Query 012703
Match_columns 458
No_of_seqs 75 out of 77
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 14:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012703.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012703hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jmxb_ b.69.2.2 (B:) Quinohem 82.1 2.8 0.0002 35.5 8.9 77 50-152 4-82 (346)
2 d1pbyb_ b.69.2.2 (B:) Quinohem 45.6 33 0.0024 28.2 8.0 69 29-119 22-90 (337)
3 d1qfma1 b.69.7.1 (A:1-430) Pro 34.1 58 0.0042 29.8 8.5 35 83-117 149-186 (430)
4 d1pbyb_ b.69.2.2 (B:) Quinohem 30.5 69 0.005 26.0 7.6 61 86-150 12-74 (337)
5 d1l0qa2 b.69.2.3 (A:1-301) Sur 28.3 1.3E+02 0.0097 23.8 11.0 61 85-152 224-286 (301)
6 d1v04a_ b.68.6.2 (A:) Serum pa 26.8 1.3E+02 0.0094 27.0 9.5 97 44-152 37-146 (340)
7 d2madh_ b.69.2.1 (H:) Methylam 26.0 29 0.0021 29.7 4.4 33 50-101 325-357 (373)
8 d1qksa2 b.70.2.1 (A:136-567) C 24.7 1.2E+02 0.0085 27.5 8.8 80 48-149 67-148 (432)
9 d2bbkh_ b.69.2.1 (H:) Methylam 20.7 46 0.0033 27.9 4.6 36 47-101 304-339 (355)
10 d1erja_ b.69.4.1 (A:) Tup1, C- 18.8 1.5E+02 0.011 24.7 7.6 54 85-139 330-386 (388)
No 1
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=82.09 E-value=2.8 Score=35.47 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=51.8
Q ss_pred EecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceEEeecccceEeec--ceeeeee
Q 012703 50 SMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYD--DLLAIVS 127 (458)
Q Consensus 50 ft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~--dlLAILS 127 (458)
|..+|+|+++++.. -++++||+++|++..+..+.... ...||.+-. ..|.|..
T Consensus 4 ~~~~~~~l~~~~~~---------------------~~v~v~D~~t~~~~~t~~~~~~~----~p~~l~~spDG~~l~v~~ 58 (346)
T d1jmxb_ 4 LKAGHEYMIVTNYP---------------------NNLHVVDVASDTVYKSCVMPDKF----GPGTAMMAPDNRTAYVLN 58 (346)
T ss_dssp CCTTCEEEEEEETT---------------------TEEEEEETTTTEEEEEEECSSCC----SSCEEEECTTSSEEEEEE
T ss_pred CCCCCcEEEEEcCC---------------------CEEEEEECCCCCEEEEEEcCCCC----CcceEEECCCCCEEEEEE
Confidence 45788998886544 27999999999999887765431 012344432 3444666
Q ss_pred ecccEEEEEEEccCCeEEEeeeeCC
Q 012703 128 LRYQTIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 128 ~q~QtIhi~qI~~~G~fv~vr~IG~ 152 (458)
-...+|+++.+. .|+.+....++.
T Consensus 59 ~~~~~v~~~d~~-t~~~~~~~~~~~ 82 (346)
T d1jmxb_ 59 NHYGDIYGIDLD-TCKNTFHANLSS 82 (346)
T ss_dssp TTTTEEEEEETT-TTEEEEEEESCC
T ss_pred CCCCcEEEEeCc-cCeeeeeecccc
Confidence 677899999876 577776655554
No 2
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=45.60 E-value=33 Score=28.19 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=41.8
Q ss_pred ceeEEEEccCCCeeeeeeeEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeeccceE
Q 012703 29 TQLYSVTLASCNELICKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHNDFI 108 (458)
Q Consensus 29 ~~~~~~~l~~~~e~L~refsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~D~I 108 (458)
+...++++...+... ....|..||++++|++.. . =+++++|+.+|++..+........
