 331 (458)
Q Consensus 309 ~~~~~~~~v~~yd~~~~~--W~~i~ 331 (458)
...-..++.||+.+++ .+.+.
T Consensus 401 --~~~P~~i~~~d~~tg~~~~~~l~ 423 (710)
T 2xdw_A 401 --FLSPGIIYHCDLTKEELEPRVFR 423 (710)
T ss_dssp --SSCCCEEEEEETTSSSCCCEEEE
T ss_pred --CCCCCEEEEEECCCCccceEEee
Confidence 1234578999998877 66554
No 290
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=80.68 E-value=46 Score=32.73 Aligned_cols=75 Identities=12% Similarity=0.020 Sum_probs=43.9
Q ss_pred CCEEEEEEc---------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCC-EEEEEcCCCCCCCCeeeEEEe
Q 012701 360 NNELYAADY---------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGD-RLIVIGGPKASGEGFIELNSW 429 (458)
Q Consensus 360 ~~~lyv~gg---------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~-~lyv~GG~~~~~~~~~~~~~~ 429 (458)
++++|+... ..+.|.++|..+++ .+..++.+... +++++..-+. .+|+..... ..+.++
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--vv~~I~vg~~P---~gia~spDg~~~lyv~n~~s------~~VsVI 398 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--RINKIELGHEI---DSINVSQDAEPLLYALSAGT------QTLHIY 398 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--EEEEEEEEEEE---CEEEECCSSSCEEEEEETTT------TEEEEE
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCe--EEEEEECCCCc---CeEEEccCCCEEEEEEcCCC------CeEEEE
Confidence 478999842 13579999987654 44444433321 4555544455 677776422 246666
Q ss_pred ecCCCCCCceEeecc-CCCce
Q 012701 430 VPSEGPPQWNLLARK-QSANF 449 (458)
Q Consensus 430 ~~~~~~~~W~~l~~~-p~~~~ 449 (458)
+. .+|+.+..+ +.+..
T Consensus 399 D~----~t~kvv~tI~~vG~~ 415 (426)
T 3c75_H 399 DA----ATGEELRSVDQLGRG 415 (426)
T ss_dssp ET----TTCCEEEEECCCSSS
T ss_pred EC----CCCCEEEEecCCCCC
Confidence 65 567777764 44443
No 291
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=80.30 E-value=37 Score=31.45 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=17.4
Q ss_pred CCEEEEEEcCCCeEEEEeCCC
Q 012701 360 NNELYAADYADMEVRKYDKER 380 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~ 380 (458)
++++++.|+.++.|.+||..+
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSC
T ss_pred CCCEEEEEcCCCeEEEEECCC
Confidence 677888888889999999843
No 292
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=79.88 E-value=41 Score=31.75 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCEEEEEccccCC---CCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-C-CEEEEEEcCCC
Q 012701 297 DGKFYVIGGIGGS---DSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-N-NELYAADYADM 371 (458)
Q Consensus 297 ~g~lyv~GG~~~~---~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~gg~~~ 371 (458)
++++|+....++. .....+.+.+||+++.+ .+..++... .. .++.. + ..||+.+. +
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~--------------~ia~spdg~~l~v~n~--~ 325 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-AL--------------SMTIDQQRNLMLTLDG--G 325 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CC--------------EEEEETTTTEEEEECS--S
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-ee--------------EEEECCCCCEEEEeCC--C
Confidence 4789987542211 11124579999998875 333333322 22 45554 3 46776654 8
Q ss_pred eEEEEeCCCCceEEeccC
Q 012701 372 EVRKYDKERRLWFTIGRL 389 (458)
Q Consensus 372 ~v~~yd~~~~~W~~v~~l 389 (458)
.|.+||..+..-+.+..+
T Consensus 326 ~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CEEEEECSSSSCEEEEEE
T ss_pred eEEEEECCCCcceeeEEe
Confidence 999999887633555553
No 293
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=79.53 E-value=44 Score=31.90 Aligned_cols=99 Identities=5% Similarity=-0.043 Sum_probs=50.3
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEE-eCCEEEEEcCCCC---CcCccceEEEEEcCCCceeeCCCCC-----
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLA-VGTELLVFGRELT---AHHISHVIYRYSILTNSWSSGMRMN----- 237 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~-~~~~lyv~GG~~~---~~~~~~~v~~yd~~t~~W~~~~~~p----- 237 (458)
.+..||+.+.+-. ..++.... .+-.+. -+..||+..-... .....+.+.+||+.|.+-...-+++
T Consensus 48 ~v~v~D~~t~~~~--~~i~~g~~----p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~ 121 (373)
T 2mad_H 48 QQWVLDAGSGSIL--GHVNGGFL----PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 121 (373)
T ss_pred EEEEEECCCCeEE--EEecCCCC----CCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcccc
Confidence 5688999877643 22332211 111122 2567888752110 1113567899999876432211111
Q ss_pred ----CCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcE
Q 012701 238 ----APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTW 278 (458)
Q Consensus 238 ----~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 278 (458)
.|+ .....-.+..||+..-. ..+.+.++| .+++-
T Consensus 122 ~~g~~p~-~~~~spDG~~l~v~n~~-----~~~~v~viD-~t~~~ 159 (373)
T 2mad_H 122 DVGPYSW-MNANTPNNADLLFFQFA-----AGPAVGLVV-QGGSS 159 (373)
T ss_pred ccCCCcc-ceEECCCCCEEEEEecC-----CCCeEEEEE-CCCCE
Confidence 122 12222235678887321 136799999 88754
No 294
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=78.03 E-value=52 Score=31.86 Aligned_cols=60 Identities=15% Similarity=0.094 Sum_probs=31.6
Q ss_pred ceEEEEecCCCcEEeCCCCCC-Ccccc--ccCceEEE-eCCEEEEEcCCCCCcCccceEEEEEcCCCce
Q 012701 166 LEWEAFDPIRRRWMHLPRMTS-NECFM--CSDKESLA-VGTELLVFGRELTAHHISHVIYRYSILTNSW 230 (458)
Q Consensus 166 ~~~~~yDp~~~~W~~l~~~p~-~~~~~--~~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W 230 (458)
+.+..+|+.+.+-..--+++. .+... ......+. -|..+||.... ..+.|.+.|..|++=
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-----~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-----PAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-----SSCEEEEEETTTTEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-----CCCeEEEEECCCCcE
Confidence 458899999886533211221 11000 00011122 25678887421 346799999998764
No 295
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=76.82 E-value=49 Score=30.92 Aligned_cols=64 Identities=9% Similarity=0.137 Sum_probs=36.4
Q ss_pred CCEEEEEEcCCCe-EEEEeCCCCceEEeccCCCccCCCCcccEEEE-EeCCEEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 360 NNELYAADYADME-VRKYDKERRLWFTIGRLPERANSMNGWGLAFR-ACGDRLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 360 ~~~lyv~gg~~~~-v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++.+++.|+.++. |.+||..+.+- +..+..... .+.-.++. ..++++++.|+.+ ..+.+|+...
T Consensus 206 ~g~~l~s~s~d~~~v~iwd~~~~~~--~~~~~~g~h--~~~v~~~~~s~~~~~l~s~s~d------~~v~iw~~~~ 271 (355)
T 3vu4_A 206 KSDMVATCSQDGTIIRVFKTEDGVL--VREFRRGLD--RADVVDMKWSTDGSKLAVVSDK------WTLHVFEIFN 271 (355)
T ss_dssp TSSEEEEEETTCSEEEEEETTTCCE--EEEEECTTC--CSCEEEEEECTTSCEEEEEETT------CEEEEEESSC
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcE--EEEEEcCCC--CCcEEEEEECCCCCEEEEEECC------CEEEEEEccC
Confidence 6778888888887 99999987643 222221100 00012222 2356777777643 2577787754
No 296
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=76.70 E-value=40 Score=29.83 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=52.4
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCC---------CceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEE
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILT---------NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEM 270 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t---------~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 270 (458)
.++++|+|-|. .+|+++... ..|.. +|.. . -++...++++|++-| +..++
T Consensus 27 ~~g~~yfFkg~--------~~Wr~~~~~~~~~p~~Is~~wpg---LP~~-I-DAA~~~~~~~yfFkG--------~~yw~ 85 (219)
T 1hxn_A 27 NHGATYVFSGS--------HYWRLDTNRDGWHSWPIAHQWPQ---GPST-V-DAAFSWEDKLYLIQD--------TKVYV 85 (219)
T ss_dssp TTSCEEEEETT--------EEEESSSSSCTTCCEEGGGTCTT---SCSS-C-SEEEEETTEEEEEET--------TEEEE
T ss_pred CCCcEEEEeCC--------EEEEEcCCCCCCCceEhhhhccC---CCCC-c-cEEEEECCcEEEecC--------CEEEE
Confidence 57899999654 356655432 22332 3321 1 233335899999966 56888
Q ss_pred EeCCCCcEEEcC----------CCCCC--CcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCC
Q 012701 271 YNSETQTWKVLP----------SMKNP--RKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLET 324 (458)
Q Consensus 271 yd~~t~~W~~~~----------~~p~~--r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~ 324 (458)
|+..++. +..+ .+|.. ...--+|+. ++++|++-|. ..++||..+
T Consensus 86 ~~~~~~~-~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~ 144 (219)
T 1hxn_A 86 FLTKGGY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR---------RLWWLDLKS 144 (219)
T ss_dssp EECSSSC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT---------EEEEEEGGG
T ss_pred EeCCCCc-eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC---------EEEEEeCCC
Confidence 8865421 1111 12322 122334432 6899999663 368898754
No 297
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=75.90 E-value=52 Score=34.02 Aligned_cols=62 Identities=15% Similarity=-0.068 Sum_probs=34.1
Q ss_pred CeEEEEeCCCCc-EEEcCCCCCC---CcceeEE--EECCEEEEEccccCCCCcccceEEEEECCCCceEEc
Q 012701 266 SSAEMYNSETQT-WKVLPSMKNP---RKMCSGV--FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI 330 (458)
Q Consensus 266 ~~v~~yd~~t~~-W~~~~~~p~~---r~~~~~~--~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i 330 (458)
..+.++|..+++ ...+...... ......+ .-||+++++....+ .....++.+|+.+.+...+
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---QNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---SCEEEEEEEETTTCCEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---CCeEEEEEEeCCCCcceEE
Confidence 378899998876 3444321111 1111112 23788665543321 2335688999998876554
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=75.87 E-value=52 Score=33.04 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=44.5
Q ss_pred CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC-------CCCCCCCC-CCCCCCcCCCCEEEEEC--CEEEEE
Q 012701 297 DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP-------ARGGAARG-TEMPASAEAPPLVAVVN--NELYAA 366 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~-------~r~~~~~~-~~~~~~~~~~~~~~~~~--~~lyv~ 366 (458)
++.|||.-.. ...|.+|++ +..-+.+.-... ...+...| ....+....|..+++-. +.|||.
T Consensus 390 ~g~lyVaD~~-------N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVa 461 (496)
T 3kya_A 390 EYDFYFVDRL-------NFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH 461 (496)
T ss_dssp CEEEEEEEGG-------GTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEE
T ss_pred CCeEEEEECC-------CCEEEEEeC-CCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEE
Confidence 4689987332 357888985 445554432110 00121112 12222333444667663 899999
Q ss_pred EcCCCeEEEEeCCCC
Q 012701 367 DYADMEVRKYDKERR 381 (458)
Q Consensus 367 gg~~~~v~~yd~~~~ 381 (458)
...+..|.+++++.+
T Consensus 462 D~~N~rIrki~~~~~ 476 (496)
T 3kya_A 462 DQVGHTIRTISMEQE 476 (496)
T ss_dssp ETTTTEEEEEEECCC
T ss_pred eCCCCEEEEEECCCC
Confidence 988899999998654
No 299
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=75.54 E-value=87 Score=33.19 Aligned_cols=263 Identities=15% Similarity=0.146 Sum_probs=121.3
Q ss_pred EEEEEeccceEEEEecCCCcEEeCCC-C-----CCCccccccCceEEEe----CCEEEEEcCCCCCcCccceEEEEEcCC
Q 012701 158 WVYFSCHLLEWEAFDPIRRRWMHLPR-M-----TSNECFMCSDKESLAV----GTELLVFGRELTAHHISHVIYRYSILT 227 (458)
Q Consensus 158 ~l~~~~~~~~~~~yDp~~~~W~~l~~-~-----p~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t 227 (458)
.+|+.....-++.-+-.-.+|..+.. + +....... ....+++ .+.||+..|..........|++=+=.-
T Consensus 35 ~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG 113 (763)
T 3a0f_A 35 LIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLL-GTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRG 113 (763)
T ss_dssp CEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCC-SEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTT
T ss_pred EEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccc-ceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCC
Confidence 34444333445555556679998875 3 21100011 1122333 357888654311111123344322234
Q ss_pred CceeeCCC-CC-----CCCce-eeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCC---cceeEE
Q 012701 228 NSWSSGMR-MN-----APRCL-FGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPR---KMCSGV 294 (458)
Q Consensus 228 ~~W~~~~~-~p-----~~r~~-~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~ 294 (458)
.+|+++.. .+ ..|.. ...++. .+.+|+.+. ...+++=+=.-.+|+.+..++... .....+
T Consensus 114 ~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~-------~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i 186 (763)
T 3a0f_A 114 KTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR-------TQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISV 186 (763)
T ss_dssp SSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS-------SSCEEEESSTTSSCEECTTSCCCSCTTTCEEEE
T ss_pred CCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC-------CCcEEEECCCCcCccccccCcccCCCccceEEE
Confidence 68988752 11 11221 234443 357777531 122332222235899988766432 222233
Q ss_pred EE----CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCC-----CCCCCCCCcCCCCEEEEE--CCEE
Q 012701 295 FM----DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAA-----RGTEMPASAEAPPLVAVV--NNEL 363 (458)
Q Consensus 295 ~~----~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~-----~~~~~~~~~~~~~~~~~~--~~~l 363 (458)
.+ .+.||+.....+ .+++=+-.-.+|+.+...|.....++ ++.......+..+...++ ++.|
T Consensus 187 ~~~p~~~~~~~~~~~~~g-------~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l 259 (763)
T 3a0f_A 187 IFDPKNVGTAYVASHAVG-------GLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRL 259 (763)
T ss_dssp EECSSSTTCEEEEESSTT-------CEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCE
T ss_pred EECCCCCCEEEEEEeCCC-------eEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcE
Confidence 33 246777643210 23332333457999875542110000 000000000000112222 6788
Q ss_pred EEEE--------cCCCeEEEEeCCCCceEEeccCCCccCC-----------CCcccEEEEEe-CCEEEEEcCCCCCCCCe
Q 012701 364 YAAD--------YADMEVRKYDKERRLWFTIGRLPERANS-----------MNGWGLAFRAC-GDRLIVIGGPKASGEGF 423 (458)
Q Consensus 364 yv~g--------g~~~~v~~yd~~~~~W~~v~~lp~~~~~-----------~~~~~~a~~~~-~~~lyv~GG~~~~~~~~ 423 (458)
|+.. +....+++.+-...+|+.+..+|..... ..++ .++++. .+.||+.+....
T Consensus 260 ~~~~~~~~~~~~~~~g~v~rS~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~gg~-~~i~v~~~~~v~~~~~~~~----- 333 (763)
T 3a0f_A 260 YITYSDAPGPWGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGW-NGISVGNGDTVVVSTLDAN----- 333 (763)
T ss_dssp EEEEESSCSSSCCCCEEEEEEETTTTEEEECCTTSSSSCEESCCCCCTTSCCCEE-EEEEECSTBCEEEEEESCT-----
T ss_pred EEEeccCCCCCCCcceeEEEEeCCCCceEECCCCCCCCccccccccccccccCCc-eeEEEcCCCeEEEEecCCC-----
Confidence 9884 3346899999999999999765532100 0011 123332 356777764211
Q ss_pred eeEEEeecCCCCCCceEe
Q 012701 424 IELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 424 ~~~~~~~~~~~~~~W~~l 441 (458)
.+..+|.-.....+|+.+
T Consensus 334 ~~~~l~~S~DgG~tW~~~ 351 (763)
T 3a0f_A 334 GEDSVYLSRDAGNSWKDL 351 (763)
T ss_dssp TSCCEEEESBTTSSEEEH
T ss_pred CCCCEEEECCCCCCcccC
Confidence 123455555566789887
No 300
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=75.35 E-value=90 Score=33.25 Aligned_cols=258 Identities=14% Similarity=0.135 Sum_probs=117.9
Q ss_pred eEEEEecCCCcEEeCCCCCCCccccccCceEEEeC----CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCC-CC----
Q 012701 167 EWEAFDPIRRRWMHLPRMTSNECFMCSDKESLAVG----TELLVFGRELTAHHISHVIYRYSILTNSWSSGMR-MN---- 237 (458)
Q Consensus 167 ~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~~~~----~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p---- 237 (458)
-++.-+-.-.+|..+...+.+.......-..++++ +.||+..|..... ....|++=+=.-.+|+++.. ++
T Consensus 38 gv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~-~~~~v~~S~DgG~TW~~~~~~~~~~~~ 116 (789)
T 1sqj_A 38 GAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD-EWAAFYVSEDRGQSFTIYESPFPMGAN 116 (789)
T ss_dssp CEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS-SCCEEEEESSTTSEEEEEECSSCCCTT
T ss_pred CEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCC-cccEEEEECCCCCcceeccCCcccCcc
Confidence 45555556678998765332110000111223332 4688876542100 01344443333468988742 11
Q ss_pred -CCC-ceeeEEEe---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCC---CCcceeEEEE----CCEEEEEcc
Q 012701 238 -APR-CLFGSASL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKN---PRKMCSGVFM----DGKFYVIGG 305 (458)
Q Consensus 238 -~~r-~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~---~r~~~~~~~~----~g~lyv~GG 305 (458)
..| .....++. .+.+|+. ... ..+++=+=.-.+|+.+..+|. .-.....+.+ .+.||+...
