Query 012702
Match_columns 458
No_of_seqs 115 out of 135
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:25:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012702.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012702hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04765 DUF616: Protein of un 100.0 2E-115 5E-120 867.2 25.8 304 94-402 1-305 (305)
2 cd04194 GT8_A4GalT_like A4GalT 92.8 0.2 4.4E-06 47.9 5.6 110 239-379 84-199 (248)
3 cd00505 Glyco_transf_8 Members 88.1 2.8 6E-05 40.5 8.7 160 186-380 30-201 (246)
4 PF01501 Glyco_transf_8: Glyco 87.5 0.93 2E-05 41.9 4.9 113 238-378 86-204 (250)
5 PF03407 Nucleotid_trans: Nucl 66.8 14 0.00031 34.4 6.0 90 250-380 66-156 (212)
6 cd06429 GT8_like_1 GT8_like_1 60.0 14 0.00031 36.9 4.8 96 185-287 28-148 (257)
7 PLN02718 Probable galacturonos 55.3 27 0.00059 39.5 6.4 96 185-287 341-452 (603)
8 cd06432 GT8_HUGT1_C_like The C 46.7 30 0.00066 34.2 4.6 44 242-287 86-130 (248)
9 PF03452 Anp1: Anp1; InterPro 40.0 31 0.00066 35.3 3.6 46 242-290 134-179 (269)
10 cd06431 GT8_LARGE_C LARGE cata 37.5 36 0.00078 34.4 3.6 98 185-287 29-135 (280)
11 PF05637 Glyco_transf_34: gala 36.0 26 0.00056 34.6 2.3 55 221-275 43-101 (239)
12 cd02537 GT8_Glycogenin Glycoge 33.5 1.4E+02 0.0031 28.9 7.0 53 220-273 53-112 (240)
13 PF03314 DUF273: Protein of un 32.9 36 0.00077 34.1 2.7 59 244-308 35-93 (222)
14 PLN02742 Probable galacturonos 29.3 98 0.0021 34.7 5.5 121 159-286 229-386 (534)
15 PLN00176 galactinol synthase 24.1 1.5E+02 0.0032 31.2 5.5 103 156-273 19-135 (333)
16 KOG0400 40S ribosomal protein 20.6 92 0.002 29.3 2.8 51 279-347 8-58 (151)
17 TIGR03042 PS_II_psbQ_bact phot 20.4 77 0.0017 29.7 2.3 18 23-40 7-24 (142)
No 1
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=100.00 E-value=2.1e-115 Score=867.17 Aligned_cols=304 Identities=51% Similarity=0.938 Sum_probs=295.2
Q ss_pred eeeEeeeccccCCCCCCCCCCCCCCChhhhhhccCCCCceeeecccccCCCCCCChhhHHHhhcCCEEEEEeeecCCCCC
Q 012702 94 NLTYFLEDEFVHNGSQSSPLFGGHQSWLQREESFKLNSNMKVHCGFMRNGGAEMSPLDVKYVKKCKFVVASGIFDGYDVP 173 (458)
Q Consensus 94 ~l~yi~~~~~~~~~~~~~~~FgG~~s~~~R~~sf~~~~~~~v~CGF~~~~gf~i~e~d~~~m~~ckvVVyTaIFG~YD~L 173 (458)
||+||.+|+++. +.++++|||||||+||++||+++++|+|||||++++||||||.|+.||++|+|||||||||+||+|
T Consensus 1 nl~y~~~~~~~~--~~~~~~f~g~~s~~~R~~sf~~~~~~~v~Cgf~~~~gf~i~~~d~~~m~~c~vvV~saIFG~yD~l 78 (305)
T PF04765_consen 1 NLTYIEEENKPE--SGRGPSFGGNQSLEERESSFDIQEDMTVHCGFVKNTGFDISESDRRYMEKCRVVVYSAIFGNYDKL 78 (305)
T ss_pred CCcccccccccc--cCCCCCcCCcCCHHHHHHhcCCCCCceeccccccCCCCCCCHHHHHHHhcCCEEEEEEecCCCccc
Confidence 799999998555 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCCccccCCccccccccCCCCCCE
Q 012702 174 HQPSNISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDEPRRNGKVPKILTHRLFPQAQY 253 (458)
Q Consensus 174 ~~P~~is~~s~d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~lpy~d~rrngRipKiLpHrLFPny~y 253 (458)
+||+++++.++++|||+||||++|+++|++++.++ ++++++|+||||+|+++||+|+|||||+||+|||+|||||+|
