Query 012703
Match_columns 458
No_of_seqs 75 out of 77
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iwa_A Glutamine cyclotransfer 61.5 8.9 0.0003 37.0 5.1 73 86-163 45-122 (266)
2 3scy_A Hypothetical bacterial 52.7 1E+02 0.0035 28.5 10.7 60 85-150 233-302 (361)
3 3vgz_A Uncharacterized protein 46.0 84 0.0029 28.4 8.8 83 48-151 46-130 (353)
4 2vdu_B TRNA (guanine-N(7)-)-me 45.0 1E+02 0.0035 29.8 9.8 69 83-151 260-352 (450)
5 3hfq_A Uncharacterized protein 43.5 1.7E+02 0.006 26.6 10.7 30 121-150 252-281 (347)
6 3scy_A Hypothetical bacterial 41.2 2.1E+02 0.0071 26.3 10.9 79 52-150 11-95 (361)
7 1l0q_A Surface layer protein; 41.1 1.3E+02 0.0046 27.7 9.5 76 47-149 36-113 (391)
8 3u4y_A Uncharacterized protein 40.8 33 0.0011 31.1 5.2 58 83-140 241-304 (331)
9 3mbr_X Glutamine cyclotransfer 40.4 73 0.0025 30.3 7.7 61 86-151 44-104 (243)
10 1l0q_A Surface layer protein; 37.2 2.1E+02 0.0073 26.3 10.3 61 84-151 95-157 (391)
11 1nir_A Nitrite reductase; hemo 34.4 1.3E+02 0.0046 30.8 9.1 19 275-293 505-523 (543)
12 1pby_B Quinohemoprotein amine 33.4 2.5E+02 0.0087 24.8 10.2 84 48-152 39-135 (337)
13 3u4y_A Uncharacterized protein 33.3 1.2E+02 0.0039 27.4 7.6 56 86-147 109-167 (331)
14 3nol_A Glutamine cyclotransfer 29.8 1.1E+02 0.0039 29.4 7.1 61 86-151 66-126 (262)
15 3vgz_A Uncharacterized protein 28.2 3.2E+02 0.011 24.4 12.0 60 85-152 253-314 (353)
16 1jof_A Carboxy-CIS,CIS-muconat 27.1 3.4E+02 0.012 25.3 9.9 63 86-150 120-186 (365)
17 3elq_A Arylsulfate sulfotransf 27.0 1.7E+02 0.0059 31.4 8.6 73 22-103 229-301 (571)
18 3qqz_A Putative uncharacterize 21.1 2.4E+02 0.0082 26.6 7.5 61 86-151 50-111 (255)
19 2xdp_A Lysine-specific demethy 20.9 1.1E+02 0.0036 26.7 4.5 65 81-147 29-106 (123)
No 1
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=61.48 E-value=8.9 Score=36.98 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=52.9
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeeecccEEEEEEEccCCeEEEeeeeC-----CccCcchHH
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG-----SFCREDDEL 160 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG-----~fc~eDDel 160 (458)
+++.||+++|++..+..+... .+-.|+.+.++.|-++.-+..+|.++... .++.+..=+.| ..|+++..+
T Consensus 45 ~v~~iD~~tg~v~~~i~l~~~----~fgeGi~~~g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g~~~g~glt~Dg~~l 119 (266)
T 2iwa_A 45 SVRQVALQTGKVENIHKMDDS----YFGEGLTLLNEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQMKDGWGLATDGKIL 119 (266)
T ss_dssp EEEEEETTTCCEEEEEECCTT----CCEEEEEEETTEEEEEETTCSEEEEEETT-TTEEEEEEECCSSSCCEEEECSSSE
T ss_pred EEEEEECCCCCEEEEEecCCC----cceEEEEEeCCEEEEEEecCCEEEEEECC-CCcEEEEEECCCCCeEEEEECCCEE
Confidence 599999999999988776431 23358999999999999999999998865 46665544446 234444444
Q ss_pred HHh
Q 012703 161 FLI 163 (458)
Q Consensus 161 ~l~ 163 (458)
+++
T Consensus 120 ~vs 122 (266)
T 2iwa_A 120 YGS 122 (266)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 2
