Query 012707
Match_columns 458
No_of_seqs 233 out of 1703
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238 Glucose dehydrogenase/ 100.0 3.6E-76 7.7E-81 597.3 31.6 413 14-457 145-622 (623)
2 PLN02785 Protein HOTHEAD 100.0 3.1E-74 6.8E-79 604.4 38.1 439 14-456 136-585 (587)
3 PRK02106 choline dehydrogenase 100.0 4.8E-66 1E-70 546.0 32.4 403 14-451 93-535 (560)
4 TIGR01810 betA choline dehydro 100.0 8.5E-66 1.8E-70 541.3 32.1 399 14-450 87-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 1.1E-59 2.4E-64 491.7 26.2 395 14-450 92-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 3E-44 6.6E-49 370.7 27.4 384 9-450 122-542 (544)
7 PF05199 GMC_oxred_C: GMC oxid 100.0 1.5E-35 3.3E-40 258.4 11.5 139 296-443 1-144 (144)
8 PF00732 GMC_oxred_N: GMC oxid 100.0 5.9E-31 1.3E-35 257.2 9.3 176 14-199 85-295 (296)
9 PRK12835 3-ketosteroid-delta-1 96.6 0.0058 1.2E-07 65.5 8.1 60 107-175 222-282 (584)
10 PRK12837 3-ketosteroid-delta-1 96.3 0.013 2.7E-07 62.0 8.4 58 108-175 184-242 (513)
11 PRK07843 3-ketosteroid-delta-1 96.2 0.017 3.6E-07 61.7 8.5 60 107-176 217-276 (557)
12 PRK12844 3-ketosteroid-delta-1 95.9 0.023 5E-07 60.6 8.2 55 107-171 217-271 (557)
13 PRK12839 hypothetical protein; 95.8 0.025 5.5E-07 60.4 7.8 55 107-170 223-277 (572)
14 PRK07121 hypothetical protein; 95.8 0.029 6.3E-07 58.9 8.2 60 107-175 186-246 (492)
15 PRK08274 tricarballylate dehyd 95.6 0.036 7.9E-07 57.7 8.0 61 107-177 140-200 (466)
16 PRK12845 3-ketosteroid-delta-1 95.4 0.045 9.8E-07 58.4 7.9 55 108-172 227-281 (564)
17 PF00890 FAD_binding_2: FAD bi 95.2 0.055 1.2E-06 55.4 7.5 58 108-176 151-209 (417)
18 KOG2404 Fumarate reductase, fl 94.9 0.03 6.6E-07 53.8 4.3 52 109-170 155-207 (477)
19 TIGR01813 flavo_cyto_c flavocy 94.9 0.066 1.4E-06 55.3 7.2 55 107-170 139-193 (439)
20 PRK06134 putative FAD-binding 94.8 0.089 1.9E-06 56.4 8.1 58 107-174 226-283 (581)
21 PRK05675 sdhA succinate dehydr 94.7 0.1 2.2E-06 55.8 8.1 55 107-170 135-190 (570)
22 PRK12843 putative FAD-binding 94.6 0.099 2.1E-06 56.1 7.8 56 106-171 229-284 (578)
23 PRK13977 myosin-cross-reactive 94.6 0.11 2.5E-06 54.7 8.0 59 107-169 235-293 (576)
24 TIGR01811 sdhA_Bsu succinate d 94.6 0.094 2E-06 56.5 7.6 52 110-170 145-197 (603)
25 PRK06263 sdhA succinate dehydr 94.5 0.11 2.4E-06 55.3 7.8 55 107-170 143-198 (543)
26 PRK09078 sdhA succinate dehydr 94.4 0.1 2.3E-06 56.1 7.5 54 108-170 159-213 (598)
27 PRK06175 L-aspartate oxidase; 94.2 0.15 3.3E-06 52.6 7.8 51 109-170 140-190 (433)
28 TIGR01816 sdhA_forward succina 94.1 0.13 2.9E-06 54.9 7.4 54 107-170 128-182 (565)
29 PRK07573 sdhA succinate dehydr 94.1 0.13 2.9E-06 55.7 7.4 53 108-170 180-233 (640)
30 PTZ00139 Succinate dehydrogena 93.8 0.16 3.4E-06 55.0 7.4 55 107-170 175-230 (617)
31 PRK08958 sdhA succinate dehydr 93.8 0.2 4.3E-06 53.8 8.1 54 108-170 153-207 (588)
32 PLN00128 Succinate dehydrogena 93.5 0.19 4.1E-06 54.4 7.2 54 108-170 197-251 (635)
33 PRK12842 putative succinate de 93.3 0.27 5.9E-06 52.7 8.2 57 108-174 224-280 (574)
34 PRK06452 sdhA succinate dehydr 93.3 0.24 5.2E-06 53.0 7.7 52 108-169 146-198 (566)
35 PRK06481 fumarate reductase fl 93.2 0.26 5.6E-06 52.0 7.6 59 107-175 199-258 (506)
36 PRK08275 putative oxidoreducta 92.9 0.28 6.1E-06 52.4 7.4 54 107-169 146-200 (554)
37 PTZ00306 NADH-dependent fumara 92.8 0.23 5.1E-06 57.6 7.2 57 110-171 559-622 (1167)
38 PRK07803 sdhA succinate dehydr 92.7 0.34 7.3E-06 52.5 7.8 49 112-170 165-214 (626)
39 PRK08641 sdhA succinate dehydr 92.7 0.3 6.5E-06 52.5 7.4 51 111-170 150-201 (589)
40 COG0029 NadB Aspartate oxidase 92.6 0.18 3.8E-06 51.7 5.0 54 107-169 143-196 (518)
41 PRK07395 L-aspartate oxidase; 92.3 0.2 4.3E-06 53.4 5.3 52 109-170 146-198 (553)
42 PRK09077 L-aspartate oxidase; 92.3 0.34 7.3E-06 51.5 7.1 58 108-170 149-208 (536)
43 PRK08626 fumarate reductase fl 92.2 0.34 7.4E-06 52.7 7.1 54 107-170 167-221 (657)
44 PLN02815 L-aspartate oxidase 92.2 0.29 6.2E-06 52.6 6.4 55 109-169 167-222 (594)
45 PRK12834 putative FAD-binding 92.2 0.36 7.7E-06 51.5 7.1 56 110-175 164-234 (549)
46 PRK07057 sdhA succinate dehydr 92.2 0.42 9E-06 51.5 7.6 54 108-170 158-212 (591)
47 TIGR01812 sdhA_frdA_Gneg succi 92.0 0.43 9.2E-06 51.1 7.5 53 108-170 139-192 (566)
48 PRK09231 fumarate reductase fl 91.7 0.58 1.3E-05 50.2 8.0 52 109-170 145-197 (582)
49 PF01266 DAO: FAD dependent ox 91.5 0.25 5.5E-06 48.7 4.9 69 94-178 139-211 (358)
50 TIGR01176 fum_red_Fp fumarate 91.5 0.53 1.2E-05 50.5 7.5 51 109-169 144-195 (580)
51 PRK08071 L-aspartate oxidase; 91.5 0.4 8.6E-06 50.6 6.4 50 111-170 142-191 (510)
52 PRK05945 sdhA succinate dehydr 91.5 0.57 1.2E-05 50.3 7.7 55 106-170 143-198 (575)
53 PRK08205 sdhA succinate dehydr 91.2 0.6 1.3E-05 50.2 7.5 54 107-169 149-206 (583)
54 PF06039 Mqo: Malate:quinone o 91.0 1.4 3E-05 45.2 9.3 64 104-178 187-252 (488)
55 TIGR03377 glycerol3P_GlpA glyc 90.5 0.89 1.9E-05 48.0 8.0 61 107-178 137-198 (516)
56 PLN02464 glycerol-3-phosphate 90.4 0.84 1.8E-05 49.4 7.8 63 106-178 240-304 (627)
57 PRK07512 L-aspartate oxidase; 89.8 0.57 1.2E-05 49.5 5.8 51 109-170 148-198 (513)
58 PRK06069 sdhA succinate dehydr 89.8 0.95 2.1E-05 48.6 7.5 51 109-169 149-200 (577)
59 PRK11101 glpA sn-glycerol-3-ph 89.7 1.1 2.3E-05 47.8 7.8 61 107-178 158-219 (546)
60 TIGR00551 nadB L-aspartate oxi 89.4 0.86 1.9E-05 47.8 6.7 50 110-170 141-190 (488)
61 PRK06854 adenylylsulfate reduc 89.3 1 2.2E-05 48.7 7.3 51 109-169 144-195 (608)
62 TIGR02061 aprA adenosine phosp 88.9 1.2 2.6E-05 48.0 7.5 50 111-169 139-191 (614)
63 PF13738 Pyr_redox_3: Pyridine 88.7 0.52 1.1E-05 42.7 4.1 59 104-177 87-146 (203)
64 PRK13800 putative oxidoreducta 87.8 1.5 3.2E-05 49.8 7.6 50 110-169 155-205 (897)
65 TIGR02485 CobZ_N-term precorri 87.6 1.5 3.2E-05 45.3 6.9 57 107-175 132-189 (432)
66 PRK07804 L-aspartate oxidase; 87.5 1.4 3.1E-05 46.8 7.0 55 107-170 153-211 (541)
67 TIGR03378 glycerol3P_GlpB glyc 87.4 1.5 3.2E-05 44.8 6.6 58 109-178 274-331 (419)
68 TIGR01320 mal_quin_oxido malat 85.1 4.7 0.0001 42.3 9.2 64 104-178 184-248 (483)
69 PTZ00383 malate:quinone oxidor 84.3 3.9 8.6E-05 42.9 8.2 51 112-178 231-281 (497)
70 PF01134 GIDA: Glucose inhibit 84.2 1.4 3E-05 44.5 4.6 53 107-174 105-157 (392)
71 COG0579 Predicted dehydrogenas 82.0 6.7 0.00015 40.2 8.5 61 104-178 159-219 (429)
72 PRK05329 anaerobic glycerol-3- 81.7 3.3 7.1E-05 42.6 6.3 55 107-173 268-322 (422)
73 PRK05257 malate:quinone oxidor 81.2 6.8 0.00015 41.2 8.5 58 110-178 196-254 (494)
74 TIGR02730 carot_isom carotene 80.9 3 6.5E-05 43.8 5.9 55 107-175 238-292 (493)
75 COG0578 GlpA Glycerol-3-phosph 80.8 3 6.5E-05 43.8 5.6 58 109-178 175-233 (532)
76 PRK04176 ribulose-1,5-biphosph 80.2 4 8.6E-05 38.9 5.9 52 107-167 113-171 (257)
77 TIGR02734 crtI_fam phytoene de 79.3 4.2 9E-05 42.7 6.3 54 108-175 229-282 (502)
78 TIGR02731 phytoene_desat phyto 79.1 3.8 8.3E-05 42.4 5.9 49 110-167 225-274 (453)
79 PRK13339 malate:quinone oxidor 78.9 9.2 0.0002 40.2 8.6 74 94-178 176-255 (497)
80 TIGR02733 desat_CrtD C-3',4' d 77.3 4.7 0.0001 42.2 6.0 56 109-174 243-299 (492)
81 PLN02661 Putative thiazole syn 75.8 6.9 0.00015 39.1 6.2 51 107-167 182-242 (357)
82 PF12831 FAD_oxidored: FAD dep 75.5 0.9 2E-05 46.8 0.0 58 107-178 99-156 (428)
83 PRK13369 glycerol-3-phosphate 75.1 7.9 0.00017 40.8 7.0 57 107-175 164-220 (502)
84 COG1053 SdhA Succinate dehydro 75.0 2.8 6.1E-05 44.6 3.6 79 109-201 150-241 (562)
85 PRK12266 glpD glycerol-3-phosp 74.4 9 0.0002 40.4 7.2 56 108-175 165-221 (508)
86 TIGR02352 thiamin_ThiO glycine 73.2 6.6 0.00014 38.4 5.6 47 106-167 145-191 (337)
87 PRK06185 hypothetical protein; 73.1 11 0.00024 38.2 7.3 49 109-168 120-168 (407)
88 PF06100 Strep_67kDa_ant: Stre 72.9 13 0.00029 38.6 7.6 58 107-168 216-273 (500)
89 PRK07208 hypothetical protein; 72.3 7.6 0.00017 40.4 6.0 56 110-174 230-285 (479)
90 TIGR02732 zeta_caro_desat caro 72.3 7.6 0.00016 40.6 6.0 61 109-175 230-290 (474)
91 PLN02487 zeta-carotene desatur 71.4 7.4 0.00016 41.6 5.7 61 108-174 305-365 (569)
92 TIGR03862 flavo_PP4765 unchara 71.0 22 0.00047 36.0 8.6 87 60-173 57-145 (376)
93 TIGR01373 soxB sarcosine oxida 70.8 11 0.00024 38.3 6.7 58 106-178 191-248 (407)
94 PRK00711 D-amino acid dehydrog 68.9 11 0.00024 38.3 6.2 54 106-175 209-262 (416)
95 PF03486 HI0933_like: HI0933-l 68.4 9.7 0.00021 38.9 5.6 55 104-172 115-169 (409)
96 KOG0042 Glycerol-3-phosphate d 67.5 3.5 7.6E-05 42.9 2.1 73 94-175 217-293 (680)
97 PRK12409 D-amino acid dehydrog 67.4 17 0.00037 36.9 7.3 59 105-175 204-263 (410)
98 PRK11728 hydroxyglutarate oxid 65.7 19 0.00042 36.3 7.3 55 107-178 158-212 (393)
99 COG2081 Predicted flavoprotein 65.5 32 0.00068 34.8 8.2 55 104-173 117-171 (408)
100 KOG2852 Possible oxidoreductas 64.4 10 0.00022 36.6 4.3 60 107-178 157-216 (380)
101 PRK05192 tRNA uridine 5-carbox 63.6 15 0.00033 39.5 6.0 47 109-170 112-158 (618)
102 PLN02985 squalene monooxygenas 63.3 23 0.00051 37.4 7.5 54 108-172 158-211 (514)
103 KOG4254 Phytoene desaturase [C 63.0 6.8 0.00015 40.0 3.1 53 105-171 271-323 (561)
104 TIGR03197 MnmC_Cterm tRNA U-34 63.0 21 0.00047 35.8 6.9 45 107-167 144-188 (381)
105 PLN02172 flavin-containing mon 62.8 15 0.00032 38.3 5.8 64 104-178 116-182 (461)
106 TIGR00136 gidA glucose-inhibit 62.5 15 0.00033 39.4 5.9 54 108-175 107-160 (617)
107 PF13434 K_oxygenase: L-lysine 61.3 15 0.00033 36.5 5.4 61 104-173 100-161 (341)
108 PRK15317 alkyl hydroperoxide r 60.9 27 0.00059 36.9 7.5 57 110-176 399-456 (517)
109 TIGR01292 TRX_reduct thioredox 60.7 34 0.00073 32.7 7.6 56 111-177 190-246 (300)
110 PRK11259 solA N-methyltryptoph 60.0 20 0.00043 35.8 6.0 51 107-174 158-208 (376)
111 COG3634 AhpF Alkyl hydroperoxi 59.1 22 0.00047 35.3 5.6 59 109-177 401-460 (520)
112 COG0445 GidA Flavin-dependent 57.7 6.8 0.00015 41.0 2.1 53 108-174 111-163 (621)
113 PRK08401 L-aspartate oxidase; 57.2 25 0.00054 36.6 6.4 49 400-449 310-364 (466)
114 COG1233 Phytoene dehydrogenase 55.1 16 0.00035 38.3 4.6 54 107-175 233-286 (487)
115 KOG1298 Squalene monooxygenase 55.1 13 0.00029 37.2 3.6 53 107-170 157-209 (509)
116 PRK06126 hypothetical protein; 54.8 33 0.00072 36.4 7.0 50 109-169 138-188 (545)
117 PRK07121 hypothetical protein; 53.7 20 0.00042 37.6 4.9 55 396-450 425-490 (492)
118 TIGR00292 thiazole biosynthesi 50.6 42 0.00091 31.8 6.2 61 109-177 111-179 (254)
119 PLN02612 phytoene desaturase 49.4 28 0.00061 37.3 5.3 45 110-167 320-364 (567)
120 PTZ00318 NADH dehydrogenase-li 48.9 32 0.0007 35.2 5.6 51 403-453 298-349 (424)
121 KOG1238 Glucose dehydrogenase/ 48.4 12 0.00025 40.1 2.1 68 82-149 219-289 (623)
122 TIGR03169 Nterm_to_SelD pyridi 48.1 32 0.00068 34.3 5.3 49 403-451 261-310 (364)
123 TIGR01377 soxA_mon sarcosine o 48.1 38 0.00083 33.7 5.9 52 107-175 154-205 (380)
124 TIGR03140 AhpF alkyl hydropero 47.1 57 0.0012 34.4 7.2 56 110-175 400-456 (515)
125 PRK10262 thioredoxin reductase 46.9 69 0.0015 31.2 7.4 58 107-174 194-253 (321)
126 TIGR02734 crtI_fam phytoene de 46.0 77 0.0017 33.2 8.0 39 409-451 454-492 (502)
127 PRK10157 putative oxidoreducta 45.5 63 0.0014 33.1 7.1 46 107-167 117-162 (428)
128 TIGR01372 soxA sarcosine oxida 44.0 60 0.0013 37.4 7.2 60 108-178 361-420 (985)
129 PF13807 GNVR: G-rich domain o 43.9 27 0.00058 26.7 3.1 33 412-444 37-69 (82)
130 PRK07364 2-octaprenyl-6-methox 43.6 58 0.0013 33.0 6.4 49 109-169 133-181 (415)
131 PRK12843 putative FAD-binding 43.3 46 0.001 35.7 5.8 50 402-451 513-572 (578)
132 PRK12839 hypothetical protein; 43.0 41 0.00089 36.1 5.4 48 403-450 510-567 (572)
133 KOG2311 NAD/FAD-utilizing prot 43.0 22 0.00049 36.7 3.1 56 109-174 136-191 (679)
134 PRK07233 hypothetical protein; 42.6 38 0.00082 34.4 4.9 52 108-174 208-259 (434)
135 PRK12810 gltD glutamate syntha 41.5 46 0.001 34.7 5.4 60 109-178 340-410 (471)
136 PRK12831 putative oxidoreducta 41.5 70 0.0015 33.3 6.7 57 109-174 329-401 (464)
137 PRK12844 3-ketosteroid-delta-1 39.3 49 0.0011 35.4 5.3 51 400-450 488-549 (557)
138 PRK06183 mhpA 3-(3-hydroxyphen 38.9 85 0.0019 33.3 7.0 55 109-174 125-179 (538)
139 TIGR01316 gltA glutamate synth 38.5 74 0.0016 32.9 6.3 59 108-175 319-393 (449)
