Query 012703
Match_columns 458
No_of_seqs 75 out of 77
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09737 Det1: De-etiolated pr 100.0 3E-155 7E-160 1190.6 38.2 393 45-458 1-407 (407)
2 KOG2558 Negative regulator of 100.0 4E-122 9E-127 935.3 29.1 430 2-458 78-532 (532)
3 KOG2558 Negative regulator of 98.7 3.2E-09 6.9E-14 110.6 1.4 140 16-158 113-259 (532)
4 PF05935 Arylsulfotrans: Aryls 64.1 33 0.00071 37.2 8.8 109 31-152 179-311 (477)
5 PF02897 Peptidase_S9_N: Proly 51.4 75 0.0016 32.8 8.6 39 47-101 128-166 (414)
6 KOG2111 Uncharacterized conser 49.9 80 0.0017 33.3 8.3 50 85-141 204-258 (346)
7 PRK11028 6-phosphogluconolacto 46.3 94 0.002 30.9 8.2 38 115-152 179-219 (330)
8 PF09783 Vac_ImportDeg: Vacuol 45.6 32 0.00068 33.1 4.4 63 231-293 82-161 (176)
9 PF09826 Beta_propel: Beta pro 41.1 1.3E+02 0.0027 33.4 8.8 64 86-155 32-134 (521)
10 KOG1539 WD repeat protein [Gen 36.2 90 0.0019 36.7 6.8 64 49-137 583-646 (910)
11 PF13360 PQQ_2: PQQ-like domai 29.3 2.5E+02 0.0054 25.9 7.6 22 84-105 131-152 (238)
12 TIGR03866 PQQ_ABC_repeats PQQ- 28.6 4.7E+02 0.01 24.3 9.4 66 86-152 180-249 (300)
13 TIGR03866 PQQ_ABC_repeats PQQ- 27.5 5.1E+02 0.011 24.1 9.4 62 86-154 230-293 (300)
14 PF06433 Me-amine-dh_H: Methyl 21.6 3.8E+02 0.0082 28.5 7.9 106 31-165 80-190 (342)
No 1
>PF09737 Det1: De-etiolated protein 1 Det1; InterPro: IPR019138 This entry represents Det1 family proteins []. Det1 (de-etiolated-1) is an essential negative regulator of plant light responses, and it is a component of the Arabidopsis CDD complex containing DDB1 and COP10 ubiquitin E2 variant. Mammalian Det1 forms stable DDD-E2 complexes, consisting of DDB1, DDA1 (DET1, DDB1 Associated 1), is a member of the UBE2E group of canonical ubiquitin conjugating enzymes and modulates Cul4A function [].
Probab=100.00 E-value=3.2e-155 Score=1190.63 Aligned_cols=393 Identities=51% Similarity=0.833 Sum_probs=368.6
Q ss_pred eeeEEEecCceEEEEEeeccccCCCCC-------CCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceE
Q 012703 45 KDFFLSMEGNQFGLFATSTAQIHDAPT-------TGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVF 117 (458)
Q Consensus 45 refsLft~dgryvivass~~~~~~~~~-------~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~ 117 (458)
||||||||||||||||||+++++++++ |||+++|+|++|+||||||||++|+|||+++|++|+|+||||||||
T Consensus 1 refsLft~dgryvivasat~~~~~~~~~~~d~~~~~eav~~~~~lE~~tfhlVdL~~G~v~D~~~f~~D~I~LsHn~Gv~ 80 (407)
T PF09737_consen 1 REFSLFTEDGRYVIVASATAVPEDPPPRFYDIYRNNEAVSPVPPLEDYTFHLVDLHDGVVCDRRTFKNDKIHLSHNQGVY 80 (407)
T ss_pred CceEEEecCCCEEEEEecccCCCCCCchhhhhhhcCCCcCCCCChhhEEEEEEEccCCcEecceEecCcEEEeccCcceE
Confidence 899999999999999999977777666 9999999999999999999999999999999999999999999999
