Query 012705
Match_columns 458
No_of_seqs 238 out of 422
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:38:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6w_A VP54, putative glycosyl 100.0 1.2E-42 4E-47 325.2 10.4 184 150-385 4-200 (213)
2 1g9r_A Glycosyl transferase; a 96.2 0.015 5E-07 56.9 9.2 87 221-330 94-197 (311)
3 1ll2_A Glycogenin-1; protein-s 95.5 0.022 7.5E-07 56.9 7.0 83 217-331 89-173 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 95.0 0.054 1.9E-06 52.7 7.9 91 204-331 82-174 (263)
5 3tzt_A Glycosyl transferase fa 94.7 0.084 2.9E-06 51.1 8.4 132 183-345 55-210 (276)
6 2fy7_A Beta-1,4-galactosyltran 49.8 1E+02 0.0034 29.6 10.4 77 151-239 64-146 (287)
7 2c0n_A A197; thermophil protei 41.6 21 0.00071 33.8 3.9 51 180-235 16-66 (203)
8 2nxv_A ATP synthase subunits r 27.6 1.5E+02 0.0051 27.0 7.3 75 151-240 15-91 (249)
9 2lju_A Putative oxidoreductase 21.9 65 0.0022 27.6 3.3 19 178-196 69-87 (108)
10 3nq4_A 6,7-dimethyl-8-ribityll 19.7 4.7E+02 0.016 23.4 8.7 66 149-237 10-79 (156)
No 1
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=100.00 E-value=1.2e-42 Score=325.18 Aligned_cols=184 Identities=22% Similarity=0.459 Sum_probs=147.7
Q ss_pred CCCcEEEEEccCCCCCCCCcchHHHHHHHHHHHHHHHHcCccEEEecccc-Cc-cCCCccchHHHHHHHHHhCCCccEEE
Q 012705 150 GKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHGIEIIYNMAHL-DK-ELSGYWAKLPLLRKLMLSHPEIEWIW 227 (458)
Q Consensus 150 g~prIvIVT~sdp~~~~~~~gd~yl~ksikNr~dYArrHGY~~~~~~a~l-d~-~~~~sWaKip~LR~aM~a~P~aEWIw 227 (458)
.+|||+||||++|.+| +|++++++||++||++|||+++|+...+ +. ++.+.|.|.++||+||.+||++||||
T Consensus 4 ~~p~IllvtGs~p~ew------~yl~ksiKNK~DYArrHGYelfy~d~~l~k~~e~a~eW~ksW~IR~AM~khPeAEWfW 77 (213)
T 2p6w_A 4 TTPCITILSGHFPKET------IYARKTKELVEEYCSIHGYNFYYEESEPLETEEHALHFRRSWIIQQAAEKFPSTEWFL 77 (213)
T ss_dssp --CCEEEEEECSCTTC------HHHHHHHHHHHHHHHHHTCEEEEECSCCSCCSHHHHHHTHHHHHHHHHHHCTTCSEEE
T ss_pred CCceEEEEeCCCCCCc------HHHHHHHHHHHHHHHHcCCeEEEeecccccchhhcccchhhHHHHHHHHHCCCceEEE
Confidence 4799999999999986 8999999999999999999999975443 32 36677999999999999999999999
Q ss_pred EEeCCceeeccCCCCCCccc---CCCCeeecCCcceeeccCCCcccccccce-------eecCHHHHHHHHHhcccCCCC
Q 012705 228 WMDSDAMFTDMVFELPMDKY---KDYNLVVHGYHDLMFIQKSWIALNTGSFL-------FRNCQWSLDLLDAWAPYGPKG 297 (458)
Q Consensus 228 WLDsDAlImN~~~~Lple~y---~d~nlvI~g~~dlIitq~dw~GLNtGsFL-------IRNs~WS~~fLDaWa~~~P~~ 297 (458)
|||+||+||||++++|+++| ++.|+++|||.++++.+ .|||+|||| |||||||++|||+|++| |
T Consensus 78 WLDsDAlIMDmnf~lPLe~yldl~~~NlvvHGw~e~~~~~---~~lNtGvfL~~~~~~~irncqWSld~~~~w~~~-~-- 151 (213)
T 2p6w_A 78 WLDSDVYVNPKNKNKPITSFIDLSDPNILYHTFHEAPWGS---YPINTGVKFVHKDALEIEKIVWSLRNEAPWNTF-P-- 151 (213)
