BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012707
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 468 bits (1203), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/439 (53%), Positives = 300/439 (68%), Gaps = 15/439 (3%)
Query: 27 LIMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTK 86
+ GWD +LV ESY WVE+ + +P + WQ A+RD L+EVGV P+NGFTYDH+ GTK
Sbjct: 156 FVKRAGWDPKLVKESYPWVEREIVHQPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTK 215
Query: 87 IGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATG 146
IGGTIFD+ G+RHTAA+LL YANP L +L++A+V K++F G RP GV+F+D G
Sbjct: 216 IGGTIFDRFGRRHTAAELLAYANPQKLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKG 274
Query: 147 AKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDN 198
+H+A L N +E+I+S+GA+GSPQ+LMLSG I VVL+ VG+GM+DN
Sbjct: 275 NQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADN 334
Query: 199 PMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSP--RDYGMFSPKIGQL 256
PMN I VPS P+E SLIQ VGIT+ G Y+EA++G G SP YG+ S K
Sbjct: 335 PMNTILVPSKAPIEQSLIQTVGITKMGVYVEASTG---FGQSPESIHTHYGIMSNKNELF 391
Query: 257 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 316
S +P KQR PEA I K AF G FILEK+ P+S GHL L N +DNPSVT
Sbjct: 392 STIPAKQRRPEATQAYITRNKYQLHEAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVT 451
Query: 317 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYESMSVPILVNMTASAPVNLLPRHSN 375
FNYFK P DLQRCV+ I + K++ S F + + + +V +++++ A +NL P+ N
Sbjct: 452 FNYFKHPVDLQRCVEAIRLVSKVVTSNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLN 511
Query: 376 ASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 435
+ S+ QFC+DTV+TIWHYHGGC VGKVV + KVLGVD LRVIDGSTF SPGTNPQAT
Sbjct: 512 DTKSMAQFCKDTVVTIWHYHGGCLVGKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQAT 571
Query: 436 VMMLGRYMGVRILSERLAS 454
+MM+GRYMGV+IL ERL +
Sbjct: 572 MMMMGRYMGVKILRERLGN 590
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 345 bits (884), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 195/433 (45%), Positives = 260/433 (60%), Gaps = 50/433 (11%)
Query: 33 WDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIF 92
WD VN+SY+WVE+ + F P +R WQ+A+RD L+EVGV P+NGFT +H GTKIGG+ F
Sbjct: 156 WDLSSVNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTF 215
Query: 93 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLF----RIKGKARPVAHGVVFRDATGAK 148
D+ G+RH++ADLL YA S + + ++A+V +VL + G + A GVV+RD G
Sbjct: 216 DRTGRRHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSG-SNVSAIGVVYRDQLGRF 274
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 200
H A +++ + E+I+SAGALGSPQLL LSG I V LDQP VG + DNP
Sbjct: 275 HHALIRD--RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPR 332
Query: 201 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGE-NFAGGSPSPRDYGMFSPKIGQLSKV 259
N I + PVP+E SLIQVVG+T+ G+++EAAS FA SP +
Sbjct: 333 NGISIVPPVPMENSLIQVVGVTEDGAFLEAASNVIPFA------------SPLHSVFIRA 380
Query: 260 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 319
P +P + I+EK++GPVS G L L + + NP V FNY
Sbjct: 381 PA---SPLYVPVTT---------------IMEKILGPVSIGLLRLASTDVRINPVVRFNY 422
Query: 320 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 379
F +P+DL+RCV G I +I+ S++ F AP LP +
Sbjct: 423 FSDPQDLERCVNGTRKIGEILRSRAMQDFMIREWFGNRRFRFVG-AP---LPVDQSNDLV 478
Query: 380 LEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 439
+ FCR TV TIWHYHGG VGKVVD D KV+GV++LR++DGSTF SPGTNPQAT+MML
Sbjct: 479 MADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNSLRLVDGSTFNISPGTNPQATLMML 538
Query: 440 GRYMGVRILSERL 452
GRYMG+++L ER+
Sbjct: 539 GRYMGLKMLRERM 551
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/434 (38%), Positives = 240/434 (55%), Gaps = 48/434 (11%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
V WD LVN++Y+WVE + F+P + WQS +E GV P +GF+ DH GT+I G+
Sbjct: 154 VDWDMDLVNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEAGTRITGS 213
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD G RH A +LL N + L + +HASV K++F A GV++RD+ G HR
Sbjct: 214 TFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHR 271
Query: 151 AYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 202
A++++ K E+IVSAG +G+PQLL+LSG + NI VVL P VGQ + DNP N
Sbjct: 272 AFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 329
Query: 203 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 262
I + P P+E +++ V+GI+ +F S S + PP
Sbjct: 330 INILPPNPIEPTIVTVLGISN-----------DFYQCSFSSLPF-----------TTPPF 367
Query: 263 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFK 321
P L + F KV GP+S G L L+ + N +P+V FNY+
Sbjct: 368 SFFPST-------SYPLPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYS 418
Query: 322 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 381
P DL CV G+ I +++ + + +K E + N+ LP+ + E
Sbjct: 419 NPTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGIEGFNILGIP----LPKDQTDDAAFE 474
Query: 382 QFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 441
FCR++V + WHYHGGC VGKV+D D++V G+DALRV+DGSTF Y+P ++PQ +MLGR
Sbjct: 475 TFCRESVASYWHYHGGCLVGKVLDGDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGR 534
Query: 442 YMGVRILSERLASN 455
Y+G++IL ER AS+
Sbjct: 535 YVGIKILQERSASD 548
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 164/434 (37%), Positives = 241/434 (55%), Gaps = 48/434 (11%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
V WD LVN++Y+WVE + ++P + WQS + +E GV P +GF+ DH GT+I G+
Sbjct: 154 VDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGS 213
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD G RH A +LL N + L + +HASV K++F A GV++RD+ G H+
Sbjct: 214 TFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIF--SNAPGLTATGVIYRDSNGTPHQ 271
Query: 151 AYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 202
A++++ K E+IVSAG +G+PQLL+LSG + NI VVL P VGQ + DNP N
Sbjct: 272 AFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF 329
Query: 203 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 262
I + P P+E +++ V+GI+ +F S S + PP
Sbjct: 330 INILPPNPIEPTIVTVLGISN-----------DFYQCSFSSLPF-----------TTPPF 367
Query: 263 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFK 321
P A L + F KV GP+S G L L+ + N +P+V FNY+
Sbjct: 368 GFFPSA-------SYPLPNSTF--AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYS 418
Query: 322 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 381
DL CV G+ I +++ + + +K E + N+ LP+ + E
Sbjct: 419 NLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIP----LPKDQTDDAAFE 474
Query: 382 QFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 441
FCR++V + WHYHGGC VGKV+D D++V G++ALRV+DGSTF Y+P ++PQ +MLGR
Sbjct: 475 TFCRESVASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGR 534
Query: 442 YMGVRILSERLASN 455
Y+G++IL ER AS+
Sbjct: 535 YVGIKILQERSASD 548
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 288 bits (737), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 165/436 (37%), Positives = 244/436 (55%), Gaps = 47/436 (10%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
+ WD LVN++Y WVE + F+P + WQ+ +EVG+LP NGF+ DH+ GT++ G+
Sbjct: 155 IEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLEGTRLTGS 214