140 COG1252 Ndh NADH dehydrogenase 38.4 39 0.00086 34.4 4.1 41 402-445 280-321 (405)
141 PRK08274 tricarballylate dehyd 37.5 58 0.0013 33.8 5.4 54 397-450 396-460 (466)
142 TIGR02032 GG-red-SF geranylger 36.9 91 0.002 29.4 6.4 49 106-168 99-147 (295)
143 PRK07057 sdhA succinate dehydr 36.7 57 0.0012 35.2 5.3 51 399-449 360-424 (591)
144 TIGR01318 gltD_gamma_fam gluta 36.3 70 0.0015 33.3 5.8 60 110-178 332-408 (467)
145 COG4895 Uncharacterized conser 36.2 24 0.00053 24.6 1.5 24 171-194 34-59 (63)
146 PRK12845 3-ketosteroid-delta-1 35.8 58 0.0013 34.9 5.1 46 403-448 507-562 (564)
147 PLN00128 Succinate dehydrogena 35.6 69 0.0015 34.9 5.7 50 400-449 400-464 (635)
148 PRK10015 oxidoreductase; Provi 35.5 83 0.0018 32.3 6.1 46 107-167 117-162 (429)
149 PRK06327 dihydrolipoamide dehy 35.4 73 0.0016 33.2 5.8 57 107-174 233-289 (475)
150 PRK07818 dihydrolipoamide dehy 35.1 82 0.0018 32.7 6.1 61 107-178 222-284 (466)
151 PRK01747 mnmC bifunctional tRN 34.9 1E+02 0.0022 33.7 7.0 52 106-174 416-467 (662)
152 TIGR02733 desat_CrtD C-3',4' d 34.8 69 0.0015 33.4 5.5 35 411-449 456-490 (492)
153 TIGR01350 lipoamide_DH dihydro 34.6 81 0.0018 32.5 6.0 58 108-178 221-280 (461)
154 PRK11445 putative oxidoreducta 34.6 1.2E+02 0.0027 29.9 7.1 50 110-171 110-159 (351)
155 COG3486 IucD Lysine/ornithine 34.6 94 0.002 31.6 5.9 56 110-175 290-347 (436)
156 PRK12842 putative succinate de 34.0 82 0.0018 33.8 6.0 51 403-453 509-569 (574)
157 PRK06134 putative FAD-binding 34.0 65 0.0014 34.6 5.2 47 403-449 513-569 (581)
158 PRK04965 NADH:flavorubredoxin 33.4 1.4E+02 0.0029 30.0 7.2 57 107-178 192-248 (377)
159 COG3380 Predicted NAD/FAD-depe 33.0 52 0.0011 31.6 3.7 52 111-176 116-167 (331)
160 PF01593 Amino_oxidase: Flavin 32.6 1E+02 0.0023 30.6 6.3 33 414-448 418-450 (450)
161 COG2509 Uncharacterized FAD-de 32.5 1.3E+02 0.0027 31.2 6.5 72 110-198 185-265 (486)
162 PRK08275 putative oxidoreducta 32.2 62 0.0014 34.5 4.7 54 391-448 347-401 (554)
163 PRK05675 sdhA succinate dehydr 32.2 77 0.0017 34.0 5.4 50 400-449 339-403 (570)
164 PRK12835 3-ketosteroid-delta-1 31.9 97 0.0021 33.4 6.1 53 399-451 507-570 (584)
165 PRK08205 sdhA succinate dehydr 31.8 78 0.0017 34.1 5.3 51 399-449 355-416 (583)
166 TIGR00275 flavoprotein, HI0933 31.5 1E+02 0.0022 31.4 5.9 50 107-172 114-163 (400)
167 PTZ00363 rab-GDP dissociation 30.4 1.2E+02 0.0027 31.3 6.3 47 109-168 243-289 (443)
168 PRK08958 sdhA succinate dehydr 30.4 74 0.0016 34.3 4.9 51 399-449 356-421 (588)
169 TIGR01984 UbiH 2-polyprenyl-6- 30.3 1.2E+02 0.0026 30.2 6.2 42 111-167 119-160 (382)
170 COG0644 FixC Dehydrogenases (f 29.8 1.1E+02 0.0023 31.1 5.7 50 104-167 100-150 (396)
171 PRK08773 2-octaprenyl-3-methyl 29.6 1.3E+02 0.0029 30.1 6.4 46 108-168 123-168 (392)
172 PF01494 FAD_binding_3: FAD bi 29.4 1.6E+02 0.0035 28.4 6.9 49 109-167 122-170 (356)
173 PRK11749 dihydropyrimidine deh 29.4 99 0.0022 32.0 5.5 56 109-174 322-392 (457)
174 PRK08244 hypothetical protein; 29.2 1.4E+02 0.003 31.2 6.7 50 108-169 110-159 (493)
175 PRK13512 coenzyme A disulfide 29.1 99 0.0021 31.8 5.4 47 109-168 69-116 (438)
176 PRK06847 hypothetical protein; 29.0 1.5E+02 0.0033 29.3 6.7 52 108-174 117-168 (375)
177 PF13454 NAD_binding_9: FAD-NA 29.0 1.8E+02 0.0038 25.0 6.2 43 110-167 112-155 (156)
178 TIGR03329 Phn_aa_oxid putative 29.0 1.1E+02 0.0023 31.8 5.7 59 94-169 175-237 (460)
179 PRK08243 4-hydroxybenzoate 3-m 28.4 1.3E+02 0.0029 30.2 6.2 51 109-170 114-164 (392)
180 TIGR01816 sdhA_forward succina 28.0 77 0.0017 33.9 4.5 50 400-449 331-394 (565)
181 PF13434 K_oxygenase: L-lysine 27.5 1.4E+02 0.0031 29.6 6.1 48 109-166 290-338 (341)
182 PRK12769 putative oxidoreducta 27.3 1.2E+02 0.0025 33.2 5.8 52 109-169 517-584 (654)
183 PRK08163 salicylate hydroxylas 26.9 1.5E+02 0.0033 29.6 6.3 48 109-171 121-168 (396)
184 PTZ00139 Succinate dehydrogena 26.5 1.1E+02 0.0023 33.3 5.3 52 399-450 378-444 (617)
185 COG3573 Predicted oxidoreducta 26.3 1.6E+02 0.0035 29.2 5.8 62 107-178 162-237 (552)
186 PRK12809 putative oxidoreducta 26.2 1.3E+02 0.0028 32.8 5.9 51 110-169 501-567 (639)
187 PRK07045 putative monooxygenas 25.4 2.2E+02 0.0047 28.5 7.1 51 109-172 118-168 (388)
188 PLN02676 polyamine oxidase 25.3 1.2E+02 0.0026 31.8 5.3 39 113-166 245-283 (487)
189 TIGR02053 MerA mercuric reduct 25.2 1.3E+02 0.0028 31.2 5.5 54 107-172 216-269 (463)
190 COG0654 UbiH 2-polyprenyl-6-me 25.2 1.6E+02 0.0035 29.6 6.1 46 108-167 115-160 (387)
191 TIGR01988 Ubi-OHases Ubiquinon 25.1 2E+02 0.0044 28.4 6.8 46 108-168 117-162 (385)
192 PRK12775 putative trifunctiona 24.8 1.9E+02 0.0041 33.5 7.1 59 108-175 619-692 (1006)
193 TIGR03385 CoA_CoA_reduc CoA-di 24.5 95 0.0021 31.7 4.3 52 109-175 55-107 (427)
194 KOG2495 NADH-dehydrogenase (ub 24.4 85 0.0019 32.1 3.7 45 399-449 345-390 (491)
195 PRK05714 2-octaprenyl-3-methyl 24.4 2E+02 0.0043 29.0 6.6 45 108-167 122-166 (405)
196 PRK06834 hypothetical protein; 24.4 1.9E+02 0.004 30.4 6.5 47 108-169 110-156 (488)
197 PRK05732 2-octaprenyl-6-methox 24.2 1.9E+02 0.0042 28.8 6.5 45 109-168 124-168 (395)
198 PRK07843 3-ketosteroid-delta-1 24.1 1.1E+02 0.0025 32.6 4.9 52 399-450 494-556 (557)
199 TIGR03833 conserved hypothetic 24.0 40 0.00087 24.2 1.0 22 172-193 34-57 (62)
200 COG3075 GlpB Anaerobic glycero 23.8 1E+02 0.0022 30.6 3.9 50 110-171 270-319 (421)
201 PF13670 PepSY_2: Peptidase pr 23.8 3E+02 0.0065 20.8 6.0 30 119-153 43-72 (83)
202 PRK14989 nitrite reductase sub 23.7 1.8E+02 0.0039 32.9 6.5 59 107-178 196-254 (847)
203 PF00070 Pyr_redox: Pyridine n 23.6 1.2E+02 0.0026 22.5 3.7 30 107-142 49-78 (80)
204 PF10555 MraY_sig1: Phospho-N- 23.3 34 0.00074 16.6 0.3 9 396-404 3-11 (13)
205 TIGR03467 HpnE squalene-associ 23.2 1E+02 0.0022 30.9 4.3 44 110-167 209-252 (419)
206 COG0029 NadB Aspartate oxidase 23.0 1.1E+02 0.0023 32.0 4.1 51 400-451 341-397 (518)
207 PRK06370 mercuric reductase; V 22.6 2E+02 0.0044 29.7 6.4 54 107-172 221-274 (463)
208 PRK06481 fumarate reductase fl 22.5 1.5E+02 0.0033 31.2 5.4 54 397-450 439-502 (506)
209 PRK09564 coenzyme A disulfide 22.5 2.3E+02 0.005 29.0 6.7 56 107-178 200-255 (444)
210 PRK12771 putative glutamate sy 22.2 1.9E+02 0.0041 30.9 6.2 56 110-175 317-386 (564)
211 PRK08020 ubiF 2-octaprenyl-3-m 22.1 2.1E+02 0.0045 28.6 6.2 47 109-171 124-170 (391)
212 TIGR02485 CobZ_N-term precorri 22.1 1.5E+02 0.0033 30.3 5.3 51 400-450 368-429 (432)
213 COG2072 TrkA Predicted flavopr 21.9 1.7E+02 0.0036 30.3 5.5 57 111-178 97-153 (443)
214 PRK06416 dihydrolipoamide dehy 21.9 1.6E+02 0.0035 30.3 5.5 55 108-174 223-277 (462)
215 PRK07333 2-octaprenyl-6-methox 21.3 2.3E+02 0.005 28.3 6.4 47 106-167 119-165 (403)
216 PRK07190 hypothetical protein; 21.2 2.2E+02 0.0047 29.9 6.2 45 109-168 120-164 (487)
217 PRK08626 fumarate reductase fl 21.2 1.5E+02 0.0033 32.4 5.3 51 399-449 371-427 (657)
218 PRK09754 phenylpropionate diox 20.6 2.6E+02 0.0057 28.1 6.6 56 107-178 195-250 (396)
219 TIGR02028 ChlP geranylgeranyl 20.4 2.5E+02 0.0055 28.3 6.4 52 107-167 102-158 (398)
220 TIGR00562 proto_IX_ox protopor 20.4 1.7E+02 0.0037 30.1 5.2 47 113-174 238-284 (462)
221 KOG2820 FAD-dependent oxidored 20.3 1.8E+02 0.0039 29.0 4.8 58 107-177 162-219 (399)
222 PLN02268 probable polyamine ox 20.3 1.8E+02 0.0038 29.7 5.3 39 112-165 210-248 (435)
No 1
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=3.6e-76 Score=597.32 Aligned_cols=413 Identities=36% Similarity=0.515 Sum_probs=314.1
Q ss_pred HHhcc-cCCCCcccccC-----CCCCChhhhhhHHHhhhccccCCC------------------CcchhHHHHHHHHHHc
Q 012707 14 AVASM-PASTHALLLIM-----SVGWDERLVNESYQWVEKVVAFEP------------------PMRQWQSAVRDGLVEV 69 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~-----~~gWs~~~l~py~~~~E~~~~~~~------------------~~~~~~~~~~~~~~~~ 69 (458)
.+|+| |.|++.+|||. ++||+|++++|||+|+|+.....+ ...+....|.++.+++
T Consensus 145 ~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~~~~~~~ag~e~ 224 (623)
T KOG1238|consen 145 VLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNLFTAFHRAGTEI 224 (623)
T ss_pred cccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCchhhHhHHhHHhc
Confidence 67888 99999999997 789999999999999999854322 2345678899999999
Q ss_pred CCCCCCCCcccCCCceeeeeeEE---CCCCeeecHHH-hHh-hc-CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe
Q 012707 70 GVLPYNGFTYDHMYGTKIGGTIF---DQNGQRHTAAD-LLE-YA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD 143 (458)
Q Consensus 70 G~~~~n~~~~d~~~g~~~g~~~~---~~~g~R~s~~~-~l~-~~-~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~ 143 (458)
|.. . .|.++....|.... .++|.|+|++. |+. .. .|+||++..++.|+||++|..+ ++|.||++..
T Consensus 225 G~~-~----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~---~~a~gv~~~~ 296 (623)
T KOG1238|consen 225 GGS-I----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAG---KRAKGVEFVR 296 (623)
T ss_pred CCC-c----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCC---ceEEEEEEEe
Confidence 953 2 34444444443221 27999999876 875 44 4899999999999999999765 4899999987
Q ss_pred CCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccH
Q 012707 144 ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL 215 (458)
Q Consensus 144 ~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~ 215 (458)
..|+.++++ +.||||||||||+||||||+|| ++||+++.|||+||+|||||+..+++.....+.....
T Consensus 297 ~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~~~~~~~~~~~~~~ 372 (623)
T KOG1238|consen 297 DGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNPGFVFSTNPVELSL 372 (623)
T ss_pred cCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccceeeecCCCccccc
Confidence 337888886 7999999999999999999999 9999999999999999999999987765555543333
Q ss_pred HHHhccchhhhHHhhccCCcccCCCCCCCccCccCccccc----cc---------cCCCCC------CCHHHHHHHHHhh
Q 012707 216 IQVVGITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQ----LS---------KVPPKQ------RTPEAIAEAIENM 276 (458)
Q Consensus 216 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~------~~~~~~~~~~~~~ 276 (458)
.+..+......|+...+|+ +.... ...++++...... +. .+.... ...++.+.++...
T Consensus 373 ~~~~~~~~~~~yl~~~~G~-~~~~~--~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 449 (623)
T KOG1238|consen 373 IRLVGITTVGQYLEGGSGP-LASPG--VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIYQALFGEL 449 (623)
T ss_pred cccccchHHHHHHHcCCCC-cccCc--ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHHHHhhhhh
Confidence 3334444556677766666 22211 0112222211110 00 000000 0001222121111
Q ss_pred hcCCCCCCCceeEEeeecccccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccC--c
Q 012707 277 KALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESM--S 354 (458)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~p~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~ 354 (458)
. . ...+.+++.+++|.|||+|.|.|+||.+.|.|++||+++|.|++.++++++.+.++.++.+|+++..+.. +
T Consensus 450 ~---~--~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~ 524 (623)
T KOG1238|consen 450 T---N--SDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKP 524 (623)
T ss_pred h---c--CceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhcccc
Confidence 1 0 1124567788999999999999999999999999999999999999999999999999999999886431 2
Q ss_pred hhhhhhcccCCCCcCCCCCCCCHHHHHHHHHhcccccccccccccCC------cccCCCCeeeccCCceEeecccCCCCC
Q 012707 355 VPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSP 428 (458)
Q Consensus 355 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL~V~DaSv~P~~~ 428 (458)
.++|... ...+|++|+||+|....|.||++|||+|| +|||+++|||||+|||||||||||.+|
T Consensus 525 ~~~c~~~-----------~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~p 593 (623)
T KOG1238|consen 525 VPGCDLL-----------AFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESP 593 (623)
T ss_pred CCCcccc-----------cCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCceEeeccccCCCC
Confidence 2333211 24689999999999999999999999999 899999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012707 429 GTNPQATVMMLGRYMGVRILSERLASNDS 457 (458)
Q Consensus 429 ~~np~~ti~alA~r~A~~i~~~~~~~~~~ 457 (458)
++||++|+||||||+|++|++++.+....