T ss_dssp EECTTEEECGGGTTSCGGGTCCCCCTTCCEEEECCTTTSS---SSCCTTEEEEEGGGHHHHHHHHHTTTSTTTTST-T--
T ss_pred EecCCceeecCCCCCcHHHccccccCceeecccccccccc---ccccceeeeecccchhhhhceeehhhhhcccCC-C--
Confidence 99999999999999999999 99999999998887654 499999999 99999999999999986 4
Q ss_pred ccchhhhhhHHHhhcCCCCCCCCchHHH-HHHHHhCCccccceeeeeccchhcccchhhhhhhHHHHhhcCCCCCCCCCC
Q 012705 298 VIRDEAGKIMTAYLKGRPAFEADDQSAL-IYLLLTQKDKWIDKVFIESEFYLHGYWVGLVDRYEEMMEKYHPGLGDERWP 376 (458)
Q Consensus 298 ~~~~~~G~~l~~~l~~~~~f~~~DQsAL-~~LL~~~~~~w~~kv~l~~q~~lngYw~~iv~~ye~~~~~y~~G~gD~r~d 376 (458)
.||... +|+.- +.-.+-.+-.+|.+|+-- ..|-+.. .-.
T Consensus 152 ----------------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~----------~~~ 191 (213)
T 2p6w_A 152 ----------------------YEQKTVYEYVFP----RIPGRYIVHDPYTLNCIV----KAYPEHV----------KDA 191 (213)
T ss_dssp ----------------------THHHHHHHTHHH----HSTTSEEEECCTTTSEET----TTCTTTG----------GGC
T ss_pred ----------------------cccceeeeeecc----CCCcceEecCcceeeeeh----hhchhhh----------hhh
Confidence 345443 45543 344555555678888652 2222211 113
Q ss_pred eEEEccCCc
Q 012705 377 FVTHFVGCK 385 (458)
Q Consensus 377 FVvHFaGC~ 385 (458)
+.||++|..
T Consensus 192 ~~~~~~~~~ 200 (213)
T 2p6w_A 192 LFVHMCGTS 200 (213)
T ss_dssp SEEECTTCC
T ss_pred hhhhhccCc
Confidence 889997765
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=96.22 E-value=0.015 Score=56.94 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=47.8
Q ss_pred CCccEEEEEeCCceeeccCC---CCCCcccCCCCee-ecC-C----cc--eeec-cCCCcccccccceeecCHHH-----
Q 012705 221 PEIEWIWWMDSDAMFTDMVF---ELPMDKYKDYNLV-VHG-Y----HD--LMFI-QKSWIALNTGSFLFRNCQWS----- 283 (458)
Q Consensus 221 P~aEWIwWLDsDAlImN~~~---~Lple~y~d~nlv-I~g-~----~d--lIit-q~dw~GLNtGsFLIRNs~WS----- 283 (458)
|+.+.|.+||+|.+|...=- .++++ +..+- +.. . .. ..+. ...-..+|+|++++..+.|-
T Consensus 94 ~~~~kvlyLD~D~iv~~di~eL~~~~l~---~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~ 170 (311)
T 1g9r_A 94 ADCDKVLYLDIDVLVRDSLTPLWDTDLG---DNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIF 170 (311)
T ss_dssp CSCSCEEEECSSEEECSCCHHHHTCCCT---TCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECHHHHTTSCHH
T ss_pred hhcCEEEEEcCCeEeccCHHHHhccCCC---CcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeeeHHHHHhcchH
Confidence 88999999999999986311 12221 11110 110 0 00 0000 01235899999999977663
Q ss_pred HHHHHHhcccCCCCccchhhhhhHHHhhcCCCCCCCCchHHHHHHHH
Q 012705 284 LDLLDAWAPYGPKGVIRDEAGKIMTAYLKGRPAFEADDQSALIYLLL 330 (458)
Q Consensus 284 ~~fLDaWa~~~P~~~~~~~~G~~l~~~l~~~~~f~~~DQsAL~~LL~ 330 (458)
..+++.... ....+...||+.|..++.