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD NG RH + +LL +P+ L + +HA+V K++F + A GV++ D+ G H+
Sbjct: 215 TFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFS-SDSSGVTAIGVIYTDSNGTTHQ 273
Query: 151 AYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 202
A+++ E+I+SAG +GSPQLL+LSG + NI+VV P VGQ + DNP N
Sbjct: 274 AFVRG--DGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYIYDNPRNF 331
Query: 203 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 262
I + P P+E S + V+GIT Y + S F S +P +G F P
Sbjct: 332 INILPPNPIEASTVTVLGITS-DFYQCSISSLPF---STAP--FGFF-----------PN 374
Query: 263 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFK 321
P L + F I+ KV GP+S G + L+ T + P+VTFNY+
Sbjct: 375 PTYP------------LPNTTF--AHIVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYS 420
Query: 322 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 381
DL CV G+ I + + S + +K E + ++ LP + + E
Sbjct: 421 NTTDLAHCVSGMKKIGEFLSSDALKPYKVEDLPGIEGFDILGIP----LPENQTDDAAFE 476
Query: 382 QFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 441
FCR+ V + WHYHGGC VG+V+D D++V G++ALRV+DGSTF +P ++PQ +MLGR
Sbjct: 477 TFCREAVASYWHYHGGCLVGEVLDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGR 536
Query: 442 YMGVRILSERLASNDS 457
YMG +IL ERLAS ++
Sbjct: 537 YMGTKILQERLASEEA 552
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 240/436 (55%), Gaps = 47/436 (10%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
+ WD LVN++Y+WVE + FEP + WQ+ + +E G+LP NGF+ DH+ GT++ G+
Sbjct: 154 IEWDMDLVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLAGTRLTGS 213
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD NG RH + +LL +P+ L + + A+V K++F + A GV++ D+ G H+
Sbjct: 214 TFDNNGTRHASDELLNKGDPNNLRVAVQAAVEKIIFS-SNTSGVTAIGVIYTDSNGTTHQ 272
Query: 151 AYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 202
A+++ + E+I+SAG +GSPQLL+LSG + NI+VV P VGQ + DNP N
Sbjct: 273 AFVRG--EGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYIYDNPRNF 330
Query: 203 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 262
I + P P+E S + V+GIT +F S S + PP
Sbjct: 331 INILPPNPIEASTVTVLGITS-----------DFYQCSISSLPF-----------DTPPF 368
Query: 263 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYFK 321
P L + F I+ KV GP+S G + L + + P+V FNY+
Sbjct: 369 SFFPTT-------SYPLPNQTF--AHIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYS 419
Query: 322 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 381
DL CV G+ + +++ + + +K E + N+ LP + + E
Sbjct: 420 NLTDLSHCVSGMKKLGEVLSTDALEPYKVEDLPGIDGFNILGIP----LPENQTDDAAFE 475
Query: 382 QFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 441
FCR++V + WHYHGGC VGKV+D ++V G++ALRV+DGSTF +P ++PQ +MLGR
Sbjct: 476 TFCRESVASYWHYHGGCLVGKVLDDGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGR 535
Query: 442 YMGVRILSERLASNDS 457
YMG++IL ER AS D+
Sbjct: 536 YMGIQILQERSASEDA 551
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 161/436 (36%), Positives = 235/436 (53%), Gaps = 47/436 (10%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
V WD LVNE+Y+WVE + ++P + WQS +E GV P NGF H GT++ G+
Sbjct: 155 VEWDLDLVNEAYEWVEDAIVYKPSNQSWQSITGTAFLEAGVHPDNGFGLVHEEGTRLTGS 214
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD +G RH + +LL +P L + + A+V K++F + A GVV+ D+ G HR
Sbjct: 215 TFDNSGTRHASDELLNKGDPDNLKVAVEAAVQKIIFSTESSGL-TAVGVVYTDSNGTSHR 273
Query: 151 AYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNA 202
A + K E+I+SAG LG+PQLL+LSG + NI+VV P VGQ ++DNP N
Sbjct: 274 ALVSG--KGEVILSAGTLGTPQLLLLSGVGPESYLTSLNISVVASHPYVGQYVNDNPRNF 331
Query: 203 IFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPK 262
I + P P+E S + V+GIT +F S S + PP
Sbjct: 332 INILPPNPIEPSTVTVLGITS-----------DFYQCSLSSLPF-----------DTPPF 369
Query: 263 QRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELR-TRNPNDNPSVTFNYFK 321
P L + F I+ KV GP+S G L L+ + N + P+V FNY
Sbjct: 370 SLFPTT-------SYPLPNQTF--AHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCS 420
Query: 322 EPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLE 381
+P DL CV G+ I + + + +K + + N+ + LP + + E
Sbjct: 421 DPVDLTHCVSGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFE 476
Query: 382 QFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGR 441
+FCRDTV + WHYHGG VGKV+D +++V G++ALRV+DGSTF +P ++PQ +MLGR
Sbjct: 477 KFCRDTVASYWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGR 536
Query: 442 YMGVRILSERLASNDS 457
Y+G +I+ ER AS ++
Sbjct: 537 YVGTKIVQERSASGEA 552
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/440 (35%), Positives = 231/440 (52%), Gaps = 67/440 (15%)
Query: 31 VGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGT 90
+ WD LVN++Y+WVE + +P + WQS + +G +E G+LP NGF+ DH GT++ G+
Sbjct: 154 IEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEAGTRLTGS 213
Query: 91 IFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHR 150
FD NG RH A +LL +P+ L + + ASV K+LF + A GV++ D+ G H+
Sbjct: 214 TFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFS-SNTSNLSAIGVIYTDSDGNSHQ 272
Query: 151 AYLK-NGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMN 201
A+++ NG E+IVSAG +G+PQLL+LSG + NITVV P VGQ + +NP N
Sbjct: 273 AFVRGNG---EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQFLYNNPRN 329
Query: 202 AIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPP 261
I P P+E S++ V+GI DY S S PP
Sbjct: 330 FINNFPPNPIEASVVTVLGIRS---------------------DYYQVSLSSLPFS-TPP 367
Query: 262 KQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP-NDNPSVTFNYF 320
P L + F I+ +V GP+S G + L + + P++ FNY+
Sbjct: 368 FSLFPTT-------SYPLPNSTF--AHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYY 418
Query: 321 KEPEDLQRCVQGISTIEKIIESKSFSKFK---------YESMSVPILVNMTASAPVNLLP 371
DL CV G+ + ++ +K+ +K + + VP LP
Sbjct: 419 SNSTDLANCVSGMKKLGDLLRTKALEPYKARDVLGIDGFNYLGVP-------------LP 465
Query: 372 RHSNASTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVIDGSTFYYSPGTN 431
+ S E FC D V + WHYHGG VGKV+D ++V+G+ ALRV+D STF Y P ++
Sbjct: 466 ENQTDDASFETFCLDNVASYWHYHGGSLVGKVLDDSFRVMGIKALRVVDASTFPYEPNSH 525
Query: 432 PQATVMMLGRYMGVRILSER 451
PQ +MLGRY+G++IL ER
Sbjct: 526 PQGFYLMLGRYVGLQILQER 545
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/373 (26%), Positives = 161/373 (43%), Gaps = 52/373 (13%)
Query: 94 QNGQRH-TAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRA 151
+NG+R TA L+ A LT++ HA +K+LF K A GV + GA R
Sbjct: 196 KNGRRSSTARGYLDMAKERPNLTIITHAMTNKILFNGK-----QAIGVEY--IQGADKRD 248
Query: 152 YLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAI 203
K E+++ AGA+ SPQ+L SG + +I VV D P VG+ + D+ +
Sbjct: 249 LKKVMANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVHDLPGVGENLQDHL--EM 306
Query: 204 FVPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSK 258
++ VSL + Y + A G F G G+ + + G F + +
Sbjct: 307 YLQYKCKQPVSLYPALKW-----YNQPAIGAEWLFLGKGIGASNQFEAGGFIRSSDEF-E 360
Query: 259 VPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFN 318
P Q +A A+ + F+ M S GH++L++++P ++PS+ FN
Sbjct: 361 WPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRSPSRGHIKLKSKDPFEHPSILFN 417
Query: 319 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAST 378
Y +D Q I +I+ + ++ E +S P L + T
Sbjct: 418 YMSTEQDWQEFRAAIRITREIMHQPALDPYRGEEIS-----------PGKQL----STDT 462