Q ss_pred eecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhccchhhhcccccCCCCCCCCCCCCCCCCCCCCc
Q 012703 118 LYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDS 197 (458)
Q Consensus 118 L~~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~fc~eDDel~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 197 (458)
||+|||||||+||||||||||+++|+||+||+|||||+||||++++++.++.. . ......+| ++++
T Consensus 81 Ly~dlLaILS~q~QtIhi~qI~~~G~fv~vr~IG~~c~eDDel~l~~~~~~~~-~------------~~~~~~~~-~~~p 146 (407)
T PF09737_consen 81 LYGDLLAILSLQHQTIHIFQIRPDGRFVDVRTIGRFCREDDELFLSSQSQAHE-R------------DQNNLDRP-FREP 146 (407)
T ss_pred EecchHHHHhhhheEEEEEEEcCCCEEEEeEEECCCcCCcHHHHhhccccccc-c------------cccccccc-cccc
Confidence 99999999999999999999999999999999999999999999999876310 0 00112244 5788
Q ss_pred ccchhhHHHHHHHHhcccccccchHHHHHHHHHHHhhhHHHHHHhHhhhhhcccCCeeeEeeecccCccccCC--CCCce
Q 012703 198 FLSGIKQRLLSFIFQGMWNEETDQAMRVQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNV--DHHPA 275 (458)
Q Consensus 198 ~i~giKqRlLsfLyr~a~~~~~~~~~r~~~l~~~Fy~~F~~~~~L~mWKmQlLD~~hLLIk~~s~D~~~~r~~--~~~~s 275 (458)
+||||||||||||||+|+++++++++| +| +||+|||+|++||||||||||++||||||+++|++++|.+ ++|++
T Consensus 147 ~i~~iKqRlLsfLyr~~~~~~~~~~~~---~r-~Fy~~F~~~~~L~MWKmQlLD~~hLLIky~s~D~~~~r~~d~~~~~s 222 (407)
T PF09737_consen 147 FINGIKQRLLSFLYRRAWRESSDPADR---LR-RFYFNFDQYRSLRMWKMQLLDEDHLLIKYGSEDVVTLRVSDPNSQPS 222 (407)
T ss_pred cccchhHHhHHHHHhhhhhcCCcchhh---HH-HHHHHHHHHHHHHhhhhhhcchhheeeeeccccceeeccCCCCCCce
Confidence 999999999999999999877777444 56 9999999999999999999999999999999999999965 45999
Q ss_pred EEEEEEeecceEEEEEeCChHHHHHHHHHhhccCCCCCCCCcccccccCCCccHHHHHHhh-----hhccCCCchHHHHH
Q 012703 276 FFAVYNMETTEVVAFYQNSAEELYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLR-----SIKNKGGSFSQFVK 350 (458)
Q Consensus 276 ~fvvYn~~t~eVl~vyen~S~eLl~l~E~f~d~f~~~~~~~~~~~f~~s~s~n~~ar~~~~-----~~~ak~g~~~ea~k 350 (458)
|||||||+||||||||||+|+|||+|||||||+|||+++++.+ +|+||+|||.|||++++ +++||+||.+||+|
T Consensus 223 ffvvYn~~t~eV~~vyen~S~eLl~l~e~f~d~f~~~~~~~~~-~f~~s~s~n~~a~~~~~~~k~~~~~a~~~~~~ea~k 301 (407)
T PF09737_consen 223 FFVVYNMETTEVLGVYENSSEELLKLFEQFCDHFRNAPLNSPN-NFRSSPSNNIYARPQHRRFKQTIVNARYGGHTEAVK 301 (407)
T ss_pred EEEEEeeccceEEEEEcCChHHHHHHHHHHHHHhhcccccccc-CCccCCCCChhhhHHHHHHHHHHhhcccccHHHHHH
Confidence 9999999999999999999999999999999999999999886 99999999999999987 46889999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCeeeEecCCCCeeeEEEeCCCCCCCCCCccceeEEEe
Q 012703 351 KMMASLPFGCQSQSPSPYFDQSLFRYDEKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFL 430 (458)
Q Consensus 351 R~l~~lP~s~Qs~S~SPYLD~sLFsYDdk~IS~~eRpk~~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~ 430 (458)