T Consensus 594 sgN~nA~v~MIgek~ad~Ik~~~~~~~~~ 622 (623)
T KOG1238|consen 594 SGNPNAPVMMIGEKAADMIKEEWLANKDG 622 (623)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999999999888887665544
No 2
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=3.1e-74 Score=604.44 Aligned_cols=439 Identities=59% Similarity=1.002 Sum_probs=319.2
Q ss_pred HHhcc-cCCCCcccccCCCCCChhhhhhHHHhhhccccCCCCcchhHHHHHHHHHHcCCCCCCCCcccCCCceeeeeeEE
Q 012707 14 AVASM-PASTHALLLIMSVGWDERLVNESYQWVEKVVAFEPPMRQWQSAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIF 92 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~~~gWs~~~l~py~~~~E~~~~~~~~~~~~~~~~~~~~~~~G~~~~n~~~~d~~~g~~~g~~~~ 92 (458)
.+|.| +.|+++.||+. .||+|++++|||+++|+.+...|...++...|.+++.++|++++|+...++..|...|.+++
T Consensus 136 ~iN~~~y~Rg~~~d~~~-~GW~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~ 214 (587)
T PLN02785 136 CINAGFYSRASTRFIQK-AGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIF 214 (587)
T ss_pred hhcCeEEEeCCHHHhcc-CCCCcccccchHHHHhcccccCCCcChHHHHHHHHHHHcCCCccCCCCCCCccceeeeEEEe
Confidence 68888 88999999976 79999999999999998765556667889999999999999888876677777777777777
Q ss_pred CCCCeeecHHHhHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 93 DQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 93 ~~~g~R~s~~~~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
++.|.|++++.+++.+.++||+|+++++|+||++++++ ...+|+||+|.+.+|+++++.+..+++||||||||+|+||+
T Consensus 215 ~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~ 293 (587)
T PLN02785 215 DEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQ 293 (587)
T ss_pred CCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHH
Confidence 77899999988777778899999999999999998642 22389999998766766554322225799999999999999
Q ss_pred HHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccHHHHhccchhhhHHhhccCCcccCCC-CCC
Q 012707 173 LLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEAASGENFAGGS-PSP 243 (458)
Q Consensus 173 LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ 243 (458)
|||+|| ++||++++|+|+||+|||||+...+.+..+.+......+.++....+.|.....+. .... .+.
T Consensus 294 lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~ 371 (587)
T PLN02785 294 MLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGVYIEASSGF--GQSPDSIH 371 (587)
T ss_pred HHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCchhhhHhhhhhhccccceeccccc--ccCchhhh
Confidence 999999 89999999999999999999999888876654321111211111111221111111 0000 000
Q ss_pred CccCccCccccccccCCCCCCCHHHHHHHHHhhhcCCCCCCCceeEEeeecccccceEEEecCCCCCCCCeeeCCCCCCh
Q 012707 244 RDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEP 323 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srG~V~l~s~dp~~~P~I~~~y~~~~ 323 (458)
...+.+....+.+..+++....++....++.....+....+...++...+++|.|||+|+|+|+||.+.|.|++||+++|
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p 451 (587)
T PLN02785 372 CHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHP 451 (587)
T ss_pred hhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEEecCCCcceEEEecCCCCCcCCccccccCCCH
Confidence 00111111111111122222222222222111001111112223455678899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHccccccccccccC-chhhhhhcccCCCCcCCCCCCCCHHHHHHHHHhcccccccccccccCCc
Q 012707 324 EDLQRCVQGISTIEKIIESKSFSKFKYESM-SVPILVNMTASAPVNLLPRHSNASTSLEQFCRDTVMTIWHYHGGCQVGK 402 (458)
Q Consensus 324 ~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~H~~GTcrMG~ 402 (458)
.|++.++++++.+++++++.+++.+...+. +..++.......+.+..|....+|++|++|+|++..+.||++|||+||+
T Consensus 452 ~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~ 531 (587)
T PLN02785 452 QDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGK 531 (587)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCCCCCCCHHHHHHHHHHhcccccCCcccccCCC
Confidence 999999999999999999988877652210 0001110000011112343345788999999999999999999999999
Q ss_pred ccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcC
Q 012707 403 VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASND 456 (458)
Q Consensus 403 VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~~~~ 456 (458)
|||++||||||+|||||||||||.+|++|||+|+||||||+|++|+++++++..
T Consensus 532 VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~~~~~~ 585 (587)
T PLN02785 532 VVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRERLGRAA 585 (587)
T ss_pred eECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999999999999999999999887653
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=4.8e-66 Score=545.99 Aligned_cols=403 Identities=24% Similarity=0.295 Sum_probs=283.4
Q ss_pred HHhcc-cCCCCcccccC------CCCCChhhhhhHHHhhhccccCC----------------CCcchhHHHHHHHHHHcC
Q 012707 14 AVASM-PASTHALLLIM------SVGWDERLVNESYQWVEKVVAFE----------------PPMRQWQSAVRDGLVEVG 70 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~------~~gWs~~~l~py~~~~E~~~~~~----------------~~~~~~~~~~~~~~~~~G 70 (458)
.+|.| +.|+++.||+. +++|+|+||+|||+++|+.+... ....+..+.|.++++++|
T Consensus 93 ~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~~~~~~a~~~lG 172 (560)
T PRK02106 93 SINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAG 172 (560)
T ss_pred CccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHHHHHHHHHHHcC
Confidence 55666 88999999874 46999999999999999876310 123566788999999999
Q ss_pred CCCCCCCcccCCCceeeeeeEECCCCeeecHHH-hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCce
Q 012707 71 VLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAK 148 (458)
Q Consensus 71 ~~~~n~~~~d~~~g~~~g~~~~~~~g~R~s~~~-~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~ 148 (458)
++.....+.....|...+... +.+|.|+++.. ||+ +..++||+|++++.|+||+++++ +|+||+|.+.+ ..
T Consensus 173 ~~~~~~~~~~~~~g~~~~~~~-~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~GV~~~~~~-~~ 245 (560)
T PRK02106 173 YPRTDDLNGYQQEGFGPMDRT-VTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAVGVEYERGG-GR 245 (560)
T ss_pred CCcCCCCCCCCCceeEEEeee-cCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEEEEEEEeCC-cE
Confidence 863211111111222211111 26899999876 887 56689999999999999999853 89999998743 33
Q ss_pred eEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccH-HHHh
Q 012707 149 HRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL-IQVV 219 (458)
Q Consensus 149 ~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~-~~~~ 219 (458)
.++. ++|+||||||+|+||+|||+|| ++||++++|||+||+|||||+...+.+.++.+..... ....
T Consensus 246 ~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~~~~~~~~~~~~ 321 (560)
T PRK02106 246 ETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQPVSLYPALKWW 321 (560)
T ss_pred EEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCCCcccccccchh
Confidence 4443 6899999999999999999999 8899999999999999999999888877665432100 0000
Q ss_pred -ccchhhhHHhhccCCcccCCCCCCCccCccCccccccccCCCCCCCHHHHHHHHHhhhcCCCCCCCceeEEeeeccccc
Q 012707 220 -GITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALDDPAFRGGFILEKVMGPVS 298 (458)
Q Consensus 220 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~s 298 (458)
.......|.....|+ +.... ....++.... ... ..+. ... .+....+... ...........+...+++|.|
T Consensus 322 ~~~~~~~~~~~~~~g~-~~~~~--~~~~~~~~~~-~~~-~~p~-~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~P~s 393 (560)
T PRK02106 322 NKPKIGAEWLFTGTGL-GASNH--FEAGGFIRSR-AGV-DWPN-IQY-HFLPVAIRYD-GSNAVKGHGFQAHVGPMRSPS 393 (560)
T ss_pred hhhHHHHHHHhcCCCC-ccccc--cceeeEEecC-CCC-CCCC-eEE-EEeecccccc-CCCCCCCCeEEEEEEecCCcc
Confidence 000011232222332 11100 0000111000 000 0000 000 0000000000 000000112234456789999
Q ss_pred ceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccCchhhhhhcccCCCCcCCCC-CCCCH
Q 012707 299 TGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPR-HSNAS 377 (458)
Q Consensus 299 rG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 377 (458)
||+|+|+++||++.|.|+++|+.++.|++.+.++++++++++++++++.+...+ ..|. ...++
T Consensus 394 rG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~~~~~~ 457 (560)
T PRK02106 394 RGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGRE----------------ISPGADVQTD 457 (560)
T ss_pred eEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc----------------cCCCcccCCH
Confidence 999999999999999999999999999999999999999999998877654221 1232 24678
Q ss_pred HHHHHHHHhcccccccccccccCC----cccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 012707 378 TSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 378 ~~~~~~~~~~~~~~~H~~GTcrMG----~VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
+++++|+++...+.+|++|||||| ||||++|||||++||||||+||||+++++||++|+||||||+|++|+++.
T Consensus 458 ~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 458 EEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred HHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999999999 79999999999999999999999999999999999999999999988754
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=8.5e-66 Score=541.26 Aligned_cols=399 Identities=24% Similarity=0.309 Sum_probs=281.9
Q ss_pred HHhcc-cCCCCcccccC------CCCCChhhhhhHHHhhhccccC---------------CCCcchhHHHHHHHHHHcCC
Q 012707 14 AVASM-PASTHALLLIM------SVGWDERLVNESYQWVEKVVAF---------------EPPMRQWQSAVRDGLVEVGV 71 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~------~~gWs~~~l~py~~~~E~~~~~---------------~~~~~~~~~~~~~~~~~~G~ 71 (458)
.+|.| +.|+++.||+. .++|+|++|+|||+++|+.+.. .+...+..+.|.++++++|+
T Consensus 87 ~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a~~~~G~ 166 (532)
T TIGR01810 87 SINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGY 166 (532)
T ss_pred CEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 45677 88999999764 4689999999999999987642 11234567889999999998
Q ss_pred CCCCCCcccCCCceeeeeeEECCCCeeecHHH-hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCcee
Q 012707 72 LPYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKH 149 (458)
Q Consensus 72 ~~~n~~~~d~~~g~~~g~~~~~~~g~R~s~~~-~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~ 149 (458)
+.....+.....|+..+...| .+|.|+++.. ||+ +..|+|++|+++++|+||+++++ +|+||++.+ .++..
T Consensus 167 ~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~-~~~~~ 239 (532)
T TIGR01810 167 NKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK-GGRKE 239 (532)
T ss_pred CccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe-CCcEE
Confidence 532111000111222111122 6899999876 887 55689999999999999999854 899999986 34444
Q ss_pred EEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccH-HHHh-
Q 012707 150 RAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSL-IQVV- 219 (458)
Q Consensus 150 ~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~-~~~~- 219 (458)
++. ++|+||||||||+||+|||+|| ++||++++|+|+||+|||||+...+.+.++.+..... ....
T Consensus 240 ~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~~~~~~~ 315 (532)
T TIGR01810 240 HTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYPSLNWLK 315 (532)
T ss_pred EEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCcccccccchhh
Confidence 443 6899999999999999999999 8899999999999999999999888887765432100 0000
Q ss_pred ccchhhhHHhhccCCcccCCCCCCCccCccCccccccccCCCCCCCHHHHHHHHH-h--hhcCCCCCCCceeEEeeeccc
Q 012707 220 GITQFGSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIE-N--MKALDDPAFRGGFILEKVMGP 296 (458)
Q Consensus 220 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~p 296 (458)
.......|.....|. +.... ....+++.... .. ..+++...+.. . .............+...+++|
T Consensus 316 ~~~~~~~~~~~~~g~-~~~~~--~~~~~~~~~~~----~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 384 (532)
T TIGR01810 316 QPFIGAQWLFGRKGA-GASNH--FEGGGFVRSND----DV----DYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYS 384 (532)
T ss_pred hhHHHHHHHhcCCCC-ccccc--cceeEEEecCC----CC----CCCCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCC
Confidence 000001222222222 11000 00001110000 00 00000000000 0 000000001112344567899
Q ss_pred ccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccCchhhhhhcccCCCCcCCCC-CCC
Q 012707 297 VSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPR-HSN 375 (458)
Q Consensus 297 ~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 375 (458)
.|||+|+|+++||.+.|.|+++|+.+|.|++.++++++.+++++++.+++.+...+ ..|. ...
T Consensus 385 ~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~----------------~~p~~~~~ 448 (532)
T TIGR01810 385 NSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGE----------------ISPGPEVQ 448 (532)
T ss_pred CCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccc----------------cCCCCCCC
Confidence 99999999999999999999999999999999999999999999988777654221 1222 346
Q ss_pred CHHHHHHHHHhcccccccccccccCC------cccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 012707 376 ASTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~~H~~GTcrMG------~VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
+|++|++|+|+...+.+|++|||||| ||||++||||||+|||||||||||+++++||++|+||||||+||+|++
T Consensus 449 ~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~ 528 (532)
T TIGR01810 449 TDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRG 528 (532)
T ss_pred CHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998 599999999999999999999999999999999999999999999986
Q ss_pred H
Q 012707 450 E 450 (458)
Q Consensus 450 ~ 450 (458)
+
T Consensus 529 ~ 529 (532)
T TIGR01810 529 K 529 (532)
T ss_pred c
Confidence 4
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=491.74 Aligned_cols=395 Identities=25% Similarity=0.340 Sum_probs=285.2
Q ss_pred HHhcc-cCCCCcccccC------CCCCChhhhhhHHHhhhccccC---C---------C-------CcchhHHHHHHHHH
Q 012707 14 AVASM-PASTHALLLIM------SVGWDERLVNESYQWVEKVVAF---E---------P-------PMRQWQSAVRDGLV 67 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~------~~gWs~~~l~py~~~~E~~~~~---~---------~-------~~~~~~~~~~~~~~ 67 (458)
.++.| +.|+++.||+. +++|+|+||+|||+++|+..+. . | ...+....|.+++.
T Consensus 92 ~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~~~a~~~a~~ 171 (542)
T COG2303 92 SINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGE 171 (542)
T ss_pred hhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHHHHHHHHHHH
Confidence 56788 88999999976 4779999999999999985442 0 1 12457888999999
Q ss_pred HcCCCCC---CCCcccCCCceeeeeeEECCCCeeecHHH-hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEE
Q 012707 68 EVGVLPY---NGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR 142 (458)
Q Consensus 68 ~~G~~~~---n~~~~d~~~g~~~g~~~~~~~g~R~s~~~-~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~ 142 (458)
++|++.. |+..++ |.+..+..+ .+|.|+++.. ||+ +.+++|++|+|++.|+||+++++ +++||++.
T Consensus 172 ~~G~~~~~~~~~~~~~---g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~~gv~~~ 242 (542)
T COG2303 172 QLGFPTTPDPNGADQE---GFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RAVGVEVE 242 (542)
T ss_pred HcCCCcCcccccCCCC---Ccccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----eeEEEEEE
Confidence 9998642 322222 222111122 4899999987 886 68899999999999999999987 79999998
Q ss_pred eCCCc-eeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCCCceEeecCCCCccc
Q 012707 143 DATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEV 213 (458)
Q Consensus 143 ~~~g~-~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~ 213 (458)
..++. ...+. ++++||||||+|+||+|||+|| .+||+++.++|+||+|||||....+.+..+.....
T Consensus 243 ~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~~~~~~~ 318 (542)
T COG2303 243 IGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEATEPTND 318 (542)
T ss_pred eCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheeccCcccc
Confidence 64432 23332 7899999999999999999999 78999999999999999999998887776654411
Q ss_pred cHHHHhccchh--hhHHhhccCCcccCCCCCCCccCccCccccccccCCCCCCCHHHHHHHHHhhhcCC--CCCCCceeE
Q 012707 214 SLIQVVGITQF--GSYIEAASGENFAGGSPSPRDYGMFSPKIGQLSKVPPKQRTPEAIAEAIENMKALD--DPAFRGGFI 289 (458)
Q Consensus 214 ~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 289 (458)
........... ..|.....|. .... ....++ ....+....++. +..++...... ........+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~G~-~~~~---~~~~gf--------~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~ 385 (542)
T COG2303 319 SVLSLFSKLGIGADRYLLTRDGP-GATN---HFEGGF--------VRSGPAGEYPDG-QYHFAPLPLAIRAAGAEHGFTL 385 (542)
T ss_pred ccccccccccccceeEEeecCCC-cccc---cccccc--------cccCccccCCCc-ccccccccccccccccCCccEE
Confidence 11100111000 1122112222 1100 001111 111111111111 11111100000 111223456
Q ss_pred EeeecccccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccCchhhhhhcccCCCCcC
Q 012707 290 LEKVMGPVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNL 369 (458)
Q Consensus 290 ~~~l~~p~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (458)
.....+|.|||.|++.+.||...|.|+++|++++.|++.+.++++..++++.+..+..+...+ .