Query: 379 SLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQA 434
L+ F R+ T +H C++G+ VVDH +V G+ LRV+D S N A
Sbjct: 463 QLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGLQGLRVVDASIMPLIITGNLNA 522
Query: 435 TVMMLGRYMGVRI 447
T +M+ + +I
Sbjct: 523 TTIMMAEKIADQI 535
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 160/375 (42%), Gaps = 61/375 (16%)
Query: 95 NGQR-HTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 152
NG+R TA L+ A P LT++ +A+ ++LF K A GVV+ D +A
Sbjct: 197 NGRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK-----RAQGVVYLDG-----QAQ 246
Query: 153 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDN-PMNAI 203
+ + E+++ +GA+ SPQ+L SG +I VVLD P VGQ + D+ M
Sbjct: 247 ITAHARREVLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLDLPGVGQNLQDHLEMYMQ 306
Query: 204 F-VPSPVPVEVSLI----QVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQL 256
+ PV + +L+ +GI G+ I AS AGG RD + P I Q
Sbjct: 307 YECKEPVSLYPALLLRNQPAIGIEWMLKGTGI-GASNHFEAGGFIRTRDDDPW-PNI-QY 363
Query: 257 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 316
+P +A A+ F+ M S G ++LR+R+P ++PS+
Sbjct: 364 HFLP--------VAINYNGTNAIKMHGFQAHV---GSMRSPSRGRVKLRSRDPREHPSIL 412
Query: 317 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 376
FNY E D + I +II + +F+ +S + A
Sbjct: 413 FNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELSPGAELQSDA------------- 459
Query: 377 STSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 432
++ F R T +H C +G VVD + +V G++ LRV+D S N
Sbjct: 460 --QIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEGLRVVDASIMPRITTGNL 517
Query: 433 QATVMMLGRYMGVRI 447
A +ML + RI
Sbjct: 518 NAPTIMLAEKIADRI 532
>sp|Q7X2H8|CHOX_ARTGO Choline oxidase OS=Arthrobacter globiformis GN=codA PE=1 SV=1
Length = 546
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 139/357 (38%), Gaps = 68/357 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
TLL +++F + V + A G HR +N E+++S GA+ +P+
Sbjct: 224 FTLLTGLRARQLVFDADRRCTGVD---IVDSAFGHTHRLTARN----EVVLSTGAIDTPK 276
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
LLMLSG H I V++D P VG+ + D+P + + P+ Q I F
Sbjct: 277 LLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWWEIGIF 336
Query: 225 GSYIEAASGENFAGGSPSPRDYGMFSPKIG-QLSKVPPKQRTPEAIAEAIENMKALDDPA 283
+P + G+ P + VP T EN
Sbjct: 337 -----------------TPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTEN-------- 371
Query: 284 FRGGFILE-KVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPE--DLQRCVQGISTIEKII 340
GF L V S G + LR+R+ D P V YF +PE D++ V GI +I
Sbjct: 372 ---GFSLTPNVTHARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIA 428
Query: 341 ESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQV 400
+ +++ +S + + L+ + R T T++H G ++
Sbjct: 429 AQPAMAEWTGRELSPGV---------------EAQTDEELQDYIRKTHNTVYHPVGTVRM 473
Query: 401 GKV------VDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 451
G V +D + +V GV LRV D S NP TVMM+G I S R
Sbjct: 474 GAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 96/360 (26%), Positives = 147/360 (40%), Gaps = 69/360 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG A +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKALDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADCKTD---------KELDAFVRARAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 95/359 (26%), Positives = 147/359 (40%), Gaps = 67/359 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA ++LF K +A VA+ R + A A + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFDGK-RASGVAY---LRGSERATAHA------RREVLVCSGAIASPQ 266
Query: 173 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 212
LL SG +I +VLD P VGQ + D+ I PV +
Sbjct: 267 LLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPK 326
Query: 213 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 272
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 273 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 332
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRDA 428
Query: 333 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 392
I +I+ + +++ + N A + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRYRGREL------NPGADC---------RSDKELDTFVRARAETAF 473
Query: 393 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
H C++G VVD + +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDDEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 126/315 (40%), Gaps = 55/315 (17%)
Query: 158 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 209
+ E+IV+A ++ SP++LMLSG + I VV D+P VG+ + D+ I S
Sbjct: 244 RREVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADRPGVGRNLQDHMELYIQQESTK 303
Query: 210 PVEVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDY----------GMFSPKIGQLSKV 259
P+ ++ + + F + A F G + + G+ P I Q +
Sbjct: 304 PITLNSV----LNPFSKALIGAQWLFFKSGLGATNHFEAAAFVRSRAGVDYPDI-QYHFI 358
Query: 260 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 319
P R A +A P M S G + LR+ +P P + FNY
Sbjct: 359 PAAVRYDGKAAAKSHGFQAHVGP-----------MRSKSRGSVTLRSPDPKAKPVIRFNY 407
Query: 320 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 379
P+D I +I +F F+ + +S P + H +
Sbjct: 408 MSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEIS-----------PGS----HVQSDDD 452
Query: 380 LEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 433
L+ F RD + +H G C++G+ VVD + +V+GVD LRV D S F N
Sbjct: 453 LDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVTNGNLN 512
Query: 434 ATVMMLGRYMGVRIL 448
A +M G IL
Sbjct: 513 APSIMTGEKASDHIL 527
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 144/355 (40%), Gaps = 57/355 (16%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA+ ++LF K +A VA+ A+ + + E+++ AGA+ SPQ
Sbjct: 214 LKIITHATTDRILFENK-RAVGVAY---LHGASNTPQEVHARR----EVLLCAGAIASPQ 265
Query: 173 LLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQV------ 218
+L SG N I VV D P VG+ + D+ +++ VSL
Sbjct: 266 ILQRSGVGNAELLKQFDIPVVHDLPGVGENLQDHL--EMYLQYECKEPVSLYPALKWWNQ 323
Query: 219 --VGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENM 276
+G + + +F GG P I Q +P +A
Sbjct: 324 PKIGAEWLFNGTGIGASNHFEGGGFIRSREEFAWPNI-QYHFLP--------VAINYNGS 374
Query: 277 KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTI 336
A++ F+ M S GH+ +++R+P+ +P++ FNY +D Q I
Sbjct: 375 NAVEAHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRIT 431
Query: 337 EKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHG 396
+II + KF+ +S I L++F R+ T +H G
Sbjct: 432 RQIINQPALDKFRGREISPGI---------------DCQTDEQLDEFVRNHAETAYHPCG 476
Query: 397 GCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
C++G VVD + +V G++ LRV+D S N AT +M+G + I
Sbjct: 477 TCKMGSDEMAVVDDEGRVHGLEGLRVVDASIMPLIITGNLNATTIMIGEKIADNI 531
>sp|Q39A44|BETA_BURS3 Choline dehydrogenase OS=Burkholderia sp. (strain 383) GN=betA PE=3
SV=1
Length = 566
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 148/364 (40%), Gaps = 69/364 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD ++ P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
Query: 448 LSER 451
+
Sbjct: 533 RGRK 536
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 148/363 (40%), Gaps = 67/363 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 212
