Query 012702
Match_columns 458
No_of_seqs 115 out of 135
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:35:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012702.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012702hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 77.9 1.6 5.4E-05 41.9 3.8 49 239-289 88-137 (276)
2 1g9r_A Glycosyl transferase; a 52.8 5 0.00017 38.7 1.7 108 239-377 84-197 (311)
3 3u2u_A Glycogenin-1, GN-1, GN1 26.5 58 0.002 31.2 4.4 52 220-272 57-117 (263)
4 2dha_A FLJ20171 protein; RRM d 18.6 51 0.0017 27.8 2.0 86 109-205 2-89 (123)
5 2fc9_A NCL protein; structure 13.3 1.9E+02 0.0067 22.1 4.0 52 135-199 15-67 (101)
6 1ll2_A Glycogenin-1; protein-s 13.2 83 0.0028 30.9 2.2 51 221-272 57-116 (333)
7 1x4c_A Splicing factor, argini 11.3 3.9E+02 0.013 20.8 5.3 51 136-202 16-68 (108)
8 2hgm_A HNRPF protein, heteroge 11.1 5.6E+02 0.019 21.4 6.5 60 136-204 43-104 (126)
9 2mss_A Protein (musashi1); RNA 10.2 3.9E+02 0.013 19.0 4.6 52 139-199 3-55 (75)
10 1o7q_A N-acetyllactosaminide a 10.0 31 0.0011 34.3 -2.0 111 143-267 32-155 (289)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=77.91 E-value=1.6 Score=41.86 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred ccccccccCCC-CCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCC
Q 012702 239 VPKILTHRLFP-QAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKH 289 (458)
Q Consensus 239 ipKiLpHrLFP-ny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~ 289 (458)
+.|++...+|| +++--||+|+-+.+.+|+.+|.+.-+ ++..+|+..+..
T Consensus 88 ~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl--~~~~~aav~d~~ 137 (276)
T 3tzt_A 88 YYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDI--SDYILAAASHTG 137 (276)
T ss_dssp HHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCC--TTSSEEEEEC--
T ss_pred HHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCC--CCCeEEEEEecc
Confidence 56888899999 69999999999999999999987433 456788887643
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=52.82 E-value=5 Score=38.68 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=67.4
Q ss_pred ccccccccCCCCCCEEEEEecceEEeeCHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHhcCCChhHHHHHHHHH
Q 012702 239 VPKILTHRLFPQAQYSIWIDGKMELIVDPLLILERYLWRGKHTFAIAQHKHHRSIYEEADANKRRKRYARPLIDYQMKIY 318 (458)
Q Consensus 239 ipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe~~Lwr~~~~~Ais~Hp~R~cVYEEA~a~~~~~K~~~~~I~~Qm~~Y 318 (458)
+.|++...+||+++--||+|+-+.+.+|+.+|.+.-+ ++..+|+..+ | +.+ .. . ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~---~-------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQ---E-------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TS---T-------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hh---H-------HHH
Confidence 5577778888999999999999999999999887433 4566777654 2 221 00 0 112
Q ss_pred HHcCCCCcccCCCCCCCCCcceEEEccCC-----cchhhhHHHHHHHHh-ccCCCCcccHHHHHH
Q 012702 319 RYEGMEPWSIKKNTVSDVPEGAVIIREHT-----ALSNLFSCLWFNEVN-LLTPRDQLSFGYVVY 377 (458)
Q Consensus 319 ~~eGlp~~~~~kp~~sgLpE~~vIiR~Ht-----~~snlf~clWfnEv~-rft~RDQLSF~Yvl~ 377 (458)
..-|+++ ..+.+-+||++=+-. ...+.+. .|.++.. ++.--||=-++.+..