T Consensus 117 ~~~~~~~~~iav~p~~~~~v~~g-~~~------~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~ 189 (789)
T 1sqj_A 117 DMGRNNGERLAVNPFNSNEVWMG-TRT------EGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASAT 189 (789)
T ss_dssp STTTTSCCCEEEETTEEEEEEEE-CSS------SCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEES
T ss_pred CCCccceeEEEEcCCCCCEEEEE-ecc------CCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEc
Confidence 112 12334443 3456663 311 223332223357999876542 1122223333 246777543
Q ss_pred ccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCC--CCcCCC-CEEEEE--CCEEEEEE--------cCCCe
Q 012701 306 IGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMP--ASAEAP-PLVAVV--NNELYAAD--------YADME 372 (458)
Q Consensus 306 ~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~--~~~~~~-~~~~~~--~~~lyv~g--------g~~~~ 372 (458)
.. ..+++=.-.-.+|+.+..+|...... ....++ ...... ..+++. .+.||+.. +....
T Consensus 190 ~~-------~~v~~S~DgG~TW~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~ 261 (789)
T 1sqj_A 190 AP-------QGMYVTHDGGVSWEPVAGQPSSWLNR-TTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGE 261 (789)
T ss_dssp ST-------TCEEEESSTTSSCEECTTCCCSCCHH-HHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCC
T ss_pred CC-------CeEEEEcCCCcCcccCCCCcCccccc-cccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCce
Confidence 11 12222222345799987544322000 000000 000000 122222 78999983 35578
Q ss_pred EEEEeCCCCceEEeccCCCccCC----CCcc---c-EEEEEe---CCEEEEEcCCCCCCCCeeeEEEeecCCCCCCceEe
Q 012701 373 VRKYDKERRLWFTIGRLPERANS----MNGW---G-LAFRAC---GDRLIVIGGPKASGEGFIELNSWVPSEGPPQWNLL 441 (458)
Q Consensus 373 v~~yd~~~~~W~~v~~lp~~~~~----~~~~---~-~a~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W~~l 441 (458)
|++.+-...+|+.+...|..... ...+ + .++++. .+.||+.+...... .....+|.-.....+|+.+
T Consensus 262 l~~S~DgG~tW~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~--~~~~~l~~S~DgG~tW~~~ 339 (789)
T 1sqj_A 262 VWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPG--PALDSIYLSTDAGATWKDV 339 (789)
T ss_dssp EEEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSC--SSCCCEEEESSTTSSEEEH
T ss_pred EEEEeCCCCceEECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCC--cccccEEEecCCCCCceeC
Confidence 99999999999999765431100 0012 2 233332 35678776432110 0013466666667799988
Q ss_pred e
Q 012701 442 A 442 (458)
Q Consensus 442 ~ 442 (458)
.
T Consensus 340 ~ 340 (789)
T 1sqj_A 340 T 340 (789)
T ss_dssp H
T ss_pred c
Confidence 6
No 301
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=75.16 E-value=22 Score=34.09 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
++..++.|+.++.|.+||..+++-..+
T Consensus 353 ~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 353 SDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp TSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred CCCEEEEeccCCEEEEEEcCCCcceee
Confidence 566668888889999999998876554
No 302
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=73.67 E-value=95 Score=32.72 Aligned_cols=248 Identities=10% Similarity=0.045 Sum_probs=117.3
Q ss_pred CCcEEeCCCCCCC-ccccccCceEEEe---CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCC----ceeeEE
Q 012701 175 RRRWMHLPRMTSN-ECFMCSDKESLAV---GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPR----CLFGSA 246 (458)
Q Consensus 175 ~~~W~~l~~~p~~-~~~~~~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~ 246 (458)
..+|..+.+-... +. ..+++. .+.||+.. ....+|+.+-...+|+.+.+.+... .....+
T Consensus 10 ~~~w~~~~~~~~~g~i-----~~i~~~p~~~~~~~~~~-------~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i 77 (737)
T 2cn3_A 10 PYKWDNVVIGGGGGFM-----PGIVFNETEKDLIYARA-------AIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESI 77 (737)
T ss_dssp CEEEEEECCCSBCSCC-----CEEEECSSSTTCEEEEC-------SSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEE
T ss_pred CCeeEEcccCCCccee-----eEEEECCCCCCEEEEEe-------cCCcEEEeCCCCCCEEECcCccCcccccCCCcceE
Confidence 3578887654322 21 122221 25677743 1235899988889999986643211 122233
Q ss_pred Ee----CCEEEEEeccCCCCCccCeEEEEeCC--CCcEEEcCC-CCC-----CC-cceeEEEE---CCEEEEEccccCCC
Q 012701 247 SL----GEIAILAGGSDLEGNILSSAEMYNSE--TQTWKVLPS-MKN-----PR-KMCSGVFM---DGKFYVIGGIGGSD 310 (458)
Q Consensus 247 ~~----~~~lyv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~-~p~-----~r-~~~~~~~~---~g~lyv~GG~~~~~ 310 (458)
.+ .+.||+..|............+|-.. -.+|+.+.. .+. .+ ..+..++. .+.||+.....
T Consensus 78 ~~dp~~~~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g--- 154 (737)
T 2cn3_A 78 ATDPVDPNRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCG--- 154 (737)
T ss_dssp EECSSSTTCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTT---
T ss_pred EeCCCCCCEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccC---
Confidence 33 35888886531110001122334333 357988652 110 12 22344442 25677643110
Q ss_pred CcccceEEEEECCCCceEEcCCCCCCCCCC-CCCCCCCCCcCCCCEEEEEC----------CEEEEEEcCC-CeEEEEeC
Q 012701 311 SKVLTCGEEYDLETETWTEIPNMSPARGGA-ARGTEMPASAEAPPLVAVVN----------NELYAADYAD-MEVRKYDK 378 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~-~~~~~~~~~~~~~~~~~~~~----------~~lyv~gg~~-~~v~~yd~ 378 (458)
..+++=+-.-.+|+.+..+|...... .+... ............++ +.||+.-... ..|++=.-
T Consensus 155 ----~gl~~S~DgG~tW~~~~~~~~~~~~~~~p~~~-~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~D 229 (737)
T 2cn3_A 155 ----NGLWRSTDYGVTWSKVESFPNPGTYIYDPNFD-YTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTD 229 (737)
T ss_dssp ----CCEEEESSTTSSCEECTTCCCCCCCBSCTTST-TTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESS
T ss_pred ----CcEEEeCCCCcceecccCCCCCcccccCcccc-cccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcC
Confidence 12333233346899988665421100 00000 00000011223332 2677753222 24555444
Q ss_pred CCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCC-CCCCeeeEEEeecCCCCCCceEeeccCC
Q 012701 379 ERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKA-SGEGFIELNSWVPSEGPPQWNLLARKQS 446 (458)
Q Consensus 379 ~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~-~~~~~~~~~~~~~~~~~~~W~~l~~~p~ 446 (458)
...+|+.+..+|.... .+..+...++.||+..+... .......-.+|..+....+|+.+...|.
T Consensus 230 gG~tW~~~~~~p~~~~----~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~ 294 (737)
T 2cn3_A 230 GGVTWKAVPGQPKGLL----PHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPY 294 (737)
T ss_dssp TTSCCEECTTCCCSSE----EEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCT
T ss_pred CCCceEECCCCCCccc----ceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCC
Confidence 5678999987765321 11222222778888653211 1011123456777777889999987664
No 303
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=72.80 E-value=57 Score=29.85 Aligned_cols=142 Identities=13% Similarity=-0.022 Sum_probs=73.2
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCC-EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGE-IAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGV 294 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~ 294 (458)
....++++|..++.-+.+ .........-++ .|+......+. ....++++|..+++...+...+. ....+
T Consensus 41 ~~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~--~~~~l~~~~~~~g~~~~l~~~~~---~~~~~ 110 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEK--KVSEIWVADLETLSSKKILEAKN---IRSLE 110 (347)
T ss_dssp EEEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTT--TEEEEEEEETTTTEEEEEEEESE---EEEEE
T ss_pred ccceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCC--CcceEEEEECCCCceEEEEcCCC---cccee
Confidence 356789999988876655 111111111134 45444322211 13568999999887766644332 22222
Q ss_pred EE-CCEEEEEccccCCC--------------------CcccceEEEEECCCCce-EEcCCCCCCCCCCCCCCCCCCCcCC
Q 012701 295 FM-DGKFYVIGGIGGSD--------------------SKVLTCGEEYDLETETW-TEIPNMSPARGGAARGTEMPASAEA 352 (458)
Q Consensus 295 ~~-~g~lyv~GG~~~~~--------------------~~~~~~v~~yd~~~~~W-~~i~~~p~~r~~~~~~~~~~~~~~~ 352 (458)
.. +|+.+++....... ......++.+|+.+++. ..+.. + ...
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~------------ 174 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFS------------ 174 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTC------------
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---Ccc------------
Confidence 22 56544443321000 01135689999998877 55544 2 222
Q ss_pred CCEEEEECCEEEEEEcC---------CCeEEEEeCCCCceEEec
Q 012701 353 PPLVAVVNNELYAADYA---------DMEVRKYDKERRLWFTIG 387 (458)
Q Consensus 353 ~~~~~~~~~~lyv~gg~---------~~~v~~yd~~~~~W~~v~ 387 (458)
.++...+.|++.+.. ...++.+| +++++.+.
T Consensus 175 --~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~ 214 (347)
T 2gop_A 175 --SGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMF 214 (347)
T ss_dssp --EEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEE
T ss_pred --cccCCCCeEEEEEecccccccccccccEEEeC--CCceEEec
Confidence 344444435544422 33688888 77777664
No 304
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=72.28 E-value=82 Score=33.25 Aligned_cols=99 Identities=8% Similarity=-0.099 Sum_probs=54.7
Q ss_pred ccceEEEEEcCCC--ce--eeCCCCCCCCceeeEE-EeCCEEEEEeccCCCCCccCeEEEEeCCC-CcEEE-cCCCCCCC
Q 012701 216 ISHVIYRYSILTN--SW--SSGMRMNAPRCLFGSA-SLGEIAILAGGSDLEGNILSSAEMYNSET-QTWKV-LPSMKNPR 288 (458)
Q Consensus 216 ~~~~v~~yd~~t~--~W--~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~-~~~~p~~r 288 (458)
....++++|..+. .+ +.+.+-... ..+... ..++.||+..-.++. ....++.+|..+ ..|+. +-+.....
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~~a--~~~~L~~~d~~~~~~~~~~li~~~~~~ 369 (751)
T 2xe4_A 293 ETAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEGGA--VNHKLLIAPRGQPSDWSHVLVDHSEDV 369 (751)
T ss_dssp SCEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTTTC--TTCEEEEEETTSTTCCCCEEECCCSSE
T ss_pred CCceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCCCC--CCcEEEEEcCCCcccceeeEECCCCCc
Confidence 3567999999875 46 555332111 112222 337888888654411 235788999886 67875 32211111
Q ss_pred cceeEEEECCEEEEEccccCCCCcccceEEEEEC
Q 012701 289 KMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDL 322 (458)
Q Consensus 289 ~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~ 322 (458)
........++.|++....+ ....++++|+
T Consensus 370 ~l~~~~~~~~~lv~~~~~~-----g~~~l~~~dl 398 (751)
T 2xe4_A 370 FMESIAVRSNYLVVAGRRA-----GLTRIWTMMA 398 (751)
T ss_dssp EEEEEEECSSEEEEEEEET-----TEEEEEEEEC
T ss_pred EEEEEEEECCEEEEEEEeC-----CEEEEEEEec
Confidence 1122334467777765443 2456888996
No 305
>1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1
Probab=71.72 E-value=53 Score=28.99 Aligned_cols=140 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred eCCEEEEEeccCCCCCccCeEEEEeCCCCcE--EEc----CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEE
Q 012701 248 LGEIAILAGGSDLEGNILSSAEMYNSETQTW--KVL----PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYD 321 (458)
Q Consensus 248 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~----~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd 321 (458)
.++++|++=| ...++++.....+ ..+ +.+|. .--++...++++|++-|. .+++|+
T Consensus 27 ~~g~~yfFkg--------~~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG~---------~yw~~~ 87 (219)
T 1hxn_A 27 NHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT---------KVYVFL 87 (219)
T ss_dssp TTSCEEEEET--------TEEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT---------EEEEEE
T ss_pred CCCcEEEEeC--------CEEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecCC---------EEEEEe
Confidence 4788999966 3345555432211 111 12332 222344459999999653 478888
Q ss_pred CCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCC---ceEEeccCCCccCCC
Q 012701 322 LETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERR---LWFTIGRLPERANSM 396 (458)
Q Consensus 322 ~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~---~W~~v~~lp~~~~~~ 396 (458)
..++ .+..+..|...... .|...........++... ++++|++-| +..|+||..+. .|...+.+|....
T Consensus 88 ~~~~-~~~~~gyPk~i~~~-~G~p~~~~~~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~P~~i~~~~~g~p~~vd-- 161 (219)
T 1hxn_A 88 TKGG-YTLVNGYPKRLEKE-LGSPPVISLEAVDAAFVCPGSSRLHIMAG--RRLWWLDLKSGAQATWTELPWPHEKVD-- 161 (219)
T ss_dssp CSSS-CEECTTCCEEHHHH-HCCCSSCCCSCCCEEECCTTCCEEEEEET--TEEEEEEGGGGGGCCCEEECCSCSCCS--
T ss_pred CCCC-ceecCCCCeehhhc-cCCCCcccccccceeEEecCCCEEEEEeC--CEEEEEeCCCCceEhhhcCCCCCCCcC--
Confidence 7542 12222222111100 000000000001123332 689999955 68999997542 3443333333321
Q ss_pred CcccEEEEE-----------eCCEEEEEcCC
Q 012701 397 NGWGLAFRA-----------CGDRLIVIGGP 416 (458)
Q Consensus 397 ~~~~~a~~~-----------~~~~lyv~GG~ 416 (458)
.|+.. .++.+|+|-|.
T Consensus 162 ----Aa~~~~~~~~~~~~~~~~~~~YFFkg~ 188 (219)
T 1hxn_A 162 ----GALCMEKPLGPNSCSTSGPNLYLIHGP 188 (219)
T ss_dssp ----EEEEESSCSSSCCSCSSSCEEEEEETT
T ss_pred ----EEEEccccccccceeccCCeEEEEECC
Confidence 44442 34679999874
No 306
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=71.59 E-value=66 Score=30.00 Aligned_cols=64 Identities=3% Similarity=-0.060 Sum_probs=38.4
Q ss_pred CCEEEEEccccCCCCcccce-EEEEECCCCceEEcCCCCCC-CCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEcCCCeE
Q 012701 297 DGKFYVIGGIGGSDSKVLTC-GEEYDLETETWTEIPNMSPA-RGGAARGTEMPASAEAPPLVAVV-NNELYAADYADMEV 373 (458)
Q Consensus 297 ~g~lyv~GG~~~~~~~~~~~-v~~yd~~~~~W~~i~~~p~~-r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg~~~~v 373 (458)
+|++++.|+.+ .. +.+||+.+.+-.. .+... .... -..++.. ++++++.++.++.|
T Consensus 206 ~g~~l~s~s~d-------~~~v~iwd~~~~~~~~--~~~~g~h~~~------------v~~~~~s~~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 206 KSDMVATCSQD-------GTIIRVFKTEDGVLVR--EFRRGLDRAD------------VVDMKWSTDGSKLAVVSDKWTL 264 (355)
T ss_dssp TSSEEEEEETT-------CSEEEEEETTTCCEEE--EEECTTCCSC------------EEEEEECTTSCEEEEEETTCEE
T ss_pred CCCEEEEEeCC-------CCEEEEEECCCCcEEE--EEEcCCCCCc------------EEEEEECCCCCEEEEEECCCEE
Confidence 67788887765 34 7889998765321 11100 1111 0022222 67888888888999
Q ss_pred EEEeCCCC
Q 012701 374 RKYDKERR 381 (458)
Q Consensus 374 ~~yd~~~~ 381 (458)
.+||..+.