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 213 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 272
+ L ++ T G AS AGG RD ++ P I Q +P +A
Sbjct: 327 IGLDWMINGTGLG-----ASNHFEAGGFIRTRDDDLW-PNI-QYHFLP--------VAIN 371
Query: 273 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 332
A++ F+ M S G ++L++R+PN +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPNAHPSILFNYMAEALDWREFRDA 428
Query: 333 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 392
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMHQPALDRFRGRELN-----------PGADL----KSDNELDAFVRARAETAF 473
Query: 393 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448
H C++G VVD++ +V G+D LRV+D S N A +M+ + +I
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKIR 533
Query: 449 SER 451
+
Sbjct: 534 KRK 536
>sp|A0B2F7|BETA_BURCH Choline dehydrogenase OS=Burkholderia cenocepacia (strain HI2424)
GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 146/360 (40%), Gaps = 69/360 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q1BQE2|BETA_BURCA Choline dehydrogenase OS=Burkholderia cenocepacia (strain AU 1054)
GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 146/360 (40%), Gaps = 69/360 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|B1K707|BETA_BURCC Choline dehydrogenase OS=Burkholderia cenocepacia (strain MC0-3)
GN=betA PE=3 SV=1
Length = 566
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 95/360 (26%), Positives = 146/360 (40%), Gaps = 69/360 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERATAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG +I VVLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPVVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PND+PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNDHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDAFVRARAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G+D LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 187/463 (40%), Gaps = 81/463 (17%)
Query: 11 WEVAVASMPASTHALLLIMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVG 70
WE A A L + ++R +Y + +A + + + V+ G
Sbjct: 104 WEQAGGEYWGWKRAFALFKKLEHNQRFDKSNYHGTDGELAVSD--LKDLNPLSKSFVQAG 161
Query: 71 V---LPYNG-FTYDHMYGTKIGGTIFDQNGQRHTAA-----DLLEYANPSGLTLLLHASV 121
+ + +NG F H G + ++GQR ++A D+++ N L ++ A
Sbjct: 162 MEAKISFNGDFNGAHQEGVGFY-QVTQKHGQRWSSARAFLHDVIDRPN---LDIITEAHA 217
Query: 122 HKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGA-- 179
KVLF + A GV + + +K E+I+S GA+ +PQLLMLSG
Sbjct: 218 TKVLFEDRK-----AVGVSYIQKNMHQQ---VKTTDSGEVILSLGAVNTPQLLMLSGVGA 269
Query: 180 ------HNITVVLDQPLVGQGMSDNP----MNAIFVPSPVPVEVSLIQVVGITQFGSYIE 229
H I +V D P VG+ + D+ M A +P+ V S I G+ SYI
Sbjct: 270 AAELKEHGIALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIPR-GLVGLFSYIF 328
Query: 230 AASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDP----AFR 285
G + + S G K P++ P + L D A
Sbjct: 329 KRKGFLTSNVAES-----------GGFVKSSPERDRPNLQFHFLPTY--LKDHGRKIAVG 375
Query: 286 GGFILEKV-MGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKS 344
G+ L + P S G + L++ NP D+P + NY +PED++ + GI I ++ S
Sbjct: 376 YGYTLHICDLLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPS 435
Query: 345 FSK-FKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFC---RDTVMTIWHYHGGCQV 400
+K FK E + P A TS ++ R TI+H G C++
Sbjct: 436 MAKHFKREIVPGP-------------------AVTSDDEIVADIRSRAETIYHPVGTCRM 476
Query: 401 GK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 439
GK VVD +V G+ +RV+D S N A +M+
Sbjct: 477 GKDPASVVDPCLQVRGLRNIRVVDASIMPNLVAGNTNAPTIMI 519
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/383 (25%), Positives = 155/383 (40%), Gaps = 66/383 (17%)
Query: 90 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVF-----RD 143
T+ Q + TA L+ A LT++ HA+ ++LF K A GV + D
Sbjct: 192 TVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFDGK-----RASGVSYLIGNAND 246
Query: 144 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGM 195
AT A+ R E+++ AGA+ SPQ+L SG +I +V + P VGQ +
Sbjct: 247 ATEARAR--------REVLLCAGAIASPQILQRSGVGPAALLRELDIALVHELPGVGQNL 298
Query: 196 SDNPMNAIFVPSPVPVEV----SLIQVVGITQ---FGSYIEAASGENFAGGSPSPRDYGM 248
D+ + PV + L+ GI F AS + AGG R
Sbjct: 299 QDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQFEAGGFIRTRPEFA 358
Query: 249 FSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRN 308
+ P I Q +P +A A+++ F+ M S G ++L++++
Sbjct: 359 W-PNI-QFHFLP--------VAINYNGSNAVNEHGFQAHV---GSMRSPSRGRIQLKSKD 405
Query: 309 PNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVN 368
P +PS+ FNY +D Q I +I+ + ++ +S I
Sbjct: 406 PRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGI----------- 454
Query: 369 LLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTF 424
+ L+ F R+ T +H C++G+ VVD +V GV LRV+D S
Sbjct: 455 ----DCQSDAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASIM 510
Query: 425 YYSPGTNPQATVMMLGRYMGVRI 447
N AT +M+ + RI
Sbjct: 511 PEIITGNLNATTIMMAEKIADRI 533
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 151/374 (40%), Gaps = 56/374 (14%)
Query: 90 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A LT++ HA +LF +GK A GV + +
Sbjct: 190 TVTPQGRRASTARGYLDQAKGRPNLTIITHALTDHILF--EGKK---ASGVEWLEGDSTI 244
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 200
+ + E+++ AGA+ SPQ+L SG A +I +V P VG+ + D+
Sbjct: 245 PTRAMA---RKEVLLCAGAIASPQILQRSGVGDASLLKAFDIPLVHHLPGVGENLQDHLE 301
Query: 201 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 253
+ PV + + ++ FG AS AGG R FS
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFI--RSSEAFSWPN 359
Query: 254 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 313
Q +P +A A+ + F+ M S GH+ +++R+P ++P
Sbjct: 360 IQYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVHIKSRDPREHP 408
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
++ FNY +D Q I +II + K++ +S I
Sbjct: 409 AILFNYMSTGQDWQEFRDAIRITREIINQPALDKYRGREISPGITC-------------- 454
Query: 374 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 429
L+ F RD T +H G C++G VVD + +V GV+ LRV+D S
Sbjct: 455 -QTDEQLDAFVRDHAETAFHPCGTCKMGYDEMAVVDGEGRVHGVENLRVVDASIMPQIIT 513
Query: 430 TNPQATVMMLGRYM 443
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 60/334 (17%)
Query: 119 ASVHKVLFR--IKGKARPVAHGVVFRDATGAKHRAYLKNGPKN------EIIVSAGALGS 170
A +H VL R ++ + + + V+F + T A Y+K+G ++ E+I+S GA+ S
Sbjct: 245 AYLHPVLSRPNLRAEVQTLVSRVLF-EGTRAVGVEYIKDGQRHKAYVSREVILSGGAINS 303
Query: 171 PQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ----- 217
PQLLMLSG N I VV P VGQ + D+ + P+ + Q
Sbjct: 304 PQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLHSAQKPLRK 363
Query: 218 -VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIEN 275
+G+ SY + A+ GG R G+ P I Q +P ++ I++
Sbjct: 364 VCIGLEWLWSYTGDGATAHLETGGFIRSRP-GVPHPDI-QFHFLP---------SQVIDH 412
Query: 276 -MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGIS 334
K A++ + M S G L+LR+ NP D+P + NY D++ Q +
Sbjct: 413 GRKPTQQEAYQ---VHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVR 469
Query: 335 TIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHY 394
+I ++ + F+ + + P + H + ++ F R + +H
Sbjct: 470 LSREIFAQEALAPFRGKELQ-----------PGS----HVQSDKEIDAFVRAKADSAYHP 514