T Consensus 79 ~qP~~i~~~s~~~vcf~mF~D~~t~~~l~~~~~~~---~~~~~ig~WrIv~v~~lp~~d~rr~~r~~K~lpHrlfp~y~y 155 (305)
T PF04765_consen 79 RQPKNISEYSKKNVCFFMFVDEETLKSLESEGHIP---DENKKIGIWRIVVVKNLPYDDPRRNGRIPKLLPHRLFPNYDY 155 (305)
T ss_pred cCchhhCHHHhcCccEEEEEehhhHHHHHhcCCcc---ccccccCceEEEEecCCCCcchhhcCcccceeccccCCCCce
Confidence 99999999999999999999999999999998875 356799999999999999999999999999999999999999
Q ss_pred EEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccCC-CC
Q 012702 254 SIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIKK-NT 332 (458)
Q Consensus 254 SIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y~~eGlp~~~~~k-p~ 332 (458)
||||||||+|++||++||+++||+++++|||++||.|+||||||+||++++|++++.|++||++|+++|||+|++.| |+
T Consensus 156 SIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~I~~Qm~~Y~~eGlp~~s~~k~~l 235 (305)
T PF04765_consen 156 SIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPERIDEQMEFYKQEGLPPWSPAKLPL 235 (305)
T ss_pred EEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997665 88
Q ss_pred CCCCCcceEEEccCCcchhhhHHHHHHHHhccCCCCcccHHHHHHHhcCcceeccccccccCCceeEecC
Q 012702 333 VSDVPEGAVIIREHTALSNLFSCLWFNEVNLLTPRDQLSFGYVVYRLKGLFKFYMFPNCEYNSLFVLHPH 402 (458)
Q Consensus 333 ~sgLpE~~vIiR~Ht~~snlf~clWfnEv~rft~RDQLSF~Yvl~Klg~~~~~~Mf~~c~rn~~f~~~~H 402 (458)
.+|||||+||||+|++++|+|||+|||||++||+||||||+||+||++.++++|||+||+|++++++++|
T Consensus 236 ~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rfs~RDQLSF~Yv~wk~~~~~~~~mf~~~~~~~~~~~~~h 305 (305)
T PF04765_consen 236 PSDVPEGNIIIRKHNPMSNLFMCLWFNEVERFSPRDQLSFPYVLWKLGPKFKLNMFKDCERRQLVVLYRH 305 (305)
T ss_pred ccCCccceEEEecCCchhHHHHHHHHHHHhcCCCcccchHHHHHHHhCCcccchhhhHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998
No 2
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=92.84 E-value=0.2 Score=47.92 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=69.5
Q ss_pred ccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH
Q 012702 239 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 318 (458)
Q Consensus 239 ipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y 318 (458)
+.|++...+||+++.-||+|+-+.+.+|+..|.+.-+ ++..+|+..|..... +.. . +
T Consensus 84 y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~--~~~~~aa~~d~~~~~---~~~----~-~------------- 140 (248)
T cd04194 84 YYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDL--GDNLLAAVRDPFIEQ---EKK----R-K------------- 140 (248)
T ss_pred HHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCc--CCCEEEEEecccHHH---HHH----H-H-------------
Confidence 3478899999999999999999999999999987544 567788877643111 000 0 0
Q ss_pred HHcCCCCcccCCCCCCCCCcceEEEccCC-----cchhhhHHHHHHHHh-ccCCCCcccHHHHHHHh
Q 012702 319 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVYRL 379 (458)
Q Consensus 319 ~~eGlp~~~~~kp~~sgLpE~~vIiR~Ht-----~~snlf~clWfnEv~-rft~RDQLSF~Yvl~Kl 379 (458)
...+.++ ..+.+-+||++=+-. ...+.+. .|..+.. ++.-.||-.++.+.+..