|||++||+|+||+|+|||||++||||||||||+|||||+|+|+|||||+|++ |+|||||++|+.++++++++||+||||
T Consensus 302 Rll~~lP~s~Qs~s~SPYlD~~LFsYDdk~IS~~eRpk~~~~~PIrF~sR~~-~~lkFki~~g~~~~~~~~~~rr~vaf~ 380 (407)
T PF09737_consen 302 RLLAQLPISAQSYSSSPYLDLSLFSYDDKWISAIERPKPCGDHPIRFYSRDS-GLLKFKINAGARRGAAPSAARRLVAFT 380 (407)
T ss_pred HHHhhCCCCccccCCCcCcCchhcccccceecccccCCCCCCCCcEEEeecC-CeEEEEEecCCcCCCCCcCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999998 999999999999999999999999999
Q ss_pred ecCCCceEEEEEeecccCCeeEEEeecC
Q 012703 431 FHPFLPLALSIQQTLFLQPSVVNIHFRR 458 (458)
Q Consensus 431 FHP~~PFaiSvq~~~f~~~~vvnfH~r~ 458 (458)
|||++||||||||+ ||++||||||+|+
T Consensus 381 FHP~~PFaiSvq~~-~~~~~vvnfh~r~ 407 (407)
T PF09737_consen 381 FHPFEPFAISVQRT-FNQEYVVNFHFRH 407 (407)
T ss_pred cCCCCCeEEEEEee-cCCCcEEEEEecC
Confidence 99999999999999 9999999999997
No 2
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=100.00 E-value=4.1e-122 Score=935.26 Aligned_cols=430 Identities=27% Similarity=0.324 Sum_probs=384.0
Q ss_pred CccccccccccCC-CCCCcccchh------------hhhcceeEEEEccCCCeeeeeeeEEEecCceEEEEEeeccccCC
Q 012703 2 WLSFSCKEEDCCR-HDLPPKAKRF------------ESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHD 68 (458)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~r~~~F------------~~~F~~~~~~~l~~~~e~L~refsLft~dgryvivass~~~~~~ 68 (458)
|.++|...++..+ ++.+.+.+-| +++|++.+..+++..++.++++|+++|.+++.++++++. ..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~D~~s~~~~s~~~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~-~~p~ 156 (532)
T KOG2558|consen 78 QRSLLIYSYGGSSCAAVGELIRQADVGSGECFSSQDTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLE-EGRY 156 (532)
T ss_pred hhcceeeccCCccccchhhhhhcccccceEEeehhHHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhh-hCCC
Confidence 7888887776655 5555555544 445555555666777788999999999999999998887 4554
Q ss_pred CC--------CCCCCCCC--CCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeeecccEEEEEEE
Q 012703 69 AP--------TTGRAIQG--VPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQV 138 (458)
Q Consensus 69 ~~--------~~~~av~~--~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI 138 (458)
++ .+.+.+.+ .|+|+++ +++++.|+.||.+.|++|+..|+||+|++++++.++|++++. |++++
T Consensus 157 ~p~~~~~~v~~~~~~d~~v~~~~lfd~---~~a~~~g~fl~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~---~v~~~ 230 (532)
T KOG2558|consen 157 AMLAAMTVVRGALPVDDYVRYPDLFDK---VDAFSYVFFLVDLKLGVVTDRLILPNDSIVIAHNHGISVFGS---TVMMM 230 (532)
T ss_pred CCCCceEEEEeccccCCcccCchHHhh---hhhheeeEEEecceeeeeEEEEecccccEEEecCceeeeeeh---hhhhc
Confidence 54 12333333 5589998 999999999999999999999999999999999999999985 99999