Query: 395 HGGCQVGK------VVDHDYKVLGVDALRVIDGS 422
C++G+ VVD KV+GV+ LRV+D S
Sbjct: 515 SCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDAS 548
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 133/316 (42%), Gaps = 55/316 (17%)
Query: 146 GAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSD 197
G H+AY+ E+I+S GA+ SPQLLMLSG N I VV P VGQ + D
Sbjct: 286 GQSHKAYVSR----EVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQD 341
Query: 198 NPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EAASGENFAGGSPSPRDYGMFS 250
+ I P+ + Q +G+ + + A+ GG R G+
Sbjct: 342 HLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRP-GVPH 400
Query: 251 PKIGQLSKVPPKQRTPEAIAEAIEN-MKALDDPAFRGGFILEKVMGPVSTGHLELRTRNP 309
P I Q +P ++ I++ K A++ + M S G L+LR+ NP
Sbjct: 401 PDI-QFHFLP---------SQVIDHGRKPTQQEAYQ---VHVGTMRATSVGWLKLRSTNP 447
Query: 310 NDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNL 369
D+P + NY D++ Q + +I ++F+ F+ + + P +
Sbjct: 448 QDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQ-----------PGS- 495
Query: 370 LPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGST 423
H + ++ F R + +H C++G+ VVD +V+GV+ LRVID S
Sbjct: 496 ---HVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASI 552
Query: 424 FYYSPGTNPQATVMML 439
N A +M+
Sbjct: 553 MPSVVSGNLNAPTIMI 568
>sp|A6T613|BETA_KLEP7 Choline dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae
(strain ATCC 700721 / MGH 78578) GN=betA PE=3 SV=1
Length = 554
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/374 (25%), Positives = 151/374 (40%), Gaps = 56/374 (14%)
Query: 90 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A LT+ HA ++F A A GV + +
Sbjct: 190 TVTPQGRRASTARGYLDQARGRPNLTIRTHALTDHIIF-----AGKRAVGVEWLEGESTI 244
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 200
N E+++ AGA+ SPQ+L SG N I VV D P VG+ + D+
Sbjct: 245 PSKATAN---KEVLLCAGAIASPQILQRSGVGNPELLRQFDIPVVHDLPGVGENLQDHLE 301
Query: 201 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 253
+ PV + + ++ FG AS + AGG R + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGIGASNQFEAGGFIRSRAEFAW-PNI 360
Query: 254 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 313
Q +P +A A+ + F+ M S GH+ L++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRLKSRDPHAHP 408
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
++ FNY +D Q I +I+ + K++ +S I
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMNQPALDKYRGREISPGI---------------E 453
Query: 374 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 429
+ L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQSDAELDEFVRNHAETAFHPCGTCKMGYDEMAVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 430 TNPQATVMMLGRYM 443
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 158/375 (42%), Gaps = 61/375 (16%)
Query: 95 NGQR-HTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 152
NG+R TA L+ A LT++ HA +VLF K A GV + H
Sbjct: 197 NGRRASTARGYLDRAKTRPNLTIVTHAVTDRVLFSGK-----RAVGVAY-----LHHGNA 246
Query: 153 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 204
+ + E++V +GA+ SPQLL SG ++ +V D P VG+ + D+ I
Sbjct: 247 VNAQARREVLVCSGAIASPQLLQRSGVGRSTWLRELDVPLVHDLPGVGENLQDHLEMYIQ 306
Query: 205 VPSPVPVEV-SLIQ-----VVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQL 256
P+ + +Q +G+ G+ I AS + AGG RD ++ P I Q
Sbjct: 307 YECKEPISLYPALQWWNQPAIGLEWMLKGTGI-GASNQFEAGGFIRTRDDDLW-PNI-QY 363
Query: 257 SKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVT 316
+P +A A+ F+ M S G ++L +R+PN +PS+
Sbjct: 364 HFLP--------VAINYNGSNAIKMHGFQAHV---GSMRSPSRGRVKLTSRDPNAHPSIL 412
Query: 317 FNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 376
FNY +P D + GI +I+ + +++ ++ P L
Sbjct: 413 FNYMADPLDWREFRDGIRITREIMRQPALDRYRGRELN-----------PGAEL----TT 457
Query: 377 STSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNP 432
L+ F R T +H C++G VVD++ +V G++ALRV+D S N
Sbjct: 458 DEQLDTFVRMRAETAFHPSCSCKMGYDDMAVVDNEGRVHGMEALRVVDASIMPRITTGNL 517
Query: 433 QATVMMLGRYMGVRI 447
A +ML + RI
Sbjct: 518 NAPTIMLAEKIADRI 532
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/383 (25%), Positives = 157/383 (40%), Gaps = 68/383 (17%)
Query: 94 QNGQRHTAAD-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 152
NG+R +AA+ L+ A G L++ KV+ G+A V R T +R
Sbjct: 188 HNGRRWSAANAYLKPALKRGNVTLVNGFARKVIIE-NGRAVGVEIERRGRVETVKANR-- 244
Query: 153 LKNGPKNEIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIF 204
E+IVSA + SP+LLMLSG AH I V D+P VG + D+ M F
Sbjct: 245 -------EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADRPGVGANLQDH-MEFYF 296
Query: 205 VPSPVPVEVSLIQVVGITQFGSYIEAASGENF---AGGSPSPRDYGMFSPKIGQLSKVPP 261
+VS V + + + +G + GG + + + + P
Sbjct: 297 Q------QVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQF-----EACAFLRSAP 345
Query: 262 KQRTPE------AIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNP 313
+ P+ +A + + A F+ G+ L K S G++ LR+ +P+D+P
Sbjct: 346 GLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSK-----SRGNVTLRSADPHDDP 400
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
+ FNY PED ++ + +I K+F F+ P +
Sbjct: 401 VIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFR---------------GPEIQPGEN 445
Query: 374 SNASTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYS 427
++ F R+ + + +H G C++G VVD + +V+GV+ LRV D S F +
Sbjct: 446 IETDEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHV 505
Query: 428 PGTNPQATVMMLGRYMGVRILSE 450
N +M G IL +
Sbjct: 506 TYGNLNGPSIMTGEKAADHILGK 528
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 147/364 (40%), Gaps = 48/364 (13%)
Query: 100 TAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 158
TA L+ A P GL ++ HA+ ++LF GK H +V + G A +
Sbjct: 202 TARGYLDMAKPRDGLHIVTHATTDRILF--AGKRAIGVHYLVGNSSEGIDAHA------R 253
Query: 159 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 210
E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+ +++
Sbjct: 254 REVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL--EVYIQYACT 311
Query: 211 VEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPE 267
VSL + Q+ + + FAG G+ + + G F + + P Q
Sbjct: 312 KPVSLYPAL---QWWNQPAIGAQWLFAGTGTGASNQFEAGGFI-RTREEFDWPNIQYHFL 367
Query: 268 AIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQ 327
+A A+ + F+ M S G + ++R+P +PS+ FNY +D Q
Sbjct: 368 PVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHAKSRDPRQHPSILFNYQSTDQDWQ 424
Query: 328 RCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDT 387
I +II + ++ +S A L+ F R
Sbjct: 425 EFRDAIRITREIIAQPALDAYRGREISPSADCKTDA---------------ELDAFVRSR 469
Query: 388 VMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 443
T +H C +G VVD +V G++ LRVID S N AT +M+ +
Sbjct: 470 AETAYHPSCSCAMGTDAMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTIMIAEKI 529
Query: 444 GVRI 447
R+
Sbjct: 530 ADRV 533
>sp|Q62CH8|BETA_BURMA Choline dehydrogenase OS=Burkholderia mallei (strain ATCC 23344)
GN=betA PE=3 SV=1
Length = 565
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 67/363 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 212
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 213 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 272