T Consensus 141 ~~~~~~~-------~~~yfNsGv~l~nl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 141 RRLGGYD-------DGSYFNSGVLLINLKKWREENITEKLL-ELIKEYGGRLIYPDQDILNAVLKDK 199 (248)
T ss_pred hhcCCCc-------ccceeeecchheeHHHHHHhhhHHHHH-HHHHhCCCceeeCChHHHHHHHhCC
Confidence 1122221 234566778774322 1222223 2333322 36679999999998874
No 3
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=88.14 E-value=2.8 Score=40.47 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=94.8
Q ss_pred eeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCC------CccccCCccccccccCCCCCCEEEEEec
Q 012702 186 LFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYD------EPRRNGKVPKILTHRLFPQAQYSIWIDG 259 (458)
Q Consensus 186 ~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~lpy~------d~rrngRipKiLpHrLFPny~ySIWIDg 259 (458)
.+.|..++|+.+....+.-..+. .. ....-+++.++...+. ......-+.|++..++||+++--||+|+
T Consensus 30 ~~~~~il~~~is~~~~~~L~~~~-~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~ 104 (246)
T cd00505 30 PLRFHVLTNPLSDTFKAALDNLR-KL----YNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDA 104 (246)
T ss_pred CeEEEEEEccccHHHHHHHHHHH-hc----cCceEEEEeccccCcchhhhhcCccccceeHHHHHHHHhhccCeEEEEcC
Confidence 57788888876654332211110 00 0123455555422221 2233444789999999999999999999
Q ss_pred ceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH-HHcCCCCcccCCCCCCCCCc
Q 012702 260 KMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY-RYEGMEPWSIKKNTVSDVPE 338 (458)
Q Consensus 260 kiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y-~~eGlp~~~~~kp~~sgLpE 338 (458)
-+.+..|+.+|.+--+ ++..+|+..-..- . ... +.| +..|++. ....+-
T Consensus 105 D~iv~~di~~L~~~~l--~~~~~aav~d~~~--~--------~~~-----------~~~~~~~~~~~-------~~~yfN 154 (246)
T cd00505 105 DILVLTDIDELWDTPL--GGQELAAAPDPGD--R--------REG-----------KYYRQKRSHLA-------GPDYFN 154 (246)
T ss_pred CeeeccCHHHHhhccC--CCCeEEEccCchh--h--------hcc-----------chhhcccCCCC-------CCCcee
Confidence 9999999999998666 5667887754210 0 000 111 1233431 123566
Q ss_pred ceEEEccCCcc-----hhhhHHHHHHHHhccCCCCcccHHHHHHHhc
Q 012702 339 GAVIIREHTAL-----SNLFSCLWFNEVNLLTPRDQLSFGYVVYRLK 380 (458)
Q Consensus 339 ~~vIiR~Ht~~-----snlf~clWfnEv~rft~RDQLSF~Yvl~Klg 380 (458)
++|++=+-... .......|.+...+..--||=.++.+....+
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~ 201 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVP 201 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCC
Confidence 88888444332 2223334555556788899999999887764
No 4
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=87.53 E-value=0.93 Score=41.95 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=64.3
Q ss_pred CccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHH
Q 012702 238 KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKI 317 (458)
Q Consensus 238 RipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~ 317 (458)
-+.|++.+.+||+|+--||+|+-+.+.+|+..+.+.-+ ++..+|+... .....
T Consensus 86 ~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~--~~~~~~a~~~-------------------------~~~~~ 138 (250)
T PF01501_consen 86 TFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDL--QGKYLAAVED-------------------------ESFDN 138 (250)
T ss_dssp GGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC-----TTSSEEEEE-----------------------------HH
T ss_pred HHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccc--hhhhcccccc-------------------------chhhh
Confidence 35689999999999999999999999999999998666 4666777766 00111
Q ss_pred HHHcCCCCcccCC-CCCCCCCcceEEEccCCcch-hhhHHHHHHHHh----ccCCCCcccHHHHHHH
Q 012702 318 YRYEGMEPWSIKK-NTVSDVPEGAVIIREHTALS-NLFSCLWFNEVN----LLTPRDQLSFGYVVYR 378 (458)
Q Consensus 318 Y~~eGlp~~~~~k-p~~sgLpE~~vIiR~Ht~~s-nlf~clWfnEv~----rft~RDQLSF~Yvl~K 378 (458)
+- .+-....... +...+.+-+||++=+-.... +.+...+-+.++ +..-.||=-++++...