Q ss_pred ccCCeEEEeeeeCCccCcchHHHHhhccchhhhcccccCCCCCCCCCCCCCCCCCCCCcccchhhHHHHHHHHhcccccc
Q 012703 139 RDLGNLVDVRTIGSFCREDDELFLISNSQSLATSERSRLNPFPGNQVGNGHNQVNQDDSFLSGIKQRLLSFIFQGMWNEE 218 (458)
Q Consensus 139 ~~~G~fv~vr~IG~fc~eDDel~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~giKqRlLsfLyr~a~~~~ 218 (458)
...|+++.|++||++|+++|++..++..... ++..+.+.++|..++++||||||||||||||+||+++
T Consensus 231 ~~~~~~v~v~~v~~~k~~qq~l~gs~~~d~~------------e~~~~~~~~~p~~~~~fi~~iKqRlLsfl~R~i~~~~ 298 (532)
T KOG2558|consen 231 SRLHQCVYVYWVNDGKFHQQETIGPRPRDFI------------EKATTDFDNLPATTVLFITHIKQRLLSFLYRKINDKS 298 (532)
T ss_pred ccccceeEEEEecCCchhhhhccCCCCCchh------------hhcccccccCCccccchhhHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999988776654322 1223456678866699999999999999999999888
Q ss_pred cchHHHHHHHHHHHhhhHHHHHHhHhhhhhcccCCeeeEeeecccCccccCCC-CCceEEEEEEeecceEEEEEeCChHH
Q 012703 219 TDQAMRVQSLKKKFFFHFQDYVDLIIWKVQFLDRHHLLIKFGSVDGGVSRNVD-HHPAFFAVYNMETTEVVAFYQNSAEE 297 (458)
Q Consensus 219 ~~~~~r~~~l~~~Fy~~F~~~~~L~mWKmQlLD~~hLLIk~~s~D~~~~r~~~-~~~s~fvvYn~~t~eVl~vyen~S~e 297 (458)
+++ +.+||+||+|||+|++||||||||||++||+|||+|+||++.|..| ++++|||||||+||||||||+|+|++
T Consensus 299 s~~----~~~kk~Fy~~F~~~~~limwKmqlld~~hL~IKy~s~dg~~tr~~d~s~~~ffvvYnm~tteVVavy~n~s~~ 374 (532)
T KOG2558|consen 299 SNP----TESKKSFYKNFEYIEHLIMWKMQLLDNEHLMIKYESPDGTDTRPMDTSPRRFFVVYNMTTTEVVAVYPNYSVN 374 (532)
T ss_pred CCh----HHHHHHHHHHHHHHHHHHHHHHHhcccceeEEEeeCCCCcccccCCCCCccEEEEEEcceeEEEEEcccchHH
Confidence 887 5677799999999999999999999999999999999999999887 79999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCcccccccCCCccHHHHHHhhhhccCCCchHHHHHHHhccCCCCCCCCCCCCCCCCCCCccc
Q 012703 298 LYFLFEKFCDHFHATSRNSLHMNFISSHSNNVYALEQLRSIKNKGGSFSQFVKKMMASLPFGCQSQSPSPYFDQSLFRYD 377 (458)
Q Consensus 298 Ll~l~E~f~d~f~~~~~~~~~~~f~~s~s~n~~ar~~~~~~~ak~g~~~ea~kR~l~~lP~s~Qs~S~SPYLD~sLFsYD 377 (458)
||+|||||||+|+|++..+ .++||||||+|.||+++++..++|+||++|+|||+|.|||+||||+|+|||||+|||+||
T Consensus 375 LlqLfeqF~D~f~n~~s~~-f~~fp~s~s~n~~a~~~~~~~k~K~~~~~~~v~r~l~slP~S~QS~S~SPYld~slFryD 453 (532)
T KOG2558|consen 375 LLQLFEQFNDYFSNDRSLQ-FGDFPSSPSHNFLAHTFADSNKSKVSVDRHTVLRFLPSLPLSSQSLSSSPYLDFSLFRYD 453 (532)
T ss_pred HHHHHHHHHHhhccccccc-cccCcccccccHHHHHHHHhhhccccchHHHHHHhccCCCcccccCCCCccccchhhccc
Confidence 9999999999999999544 699999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCeeeEecCCCCeeeEEEeCCCCCCCCCCccceeEEEeecCCCceEEEEEeeccc-CCeeEEEee
Q 012703 378 EKLISATDRHRQSTDHPIKFISRRPPYTLKFKIKPGPEAGTIDGRTKRISSFLFHPFLPLALSIQQTLFL-QPSVVNIHF 456 (458)
Q Consensus 378 dk~IS~~eRpk~~~e~PIrF~sR~~p~~lkFki~~g~~~~~~~~~~rr~vaf~FHP~~PFaiSvq~~~f~-~~~vvnfH~ 456 (458)
|||||++||||.|+|+||||++|++ ++|||||+||++++++++++||+|||||||++||||||||| | .+||||||+