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=52.73 E-value=1e+02 Score=28.52 Aligned_cols=60 Identities=22% Similarity=0.218 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCeEeeeeeeccc--------eEEeecccceEeecceeeeeeec-ccEEEEEEEc-cCCeEEEeeee
Q 012703 85 ITFHLLRLEDGVVLDEKVFHND--------FINLAHNMGVFLYDDLLAIVSLR-YQTIHILQVR-DLGNLVDVRTI 150 (458)
Q Consensus 85 ytfhlVdL~~G~v~D~~~f~~D--------~I~LsHN~Gv~L~~dlLAILS~q-~QtIhi~qI~-~~G~fv~vr~I 150 (458)
=++.++|+.+|.+.-...+... -|.++.+ +..|++.... ..+|.||.+. .+|++..+..+
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd------g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD------GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT------SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC------CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe
Confidence 4578889989876433333221 3444433 2345555555 6899999996 46887666654
No 3
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=46.01 E-value=84 Score=28.40 Aligned_cols=83 Identities=10% Similarity=-0.025 Sum_probs=51.3
Q ss_pred EEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEeec--ceeee
Q 012703 48 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYD--DLLAI 125 (458)
Q Consensus 48 sLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~--dlLAI 125 (458)
.-+..||+++.++++.. .+.-.+-+++++|+++|.+..+...... -.|+.+-. ..|.|
T Consensus 46 ~~~s~dg~~l~~~~~~~--------------~~~~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 46 MAYSQQENALWLATSQS--------------RKLDKGGVVYRLDPVTLEVTQAIHNDLK------PFGATINNTTQTLWF 105 (353)
T ss_dssp EEEETTTTEEEEEECCC--------------TTTEESEEEEEECTTTCCEEEEEEESSC------CCSEEEETTTTEEEE
T ss_pred eEECCCCCEEEEEcCCC--------------cCCCCCccEEEEcCCCCeEEEEEecCCC------cceEEECCCCCEEEE
Confidence 34667888887765441 1223456899999999998776654322 12333333 45666
Q ss_pred eeecccEEEEEEEccCCeEEEeeeeC
Q 012703 126 VSLRYQTIHILQVRDLGNLVDVRTIG 151 (458)
Q Consensus 126 LS~q~QtIhi~qI~~~G~fv~vr~IG 151 (458)
.+-..-+|+++.+. +|+.+..-..|
T Consensus 106 ~~~~~~~v~~~d~~-~~~~~~~~~~~ 130 (353)
T 3vgz_A 106 GNTVNSAVTAIDAK-TGEVKGRLVLD 130 (353)
T ss_dssp EETTTTEEEEEETT-TCCEEEEEESC
T ss_pred EecCCCEEEEEeCC-CCeeEEEEecC
Confidence 66666688888766 47766554543
No 4
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=45.01 E-value=1e+02 Score=29.78 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=41.6
Q ss_pred ceeEEEEEEcCCCeEeeeeeecc---ceEEeec--------------c---cceEee--cceeeeeeecccEEEEEEE--
Q 012703 83 EKITFHLLRLEDGVVLDEKVFHN---DFINLAH--------------N---MGVFLY--DDLLAIVSLRYQTIHILQV-- 138 (458)
Q Consensus 83 e~ytfhlVdL~~G~v~D~~~f~~---D~I~LsH--------------N---~Gv~L~--~dlLAILS~q~QtIhi~qI-- 138 (458)
.+-++.|+|+.+|.......... ......| . .+|... +..|++-+-...+|+||.+
T Consensus 260 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~ 339 (450)
T 2vdu_B 260 GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE 339 (450)
T ss_dssp SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence 34589999999998776655331 0000001 0 022222 5567777657899999999
Q ss_pred ccCCeEEEeeeeC
Q 012703 139 RDLGNLVDVRTIG 151 (458)
Q Consensus 139 ~~~G~fv~vr~IG 151 (458)
...|++..+.+|.