T Consensus 265 ~iw~~~~~ 272 (355)
T 3vu4_A 265 HVFEIFND 272 (355)
T ss_dssp EEEESSCC
T ss_pred EEEEccCC
Confidence 99998754
No 307
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=70.90 E-value=29 Score=35.79 Aligned_cols=211 Identities=11% Similarity=0.065 Sum_probs=110.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEe----CCEEEEEeccCC----C-------CCcc
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASL----GEIAILAGGSDL----E-------GNIL 265 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~----~-------~~~~ 265 (458)
|..+||.-. ..+.|.+.|+.+.+=.++-.+|....-|+.+.. ++++|+.+.... + ..+.
T Consensus 101 G~~lfVnd~------~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 101 GRFLFMNDK------ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEET------TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCEEEEEcC------CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 457777542 456799999999875554466666666776652 568888864311 1 1234
Q ss_pred CeEEEEeCCCCc--EEEc-CCCCCCCcceeEEEECC-EEEEEccccC-------------------------------CC
Q 012701 266 SSAEMYNSETQT--WKVL-PSMKNPRKMCSGVFMDG-KFYVIGGIGG-------------------------------SD 310 (458)
Q Consensus 266 ~~v~~yd~~t~~--W~~~-~~~p~~r~~~~~~~~~g-~lyv~GG~~~-------------------------------~~ 310 (458)
+.+-+.|.++.+ |+.. +.-| ....+..+| .+|+.- ++. ..
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~p----d~~~~spdGk~~~vt~-~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGNL----DNCDADYEGKWAFSTS-YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSCC----CCEEECSSSSEEEEEE-SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred ceEEEEECCCCeEEEEEEeCCCc----cceEECCCCCEEEEEe-cCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 578889999875 5533 1111 111122222 223321 110 01
Q ss_pred CcccceEEEEECCCCceEE-cCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCc-e---
Q 012701 311 SKVLTCGEEYDLETETWTE-IPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRL-W--- 383 (458)
Q Consensus 311 ~~~~~~v~~yd~~~~~W~~-i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~-W--- 383 (458)
....+.+-+.|+.+.+... +..+|.+..-+ ++.+. +| .+|+.+...+.|.+||..+.. +
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~Ph--------------Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPH--------------GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCC--------------CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCce--------------EEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 1223457778887733222 11223222223 34443 44 578888788999999998652 1
Q ss_pred ------EEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCCCCCeeeEEEeecCC------CCCCceEeeccCC
Q 012701 384 ------FTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKASGEGFIELNSWVPSE------GPPQWNLLARKQS 446 (458)
Q Consensus 384 ------~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~------~~~~W~~l~~~p~ 446 (458)
..+..++..... ++.++. -++.+|+.-..++ .+-.|+++. +...+..+..++.
T Consensus 316 ~l~~~~~v~~~v~vG~gP---~h~aF~-~dG~aY~t~~lds------qV~kwdi~~a~~~~~g~~~~~vi~kidV 380 (595)
T 1fwx_A 316 NADPRSAVVAEPELGLGP---LHTAFD-GRGNAYTSLFLDS------QVVKWNIEDAIRAYAGEKVDPIKDKLDV 380 (595)
T ss_dssp CCCGGGGEEECCBCCSCE---EEEEEC-TTSEEEEEETTTT------EEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred ccCcccceEEEcCCCCCc---ceEEEC-CCCeEEEEEecCC------cEEEEEhhHhhhhhcccccceeEEEeec
Confidence 123333333221 234443 3458888765432 455577643 1123566655554
No 308
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=70.89 E-value=87 Score=31.09 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCeEEEEeCC-CCceEEeccCCC
Q 012701 360 NNELYAADYADMEVRKYDKE-RRLWFTIGRLPE 391 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~-~~~W~~v~~lp~ 391 (458)
+..||+.....+.|.+||+. ..+.+.++.++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 34688887667899999985 445555554443
No 309
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=70.34 E-value=55 Score=28.58 Aligned_cols=136 Identities=10% Similarity=0.108 Sum_probs=68.4
Q ss_pred eEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEE--c----CCCCCCCcceeEEE-E--CCEEEEEccccCCCCccc
Q 012701 244 GSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKV--L----PSMKNPRKMCSGVF-M--DGKFYVIGGIGGSDSKVL 314 (458)
Q Consensus 244 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~--~----~~~p~~r~~~~~~~-~--~g~lyv~GG~~~~~~~~~ 314 (458)
+++.+++.+|++=| ..+++++.....+.. + +.+|. ..-+|+ . ++++|++-|.
T Consensus 28 Ai~~~~g~~y~Fkg--------~~~wr~~~~~~~~~p~~I~~~wp~Lp~---~iDAa~~~~~~~~iyfFkG~-------- 88 (207)
T 1pex_A 28 AITSLRGETMIFKD--------RFFWRLHPQQVDAELFLTKSFWPELPN---RIDAAYEHPSHDLIFIFRGR-------- 88 (207)
T ss_dssp EEEEETTEEEEEET--------TEEEEECSSSSCCEEEEHHHHCTTSCS---SCCEEEEETTTTEEEEEETT--------
T ss_pred EEEeCCCcEEEEEC--------CEEEEEeCCCcCCCceehhHhccCCCC---CccEEEEeccCCcEEEEccC--------
Confidence 34457899999965 346666655433321 1 23442 222333 3 6999999663
Q ss_pred ceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceE-----Ee-
Q 012701 315 TCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWF-----TI- 386 (458)
Q Consensus 315 ~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~-----~v- 386 (458)
.+++|+..+ ..+..|..... .| .|.....-.++... ++++|++-| +..|+||..+++=. .+
T Consensus 89 -~~w~~~~~~----~~~gyPk~I~~--~G--lP~~~~~IDAA~~~~~~gk~yfFkG--~~ywr~d~~~~~~d~gyPr~i~ 157 (207)
T 1pex_A 89 -KFWALNGYD----ILEGYPKKISE--LG--LPKEVKKISAAVHFEDTGKTLLFSG--NQVWRYDDTNHIMDKDYPRLIE 157 (207)
T ss_dssp -EEEEESTTC----CCTTCSEESTT--TT--CCTTCCCCCEEEECTTTSEEEEEET--TEEEEEETTTTEECSSCCCBHH
T ss_pred -EEEEEeCCe----eccCCceeccc--cC--CCCCCccccEEEEeCCCCEEEEEeC--CEEEEEeCcCccccCCCCccHH
Confidence 367776322 11111211110 01 01000000123332 489999954 78999998765311 01
Q ss_pred ---ccCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 387 ---GRLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 387 ---~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
+.+|... -.|+ ..++.+|+|-|.
T Consensus 158 ~~~~Gip~~i------DaAf-~~~g~~YfFkg~ 183 (207)
T 1pex_A 158 EDFPGIGDKV------DAVY-EKNGYIYFFNGP 183 (207)
T ss_dssp HHSTTSCSCC------SEEE-EETTEEEEEETT
T ss_pred HcCCCCCCCc------cEEE-EcCCcEEEEECC
Confidence 1222211 2444 468999999874
No 310
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=70.15 E-value=1.3e+02 Score=32.63 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=56.4
Q ss_pred CEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCCceE
Q 012701 250 EIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWT 328 (458)
Q Consensus 250 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~ 328 (458)
+++.+.|+.+ ..+.+||..+++-...-. ....-.++++ -+++..+.|+.+ ..|..||+.+..-.
T Consensus 69 g~~L~S~s~D------~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~d-------g~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 69 GIYLVVINAK------DTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQN-------GSMIVYDIDRDQLS 133 (902)
T ss_dssp TTEEEEEETT------CEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETT-------SCEEEEETTTTEEE
T ss_pred CCEEEEEECc------CeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCC-------CcEEEEECCCCccc
Confidence 4444555543 568889998875321111 1111111222 256666666654 35788999877642
Q ss_pred EcC--------CCCCCCCCCCCCCCCCCCcCCCCEEEEEC--CEEEEEEcCCCeEEEEeCCCCceE
Q 012701 329 EIP--------NMSPARGGAARGTEMPASAEAPPLVAVVN--NELYAADYADMEVRKYDKERRLWF 384 (458)
Q Consensus 329 ~i~--------~~p~~r~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~gg~~~~v~~yd~~~~~W~ 384 (458)
... ..+....+. -.+++... +.++++|+..+.+ +||..+++-.
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~------------V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~ 186 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSP------------IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK 186 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCC------------CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE
T ss_pred cceeccccccccccccCCCC------------eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE
Confidence 110 001111111 11444443 3677788888889 9999887643
No 311
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=69.52 E-value=59 Score=28.62 Aligned_cols=148 Identities=16% Similarity=0.137 Sum_probs=74.4
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCC----------CceeeCCCCCCCCceeeEEE--eCCEEEEEeccCCCCC
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILT----------NSWSSGMRMNAPRCLFGSAS--LGEIAILAGGSDLEGN 263 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----------~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~ 263 (458)
+++.+.+++|+|-|. .+|+++... ..| +.+|. ... ++.. .++++|++-|
T Consensus 35 Ai~~~~g~~~fFkg~--------~~Wr~~~~~~~~~~P~~I~~~w---p~lp~-~ID-AA~~~~~~~k~yfFkG------ 95 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFW---PELPE-KID-AVYEAPQEEKAVFFAG------ 95 (218)
T ss_dssp EEEEETTEEEEEETT--------EEEEESSTTSCCEEEEEGGGTC---TTSCS-CCS-EEEEETTTTEEEEEET------
T ss_pred EEEeCCCcEEEEECC--------EEEEEeCCCCccCCCEEHHHhc---CCCCC-Ccc-EEEEECCCCEEEEEeC------
Confidence 455679999999654 355554332 223 22332 111 2222 2689999966
Q ss_pred ccCeEEEEeCCCCc---EEEcCC--CCCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCC
Q 012701 264 ILSSAEMYNSETQT---WKVLPS--MKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSP 335 (458)
Q Consensus 264 ~~~~v~~yd~~t~~---W~~~~~--~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~ 335 (458)
+..|+||..+-. =+.+.. +|.......+|+. ++++|++-|. ..++||..+++-. +.-|.
T Consensus 96 --~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---------~ywr~d~~~~~v~--~gyPr 162 (218)
T 1gen_A 96 --NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMD--PGFPK 162 (218)
T ss_dssp --TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEEC--SSCCE
T ss_pred --CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---------EEEEEECcccccc--CCCCc
Confidence 567888852110 011111 2221112334433 6899999663 4789998776321 11111
Q ss_pred CCCCCCCCCCCCCCcCCCCEEEEEC--CEEEEEEcCCCeEEEEeCCCCc
Q 012701 336 ARGGAARGTEMPASAEAPPLVAVVN--NELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 336 ~r~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.....-+|..- . ..++...+ +.+|++-| +..++||..+..
T Consensus 163 ~i~~~w~g~p~--~---idaAf~~~~~g~~YfFkg--~~y~~~~~~~~~ 204 (218)
T 1gen_A 163 LIADAWNAIPD--N---LDAVVDLQGGGHSYFFKG--AYYLKLENQSLK 204 (218)
T ss_dssp EHHHHSSSCCS--S---CSEEEECTTTCEEEEEET--TEEEEEETTEEE
T ss_pred chhhccCCCCC--C---CCEEEEEcCCCcEEEEEC--CEEEEEECCcee
Confidence 10000000000 0 01344444 89999944 789999986654
No 312
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=69.01 E-value=41 Score=33.39 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceE-----Eec----cCCCccCCCCcccEEEEEeCCEEEEEcCC
Q 012701 360 NNELYAADYADMEVRKYDKERRLWF-----TIG----RLPERANSMNGWGLAFRACGDRLIVIGGP 416 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~-----~v~----~lp~~~~~~~~~~~a~~~~~~~lyv~GG~ 416 (458)
++++|+|-| +..|+||..+++-. .|. .+|... -.|+ ..++++|+|-|.
T Consensus 367 ~~k~yfFkG--~~yw~yd~~~~~~~~gYPk~I~~~fpgip~~i------DAA~-~~~g~~YFFkg~ 423 (450)
T 1su3_A 367 TGKTYFFVA--NKYWRYDEYKRSMDPGYPKMIAHDFPGIGHKV------DAVF-MKDGFFYFFHGT 423 (450)
T ss_dssp TTEEEEEET--TEEEEEETTTTEECSSCSEEHHHHSTTSCSCC------SEEE-EETTEEEEEETT
T ss_pred CCeEEEEeC--CEEEEEeCCCccccCCCCcchhhcCCCCCCCc------cEEE-EcCCeEEEEeCC
Confidence 689999955 79999998654321 121 222222 1333 468999999874
No 313
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=68.96 E-value=92 Score=32.59 Aligned_cols=148 Identities=11% Similarity=-0.061 Sum_probs=80.6
Q ss_pred ceEEEEecCCC--c-EEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCC--CceeeCCCCCCCC
Q 012701 166 LEWEAFDPIRR--R-WMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILT--NSWSSGMRMNAPR 240 (458)
Q Consensus 166 ~~~~~yDp~~~--~-W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~p~~r 240 (458)
..++.+|..+. . |..+..-.... ...+..-++.||+..... .....++++|..+ ..|+.+-+-...
T Consensus 294 ~~l~~~d~~~~~~~~~~~l~~~~~~~-----~~~~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~l~~~~~~- 364 (741)
T 1yr2_A 294 NTVHVARVTNGKIGPVTALIPDLKAQ-----WDFVDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRFDTVVPESKD- 364 (741)
T ss_dssp CEEEEEEEETTEECCCEEEECSSSSC-----EEEEEEETTEEEEEECTT---CTTCEEEEEECSSSSCEEEEEECCCSS-
T ss_pred ceEEEEECCCCCCcccEEecCCCCce-----EEEEeccCCEEEEEECCC---CCCCEEEEEeCCCCccccEEEecCCCC-
Confidence 47888888776 5 76664322211 011223577788775331 1245699999988 578876432211
Q ss_pred ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECC-EEEEEccccCCCCcccceE
Q 012701 241 CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDG-KFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 241 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g-~lyv~GG~~~~~~~~~~~v 317 (458)
........++.|++....++ ...++++|+..+.-+.+. .|.... ...+. -++ .|++.... ...-..+
T Consensus 365 ~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~-v~~~~~s~d~~~l~~~~ss----~~~P~~i 434 (741)
T 1yr2_A 365 NLESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIGS-ASGLSGRPGDRHAYLSFSS----FTQPATV 434 (741)
T ss_dssp EEEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSCE-EEEEECCBTCSCEEEEEEE----TTEEEEE
T ss_pred eEEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCeE-EEEeecCCCCCEEEEEEcC----CCCCCEE
Confidence 12223344788888766553 356888887655444442 221111 11121 133 34433211 1234578
Q ss_pred EEEECCCCceEEcCC
Q 012701 318 EEYDLETETWTEIPN 332 (458)
Q Consensus 318 ~~yd~~~~~W~~i~~ 332 (458)
+.||+.+++.+.+..
T Consensus 435 ~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 435 LALDPATAKTTPWEP 449 (741)
T ss_dssp EEEETTTTEEEECSC
T ss_pred EEEECCCCcEEEEec
Confidence 999999988777654
No 314
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=68.67 E-value=29 Score=35.74 Aligned_cols=269 Identities=10% Similarity=0.005 Sum_probs=138.3
Q ss_pred eeEEEEEecc-ceEEEEecCCCcEEeCCCCCCCccccccCceEE----EeCCEEEEEcCCC-----------CCcCccce
Q 012701 156 EHWVYFSCHL-LEWEAFDPIRRRWMHLPRMTSNECFMCSDKESL----AVGTELLVFGREL-----------TAHHISHV 219 (458)
Q Consensus 156 ~~~l~~~~~~-~~~~~yDp~~~~W~~l~~~p~~~~~~~~~~~~~----~~~~~lyv~GG~~-----------~~~~~~~~ 219 (458)
..|+|++... ..+.+.|+.+.+-..+-.+|..... +.++ --++.||+-+... ......+.
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~p----hg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGI----HGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSE----EEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCC----cceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 4588886543 4688999999874443234332211 1122 2367788775321 11234557
Q ss_pred EEEEEcCCCc--eeeC-CCCCCCCceeeEEEe-CCEEEEEeccC-------------------------------CCCCc
Q 012701 220 IYRYSILTNS--WSSG-MRMNAPRCLFGSASL-GEIAILAGGSD-------------------------------LEGNI 264 (458)
Q Consensus 220 v~~yd~~t~~--W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~-------------------------------~~~~~ 264 (458)
+-+.|..|.+ |+.. +. .| ....+.. +..+|+.--.. +....