T Consensus 454 ~K~VS~~erp~~c~d~PI~F~~R~~-~~LKF~I~ag~~~~~~~~~~r~lcaF~fHPf~PlaISIQ~t--~~p~yVvn~H~ 530 (532)
T KOG2558|consen 454 SKYVSPLERPHRCCDDPIVFLDRAT-DSLKFRIHAGARRHLNPLAPRELCAFIFHPFDPLAISIQKT--MNPSYVVNVHL 530 (532)
T ss_pred chhcChhhcccccCCCCeEEEecCC-CceEEEEecccccCCCCCChhheeeEeccCCCceeeeeecc--cCCceEEEEEe
Confidence 9999999999999999999999999 79999999999999999999999999999999999999999 6 799999999
Q ss_pred cC
Q 012703 457 RR 458 (458)
Q Consensus 457 r~ 458 (458)
|+
T Consensus 531 r~ 532 (532)
T KOG2558|consen 531 RN 532 (532)
T ss_pred cC
Confidence 97
No 3
>KOG2558 consensus Negative regulator of histones [Transcription]
Probab=98.72 E-value=3.2e-09 Score=110.61 Aligned_cols=140 Identities=25% Similarity=0.353 Sum_probs=120.1
Q ss_pred CCCcccchhhhhcceeEEEEccCCC---eeeeeeeEEEecCceEEEEEeeccccCCCCC---C-CCCCCCCCCcceeEEE
Q 012703 16 DLPPKAKRFESFFTQLYSVTLASCN---ELICKDFFLSMEGNQFGLFATSTAQIHDAPT---T-GRAIQGVPFIEKITFH 88 (458)
Q Consensus 16 ~~~~r~~~F~~~F~~~~~~~l~~~~---e~L~refsLft~dgryvivass~~~~~~~~~---~-~~av~~~p~le~ytfh 88 (458)
+..++++||+++|-.+-+.+++.++ ++|+++++.+.+-|+|+..+.++...+..+. + .+.+-..-.-.+|.+.
T Consensus 113 ~~~~~~li~~~~f~~~~t~~~~~~~~~t~~~h~~~s~s~~~~p~~p~~~~~~v~~~~~~d~~v~~~~lfd~~~a~~~g~f 192 (532)
T KOG2558|consen 113 DTILKSRIFERLFPTKETLNLCQGDFGLYYLHREFSVFLEEGRYAMLAAMTVVRGALPVDDYVRYPDLFDKVDAFSYVFF 192 (532)
T ss_pred HHHHHHHHHHHhcccchhhhccccccchhhhhhhccchhhhCCCCCCCceEEEEeccccCCcccCchHHhhhhhheeeEE
Confidence 5578999999999999999999975 9999999999999999999988866653331 1 1222222133689999
Q ss_pred EEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcch
Q 012703 89 LLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDD 158 (458)
Q Consensus 89 lVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~fc~eDD 158 (458)
|+|+.-|+++|+....+|.|..+||+||..++.....+|..+|+|+++.|.+ |++.++.+||+ .++|
T Consensus 193 l~d~~l~~~~~rl~~~~~l~v~~~~h~I~~~~~~v~~~~~~~~~v~v~~v~~-~k~~qq~l~gs--~~~d 259 (532)
T KOG2558|consen 193 LVDLKLGVVTDRLILPNDSIVIAHNHGISVFGSTVMMMSRLHQCVYVYWVND-GKFHQQETIGP--RPRD 259 (532)
T ss_pred EecceeeeeEEEEecccccEEEecCceeeeeehhhhhcccccceeEEEEecC-CchhhhhccCC--CCCc
Confidence 9999999999999999999999999999999999999999999999999995 99999999999 4555
No 4
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=64.10 E-value=33 Score=37.20 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=59.1
Q ss_pred eEEEEccCCCeeeeeeeEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeecc-----
Q 012703 31 LYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN----- 105 (458)
Q Consensus 31 ~~~~~l~~~~e~L~refsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~----- 105 (458)
.+...++.+...+|-|+. .++||.++++++.+.... + . ...-.++|. +..|| .+|+|...-.+..