T Consensus 340 ~~~~~l~~~~~~~ 352 (450)
T 2vdu_B 340 KQKGDLALKQIIT 352 (450)
T ss_dssp SSTTCEEEEEEEE
T ss_pred CCCCceeeccEec
Confidence 5456666666553
No 5
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=43.48 E-value=1.7e+02 Score=26.61 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=22.1
Q ss_pred ceeeeeeecccEEEEEEEccCCeEEEeeee
Q 012703 121 DLLAIVSLRYQTIHILQVRDLGNLVDVRTI 150 (458)
Q Consensus 121 dlLAILS~q~QtIhi~qI~~~G~fv~vr~I 150 (458)
..|.|.+....+|.+|.+.++|.+..+.++
T Consensus 252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 281 (347)
T 3hfq_A 252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQI 281 (347)
T ss_dssp CEEEEEEETTTEEEEEEECGGGCEEEEEEE
T ss_pred CEEEEEeCCCCEEEEEEECCCCcEEEeEEE
Confidence 456666777889999999877876666554
No 6
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=41.23 E-value=2.1e+02 Score=26.33 Aligned_cols=79 Identities=15% Similarity=0.031 Sum_probs=49.3
Q ss_pred cCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceeeeeee-
Q 012703 52 EGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSL- 128 (458)
Q Consensus 52 ~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~- 128 (458)
.+..+++|+|.+. + .=+.+.++.+|.++|.+.....+. ...-.++.+- +..|++.+-
T Consensus 11 ~~~~~~~vg~y~~--~-------------~~~~i~~~~~d~~~g~~~~~~~~~-----~~~p~~l~~spdg~~l~~~~~~ 70 (361)
T 3scy_A 11 DSELTMLVGTYTS--G-------------NSKGIYTFRFNEETGESLPLSDAE-----VANPSYLIPSADGKFVYSVNEF 70 (361)
T ss_dssp GGEEEEEEEECCS--S-------------SCCEEEEEEEETTTCCEEEEEEEE-----CSCCCSEEECTTSSEEEEEECC
T ss_pred CCceEEEEEeccC--C-------------CCCCEEEEEEeCCCCCEEEeeccc-----CCCCceEEECCCCCEEEEEEcc
Confidence 3456777776652 1 124566777788999887665552 2222333333 356777776
Q ss_pred --cccEEEEEEEccC-CeEEEeeee
Q 012703 129 --RYQTIHILQVRDL-GNLVDVRTI 150 (458)
Q Consensus 129 --q~QtIhi~qI~~~-G~fv~vr~I 150 (458)
...+|.+|.+..+ |++..+.++
T Consensus 71 ~~~~~~v~~~~~~~~~g~~~~~~~~ 95 (361)
T 3scy_A 71 SKDQAAVSAFAFDKEKGTLHLLNTQ 95 (361)
T ss_dssp SSTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCCCcEEEEEEeCCCCcEEEeeEe
Confidence 3579999999765 887776654
No 7
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=41.09 E-value=1.3e+02 Score=27.72 Aligned_cols=76 Identities=7% Similarity=0.017 Sum_probs=47.3
Q ss_pred eEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceee
Q 012703 47 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLA 124 (458)
Q Consensus 47 fsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLA 124 (458)
+.-|..||+++++++.. +=++.++|+.+|.+..........- ++.+. +..|+
T Consensus 36 ~~~~s~dg~~l~~~~~~--------------------d~~i~v~d~~~~~~~~~~~~~~~v~------~~~~spdg~~l~ 89 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAH--------------------SNDVSIIDTATNNVIATVPAGSSPQ------GVAVSPDGKQVY 89 (391)
T ss_dssp EEEECTTSSEEEEEEGG--------------------GTEEEEEETTTTEEEEEEECSSSEE------EEEECTTSSEEE
T ss_pred eEEECCCCCEEEEECCC--------------------CCeEEEEECCCCeEEEEEECCCCcc------ceEECCCCCEEE
Confidence 56677889888775432 2368999999999876655443111 22222 34555
Q ss_pred eeeecccEEEEEEEccCCeEEEeee
Q 012703 125 IVSLRYQTIHILQVRDLGNLVDVRT 149 (458)
Q Consensus 125 ILS~q~QtIhi~qI~~~G~fv~vr~ 149 (458)
+..-...+|+++.+. .|+.+..-.