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 273 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 332
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSCGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 333 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 392
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 393 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIR 533
Query: 449 SER 451
+
Sbjct: 534 KHK 536
>sp|Q3JLL7|BETA_BURP1 Choline dehydrogenase OS=Burkholderia pseudomallei (strain 1710b)
GN=betA PE=3 SV=1
Length = 565
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 67/363 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 212
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 213 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 272
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 273 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 332
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 333 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 392
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 393 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIR 533
Query: 449 SER 451
+
Sbjct: 534 KHK 536
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 147/363 (40%), Gaps = 67/363 (18%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
L ++ HA ++LF K A GV F + A + + E++V +GA+ SPQ
Sbjct: 217 LEIVTHALADRILFSGK-----RATGVTFLHGS-----ARVTAHARREVLVCSGAIASPQ 266
Query: 173 LLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------E 212
LL SG +I VVLD P VG+ + D+ I PV +
Sbjct: 267 LLQRSGVGPGEWLRELDIPVVLDLPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPK 326
Query: 213 VSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEA 272
+ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 327 IGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAIN 371
Query: 273 IENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQG 332
A++ F+ M S G ++L++R+P+ +PS+ FNY E D +
Sbjct: 372 YNGSNAIEMHGFQAHV---GSMRSPSRGRVKLKSRDPHAHPSILFNYMAEALDWREFRDA 428
Query: 333 ISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIW 392
I +I+ + +F+ ++ P L + L+ F R T +
Sbjct: 429 IRATREIMRQPALDRFRGRELN-----------PGADL----KSDNELDTFVRARAETAF 473
Query: 393 HYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448
H C++G VVD++ +V G+D LRV+D S N A +M+ + RI
Sbjct: 474 HPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITTGNLNAPTIMIAEKIADRIR 533
Query: 449 SER 451
+
Sbjct: 534 QHK 536
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 92/364 (25%), Positives = 147/364 (40%), Gaps = 48/364 (13%)
Query: 100 TAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 158
TA L+ A P GL ++ HA+ ++LF GK H +V + G A +
Sbjct: 202 TARGYLDMAKPRDGLHIVTHATTDRILF--AGKRAIGVHYLVGNSSEGIDAHA------R 253
Query: 159 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 210
E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+ +++
Sbjct: 254 REVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL--EVYIQYACT 311
Query: 211 VEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPE 267
VSL + Q+ + + FAG G+ + + G F + + P Q
Sbjct: 312 KPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEFDWPNIQYHFL 367
Query: 268 AIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQ 327
+A A+ + F+ M S G + ++R+P +PS+ FNY +D Q
Sbjct: 368 PVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHAKSRDPRQHPSILFNYQSTDQDWQ 424
Query: 328 RCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDT 387
I +II + ++ +S A L+ F R
Sbjct: 425 EFRDAIRITREIIAQPALDPYRGREISPSADCKTDA---------------ELDAFVRSR 469
Query: 388 VMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 443
T +H C +G VVD +V G++ LRVID S N AT +M+ +
Sbjct: 470 AETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLNATTIMIAEKI 529
Query: 444 GVRI 447
R+
Sbjct: 530 ADRM 533
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 53/372 (14%)
Query: 95 NGQRHTAAD--LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 152
NG+R + A L E S LT++ HA ++LF K +A VA+ V D T + RA
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RAVGVAYLVGDSD-TRIQARA- 254
Query: 153 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 204
+ E+++ GA+ SPQ+L SG +I VV D P VGQ + D+ +
Sbjct: 255 -----RKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQ 309
Query: 205 VPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKV 259
PV + + + A G F G G+ + + G F + + +
Sbjct: 310 YACTQPVSL-------YPSLKWWNQPAIGAKWMFLGTGIGASNQFEAGGFI-RSSEAFEW 361
Query: 260 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 319
P Q +A K + + F+ M S G +++++++P + PS+ FNY
Sbjct: 362 PNIQYHFLPVAINYNGTKGVQEHGFQAHV---GSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 320 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 379
+D Q GI +I++ + ++ +S I V + +
Sbjct: 419 MSSEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV---------------QSDEA 463
Query: 380 LEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 435
L+QF R+ T +H C++G VVD +V G+ +LRV+D S N A
Sbjct: 464 LDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAP 523
Query: 436 VMMLGRYMGVRI 447
+M+ + +I
Sbjct: 524 TIMIAEKIADKI 535
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 53/372 (14%)
Query: 95 NGQRHTAAD--LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAY 152
NG+R + A L E S LT++ HA ++LF K +A VA+ V D T + RA
Sbjct: 198 NGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RAVGVAYLVGDSD-TRIQARA- 254
Query: 153 LKNGPKNEIIVSAGALGSPQLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIF 204
+ E+++ GA+ SPQ+L SG +I VV D P VGQ + D+ +
Sbjct: 255 -----RKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPVVHDLPGVGQNLQDHLEMYLQ 309
Query: 205 VPSPVPVEVSLIQVVGITQFGSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKV 259
PV + + + A G F G G+ + + G F + + +
Sbjct: 310 YACTQPVSL-------YPSLKWWNQPAIGAEWMFLGTGIGASNQFEAGGFI-RSSEAFEW 361
Query: 260 PPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNY 319
P Q +A K + + F+ M S G +++++++P + PS+ FNY
Sbjct: 362 PNIQYHFLPVAINYNGTKGVQEHGFQAHV---GSMRSPSRGRVQVKSKDPREYPSILFNY 418
Query: 320 FKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTS 379
+D Q GI +I++ + ++ +S I V + +
Sbjct: 419 MASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV---------------QSDEA 463
Query: 380 LEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQAT 435
L+QF R+ T +H C++G VVD +V G+ +LRV+D S N A
Sbjct: 464 LDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDASIMPIITTGNLNAP 523
Query: 436 VMMLGRYMGVRI 447
+M+ + +I
Sbjct: 524 TIMIAEKIADKI 535
>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=betA PE=3 SV=1
Length = 567
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 153/368 (41%), Gaps = 56/368 (15%)
Query: 100 TAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPK 158
TA L+ A S LT++ HA K+LF K A GV + + + ++ +
Sbjct: 202 TARGYLDTAKKRSTLTIVTHALTDKILFEGK-----RAVGVSYLQGSTEER---VEARAR 253
Query: 159 NEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVP 210
E+IVS+GA+ SPQLL SG + +I VV D P VG+ + D+ + P
Sbjct: 254 KEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHLELYLQYACTQP 313
Query: 211 VEV--SLIQ----VVGITQ-FGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQ 263
V + SL+ +G F AS + AGG R+ + P I Q +P