T Consensus 179 ~~~~~l~~~~~~~HHD~~-~l~nGn~L~l~~~~~~~~-~---~---~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~ 248 (477)
T PF05935_consen 179 IWEYDLPGGYYDFHHDID-ELPNGNLLILASETKYVD-E---D---KDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPY 248 (477)
T ss_dssp EEEEE--TTEE-B-S-EE-E-TTS-EEEEEEETTEE--T---S----EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT
T ss_pred EEeeecCCcccccccccE-ECCCCCEEEEEeeccccc-C---C---CCccEecCE-EEEEC-CCCCEEEEEehHHhCCcc
Confidence 344555555567888876 678999999987663332 1 1 122246776 78888 9999887765543
Q ss_pred -----------------ceEEeecccceEeec-ceeeeeeeccc-EEEEEEEccCCeEEEeeeeCC
Q 012703 106 -----------------DFINLAHNMGVFLYD-DLLAIVSLRYQ-TIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 106 -----------------D~I~LsHN~Gv~L~~-dlLAILS~q~Q-tIhi~qI~~~G~fv~vr~IG~ 152 (458)
....+.|..+|..-. |=-.|+|.||| +|-+..- .+|+.+- .+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~-~t~~i~W--ilg~ 311 (477)
T PF05935_consen 249 RDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY-RTGKIKW--ILGP 311 (477)
T ss_dssp --TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE--TTS-EEE--EES-
T ss_pred cccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC-CCCcEEE--EeCC
Confidence 233456888887766 66678999999 7766663 3565432 4565
No 5
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=51.41 E-value=75 Score=32.80 Aligned_cols=39 Identities=21% Similarity=0.133 Sum_probs=26.2
Q ss_pred eEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeee
Q 012703 47 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 101 (458)
Q Consensus 47 fsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~ 101 (458)
.+-+.+||+++.++-+. . | =|.|+++++|+++|..+...
T Consensus 128 ~~~~Spdg~~la~~~s~--~-------G-------~e~~~l~v~Dl~tg~~l~d~ 166 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSD--G-------G-------SEWYTLRVFDLETGKFLPDG 166 (414)
T ss_dssp EEEETTTSSEEEEEEEE--T-------T-------SSEEEEEEEETTTTEEEEEE
T ss_pred eeeECCCCCEEEEEecC--C-------C-------CceEEEEEEECCCCcCcCCc
Confidence 34455677777775333 1 1 27899999999999876543
No 6
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=49.86 E-value=80 Score=33.32 Aligned_cols=50 Identities=32% Similarity=0.438 Sum_probs=36.7
Q ss_pred eEEEEEEcCCCeEeeeeeeccc-----eEEeecccceEeecceeeeeeecccEEEEEEEccC
Q 012703 85 ITFHLLRLEDGVVLDEKVFHND-----FINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDL 141 (458)
Q Consensus 85 ytfhlVdL~~G~v~D~~~f~~D-----~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~ 141 (458)
.-+-|.|.++|.+.-+..==.| .|..||| ...|||.| .++|+|||.+.+.
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~------~s~LavsS-dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN------SSWLAVSS-DKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC------ccEEEEEc-CCCeEEEEEeecC
Confidence 4567889999988777544444 3666776 46788877 5599999999873
No 7
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=46.29 E-value=94 Score=30.86 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.4
Q ss_pred ceEeecc--eeeeeeecccEEEEEEEcc-CCeEEEeeeeCC
Q 012703 115 GVFLYDD--LLAIVSLRYQTIHILQVRD-LGNLVDVRTIGS 152 (458)
Q Consensus 115 Gv~L~~d--lLAILS~q~QtIhi~qI~~-~G~fv~vr~IG~ 152 (458)
++.+..| .|.|.+....+|.+|.+.+ .|.+..+.+++.