T Consensus 90 ~~~~~~~~v~v~d~~-~~~~~~~~~ 113 (391)
T 1l0q_A 90 VTNMASSTLSVIDTT-SNTVAGTVK 113 (391)
T ss_dssp EEETTTTEEEEEETT-TTEEEEEEE
T ss_pred EEECCCCEEEEEECC-CCeEEEEEe
Confidence 555556788888876 466655443
No 8
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=40.83 E-value=33 Score=31.10 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=32.2
Q ss_pred ceeEEEEEEcCCCeEeeeeeeccceEEee-cc---cceEee--cceeeeeeecccEEEEEEEcc
Q 012703 83 EKITFHLLRLEDGVVLDEKVFHNDFINLA-HN---MGVFLY--DDLLAIVSLRYQTIHILQVRD 140 (458)
Q Consensus 83 e~ytfhlVdL~~G~v~D~~~f~~D~I~Ls-HN---~Gv~L~--~dlLAILS~q~QtIhi~qI~~ 140 (458)
.+=+++++|+++|.+.--..+......-. .- .++.+- +..|.|-+-...+|.|+.+..
T Consensus 241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 34568899999999833222222100000 00 112222 356777777778999999863
No 9
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=40.43 E-value=73 Score=30.33 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=47.3
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 151 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG 151 (458)
++..||+++|++..+..+.... .+ .|+.+.++.|=+|.-+..+|++|... +++.+..=+.|
T Consensus 44 ~v~~vD~~tgkv~~~~~l~~~~--fg--eGi~~~~~~ly~ltw~~~~v~v~D~~-tl~~~~ti~~~ 104 (243)
T 3mbr_X 44 SVRKVDLETGRILQRAEVPPPY--FG--AGIVAWRDRLIQLTWRNHEGFVYDLA-TLTPRARFRYP 104 (243)
T ss_dssp EEEEEETTTCCEEEEEECCTTC--CE--EEEEEETTEEEEEESSSSEEEEEETT-TTEEEEEEECS
T ss_pred eEEEEECCCCCEEEEEeCCCCc--ce--eEEEEeCCEEEEEEeeCCEEEEEECC-cCcEEEEEeCC
Confidence 5889999999999888776543 22 48999999999999999999999865 45555444443
No 10
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=37.25 E-value=2.1e+02 Score=26.29 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=38.1
Q ss_pred eeEEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 012703 84 KITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 151 (458)
Q Consensus 84 ~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG 151 (458)
+-+++++|+.+|.+.......... .++.+. +..|++..-...+|+++.+. .|+.+..-..|
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~~~------~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~ 157 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGKSP------LGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSVG 157 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSE------EEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECC
T ss_pred CCEEEEEECCCCeEEEEEeCCCCc------ceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEecC
Confidence 357999999999886655433322 133333 33565556666789998876 47776554444
No 11
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=34.41 E-value=1.3e+02 Score=30.81 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.7
Q ss_pred eEEEEEEeecceEEEEEeC
Q 012703 275 AFFAVYNMETTEVVAFYQN 293 (458)
Q Consensus 275 s~fvvYn~~t~eVl~vyen 293 (458)
.-.+|||..|++++.+...
T Consensus 505 ~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 505 SALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp CEEEEEETTTTEEEEEECC
T ss_pred CeEEEEECCCceEEEeecC
Confidence 4457799999999888753
No 12
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=33.41 E-value=2.5e+02 Score=24.77 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=48.8
Q ss_pred EEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceeee
Q 012703 48 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAI 125 (458)
Q Consensus 48 sLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAI 125 (458)
.-+..||+++++++.. +-+++++|+.+|.+..+..+.....+-.+-.++.+- ++.|++
T Consensus 39 ~~~s~dg~~l~v~~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 39 PMVAPGGRIAYATVNK--------------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp EEECTTSSEEEEEETT--------------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred eEEcCCCCEEEEEeCC--------------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 4467788887775421 125889999999987766553211111122344443 345666
Q ss_pred eee-----------cccEEEEEEEccCCeEEEeeeeCC
Q 012703 126 VSL-----------RYQTIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 126 LS~-----------q~QtIhi~qI~~~G~fv~vr~IG~ 152 (458)
.+- ...+|+++.+. +|+.+..-..|.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~ 135 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEAPR 135 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEECCS
T ss_pred EecccccccccccccCceEEEEECC-CCcEEEEEeCCC
Confidence 542 24788888875 577665544443
No 13
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=33.29 E-value=1.2e+02 Score=27.40 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=39.1
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeecc--eeeeeeecccE-EEEEEEccCCeEEEe
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDD--LLAIVSLRYQT-IHILQVRDLGNLVDV 147 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~d--lLAILS~q~Qt-Ihi~qI~~~G~fv~v 147 (458)
++.++|+++|.+.........- .++.+..| .|.+.+....+ |++|.+..+|.+.+.