T Consensus 171 ~~~~~~~~~--------------------~~~~~~~~DQd~lN~~f~ 197 (311)
T 1g9r_A 171 KMSSEWVEQ--------------------YKDVMQYQDQDILNGLFK 197 (311)
T ss_dssp HHHHHHHHH--------------------HTTTCSSHHHHHHHHHHT
T ss_pred HHHHHHHHh--------------------ccCcCccCCcCHHHHHHc
Confidence 333333221 011234579999988775
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=95.47 E-value=0.022 Score=56.91 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=47.6
Q ss_pred HHhCCCccEEEEEeCCceeeccCCCCCCcccCCCCeeecCCcceeeccCCC-cccccccceeecCHHH-HHHHHHhcccC
Q 012705 217 MLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIQKSW-IALNTGSFLFRNCQWS-LDLLDAWAPYG 294 (458)
Q Consensus 217 M~a~P~aEWIwWLDsDAlImN~~~~Lple~y~d~nlvI~g~~dlIitq~dw-~GLNtGsFLIRNs~WS-~~fLDaWa~~~ 294 (458)
+-..++.+.|.|||+|++|...--+| +.-..+.. -+|. .| ..+|+|+|+++.+.-. ..+++...
T Consensus 89 i~~l~~ydrvlYLDaD~lv~~di~eL----f~~~~~aA--v~d~-----~~~~~fNsGvmlin~~~~~~~~l~~~~~--- 154 (333)
T 1ll2_A 89 CWSLTQYSKCVFMDADTLVLANIDDL----FEREELSA--APDP-----GWPDCFNSGVFVYQPSVETYNQLLHVAS--- 154 (333)
T ss_dssp GGGCTTCSEEEEECTTEEECSCCGGG----GGSCSSEE--EECS-----SSTTSEEEEEEEECCCHHHHHHHHHHHH---
T ss_pred HhHhcCCCeEEEEeCCEEeccCHHHH----hCCCceeE--EecC-----CCCcceeeeEEEEeCCHHHHHHHHHHHH---
Confidence 33347889999999999998632211 11001110 0111 22 4899999999876321 22333222
Q ss_pred CCCccchhhhhhHHHhhcCCCCCCCCchHHHHHHHHh
Q 012705 295 PKGVIRDEAGKIMTAYLKGRPAFEADDQSALIYLLLT 331 (458)
Q Consensus 295 P~~~~~~~~G~~l~~~l~~~~~f~~~DQsAL~~LL~~ 331 (458)
....+...||+.|..++..
T Consensus 155 ------------------~~~~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 155 ------------------EQGSFDGGDQGLLNTFFNS 173 (333)
T ss_dssp ------------------HTCCTTSSHHHHHHHHTTT
T ss_pred ------------------hcCCCCCCCHHHHHHHHHh
Confidence 1123445799999998863
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=94.98 E-value=0.054 Score=52.66 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=52.8
Q ss_pred CCccchHHHHHHHHHhCCCccEEEEEeCCceeeccCCCCCCcccCCCCeeecCCcceeeccCCC-cccccccceeecCHH
Q 012705 204 SGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMFTDMVFELPMDKYKDYNLVVHGYHDLMFIQKSW-IALNTGSFLFRNCQW 282 (458)
Q Consensus 204 ~~sWaKip~LR~aM~a~P~aEWIwWLDsDAlImN~~~~Lple~y~d~nlvI~g~~dlIitq~dw-~GLNtGsFLIRNs~W 282 (458)
..+|.|+.+-+ ..+.+=|.|||+|+++...--+| +.-..+... +|. .| ..+|+|+|+|..+..