T Consensus 179 ~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 179 HMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred eEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 5566666 7888888889999999975 578877777764
No 8
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=45.64 E-value=32 Score=33.06 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHhhhHHHHHHhHhhhhh-----------cccCCeeeEeeecccCccc-cC-----CCCCceEEEEEEeecceEEEEEeC
Q 012703 231 KFFFHFQDYVDLIIWKVQ-----------FLDRHHLLIKFGSVDGGVS-RN-----VDHHPAFFAVYNMETTEVVAFYQN 293 (458)
Q Consensus 231 ~Fy~~F~~~~~L~mWKmQ-----------lLD~~hLLIk~~s~D~~~~-r~-----~~~~~s~fvvYn~~t~eVl~vyen 293 (458)
+.|+.|..|+.|..=.+. +++.++++.|+-+.=-|.- |. +.-..=+|+++|..+|+|-|.|=.
T Consensus 82 ~hW~kf~~f~~~~~~~~~~~~~~~~~~~~~~~~~~IfMRWKE~Flvpd~~~~~i~GaSf~GFYYI~~~~~~G~I~G~Yyh 161 (176)
T PF09783_consen 82 EHWSKFPPFRPLSKDENLQKLSDDFDYEDLLNQRYIFMRWKERFLVPDHRVKSISGASFEGFYYICLDRSTGSIEGYYYH 161 (176)
T ss_pred HHHhcCCcchhhhhhhccccccCCccchhhcCCCcEEEEEEeEEEcccccCCCcCceeEeeEEEEEEEccCCeEEEEEEC
Confidence 578888888887776665 7788999999977622211 11 112457899999999999999943
No 9
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=41.07 E-value=1.3e+02 Score=33.44 Aligned_cols=64 Identities=20% Similarity=0.395 Sum_probs=48.4
Q ss_pred EEEEEEc---CCCeEeeeeeeccceEEeecccceEeecceeeeeeecc------------------------cEEEEEEE
Q 012703 86 TFHLLRL---EDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRY------------------------QTIHILQV 138 (458)
Q Consensus 86 tfhlVdL---~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~------------------------QtIhi~qI 138 (458)
.+++||. ++-++..+..+... -+++||.+|.|.|++-.+ =.|.+|.|
T Consensus 32 ~l~Iida~p~~~~~~~s~I~~~~~------~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~vYDI 105 (521)
T PF09826_consen 32 RLYIIDAYPAEEMKVVSRIDLDGS------PQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSSTKITVYDI 105 (521)
T ss_pred EEEEEECCCchhceEEEEEecCCC------hhheEEcCCEEEEEEeccccccccccccccccccccccCCceeEEEEEEC
Confidence 4677777 56677778777777 469999999999999443 25788877
Q ss_pred cc------------CCeEEEeeeeCCccC
Q 012703 139 RD------------LGNLVDVRTIGSFCR 155 (458)
Q Consensus 139 ~~------------~G~fv~vr~IG~fc~ 155 (458)
.+ +|.++.-|.||-.-+
T Consensus 106 sD~~~P~~~~~~~~~G~yvsSR~ig~~vy 134 (521)
T PF09826_consen 106 SDPSNPKLLREIEIEGSYVSSRKIGDYVY 134 (521)
T ss_pred CCCCCceEEEEEEeeeEEEeEEEECCEEE
Confidence 42 588999999997655
No 10
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=36.23 E-value=90 Score=36.67 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=49.6
Q ss_pred EEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeee
Q 012703 49 LSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSL 128 (458)
Q Consensus 49 Lft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~ 128 (458)
=|-+|||.+|.|++- =|+-++||-+|.+.|-..+.+-.+.|+-+ ==+|.||...+
T Consensus 583 ~FS~DgrWlisasmD---------------------~tIr~wDlpt~~lID~~~vd~~~~sls~S----PngD~LAT~Hv 637 (910)
T KOG1539|consen 583 TFSPDGRWLISASMD---------------------STIRTWDLPTGTLIDGLLVDSPCTSLSFS----PNGDFLATVHV 637 (910)
T ss_pred EeCCCCcEEEEeecC---------------------CcEEEEeccCcceeeeEecCCcceeeEEC----CCCCEEEEEEe
Confidence 366888888887653 35889999999999999998888777632 23688888888
Q ss_pred cccEEEEEE
Q 012703 129 RYQTIHILQ 137 (458)
Q Consensus 129 q~QtIhi~q 137 (458)
-+=-||++-
T Consensus 638 d~~gIylWs 646 (910)
T KOG1539|consen 638 DQNGIYLWS 646 (910)
T ss_pred cCceEEEEE
Confidence 877777754
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=29.26 E-value=2.5e+02 Score=25.86 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=18.1
Q ss_pred eeEEEEEEcCCCeEeeeeeecc
Q 012703 84 KITFHLLRLEDGVVLDEKVFHN 105 (458)
Q Consensus 84 ~ytfhlVdL~~G~v~D~~~f~~ 105 (458)
+-.++.+|+++|.+.-++....