T Consensus 386 ~~~~~rp~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e----------------~ 449 (542)
T COG2303 386 HVGPMRPKSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAE----------------L 449 (542)
T ss_pred eeccCCCccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHh----------------h
Confidence 677889999999999999999999999999999999999999999999999977666655322 2
Q ss_pred CCC-CCCCHHHHHHHHHhcccccccccccccCC-----cccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHH
Q 012707 370 LPR-HSNASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 443 (458)
Q Consensus 370 ~p~-~~~~~~~~~~~~~~~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~ 443 (458)
.|. ...+++++.+|++....+.+|++|||||| +|+|++|||||++||||+||||||+++++||++||+|||+|+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~ra 529 (542)
T COG2303 450 APGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERA 529 (542)
T ss_pred cCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHH
Confidence 332 35678899999999999999999999999 455599999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 012707 444 GVRILSE 450 (458)
Q Consensus 444 A~~i~~~ 450 (458)
|++|+++
T Consensus 530 A~~I~~~ 536 (542)
T COG2303 530 ADHILGD 536 (542)
T ss_pred HHHHhhc
Confidence 9999873
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=3e-44 Score=370.67 Aligned_cols=384 Identities=15% Similarity=0.147 Sum_probs=233.4
Q ss_pred hhHHHHHhcccCCCCcccccCCCCC--ChhhhhhHHHhhhccccCCCC-c-ch--hHHHHHHHHHHc-CC-CCCCCCccc
Q 012707 9 AFWEVAVASMPASTHALLLIMSVGW--DERLVNESYQWVEKVVAFEPP-M-RQ--WQSAVRDGLVEV-GV-LPYNGFTYD 80 (458)
Q Consensus 9 ~~w~~~~~~~~~r~~~~d~~~~~gW--s~~~l~py~~~~E~~~~~~~~-~-~~--~~~~~~~~~~~~-G~-~~~n~~~~d 80 (458)
+.|...+..|.. ..++|.. .+| +|+||+|||+++|+.++..+. + .+ ....+....+++ |+ .... .
T Consensus 122 ~hW~g~~~R~~p--~~r~g~~-~dWPI~y~eL~PyY~~Ae~~~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 194 (544)
T TIGR02462 122 THWTCATPRFHR--EERPKLS-DDAAEDDAEWDRLYTKAESLIGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQP----L 194 (544)
T ss_pred hhcCcccCCCCH--HhccCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCcCCCcccchhHHHHHHHHhcccccccc----C
Confidence 467777777743 2346655 689 799999999999999886432 1 11 122223333444 33 1111 0
Q ss_pred CCCceeeeeeEECCCCeeecHH-HhHh-hc----CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEe
Q 012707 81 HMYGTKIGGTIFDQNGQRHTAA-DLLE-YA----NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYL 153 (458)
Q Consensus 81 ~~~g~~~g~~~~~~~g~R~s~~-~~l~-~~----~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~ 153 (458)
.......+ | +.+.|+|+. +.++ +. .++|++|++++.|+||++|+++ +.+|+||+|.+. +|+.++++
T Consensus 195 PlA~~~~~---c-~~~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~- 267 (544)
T TIGR02462 195 PLACHRRT---D-PTYVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK- 267 (544)
T ss_pred chhhhccC---C-CccceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-
Confidence 11111101 1 456777764 4443 22 4789999999999999998642 127999999986 57777774
Q ss_pred ccCCCceEEEcCCCcCchHHHHhhc------CCCcceeecCCccCCCCCCCCCceEeecCCCCccccHHHHhccchhhhH
Q 012707 154 KNGPKNEIIVSAGALGSPQLLMLSG------AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSY 227 (458)
Q Consensus 154 ~~~~~~eVILsAGai~SP~LLl~SG------~~gI~~~~d~p~VG~nl~dH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (458)
||.||||||+|+||||||+|+ +.|+.+...++.||||||||+...+.+.++.+....+ .+......|
T Consensus 268 ----A~~vVLAagaIetpRLLL~S~~~~~~~p~gl~Nss~~g~VGRnlmdh~~~~~~~~~~~~~~~~~---~~~~~~~~~ 340 (544)
T TIGR02462 268 ----ADVYVLACGAVHNPQILVNSGFGQLGRPDPTNPPPLLPSLGRYITEQSMTFCQIVLSTELVDSV---RSDPRGLDW 340 (544)
T ss_pred ----CCEEEEccCchhhHHHHHhCCCCCCcCCCCcCCCCCCCCCCcchhcCCCccEEEEecchhhhhc---cCCcccccc
Confidence 789999999999999999998 2344332224789999999999877766654421100 000000001
Q ss_pred HhhccC-C--cccCCCCCCCccC-ccCccccccc-cCCCCCCCHHHHHHHHH--hh-hcCCCC-CCCceeEEeeeccccc
Q 012707 228 IEAASG-E--NFAGGSPSPRDYG-MFSPKIGQLS-KVPPKQRTPEAIAEAIE--NM-KALDDP-AFRGGFILEKVMGPVS 298 (458)
Q Consensus 228 ~~~~~g-~--~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~~~~l~~p~s 298 (458)
...... . .+... .....+. ........+. ..+. ...+....+. .. ...... ......+.+.++.+++
T Consensus 341 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~w---~~~~~~~~~~~g~~~~~~~~~~~v~l~~~~e~lP~~~N 416 (544)
T TIGR02462 341 WKEKVANHMMKHPED-PLPIPFRDPEPQVTTPFTEEHPW---HTQIHRDAFSYGAVGPSIDSRVIVDLRFFGRTEPKEEN 416 (544)
T ss_pred ccccchhhhccccCC-cccccccccCccccccccccccc---chhhhhhhhhcccccccccccceeeEEEEeccCCCCCC
Confidence 000000 0 00000 0000000 0000000000 0000 0000010000 00 000001 1111224455555555
Q ss_pred ceEEEecC--CCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccCchhhhhhcccCCCCcCCCCCCCC
Q 012707 299 TGHLELRT--RNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSNA 376 (458)
Q Consensus 299 rG~V~l~s--~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 376 (458)
+|+|++ +|.++.|++.++|..++.|++.+.++++.+.++++..+...... .+
T Consensus 417 --rV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~~~~~-------------------~~----- 470 (544)
T TIGR02462 417 --KLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGYLPGS-------------------LP----- 470 (544)
T ss_pred --eEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCcccc-------------------cc-----
Confidence 599975 69999999999999999999999999999999987644221110 00
Q ss_pred HHHHHHHHHhcccccccccccccCC-----cccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 012707 377 STSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 377 ~~~~~~~~~~~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
.+. .....+|++|||||| ||||++|||||++||||+|+|+||+.+++||++|+||+|+|+|++|+++
T Consensus 471 -----~~~--~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 471 -----QFM--EPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred -----ccc--CCCccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 000 112578999999999 8999999999999999999999999999999999999999999999865
No 7
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=1.5e-35 Score=258.44 Aligned_cols=139 Identities=34% Similarity=0.563 Sum_probs=110.1
Q ss_pred cccceEEEecCCCCCCCCeeeCCCCCChhHHHHHHHHHHHHHHHHccccccccccccCchhhhhhcccCCCCcCCCCCCC
Q 012707 296 PVSTGHLELRTRNPNDNPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYESMSVPILVNMTASAPVNLLPRHSN 375 (458)
Q Consensus 296 p~srG~V~l~s~dp~~~P~I~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 375 (458)
|+|||+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++++. ++++...+.. +.. ..........
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~-------~~~~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELL-PGP-------SPFCPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEE-SCG-------CSCCGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hccccccccc-ccc-------cccccccccc
Confidence 789999999999999999999999999999999999999999999997 6555321100 000 0000011345
Q ss_pred CHHHHHHHHHhcccccccccccccCC-----cccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHH
Q 012707 376 ASTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYM 443 (458)
Q Consensus 376 ~~~~~~~~~~~~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~ 443 (458)
++++|++|+++...+.+|++|||||| +|||++|||||++||||+||||||+++++||++|+||||+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 78899999999999999999999999 999999999999999999999999999999999999999995
No 8
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.97 E-value=5.9e-31 Score=257.24 Aligned_cols=176 Identities=31% Similarity=0.418 Sum_probs=127.4
Q ss_pred HHhcc-cCCCCcccccC------CCCCChhhhhhHHHhhhccccC----------------CCCcchhHHHHHHHHHHcC
Q 012707 14 AVASM-PASTHALLLIM------SVGWDERLVNESYQWVEKVVAF----------------EPPMRQWQSAVRDGLVEVG 70 (458)
Q Consensus 14 ~~~~~-~~r~~~~d~~~------~~gWs~~~l~py~~~~E~~~~~----------------~~~~~~~~~~~~~~~~~~G 70 (458)
.++.| +.|+++.||+. .++|+|++|+|||+++|+.... .+...+....|.++++++|
T Consensus 85 ~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a~~~~G 164 (296)
T PF00732_consen 85 AINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDAAEELG 164 (296)
T ss_dssp GTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHHHHHTT
T ss_pred cccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHHHHHcC
Confidence 45666 77999988775 4579999999999999954321 2234567789999999999
Q ss_pred CC-CCCCCcccCCCceeeeeeEECCCCeeecHHH-hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCc
Q 012707 71 VL-PYNGFTYDHMYGTKIGGTIFDQNGQRHTAAD-LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA 147 (458)
Q Consensus 71 ~~-~~n~~~~d~~~g~~~g~~~~~~~g~R~s~~~-~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~ 147 (458)
++ +.+. .....+|.+.... .+++|.|+++.. ||+ +..++|++|+++++|+||++++++ .+|+||+|.+.++.
T Consensus 165 ~~~~~~~-~~~~~~g~~~~~~-~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~~~~~~ 239 (296)
T PF00732_consen 165 IPVPQDF-NGCDPCGFCMTGF-NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYVDNDGG 239 (296)
T ss_dssp HHBCSCT-TSSTCSEEEECEE-CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEEETTTS
T ss_pred Ccccccc-ccccccccccccc-cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeeeecCCc
Confidence 86 2221 1111222222111 138999999876 886 777889999999999999997443 48999999986666
Q ss_pred -eeEEEeccCCCceEEEcCCCcCchHHHHhhc--------CCCcceeecCCccCCCCCCCC
Q 012707 148 -KHRAYLKNGPKNEIIVSAGALGSPQLLMLSG--------AHNITVVLDQPLVGQGMSDNP 199 (458)
Q Consensus 148 -~~~v~~~~~~~~eVILsAGai~SP~LLl~SG--------~~gI~~~~d~p~VG~nl~dH~ 199 (458)
.+.+. ++|+||||||||+||+|||+|| +.||++++|+| ||||||||+
T Consensus 240 ~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 240 VQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp EEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred ceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 23333 6899999999999999999999 78999999999 999999997
No 9
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.62 E-value=0.0058 Score=65.49 Aligned_cols=60 Identities=17% Similarity=0.298 Sum_probs=47.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc-hHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S-P~LLl 175 (458)
.+...|++|++++.|++|+.|+++ +++||.+.. +|+.++++ +++.||||+|.++. |.+|.
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHH
Confidence 445679999999999999998665 799999965 67766665 55689999999985 55554
No 10
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.33 E-value=0.013 Score=61.96 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=45.2
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc-hHHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 175 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S-P~LLl 175 (458)
..+++++|++++.|++|+.+++ +++||++.. +|+..+++ ++|.||||+|.++. +.++.
T Consensus 184 ~~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 184 ARFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HhCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence 3456999999999999998743 799999865 67666665 56789999999964 44443
No 11
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.18 E-value=0.017 Score=61.66 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=46.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHh
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 176 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~ 176 (458)
...+.+++|++++.|++|+.+++ +++||.+.. +|+..+++ +++.||||+|.+++-+-|+.
T Consensus 217 ~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 217 GLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred HHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHH
Confidence 44567999999999999998753 799999875 56666664 45689999999988554443
No 12
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.94 E-value=0.023 Score=60.56 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=44.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
.+.+.+++|++++.|++|+.+++ +++||++.. +|+.++++ +++.||||+|.+..-
T Consensus 217 ~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N 271 (557)
T PRK12844 217 AALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHN 271 (557)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCC
Confidence 34567999999999999998753 899999975 67666664 557899999998873
No 13
>PRK12839 hypothetical protein; Provisional
Probab=95.81 E-value=0.025 Score=60.40 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=43.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.+.+++|++++.|++|+.++++ +++||.+.+.+|+ .++. ++|.||||+|.+..
T Consensus 223 ~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~ 277 (572)
T PRK12839 223 SADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPN 277 (572)
T ss_pred HHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCccc
Confidence 344568999999999999987554 7999999765554 3443 67999999999987
No 14
>PRK07121 hypothetical protein; Validated
Probab=95.81 E-value=0.029 Score=58.89 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=46.2
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc-hHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS-PQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S-P~LLl 175 (458)
.+.+.+++|++++.|++|+.++++ +++||++.. +++.+.++ ++|.||||+|.+.. |.++.
T Consensus 186 ~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 186 RAAALGVQIRYDTRATRLIVDDDG----RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred HHHhCCCEEEeCCEEEEEEECCCC----CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHH
Confidence 445678999999999999987654 799999965 56655664 44999999998875 44444
No 15
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.63 E-value=0.036 Score=57.72 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=48.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhh
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 177 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~S 177 (458)
.+.+.+++|++++.|++|+.+++ +++||.+...+|+...++ +|.||||+|.+.+.+.|+.+
T Consensus 140 ~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 140 SAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred HHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEEECCCCCCCCHHHHHh
Confidence 34556899999999999998653 799999864456555553 68999999999988777755
No 16
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.41 E-value=0.045 Score=58.39 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=43.6
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
+.+.+++|++++.|++|+.++ + +++||.+.. +|+...++ ++|-||||+|.++.-.
T Consensus 227 ~~~~Gv~i~~~t~v~~Li~~~-g----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 227 VLRAGIPIWTETSLVRLTDDG-G----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHCCCEEEecCEeeEEEecC-C----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccH
Confidence 445799999999999998753 3 899999875 56655564 6789999999998643
No 17
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.18 E-value=0.055 Score=55.37 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=42.6
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCchHHHHh
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 176 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~ 176 (458)
.+..+.+|+.++.|++|+.+++ +++||++.+ .+|+.++++ ++.||||+|.+.. .++..
T Consensus 151 ~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-----A~aVIlAtGG~~~-~~~~~ 209 (417)
T PF00890_consen 151 AEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-----AKAVILATGGFGG-ELLRQ 209 (417)
T ss_dssp HHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-----ESEEEE----BGG-HHHHH
T ss_pred HhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-----eeEEEeccCcccc-ccccc
Confidence 3345699999999999999865 899999984 367777775 5699999999999 55543
No 18
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=94.94 E-value=0.03 Score=53.85 Aligned_cols=52 Identities=25% Similarity=0.491 Sum_probs=42.7
Q ss_pred CCCC-eEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSG-LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~n-l~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
..|+ ++|+++++|++|+-+. + ++.||+|.|..|++..+ ....||||.|.+.-
T Consensus 155 ~~pe~~ki~~nskvv~il~n~-g----kVsgVeymd~sgek~~~-----~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 155 ENPELVKILLNSKVVDILRNN-G----KVSGVEYMDASGEKSKI-----IGDAVVLATGGFGY 207 (477)
T ss_pred cChHHHhhhhcceeeeeecCC-C----eEEEEEEEcCCCCccce-----ecCceEEecCCcCc
Confidence 3455 7999999999999443 3 79999999988887666 37999999998875
No 19
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.91 E-value=0.066 Score=55.29 Aligned_cols=55 Identities=20% Similarity=0.346 Sum_probs=43.2
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.+.+++|++++.|++|+.++++ +++||++.+.+++.+.+ ++|.||||+|.+..
T Consensus 139 ~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 139 KAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGS 193 (439)
T ss_pred HHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCC
Confidence 445568999999999999997654 79999997644543344 57999999998876
No 20
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.84 E-value=0.089 Score=56.45 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=44.3
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
.+.+.+++|++++.|++|+.+++ +++||.+.. ++...+++ ++|.||||+|++..-.-+
T Consensus 226 ~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~-~~~~~~i~----a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 226 SAEDLGVRIWESAPARELLREDG-----RVAGAVVET-PGGLQEIR----ARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEE-CCcEEEEE----eCCEEEEcCCCcccCHHH
Confidence 34557899999999999998743 799999875 34444554 459999999999764444
No 21
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.67 E-value=0.1 Score=55.81 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=43.9
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
...+.+++|+.++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.+..
T Consensus 135 ~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 190 (570)
T PRK05675 135 GNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYI-----KSKATVLATGGAGR 190 (570)
T ss_pred HHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEE-----ecCeEEECCCCccc
Confidence 344679999999999999987554 899999865 45666666 47999999998774
No 22
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=94.61 E-value=0.099 Score=56.07 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=44.0
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
..+.+.+++|++++.|++|+.+++ +++||.+.. +|+.+++. +++.||||+|.+..-
T Consensus 229 ~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n 284 (578)
T PRK12843 229 YSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccC
Confidence 344557899999999999988643 799999865 56655554 568999999998874
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.61 E-value=0.11 Score=54.73 Aligned_cols=59 Identities=19% Similarity=0.383 Sum_probs=44.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
.+...++++++++.|++|+++.++ +..+|+||++.. +|+..++.+ .+++.|||+.|.+.