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~------~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~ 167 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDA------VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT 167 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTE------EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred cEEEEECCCCCeEEEEECCCCc------cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence 8999999999987765443221 35555544 56666666455 999999888887665
No 14
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=29.76 E-value=1.1e+02 Score=29.43 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=46.9
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeecceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYDDLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 151 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG 151 (458)
++..||+++|++..+..+.... .+ .|+.+.++.|=++.-+..++.+|... +++.+..=+.|
T Consensus 66 ~v~~vD~~Tgkv~~~~~l~~~~--Fg--eGit~~g~~ly~ltw~~~~v~v~D~~-t~~~~~ti~~~ 126 (262)
T 3nol_A 66 SIRKVDIESGKTLQQIELGKRY--FG--EGISDWKDKIVGLTWKNGLGFVWNIR-NLRQVRSFNYD 126 (262)
T ss_dssp EEEEECTTTCCEEEEEECCTTC--CE--EEEEEETTEEEEEESSSSEEEEEETT-TCCEEEEEECS
T ss_pred eEEEEECCCCcEEEEEecCCcc--ce--eEEEEeCCEEEEEEeeCCEEEEEECc-cCcEEEEEECC
Confidence 6889999999999988765422 11 48999999999999999999999875 46655444443
No 15
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=28.22 E-value=3.2e+02 Score=24.39 Aligned_cols=60 Identities=7% Similarity=0.134 Sum_probs=39.9
Q ss_pred eEEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceeeeeeecccEEEEEEEccCCeEEEeeeeCC
Q 012703 85 ITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 85 ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~ 152 (458)
-+++++|+.+|.+....... +..++.+- ++.|.|.+-...+|+++.+. +|+.+..-..|.
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~-------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~ 314 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAP-------ESLAVLFNPARNEAYVTHRQAGKVSVIDAK-SYKVVKTFDTPT 314 (353)
T ss_dssp SEEEEEETTTCCEEEEEECS-------SCCCEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEEEECCS
T ss_pred CEEEEEECCCCcEEEEEEcC-------CCceEEECCCCCEEEEEECCCCeEEEEECC-CCeEEEEEecCC
Confidence 46889999999987665542 22344443 34566666667889999876 477776555554
No 16
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=27.09 E-value=3.4e+02 Score=25.31 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=36.0
Q ss_pred EEEEEEcC-CCeEeeeeee-ccceEEeecccceEee--cceeeeeeecccEEEEEEEccCCeEEEeeee
Q 012703 86 TFHLLRLE-DGVVLDEKVF-HNDFINLAHNMGVFLY--DDLLAIVSLRYQTIHILQVRDLGNLVDVRTI 150 (458)
Q Consensus 86 tfhlVdL~-~G~v~D~~~f-~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIhi~qI~~~G~fv~vr~I 150 (458)
++.++++. +|.+...... ..+ .-.|-+|+.+- +..|++-+....+|++|.+.++|++..+.++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~ 186 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQ--ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV 186 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECC--TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeC--CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence 56788886 6776543221 000 01122344443 3456666666679999999745887665544