T Consensus 177 vtvID~~t~~v~~qI~Vgg--~p--d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG--NL--DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp EEEEETTTTEEEEEEEESS--CC--CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEEEECCCCeEEEEEEeCC--Cc--cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 8889998864 4432 11 11 1111111 33444442111 11122
Q ss_pred cCeEEEEeCCCCcEEE-cCCCCCCCcceeEEEE-CCE-EEEEccccCCCCcccceEEEEECCCCc-eE---------EcC
Q 012701 265 LSSAEMYNSETQTWKV-LPSMKNPRKMCSGVFM-DGK-FYVIGGIGGSDSKVLTCGEEYDLETET-WT---------EIP 331 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~g~-lyv~GG~~~~~~~~~~~v~~yd~~~~~-W~---------~i~ 331 (458)
.+.+-+.|..+.+.+. +..+|.+..-|+..+. ||+ +|+.+.. .+.+.+||..+.+ +. .+.
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-------s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-------SPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT-------SSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred ECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC-------CCeEEEEECcccccccccccCcccceEE
Confidence 4568888988833222 2234444455555543 666 5554432 3578899998642 10 011
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCC--------CceEEeccCCCccCC-CC--c
Q 012701 332 NMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKER--------RLWFTIGRLPERANS-MN--G 398 (458)
Q Consensus 332 ~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~--------~~W~~v~~lp~~~~~-~~--~ 398 (458)
.++. +..|..+.+ +|.+|+.-..++.|.+||.++ +.+..+..++..-.. +. .
T Consensus 326 ~v~v---------------G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 326 EPEL---------------GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp CCBC---------------CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred EcCC---------------CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 1111 112234444 568899888889999999877 447777766653220 00 0
Q ss_pred ccEEEEEeCCEEEEEcCCCCCCC-----Ceee-EEEeecCCCCCCceEeeccCCCceeeeEEEe
Q 012701 399 WGLAFRACGDRLIVIGGPKASGE-----GFIE-LNSWVPSEGPPQWNLLARKQSANFVYNCAVM 456 (458)
Q Consensus 399 ~~~a~~~~~~~lyv~GG~~~~~~-----~~~~-~~~~~~~~~~~~W~~l~~~p~~~~~~~~~v~ 456 (458)
.+.++..-+..||+.-+..+... -..+ -..++. +..+-+.+.+.|....-|.++++
T Consensus 391 ~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di--s~~~m~lv~d~p~~~ePh~~~i~ 452 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI--SGDKMVLVHDGPTFAEPHDAIAV 452 (595)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC--SSSSCEEEEEEEESSCCCCEEEE
T ss_pred cceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc--CCCcEEEEEEEcCCCCCCceEEc
Confidence 01111223557777765542110 1111 234555 45677888887776666777664
No 315
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=66.57 E-value=82 Score=29.19 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=64.6
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCC-C---CCcceeEEEE--CCEEEEEccccCCCCcccceEEEEEC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMK-N---PRKMCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDL 322 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~---~r~~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~ 322 (458)
++++||.......+. ..++.++ +++-...+... . .......+.+ +|+|||+.-.. .......+.+||+
T Consensus 27 ~g~~~v~~~~~~~~~--~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~--~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPE--MQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN--QSKSVPKLVAWDT 100 (343)
T ss_dssp TSCEEEEECGGGCCS--CSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH--HHTSCCEEEEEET
T ss_pred CCCEEEEeCCCCCCc--eEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC--CcCCCCeEEEEEC
Confidence 678888853211111 4677777 55544443211 1 1122333344 58999984210 0001246899999
Q ss_pred CCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEc---CCCeEEEEeCCCC-ceEEe
Q 012701 323 ETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADY---ADMEVRKYDKERR-LWFTI 386 (458)
Q Consensus 323 ~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg---~~~~v~~yd~~~~-~W~~v 386 (458)
.+++-...-.++...... ...+..+++- ++.+|+... ....|.+||+.++ .|+.+
T Consensus 101 ~tg~~~~~~~~~~~~~~~---------~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLS---------NSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp TTTEEEEEEECCTTTSCT---------TCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred CCCeEEEEEECChhhccc---------ccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 988743221222111000 0111255665 579999976 5689999999865 46655
No 316
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.99 E-value=1.4e+02 Score=31.69 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=112.5
Q ss_pred CcEEeCCCCCCCccccccCceEEEe----CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC-----CCceeeEE
Q 012701 176 RRWMHLPRMTSNECFMCSDKESLAV----GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA-----PRCLFGSA 246 (458)
Q Consensus 176 ~~W~~l~~~p~~~~~~~~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-----~r~~~~~~ 246 (458)
.+|..+.+....+. ..+++ .+.+|+.+ ....+++-+-.-.+|+.+...+. .+.....+
T Consensus 4 ~~W~~~~~~~~g~i------~~i~~~p~~~~~~~a~~-------~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia 70 (789)
T 1sqj_A 4 YEFKNVAIGGGGYI------TGIVAHPKTKDLLYART-------DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIA 70 (789)
T ss_dssp CEEEECCCCBCSCE------EEEEECSSSTTCEEEEE-------SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEE
T ss_pred ccceEccCCCCCcE------EEEEECCCCCCEEEEEe-------cCCCEEEecCCCCCeeECccCCCcccccCCceeEEE
Confidence 47888876332221 11232 24566643 22347777777789999865332 12233444
Q ss_pred Ee---CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC-CC-----CCC-cceeEEEE---CCEEEEEccccCCCCcc
Q 012701 247 SL---GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS-MK-----NPR-KMCSGVFM---DGKFYVIGGIGGSDSKV 313 (458)
Q Consensus 247 ~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~p-----~~r-~~~~~~~~---~g~lyv~GG~~~~~~~~ 313 (458)
+. .+.+|+..|...... ...+++=+-.-.+|+.+.. ++ ..| ..+..++. .+.+|+. ...
T Consensus 71 ~dp~~~~~i~~~~g~~~~~~-~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g-~~~------ 142 (789)
T 1sqj_A 71 LDPNNPDRLYLAQGRYVGDE-WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRT------ 142 (789)
T ss_dssp EETTEEEEEEEEECSCTTSS-CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEE-CSS------
T ss_pred ECCCCCCEEEEEeCccCCCc-ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEE-ecc------
Confidence 33 247888766421111 1233322333457998742 11 112 22334443 3566663 211
Q ss_pred cceEEEEECCCCceEEcCCCCCCC-CCCCCCCCCCCCcCCCCEEEEE----CCEEEEEEcCCCeEEEEeCCCCceEEecc
Q 012701 314 LTCGEEYDLETETWTEIPNMSPAR-GGAARGTEMPASAEAPPLVAVV----NNELYAADYADMEVRKYDKERRLWFTIGR 388 (458)
Q Consensus 314 ~~~v~~yd~~~~~W~~i~~~p~~r-~~~~~~~~~~~~~~~~~~~~~~----~~~lyv~gg~~~~v~~yd~~~~~W~~v~~ 388 (458)
..+++=+-.-.+|+.+..+|... ... ....+.+ .+.||+.......+++=.-..++|+.+..
T Consensus 143 -~gl~~S~DgG~TW~~~~~~~~~~~~~~------------~~~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~ 209 (789)
T 1sqj_A 143 -EGIWKSSDRAKTWTNVTSIPDAFTNGI------------GYTSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAG 209 (789)
T ss_dssp -SCEEEESSTTSSCEEETTSCCCCSTTT------------CEEEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTT
T ss_pred -CCEEEECCCCcccCCCccCccccCCCC------------CeEEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCC
Confidence 12333333456899987644210 001 0022232 24677765432456554445678999875
Q ss_pred CCCcc-------C-----C-CCcccEEEEEeCCEEEEEcCCC-CCCCCeeeEEEeecCCCCCCceEeeccCC
Q 012701 389 LPERA-------N-----S-MNGWGLAFRACGDRLIVIGGPK-ASGEGFIELNSWVPSEGPPQWNLLARKQS 446 (458)
Q Consensus 389 lp~~~-------~-----~-~~~~~~a~~~~~~~lyv~GG~~-~~~~~~~~~~~~~~~~~~~~W~~l~~~p~ 446 (458)
+|... . . ...+.+++...++.||+..+.. .... -..-.+|..+....+|+.+...|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~-g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 210 QPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWG-VTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp CCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSC-CCCCCEEEEETTTCCEEECCCCTT
T ss_pred CcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCC-CCCceEEEEeCCCCceEECcCCCC
Confidence 55321 0 0 0001223322378888873211 1100 011235666666789999976553
No 317
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=65.19 E-value=59 Score=33.57 Aligned_cols=59 Identities=3% Similarity=-0.215 Sum_probs=32.5
Q ss_pred cceEEEEEcCCCceeeCCCCCCC--CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP 282 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 282 (458)
...++++|..+++-+.+...... +....+.+-+++.++++.. ..++++|..++.-..+.
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEEE
T ss_pred eeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEEe
Confidence 46899999999876666543221 1111122224433333331 36888888877655543
No 318
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=64.88 E-value=1.3e+02 Score=31.06 Aligned_cols=172 Identities=12% Similarity=-0.021 Sum_probs=86.7
Q ss_pred cceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCC------CCccCeEEEEeCCCCcE--EEcCCCCC--
Q 012701 217 SHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLE------GNILSSAEMYNSETQTW--KVLPSMKN-- 286 (458)
Q Consensus 217 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~------~~~~~~v~~yd~~t~~W--~~~~~~p~-- 286 (458)
...++++|..|++..... ++..+....+-..+..||+...-... ......+++++..+..= +.+-..+.
T Consensus 154 ~~~i~v~dl~tg~~~~~~-~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 154 WREIHLMDVESKQPLETP-LKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEEETTTCSEEEEE-EEEEESCCCEEETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred eEEEEEEECCCCCCCccc-cCCceeccEEEeCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 357999999999875531 11111122233323345444322110 02346688888877642 12222221
Q ss_pred CCcceeE-EEECCEEEEEccccCCCCcccceEEEEECCCC--ceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEE
Q 012701 287 PRKMCSG-VFMDGKFYVIGGIGGSDSKVLTCGEEYDLETE--TWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNEL 363 (458)
Q Consensus 287 ~r~~~~~-~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~--~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~l 363 (458)
+...... ..-+|+..++....+ ...+.++.+|+.+. .|..+..-.... .. .+...++.|
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~---~~~~~i~~~d~~~~~~~~~~l~~~~~~~-~~--------------~~~~~g~~l 294 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANS---TSGNRLYVKDLSQENAPLLTVQGDLDAD-VS--------------LVDNKGSTL 294 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESS---SSCCEEEEEETTSTTCCCEEEECSSSSC-EE--------------EEEEETTEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccC---CCCcEEEEEECCCCCCceEEEeCCCCce-EE--------------EEeccCCEE
Confidence 2222222 233666544433221 12257899998765 677765321111 01 133457889
Q ss_pred EEEEcC---CCeEEEEeCCCC---ceEEeccCCCccCCCCcccEEEEEeCCEEEEEc
Q 012701 364 YAADYA---DMEVRKYDKERR---LWFTIGRLPERANSMNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 364 yv~gg~---~~~v~~yd~~~~---~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~G 414 (458)
|+.... ...|+++|+.+. .|+.+.+-.. .. ..+...++.|++..
T Consensus 295 ~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~-----~~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 295 YLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ--QV-----LTVHSGSGYLFAEY 344 (693)
T ss_dssp EEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS--SC-----EEEEEETTEEEEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCccccEEEecCCC--CE-----EEEEEECCEEEEEE
Confidence 988643 368999998763 4887643221 11 13444566665544
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=64.50 E-value=1.3e+02 Score=30.87 Aligned_cols=129 Identities=8% Similarity=-0.021 Sum_probs=75.1
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcceeEEE--ECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMCSGVF--MDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++.||+.-- ....+.++++.....+.+..-..... ...++ .+++||+.-. ....|++.++....
T Consensus 360 ~~~ly~sD~------~~~~I~r~~~~g~~~~~v~~~~~~~p-~GlAvD~~~~~lY~tD~-------~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 360 EGYIYWTDD------EVRAIRRSFIDGSGSQFVVTAQIAHP-DGIAVDWVARNLYWTDT-------GTDRIEVTRLNGTM 425 (619)
T ss_dssp TTEEEEEET------TTTEEEEEETTSCSCEEEECSSCSCC-CEEEEETTTTEEEEEET-------TTTEEEEEETTSCS
T ss_pred CCeEEEEeC------CCCeEEEEEcCCCccEEEEECCCCCc-CceEEecccCcEEEEeC-------CCCcEEEEeCCCCe
Confidence 589999832 23678999998766665543221111 13333 3789999832 23578889887654
Q ss_pred eEEcC--CCCCCCCCCCCCCCCCCCcCCCCEEEEE--CCEEEEEEc-CCCeEEEEeCCCCceEEec--cCCCccCCCCcc
Q 012701 327 WTEIP--NMSPARGGAARGTEMPASAEAPPLVAVV--NNELYAADY-ADMEVRKYDKERRLWFTIG--RLPERANSMNGW 399 (458)
Q Consensus 327 W~~i~--~~p~~r~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~gg-~~~~v~~yd~~~~~W~~v~--~lp~~~~~~~~~ 399 (458)
-+.+. .+..|+ .+++. +|.||+... ....|++.+.+...=+.+. .+..+.
T Consensus 426 ~~~l~~~~l~~P~-----------------~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~------ 482 (619)
T 3s94_A 426 RKILISEDLEEPR-----------------AIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPN------ 482 (619)
T ss_dssp CEEEECTTCCSEE-----------------EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE------
T ss_pred EEEEEECCCCCee-----------------eEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCe------
Confidence 33332 122222 56665 589999973 4478999988754433332 222221
Q ss_pred cEEEEEeCCEEEEEc
Q 012701 400 GLAFRACGDRLIVIG 414 (458)
Q Consensus 400 ~~a~~~~~~~lyv~G 414 (458)
|+++...+++||+.=
T Consensus 483 GlalD~~~~~LY~aD 497 (619)
T 3s94_A 483 GLALDYDEGKIYWGD 497 (619)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred eeEEcccCCEEEEEE
Confidence 344443467888874
No 320
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=63.81 E-value=1e+02 Score=29.19 Aligned_cols=231 Identities=12% Similarity=0.114 Sum_probs=109.8
Q ss_pred EEEEEe-ccceEEEEecCCCcEEeCCCCCC-----CccccccCceEEEe-----CCEEEEEcC---CC----CCcCccce
Q 012701 158 WVYFSC-HLLEWEAFDPIRRRWMHLPRMTS-----NECFMCSDKESLAV-----GTELLVFGR---EL----TAHHISHV 219 (458)
Q Consensus 158 ~l~~~~-~~~~~~~yDp~~~~W~~l~~~p~-----~~~~~~~~~~~~~~-----~~~lyv~GG---~~----~~~~~~~~ 219 (458)
.+|++. ....+..+||..+.=..+ ..+. ....+. ..+.+ .+.|+|+-- .. ......+.
T Consensus 26 ~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~---sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~ 101 (334)
T 2p9w_A 26 VFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQM---SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASS 101 (334)
T ss_dssp EEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEE---EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCE
T ss_pred EEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCccee---eEEEEeccCCCCcEEEEEcccccccccccccCCCCE
Confidence 345543 345788899986654343 2222 111111 12333 568888621 10 01113567
Q ss_pred EEEEEcC---CCc--eee-CCCCCCC-------Cc-eeeEEEe--CCEEEEEeccCCCCCccCeEEEEeCCCCc---EEE
Q 012701 220 IYRYSIL---TNS--WSS-GMRMNAP-------RC-LFGSASL--GEIAILAGGSDLEGNILSSAEMYNSETQT---WKV 280 (458)
Q Consensus 220 v~~yd~~---t~~--W~~-~~~~p~~-------r~-~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~~---W~~ 280 (458)
+.+||+. |++ |.. ++..... +. ...-..+ .+.+||.+... ...++++++.... |-.