T Consensus 82 ~~~~~kl~~~~-----l~~~~~vlylD~D~~v~~~~~~L----f~~~~~aA~--~d~-----~~~~~fNsGv~li~p~~~ 145 (263)
T 3u2u_A 82 GVTLTKLHCWS-----LTQYSKCVFMDADTLVLANIDDL----FDREELSAA--PDP-----GWPDCFNSGVFVYQPSVE 145 (263)
T ss_dssp GGGGGGGGGGG-----CTTCSEEEEECTTEEECSCCGGG----GGSCSSEEE--ECT-----TSTTSEEEEEEEECCCHH
T ss_pred hHHhHHHHhcc-----ccCcceEEEEcCCEeeccCHHHH----hCCCcceEe--ccC-----CCCccccCeEEEEcccHH
Confidence 45688876554 23579999999999998732211 110011100 110 12 479999999998642
Q ss_pred H-HHHHHHhcccCCCCccchhhhhhHHHhhcCCCCCCCCchHHHHHHHHh
Q 012705 283 S-LDLLDAWAPYGPKGVIRDEAGKIMTAYLKGRPAFEADDQSALIYLLLT 331 (458)
Q Consensus 283 S-~~fLDaWa~~~P~~~~~~~~G~~l~~~l~~~~~f~~~DQsAL~~LL~~ 331 (458)
. ..+++... ....+...||+.|..++..
T Consensus 146 ~~~~l~~~~~---------------------~~~~~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 146 TYNQLLHLAS---------------------EQGSFDGGDQGILNTFFSS 174 (263)
T ss_dssp HHHHHHHHHH---------------------HHCCTTSSHHHHHHHHTTT
T ss_pred HHHHHHHHHH---------------------hcCCCCcccHHHHHHHhcc
Confidence 2 12222221 1123455899999999974
No 5
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=94.71 E-value=0.084 Score=51.06 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=60.8
Q ss_pred HHHHHcCccEEE-ecc--ccCc-cCCCccchHHHHHHHHHh-CC-CccEEEEEeCCceeeccCC---CCCCcccCCCCe-
Q 012705 183 DYCRLHGIEIIY-NMA--HLDK-ELSGYWAKLPLLRKLMLS-HP-EIEWIWWMDSDAMFTDMVF---ELPMDKYKDYNL- 252 (458)
Q Consensus 183 dYArrHGY~~~~-~~a--~ld~-~~~~sWaKip~LR~aM~a-~P-~aEWIwWLDsDAlImN~~~---~Lple~y~d~nl- 252 (458)
..++..|.++.+ ... .+.. .....|+...+.|=.+-. .| +.+.|.|||+|+++...=- .++++ +..+
T Consensus 55 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~---~~~~a 131 (276)
T 3tzt_A 55 EDLKKFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDIS---DYILA 131 (276)
T ss_dssp HHHHTTTCEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCT---TSSEE
T ss_pred HHHHHcCCEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCC---CCeEE
Confidence 345566766653 221 1111 012236555555554443 37 6999999999999985311 12221 1111
Q ss_pred -eec-C-------CcceeeccCCCcccccccceeecCHHHH-----HHHHHhcccCCCCccchhhhhhHHHhhcCCCCCC
Q 012705 253 -VVH-G-------YHDLMFIQKSWIALNTGSFLFRNCQWSL-----DLLDAWAPYGPKGVIRDEAGKIMTAYLKGRPAFE 318 (458)
Q Consensus 253 -vI~-g-------~~dlIitq~dw~GLNtGsFLIRNs~WS~-----~fLDaWa~~~P~~~~~~~~G~~l~~~l~~~~~f~ 318 (458)
+-+ + ....-+... -.++|+|++++-...|-. .+++.... ....+.
T Consensus 132 av~d~~~~~~~~~~~~~~l~~~-~~yfNsGV~linl~~~R~~~~~~~~~~~~~~--------------------~~~~~~ 190 (276)
T 3tzt_A 132 AASHTGKTDMANNVNRIRLGTD-TDYYNSGLLLINLKRAREEIDPDEIFSFVED--------------------NHMNLL 190 (276)
T ss_dssp EEEC---------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHH--------------------C-----
T ss_pred EEEecccchHHHHHHHhcCCCC-CCeEEeeEEEEEHHHHHhhhHHHHHHHHHHh--------------------cccccc
Confidence 100 0 001111111 268999999998887754 33332221 111233
Q ss_pred CCchHHHHHHHHhCCccccceeeeecc
Q 012705 319 ADDQSALIYLLLTQKDKWIDKVFIESE 345 (458)
Q Consensus 319 ~~DQsAL~~LL~~~~~~w~~kv~l~~q 345 (458)
..||++|..++. .++...|.