No 17
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=27.05 E-value=1.7e+02 Score=31.39 Aligned_cols=73 Identities=12% Similarity=-0.009 Sum_probs=44.8
Q ss_pred chhhhhcceeEEEEccCCCeeeeeeeEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeee
Q 012703 22 KRFESFFTQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 101 (458)
Q Consensus 22 ~~F~~~F~~~~~~~l~~~~e~L~refsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~ 101 (458)
.+++..-+..+.+.+..+....+-||-. +++|..+|++...... ..++. ....+++ .|.-|| .+|+|+.+-
T Consensus 229 ~elD~~Gkvv~~~~lp~g~~~~HHD~~~-l~nGn~Lv~v~~~d~~----~~dG~--~~~~vdD-~I~EVD-~tGeVv~eW 299 (571)
T 3elq_A 229 YEFDMMGQVLEDHKLPRGFADATHESIE-TPNGTVLLRVGKSNYR----RDDGV--HVTTIRD-HILEVD-KSGRVVDVW 299 (571)
T ss_dssp EEECTTCCEEEEEECCTTEECBCSCEEE-CTTSCEEEEEEETTEE----CTTSC--EECCCSC-EEEEEC-TTSCEEEEE
T ss_pred EEECCCCcEEEEEECCCCccccccceEE-cCCCcEEEEEeccccc----CCCCc--ccceecc-EEEEEC-CCCCEEEEE
Confidence 4455556666777776554556777654 8999999886432111 11121 1124566 588999 999988765
Q ss_pred ee
Q 012703 102 VF 103 (458)
Q Consensus 102 ~f 103 (458)
.+
T Consensus 300 ~~ 301 (571)
T 3elq_A 300 DL 301 (571)
T ss_dssp EH
T ss_pred Eh
Confidence 53
No 18
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=21.09 E-value=2.4e+02 Score=26.65 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=42.2
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEeec-ceeeeeeecccEEEEEEEccCCeEEEeeeeC
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYD-DLLAIVSLRYQTIHILQVRDLGNLVDVRTIG 151 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~-dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG 151 (458)
.++.+|+. |.+..+..+.-. ..--||.+.+ +.++|.+=..+++++|++..+|....++.++
T Consensus 50 ~I~~ld~~-g~v~~~i~l~g~----~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~ 111 (255)
T 3qqz_A 50 AIVEMTTN-GDLIRTIPLDFV----KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIK 111 (255)
T ss_dssp EEEEEETT-CCEEEEEECSSC----SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEE
T ss_pred eEEEEeCC-CCEEEEEecCCC----CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeec
Confidence 47788998 999998877421 2223655544 5667776677899999998888755555554
No 19
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=20.88 E-value=1.1e+02 Score=26.75 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=41.9
Q ss_pred CcceeEEEEEEcCCCeEeeeeeeccceEEe--ecccceEeecceeeeeee----------cccEEEEEEE-ccCCeEEEe
Q 012703 81 FIEKITFHLLRLEDGVVLDEKVFHNDFINL--AHNMGVFLYDDLLAIVSL----------RYQTIHILQV-RDLGNLVDV 147 (458)
Q Consensus 81 ~le~ytfhlVdL~~G~v~D~~~f~~D~I~L--sHN~Gv~L~~dlLAILS~----------q~QtIhi~qI-~~~G~fv~v 147 (458)
.++.-+||.|+..||..||-. +..|-+.- .++ |-...|.++-|.=- -..++++||| -+||.-+.+
T Consensus 29 ~~~~~~~y~V~F~DgS~s~dl-~PedIvs~dc~~~-GpP~~G~~V~V~W~DG~~y~a~f~g~~~~~~YtV~FeDgs~~~~ 106 (123)
T 2xdp_A 29 AVTSQTFYEVMFDDGSFSRDT-FPEDIVSRDCLKL-GPPAEGEVVQVKWPDGKLYGAKYFGSNIAHMYQVEFEDGSQIAM 106 (123)
T ss_dssp EEEEEEEEEEEETTSCEEEEE-CGGGBCSSCHHHH-CCCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEECTTSCEEEE
T ss_pred EEeeEEEEEEEcCCCCccCCC-CHhHccccccccc-CCCCCCCEEEEEcCCCCEEeEEEeeeeeEEEEEEEECCCCeEEe
Confidence 578899999999999999963 33333211 122 56666666555542 3457888998 356764444
Done!