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp CSEEEEEETTTTEEEEEEESST
T ss_pred cCcEEEEecCCCcEEEEeecCC
Confidence 6779999999999977777644
No 12
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=28.58 E-value=4.7e+02 Score=24.34 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=35.4
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEe--ecccceEee--cceeeeeeecccEEEEEEEccCCeEEEeeeeCC
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINL--AHNMGVFLY--DDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~L--sHN~Gv~L~--~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~ 152 (458)
+++++|+++|.+..+..++..-+.. ....|+.+- +..+.+..---.+|+++.+. +|+.+..-..|.
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~ 249 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK-TYEVLDYLLVGQ 249 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC-CCcEEEEEEeCC
Confidence 5889999999887776665321110 011233322 22222222223578888876 577765444453
No 13
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=27.45 E-value=5.1e+02 Score=24.09 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=37.8
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeec--ceeeeeeecccEEEEEEEccCCeEEEeeeeCCcc
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYD--DLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFC 154 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~--dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~fc 154 (458)
+++++|+++|++........ .+ .++.... ..|++-+-...+|.|+.+. +|+.+..-.+|.-+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~-~~-----~~~~~~~~g~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ-RV-----WQLAFTPDEKYLLTTNGVSNDVSVIDVA-ALKVIKSIKVGRLP 293 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC-Cc-----ceEEECCCCCEEEEEcCCCCeEEEEECC-CCcEEEEEEccccc
Confidence 68899999998865432111 11 1233322 3444444446789999988 48887777788633
No 14
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=21.64 E-value=3.8e+02 Score=28.54 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred eEEEEccCC-C--eeeeeeeEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeec-cc
Q 012703 31 LYSVTLASC-N--ELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFH-ND 106 (458)
Q Consensus 31 ~~~~~l~~~-~--e~L~refsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~-~D 106 (458)
+..+.++.. . -...+--.-++.||||++|.-+|+. -+..+|||+.+++..+.... |=
T Consensus 80 ~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-------------------~SVtVVDl~~~kvv~ei~~PGC~ 140 (342)
T PF06433_consen 80 TGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-------------------TSVTVVDLAAKKVVGEIDTPGCW 140 (342)
T ss_dssp EEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS-------------------EEEEEEETTTTEEEEEEEGTSEE
T ss_pred cceEecCCcchheecccccceEEccCCcEEEEEccCCC-------------------CeEEEEECCCCceeeeecCCCEE
Confidence 455666654 2 1233445566789999999988832 24789999999998887765 44
Q ss_pred eEEeecccceEee-cceeeeeeecccEEEEEEEccCCeEEEeeeeCCccCcchHHHHhhc
Q 012703 107 FINLAHNMGVFLY-DDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGSFCREDDELFLISN 165 (458)
Q Consensus 107 ~I~LsHN~Gv~L~-~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~fc~eDDel~l~~~ 165 (458)
-|+-+-|+|.+.. +| =++++ +.+.++|+....++ --|=.+||.++....
T Consensus 141 ~iyP~~~~~F~~lC~D-Gsl~~--------v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~ 190 (342)
T PF06433_consen 141 LIYPSGNRGFSMLCGD-GSLLT--------VTLDADGKEAQKST-KVFDPDDDPLFEHPA 190 (342)
T ss_dssp EEEEEETTEEEEEETT-SCEEE--------EEETSTSSEEEEEE-EESSTTTS-B-S--E
T ss_pred EEEecCCCceEEEecC-CceEE--------EEECCCCCEeEeec-cccCCCCcccccccc
Confidence 4555666665533 22 12222 24566898873333 355556777776654
Done!