T Consensus 191 ~~DQd~LN~~f~-------~~~~~Lp~ 210 (276)
T 3tzt_A 191 LPDQDILNAMYG-------DRIYPLDD 210 (276)
T ss_dssp ---CHHHHHHHG-------GGEEEEEH
T ss_pred CCChhHHHHHHh-------CCEEECCc
Confidence 479999998886 34556664
No 6
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=49.79 E-value=1e+02 Score=29.65 Aligned_cols=77 Identities=9% Similarity=-0.041 Sum_probs=44.4
Q ss_pred CCcEEEEEccCCCCCCCCcchHHHHHHHHHHHHHHHHc--CccEEEeccccCccCCCccchHHHHHHHH----HhCCCcc
Q 012705 151 KPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLH--GIEIIYNMAHLDKELSGYWAKLPLLRKLM----LSHPEIE 224 (458)
Q Consensus 151 ~prIvIVT~sdp~~~~~~~gd~yl~ksikNr~dYArrH--GY~~~~~~a~ld~~~~~sWaKip~LR~aM----~a~P~aE 224 (458)
.|+|.||...-.. ..+|.++++.-..+.+.. .|++++-.. ..+..+.+..++-..+ .. -+.|
T Consensus 64 ~~~VSIIIP~yN~-------~~~L~~~L~sl~~~l~q~~~~~EIiVVdd----s~d~~f~~a~a~N~G~~~al~~-A~gd 131 (287)
T 2fy7_A 64 PHKVAIIIPFRNR-------QEHLKYWLYYLHPVLQRQQLDYGIYVINQ----AGDTIFNRAKLLNVGFQEALKD-YDYT 131 (287)
T ss_dssp SCEEEEEEEESSC-------HHHHHHHHHHHHHHHHHTTCEEEEEEEEE----CSSSCCCHHHHHHHHHHHHHHH-SCCC
T ss_pred CCcEEEEEeeCCC-------HHHHHHHHHHHHHHHHHhcCCceEEEEEe----CCCCccchhhhhhhHHHHHHHh-CCCC
Confidence 4577666655532 456677766554433333 355553211 1223455655555444 33 3679
Q ss_pred EEEEEeCCceeeccC
Q 012705 225 WIWWMDSDAMFTDMV 239 (458)
Q Consensus 225 WIwWLDsDAlImN~~ 239 (458)
||+++|+|+++.+-.
T Consensus 132 ~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 132 CFVFSDVDLIPMNDH 146 (287)
T ss_dssp EEEEECTTEEESBTT
T ss_pred EEEEECCCcccCCCc
Confidence 999999999987653
No 7
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=41.57 E-value=21 Score=33.81 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHcCccEEEeccccCccCCCccchHHHHHHHHHhCCCccEEEEEeCCcee
Q 012705 180 NKIDYCRLHGIEIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWWMDSDAMF 235 (458)
Q Consensus 180 Nr~dYArrHGY~~~~~~a~ld~~~~~sWaKip~LR~aM~a~P~aEWIwWLDsDAlI 235 (458)
.-++-|.++|+++..... ++-.+ -++=.++-. ..+.+++++++|||+|.+=
T Consensus 16 ~l~~~l~~~gi~~~l~~~--~SlI~--raRN~lv~~-Fl~~~~~dhllfIDAD~~~ 66 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR--RNHVA--VQREIALDM-FLEMKDYDTLAFLDEDVVP 66 (203)
T ss_dssp HHHHHHHHTTCCEEEECC--CSCHH--HHHHHHHHH-HHHCTTCCEEEEECTTEEE
T ss_pred HHHHHHHhCCCeEEEEcc--ccchH--HHHHHHHHH-HHhcCCCCEEEEEeCCCCc
Confidence 345678889999986543 21111 112122222 2344789999999999443
No 8
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=27.59 E-value=1.5e+02 Score=27.04 Aligned_cols=75 Identities=3% Similarity=-0.097 Sum_probs=39.9
Q ss_pred CCcEEEEEccCCCCCCCCcchHHHHHHHHHHHHHHHHc-CccEEE-eccccCccCCCccchHHHHHHHHHhCCCccEEEE