T Consensus 235 ~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l--~~~DlVivTnGs~t 293 (576)
T PRK13977 235 YLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDL--TEDDLVFVTNGSIT 293 (576)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEe--cCCCEEEEeCCcCc
Confidence 456679999999999999996221 124899999975 455444433 48999999999754
No 24
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=94.61 E-value=0.094 Score=56.49 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+|++|++++.|++|+.++++ +++||.+.+. +|+...+ .+|.||||+|.+..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETH-----SADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence 468999999999999987654 8999999764 4554555 47899999998753
No 25
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.50 E-value=0.11 Score=55.30 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=44.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
...+.+++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.+..
T Consensus 143 ~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 198 (543)
T PRK06263 143 YLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPI-----YAKATILATGGAGQ 198 (543)
T ss_pred HHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEE-----EcCcEEECCCCCCC
Confidence 344579999999999999987653 699999876 46665566 36999999999874
No 26
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.42 E-value=0.1 Score=56.12 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=43.3
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
..+.+++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.++.
T Consensus 159 ~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 213 (598)
T PRK09078 159 SLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRF-----RAHMVVLATGGYGR 213 (598)
T ss_pred HhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcc
Confidence 44578999999999999987644 899999864 35665566 36899999998875
No 27
>PRK06175 L-aspartate oxidase; Provisional
Probab=94.17 E-value=0.15 Score=52.62 Aligned_cols=51 Identities=12% Similarity=0.282 Sum_probs=40.2
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.|++|++++.|++|+.+++ +++||.+.+ +++.+++. +|.||||+|.+..
T Consensus 140 ~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~VILAtGG~~~ 190 (433)
T PRK06175 140 KRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKVTILATGGIGG 190 (433)
T ss_pred hcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCeEEEccCcccc
Confidence 457999999999999987654 799988765 45544553 6899999998764
No 28
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.10 E-value=0.13 Score=54.89 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
...+.+++|++++.|++|+.++ + +++||.+.+ .+|+...+ .+|.||||+|.+..
T Consensus 128 ~~~~~gi~i~~~~~~~~Li~~~-g----~v~Ga~~~~~~~g~~~~i-----~AkaVILATGG~~~ 182 (565)
T TIGR01816 128 QNLKADTSFFNEYFALDLLMED-G----ECRGVIAYCLETGEIHRF-----RAKAVVLATGGYGR 182 (565)
T ss_pred HHHhCCCEEEeccEEEEEEeeC-C----EEEEEEEEEcCCCcEEEE-----EeCeEEECCCCccc
Confidence 3456789999999999999864 3 899999865 35665566 37999999998764
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.06 E-value=0.13 Score=55.72 Aligned_cols=53 Identities=17% Similarity=0.349 Sum_probs=42.4
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
..+.|++|++++.|++|+.+++ +++||.+.+. +|+.+.+ .+|.||||+|.+..
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 4467999999999999998753 8999999763 4554555 47899999998775
No 30
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=93.85 E-value=0.16 Score=54.96 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=42.9
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.+.|++|++++.|++|+.++++ +++||.+.+ .+|+.+.+ .+|.||||+|.+..
T Consensus 175 ~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 175 QSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 344579999999999999985444 899999865 35665555 47999999998764
No 31
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.84 E-value=0.2 Score=53.83 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=43.0
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+...+++|++++.|++|+.++++ +++||.+.+ .+|+.+.++ +|.||||+|.+..
T Consensus 153 ~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 153 NLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred hhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 34578999999999999987554 899999864 356655663 6999999998774
No 32
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.46 E-value=0.19 Score=54.42 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=43.0
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+.+.|++|+.++.|++|+.++++ +++||.+.+. +|+.+.+ .+|.||||+|.+.-
T Consensus 197 a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~ 251 (635)
T PLN00128 197 AMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGR 251 (635)
T ss_pred HHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCcc
Confidence 34568999999999999987544 8999998753 5665666 47999999998774
No 33
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=93.34 E-value=0.27 Score=52.68 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=42.9
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+.+++|++++.|++|+.+++ +++||.+.+. +....+. +++.||||+|.+..-.-+
T Consensus 224 ~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 224 ALDLGIPILTGTPARELLTEGG-----RVVGARVIDA-GGERRIT----ARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcC-CceEEEE----eCCEEEEcCCCccchHHH
Confidence 4567899999999999998754 7999998763 3334443 457899999998744333
No 34
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.31 E-value=0.24 Score=52.98 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcC
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
..+.+++++.++.|++|+.+++ +++||.+.+. +|+.+.+ .+|.||||+|.+.
T Consensus 146 ~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 146 TSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 3446899999999999998753 8999999764 3444455 4799999999987
No 35
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=93.16 E-value=0.26 Score=51.97 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=43.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch-HHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP-QLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP-~LLl 175 (458)
.+...+++|++++.|++|+.+++ +++||.+...+|+..++ .++.||||+|.+... .+|.
T Consensus 199 ~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 199 NVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSKAVVVTTGGFGANKDMIA 258 (506)
T ss_pred HHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecCeEEEeCCCcccCHHHHH
Confidence 33456899999999999986543 79999987544455555 479999999988754 4443
No 36
>PRK08275 putative oxidoreductase; Provisional
Probab=92.90 E-value=0.28 Score=52.36 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=41.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
.+.+.+++|+.++.|++|+.++++ +++||.+.+ .+|+...+ .+|.||||+|.+.
T Consensus 146 ~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~ 200 (554)
T PRK08275 146 QLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAG 200 (554)
T ss_pred HHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCcc
Confidence 344579999999999999987444 799998764 35654555 4789999999864
No 37
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=92.85 E-value=0.23 Score=57.62 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=43.8
Q ss_pred CCCeEEEcccEEEEEEEecCC----CCCCeEEEEEEEeC---CCceeEEEeccCCCceEEEcCCCcCch
Q 012707 110 PSGLTLLLHASVHKVLFRIKG----KARPVAHGVVFRDA---TGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~----~~~~~a~GV~~~~~---~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
+.+++|++++.|++|+.++++ ....+++||++.+. +|+...+ .+|.||||+|.++.-
T Consensus 559 ~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i-----~AkaVILATGGf~~N 622 (1167)
T PTZ00306 559 SGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDL-----LADAVILATGGFSND 622 (1167)
T ss_pred cCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEE-----EeceEEEecCCcccC
Confidence 368999999999999987521 00127999999865 6666666 369999999999874
No 38
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.72 E-value=0.34 Score=52.49 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=38.8
Q ss_pred CeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 112 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 112 nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
|++|+.++.|++|+.+++ +++||.+.+ .+|+...+ .+|.||||+|.++.
T Consensus 165 ~v~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 214 (626)
T PRK07803 165 RIKVFAECTITELLKDGG-----RIAGAFGYWRESGRFVLF-----EAPAVVLATGGIGK 214 (626)
T ss_pred ceEEEeCCEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EcCeEEECCCcccC
Confidence 499999999999998753 799998765 34555555 47999999998764
No 39
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.70 E-value=0.3 Score=52.50 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=40.2
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+++|+.++.|++|+.++++ +++||.+.+. +|+.+.+ .+|.||||+|.+..
T Consensus 150 ~~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 150 GLVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CCcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 35899999999999987554 8999999864 3444444 47999999998774
No 40
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=92.60 E-value=0.18 Score=51.67 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=42.8
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
..++||++|+.++.+.+|+.+++. .+.||.+.+.+++...+ .++.||||+|.++
T Consensus 143 v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 143 VRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 556799999999999999998873 46699998643434455 4899999999764
No 41
>PRK07395 L-aspartate oxidase; Provisional
Probab=92.34 E-value=0.2 Score=53.44 Aligned_cols=52 Identities=13% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCCCeEEEcccEEEEEEEec-CCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~-~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+++|++|++++.|++|+.++ ++ +++||.+.. +|+...+ .+|.||||+|.++.
T Consensus 146 ~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~ 198 (553)
T PRK07395 146 QRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ 198 (553)
T ss_pred hcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence 45799999999999999875 24 799998875 5655555 47999999998653
No 42
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.33 E-value=0.34 Score=51.51 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=42.5
Q ss_pred cCCCCeEEEcccEEEEEEEecCC-CCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKG-KARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~-~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
...+|++|++++.|++++.++.. .+..+++||.+.+. +|+...+ .++.||||+|.+..
T Consensus 149 ~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 149 RNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred HhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 34579999999999999886410 00028999998753 4655556 47999999999864
No 43
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=92.25 E-value=0.34 Score=52.74 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=42.9
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.+.+++|+.++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|.+..
T Consensus 167 ~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i-----~AkaVVLATGG~g~ 221 (657)
T PRK08626 167 EAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAY-----VAKATLIATGGYGR 221 (657)
T ss_pred HHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCeEEECCCcccC
Confidence 34457999999999999998754 799999976 46665555 37999999998663
No 44
>PLN02815 L-aspartate oxidase
Probab=92.23 E-value=0.29 Score=52.62 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=41.4
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.+|++|+.++.|++|+.++++ +..+++||.+.+ .+|+...+ .+|.||||+|.+.
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g 222 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRF-----ISKVTLLASGGAG 222 (594)
T ss_pred hcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEE-----EeceEEEcCCcce
Confidence 4579999999999999987542 011489999865 35655555 3799999999876
No 45
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.17 E-value=0.36 Score=51.48 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=40.3
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe--CC------------CceeEEEeccCCCceEEEcCCCcCc-hHHH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD--AT------------GAKHRAYLKNGPKNEIIVSAGALGS-PQLL 174 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~--~~------------g~~~~v~~~~~~~~eVILsAGai~S-P~LL 174 (458)
..+++|++++.|++|+.++ + +++||.+.+ .+ ++..++ .+|-||||+|.++. +.++
T Consensus 164 ~~gv~i~~~t~~~~Li~~~-g----~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i-----~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVTD-G----AVTGVRGTVLEPSDAERGEASSREVVGEFEL-----RAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred hCCceEEecCEeeEEEEeC-C----EEEEEEEEecccccccccccccccccceEEE-----ecCEEEEeCCCcccCHHHH
Confidence 4579999999999999874 3 899999742 11 122344 36899999999884 4444
Q ss_pred H
Q 012707 175 M 175 (458)
Q Consensus 175 l 175 (458)
.
T Consensus 234 ~ 234 (549)
T PRK12834 234 R 234 (549)
T ss_pred H
Confidence 3
No 46
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.16 E-value=0.42 Score=51.45 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=42.1
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+...+++++.++.|++|+.++++ +++||.+.+. +|+...+ .+|.||||+|.+..
T Consensus 158 ~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 158 NVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 34578999999999999987554 7999998653 4544455 47999999998764
No 47
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.02 E-value=0.43 Score=51.11 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=41.4
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+.+.+++|+.++.|++|+.+++ +++||.+.+ .+|+...+ .+|.||||+|.+..
T Consensus 139 ~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 139 CLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFF-----RAKAVVLATGGYGR 192 (566)
T ss_pred HHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCeEEECCCcccC
Confidence 3345999999999999998753 799999865 35554555 47999999998763
No 48
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=91.67 E-value=0.58 Score=50.25 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=41.1
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
+.+|+++++++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||.|.+..
T Consensus 145 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 197 (582)
T PRK09231 145 KYPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR 197 (582)
T ss_pred cCCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence 346899999999999998754 799999864 35655555 47999999998763
No 49
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=91.54 E-value=0.25 Score=48.70 Aligned_cols=69 Identities=28% Similarity=0.326 Sum_probs=47.2
Q ss_pred CCCeeecHHHh---H-hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 94 QNGQRHTAADL---L-EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 94 ~~g~R~s~~~~---l-~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.+...++..+ | ..+.+.+.+|++++.|++|..+++ +++||+.. +|+ + .++.||+|+|+ .
T Consensus 139 ~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i-----~ad~vV~a~G~-~ 202 (358)
T PF01266_consen 139 PEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---I-----RADRVVLAAGA-W 202 (358)
T ss_dssp TTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---E-----EECEEEE--GG-G
T ss_pred cccccccccchhhhhHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---c-----ccceeEecccc-c
Confidence 44444554432 2 233445899999999999999887 68888873 342 4 36999999997 7
Q ss_pred chHHHHhhc
Q 012707 170 SPQLLMLSG 178 (458)
Q Consensus 170 SP~LLl~SG 178 (458)
|++||..+|
T Consensus 203 s~~l~~~~~ 211 (358)
T PF01266_consen 203 SPQLLPLLG 211 (358)
T ss_dssp HHHHHHTTT
T ss_pred ceeeeeccc
Confidence 888888776
No 50
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=91.50 E-value=0.53 Score=50.49 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=40.9
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
..+|++++.++.|++|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|.+.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTI-----LADAVVLATGGAG 195 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEE-----ecCEEEEcCCCCc
Confidence 447999999999999998754 799999865 35665555 4799999999866
No 51
>PRK08071 L-aspartate oxidase; Provisional
Probab=91.49 E-value=0.4 Score=50.63 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=40.8
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+++|++++.|++|+.+++ ++.||.+.+.+|+.+.+ .++.||||+|.+..
T Consensus 142 ~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRY-----YADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEE-----EcCeEEEecCCCcc
Confidence 6899999999999987653 79999987655655555 47999999999774
No 52
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.48 E-value=0.57 Score=50.26 Aligned_cols=55 Identities=20% Similarity=0.302 Sum_probs=42.1
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
..+.+.|++|++++.|++|+.+++ ++.||...+ .+|+.+.+ .+|.||||+|.+..
T Consensus 143 ~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~ 198 (575)
T PRK05945 143 NNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR 198 (575)
T ss_pred HHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence 334557999999999999988754 799998754 35554455 47999999999764
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.20 E-value=0.6 Score=50.19 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=41.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecC---CCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIK---GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~---~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
.+...|++|++++.|++|+.+++ + +++||.+.+ .+|+.+.+ .+|.||||+|.+.
T Consensus 149 ~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 206 (583)
T PRK08205 149 NCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVF-----HAKAVVFATGGSG 206 (583)
T ss_pred HHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEE-----EeCeEEECCCCCc
Confidence 34457899999999999998752 3 799999864 34554455 3799999999866
No 54
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=91.04 E-value=1.4 Score=45.18 Aligned_cols=64 Identities=31% Similarity=0.420 Sum_probs=48.3
Q ss_pred hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 104 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 104 ~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
++. ...++|++|..++.|+.|...+++ -.-|.+.+ ..|+...++ +|-|+|.||+ .+=.||+.||
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksg 252 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSG 252 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcC
Confidence 444 345679999999999999987764 34455543 246666774 8999999998 6788999998
No 55
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=90.47 E-value=0.89 Score=48.05 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=47.1
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.+.+.+.+|++++.|+.|..+++ +++||++.+. +|+..++ .++.||+|||+ .+.+|+...|
T Consensus 137 ~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i-----~a~~VVnAaG~-wa~~l~~~~g 198 (516)
T TIGR03377 137 DAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERI-----EAQVVINAAGI-WAGRIAEYAG 198 (516)
T ss_pred HHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEE-----EcCEEEECCCc-chHHHHHhcC
Confidence 44556899999999999988665 6899998652 4555566 37999999997 5778876655
No 56
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=90.40 E-value=0.84 Score=49.44 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=47.5
Q ss_pred hhcCCCCeEEEcccEEEEEEEec-CCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 106 EYANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~-~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
..+.+.+.+|+.++.|++|..++ ++ +++||.+.+. +|+.+++ .++.||+|||+. +.+|+...|
T Consensus 240 ~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i-----~a~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 240 CTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDV-----YAKVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEE-----EeCEEEECCCHh-HHHHHHhcc
Confidence 34456689999999999998874 33 6899998763 4555556 379999999984 777777664
No 57
>PRK07512 L-aspartate oxidase; Provisional
Probab=89.80 E-value=0.57 Score=49.46 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+++++|+.++.|++|+.+++ +++||.+.+ ++....+ .++.||||+|.+..
T Consensus 148 ~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 148 ATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred hCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 346899999999999987643 799999875 3443444 37899999998763
No 58
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.77 E-value=0.95 Score=48.58 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
...+++++.++.|++|+.+++ +++||.+.+. +|+...+ .+|.||||+|.+.
T Consensus 149 ~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~ 200 (577)
T PRK06069 149 RFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAG 200 (577)
T ss_pred hcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhc
Confidence 347999999999999998754 7999998653 4544455 4799999999875
No 59
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=89.66 E-value=1.1 Score=47.79 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=46.4
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.+.+.+.++++++.|+.|..+++ +++||++.+. +|+..++ .++.||+|||+ .+.+|+...|
T Consensus 158 ~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~~~i-----~A~~VVnAaG~-wa~~l~~~~g 219 (546)
T PRK11101 158 DAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGETQEI-----HAPVVVNAAGI-WGQHIAEYAD 219 (546)
T ss_pred HHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcEEEE-----ECCEEEECCCh-hHHHHHHhcC
Confidence 34456899999999999988754 6999998753 3545566 37999999997 4777776555
No 60
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=89.36 E-value=0.86 Score=47.83 Aligned_cols=50 Identities=10% Similarity=0.230 Sum_probs=39.9
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+|++|+.++.|++|+.+++ +++||.+.+. +....+ .++.||||+|++..
T Consensus 141 ~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 141 HPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred cCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 47999999999999987653 7999998763 444444 47999999999774
No 61
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=89.28 E-value=1 Score=48.71 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
++.|++|+.++.|++|+.+++ +++||.+.+ .+|+...+ .++.||||+|.+.