T Consensus 139 ~~-~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~~ 204 (250)
T PF01501_consen 139 FP-NKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFYG 204 (250)
T ss_dssp HH-TSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHTT
T ss_pred hh-hcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhccc
Confidence 11 1111111111 23456778888884433221 222222222222 2455899999998873
No 5
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=66.76 E-value=14 Score=34.44 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccC
Q 012702 250 QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIK 329 (458)
Q Consensus 250 ny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y~~eGlp~~~~~ 329 (458)
+++ -+++|+-+.+..||..+++ ..+.++.++.-....... +.
T Consensus 66 G~~-vl~~D~Dvv~~~dp~~~~~----~~~~Di~~~~d~~~~~~~-----------------------~~---------- 107 (212)
T PF03407_consen 66 GYD-VLFSDADVVWLRDPLPYFE----NPDADILFSSDGWDGTNS-----------------------DR---------- 107 (212)
T ss_pred CCc-eEEecCCEEEecCcHHhhc----cCCCceEEecCCCcccch-----------------------hh----------
Confidence 444 5689999999999998881 256677776521111000 00
Q ss_pred CCCCCCCCcceEEEccCCcchhhhHHHHHHHHhccCC-CCcccHHHHHHHhc
Q 012702 330 KNTVSDVPEGAVIIREHTALSNLFSCLWFNEVNLLTP-RDQLSFGYVVYRLK 380 (458)
Q Consensus 330 kp~~sgLpE~~vIiR~Ht~~snlf~clWfnEv~rft~-RDQLSF~Yvl~Klg 380 (458)
....+-++++.=+.|+.+..|+..|-....+.+. .||-.|+.++....
T Consensus 108 ---~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 ---NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLREQA 156 (212)
T ss_pred ---cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhcc
Confidence 0112246777777799999999999999999955 79999999999953
No 6
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=59.95 E-value=14 Score=36.90 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=62.3
Q ss_pred ceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCC-----c---------------cccCC-----c
Q 012702 185 KLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDE-----P---------------RRNGK-----V 239 (458)
Q Consensus 185 d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~lpy~d-----~---------------rrngR-----i 239 (458)
..++|..|+|..+...++.-.... . ...-..+++.+++..+.+ + .+... +
T Consensus 28 ~~~~fhvvtd~~s~~~~~~~~~~~--~---~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y 102 (257)
T cd06429 28 SNLVFHIVTDNQNYGAMRSWFDLN--P---LKIATVKVLNFDDFKLLGKVKVDSLMQLESEADTSNLKQRKPEYISLLNF 102 (257)
T ss_pred CceEEEEecCccCHHHHHHHHHhc--C---CCCceEEEEEeCcHHhhcccccchhhhhhccccccccccCCccccCHHHH
Confidence 468899999988877766532110 0 011345666665322111 1 11111 4
Q ss_pred cccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 012702 240 PKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 287 (458)
Q Consensus 240 pKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~H 287 (458)
.+++.-.+||+++--||+|+-+.+.+|..+|.+.=+ ++..+|+...
T Consensus 103 ~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl--~~~~~aav~d 148 (257)
T cd06429 103 ARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDL--GGGVAGAVET 148 (257)
T ss_pred HHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCC--CCCEEEEEhh
Confidence 466677889999999999999999999999998655 4667777655
No 7
>PLN02718 Probable galacturonosyltransferase
Probab=55.27 E-value=27 Score=39.46 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=61.4
Q ss_pred ceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCC---C--CCC-----ccccCC------ccccccccCC
Q 012702 185 KLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHP---P--YDE-----PRRNGK------VPKILTHRLF 248 (458)
Q Consensus 185 d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~l---p--y~d-----~rrngR------ipKiLpHrLF 248 (458)
..++|..|+|..+...++.=.... . . ....+.|+.+++. | |.+ +..+.+ +.+++...+|
T Consensus 341 ~~ivFHVvTD~is~~~mk~wf~l~-~-~---~~a~I~V~~Iddf~~lp~~~~~~lk~l~s~~~~~~S~~~y~Rl~ipell 415 (603)
T PLN02718 341 EKIVFHVVTDSLNYPAISMWFLLN-P-P---GKATIQILNIDDMNVLPADYNSLLMKQNSHDPRYISALNHARFYLPDIF 415 (603)
T ss_pred CcEEEEEEeCCCCHHHHHHHHHhC-C-C---CCcEEEEEecchhccccccchhhhhhccccccccccHHHHHHHHHHHHh
Confidence 469999999998887776321111 0 1 1235667776632 1 111 011111 2355666789
Q ss_pred CCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 012702 249 PQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 287 (458)
Q Consensus 249 Pny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~H 287 (458)
|+.+--||+|+-+.+.+|...|.+-=+ ++.-+|+...