T Consensus 102 v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~-----~~~I~rV~pdG~~~~~~~~ 176 (334)
T 2p9w_A 102 FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG-----MPAIARVSADGKTVSTFAW 176 (334)
T ss_dssp EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES-----SCEEEEECTTSCCEEEEEE
T ss_pred EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC-----CCeEEEEeCCCCEEeeeee
Confidence 9999988 553 432 1111110 21 1222222 57999986643 1568999987553 543
Q ss_pred cCCCCCCCcceeEE-EE-CC-EEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEE-
Q 012701 281 LPSMKNPRKMCSGV-FM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLV- 356 (458)
Q Consensus 281 ~~~~p~~r~~~~~~-~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~- 356 (458)
-.+....+.+..+. +. +| .|++..+ . ..+++||+.+-... .++..|.+. .+. ...+..+
T Consensus 177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-------g~L~~fD~~~pv~~---~v~~~~~G~----~~~--~~~~dgil 239 (334)
T 2p9w_A 177 ESGNGGQRPGYSGITFDPHSNKLIAFGG-P-------RALTAFDVSKPYAW---PEPVKINGD----FGT--LSGTEKIV 239 (334)
T ss_dssp CCCCSSSCCSCSEEEEETTTTEEEEESS-S-------SSEEEEECSSSSCC---CEECEESSC----CCC--CTTEEEEE
T ss_pred cCCCcccccCcceEEEeCCCCEEEEEcC-C-------CeEEEEcCCCCcce---eecccccCC----ccc--ccCccccc
Confidence 33333345555444 44 45 5555543 3 35789998742110 122211111 000 0001122
Q ss_pred E-EECCEEEEEE-cCCCeEEEEeCCCCceEEec---cCCCccCCCCcccEEEEE---eCCEEEEEcCCC
Q 012701 357 A-VVNNELYAAD-YADMEVRKYDKERRLWFTIG---RLPERANSMNGWGLAFRA---CGDRLIVIGGPK 417 (458)
Q Consensus 357 ~-~~~~~lyv~g-g~~~~v~~yd~~~~~W~~v~---~lp~~~~~~~~~~~a~~~---~~~~lyv~GG~~ 417 (458)
. -.+|++.++. ...+.+...+.+ + |+... ..|.... ..++..+.++ .+++||++.+.-
T Consensus 240 p~~~~G~vllV~~~~~~~~~l~S~D-g-W~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 240 TVPVGNESVLVGARAPYAISFRSWD-N-WKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp EEEETTEEEEEEEETTEEEEEECSS-T-TSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECCG
T ss_pred ccccCCEEEEEEcCCCCEEEEECCC-C-cceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeeec
Confidence 2 3689885554 334444445543 3 97763 3333211 2233233222 578999998653
No 321
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A
Probab=61.39 E-value=45 Score=29.63 Aligned_cols=101 Identities=8% Similarity=-0.003 Sum_probs=55.5
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEE--cC-------------CCceeeCCCCCCCCceeeEEEe--CCEEEEEeccCCCC
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYS--IL-------------TNSWSSGMRMNAPRCLFGSASL--GEIAILAGGSDLEG 262 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd--~~-------------t~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~ 262 (458)
.++++|+|-|. .+|+|+ +. +..|.-++....+..--++... ++++|++-|
T Consensus 71 ~~g~~~fFKg~--------~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG----- 137 (227)
T 3lp9_A 71 ENNEAFIFYEN--------FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG----- 137 (227)
T ss_dssp STTEEEEEETT--------EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-----
T ss_pred CCCEEEEEeCC--------EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-----
Confidence 58999999664 578888 22 1223333211112111122222 689999976
Q ss_pred CccCeEEEEeCCCCcEEE-----cC-CCCCCC-----cceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 263 NILSSAEMYNSETQTWKV-----LP-SMKNPR-----KMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 263 ~~~~~v~~yd~~t~~W~~-----~~-~~p~~r-----~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
+..++||..+++-.. +. .+|... ..-.+|+. ++++|++-|. ..++||..+.
T Consensus 138 ---~~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg~---------~Ywr~d~~~~ 202 (227)
T 3lp9_A 138 ---DQYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKDD---------HYARVKVTPX 202 (227)
T ss_dssp ---TEEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEETT---------EEEEEECCSS
T ss_pred ---CEEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEECC---------EEEEEECCcc
Confidence 568999987653211 10 122111 12234443 5899999663 4688998776
No 322
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=60.09 E-value=1.5e+02 Score=29.98 Aligned_cols=109 Identities=10% Similarity=0.047 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCC-CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAP-RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK 279 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 279 (458)
++..++.|+. ...+.+||..+.+....-..... ......+..++..++.++.+ ..+..||+.++.-.
T Consensus 250 dg~~l~s~s~------D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d------~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 250 DGTKIASASA------DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISAN------GFINFVNPELGSID 317 (611)
T ss_dssp TSSEEEEEET------TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETT------CCEEEEETTTTEEE
T ss_pred CCCEEEEEeC------CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCC------CcEEEEeCCCCCcc
Confidence 5556666643 45788999988766432211111 11122233355566666654 34677888776522
Q ss_pred EcCCCCCCCcceeEE-E-ECCEEEEEccccCCCCcccceEEEEECCCCceEEc
Q 012701 280 VLPSMKNPRKMCSGV-F-MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI 330 (458)
Q Consensus 280 ~~~~~p~~r~~~~~~-~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i 330 (458)
.. +.........+ + -+++..+.|+.+ ..+..||+.+..-..+
T Consensus 318 ~~--~~gh~~~v~~l~~spdg~~l~s~s~D-------~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 318 QV--RYGHNKAITALSSSADGKTLFSADAE-------GHINSWDISTGISNRV 361 (611)
T ss_dssp EE--ECCCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEC
T ss_pred eE--EcCCCCCEEEEEEeCCCCEEEEEeCC-------CcEEEEECCCCceeee
Confidence 21 11111111222 2 267777777765 3578899988765543
No 323
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=56.53 E-value=1.1e+02 Score=29.86 Aligned_cols=128 Identities=15% Similarity=0.251 Sum_probs=73.2
Q ss_pred CCcEEE--cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcC-----CCCCCCCCCCCCCCCC
Q 012701 275 TQTWKV--LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIP-----NMSPARGGAARGTEMP 347 (458)
Q Consensus 275 t~~W~~--~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~-----~~p~~r~~~~~~~~~~ 347 (458)
...|+. ++..|..-.-|+.+.+++.=|++|=..+.-...--.+..| + +.|..-. .+|.....
T Consensus 269 ~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yf-s--~~~~sp~~~vrr~i~sey~~-------- 337 (670)
T 3ju4_A 269 KSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYF-P--DAFNSPSNYVRRQIPSEYEP-------- 337 (670)
T ss_dssp TSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEE-T--TTTTCTTCCEEEECCGGGCT--------
T ss_pred cCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEe-c--ccccCCcceeeeechhhhcc--------
Confidence 345643 5556655667888888888888876554322222222222 1 1221110 01111110
Q ss_pred CCcCCCCEEEEECCEEEEEEc------CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeCCEEEEEcCCCCC
Q 012701 348 ASAEAPPLVAVVNNELYAADY------ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACGDRLIVIGGPKAS 419 (458)
Q Consensus 348 ~~~~~~~~~~~~~~~lyv~gg------~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~~~lyv~GG~~~~ 419 (458)
..+-|++-.++|.||+..- ..+.+.+-+.....|..+. +|..... -.+.++..++.||+||-.+..
T Consensus 338 --~AsEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slr-fp~nvHh---tnlPFakvgD~l~mFgsERA~ 409 (670)
T 3ju4_A 338 --DASEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLR-FPHNVHH---TTLPFAKVGDDLIMFGSERAE 409 (670)
T ss_dssp --TEEEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEE-CTTCCCS---SCCCEEEETTEEEEEEECSST
T ss_pred --ccccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhhee-ccccccc---cCCCcceeCCEEEEEeccccc
Confidence 1122367778999999842 2257788888888998874 4433321 125678899999999976644
No 324
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=55.46 E-value=1e+02 Score=26.53 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCce-eeCCC--CCCC--CceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCC
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSW-SSGMR--MNAP--RCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSET 275 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~--~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 275 (458)
++++|+|-|. .+|+|+..+-.- +.+.. +|.. ....+....++++|++-| +..++||..+
T Consensus 64 ~~~~yfFkG~--------~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~~ 127 (195)
T 1itv_A 64 SKKLFFFSGR--------QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVKA 127 (195)
T ss_dssp TCCEEEEETT--------EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETTT
T ss_pred CCeEEEEeCC--------EEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCCc
Confidence 6789999664 577777542110 11111 2221 222222223679999966 4678999887
Q ss_pred CcEEE-----c----CCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 276 QTWKV-----L----PSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 276 ~~W~~-----~----~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
++=.. + +.+| ..-.++...+|.+|++-|. ..+.||..+.+
T Consensus 128 ~~~~~gyPr~i~~~w~Gvp--~~idaa~~~~g~~Yffkg~---------~y~~~~~~~~~ 176 (195)
T 1itv_A 128 QMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQDR---------FYWRVSSRSEL 176 (195)
T ss_dssp TEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEETT---------EEEEEECCTTC
T ss_pred ccccCCCccChhhcCCCCC--CCCCEEEEeCCeEEEEeCC---------EEEEEECCccE
Confidence 64211 1 1122 2233455568999999663 36788887665
No 325
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=55.14 E-value=1.4e+02 Score=28.15 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=81.4
Q ss_pred CEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCC------CCce-eeEEEe----CCEEEEEecc----CCCC---C
Q 012701 202 TELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNA------PRCL-FGSASL----GEIAILAGGS----DLEG---N 263 (458)
Q Consensus 202 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~------~r~~-~~~~~~----~~~lyv~GG~----~~~~---~ 263 (458)
+.+|+-- .....|.++|+.++.-..+ .++. +... .+...+ .++|+++.-. +..+ .
T Consensus 25 g~~~vs~------l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~ 97 (334)
T 2p9w_A 25 QVFYQSN------LYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSH 97 (334)
T ss_dssp TEEEEEE------TTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSS
T ss_pred CEEEEEe------ccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccC
Confidence 5566543 1446788899986654333 2221 2222 444552 4688885221 1001 1
Q ss_pred ccCeEEEEeCC---CC--cEEE-cCCCCC------C-Cc-ceeEEEE--CCEEEEEccccCCCCcccceEEEEECCCCc-
Q 012701 264 ILSSAEMYNSE---TQ--TWKV-LPSMKN------P-RK-MCSGVFM--DGKFYVIGGIGGSDSKVLTCGEEYDLETET- 326 (458)
Q Consensus 264 ~~~~v~~yd~~---t~--~W~~-~~~~p~------~-r~-~~~~~~~--~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~- 326 (458)
....+.+||+. ++ .|.. ++.... + +. .+--+.+ +|.+||.+... ...|+++++....
T Consensus 98 g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~------~~~I~rV~pdG~~~ 171 (334)
T 2p9w_A 98 GASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG------MPAIARVSADGKTV 171 (334)
T ss_dssp SCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES------SCEEEEECTTSCCE
T ss_pred CCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC------CCeEEEEeCCCCEE
Confidence 14679999988 55 3543 111111 0 11 1222333 68999986543 1468999997553
Q ss_pred --eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCC
Q 012701 327 --WTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERR 381 (458)
Q Consensus 327 --W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~ 381 (458)
|-.-.+....+.+. ..++.. ++ .|++... .+.+++||+.+.
T Consensus 172 ~~~~~~~~~~~~~~G~-------------nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 172 STFAWESGNGGQRPGY-------------SGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp EEEEECCCCSSSCCSC-------------SEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred eeeeecCCCcccccCc-------------ceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 53322222223332 256666 34 5666665 889999998853
No 326
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=53.56 E-value=5.9 Score=21.65 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCccccccc
Q 012701 33 NGKRPLEIDGDDDCHHQR 50 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (458)
-.||++|=+++|+|+..+
T Consensus 7 prkrplewdedeepprkr 24 (28)
T 3ukw_C 7 PRKRPLEWDEDEEPPRKR 24 (28)
T ss_dssp CCCCCCCCCGGGSCCSSC
T ss_pred cccCCcccccccCcchhh
Confidence 478999887777776654
No 327
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=53.39 E-value=2e+02 Score=29.42 Aligned_cols=110 Identities=6% Similarity=-0.041 Sum_probs=61.4
Q ss_pred CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcC-CCCC-CCcceeEEE-ECCEEEEEccccCCCCcccceEEEEECCCC
Q 012701 249 GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLP-SMKN-PRKMCSGVF-MDGKFYVIGGIGGSDSKVLTCGEEYDLETE 325 (458)
Q Consensus 249 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~-~r~~~~~~~-~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~ 325 (458)
++...+.++.+ ..+.+||..+ .+..+. .++. .+..++.++ -+|++.+.||.+ ..+..||+.++
T Consensus 96 dG~~LAs~s~d------g~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D-------GtVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNN------GNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED-------GELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETT------SCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT-------SEEEEEECCCC
T ss_pred CCCEEEEEeCC------CcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 56666666655 3467777443 444433 2221 223444443 488888888876 36888999886
Q ss_pred ce-----EEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEECCEEEEEEcCCCeEEEEeCCCCc
Q 012701 326 TW-----TEIPNMSPARGGAARGTEMPASAEAPPLVAVVNNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 326 ~W-----~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.- -.+..+.....++ .. .-..++...+. ++.++.++.+..||..++.
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh-----~~----~V~sVawSPdg-Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGS-----KD----WVTHIVWYEDV-LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTC-----CC----CEEEEEEETTE-EEEEETTCCEEEECCCSSS
T ss_pred ccccccceeeeeeecccccc-----cc----cEEEEEEcCCc-EEEEeCCCeEEEEECCCCc
Confidence 31 1111111111111 00 00145556566 7777888999999998866
No 328
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=52.77 E-value=1.5e+02 Score=27.85 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCEEEEEEcCCCeEEEEeCCCC--ceEEeccCCCccCCCCcccEEEEEe-CC-EEEEEcCCCCCCCCeeeEEEeecCC
Q 012701 360 NNELYAADYADMEVRKYDKERR--LWFTIGRLPERANSMNGWGLAFRAC-GD-RLIVIGGPKASGEGFIELNSWVPSE 433 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~--~W~~v~~lp~~~~~~~~~~~a~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~~ 433 (458)
++.+++.| .++.|.+||..+. .+..+...|.....+...-.++... ++ .+++.|+.+. .+.+|+...
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~ 258 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG------TIRLCDMRA 258 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS------CEEEEETTT
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC------eEEEEECcC
Confidence 56667776 7889999999832 3333321111111111111222222 33 6777776542 466777654
No 329
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=51.16 E-value=1.3e+02 Score=26.42 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc--e-eeCCC--CCCCCcee-eEEE--eCCEEEEEeccCCCCCccCeEEEEe
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS--W-SSGMR--MNAPRCLF-GSAS--LGEIAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~--~p~~r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd 272 (458)
++++|+|-|. .+|+||..+.. + +.+.. +|..-... ++.. .++++|++-| +..++||
T Consensus 87 ~~k~yfFkG~--------~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ywr~d 150 (218)
T 1gen_A 87 EEKAVFFAGN--------EYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DKFWRYN 150 (218)
T ss_dssp TTEEEEEETT--------EEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TEEEEEE
T ss_pred CCEEEEEeCC--------EEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CEEEEEE
Confidence 6899999654 58999853210 0 11211 22111112 2222 2689999966 5688999
Q ss_pred CCCCcEEEc-----CC--CCCCCcceeEEEEC--CEEEEEccccCCCCcccceEEEEECCCCc
Q 012701 273 SETQTWKVL-----PS--MKNPRKMCSGVFMD--GKFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 273 ~~t~~W~~~-----~~--~p~~r~~~~~~~~~--g~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
..+++-... .. +..+..-.++...+ |++|++-|. ..++||..+..
T Consensus 151 ~~~~~v~~gyPr~i~~~w~g~p~~idaAf~~~~~g~~YfFkg~---------~y~~~~~~~~~ 204 (218)
T 1gen_A 151 EVKKKMDPGFPKLIADAWNAIPDNLDAVVDLQGGGHSYFFKGA---------YYLKLENQSLK 204 (218)
T ss_dssp TTTTEECSSCCEEHHHHSSSCCSSCSEEEECTTTCEEEEEETT---------EEEEEETTEEE
T ss_pred CccccccCCCCcchhhccCCCCCCCCEEEEEcCCCcEEEEECC---------EEEEEECCcee
Confidence 887642211 00 11122222333444 899999653 36777776543
No 330
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=48.40 E-value=2.4e+02 Score=28.86 Aligned_cols=17 Identities=6% Similarity=-0.066 Sum_probs=13.1
Q ss_pred CeEEEEeCCCCceEEec
Q 012701 371 MEVRKYDKERRLWFTIG 387 (458)
Q Consensus 371 ~~v~~yd~~~~~W~~v~ 387 (458)
..|+.+|..++..+.+.
T Consensus 337 ~~l~~~~~~~~~~~~lt 353 (719)
T 1z68_A 337 KHIHYIKDTVENAIQIT 353 (719)
T ss_dssp EEEEEESSCSTTCEECS
T ss_pred eEEEEEECCCCceEecc
Confidence 47999999888766664
No 331
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=47.26 E-value=1.3e+02 Score=27.06 Aligned_cols=77 Identities=9% Similarity=0.042 Sum_probs=45.1
Q ss_pred CCCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-
Q 012701 284 MKNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV- 359 (458)
Q Consensus 284 ~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~- 359 (458)
+|.-....++..+ ++.||++... -..++.+|+..+.+..++- ....... .++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~-------~~~I~~ld~~g~v~~~i~l-~g~~D~E--------------GIa~~~ 79 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINK-------PAAIVEMTTNGDLIRTIPL-DFVKDLE--------------TIEYIG 79 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEET-------TEEEEEEETTCCEEEEEEC-SSCSSEE--------------EEEECS
T ss_pred CCCcccCcceeEEeCCCCEEEEEECC-------CCeEEEEeCCCCEEEEEec-CCCCChH--------------HeEEeC
Confidence 3333344555544 4789998543 2468999999777777642 1111111 45554
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCc
Q 012701 360 NNELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
++.+++..-....+.+|+.....