Q 012705 151 KPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLH-GIEIIY-NMAHLDKELSGYWAKLPLLRKLMLSHPEIEWIWW 228 (458)
Q Consensus 151 ~prIvIVT~sdp~~~~~~~gd~yl~ksikNr~dYArrH-GY~~~~-~~a~ld~~~~~sWaKip~LR~aM~a~P~aEWIwW 228 (458)
.+.|.||+..+. ..+|.++++.-..--... .|++++ +...-+ ..+ .-.++-..+.. -..|||++
T Consensus 15 ~~~iSII~~yN~--------~~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~d--~~g---~a~a~N~Gi~~-A~g~yl~f 80 (249)
T 2nxv_A 15 TLMFSVCSLVRD--------QAKYDRLLESFERFGFTPDKAEFLAADNREGN--QFH---GFSWHKQMLPR-CKGRYVIF 80 (249)
T ss_dssp CCSEEEEEEESC--------HHHHHHHHHHHHHTTCCTTTEEEEEEECTTSC--SCC---TTTHHHHHGGG-CCSSEEEE
T ss_pred cceEEEEEeeCC--------HHHHHHHHHHHHHhccCCCcEEEEEEECCCCC--ccc---HHHHHHHHHHh-cCCCEEEE
Confidence 457777776553 456666666322111111 177764 322211 011 12344444443 36799999
Q ss_pred EeCCceeeccCC
Q 012705 229 MDSDAMFTDMVF 240 (458)
Q Consensus 229 LDsDAlImN~~~ 240 (458)
||+|+++ +++.
T Consensus 81 ln~D~~~-~~~~ 91 (249)
T 2nxv_A 81 CHEDVEL-VDRG 91 (249)
T ss_dssp EETTEEC-SSCC
T ss_pred ECCCccc-CccH
Confidence 9999999 5543
No 9
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=21.89 E-value=65 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCccEEEec
Q 012705 178 VKNKIDYCRLHGIEIIYNM 196 (458)
Q Consensus 178 ikNr~dYArrHGY~~~~~~ 196 (458)
.+-=+.||++||+++++..
T Consensus 69 kE~AiayAek~G~~y~V~e 87 (108)
T 2lju_A 69 RELAIAYAVAHKIDYTVLQ 87 (108)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEec
Confidence 4566789999999999753
No 10
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=19.71 E-value=4.7e+02 Score=23.42 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.9
Q ss_pred CCCCcEEEEEccCCCCCCCCcchHHHHHHHHHHHHHHHHcC-c---cEEEeccccCccCCCccchHHHHHHHHHhCCCcc
Q 012705 149 DGKPKILLVTGSTPKPCDNPIGDHYLLKSVKNKIDYCRLHG-I---EIIYNMAHLDKELSGYWAKLPLLRKLMLSHPEIE 224 (458)
Q Consensus 149 ~g~prIvIVT~sdp~~~~~~~gd~yl~ksikNr~dYArrHG-Y---~~~~~~a~ld~~~~~sWaKip~LR~aM~a~P~aE 224 (458)
....||+||.+... +....+.++-=++..++|| . .+.+ -..|++|.-+.+++++..+.
T Consensus 10 ~~~~ri~IV~arfn--------~~I~~~Ll~gA~~~l~~~G~v~~~~i~v------~~VPGafEiP~aa~~la~~~---- 71 (156)
T 3nq4_A 10 APDARVAITIARFN--------QFINDSLLDGAVDALTRIGQVKDDNITV------VWVPGAYELPLATEALAKSG---- 71 (156)
T ss_dssp CTTCCEEEEEESTT--------HHHHHHHHHHHHHHHHHTTCCCTTSEEE------EEESSTTTHHHHHHHHHHHC----
T ss_pred CCCCEEEEEEeeCc--------HHHHHHHHHHHHHHHHHcCCCcccceEE------EEcCcHHHHHHHHHHHHhcC----
Confidence 45679999999885 3445566778888999999 5 2221 12689998777777777654
Q ss_pred EEEEEeCCceeec
Q 012705 225 WIWWMDSDAMFTD 237 (458)
Q Consensus 225 WIwWLDsDAlImN 237 (458)
+-|++|.=
T Consensus 72 -----~yDavIaL 79 (156)
T 3nq4_A 72 -----KYDAVVAL 79 (156)
T ss_dssp -----SCSEEEEE
T ss_pred -----CCCEEEEe
Confidence 35676653
Done!