Sbjct: 314 VSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRTREEFEW-PNI-QYHFLP--- 368
Query: 264 RTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 323
+A + + F+ M S G ++L++++P +PS+ FNY
Sbjct: 369 -----VAINYNGSNGVKEHGFQAHM---GSMRSPSRGRVQLKSKDPRQHPSILFNYMATE 420
Query: 324 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQF 383
+D Q GI +I++ + F+ +S I V L++F
Sbjct: 421 QDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEV---------------QTDEQLDKF 465
Query: 384 CRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 439
R+ T +H C++G VVD +V G+ LRV+D S N A +M+
Sbjct: 466 VREHAETAFHPSCSCKMGTDDMAVVDGQGRVHGMQGLRVVDASIMPIITTGNLNAPTIMM 525
Query: 440 GRYMGVRI 447
+ +I
Sbjct: 526 AEKIADKI 533
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 110/457 (24%), Positives = 188/457 (41%), Gaps = 69/457 (15%)
Query: 11 WEVAVASMPASTHALLLIMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVG 70
WE A AL L + ++R + V+ +A ++ + + V+ G
Sbjct: 104 WEQAAGRYWGWYRALELFKRLECNQRFDKSEHHGVDGELAVSD--LKYINPLSKAFVQAG 161
Query: 71 V---LPYNGFTYDHMYGTKIGG-TIFDQNGQRHTAADLLEYANPS--GLTLLLHASVHKV 124
+ + +NG ++ Y +G + +NGQR ++A + S L ++ A K+
Sbjct: 162 MEANINFNG-DFNGEYQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKI 220
Query: 125 LFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSGA----- 179
LF + A GV + H+ +G E+++S GA+G+P LLMLSG
Sbjct: 221 LFEDRK-----AVGVSYIKKN-MHHQVKTTSG--GEVLLSLGAVGTPHLLMLSGVGAAAE 272
Query: 180 ---HNITVVLDQPLVGQGMSDNP----MNAIFVPSPVPVEVSLIQVVGITQFGSYIEAAS 232
H +++V D P VG+ + D+ M A P+ V +S I G++ SY+
Sbjct: 273 LKEHGVSLVHDLPEVGKNLQDHLDITLMCAANSREPIGVALSFIPR-GVSGLFSYVFKRE 331
Query: 233 GENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGF---- 288
G + + S G K P + P + GG+
Sbjct: 332 GFLTSNVAES-----------GGFVKSSPDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTL 380
Query: 289 -ILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK 347
I + + P S G + L++ NP P + NY + ED++ + GI I+++ S +K
Sbjct: 381 HICDLL--PKSRGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQAPSMAK 438
Query: 348 -FKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK---- 402
FK+E VP T + + R + TI+H G C++GK
Sbjct: 439 HFKHE--VVPGQAVKTDDEIIEDIRRRAE--------------TIYHPVGTCRMGKDPAS 482
Query: 403 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMML 439
VVD K+ G+ +RV+D S + N A +M+
Sbjct: 483 VVDPCLKIRGLANIRVVDASIMPHLVAGNTNAPTIMI 519
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 225 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 279
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 280 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 339
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 340 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 399
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 400 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 225 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 279
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 280 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 339
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 340 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 399
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 400 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 225 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 279
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 280 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 339
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 340 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 399
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 400 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 225 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 279
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 280 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 339
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 340 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 399
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 400 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 50/352 (14%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172
LT+L HA+ +K+LF K A GV + GA + K E+++ AGA+ SPQ
Sbjct: 217 LTILTHATTNKILFNQK-----QAIGVEY--IIGADQNNLQRALVKREVLLCAGAIASPQ 269
Query: 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQF 224
+L SG + +I VV D P VG+ + D+ +++ VSL +
Sbjct: 270 ILQRSGVGQSTFLKSMDIDVVHDLPGVGENLQDHL--EMYLQYKCKQPVSLYPALKW--- 324
Query: 225 GSYIEAASGEN--FAG---GSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKAL 279
Y + A G F G G+ + + G F + K P Q +A A+
Sbjct: 325 --YNQPAIGAEWLFNGTGIGASNQFEAGGFIRSSDEF-KWPNIQYHFLPVAINYNGSNAV 381
Query: 280 DDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKI 339
+ F+ M S G ++L++++P +PS+ FNY +D + I +I
Sbjct: 382 KEHGFQAHV---GSMRSPSRGRIKLKSKDPFAHPSILFNYMSTEQDWREFRDAIRITREI 438
Query: 340 IESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQ 399
+ + ++ + +S +H L+ F R+ T +H C+
Sbjct: 439 MHQPALDPYRGDEISP---------------GKHLQTDAELDDFVRNHAETAYHPSCSCK 483
Query: 400 VGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+G+ VVD +V G++ LRV+D S N AT +M+ + +I
Sbjct: 484 MGEDEMAVVDGQGRVHGMNGLRVVDASIMPLIITGNLNATTIMIAEKIADQI 535
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 90 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A LT+ HA ++F K R V + D+T
Sbjct: 190 TVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK---RAVGVEWLEGDSTIPT 246
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 200
K E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+
Sbjct: 247 RATANK-----EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLE 301
Query: 201 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 253
+ PV + + ++ FG AS AGG R+ + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI 360
Query: 254 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 313
Q +P +A A+ + F+ M S GH+ +++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHP 408
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
++ FNY +D Q I +I+ + +++ +S
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------E 453
Query: 374 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 429
L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 430 TNPQATVMMLGRYM 443
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 90 TIFDQNGQRHTAADLLEYANPS-GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A LT+ HA ++F K R V + D+T
Sbjct: 190 TVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK---RAVGVEWLEGDSTIPT 246
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSGAHN--------ITVVLDQPLVGQGMSDNPM 200
K E+++ AGA+ SPQ+L SG N I +V D P VG+ + D+
Sbjct: 247 RATANK-----EVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLPGVGENLQDHLE 301
Query: 201 NAIFVPSPVPVEV-------SLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKI 253
+ PV + + ++ FG AS AGG R+ + P I
Sbjct: 302 MYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIRSREEFAW-PNI 360
Query: 254 GQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNP 313
Q +P +A A+ + F+ M S GH+ +++R+P+ +P
Sbjct: 361 -QYHFLP--------VAINYNGSNAVKEHGFQ---CHVGSMRSPSRGHVRIKSRDPHQHP 408