T Consensus 80 ~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 80 DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TTEEEEEETTTTEEEEEEECTTC
T ss_pred CCEEEEEECCCCcEEEEEcCCCC
Confidence 45666665455788888776554
No 332
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=46.39 E-value=2e+02 Score=27.36 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCc--e-eeCCCCCCCC---ceeeEEEe--CCEEEEEeccCCCCCccCeEEEEe
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNS--W-SSGMRMNAPR---CLFGSASL--GEIAILAGGSDLEGNILSSAEMYN 272 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W-~~~~~~p~~r---~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd 272 (458)
++++|+|-|. .+|+|+..+-. + +.+..+..|. .--++... ++++|+|-| +..++||
T Consensus 236 ~g~~~fFkg~--------~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG--------~~yw~yd 299 (365)
T 3ba0_A 236 RNQVFLFKDD--------KYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD--------NQYWRYD 299 (365)
T ss_dssp GTEEEEEETT--------EEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET--------TEEEEEE
T ss_pred CCEEEEEeCC--------EEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC--------CEEEEEe
Confidence 7899999653 57887654221 1 2233321222 11223333 579999966 5689999
Q ss_pred CCCCcEEEcCC------C-CCCCcceeEEEE-CCEEEEEccccCCCCcccceEEEEECCCCceEE
Q 012701 273 SETQTWKVLPS------M-KNPRKMCSGVFM-DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTE 329 (458)
Q Consensus 273 ~~t~~W~~~~~------~-p~~r~~~~~~~~-~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~ 329 (458)
..+++-..--+ . ..+..--+++.. ++++|++-|. ..++||..+.+-..
T Consensus 300 ~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~---------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 300 ERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGS---------NQFEYDFLLQRITK 355 (365)
T ss_dssp TTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEETT---------EEEEEETTTTEEEE
T ss_pred CCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeCC---------EEEEEECCccEEec
Confidence 87664221100 0 112222334445 8999999653 47889988776544
No 333
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=46.31 E-value=2.6e+02 Score=28.62 Aligned_cols=137 Identities=12% Similarity=-0.008 Sum_probs=70.2
Q ss_pred ceEEEEEcCCCceeeCC-CCCCC-CceeeEEE-eCCEEEEEeccCCCCCccCeEEEEeCCCCc--------EEEcCC-CC
Q 012701 218 HVIYRYSILTNSWSSGM-RMNAP-RCLFGSAS-LGEIAILAGGSDLEGNILSSAEMYNSETQT--------WKVLPS-MK 285 (458)
Q Consensus 218 ~~v~~yd~~t~~W~~~~-~~p~~-r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~-~p 285 (458)
..+.+||..+ .+..+. .++.+ +..++.+. -++++.+.||.+ ..+.+||..++. ...+.. ..
T Consensus 107 g~V~iwd~~~-~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~D------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~ 179 (588)
T 2j04_A 107 GNVSVFKDNK-MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNED------GELQFFSIRKNSENTPEFYFESSIRLSDA 179 (588)
T ss_dssp SCEEEEETTE-EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETT------SEEEEEECCCCTTTCCCCEEEEEEECSCT
T ss_pred CcEEEEeCCc-eeeeccCCCccccccEEEEEEcCCCCEEEEEcCC------CEEEEEECCCCccccccceeeeeeecccc
Confidence 3466676433 343332 22222 23333332 367777777765 468899998873 122210 11
Q ss_pred C-CCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCc----eEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC
Q 012701 286 N-PRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETET----WTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN 360 (458)
Q Consensus 286 ~-~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~----W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (458)
. ...-.+.+...+. ++.++.+ +.+..||+.++. |..+..... ..-. .++..+
T Consensus 180 gh~~~V~sVawSPdg-Laass~D-------~tVrlWd~~~~~~~~~~~tL~~~h~-~~V~--------------svaFsg 236 (588)
T 2j04_A 180 GSKDWVTHIVWYEDV-LVAALSN-------NSVFSMTVSASSHQPVSRMIQNASR-RKIT--------------DLKIVD 236 (588)
T ss_dssp TCCCCEEEEEEETTE-EEEEETT-------CCEEEECCCSSSSCCCEEEEECCCS-SCCC--------------CEEEET
T ss_pred cccccEEEEEEcCCc-EEEEeCC-------CeEEEEECCCCccccceeeeccccc-CcEE--------------EEEEEC
Confidence 0 1122334445455 6666654 467888887765 333321111 1111 344444
Q ss_pred CEEEEEEcCCCeEEEEeCCCCceEEe
Q 012701 361 NELYAADYADMEVRKYDKERRLWFTI 386 (458)
Q Consensus 361 ~~lyv~gg~~~~v~~yd~~~~~W~~v 386 (458)
...+.++ .+.|..||..++.=...
T Consensus 237 -~~LASa~-~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 237 -YKVVLTC-PGYVHKIDLKNYSISSL 260 (588)
T ss_dssp -TEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred -CEEEEEe-CCeEEEEECCCCeEEEE
Confidence 4444444 48999999988776443
No 334
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=44.52 E-value=1.5e+02 Score=25.39 Aligned_cols=102 Identities=8% Similarity=-0.023 Sum_probs=54.7
Q ss_pred eCCEEEEEcCCCCCcCccceEEEEEcCCCce---eeCC----CCCCCCceeeEEE-eCCEEEEEeccCCCCCccCeEEEE
Q 012701 200 VGTELLVFGRELTAHHISHVIYRYSILTNSW---SSGM----RMNAPRCLFGSAS-LGEIAILAGGSDLEGNILSSAEMY 271 (458)
Q Consensus 200 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W---~~~~----~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~y 271 (458)
.++++|+|-|. .+|+|+..+... +.+. .+|......+... .++++|++-| +..++|
T Consensus 60 ~~g~~yfFkg~--------~yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG--------~~yw~y 123 (196)
T 3c7x_A 60 KDGKFVFFKGD--------KHWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG--------NKYYRF 123 (196)
T ss_dssp TTSCEEEEETT--------EEEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET--------TEEEEE
T ss_pred CCCcEEEecCC--------EEEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC--------CEEEEE
Confidence 36789999653 578888543211 1221 2332222222221 2689999966 467899
Q ss_pred eCCCCcEEE-----cCCC-CCCCcceeEEEE-CC-EEEEEccccCCCCcccceEEEEECCCCc
Q 012701 272 NSETQTWKV-----LPSM-KNPRKMCSGVFM-DG-KFYVIGGIGGSDSKVLTCGEEYDLETET 326 (458)
Q Consensus 272 d~~t~~W~~-----~~~~-p~~r~~~~~~~~-~g-~lyv~GG~~~~~~~~~~~v~~yd~~~~~ 326 (458)
|..+++-.. +... ..+..--++... ++ ++|++-|. ..++||..+.+
T Consensus 124 d~~~~~v~~gyPk~i~~~~gip~~idaAf~~~~~~~~YfFkg~---------~y~r~d~~~~~ 177 (196)
T 3c7x_A 124 NEELRAVDSEYPKNIKVWEGIPESPRGSFMGSDEVFTYFYKGN---------KYWKFNNQKLK 177 (196)
T ss_dssp ETTTTEECTTCSEEGGGSBTCCSSCSEEEECTTSSEEEEEETT---------EEEEEETTTTE
T ss_pred eCCcccccCCCCccHHHCCCcCCCcceeEEecCCCEEEEEECC---------EEEEEECCcce
Confidence 987754221 1111 111222223333 44 99999653 46889987764
No 335
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=44.26 E-value=1.6e+02 Score=30.42 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=73.1
Q ss_pred eEEEeCCEEEEEcCCCCCcCccceEEEEEcCC----------CceeeCCCCCCCCceeeEEE-eCCEEEEEeccCCCCCc
Q 012701 196 ESLAVGTELLVFGRELTAHHISHVIYRYSILT----------NSWSSGMRMNAPRCLFGSAS-LGEIAILAGGSDLEGNI 264 (458)
Q Consensus 196 ~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----------~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~ 264 (458)
++....+++|+|-|. .+|+++... ..|.. +|.. ...+... .++++|+|-|
T Consensus 448 Ait~~rg~~yfFKg~--------~yWr~~~~~~~~~~P~~Is~~wp~---LP~~-IDAA~~~~~~~k~yFFkG------- 508 (631)
T 1ck7_A 448 GIAQIRGEIFFFKDR--------FIWRTVTPRDKPMGPLLVATFWPE---LPEK-IDAVYEAPQEEKAVFFAG------- 508 (631)
T ss_dssp EEEECSSSEEEECSS--------EEEEESCTTSCCEEEEEGGGTCTT---SCSS-CSBCCEETTTTEEEEEET-------
T ss_pred eeEecCCcEEEEcCC--------EEEEEcCCCCCCCCceeccccCCC---CCcc-ceEEEEECCCCEEEEEec-------
Confidence 456678999999654 456665433 22332 3321 1111111 2578999966
Q ss_pred cCeEEEEeCCCC--cE-EEcCC--CCCCCcceeEEE---ECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCC
Q 012701 265 LSSAEMYNSETQ--TW-KVLPS--MKNPRKMCSGVF---MDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPA 336 (458)
Q Consensus 265 ~~~v~~yd~~t~--~W-~~~~~--~p~~r~~~~~~~---~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~ 336 (458)
+..|+|+..+- -+ +.+.. +|.....--+|+ .++++|++-|. ..++||..+++= .+.-|..
T Consensus 509 -~~yWry~~~~l~~GYPk~Is~~G~P~~~~~IDAAf~~~~~gktYFFkG~---------~ywryd~~~~~v--d~gYPk~ 576 (631)
T 1ck7_A 509 -NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKM--DPGFPKL 576 (631)
T ss_dssp -TEEEEEETTEECTTCCEEGGGGTCCTTCCCCCBCCCCTTTCEEEEEETT---------EEEEEETTTTEE--CTTCCEE
T ss_pred -CEEEEECCCccccCCCccchhcCCCCCCCcceeEEEecCCCeEEEEECC---------EEEEEcCCcccc--cCCCCcc
Confidence 45788875310 00 11111 121111122333 36899999663 478999876531 1111211
Q ss_pred CCCCCCCCCCCCCcCCCCEEEEEC--CEEEEEEcCCCeEEEEeCCCCc
Q 012701 337 RGGAARGTEMPASAEAPPLVAVVN--NELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 337 r~~~~~~~~~~~~~~~~~~~~~~~--~~lyv~gg~~~~v~~yd~~~~~ 382 (458)
....-+|.... ..++...+ +++|++-| +..|+||..+..
T Consensus 577 i~~~w~G~p~~-----iDAAf~~~~~g~~YFFkG--~~Ywr~d~~~~~ 617 (631)
T 1ck7_A 577 IADAWNAIPDN-----LDAVVDLQGGGHSYFFKG--AYYLKLENQSLK 617 (631)
T ss_dssp TTTSCSSCCTT-----CCEEECCTTSCBCEEEET--TEEECCBTTBTT
T ss_pred hHhhcCCCCCC-----CcEeEEEcCCCeEEEEEC--CEEEEEeCccce
Confidence 11000111000 01333333 78999854 678899876544
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=43.55 E-value=1.2e+02 Score=28.59 Aligned_cols=115 Identities=12% Similarity=0.011 Sum_probs=58.6
Q ss_pred eeEEEEEeccceEEEEecCCC--cEEeCCCCCCCccccccCceEEEeCCEEEEEcCCCCCcCccceEEEEEcCCCceeeC
Q 012701 156 EHWVYFSCHLLEWEAFDPIRR--RWMHLPRMTSNECFMCSDKESLAVGTELLVFGRELTAHHISHVIYRYSILTNSWSSG 233 (458)
Q Consensus 156 ~~~l~~~~~~~~~~~yDp~~~--~W~~l~~~p~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 233 (458)
+..+|+......++++|..++ .|..-.....+.... .. .....++.+|++... ....++.||..++.|+.-
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~-~~-~~~~~~~~~~vv~p~-----~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEI-QE-PSRLETYETLIIEPF-----GDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEEC-CC-SCTTTSSEEEEECCS-----TTTEEEEEETTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEe-cC-CccccCCcEEEEEEC-----CCCEEEEEECCCCcEEee
Confidence 345667666778899998887 687533210111000 00 001135567766422 345688899888766432
Q ss_pred CCCC-----CCCceeeEEEe-------CCEEEEEeccCCCCCccCeEEEEeCCCCc--EEEcCC
Q 012701 234 MRMN-----APRCLFGSASL-------GEIAILAGGSDLEGNILSSAEMYNSETQT--WKVLPS 283 (458)
Q Consensus 234 ~~~p-----~~r~~~~~~~~-------~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~ 283 (458)
-.++ .|-...+.-++ .+...++|+.+ ..++.+|..+++ |+.-..
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~------g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR------TIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEEEEECEEE------EEEEEEETTTCCEEEEESTT
T ss_pred eccccceeccccccCCCceeecccccccCCEEEEEecC------CEEEEEECCCCcEEEEEecC
Confidence 1111 11111111112 34444455533 568889999886 776443
No 337
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=42.65 E-value=3.2e+02 Score=28.62 Aligned_cols=150 Identities=13% Similarity=0.017 Sum_probs=80.3
Q ss_pred ccceEEEEEcCC--CceeeCCCCCCCCceeeEEEeCCEEEEEeccCC----CCCccCeEEEEeCCC--------CcEEE-
Q 012701 216 ISHVIYRYSILT--NSWSSGMRMNAPRCLFGSASLGEIAILAGGSDL----EGNILSSAEMYNSET--------QTWKV- 280 (458)
Q Consensus 216 ~~~~v~~yd~~t--~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~----~~~~~~~v~~yd~~t--------~~W~~- 280 (458)
..+.+|..|... ..|.++ ..|+...-....++.+|+....+- ..-....+..+|..+ ..|+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (711)
T 4hvt_A 267 YNYDNYILDTKYKNLKLQKI---NMPSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKIL 343 (711)
T ss_dssp SCEEEEEEECSSSSCEEEEC---CSCTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEE
T ss_pred CceeEEEEcCCCCCCcceEe---ecCCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEE
Confidence 346677777653 567776 233322224566889999764431 011245688888764 46886
Q ss_pred cCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEc--CCCCCCCCCCCCCCCCCCCcCCCCEEEE
Q 012701 281 LPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEI--PNMSPARGGAARGTEMPASAEAPPLVAV 358 (458)
Q Consensus 281 ~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i--~~~p~~r~~~~~~~~~~~~~~~~~~~~~ 358 (458)
+++-. .+.-......++.|++..-.+ ....+.++|+.++.|... ..+|.. +. .....
T Consensus 344 ~~~~~-~~~l~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~~g~~~~~~~i~lp~~--~~-------------~~~~~ 402 (711)
T 4hvt_A 344 FTPTA-NEVFNFISTTKDRVFLATYDN-----VVAKVVTFTLENEQWTKPVVLKLPYQ--NA-------------IFGMS 402 (711)
T ss_dssp ECCCT-TEEEEEEEECSSCEEEEEEET-----TEEEEEEECEETTEECCCEEECCCST--TC-------------EEEEE
T ss_pred ECCCC-CCeEEEEEEECCEEEEEEEEC-----CEEEEEEEECCCCceEEEeccCCCCC--eE-------------EEEEe
Confidence 43322 222223345567777664332 234688899888877432 123321 11 01111
Q ss_pred E---CCEEEEE-EcC--CCeEEEEeCCCCceEEeccCC
Q 012701 359 V---NNELYAA-DYA--DMEVRKYDKERRLWFTIGRLP 390 (458)
Q Consensus 359 ~---~~~lyv~-gg~--~~~v~~yd~~~~~W~~v~~lp 390 (458)
. ++.+++. .+. ...++.||.. ++++.+...+
T Consensus 403 ~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~~l~~~~ 439 (711)
T 4hvt_A 403 SYEEEEEALITIENSIVPPTIYLWVKT-HELKIIRKAL 439 (711)
T ss_dssp CCTTCSCEEEEEECSSSCCEEEEECTT-SCEEEEECCS
T ss_pred ecCcCCEEEEEEecCCCCCEEEEEeCC-CcEEEEecCC
Confidence 1 2344443 332 2689999987 7777775443
No 338
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=39.26 E-value=2.2e+02 Score=27.01 Aligned_cols=144 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred ccceEEEEEcCC--CceeeCCCCC-----CCCceeeEEEeC---C--EEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC
Q 012701 216 ISHVIYRYSILT--NSWSSGMRMN-----APRCLFGSASLG---E--IAILAGGSDLEGNILSSAEMYNSETQTWKVLPS 283 (458)
Q Consensus 216 ~~~~v~~yd~~t--~~W~~~~~~p-----~~r~~~~~~~~~---~--~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 283 (458)
....+++||+.+ .+-+++.-.. ..-.-|+..... + +|||+--... ...-.++.+|+.++..+.+..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~--~s~ielf~~d~~~~~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGS--SSTVEVFKFQEEEKSLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTT--CCEEEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCC--CCeEEEEEEECCCCEEEEEec
Confidence 345689999873 3444442211 112335555432 3 6888844321 112345556776666554432
Q ss_pred ---CCCCCcceeEEEECCEEEEEccccCCC----------CcccceEEEEECCCCceEEcC-CCCCCCCCCCCCCCCCCC
Q 012701 284 ---MKNPRKMCSGVFMDGKFYVIGGIGGSD----------SKVLTCGEEYDLETETWTEIP-NMSPARGGAARGTEMPAS 349 (458)
Q Consensus 284 ---~p~~r~~~~~~~~~g~lyv~GG~~~~~----------~~~~~~v~~yd~~~~~W~~i~-~~p~~r~~~~~~~~~~~~ 349 (458)
.+..+.+-..+.-+|.+|+-+..--.+ ......+++||+. +.+.+. .+..+
T Consensus 159 ~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~p------------- 223 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFA------------- 223 (355)
T ss_dssp ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSE-------------
T ss_pred cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCccc-------------
Confidence 233344445556689999864311000 1123568889884 333332 12111
Q ss_pred cCCCCEEEEE-C-CEEEEEEcCCCeEEEEeCCC
Q 012701 350 AEAPPLVAVV-N-NELYAADYADMEVRKYDKER 380 (458)
Q Consensus 350 ~~~~~~~~~~-~-~~lyv~gg~~~~v~~yd~~~ 380 (458)
..++.. + ..||+.......|++|+...