T Consensus 416 p~l~KvLYLD~DvVV~~DL~eL~~iDl--~~~v~aaVed 452 (603)
T PLN02718 416 PGLNKIVLFDHDVVVQRDLSRLWSLDM--KGKVVGAVET 452 (603)
T ss_pred cccCEEEEEECCEEecCCHHHHhcCCC--CCcEEEEecc
Confidence 999999999999999999999887544 4566777643
No 8
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=46.69 E-value=30 Score=34.18 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=36.7
Q ss_pred cccccCCC-CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecC
Q 012702 242 ILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQH 287 (458)
Q Consensus 242 iLpHrLFP-ny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~H 287 (458)
+++..+|| +++--||+|+-+-..+|..+|.+-=+ ++.-+|+..|
T Consensus 86 L~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl--~~~~~Aav~d 130 (248)
T cd06432 86 LFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDL--KGAPYGYTPF 130 (248)
T ss_pred HHHHHhhhhccCEEEEEcCCceecccHHHHHhcCc--CCCeEEEeec
Confidence 66777898 69999999999999999999887655 5677888776
No 9
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=40.03 E-value=31 Score=35.32 Aligned_cols=46 Identities=13% Similarity=0.374 Sum_probs=37.5
Q ss_pred cccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCC
Q 012702 242 ILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHH 290 (458)
Q Consensus 242 iLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R 290 (458)
+|.|-|=|..++.+|+|+-|. .-|-.||+++. ..+.++-+++=..|
T Consensus 134 LL~~aL~p~~swVlWlDaDIv--~~P~~lI~dli-~~~kdIivPn~~~~ 179 (269)
T PF03452_consen 134 LLSSALGPWHSWVLWLDADIV--ETPPTLIQDLI-AHDKDIIVPNCWRR 179 (269)
T ss_pred HHHhhcCCcccEEEEEecCcc--cCChHHHHHHH-hCCCCEEccceeec
Confidence 677888899999999999887 78889999998 46678876654444
No 10
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=37.50 E-value=36 Score=34.41 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=60.9
Q ss_pred ceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCC--CCC---CccccCCc--cccccccCCC-CCCEEEE
Q 012702 185 KLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHP--PYD---EPRRNGKV--PKILTHRLFP-QAQYSIW 256 (458)
Q Consensus 185 d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~l--py~---d~rrngRi--pKiLpHrLFP-ny~ySIW 256 (458)
..++|..++|+.+.+.++.-...- . .....+....++.. ++. .....+.+ .+++.+.+|| +++--||
T Consensus 29 ~~~~fhii~d~~s~~~~~~l~~~~-~----~~~~~i~f~~i~~~~~~~~~~~~~~~s~~y~y~RL~ip~llp~~~dkvLY 103 (280)
T cd06431 29 NPLHFHLITDEIARRILATLFQTW-M----VPAVEVSFYNAEELKSRVSWIPNKHYSGIYGLMKLVLTEALPSDLEKVIV 103 (280)
T ss_pred CCEEEEEEECCcCHHHHHHHHHhc-c----ccCcEEEEEEhHHhhhhhccCcccchhhHHHHHHHHHHHhchhhcCEEEE
Confidence 458999999987766544422110 0 01124555665421 111 11222221 4888999999 6999999
Q ss_pred EecceEEeeCHHHHHHHHH-hcCCCeEEEecC
Q 012702 257 IDGKMELIVDPLLILERYL-WRGKHTFAIAQH 287 (458)
Q Consensus 257 IDgkiqL~~DP~~lLe~~L-wr~~~~~Ais~H 287 (458)
+|+-+.+.+|+.+|.+-+. ..++.-+|+..+
T Consensus 104 LD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~ 135 (280)
T cd06431 104 LDTDITFATDIAELWKIFHKFTGQQVLGLVEN 135 (280)
T ss_pred EcCCEEEcCCHHHHHHHhhhcCCCcEEEEecc
Confidence 9999999999999998641 224455666654
No 11
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=36.05 E-value=26 Score=34.56 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=22.5
Q ss_pred EEEEcCCCCCCCccccCCcccc--ccccC--CCCCCEEEEEecceEEeeCHHHHHHHHH
Q 012702 221 RLILLKHPPYDEPRRNGKVPKI--LTHRL--FPQAQYSIWIDGKMELIVDPLLILERYL 275 (458)
Q Consensus 221 rIV~V~~lpy~d~rrngRipKi--LpHrL--FPny~ySIWIDgkiqL~~DP~~lLe~~L 275 (458)
.+..+....+.++-+.+-+-|+ +-|.+ ||++++-.|+|+..-|+.-=..|-+.+|
T Consensus 43 ~~~~~~~~~~~~~~~~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il 101 (239)
T PF05637_consen 43 DLYYRNIQEYDDPERPGSWAKIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHIL 101 (239)