T Consensus 144 ~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (608)
T PRK06854 144 KALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAA 195 (608)
T ss_pred hcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchh
Confidence 345799999999999988754 799998754 34554455 4799999999865
No 62
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=88.90 E-value=1.2 Score=48.00 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=39.3
Q ss_pred CCeEEEcccEEEEEEEecC--CCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 111 SGLTLLLHASVHKVLFRIK--GKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~--~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
.+.+|+.++.|++|+.+++ + +++||.+.+ .+|+.+.+ .+|.||||+|.+.
T Consensus 139 ~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 191 (614)
T TIGR02061 139 ALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVF-----KAKTVIVAAGGAV 191 (614)
T ss_pred CCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEE-----ECCEEEECCCccc
Confidence 3579999999999998753 3 799999865 35655555 3799999999875
No 63
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.70 E-value=0.52 Score=42.66 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=35.1
Q ss_pred hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhh
Q 012707 104 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 177 (458)
Q Consensus 104 ~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~S 177 (458)
|+. .+++-++++++++.|++|..+++ + --|++ .++ +++ .++.||||.|....|+++..-
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~-----~a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTI-----RADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EE-----EEEEEEE---SSCSB---S-T
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--cee-----eeeeEEEeeeccCCCCccccc
Confidence 665 45566888999999999999876 2 23444 344 334 279999999999999888644
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.77 E-value=1.5 Score=49.78 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.++++.+++.+.+|+.+++ +++||.+.+ .+|+.+.+ .+|.||||+|.++
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g 205 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTV-----GAKAVILATGPCG 205 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEE-----ECCEEEECCCccc
Confidence 35899999999999988743 799999865 35666666 4799999999865
No 65
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=87.56 E-value=1.5 Score=45.26 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=41.7
Q ss_pred hcCCCCeEEEcccEEEEEEEec-CCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRI-KGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~-~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+.+.+|++++.|++|+.+. ++ +++||.... ++ .++ .+|.||||+|.+...+=|+
T Consensus 132 ~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 132 SAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHH
Confidence 4455789999999999998863 33 799988742 22 344 3699999999987755443
No 66
>PRK07804 L-aspartate oxidase; Provisional
Probab=87.46 E-value=1.4 Score=46.81 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=40.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC----CCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~----~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
.+.+.+++|+.++.|++|+.++++ +++||.+.+. ++....+ .+|.||||+|.+..
T Consensus 153 ~~~~~gV~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~~~~~g~~~i-----~Ak~VIlATGG~~~ 211 (541)
T PRK07804 153 AVRADPLDIREHALALDLLTDGTG----AVAGVTLHVLGEGSPDGVGAV-----HAPAVVLATGGLGQ 211 (541)
T ss_pred HHHhCCCEEEECeEeeeeEEcCCC----eEEEEEEEeccCCCCCcEEEE-----EcCeEEECCCCCCC
Confidence 334456999999999999987654 7999998631 2223344 47999999998763
No 67
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=87.42 E-value=1.5 Score=44.85 Aligned_cols=58 Identities=14% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.+.+.+++.++.|+++.++++ ++++|... +++..++ .++.||||+|++-|..|+...+
T Consensus 274 ~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 274 EQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhhcC
Confidence 455889999999999998876 68887653 3322334 3789999999998998877655
No 68
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=85.11 E-value=4.7 Score=42.28 Aligned_cols=64 Identities=30% Similarity=0.416 Sum_probs=42.4
Q ss_pred hHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 104 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 104 ~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
++..+.+.+.+|+.++.|+.|..++++ ...|...+ ..|+..++ .++.||+|||+ .+.+|+...|
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~-----~v~v~~~~~~~g~~~~i-----~A~~VV~AAG~-~s~~La~~~G 248 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG-----SWTVTVKNTRTGGKRTL-----NTRFVFVGAGG-GALPLLQKSG 248 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-----eEEEEEeeccCCceEEE-----ECCEEEECCCc-chHHHHHHcC
Confidence 334444468999999999999875442 12233322 23443445 37999999998 5777888776
No 69
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=84.34 E-value=3.9 Score=42.93 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=38.1
Q ss_pred CeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 112 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 112 nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
+++|++++.|+.|..+++ ....|.. .+| ++ .++.||+|||+ .|.+|+..+|
T Consensus 231 ~v~i~~~t~V~~I~~~~~-----~~~~V~T--~~G---~i-----~A~~VVvaAG~-~S~~La~~~G 281 (497)
T PTZ00383 231 KISINLNTEVLNIERSND-----SLYKIHT--NRG---EI-----RARFVVVSACG-YSLLFAQKMG 281 (497)
T ss_pred CEEEEeCCEEEEEEecCC-----CeEEEEE--CCC---EE-----EeCEEEECcCh-hHHHHHHHhC
Confidence 389999999999987644 2445543 244 34 37999999998 5888998887
No 70
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=84.21 E-value=1.4 Score=44.50 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=38.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
....+|++|+ +..|+.|..+++ ++.||... +|.. + .++.||||+|++....+.
T Consensus 105 l~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~-----~a~~vVlaTGtfl~G~~~ 157 (392)
T PF01134_consen 105 LESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--I-----EADAVVLATGTFLNGCIH 157 (392)
T ss_dssp HHTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--E-----EECEEEE-TTTGBTSEEE
T ss_pred HhcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--E-----ecCEEEEecccccCceee
Confidence 3457999997 678999999876 79999874 4653 3 379999999995544433
No 71
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=81.99 E-value=6.7 Score=40.20 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=43.6
Q ss_pred hHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 104 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 104 ~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
+...+...|.+|..++.|++|..++++ .+-+.. .+|+++ + .+|-||.|||. .+-+|++.+|
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg-----~~~~~~--~~g~~~-~-----~ak~Vin~AGl-~Ad~la~~~g 219 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDG-----VFVLNT--SNGEET-L-----EAKFVINAAGL-YADPLAQMAG 219 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCc-----eEEEEe--cCCcEE-E-----EeeEEEECCch-hHHHHHHHhC
Confidence 444333459999999999999987662 222222 356554 5 47999999996 7788999998
No 72
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=81.74 E-value=3.3 Score=42.55 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=40.3
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 173 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~L 173 (458)
...+.+.+|++++.|+++..+++ ++++|. . .+|+...+ .++.||||+|.+.+.-|
T Consensus 268 ~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~-~-~~g~~~~i-----~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 268 AFERLGGRIMPGDEVLGAEFEGG-----RVTAVW-T-RNHGDIPL-----RARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHhCCCEEEeCCEEEEEEEeCC-----EEEEEE-e-eCCceEEE-----ECCEEEEeCCCcccCce
Confidence 44456899999999999987754 566665 2 24555555 37999999998766544
No 73
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=81.15 E-value=6.8 Score=41.19 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=40.0
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
..+++|++++.|+.|..++++ + ..|...+ ..|+..++ .++.||+|||+ .|.+|+..+|
T Consensus 196 ~Ggv~i~~~teV~~I~~~~dg----~-~~v~~~~~~~G~~~~i-----~A~~VVvaAGg-~s~~L~~~~G 254 (494)
T PRK05257 196 QGNFELQLGHEVRDIKRNDDG----S-WTVTVKDLKTGEKRTV-----RAKFVFIGAGG-GALPLLQKSG 254 (494)
T ss_pred CCCeEEEeCCEEEEEEECCCC----C-EEEEEEEcCCCceEEE-----EcCEEEECCCc-chHHHHHHcC
Confidence 345999999999999875543 2 2344332 23443345 37999999998 5777888877
No 74
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=80.88 E-value=3 Score=43.78 Aligned_cols=55 Identities=22% Similarity=0.213 Sum_probs=41.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
...+.+.+|++++.|++|..+++ ++.||... +|+. + .++.||+++|...+=+.|+
T Consensus 238 ~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 238 GLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHHHHHhC
Confidence 34556899999999999998764 68999874 4542 3 3688999999866654443
No 75
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=80.80 E-value=3 Score=43.79 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=47.4
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
...+.++++.+.|+++..+++ ++||++.|. .|+++.++ ++.||-|||. .+-+|+...+
T Consensus 175 ~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~ 233 (532)
T COG0578 175 AEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAG 233 (532)
T ss_pred HhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhc
Confidence 346899999999999988764 999999874 47788885 8999999997 5667777665
No 76
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=80.18 E-value=4 Score=38.90 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=38.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC----CC---ceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~----~g---~~~~v~~~~~~~~eVILsAGa 167 (458)
.+...|.+|+.++.|+.|..++++ +++||.+... .| ...++ .+|.||+|+|.
T Consensus 113 ~A~~~Gv~I~~~t~V~dl~~~~~g----~V~Gvv~~~~~v~~~g~~~~~~~i-----~Ak~VI~ATG~ 171 (257)
T PRK04176 113 AAIDAGAKIFNGVSVEDVILREDP----RVAGVVINWTPVEMAGLHVDPLTI-----EAKAVVDATGH 171 (257)
T ss_pred HHHHcCCEEEcCceeceeeEeCCC----cEEEEEEccccccccCCCCCcEEE-----EcCEEEEEeCC
Confidence 334569999999999999887653 6899987431 12 23445 47999999995
No 77
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=79.30 E-value=4.2 Score=42.74 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=40.9
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
..+.+.+|++++.|++|..+++ +++||+.. +|+. + .++.||+|++...+-..|+
T Consensus 229 ~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 229 AEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHHHHHhc
Confidence 3445899999999999998764 68899874 4543 3 3688999999877776654
No 78
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=79.07 E-value=3.8 Score=42.35 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=35.7
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCcee-EEEeccCCCceEEEcCCC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKH-RAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~-~v~~~~~~~~eVILsAGa 167 (458)
..+.+|++++.|++|..++++ +++||++.+.+|++. ++ .++.||+++..
T Consensus 225 ~~g~~i~l~~~V~~I~~~~~~----~v~~v~~~~~~~~~~~~~-----~a~~VI~a~p~ 274 (453)
T TIGR02731 225 SRGGEVRLNSRLKEIVLNEDG----SVKHFVLADGEGQRRFEV-----TADAYVSAMPV 274 (453)
T ss_pred hcCCEEeCCCeeEEEEECCCC----CEEEEEEecCCCCceeEE-----ECCEEEEcCCH
Confidence 347799999999999876554 689999865333222 34 47899999865
No 79
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=78.85 E-value=9.2 Score=40.18 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=47.0
Q ss_pred CCCeeecHHH----hHhhc-CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCC
Q 012707 94 QNGQRHTAAD----LLEYA-NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 94 ~~g~R~s~~~----~l~~~-~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+++...+... +...+ ..++++|++++.|+.|..++++ .. -|.+.+ ..|+..++ .++.||+|||+
T Consensus 176 p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~----~w-~v~v~~t~~g~~~~i-----~Ad~VV~AAGa 245 (497)
T PRK13339 176 DEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDG----GW-EVTVKDRNTGEKREQ-----VADYVFIGAGG 245 (497)
T ss_pred CCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCC----CE-EEEEEecCCCceEEE-----EcCEEEECCCc
Confidence 5555554432 33333 4568999999999999876332 12 233322 23432345 37999999998
Q ss_pred cCchHHHHhhc
Q 012707 168 LGSPQLLMLSG 178 (458)
Q Consensus 168 i~SP~LLl~SG 178 (458)
.|-+|+..+|
T Consensus 246 -wS~~La~~~G 255 (497)
T PRK13339 246 -GAIPLLQKSG 255 (497)
T ss_pred -chHHHHHHcC
Confidence 7788898887
No 80
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=77.32 E-value=4.7 Score=42.22 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=39.8
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
.+.+.+|++++.|++|+.+++ +++||...+. .|+...+ .++.||+++..-.+.+||
T Consensus 243 ~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~ll 299 (492)
T TIGR02733 243 KRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLELL 299 (492)
T ss_pred HhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHHhc
Confidence 346889999999999998875 6889987642 1222334 378999999875555533
No 81
>PLN02661 Putative thiazole synthesis
Probab=75.80 E-value=6.9 Score=39.07 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=37.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEE------eCCC----ceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR------DATG----AKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~------~~~g----~~~~v~~~~~~~~eVILsAGa 167 (458)
...++|++|+.++.|+.|+.+++ ++.||.+. +.++ ....+ .+|.||||+|.
T Consensus 182 a~~~~gVkI~~~t~V~DLI~~~g-----rVaGVVvnw~~v~~~~~~~s~~dp~~I-----~AkaVVlATGh 242 (357)
T PLN02661 182 LLARPNVKLFNAVAAEDLIVKGD-----RVGGVVTNWALVAQNHDTQSCMDPNVM-----EAKVVVSSCGH 242 (357)
T ss_pred HHhcCCCEEEeCeEeeeEEecCC-----EEEEEEeecchhhhccCCCCccceeEE-----ECCEEEEcCCC
Confidence 44568999999999999998765 79999862 1111 11234 48999999995
No 82
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=75.49 E-value=0.9 Score=46.80 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=0.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.+...|++|+.++.|..|+.+++ +++||.+.+..| ..++ .++.||-|.| ...|+-++|
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG---~g~l~~~aG 156 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATG---DGDLAALAG 156 (428)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-cccc-----cccccccccc---ccccccccc
Confidence 34557999999999999999875 799999987555 5666 4899999999 368888888
No 83
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.06 E-value=7.9 Score=40.77 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=42.2
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+.+.+++.++.|+.|..+++ ..+|...+..|+++++. ++.||.|+|+ .+.+|+.
T Consensus 164 ~a~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~g~~~~i~-----a~~VVnAaG~-wa~~l~~ 220 (502)
T PRK13369 164 DAAERGATILTRTRCVSARREGG------LWRVETRDADGETRTVR-----ARALVNAAGP-WVTDVIH 220 (502)
T ss_pred HHHHCCCEEecCcEEEEEEEcCC------EEEEEEEeCCCCEEEEE-----ecEEEECCCc-cHHHHHh
Confidence 34456899999999999987643 45677765446666664 7999999997 4666655
No 84
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=74.98 E-value=2.8 Score=44.65 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcC-----chHHHHhhc----
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG-----SPQLLMLSG---- 178 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~-----SP~LLl~SG---- 178 (458)
+..+++++.+..|.+|+.++++ .+.||...+. +|+.+.+ .+|.||||.|..+ |+-....+|
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~-----~akavilaTGG~g~~~~~~t~~~~~tGdG~~ 220 (562)
T COG1053 150 KFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVF-----RAKAVILATGGAGRLYPYTTNAHIGTGDGVA 220 (562)
T ss_pred HhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEE-----ecCcEEEccCCceEEEeccCCccccCCcHHH
Confidence 3367899999999999998764 4889988764 4555555 3699999999988 666666654
Q ss_pred ---CCCcceeecCCccCCCCCCCCCc
Q 012707 179 ---AHNITVVLDQPLVGQGMSDNPMN 201 (458)
Q Consensus 179 ---~~gI~~~~d~p~VG~nl~dH~~~ 201 (458)
.+|.+ .. ..++.|-||..
T Consensus 221 ma~~aGa~-l~----dme~~Q~hpt~ 241 (562)
T COG1053 221 MAYRAGAP-LI----DMEFVQFHPTG 241 (562)
T ss_pred HHHhcCCc-cc----CCCccccccce
Confidence 66665 11 44567888764
No 85
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=74.40 E-value=9 Score=40.41 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=41.0
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
+.+.+.+++.++.|+.|..+++ ..+|.+.+ .+|+..++ .++.||+|+|+ .+.+|+.