T Consensus 224 ----NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 224 ----NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ----EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ----CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 145554 3 47999988788999999864
No 339
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=39.08 E-value=2.4e+02 Score=31.61 Aligned_cols=111 Identities=9% Similarity=-0.031 Sum_probs=62.3
Q ss_pred ccceEEEEEcCCCceeeCCCCCCCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCCCCCCCcce-eEE
Q 012701 216 ISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPSMKNPRKMC-SGV 294 (458)
Q Consensus 216 ~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~ 294 (458)
....+++|+...++.+.+...+..-.-.+.+.++++|.+.-| ..+.+|+...++--....-..+.... ...
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig--------~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~ 933 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASIN--------STVRLYEWTTEKELRTECNHYNNIMALYLK 933 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEET--------TEEEEEEECTTSCEEEEEEECCCSCEEEEE
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcC--------CEEEEEECCCCceEEEEeeccccEEEEEEe
Confidence 456789999886677666554444444566677887766644 46788887765421100000000011 122
Q ss_pred EECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCC
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGA 340 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~ 340 (458)
..++.|+| |-.. ..-.+..|+...++-..++.-..++...
T Consensus 934 ~~~~~I~v-gD~~-----~Sv~~~~y~~~~~~L~~~a~D~~~~~vt 973 (1158)
T 3ei3_A 934 TKGDFILV-GDLM-----RSVLLLAYKPMEGNFEEIARDFNPNWMS 973 (1158)
T ss_dssp EETTEEEE-EESS-----BCEEEEEEETTTTEEEEEEECCSCBCEE
T ss_pred ccCCEEEE-EEhh-----heEEEEEEEcCCCeEEEEEeecccccEE
Confidence 45666554 3221 2235677999999888887555555433
No 340
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=38.02 E-value=2.8e+02 Score=26.60 Aligned_cols=201 Identities=12% Similarity=0.100 Sum_probs=97.6
Q ss_pred CCEEEEEc-CCCC-----Cc---CccceEEEEEcCCC--ceeeC---C-CCCCCCceeeEEE-e---------CCEEEEE
Q 012701 201 GTELLVFG-RELT-----AH---HISHVIYRYSILTN--SWSSG---M-RMNAPRCLFGSAS-L---------GEIAILA 255 (458)
Q Consensus 201 ~~~lyv~G-G~~~-----~~---~~~~~v~~yd~~t~--~W~~~---~-~~p~~r~~~~~~~-~---------~~~lyv~ 255 (458)
.+.|+|+- |... .. .....+.+||+.|+ +-.+. + +.-.+.+.+.-.. . ++.+|+.
T Consensus 97 ~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYIt 176 (381)
T 3q6k_A 97 CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYIT 176 (381)
T ss_dssp TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEE
T ss_pred CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEE
Confidence 57899883 3321 11 24557999999999 65332 2 2222333333333 2 3467877
Q ss_pred eccCCCCCccCeEEEEeCCCCc-EEEcCCCCCCCcceeEEEECCEEEEEc-cccC----CCCcccceEEEEECCCC-ceE
Q 012701 256 GGSDLEGNILSSAEMYNSETQT-WKVLPSMKNPRKMCSGVFMDGKFYVIG-GIGG----SDSKVLTCGEEYDLETE-TWT 328 (458)
Q Consensus 256 GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~g~lyv~G-G~~~----~~~~~~~~v~~yd~~~~-~W~ 328 (458)
-- ....+.+||..+++ |+.+.....+- ......++|+-+-+. |..+ .....-.....|.+-+. ..-
T Consensus 177 D~------~~~gLIVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 177 NF------LRGALFIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp ET------TTTEEEEEETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred cC------CCCcEEEEECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 32 13689999999885 88774322221 222334566544322 2210 00001122344544433 333
Q ss_pred EcCC--CCCCC-CCCCCCCCCCCCcCCCCE-EEEE---CCEEEEEEcCCCeEEEEeCCC-----CceEEeccCCCccCCC
Q 012701 329 EIPN--MSPAR-GGAARGTEMPASAEAPPL-VAVV---NNELYAADYADMEVRKYDKER-----RLWFTIGRLPERANSM 396 (458)
Q Consensus 329 ~i~~--~p~~r-~~~~~~~~~~~~~~~~~~-~~~~---~~~lyv~gg~~~~v~~yd~~~-----~~W~~v~~lp~~~~~~ 396 (458)
.++. +.... ...+. ..-.......+ ...+ +|.||+..-..+.|.++|+.+ +....+..=+ ...
T Consensus 250 ~V~T~~L~~~~~~~~v~--~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-~l~-- 324 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPE--LLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-RFV-- 324 (381)
T ss_dssp EEEHHHHSSTTCCCCCE--EEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-TCC--
T ss_pred EEEHHHhhCcchhhceE--EeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-Ccc--
Confidence 3331 10000 00000 00000000012 2333 478888877789999999987 3456665444 221
Q ss_pred CcccEEEEE-eCCEEEEEcC
Q 012701 397 NGWGLAFRA-CGDRLIVIGG 415 (458)
Q Consensus 397 ~~~~~a~~~-~~~~lyv~GG 415 (458)
|...+.+ .++.||++-.
T Consensus 325 --~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 325 --FGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp --SEEEEEECTTSCEEEEEC
T ss_pred --ccCeEEECCCCeEEEEEC
Confidence 3444444 3678988864
No 341
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=36.87 E-value=2.4e+02 Score=31.34 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=52.8
Q ss_pred CEEEEEEc----CCCeEEEEeCCCCceEEeccCCCccCCCCcccEEEEEeC------CEEEEEcCCCCCC-CCeeeEEEe
Q 012701 361 NELYAADY----ADMEVRKYDKERRLWFTIGRLPERANSMNGWGLAFRACG------DRLIVIGGPKASG-EGFIELNSW 429 (458)
Q Consensus 361 ~~lyv~gg----~~~~v~~yd~~~~~W~~v~~lp~~~~~~~~~~~a~~~~~------~~lyv~GG~~~~~-~~~~~~~~~ 429 (458)
...+++|. ..+.+++|......|.....+..... ...+|.++++.+ .-|+++|.+.... .....+.+|
T Consensus 398 ~~~~v~GAP~~~~~G~V~i~~~~~~~~~~~~~~~g~~~-gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy 476 (1095)
T 3k6s_A 398 VQSLVLGAPRYQHTGKAVIFTQVSRQWRMKAEVTGTQI-GSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVC 476 (1095)
T ss_dssp SCEEEEEETTGGGTCEEEEEECCTTTCCEEEEECCSST-TSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEE
T ss_pred ceEEEEEcccccccceEEEEEecCCcceEEeecccCcc-cCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEE
Confidence 34567773 34789999988888988764432211 122455555532 3567888654311 222345555
Q ss_pred ecCCCCCCceEeecc------CCCceeeeEEEee
Q 012701 430 VPSEGPPQWNLLARK------QSANFVYNCAVMG 457 (458)
Q Consensus 430 ~~~~~~~~W~~l~~~------p~~~~~~~~~v~g 457 (458)
.-..+...|.....+ +.++|.++.+++|
T Consensus 477 ~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~g 510 (1095)
T 3k6s_A 477 PLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLG 510 (1095)
T ss_dssp ECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEE
T ss_pred EeCCCCcceeeeEEeecccCCccccCccceEeec
Confidence 544443567643222 3467777776643
No 342
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=35.61 E-value=5.1e+02 Score=28.91 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=62.4
Q ss_pred cCeEEEEeCCCCcEEEcCCCCCCCcceeEEEECCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCC
Q 012701 265 LSSAEMYNSETQTWKVLPSMKNPRKMCSGVFMDGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGT 344 (458)
Q Consensus 265 ~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~ 344 (458)
...+.+|+...++.+.+...+..-.-.+.+.++|+|.+.-| +.+.+|+...++.-.... .....
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig---------~~l~vy~l~~~~~L~~~~---~~~~~---- 926 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASIN---------STVRLYEWTTEKELRTEC---NHYNN---- 926 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEET---------TEEEEEEECTTSCEEEEE---EECCC----
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcC---------CEEEEEECCCCceEEEEe---ecccc----
Confidence 46688888876677766554443344556678897665433 357888887665322110 00100
Q ss_pred CCCCCcCCCCEEEEECCEEEEEEcCCC-eEEEEeCCCCceEEeccCCCcc
Q 012701 345 EMPASAEAPPLVAVVNNELYAADYADM-EVRKYDKERRLWFTIGRLPERA 393 (458)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~lyv~gg~~~-~v~~yd~~~~~W~~v~~lp~~~ 393 (458)
-....+.+.++.|++-+-..+ .+..|+...++-..++.=..++
T Consensus 927 ------i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~ 970 (1158)
T 3ei3_A 927 ------IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPN 970 (1158)
T ss_dssp ------SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCB
T ss_pred ------EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccc
Confidence 000024456888777664433 5677999888888887544444
No 343
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis}
Probab=34.88 E-value=3e+02 Score=27.61 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=68.0
Q ss_pred EECCEEEEEccccCCCCcccceEEEEEC-CCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CCEEEEEEc--CC
Q 012701 295 FMDGKFYVIGGIGGSDSKVLTCGEEYDL-ETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NNELYAADY--AD 370 (458)
Q Consensus 295 ~~~g~lyv~GG~~~~~~~~~~~v~~yd~-~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~gg--~~ 370 (458)
.-+|+|++-.-....... ......|.. .-.+|+....++...... .++.. +|+|++.-- ..
T Consensus 333 l~dGrLv~P~~~~~~~g~-~~s~i~~S~D~G~TW~~~~~~~~~~~e~--------------~vve~~dG~L~~~~R~~~~ 397 (523)
T 4fj6_A 333 MQDGTLVFPIQFIDATRV-PNAGIMYSKDRGKTWHLHNLARTNTTEA--------------QVAEVEPGVLMLNMRDNRG 397 (523)
T ss_dssp CTTSCEEEEEEEECTTSC-EEEEEEEESSTTSSCEECCCSEETEEEE--------------EEEEEETTEEEEEEEETTC
T ss_pred EeCCeEEEEEEEEcCCCC-EEEEEEEECCCCCeEEECCCCCccccCC--------------EEEEecCCEEEEEEEecCC
Confidence 336776544322211111 223344444 357899876554322222 45554 789998521 11
Q ss_pred C--eEEEEeCCCCceEEec----cCCCccCCCCcccEEEEEe------CCEEEEEcCCCCCCCCeeeEEEeecCCCCCCc
Q 012701 371 M--EVRKYDKERRLWFTIG----RLPERANSMNGWGLAFRAC------GDRLIVIGGPKASGEGFIELNSWVPSEGPPQW 438 (458)
Q Consensus 371 ~--~v~~yd~~~~~W~~v~----~lp~~~~~~~~~~~a~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~W 438 (458)
+ .+..-.-...+|+... .||.+.. .+..+... +..++++....... ....+.+|.-..+..+|
T Consensus 398 g~r~v~~S~D~G~TWt~~~~~~~~L~~P~c----~~Sii~~~~~~~~~g~~~lL~snp~~~~-~R~~l~v~~S~D~G~TW 472 (523)
T 4fj6_A 398 GSRAVATTKDLGKTWTEHPSSRSALQESVC----MASLIKVNAKDNITGKDLLLFSNPNTTK-GRNHITIKASLDGGLTW 472 (523)
T ss_dssp SBCEEEEESSTTSSCEECTTTTTSSBCSSC----CCEEEEECGGGSTTCSCEEEEEEECCSS-SSCCEEEEEESSTTSCC
T ss_pred CcEEEEEECCCCCccCcCcCccccCCCCCc----ccEEEEEecccCCCCCcEEEEEccCCCC-ccccceEEEeCCCCCCC
Confidence 2 2333333457899864 4554432 12222221 23566666554322 22334455544456799
Q ss_pred eEeecc---CCCceeeeEEEe
Q 012701 439 NLLARK---QSANFVYNCAVM 456 (458)
Q Consensus 439 ~~l~~~---p~~~~~~~~~v~ 456 (458)
.....+ ..+.+.|+|.+.
T Consensus 473 ~~~~~v~~~~~~~~~Ys~l~~ 493 (523)
T 4fj6_A 473 PTEHQVLLDEAEGWGYSCLSM 493 (523)
T ss_dssp CGGGEEEEECSCCCCCEEEEE
T ss_pred ccCceEEEcCCCCcccceEEE
Confidence 764321 234577777653
No 344
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=34.83 E-value=4.1e+02 Score=27.68 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=75.9
Q ss_pred cceEEEEecCCC--cE--EeCCCCCCCccccccCceEE-EeCCEEEEEcCCCCCcCccceEEEEEcCC-Cceee-CCCCC
Q 012701 165 LLEWEAFDPIRR--RW--MHLPRMTSNECFMCSDKESL-AVGTELLVFGRELTAHHISHVIYRYSILT-NSWSS-GMRMN 237 (458)
Q Consensus 165 ~~~~~~yDp~~~--~W--~~l~~~p~~~~~~~~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t-~~W~~-~~~~p 237 (458)
..+++.+|..+. .+ ..+.+-.... ..... ..++.||+..... ......++++|..+ ..|+. +-+-.
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~-----~~s~~~~~g~~l~~~t~~~--~a~~~~L~~~d~~~~~~~~~~li~~~ 366 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPREKGV-----RYDVQMHGTSHLVILTNEG--GAVNHKLLIAPRGQPSDWSHVLVDHS 366 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCCTTC-----CEEEEEETTTEEEEEECTT--TCTTCEEEEEETTSTTCCCCEEECCC
T ss_pred CceEEEEECCCCCCCceeEEeecCCCCc-----eEEEeeeeCCEEEEEeCCC--CCCCcEEEEEcCCCcccceeeEECCC
Confidence 356777887764 35 4443211111 01111 2377888886432 01234789999876 67876 32211
Q ss_pred CCCceeeEEEeCCEEEEEeccCCCCCccCeEEEEeC-------CCCc-EEEcCCCCCCCcceeEEE-------EC-CEEE
Q 012701 238 APRCLFGSASLGEIAILAGGSDLEGNILSSAEMYNS-------ETQT-WKVLPSMKNPRKMCSGVF-------MD-GKFY 301 (458)
Q Consensus 238 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~-------~t~~-W~~~~~~p~~r~~~~~~~-------~~-g~ly 301 (458)
...........++.|++..-.++ ...++++|+ .++. -+.++ ++.. .+...+ .+ +.|+
T Consensus 367 ~~~~l~~~~~~~~~lv~~~~~~g----~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~--~~~~~~~~~~~~~~~~~~l~ 439 (751)
T 2xe4_A 367 EDVFMESIAVRSNYLVVAGRRAG----LTRIWTMMADSQDGVFKAGTGLREVV-MEEP--IFTVHLVESQMLEYEEPTFR 439 (751)
T ss_dssp SSEEEEEEEECSSEEEEEEEETT----EEEEEEEECCTTTSCCCTTTCCEECC-CCCS--SCEEEECGGGCCCTTCSCEE
T ss_pred CCcEEEEEEEECCEEEEEEEeCC----EEEEEEEecccccccccCCccceEEC-CCCc--eeEEEeccCcccCCCCCEEE
Confidence 11122233445778877765443 367888996 4444 44442 2222 221111 12 3343
Q ss_pred EEccccCCCCcccceEEEEECCCCceEEcC
Q 012701 302 VIGGIGGSDSKVLTCGEEYDLETETWTEIP 331 (458)
Q Consensus 302 v~GG~~~~~~~~~~~v~~yd~~~~~W~~i~ 331 (458)
+.... ...-..++.||+.+++.+.+.