T Consensus 141 ~~~~~~~-------~~~yfNsGv~linl~~~r~~~~~~~~~-~~~~~~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 141 QKIGMAD-------GEYYFNAGVLLINLKKWRRHDIFKMSS-EWVEQYKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHTTCCT-------TSCCEEEEEEEECHHHHTTSCHHHHHH-HHHHHHTTTCSSHHHHHHHHHHT
T ss_pred HhcCCCC-------CCceEeeeeeeeeHHHHHhcchHHHHH-HHHHhccCcCccCCcCHHHHHHc
Confidence 3456653 234677888874432 1222222 3444432 345579988887765
No 3
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=26.46 E-value=58 Score=31.20 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=37.9
Q ss_pred eEEEEcCCCCCC---------CccccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHH
Q 012702 220 WRLILLKHPPYD---------EPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 272 (458)
Q Consensus 220 WrIV~V~~lpy~---------d~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe 272 (458)
.+++.|+.+... .++...-+.|++..++. +|+--||+|+-+.+..|+.+|.+
T Consensus 57 ~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 57 DEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 467777754322 23334457798888875 69999999999999999776654
No 4
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.57 E-value=51 Score=27.79 Aligned_cols=86 Identities=14% Similarity=-0.044 Sum_probs=46.9
Q ss_pred CCCCCCCCCCChhhhhhccCCCCceeeecccccCCCCCCChhhHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCccee
Q 012702 109 QSSPLFGGHQSWLQREESFKLNSNMKVHCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLF 187 (458)
Q Consensus 109 ~~~~~FgG~~s~~~R~~sf~~~~~~~v~CGF~~~~gf~i~e~d~~~m-~~ckvVVyTaIFG~YD~L~~P~~is~~s~d~V 187 (458)
..++.+||.....+|.-. -. .-.+=|+.|=+++.++.|+... +++..|+ |.-+.++-+..-+- ....+
T Consensus 2 ~~g~~~~g~~~~~~~~~~--~~---~~~~v~V~nLp~~~te~dl~~~F~~~g~v~-----g~v~~v~i~~d~~g-r~~G~ 70 (123)
T 2dha_A 2 SSGSSGGGTSNEVAQFLS--KE---NQVIVRMRGLPFTATAEEVVAFFGQHCPIT-----GGKEGILFVTYPDG-RPTGD 70 (123)
T ss_dssp CCCSSSCCCCHHHHHHHH--CC---SCCEEEECSCCTTCCHHHHHHHHHTTSCCT-----TGGGGEEEEECTTS-CEEEE
T ss_pred CCCCCCCCCchhHHhhcc--CC---CCCEEEEeCCCCCCCHHHHHHHHHhhCCcc-----CCcceEEEEECCCC-CEeeE
Confidence 457889997776555432 22 2345567888899999998765 5553210 00011111111011 12678
Q ss_pred EEEEEeehhhH-HHHhhcc
Q 012702 188 CFLMVMDEVSL-KFIRKNV 205 (458)
Q Consensus 188 CF~mF~De~t~-~~l~~~~ 205 (458)
+|+-|.++... +.|+.++
T Consensus 71 aFV~F~~~~~A~~Al~~~~ 89 (123)
T 2dha_A 71 AFVLFACEEYAQNALRKHK 89 (123)
T ss_dssp EEECCSSHHHHHHHHTTTT
T ss_pred EEEEECCHHHHHHHHHhCC
Confidence 99999776543 4444443
No 5
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=13.31 E-value=1.9e+02 Score=22.10 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred eecccccCCCCCCChhhHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHH
Q 012702 135 VHCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 199 (458)
Q Consensus 135 v~CGF~~~~gf~i~e~d~~~m-~~ckvVVyTaIFG~YD~L~~P~~is~~s~d~VCF~mF~De~t~~ 199 (458)
-.+=|+.|-+.++++.|+..+ +++. .++-+..-. .....+||+-|.|....+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g------------~v~~~~~~~-g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKAT------------FIKVPQNQN-GKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCS------------EEECCBCSS-SCBCSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCC------------EEEEEECCC-CCEeeEEEEEECCHHHHH
Confidence 345567787788999988765 3332 222222211 123679999998866543
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=13.16 E-value=83 Score=30.86 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=36.8
Q ss_pred EEEEcCCCCCCCc---------cccCCccccccccCCCCCCEEEEEecceEEeeCHHHHHH
Q 012702 221 RLILLKHPPYDEP---------RRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDPLLILE 272 (458)
Q Consensus 221 rIV~V~~lpy~d~---------rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP~~lLe 272 (458)
+++.|+.++..++ +...-+.|++...| ++|+--||+|+-+.+..|+..|.+
T Consensus 57 ~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 57 EVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp EEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred EEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 6777775433221 11223678888875 999999999999999999877764
No 7
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=11.34 E-value=3.9e+02 Score=20.83 Aligned_cols=51 Identities=10% Similarity=-0.017 Sum_probs=33.2
Q ss_pred ecccccCCCCCCChhhHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhH-HHHh
Q 012702 136 HCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIR 202 (458)
Q Consensus 136 ~CGF~~~~gf~i~e~d~~~m-~~ckvVVyTaIFG~YD~L~~P~~is~~s~d~VCF~mF~De~t~-~~l~ 202 (458)
.+-|+.|-+.++++.|+..+ +++.-|+..-|.-+ .+||+-|.|.... ++++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----------------TEEEEEESSHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----------------CEEEEEECCHHHHHHHHH
Confidence 34578888889999998765 56654444444322 5789999886544 3444
No 8
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=11.07 E-value=5.6e+02 Score=21.45 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=36.7
Q ss_pred ecccccCCCCCCChhhHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhH-HHHhhc
Q 012702 136 HCGFMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSL-KFIRKN 204 (458)
Q Consensus 136 ~CGF~~~~gf~i~e~d~~~m-~~ckvVVyTaIFG~YD~L~~P~~is~~s~d~VCF~mF~De~t~-~~l~~~ 204 (458)
.+=|+.|=+++++|.|+... ++|.|+...+.+ +..+.+- ...++|+-|.+++.. ++++.+
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i-----~~d~~Gr----srGfaFV~F~~~e~A~~Al~~~ 104 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITL-----PVDPEGK----ITGEAFVQFASQELAEKALGKH 104 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTTTSCEEEEEEEC-----CCCSSSS----SCSEEEEEESSTTHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEE-----EECCCCC----CceEEEEEECCHHHHHHHHHHC
Confidence 45678888999999997665 778655223322 1122221 267899999776544 444443
No 9
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=10.16 E-value=3.9e+02 Score=19.02 Aligned_cols=52 Identities=17% Similarity=0.119 Sum_probs=28.3
Q ss_pred cccCCCCCCChhhHHHh-hcCCEEEEEeeecCCCCCCCCCCCCccCcceeEEEEEeehhhHH
Q 012702 139 FMRNGGAEMSPLDVKYV-KKCKFVVASGIFDGYDVPHQPSNISRRSKKLFCFLMVMDEVSLK 199 (458)
Q Consensus 139 F~~~~gf~i~e~d~~~m-~~ckvVVyTaIFG~YD~L~~P~~is~~s~d~VCF~mF~De~t~~ 199 (458)
|+.|-+.++++.|+..+ +++.-| ..+.-+..-.......+||+-|.|....+
T Consensus 3 ~v~nlp~~~t~~~l~~~F~~~G~i---------~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 2mss_A 3 FVGGLSVNTTVEDVKHYFEQFGKV---------DDAMLMFDKTTNRHRGFGFVTFESEDIVE 55 (75)
T ss_dssp EEECCCSSCCHHHHHHHHHTTSCC---------SEECCCBCSSSTTSCBEEEEECSCHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHhcCCE---------EEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 45566678888887654 444321 12222221111123679999998876543
No 10
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=9.99 E-value=31 Score=34.27 Aligned_cols=111 Identities=11% Similarity=0.053 Sum_probs=63.9
Q ss_pred CCCCCChhhHHHhhcC-CEEEEEeeecCCC-CCCCCC-------CCCccCcceeEEEEEeehhhHHHHhhcccccc-CCC
Q 012702 143 GGAEMSPLDVKYVKKC-KFVVASGIFDGYD-VPHQPS-------NISRRSKKLFCFLMVMDEVSLKFIRKNVTIKE-DSA 212 (458)
Q Consensus 143 ~gf~i~e~d~~~m~~c-kvVVyTaIFG~YD-~L~~P~-------~is~~s~d~VCF~mF~De~t~~~l~~~~~~~~-D~~ 212 (458)
+-||.+=-+..|.+.+ +|.+.---+|.|- ...+.= .+-. -.|-|+.|||+. ..+|. ...
T Consensus 32 gtf~~~~l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~g---~~v~YYVFTD~~--------~~~p~v~l~ 100 (289)
T 1o7q_A 32 GTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVG---HPVIFYIMVDDV--------SRMPLIELG 100 (289)
T ss_dssp TSBCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTT---SCEEEEEEESCG--------GGCCCCCCC
T ss_pred CcCCHHHHHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccCC---CeEEEEEEeCCh--------hhCCccccC
Confidence 4466666666777666 7877777789885 221110 1221 357899999943 23332 111
Q ss_pred CCceeeceEEEEcCCC---CCCCccccCCccccccccCCCCCCEEEEEecceEEeeCH
Q 012702 213 GGQWVGIWRLILLKHP---PYDEPRRNGKVPKILTHRLFPQAQYSIWIDGKMELIVDP 267 (458)
Q Consensus 213 ~~~~vg~WrIV~V~~l---py~d~rrngRipKiLpHrLFPny~ySIWIDgkiqL~~DP 267 (458)
.. -.=+|+.|... |+...+|..-+-+...-+++-++||-+.+|+++.+..+.
T Consensus 101 ~~---r~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~v 155 (289)
T 1o7q_A 101 PL---RSFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKF 155 (289)
T ss_dssp TT---EEEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCB
T ss_pred CC---CeEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccC
Confidence 11 11244454432 222334443343444446789999999999999998764
Done!