T ss_dssp EEEEE-S--S--SHHHHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE------------
T ss_pred EEEEEChHHcCCCCCChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecccccccccc
Confidence 4444333334444444446674 43334 6999999999999888543333333343
No 12
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=33.53 E-value=1.4e+02 Score=28.88 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.1
Q ss_pred eEEEEcCCCCCC-------CccccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHHH
Q 012702 220 WRLILLKHPPYD-------EPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILER 273 (458)
Q Consensus 220 WrIV~V~~lpy~-------d~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~ 273 (458)
++++.|+.+... +.+-.+.+.|+..-.+ ++++--||+|+-+.+..|+..|.+.
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~~~~l-~~~drvlylD~D~~v~~~i~~Lf~~ 112 (240)
T cd02537 53 WIVREVEPIDPPDSANLLKRPRFKDTYTKLRLWNL-TEYDKVVFLDADTLVLRNIDELFDL 112 (240)
T ss_pred CEEEecCccCCcchhhhccchHHHHHhHHHHhccc-cccceEEEEeCCeeEccCHHHHhCC
Confidence 567766643221 2234445778777775 5899999999999999998888764
No 13
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=32.87 E-value=36 Score=34.07 Aligned_cols=59 Identities=12% Similarity=0.259 Sum_probs=42.3
Q ss_pred cccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCCh
Q 012702 244 THRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYAR 308 (458)
Q Consensus 244 pHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~ 308 (458)
.+.++|++++-+++||-|-+ ++|...||.|+ .++.++-.+.-.. =-|+.|..-+-|-.+
T Consensus 35 va~~L~~~~~vlflDaDigV-vNp~~~iEefi-d~~~Di~fydR~~----n~Ei~agsYlvkNT~ 93 (222)
T PF03314_consen 35 VAKILPEYDWVLFLDADIGV-VNPNRRIEEFI-DEGYDIIFYDRFF----NWEIAAGSYLVKNTE 93 (222)
T ss_pred HHHHhccCCEEEEEcCCcee-ecCcccHHHhc-CCCCcEEEEeccc----chhhhhccceeeCCH
Confidence 35678999999999999977 79999999999 5777887765332 245665443333333
No 14
>PLN02742 Probable galacturonosyltransferase
Probab=29.29 E-value=98 Score=34.73 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=69.3
Q ss_pred CEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCCCCCC----c-
Q 012702 159 KFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHPPYDE----P- 233 (458)
Q Consensus 159 kvVVyTaIFG~YD~L~~P~~is~~s~d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~lpy~d----~- 233 (458)
+.||.|=-.++-=....-.-.+...-..+-|-.+||..+...|+.=-..- + ..--.|.|..+++..... |
T Consensus 229 Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n-~----~~~a~v~V~n~e~f~wl~~~~~pv 303 (534)
T PLN02742 229 HFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMN-D----FKGVTVEVQKIEEFSWLNASYVPV 303 (534)
T ss_pred eEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhC-C----CCccEEEEEEeccccccccccchH
Confidence 46666643333222222222222222558899999999988887622110 1 112457777666421110 0
Q ss_pred --------------------------cccCCcc------ccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCe
Q 012702 234 --------------------------RRNGKVP------KILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHT 281 (458)
Q Consensus 234 --------------------------rrngRip------KiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~ 281 (458)
.|+-++. +++.-++||+.+--||+|+-+.+.+|..+|.+-=| ++.-
T Consensus 304 l~ql~~~~~~~~yf~~~~~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL--~~~v 381 (534)
T PLN02742 304 LKQLQDSDTQSYYFSGSQDDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDL--HGNV 381 (534)
T ss_pred HHHhhhhhhhhhhcccccccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCC--CCCE
Confidence 1111121 22333689999999999999999999999887545 4666
Q ss_pred EEEec
Q 012702 282 FAIAQ 286 (458)
Q Consensus 282 ~Ais~ 286 (458)
+|+..