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~~------~~~v~~~~~~~g~~~~i-----~a~~VVnAaG~-wa~~l~~ 221 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRENG------LWHVTLEDTATGKRYTV-----RARALVNAAGP-WVKQFLD 221 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeCC------EEEEEEEEcCCCCEEEE-----EcCEEEECCCc-cHHHHHh
Confidence 4456899999999999876643 45777764 24555666 48999999997 4666654
No 86
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=73.25 E-value=6.6 Score=38.43 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=35.1
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
..+...+.+++.++.|+.|..+++ ++++|... +| ++ .++.||+|+|+
T Consensus 145 ~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g---~~-----~a~~vV~a~G~ 191 (337)
T TIGR02352 145 KALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG---DV-----QADQVVLAAGA 191 (337)
T ss_pred HHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC---EE-----ECCEEEEcCCh
Confidence 344456899999999999987654 57888642 33 34 37999999997
No 87
>PRK06185 hypothetical protein; Provisional
Probab=73.10 E-value=11 Score=38.22 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=37.9
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
..+|++++.++.|+.|..+++ +++||.+...+|+ .++ .++.||.|.|+-
T Consensus 120 ~~~~v~i~~~~~v~~~~~~~~-----~v~~v~~~~~~g~-~~i-----~a~~vI~AdG~~ 168 (407)
T PRK06185 120 AYPNFTLRMGAEVTGLIEEGG-----RVTGVRARTPDGP-GEI-----RADLVVGADGRH 168 (407)
T ss_pred hCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEcCCCc-EEE-----EeCEEEECCCCc
Confidence 457999999999999988765 5888888653443 345 379999999974
No 88
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=72.94 E-value=13 Score=38.55 Aligned_cols=58 Identities=22% Similarity=0.505 Sum_probs=46.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
.++..++....+++|+.|.++.++ +.++|+++++.. +|+..++.+ ...+.|++.-|.+
T Consensus 216 ~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l--~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 216 YLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDL--GPDDLVFVTNGSM 273 (500)
T ss_pred HHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEe--CCCCEEEEECCcc
Confidence 456679999999999999998654 345899999985 777777654 4889999999964
No 89
>PRK07208 hypothetical protein; Provisional
Probab=72.31 E-value=7.6 Score=40.43 Aligned_cols=56 Identities=21% Similarity=0.196 Sum_probs=38.5
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+.+|++++.|++|..++++ .+++|.+.+.+|+..++ .++.||++.-.-...++|
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~~----~v~~~~~~~~~g~~~~~-----~ad~VI~a~p~~~l~~~l 285 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGDG----RIAVVVVNDTDGTEETV-----TADQVISSMPLRELVAAL 285 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCCc----EEEEEEEEcCCCCEEEE-----EcCEEEECCCHHHHHHhc
Confidence 457899999999999998764 56666665445654455 368888887754444443
No 90
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=72.26 E-value=7.6 Score=40.57 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+.+|++++.|++|..++++++..+++||++.+.++ ...+ .++.||+|..+-...+||-
T Consensus 230 ~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~-~~~~-----~aD~VVlA~p~~~~~~Ll~ 290 (474)
T TIGR02732 230 EARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEG-KKVI-----KADAYVAACDVPGIKRLLP 290 (474)
T ss_pred HHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCc-ceEE-----ECCEEEECCChHHHHhhCC
Confidence 34688999999999999875210111488998853222 1234 3789999999877777763
No 91
>PLN02487 zeta-carotene desaturase
Probab=71.37 E-value=7.4 Score=41.62 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=41.6
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+.+.+|++++.|++|+.+.++.+..+++||++.. ++....+ .++.||++++.-...+||
T Consensus 305 L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 305 ITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 345688999999999999985321112589999852 2333334 368999999876555544
No 92
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=71.01 E-value=22 Score=35.96 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCCCcccCCCceeeeeeEECCCCeeecHH-H-hHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEE
Q 012707 60 SAVRDGLVEVGVLPYNGFTYDHMYGTKIGGTIFDQNGQRHTAA-D-LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAH 137 (458)
Q Consensus 60 ~~~~~~~~~~G~~~~n~~~~d~~~g~~~g~~~~~~~g~R~s~~-~-~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~ 137 (458)
..+.+-++++|+... ....|. +++.. .++++. . ++..+.+.|++|++++.|+.| +++ -.
T Consensus 57 ~d~~~fF~~~Gi~~~-----~e~~gr-----vfP~S-~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~------~~ 117 (376)
T TIGR03862 57 VALQDWARGLGIETF-----VGSSGR-----VFPVE-MKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG------TL 117 (376)
T ss_pred HHHHHHHHHCCCceE-----ECCCCE-----ECCCC-CCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC------cE
Confidence 346677778888421 111222 23223 233332 2 334566789999999999998 332 23
Q ss_pred EEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHH
Q 012707 138 GVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 173 (458)
Q Consensus 138 GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~L 173 (458)
+|... .+. ..+ .++.||||+|..-.|++
T Consensus 118 ~v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~ 145 (376)
T TIGR03862 118 RFETP--DGQ-STI-----EADAVVLALGGASWSQL 145 (376)
T ss_pred EEEEC--CCc-eEE-----ecCEEEEcCCCcccccc
Confidence 45442 222 224 47999999999887754
No 93
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=70.78 E-value=11 Score=38.26 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=39.6
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
..+.+.+.+++.++.|+.|..++++ ++++|+.. +| ++ .++.||+|||+. ++.|+...|
T Consensus 191 ~~a~~~Gv~~~~~~~V~~i~~~~~~----~~~~v~t~--~g---~i-----~a~~vVvaagg~-~~~l~~~~g 248 (407)
T TIGR01373 191 RGADRRGVDIIQNCEVTGFIRRDGG----RVIGVETT--RG---FI-----GAKKVGVAVAGH-SSVVAAMAG 248 (407)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCC----cEEEEEeC--Cc---eE-----ECCEEEECCChh-hHHHHHHcC
Confidence 3445568999999999999765333 56777653 34 24 368899999984 555655444
No 94
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=68.92 E-value=11 Score=38.32 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=37.7
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
..+.+.+.+|++++.|++|..+++ ++++|+.. ++ ++ .++.||+|+|+. +..|+.
T Consensus 209 ~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~v~t~--~~---~~-----~a~~VV~a~G~~-~~~l~~ 262 (416)
T PRK00711 209 AMAEQLGVKFRFNTPVDGLLVEGG-----RITGVQTG--GG---VI-----TADAYVVALGSY-STALLK 262 (416)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCC-----EEEEEEeC--Cc---EE-----eCCEEEECCCcc-hHHHHH
Confidence 344557899999999999987654 46666542 23 34 379999999984 455554
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=68.40 E-value=9.7 Score=38.95 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=33.7
Q ss_pred hHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 104 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 104 ~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
++..+.+.+++|++++.|+.|..+++ .+.+|+. + +++ .+ .++.||||+|...-|+
T Consensus 115 L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~-~-~~~--~~-----~a~~vILAtGG~S~p~ 169 (409)
T PF03486_consen 115 LLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKT-K-NGG--EY-----EADAVILATGGKSYPK 169 (409)
T ss_dssp HHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEE-T-TTE--EE-----EESEEEE----SSSGG
T ss_pred HHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeec-c-Ccc--cc-----cCCEEEEecCCCCccc
Confidence 33344567999999999999998876 4777777 2 333 23 3799999999988886
No 96
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=67.50 E-value=3.5 Score=42.91 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=53.7
Q ss_pred CCCeeecHHHh--Hh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcC
Q 012707 94 QNGQRHTAADL--LE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 94 ~~g~R~s~~~~--l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
.+|+-..+..- +. -+.|.+.+++-...|.+++.|+++ ++.|++++|. .|++++++ +|.||=|+|.+.
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs 287 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS 287 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence 35555544321 22 234678999999999999998876 8999999873 68999995 899999999876
Q ss_pred chHHHH
Q 012707 170 SPQLLM 175 (458)
Q Consensus 170 SP~LLl 175 (458)
-.-..|
T Consensus 288 DsIr~M 293 (680)
T KOG0042|consen 288 DSIRKM 293 (680)
T ss_pred HHHHhh
Confidence 544444
No 97
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=67.39 E-value=17 Score=36.90 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=37.5
Q ss_pred HhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCc-eeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 105 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGA-KHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 105 l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~-~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
+..+.+.+.+|++++.|++|..+++ .+ .|.+.+.++. ..++ .++.||+|+|+ .++.|+.
T Consensus 204 ~~~a~~~G~~i~~~~~V~~i~~~~~-----~~-~v~~~~~~~~~~~~i-----~a~~vV~a~G~-~s~~l~~ 263 (410)
T PRK12409 204 AAACARLGVQFRYGQEVTSIKTDGG-----GV-VLTVQPSAEHPSRTL-----EFDGVVVCAGV-GSRALAA 263 (410)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEeCC-----EE-EEEEEcCCCCccceE-----ecCEEEECCCc-ChHHHHH
Confidence 3444567999999999999986554 23 2433332110 2234 37999999997 4555554
No 98
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=65.74 E-value=19 Score=36.32 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=38.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.+.+.+.+++.++.|++|..+++ . ..|+. .+| ++ .++.||+|+|+ .|+.++...|
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~-----~-~~V~~--~~g---~i-----~ad~vV~A~G~-~s~~l~~~~g 212 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHAN-----G-VVVRT--TQG---EY-----EARTLINCAGL-MSDRLAKMAG 212 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCC-----e-EEEEE--CCC---EE-----EeCEEEECCCc-chHHHHHHhC
Confidence 44456899999999999876544 2 24443 233 34 37999999998 6788887665
No 99
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=65.54 E-value=32 Score=34.79 Aligned_cols=55 Identities=22% Similarity=0.321 Sum_probs=39.5
Q ss_pred hHhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHH
Q 012707 104 LLEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 173 (458)
Q Consensus 104 ~l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~L 173 (458)
++...++.|++|++++.|..|..++. +-.+..++|+ ++ .++.+|||.|...-|++
T Consensus 117 ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i-----~~d~lilAtGG~S~P~l 171 (408)
T COG2081 117 LLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TV-----KCDSLILATGGKSWPKL 171 (408)
T ss_pred HHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EE-----EccEEEEecCCcCCCCC
Confidence 44455678999999999999987753 2333344565 44 37999999998777753
No 100
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=64.45 E-value=10 Score=36.57 Aligned_cols=60 Identities=25% Similarity=0.282 Sum_probs=42.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
+.++.|++++.+. |..|. |.+. |+++|-+....+..+.. ....||||||. -|++||..-+
T Consensus 157 a~k~~~V~lv~Gk-v~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~r 216 (380)
T KOG2852|consen 157 AEKRGGVKLVFGK-VKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTR 216 (380)
T ss_pred HHhhcCeEEEEee-eEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhccccc
Confidence 6678899999994 66665 4443 78888776432322222 46899999998 7899998766
No 101
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=63.63 E-value=15 Score=39.51 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=35.6
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
..+|++|+ ++.|+.|..+++ +++||... +|. .+ .++.||+|+|++-.
T Consensus 112 ~~~nV~I~-q~~V~~Li~e~g-----rV~GV~t~--dG~--~I-----~Ak~VIlATGTFL~ 158 (618)
T PRK05192 112 NQPNLDLF-QGEVEDLIVENG-----RVVGVVTQ--DGL--EF-----RAKAVVLTTGTFLR 158 (618)
T ss_pred cCCCcEEE-EeEEEEEEecCC-----EEEEEEEC--CCC--EE-----ECCEEEEeeCcchh
Confidence 46799986 667999988765 69999874 453 34 37999999998543
No 102
>PLN02985 squalene monooxygenase
Probab=63.29 E-value=23 Score=37.38 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=38.9
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
.+.+|+++..+ .|+.++.+++ .++||++...+|++.++ .++.||.|.|....-|
T Consensus 158 ~~~~~V~i~~g-tvv~li~~~~-----~v~gV~~~~~dG~~~~~-----~AdLVVgADG~~S~vR 211 (514)
T PLN02985 158 SSLPNVRLEEG-TVKSLIEEKG-----VIKGVTYKNSAGEETTA-----LAPLTVVCDGCYSNLR 211 (514)
T ss_pred HhCCCeEEEee-eEEEEEEcCC-----EEEEEEEEcCCCCEEEE-----ECCEEEECCCCchHHH
Confidence 34579999865 5777766543 68899997656766666 3799999999755443
No 103
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=62.99 E-value=6.8 Score=40.01 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=41.4
Q ss_pred HhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 105 LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 105 l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
.+.+.+.+.+|.|++.|.+|++|.+ +|.||... +|++ ++ +|.||=-|+-..|=
T Consensus 271 a~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~e--v~-----sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 271 AEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTE--VR-----SKIVVSNATPWDTF 323 (561)
T ss_pred HHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcE--EE-----eeeeecCCchHHHH
Confidence 3456778999999999999999984 89999996 4654 42 57777777766665
No 104
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=62.96 E-value=21 Score=35.80 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=31.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+.+ +.+++.++.|+.|..+++ + .+|+ ..+|.. + .++.||+|+|+
T Consensus 144 ~~~~-G~~i~~~~~V~~i~~~~~-----~-~~v~--t~~g~~--~-----~a~~vV~a~G~ 188 (381)
T TIGR03197 144 HAGI-RLTLHFNTEITSLERDGE-----G-WQLL--DANGEV--I-----AASVVVLANGA 188 (381)
T ss_pred ccCC-CcEEEeCCEEEEEEEcCC-----e-EEEE--eCCCCE--E-----EcCEEEEcCCc
Confidence 4456 999999999999987543 2 3343 334532 3 37999999996
No 105
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=62.77 E-value=15 Score=38.30 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=41.8
Q ss_pred hHh-hcCCCCeE--EEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 104 LLE-YANPSGLT--LLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 104 ~l~-~~~r~nl~--v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
||. .+++-++. |..++.|++|..+++ -.-|...+.++...+. ..+.||||.|....|++.-.-|
T Consensus 116 YL~~~a~~fgl~~~I~~~t~V~~V~~~~~------~w~V~~~~~~~~~~~~-----~~d~VIvAtG~~~~P~~P~ipG 182 (461)
T PLN02172 116 YLQDFAREFKIEEMVRFETEVVRVEPVDG------KWRVQSKNSGGFSKDE-----IFDAVVVCNGHYTEPNVAHIPG 182 (461)
T ss_pred HHHHHHHHcCCcceEEecCEEEEEeecCC------eEEEEEEcCCCceEEE-----EcCEEEEeccCCCCCcCCCCCC
Confidence 665 44555666 999999999976543 1223433322222222 3699999999999998887555
No 106
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=62.46 E-value=15 Score=39.39 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=39.1
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+|++++.+ .|+.++.++++ ++.||... +|. .+ .++.||||+|++...++..
T Consensus 107 e~~pgV~Ile~-~Vv~li~e~~g----~V~GV~t~--~G~--~I-----~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 107 ENQPNLSLFQG-EVEDLILEDND----EIKGVVTQ--DGL--KF-----RAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred HcCCCcEEEEe-EEEEEEEecCC----cEEEEEEC--CCC--EE-----ECCEEEEccCcccCCCEEe
Confidence 35579999865 68888776433 69999884 354 34 3799999999997665555
No 107
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=61.31 E-value=15 Score=36.51 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=35.2
Q ss_pred hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHH
Q 012707 104 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL 173 (458)
Q Consensus 104 ~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~L 173 (458)
|+. .+++=...|..+..|+.|..+.++ + ....-|+..+.+|....+. +|.|||+.| .+|.|
T Consensus 100 Yl~Wva~~~~~~v~~~~~V~~I~~~~~~-~-~~~~~V~~~~~~g~~~~~~-----ar~vVla~G--~~P~i 161 (341)
T PF13434_consen 100 YLRWVAEQLDNQVRYGSEVTSIEPDDDG-D-EDLFRVTTRDSDGDGETYR-----ARNVVLATG--GQPRI 161 (341)
T ss_dssp HHHHHHCCGTTTEEESEEEEEEEEEEET-T-EEEEEEEEEETTS-EEEEE-----ESEEEE------EE--
T ss_pred HHHHHHHhCCCceEECCEEEEEEEecCC-C-ccEEEEEEeecCCCeeEEE-----eCeEEECcC--CCCCC
Confidence 665 344433348889999999997753 1 1345566655567666664 799999999 56643
No 108
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=60.89 E-value=27 Score=36.90 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=44.2
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHh
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 176 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~ 176 (458)
.+|+++++++.|++|.-+++ ++++|++.+. +|+..++ .++.|++|.|..-.+.+|..
T Consensus 399 ~~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhh
Confidence 47999999999999975433 6889998753 4555556 47999999999887777754
No 109
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=60.74 E-value=34 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhh
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 177 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~S 177 (458)
.++++++++.|++|.-++ ++.+|++.+. +|+..++ .++.||+|.|....+.+|..+
T Consensus 190 ~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGDN------KVEGVKIKNTVTGEEEEL-----KVDGVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEccC------cEEEEEEEecCCCceEEE-----EccEEEEeeCCCCChHHHHHh
Confidence 499999999999986432 4778887642 3555556 479999999976666666544
No 110
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=59.96 E-value=20 Score=35.78 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=34.3
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
.+.+.+++++.++.|++|..+++ ++.+...+| ++ .++.||+|+|+. +..|+
T Consensus 158 ~~~~~gv~i~~~~~v~~i~~~~~--------~~~v~~~~g---~~-----~a~~vV~A~G~~-~~~l~ 208 (376)
T PRK11259 158 LAREAGAELLFNEPVTAIEADGD--------GVTVTTADG---TY-----EAKKLVVSAGAW-VKDLL 208 (376)
T ss_pred HHHHCCCEEECCCEEEEEEeeCC--------eEEEEeCCC---EE-----EeeEEEEecCcc-hhhhc
Confidence 34457999999999999987543 233333344 34 379999999974 44443
No 111
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.13 E-value=22 Score=35.29 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=46.2
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHHhh
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 177 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~S 177 (458)
.-+|++|++++.-+.|.=|++ +++|++|.+. .|+.+.+. -.-|.+--|-+-+..+|.-|
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~-----LeGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLE-----LEGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEE-----eeeeEEEEecccChhHhhch
Confidence 348999999999999987765 7999999874 46677774 35677777888888888744
No 112
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=57.70 E-value=6.8 Score=41.04 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=38.9
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
...+||+|+-+ .|+.|+++++. ++.||... +|..+ .++.|||++|+|-.-+|.