T Consensus 22 ~~~~~i~~~~~~~~~--~~i~~spDg~~l~v~~~~--~------------------~~v~v~D~~t~~~~~~~~~~~~~~ 79 (337)
T d1pbyb_ 22 AVDKVITIADAGPTP--MVPMVAPGGRIAYATVNK--S------------------ESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEECTTCTTCC--CCEEECTTSSEEEEEETT--T------------------TEEEEEETTTCCEEEEEECCBTTE
T ss_pred eEEEEEECCCCCCCc--cEEEECCCCCEEEEEECC--C------------------CeEEEEECCCCcEEEEEecCCCcc
Confidence 345556665443221 134678999999886433 1 168899999999998877655444
Q ss_pred EeecccceEee
Q 012703 109 NLAHNMGVFLY 119 (458)
Q Consensus 109 ~LsHN~Gv~L~ 119 (458)
.-....|+.+-
T Consensus 80 ~~~~~~~v~~s 90 (337)
T d1pbyb_ 80 RVKSLFGAALS 90 (337)
T ss_dssp EEECTTCEEEC
T ss_pred cccceeeEEEc
Confidence 33333344433
No 3
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=34.06 E-value=58 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=23.0
Q ss_pred ceeEEEEEEcCCCeEeeeeeecc--ceE-EeecccceE
Q 012703 83 EKITFHLLRLEDGVVLDEKVFHN--DFI-NLAHNMGVF 117 (458)
Q Consensus 83 e~ytfhlVdL~~G~v~D~~~f~~--D~I-~LsHN~Gv~ 117 (458)
|.|+++++||++|..++...-.+ ..| +..-++|++
T Consensus 149 e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~ 186 (430)
T d1qfma1 149 DWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMF 186 (430)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEE
T ss_pred chheeEEeccCcceecccccccccccceEEcCCCCEEE
Confidence 78999999999999876432111 233 444555554
No 4
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=30.49 E-value=69 Score=26.02 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=37.5
Q ss_pred EEEEEEcCCCeEeeeeeeccceEEeecccceEee--cceeeeeeecccEEEEEEEccCCeEEEeeee
Q 012703 86 TFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLY--DDLLAIVSLRYQTIHILQVRDLGNLVDVRTI 150 (458)
Q Consensus 86 tfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~--~dlLAILS~q~QtIhi~qI~~~G~fv~vr~I 150 (458)
+++++|+++|++..+......-... .++.+- |..|.|.+-...+|+++.+. .|+.+.--.+
T Consensus 12 ~v~v~D~~s~~~~~~i~~~~~~~~~---~~i~~spDg~~l~v~~~~~~~v~v~D~~-t~~~~~~~~~ 74 (337)
T d1pbyb_ 12 KLVVIDTEKMAVDKVITIADAGPTP---MVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDL 74 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC---CCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEEC
T ss_pred EEEEEECCCCeEEEEEECCCCCCCc---cEEEECCCCCEEEEEECCCCeEEEEECC-CCcEEEEEec
Confidence 5799999999998876554331111 123222 23455555667888888876 4776654443
No 5
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=28.34 E-value=1.3e+02 Score=23.78 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCeEeeeeeeccceEEeecccceEeec--ceeeeeeecccEEEEEEEccCCeEEEeeeeCC
Q 012703 85 ITFHLLRLEDGVVLDEKVFHNDFINLAHNMGVFLYD--DLLAIVSLRYQTIHILQVRDLGNLVDVRTIGS 152 (458)
Q Consensus 85 ytfhlVdL~~G~v~D~~~f~~D~I~LsHN~Gv~L~~--dlLAILS~q~QtIhi~qI~~~G~fv~vr~IG~ 152 (458)
-+++++|+.+|++..+.....+- .||.+-. ..|.|-.-..=+|+|+.+. +|+.+..-.+|.
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~~~------~~va~spdg~~l~va~~~~~~i~v~D~~-t~~~~~~~~vg~ 286 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGPDP------AGIAVTPDGKKVYVALSFCNTVSVIDTA-TNTITATMAVGK 286 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCSSE------EEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECSS
T ss_pred eeeeeeecCCCeEEEEEcCCCCE------EEEEEeCCCCEEEEEECCCCeEEEEECC-CCeEEEEEeCCC
Confidence 47899999999988765543321 1333322 2333333334588888876 588877666666
No 6
>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=26.82 E-value=1.3e+02 Score=27.03 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=52.9
Q ss_pred eeeeEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEee-eeeeccce----EEeecccceEe
Q 012703 44 CKDFFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLD-EKVFHNDF----INLAHNMGVFL 118 (458)
Q Consensus 44 ~refsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D-~~~f~~D~----I~LsHN~Gv~L 118 (458)
+-|..+ ++||...|.+... ..+ -. +.. +-..=.++++||+++.-.- ...+..+. -+-.| |+.|
T Consensus 37 ~EDi~~-~~dg~~~issg~~-~~~-~~------~~~-~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph--Gi~l 104 (340)
T d1v04a_ 37 SEDLEI-LPNGLAFISSGLK-YPG-IM------SFD-PDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH--GIST 104 (340)
T ss_dssp CCEEEE-CTTSEEEEEECCC-C----------------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE--EEEE
T ss_pred cceEEE-CCCCcEEEEecCc-cCC-CC------CCC-CCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc--ceeE
Confidence 447766 6899887763322 111 00 000 1112357889988763111 11111111 12235 9999
Q ss_pred ecc-----eeeeeee--cccEEEEEEEcc-CCeEEEeeeeCC
Q 012703 119 YDD-----LLAIVSL--RYQTIHILQVRD-LGNLVDVRTIGS 152 (458)
Q Consensus 119 ~~d-----lLAILS~--q~QtIhi~qI~~-~G~fv~vr~IG~ 152 (458)
+.+ .|+|..= ..++|-||++.. ++++..+++|..