T Consensus 440 ~~~ss----~~~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 440 MEYSS----LATPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp EEEEE----TTEEEEEEEECTTTCCEEEEE
T ss_pred EEEeC----CCCCCEEEEEECCCCcEEEEe
Confidence 33211 123456889999888876664
No 345
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=31.98 E-value=1.7e+02 Score=27.57 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=55.9
Q ss_pred EEEEEeccCCCCCccCeEEEEeCCCCcE---EEcCCCCCCCccee-EEE---------ECCEEEEEccccCCCCcccceE
Q 012701 251 IAILAGGSDLEGNILSSAEMYNSETQTW---KVLPSMKNPRKMCS-GVF---------MDGKFYVIGGIGGSDSKVLTCG 317 (458)
Q Consensus 251 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W---~~~~~~p~~r~~~~-~~~---------~~g~lyv~GG~~~~~~~~~~~v 317 (458)
.+.+.|+.+ ..+.++|..++.= ..+..+......-. +++ .++++++.||.+ .++
T Consensus 102 ~~las~~~d------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D-------~tv 168 (393)
T 4gq1_A 102 LFLACVCQD------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD-------CTL 168 (393)
T ss_dssp EEEEEEETT------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT-------SEE
T ss_pred CEEEEEeCC------CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC-------CeE
Confidence 445555544 4577777776643 23333332222222 222 268888888876 467
Q ss_pred EEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEE-CC-EEEEEEcCCCeEEEEeCCCCc
Q 012701 318 EEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVV-NN-ELYAADYADMEVRKYDKERRL 382 (458)
Q Consensus 318 ~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~-~~-~lyv~gg~~~~v~~yd~~~~~ 382 (458)
.++|+.+..=... ......... +++.. ++ .+++.|+.++.|.+||..+.+
T Consensus 169 ~~Wd~~~~~~~~~-~~~~~~~v~--------------~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~ 220 (393)
T 4gq1_A 169 IIWRLTDEGPILA-GYPLSSPGI--------------SVQFRPSNPNQLIVGERNGNIRIFDWTLNL 220 (393)
T ss_dssp EEEEEETTEEEEE-EEECSSCEE--------------EEEEETTEEEEEEEEETTSEEEEEETTCCC
T ss_pred EEEECCCCceeee-ecCCCCCcE--------------EEEECCCCCceEEecCCCCEEEEEECCCCc
Confidence 7888765431110 001111111 33433 44 467778888999999998764
No 346
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=30.74 E-value=4.9e+02 Score=27.27 Aligned_cols=208 Identities=12% Similarity=0.089 Sum_probs=99.6
Q ss_pred eEEEEEcCCCceeeCCC-C-----CC---CCceeeEEEe----CCEEEEEeccCCCCCccCeEEEEeCCCCcEEEcCC-C
Q 012701 219 VIYRYSILTNSWSSGMR-M-----NA---PRCLFGSASL----GEIAILAGGSDLEGNILSSAEMYNSETQTWKVLPS-M 284 (458)
Q Consensus 219 ~v~~yd~~t~~W~~~~~-~-----p~---~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~-~ 284 (458)
.|++-+-.-.+|+.+.. + +. .........+ .+.+|+..|.-........+++=+=.-.+|+.+.. .
T Consensus 44 gv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~ 123 (763)
T 3a0f_A 44 GTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPV 123 (763)
T ss_dssp CEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSS
T ss_pred cEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCc
Confidence 47777767789998865 3 21 1122222333 36888876531111111223322223357998752 1
Q ss_pred C-----CCCcc-eeEEEE---CCEEEEEccccCCCCcccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCE
Q 012701 285 K-----NPRKM-CSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPL 355 (458)
Q Consensus 285 p-----~~r~~-~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~ 355 (458)
+ ..|.. ...++. .+.+|+.+.. ..+++=+-.-.+|+.+..++...... ....
T Consensus 124 ~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~--------~~l~~S~DgG~TW~~~~~~~~~~~~~-----------~~~~ 184 (763)
T 3a0f_A 124 PMGANDMGRNGGERLAVNPHWTDELWFGSRT--------QGLWRSTDRAQTWSRMNQLPDSSTYG-----------IGII 184 (763)
T ss_dssp CCCTTSTTTTSBCCEEECTTSTTCEEEECSS--------SCEEEESSTTSSCEECTTSCCCSCTT-----------TCEE
T ss_pred ccCccccCccccceEEECCCCCCEEEEEeCC--------CcEEEECCCCcCccccccCcccCCCc-----------cceE
Confidence 1 12221 233433 3678876421 12333333356899988665432110 0001
Q ss_pred EEEE----CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCcc---------------CCCCcccEEEEE-eCCEEEEEcC
Q 012701 356 VAVV----NNELYAADYADMEVRKYDKERRLWFTIGRLPERA---------------NSMNGWGLAFRA-CGDRLIVIGG 415 (458)
Q Consensus 356 ~~~~----~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~---------------~~~~~~~~a~~~-~~~~lyv~GG 415 (458)
.+.+ .+.||+.......+++=+-...+|+.+..+|... .......+.++. -++.||+...
T Consensus 185 ~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~l~~~~~ 264 (763)
T 3a0f_A 185 SVIFDPKNVGTAYVASHAVGGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGKNGRLYITYS 264 (763)
T ss_dssp EEEECSSSTTCEEEEESSTTCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCCEEEEEEeCCCeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECCCCcEEEEec
Confidence 2222 2468877543224555555567899997655311 000001122222 2678888742
Q ss_pred C-CCCCCCeeeEEEeecCCCCCCceEeeccCC
Q 012701 416 P-KASGEGFIELNSWVPSEGPPQWNLLARKQS 446 (458)
Q Consensus 416 ~-~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~ 446 (458)
. ...... ..-.+|..+....+|+.+...|.
T Consensus 265 ~~~~~~~~-~~g~v~rS~D~G~tW~~~~~~~~ 295 (763)
T 3a0f_A 265 DAPGPWGV-LYGEVWSYDPTNGNWKHITPSRE 295 (763)
T ss_dssp SSCSSSCC-CCEEEEEEETTTTEEEECCTTSS
T ss_pred cCCCCCCC-cceeEEEEeCCCCceEECCCCCC
Confidence 1 111001 12345666667789999876654
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=30.61 E-value=54 Score=31.10 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=19.0
Q ss_pred CCEEEEEE-cCCCeEEEEeCCCCceEE
Q 012701 360 NNELYAAD-YADMEVRKYDKERRLWFT 385 (458)
Q Consensus 360 ~~~lyv~g-g~~~~v~~yd~~~~~W~~ 385 (458)
++.+|++. ..++.++.||..++.|+.
T Consensus 55 ~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 55 TYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp SSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 56777775 467889999988776653
No 348
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=29.22 E-value=5.5e+02 Score=27.42 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCeEEEEeCCCCceEE
Q 012701 360 NNELYAADYADMEVRKYDKERRLWFT 385 (458)
Q Consensus 360 ~~~lyv~gg~~~~v~~yd~~~~~W~~ 385 (458)
++.+++.|+.++.|.+||..+++-..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEE
Confidence 67788888889999999998876543
No 349
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=27.00 E-value=3.7e+02 Score=24.63 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=42.4
Q ss_pred CC-EEEEEEcCCC-----eEEEEeCC-CCceEEecc-CCCccCCCCcccEEEEE---eCCEEEEEcCCCCCCCCeeeEEE
Q 012701 360 NN-ELYAADYADM-----EVRKYDKE-RRLWFTIGR-LPERANSMNGWGLAFRA---CGDRLIVIGGPKASGEGFIELNS 428 (458)
Q Consensus 360 ~~-~lyv~gg~~~-----~v~~yd~~-~~~W~~v~~-lp~~~~~~~~~~~a~~~---~~~~lyv~GG~~~~~~~~~~~~~ 428 (458)
++ .||+.....+ .|.+|++. +++...+.. .+.... ...+.++.. -++.||+.+.. ...+.+
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~--~~~~~a~sp~~~dg~~l~v~~~~------~~~v~v 336 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS--GGHSNAVSPCPWSDEWMAITDDQ------EGWLEI 336 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC--CTTCCCEEECTTCTTEEEEECSS------SCEEEE
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC--CcccceecCCCcCCCEEEEEEcC------CCeEEE
Confidence 44 5776643233 89999885 566554321 111110 012344444 35566666532 125667
Q ss_pred eecCCCCCCceEee--ccCCCceeeeEEE
Q 012701 429 WVPSEGPPQWNLLA--RKQSANFVYNCAV 455 (458)
Q Consensus 429 ~~~~~~~~~W~~l~--~~p~~~~~~~~~v 455 (458)
|+.+.+ .-+.++ ..|.+.+.-+|+-
T Consensus 337 ~~~~~~--~l~~~~~~~~~~p~~~~~~~~ 363 (365)
T 1jof_A 337 YRWKDE--FLHRVARVRIPEPGFGMNAIW 363 (365)
T ss_dssp EEEETT--EEEEEEEEECCSTTEEEEEEE
T ss_pred EEEchh--hCceeeEEEcCCCcceeeeEe
Confidence 776553 223333 3456666666553
No 350
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=26.02 E-value=7e+02 Score=27.56 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=69.0
Q ss_pred ceeeEEEeCCEEEEEeccCCCCCccCeEEEEeCCCCcEE-EcC----CCCCCCcceeEEEE---CCEEEEEccccCCCCc
Q 012701 241 CLFGSASLGEIAILAGGSDLEGNILSSAEMYNSETQTWK-VLP----SMKNPRKMCSGVFM---DGKFYVIGGIGGSDSK 312 (458)
Q Consensus 241 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~----~~p~~r~~~~~~~~---~g~lyv~GG~~~~~~~ 312 (458)
.++++....+.+ ++|.-... .....++.|......|- ... .+...-.++++++. ++..+|+|--. ..
T Consensus 335 ~GfSa~~t~d~~-~~GapG~~-~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~g~~~~v~GAP~---~~ 409 (1095)
T 3k6s_A 335 EGFSAVFTPDGP-VLGAVGSF-TWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWKGVQSLVLGAPR---YQ 409 (1095)
T ss_dssp TTSSEECCTTCC-EEEESCST-TTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCSSSCEEEEEETT---GG
T ss_pred ccccceecCCcc-eEcccccC-CccceeEEecCCCcceeeccccccccccccccceeeEEeccCCceEEEEEccc---cc
Confidence 345555555555 77764432 34567888887655433 221 12222234555432 23456666322 12
Q ss_pred ccceEEEEECCCCceEEcCCCCCCCCCCCCCCCCCCCcCCCCEEEEEC------CEEEEEEcC-------CCeEEEEeCC
Q 012701 313 VLTCGEEYDLETETWTEIPNMSPARGGAARGTEMPASAEAPPLVAVVN------NELYAADYA-------DMEVRKYDKE 379 (458)
Q Consensus 313 ~~~~v~~yd~~~~~W~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~~~------~~lyv~gg~-------~~~v~~yd~~ 379 (458)
....+++|......|.....+.....+. .++.++++.+ ..|+++|.- .+.+++|...
T Consensus 410 ~~G~V~i~~~~~~~~~~~~~~~g~~~gs----------~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~ 479 (1095)
T 3k6s_A 410 HTGKAVIFTQVSRQWRMKAEVTGTQIGS----------YFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLP 479 (1095)
T ss_dssp GTCEEEEEECCTTTCCEEEEECCSSTTS----------CTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECC
T ss_pred ccceEEEEEecCCcceEEeecccCcccC----------cCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeC
Confidence 3456888988877887654322211111 1222566542 257777732 3678998654
Q ss_pred C--CceEEeccC
Q 012701 380 R--RLWFTIGRL 389 (458)
Q Consensus 380 ~--~~W~~v~~l 389 (458)
. ..|.....+
T Consensus 480 ~~~~~~~~~~~l 491 (1095)
T 3k6s_A 480 RGWRRWWCDAVL 491 (1095)
T ss_dssp SSTTCCCSCSSC
T ss_pred CCCcceeeeEEe
Confidence 3 458755443
No 351
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=25.00 E-value=3.7e+02 Score=23.96 Aligned_cols=179 Identities=7% Similarity=-0.005 Sum_probs=92.3
Q ss_pred CCEEEEEcCCCCCcCccceEEEEEcCCCceeeCCCCCCCCceeeEEEeC-CEEEEEeccCCCCCccCeEEEEeCCCCc--
Q 012701 201 GTELLVFGRELTAHHISHVIYRYSILTNSWSSGMRMNAPRCLFGSASLG-EIAILAGGSDLEGNILSSAEMYNSETQT-- 277 (458)
Q Consensus 201 ~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~-- 277 (458)
++.||++... ...++.+|+..+.+++++- ....-..+.+..+ +.++|.--. ...+.+|+...+.
T Consensus 38 ~~~L~aV~d~------~~~I~~ld~~g~v~~~i~l-~g~~D~EGIa~~~~g~~~vs~E~------~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 38 SNTLFSTINK------PAAIVEMTTNGDLIRTIPL-DFVKDLETIEYIGDNQFVISDER------DYAIYVISLTPNSEV 104 (255)
T ss_dssp TTEEEEEEET------TEEEEEEETTCCEEEEEEC-SSCSSEEEEEECSTTEEEEEETT------TTEEEEEEECTTCCE
T ss_pred CCEEEEEECC------CCeEEEEeCCCCEEEEEec-CCCCChHHeEEeCCCEEEEEECC------CCcEEEEEcCCCCee
Confidence 5789988643 4569999998666766532 2123334555554 454454211 2557777665543
Q ss_pred EE--EcC-CC--CCCCcceeEEEE---CCEEEEEccccCCCCcccceEEEEEC--CCCceEEcCC--C---CCCCCCCCC
Q 012701 278 WK--VLP-SM--KNPRKMCSGVFM---DGKFYVIGGIGGSDSKVLTCGEEYDL--ETETWTEIPN--M---SPARGGAAR 342 (458)
Q Consensus 278 W~--~~~-~~--p~~r~~~~~~~~---~g~lyv~GG~~~~~~~~~~~v~~yd~--~~~~W~~i~~--~---p~~r~~~~~ 342 (458)
|. ... ++ .....+..+..+ +++||+.-... ...++.|+- .++.-+.+.. + ...+.-
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~------p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~--- 175 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN------PIEVYKVNGLLSSNELHISKDKALQRQFTLDDV--- 175 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS------SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC---
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC------CceEEEEcccccCCceeeecchhhccccccCCc---
Confidence 42 111 11 122344455544 45899975433 236788872 2221121110 0 000111
Q ss_pred CCCCCCCcCCCCEEEEE--CCEEEEEEcCCCeEEEEeCCCCceEEeccCCCccCC-----CCcccEEEEEeCCEEEEEc
Q 012701 343 GTEMPASAEAPPLVAVV--NNELYAADYADMEVRKYDKERRLWFTIGRLPERANS-----MNGWGLAFRACGDRLIVIG 414 (458)
Q Consensus 343 ~~~~~~~~~~~~~~~~~--~~~lyv~gg~~~~v~~yd~~~~~W~~v~~lp~~~~~-----~~~~~~a~~~~~~~lyv~G 414 (458)
.+++.. .+++|++......+..+|...+.=... .|+..... ...-|.++. -++.|||++
T Consensus 176 -----------S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~-~L~~g~~~l~~~~~qpEGia~d-~~G~lyIvs 241 (255)
T 3qqz_A 176 -----------SGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEM-SLTKGSRGLSHNIKQAEGVAMD-ASGNIYIVS 241 (255)
T ss_dssp -----------CEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEE-ECSTTGGGCSSCCCSEEEEEEC-TTCCEEEEE
T ss_pred -----------eeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEE-EcCCccCCcccccCCCCeeEEC-CCCCEEEEc
Confidence 144544 678999998889999999876532222 23221100 011234443 356899996
No 352
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=22.15 E-value=4.7e+02 Score=24.18 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=17.0
Q ss_pred ECCEEEEEEcCC-------------CeEEEEeCCCC
Q 012701 359 VNNELYAADYAD-------------MEVRKYDKERR 381 (458)
Q Consensus 359 ~~~~lyv~gg~~-------------~~v~~yd~~~~ 381 (458)
-+|.||+.-|.. +.|+++|++..
T Consensus 139 pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~ 174 (353)
T 2g8s_A 139 GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE 174 (353)
T ss_dssp SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence 378999986542 47999998753
No 353
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.96 E-value=53 Score=21.11 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=18.0
Q ss_pred CCCCCCCCChhHHHHhhcccCcc
Q 012701 102 LDSLIQPIGRDNSISCLIRCSRS 124 (458)
Q Consensus 102 ~~~l~~~LP~dl~~~iL~rlp~~ 124 (458)
+...+..||.|+.+++|+--.+.
T Consensus 17 D~eVF~~LP~dIQ~Ells~~~~e 39 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSGKSRE 39 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTCCCSC
T ss_pred CHHHHHHCcHHHHHHHHhcchHH
Confidence 44577899999999999866544
Done!