Query: 314 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRH 373
++ FNY +D Q I +I+ + +++ +S
Sbjct: 409 AILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------E 453
Query: 374 SNASTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPG 429
L++F R+ T +H G C++G VVD + +V G++ LRV+D S
Sbjct: 454 CQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIIT 513
Query: 430 TNPQATVMMLGRYM 443
N AT +M+G M
Sbjct: 514 GNLNATTIMIGEKM 527
>sp|B1Z034|BETA_BURA4 Choline dehydrogenase OS=Burkholderia ambifaria (strain MC40-6)
GN=betA PE=3 SV=1
Length = 566
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 145/360 (40%), Gaps = 69/360 (19%)
Query: 113 LTLLLHASVHKVLFRIKGKARPVAHGVVF-RDATGAKHRAYLKNGPKNEIIVSAGALGSP 171
L ++ HA ++LF K A GV + R + A A + E++V +GA+ SP
Sbjct: 217 LEIVTHALADRILFDGK-----RASGVTYLRGSERANAHA------RREVLVCSGAIASP 265
Query: 172 QLLMLSGAH--------NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------ 211
QLL SG +I +VLD P VGQ + D+ I PV
Sbjct: 266 QLLQRSGVGPGAWLKELDIPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQP 325
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAE 271
++ L ++ T G AS AGG RD + P I Q +P +A
Sbjct: 326 KIGLEWMLNGTGLG-----ASNHFEAGGFIRTRDDDPW-PNI-QYHFLP--------VAI 370
Query: 272 AIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQ 331
A++ F+ M S G ++LR+R+PN +PS+ FNY E D +
Sbjct: 371 NYNGSNAIEMHGFQAHV---GSMRSPSRGRVKLRSRDPNAHPSILFNYMAEALDWREFRD 427
Query: 332 GISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTI 391
I +I+ + +++ + N A + L+ F R T
Sbjct: 428 AIRATREIMRQPALDRYRGREL------NPGADC---------KSDKELDTFVRSRAETA 472
Query: 392 WHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRI 447
+H C++G VVD + +V G++ LRV+D S N A +M+ + +I
Sbjct: 473 FHPSCSCKMGYDDMAVVDEEGRVHGLEGLRVVDASIMPIITTGNLNAPTIMIAEKIADKI 532
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 126/314 (40%), Gaps = 51/314 (16%)
Query: 160 EIIVSAGALGSPQLLMLSG----AH----NITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 211
E+IVSA + SP+LLMLSG AH I V +D+P VGQ + D+ S PV
Sbjct: 245 EVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDRPGVGQNLQDHMEFYFQQISTKPV 304
Query: 212 EVSLIQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPE---- 267
+ + F + A F G + + + P + P+
Sbjct: 305 SL----YSWLPWFWQGVAGAQWLFFKSGLGISNQF-----EACAFLRSAPGVKQPDIQYH 355
Query: 268 --AIAEAIENMKALDDPAFRG--GFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 323
+A + A + F+ G+ L K S G + LR +P +P + FNY P
Sbjct: 356 FLPVAIRYDGKAAANTHGFQVHVGYNLSK-----SRGSVTLRASDPKADPVIRFNYMSHP 410
Query: 324 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQF 383
ED ++ + +I K+F +++ P ++ F
Sbjct: 411 EDWEKFRHCVRLTREIFGQKAFDQYR---------------GPEIQPGERVQTDEEIDAF 455
Query: 384 CRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 437
R+ + + +H G C++G VVD + +V+GVD LRV D S F + N A +
Sbjct: 456 LREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVTYGNLNAPSI 515
Query: 438 MLGRYMGVRILSER 451
M G IL ++
Sbjct: 516 MTGEKAADHILGKQ 529
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 90 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 200
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 201 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 257
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 258 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 317
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 318 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 377
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 378 TSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 433
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 434 ATVMMLGRYMGVRI 447
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 90 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 200
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 201 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 257
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 258 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 317
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 318 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 377
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 378 TSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 433
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 434 ATVMMLGRYMGVRI 447
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/374 (25%), Positives = 150/374 (40%), Gaps = 48/374 (12%)
Query: 90 TIFDQNGQRHTAADLLEYANP-SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148
T+ Q + TA L+ A P L ++ HA+ ++LF GK H +V + G
Sbjct: 192 TVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILF--AGKRAVGVHYLVGNSSEGID 249
Query: 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPM 200
A + E++V AGA+ SPQLL SG A ++ +V D P VGQ + D+
Sbjct: 250 AHA------RREVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHDLPGVGQNLQDHL- 302
Query: 201 NAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAG---GSPSPRDYGMFSPKIGQLS 257
+++ VSL + Q+ + + FAG G+ + + G F + +
Sbjct: 303 -EVYMQYACTKPVSLYPAL---QWWNQPAIGAEWLFAGTGTGASNQFEAGGFI-RTREEF 357
Query: 258 KVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTF 317
P Q +A A+ + F+ M S G + R+R+P +PS+ F
Sbjct: 358 DWPNIQYHFLPVAINYNGSNAVKEHGFQAHV---GSMRTPSRGRVHARSRDPRQHPSILF 414
Query: 318 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNAS 377
NY +D Q I +II + ++ +S A
Sbjct: 415 NYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSADCKTDA-------------- 460
Query: 378 TSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQ 433
L+ F R T +H C +G VVD +V G++ LRVID S N
Sbjct: 461 -ELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIITGNLN 519
Query: 434 ATVMMLGRYMGVRI 447
AT +M+ + RI
Sbjct: 520 ATTIMIAEKIVDRI 533
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 48/322 (14%)
Query: 158 KNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 209
+ E+I++A ++ SP+LLMLSG H I VV D+P VGQ + D+ I
Sbjct: 243 RREVIIAASSINSPKLLMLSGIGPAAQLKEHGIEVVADRPGVGQNLQDHLEVYIQQECTQ 302
Query: 210 PVEV-SLIQVVGITQFGS---YIEAASG--ENFAGGSPSPRDYGMFSPKIGQLSKVPPKQ 263
P+ + S + + + G+ + + G +F + G+ P I Q +P
Sbjct: 303 PITLYSKLNLFSKAKIGAEWLFFKTGDGATNHFESAAFLRSKAGVEYPDI-QYHFLPVAI 361
Query: 264 RTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 323
R A +A P M S G + LR+ NP + P + FNY
Sbjct: 362 RYDGKAAAQSHGFQAHVGP-----------MRSKSRGSVTLRSANPREKPVIKFNYMSHE 410
Query: 324 EDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNASTSLEQF 383
+D + +I +F+ ++ + H + ++ F
Sbjct: 411 DDWADFRHCVRLTREIFGQAAFNPYRGAEIQPGA---------------HVQSDDEIDNF 455
Query: 384 CRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVM 437
++ V + +H G C++G VVD + +V+GV+ LRV D S F N +
Sbjct: 456 IKEHVESAFHPCGTCKMGAVDDPMAVVDAECRVIGVEGLRVADSSIFPRITNGNLNGPSI 515
Query: 438 MLGRYMGVRILSER-LASNDSK 458
M+G IL LA +D +
Sbjct: 516 MVGEKASDHILGRTPLARSDQE 537
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,521,687
Number of Sequences: 539616
Number of extensions: 8091015
Number of successful extensions: 18477
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 17968
Number of HSP's gapped (non-prelim): 349
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)