T Consensus 105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 875 5666653 468999999965 446888888743
No 7
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}
Probab=25.96 E-value=29 Score=29.67 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred EecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeee
Q 012703 50 SMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 101 (458)
Q Consensus 50 ft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~ 101 (458)
|..||+++++++.. .+=+++++|+++|++..+.
T Consensus 325 ~spDG~~~l~vt~~-------------------~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 325 VAQDGGPDLYALSA-------------------GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCCEEEEEEeC-------------------CCCeEEEEECCCCCEEEEE
No 8
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=24.70 E-value=1.2e+02 Score=27.49 Aligned_cols=80 Identities=4% Similarity=-0.147 Sum_probs=47.3
Q ss_pred EEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeeeeecc--ceEEeecccceEeecceeee
Q 012703 48 FLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEKVFHN--DFINLAHNMGVFLYDDLLAI 125 (458)
Q Consensus 48 sLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~~f~~--D~I~LsHN~Gv~L~~dlLAI 125 (458)
..|..||||+.+|+.- =++.++|+.+|...-....+. .-..+..+...+-=|..|++
T Consensus 67 v~fSpDG~~l~~~s~d---------------------g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 67 SRLSASGRYLFVIGRD---------------------GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp EEECTTSCEEEEEETT---------------------SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred EEECCCCCEEEEEcCC---------------------CCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence 3688999999876422 257899999986443333332 11111111111111456777
Q ss_pred eeecccEEEEEEEccCCeEEEeee
Q 012703 126 VSLRYQTIHILQVRDLGNLVDVRT 149 (458)
Q Consensus 126 LS~q~QtIhi~qI~~~G~fv~vr~ 149 (458)
-+-.-++|.|+... .|+.+.+-.
T Consensus 126 s~~~~~~v~i~d~~-t~~~~~~~~ 148 (432)
T d1qksa2 126 GAYWPPQYVIMDGE-TLEPKKIQS 148 (432)
T ss_dssp EEEETTEEEEEETT-TCCEEEEEE
T ss_pred EcCCCCeEEEEeCc-cccceeeec
Confidence 77778999999876 577666543
No 9
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}
Probab=20.74 E-value=46 Score=27.89 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=0.0
Q ss_pred eEEEecCceEEEEEeeccccCCCCCCCCCCCCCCCcceeEEEEEEcCCCeEeeee
Q 012703 47 FFLSMEGNQFGLFATSTAQIHDAPTTGRAIQGVPFIEKITFHLLRLEDGVVLDEK 101 (458)
Q Consensus 47 fsLft~dgryvivass~~~~~~~~~~~~av~~~p~le~ytfhlVdL~~G~v~D~~ 101 (458)
..-|+.||+++++++.. .+=+++++|+++|++.-+.
T Consensus 304 ~~a~spDG~~~l~v~~~-------------------~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 304 SINVSQDEKPLLYALST-------------------GDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EEEECCSSSCEEEEEET-------------------TTTEEEEEETTTCCEEEEE
T ss_pred EEEEcCCCCeEEEEEEC-------------------CCCEEEEEECCCCCEEEEE
No 10
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.76 E-value=1.5e+02 Score=24.72 Aligned_cols=54 Identities=17% Similarity=0.008 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCeEeeeeeeccceEE-eecccceEe--ecceeeeeeecccEEEEEEEc
Q 012703 85 ITFHLLRLEDGVVLDEKVFHNDFIN-LAHNMGVFL--YDDLLAIVSLRYQTIHILQVR 139 (458)
Q Consensus 85 ytfhlVdL~~G~v~D~~~f~~D~I~-LsHN~Gv~L--~~dlLAILS~q~QtIhi~qI~ 139 (458)
-+++++|+++|....+..-+.+.|. ++-..++.. -+.+||.=| .-.+|.|+++.
T Consensus 330 g~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s-~Dg~I~iW~~~ 386 (388)
T d1erja_ 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS-GDCKARIWKYK 386 (388)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE-TTSEEEEEEEE
T ss_pred CEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe-CCCEEEEEeee
Confidence 4688999999988765543333321 111111111 134455544 33577777764
Done!