T Consensus 382 iaAVe 386 (534)
T PLN02742 382 NGAVE 386 (534)
T ss_pred EEEeC
Confidence 77763
No 15
>PLN00176 galactinol synthase
Probab=24.07 E-value=1.5e+02 Score=31.23 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=61.1
Q ss_pred hcCCEEEEEeeecCCCCCCCCC-------CCCccCcceeEEEEEeehhhHHHHhhccccccCCCCCceeeceEEEEcCCC
Q 012702 156 KKCKFVVASGIFDGYDVPHQPS-------NISRRSKKLFCFLMVMDEVSLKFIRKNVTIKEDSAGGQWVGIWRLILLKHP 228 (458)
Q Consensus 156 ~~ckvVVyTaIFG~YD~L~~P~-------~is~~s~d~VCF~mF~De~t~~~l~~~~~~~~D~~~~~~vg~WrIV~V~~l 228 (458)
+..+-|-+|.+.+|.|-+..-. ..+. ..+.||++ ++|++....+. + ..-.|.|+.|+.+
T Consensus 19 ~~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s-~~~lVvlV--t~dVp~e~r~~---L--------~~~g~~V~~V~~i 84 (333)
T PLN00176 19 KPAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKS-AYPLVVAV--LPDVPEEHRRI---L--------VSQGCIVREIEPV 84 (333)
T ss_pred ccCceEEEEEEecCcchHHHHHHHHHHHHHhCC-CCCEEEEE--CCCCCHHHHHH---H--------HHcCCEEEEeccc
Confidence 3447788888888877654321 1221 24778876 67766533211 0 0112466766643
Q ss_pred -CCCCc-cccC-----CccccccccCCCCCCEEEEEecceEEeeCHHHHHHH
Q 012702 229 -PYDEP-RRNG-----KVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILER 273 (458)
Q Consensus 229 -py~d~-rrng-----RipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~ 273 (458)
|-... .... -+.|++.-+| .+|+--||+|+-+.+..+..+|.+.
T Consensus 85 ~~~~~~~~~~~~~~~i~~tKl~iw~l-~~ydkvlyLDaD~lv~~nid~Lf~~ 135 (333)
T PLN00176 85 YPPENQTQFAMAYYVINYSKLRIWEF-VEYSKMIYLDGDIQVFENIDHLFDL 135 (333)
T ss_pred CCcccccccccchhhhhhhhhhhccc-cccceEEEecCCEEeecChHHHhcC
Confidence 11111 1000 1456666554 5899999999999999999998864
No 16
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.63 E-value=92 Score=29.26 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHHHHcCCCCcccCCCCCCCCCcceEEEccCC
Q 012702 279 KHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIYRYEGMEPWSIKKNTVSDVPEGAVIIREHT 347 (458)
Q Consensus 279 ~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y~~eGlp~~~~~kp~~sgLpE~~vIiR~Ht 347 (458)
+-.++-+.-|+|..+= .|=|-+.+.|++|+-.+-+-|++| +.-+||+|+-+
T Consensus 8 GKGis~SAlPY~r~~P-------tWlK~~~ddvkeqI~K~akKGltp-----------sqIGviLRDsh 58 (151)
T KOG0400|consen 8 GKGISGSALPYRRSVP-------TWLKLTADDVKEQIYKLAKKGLTP-----------SQIGVILRDSH 58 (151)
T ss_pred CcccccCccccccCCc-------HHHhcCHHHHHHHHHHHHHcCCCh-----------hHceeeeeccc
Confidence 3346666677776541 233557889999999999999996 34689998754
No 17
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.42 E-value=77 Score=29.70 Aligned_cols=18 Identities=44% Similarity=0.682 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhccCcchH
Q 012702 23 LILVVLLFHVWSCQSSLA 40 (458)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (458)
++|++++.-+|||+++.+
T Consensus 7 ~~Lv~~~~~Lvsc~~p~~ 24 (142)
T TIGR03042 7 LLLVLLLTFLVSCSGPAA 24 (142)
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 333333333899999875
Done!