T Consensus 111 e~~~NL~l~q~-~v~dli~e~~~----~v~GV~t~--~G~~~-------~a~aVVlTTGTFL~G~I~ 163 (621)
T COG0445 111 ENQPNLHLLQG-EVEDLIVEEGQ----RVVGVVTA--DGPEF-------HAKAVVLTTGTFLRGKIH 163 (621)
T ss_pred hcCCCceehHh-hhHHHhhcCCC----eEEEEEeC--CCCee-------ecCEEEEeecccccceEE
Confidence 35689999988 47888886653 69999875 46532 379999999987655543
No 113
>PRK08401 L-aspartate oxidase; Provisional
Probab=57.16 E-value=25 Score=36.59 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCc-ccCCCCeeeccCCceEeeccc----CC-CCCCCChHHHHHHHHHHHHHHHHH
Q 012707 400 VGK-VVDHDYKVLGVDALRVIDGST----FY-YSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 400 MG~-VVD~~~rV~Gv~nL~V~DaSv----~P-~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
||| .||.++|. -++|||.+.-.. .- .-.++|..+-.+..+.++++.+.+
T Consensus 310 ~GGi~vd~~~~t-~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 310 IGGISVDTFYRT-GIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CCCEEECCCCcc-cCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 444 68999994 799999986543 21 113457777777778888887754
No 114
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.12 E-value=16 Score=38.27 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=36.8
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+...+.+|.+++.|++|+.+++ + ||.+...+| ..+ .++.||..+.. ..+..|.
T Consensus 233 ~~~~~Gg~I~~~~~V~~I~v~~g-----~--g~~~~~~~g--~~~-----~ad~vv~~~~~-~~~~~l~ 286 (487)
T COG1233 233 LAREHGGEIRTGAEVSQILVEGG-----K--GVGVRTSDG--ENI-----EADAVVSNADP-ALLARLL 286 (487)
T ss_pred HHHHcCCEEECCCceEEEEEeCC-----c--ceEEecccc--cee-----ccceeEecCch-hhhhhhh
Confidence 44567899999999999999886 4 455544345 333 46788877776 4443333
No 115
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=55.08 E-value=13 Score=37.23 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=41.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
++.-||+++.-+ +|..++-|++ .++||.|.+..|++.+.+ |..-|+|-|.+..
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSn 209 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSN 209 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHH
Confidence 445699998777 5777765554 799999998777776663 7899999998754
No 116
>PRK06126 hypothetical protein; Provisional
Probab=54.76 E-value=33 Score=36.40 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.+|++|+.++.|++|..+++ .++ |.+.+ .+|+..++. ++.||.|.|+-.
T Consensus 138 ~~~~v~i~~~~~v~~i~~~~~-----~v~-v~~~~~~~g~~~~i~-----ad~vVgADG~~S 188 (545)
T PRK06126 138 AQPGVTLRYGHRLTDFEQDAD-----GVT-ATVEDLDGGESLTIR-----ADYLVGCDGARS 188 (545)
T ss_pred hCCCceEEeccEEEEEEECCC-----eEE-EEEEECCCCcEEEEE-----EEEEEecCCcch
Confidence 457999999999999987765 244 45544 346656663 799999999743
No 117
>PRK07121 hypothetical protein; Validated
Probab=53.67 E-value=20 Score=37.64 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=41.3
Q ss_pred ccccCCc-ccCCC-Ceeec-----cCCceEee---cccCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q 012707 396 GGCQVGK-VVDHD-YKVLG-----VDALRVID---GSTFY-YSPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 396 GTcrMG~-VVD~~-~rV~G-----v~nL~V~D---aSv~P-~~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
-.+-||| ++|.+ +||-. ++|||.+. ++++- .-+++|.....+..+..+++++.++
T Consensus 425 ~~~T~GGl~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 425 PGFTLGGLRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ceeeccCeeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 3345665 79999 99997 89999998 45553 2246888888899999888877653
No 118
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=50.56 E-value=42 Score=31.83 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=40.8
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC----CC---ceeEEEeccCCCceEEEcCCC-cCchHHHHhh
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA----TG---AKHRAYLKNGPKNEIIVSAGA-LGSPQLLMLS 177 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~----~g---~~~~v~~~~~~~~eVILsAGa-i~SP~LLl~S 177 (458)
.+.+.+++.++.|+.|..+++. .+++||..... .| ...++ .+|.||.|.|. =.-.+.|..-
T Consensus 111 ~e~GV~I~~~t~V~dli~~~~~---~~V~GVv~~~~~v~~~g~~~d~~~i-----~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 111 LQAGAKIFNGTSVEDLITRDDT---VGVAGVVINWSAIELAGLHVDPLTQ-----RSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHcCCEEECCcEEEEEEEeCCC---CceEEEEeCCccccccCCCCCCEEE-----EcCEEEEeecCCchHHHHHHHH
Confidence 3457999999999999987652 26999987421 12 23445 47999999994 2334444443
No 119
>PLN02612 phytoene desaturase
Probab=49.42 E-value=28 Score=37.29 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+.+.+|++++.|++|..++++ ++++|++. +|+. + .++.||++...
T Consensus 320 ~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 320 SLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred hcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 357899999999999987654 67888874 4643 3 36889998753
No 120
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=48.89 E-value=32 Score=35.23 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=32.1
Q ss_pred ccCCCCeeeccCCceEe-ecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 012707 403 VVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA 453 (458)
Q Consensus 403 VVD~~~rV~Gv~nL~V~-DaSv~P~~~~~np~~ti~alA~r~A~~i~~~~~~ 453 (458)
.||+.+|+-+++|+|++ |++-++..+........+.-|..+|..|.++..+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999977 5555543222122223445566677766665433
No 121
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=48.39 E-value=12 Score=40.06 Aligned_cols=68 Identities=37% Similarity=0.551 Sum_probs=50.4
Q ss_pred CCceeeeeeEECCCCeeecHHHhHhhcCCCCeEEEcccEEEEEEEecCC---CCCCeEEEEEEEeCCCcee
Q 012707 82 MYGTKIGGTIFDQNGQRHTAADLLEYANPSGLTLLLHASVHKVLFRIKG---KARPVAHGVVFRDATGAKH 149 (458)
Q Consensus 82 ~~g~~~g~~~~~~~g~R~s~~~~l~~~~r~nl~v~t~~~V~rI~~~~~~---~~~~~a~GV~~~~~~g~~~ 149 (458)
..|...|.++.+.+|.|.+...+++...+.+.++.+...+.|+++.... .....++++.+.|+.|+..
T Consensus 219 ~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a 289 (623)
T KOG1238|consen 219 RAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRA 289 (623)
T ss_pred HhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceE
Confidence 3455666667778999999888888777888999999999999887321 1224688888888766643
No 122
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=48.15 E-value=32 Score=34.28 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=32.0
Q ss_pred ccCCCCeeeccCCceEee-cccCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 012707 403 VVDHDYKVLGVDALRVID-GSTFYYSPGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 403 VVD~~~rV~Gv~nL~V~D-aSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
+||..+|+.+.+|+|+++ ++.++..+........+.-|..+|+.|.+..
T Consensus 261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 789999999999999986 4445544333333334555666666666543
No 123
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=48.13 E-value=38 Score=33.74 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=34.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+.+.+++.++.|++|..+++ .+ .|+. .+| ++ .++.||+|+|+. +++|+.
T Consensus 154 ~~~~~g~~~~~~~~V~~i~~~~~-----~~-~v~~--~~~---~i-----~a~~vV~aaG~~-~~~l~~ 205 (380)
T TIGR01377 154 LAEAHGATVRDGTKVVEIEPTEL-----LV-TVKT--TKG---SY-----QANKLVVTAGAW-TSKLLS 205 (380)
T ss_pred HHHHcCCEEECCCeEEEEEecCC-----eE-EEEe--CCC---EE-----EeCEEEEecCcc-hHHHhh
Confidence 34456899999999999976543 23 3443 233 34 368999999985 445554
No 124
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=47.12 E-value=57 Score=34.44 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
+.|++|++++.|++|.-+++ ++++|++.+. +|+..++ .++.||+|.|..-...+|.
T Consensus 400 ~~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 36999999999999864433 6888988753 3444555 4799999999877777664
No 125
>PRK10262 thioredoxin reductase; Provisional
Probab=46.87 E-value=69 Score=31.20 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=41.1
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCC--CceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT--GAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~--g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+..++++++++.|++|.-++. .+++|++.+.. +...++ .++.||+|.|..-...|+
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF 253 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh
Confidence 34567899999999999864432 47888886532 233445 479999999976666654
No 126
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=45.97 E-value=77 Score=33.15 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=25.2
Q ss_pred eeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 012707 409 KVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 409 rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
+...++|||.+.+|++|-.+- | .+++=|..+|+.|+++.
T Consensus 454 ~~t~i~gLyl~G~~~~pG~Gv--~--g~~~sg~~~a~~il~~~ 492 (502)
T TIGR02734 454 RDRKIDNLYLVGAGTHPGAGV--P--GVLGSAKATAKLMLGDL 492 (502)
T ss_pred CCCCCCCEEEeCCCCCCCCCH--H--HHHHHHHHHHHHHHhhc
Confidence 345789999999999884221 2 23344555677777653
No 127
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=45.54 E-value=63 Score=33.15 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=33.7
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+.+.+++|++++.|+.|..+++ ++++|.. +|. ++ .++.||+|.|+
T Consensus 117 ~a~~~Gv~i~~~~~V~~i~~~~g-----~v~~v~~---~g~--~i-----~A~~VI~A~G~ 162 (428)
T PRK10157 117 QAEEAGAQLITGIRVDNLVQRDG-----KVVGVEA---DGD--VI-----EAKTVILADGV 162 (428)
T ss_pred HHHHCCCEEECCCEEEEEEEeCC-----EEEEEEc---CCc--EE-----ECCEEEEEeCC
Confidence 34457899999999999987654 4666542 343 34 37999999997
No 128
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=44.04 E-value=60 Score=37.37 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=45.6
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
+.+.+++|++++.|++|.-+ + ++.+|++...+|...++ .++.|+++.|..-...|+...|
T Consensus 361 L~~~GV~i~~~~~v~~i~g~--~----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg 420 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGG--K----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRG 420 (985)
T ss_pred HHHcCCEEEcCCeEEEEecC--C----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcC
Confidence 34568999999999998532 2 58888886434555555 4799999999998888888776
No 129
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=43.89 E-value=27 Score=26.71 Aligned_cols=33 Identities=24% Similarity=0.502 Sum_probs=28.7
Q ss_pred ccCCceEeecccCCCCCCCChHHHHHHHHHHHH
Q 012707 412 GVDALRVIDGSTFYYSPGTNPQATVMMLGRYMG 444 (458)
Q Consensus 412 Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A 444 (458)
.+.|.+|+|..+.|..|......-++++|.=++
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~G 69 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLG 69 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999887443
No 130
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=43.59 E-value=58 Score=32.97 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
..+|++++.++.|++|..++++ +.|.+.+ ++...++ .++.||.|-|+-.
T Consensus 133 ~~~~v~i~~~~~v~~v~~~~~~------~~v~~~~-~~~~~~i-----~adlvIgADG~~S 181 (415)
T PRK07364 133 SCPNITWLCPAEVVSVEYQQDA------ATVTLEI-EGKQQTL-----QSKLVVAADGARS 181 (415)
T ss_pred cCCCcEEEcCCeeEEEEecCCe------eEEEEcc-CCcceEE-----eeeEEEEeCCCCc
Confidence 4478999999999999776542 2356643 3443455 3799999999744
No 131
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=43.30 E-value=46 Score=35.75 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=34.4
Q ss_pred cccCCCCeeec-----cCCceEee---cccCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 012707 402 KVVDHDYKVLG-----VDALRVID---GSTFYY--SPGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 402 ~VVD~~~rV~G-----v~nL~V~D---aSv~P~--~~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
=.+|.++||.. ++|||.+. ++++-. ...++.....+..+..+++++.+..
T Consensus 513 l~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 572 (578)
T PRK12843 513 LVTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRT 572 (578)
T ss_pred ccCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 36666666665 79999997 345432 1335667778888888888877653
No 132
>PRK12839 hypothetical protein; Provisional
Probab=42.98 E-value=41 Score=36.09 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=34.9
Q ss_pred ccCCCCeeec-----cCCceEee---cccCCC--CCCCChHHHHHHHHHHHHHHHHHH
Q 012707 403 VVDHDYKVLG-----VDALRVID---GSTFYY--SPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 403 VVD~~~rV~G-----v~nL~V~D---aSv~P~--~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
.+|.++||-+ ++|||.+. +|++-. ..+++.....+..+..+++++.+.
T Consensus 510 ~in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 510 VADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred cCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 5666666665 79999998 455542 235778888899999988887653
No 133
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=42.97 E-value=22 Score=36.68 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+||+|+-++.+ .|++.+...+..++.||...+ |. .| .++-|||..|+|-+.+|-
T Consensus 136 st~nL~ire~~V~-dliv~~~~~~~~~~~gV~l~d--gt--~v-----~a~~VilTTGTFL~~~I~ 191 (679)
T KOG2311|consen 136 STPNLEIREGAVA-DLIVEDPDDGHCVVSGVVLVD--GT--VV-----YAESVILTTGTFLRGQIN 191 (679)
T ss_pred cCCcchhhhhhhh-heeeccCCCCceEEEEEEEec--Cc--Ee-----ccceEEEeeccceeeEEe
Confidence 4689999999755 555543332345799999864 54 24 379999999998777664
No 134
>PRK07233 hypothetical protein; Provisional
Probab=42.56 E-value=38 Score=34.40 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=36.1
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
....+.+|++++.|++|..+++ ++++|.. +++ ++ .++.||+|+..-..++||
T Consensus 208 l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~--~~-----~ad~vI~a~p~~~~~~ll 259 (434)
T PRK07233 208 IEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGE--EE-----DFDAVISTAPPPILARLV 259 (434)
T ss_pred HHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCc--eE-----ECCEEEECCCHHHHHhhc
Confidence 3345789999999999988765 4666652 343 34 378999999875555443
No 135
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=41.55 E-value=46 Score=34.66 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe---C-------CCceeEEEeccCCCceEEEcCCCcCc-hHHHHhh
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD---A-------TGAKHRAYLKNGPKNEIIVSAGALGS-PQLLMLS 177 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~---~-------~g~~~~v~~~~~~~~eVILsAGai~S-P~LLl~S 177 (458)
...++++++++.+++|.-++ + ++++|++.. . .|+..++ .++.||+|.|..-. ..||...
T Consensus 340 ~~~GV~i~~~~~~~~i~~~~-g----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~~~ 409 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGEN-G----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLAQF 409 (471)
T ss_pred HHcCCeEEeccCceEEEccC-C----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcccc
Confidence 34689999999999996433 3 799998742 1 2344555 47999999995443 4465544
Q ss_pred c
Q 012707 178 G 178 (458)
Q Consensus 178 G 178 (458)
|
T Consensus 410 g 410 (471)
T PRK12810 410 G 410 (471)
T ss_pred C
Confidence 3
No 136
>PRK12831 putative oxidoreductase; Provisional
Probab=41.47 E-value=70 Score=33.27 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=39.7
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CC---------CceeEEEeccCCCceEEEcCCCcCchH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------AT---------GAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
...++++++++.+.+|.-++++ +++||++.. .+ |..+++ .++.||+|.|..-...
T Consensus 329 ~~eGV~i~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i-----~~D~Vi~AiG~~p~~~ 399 (464)
T PRK12831 329 KEEGVIFDLLTNPVEILGDENG----WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVL-----EVDTVIMSLGTSPNPL 399 (464)
T ss_pred HHcCCEEEecccceEEEecCCC----eEEEEEEEEEEecCcCCCCCccceecCCceEEE-----ECCEEEECCCCCCChh
Confidence 3469999999999999765554 799998751 12 233345 5799999999654443
Q ss_pred HH
Q 012707 173 LL 174 (458)
Q Consensus 173 LL 174 (458)
+|
T Consensus 400 ~~ 401 (464)
T PRK12831 400 IS 401 (464)
T ss_pred hh
Confidence 33
No 137
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=39.35 E-value=49 Score=35.38 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=36.0
Q ss_pred CCc-ccCCCCeeec-----cCCceEeec---ccCCC-CC-CCChHHHHHHHHHHHHHHHHHH
Q 012707 400 VGK-VVDHDYKVLG-----VDALRVIDG---STFYY-SP-GTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 400 MG~-VVD~~~rV~G-----v~nL~V~Da---Sv~P~-~~-~~np~~ti~alA~r~A~~i~~~ 450 (458)
+|| .+|.++||-. ++|||.+.. +++-. -+ .++.....+-.+..+++++.+.
T Consensus 488 ~GGl~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 488 SGGLLTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCccCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 443 6777777766 799999973 45532 23 3677888888899888887664
No 138
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=38.86 E-value=85 Score=33.26 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=39.2
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
+.+|++|+.++.|+.|..++++ + -|.+.+.+|+..++. ++.||-|-|+-.+-|=+
T Consensus 125 ~~~gv~v~~g~~v~~i~~~~~~-----v-~v~~~~~~G~~~~i~-----ad~vVgADG~~S~vR~~ 179 (538)
T PRK06183 125 RFPHVRVRFGHEVTALTQDDDG-----V-TVTLTDADGQRETVR-----ARYVVGCDGANSFVRRT 179 (538)
T ss_pred hCCCcEEEcCCEEEEEEEcCCe-----E-EEEEEcCCCCEEEEE-----EEEEEecCCCchhHHHH
Confidence 3479999999999999877652 3 355654467656664 79999999985555433
No 139
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=38.52 E-value=74 Score=32.93 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=39.9
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CCC---------ceeEEEeccCCCceEEEcCCCcCch
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
+...++++++++.+.+|.-++++ ++++|++.. .+| ...++ .++.||+|.|-.-..
T Consensus 319 l~~~GV~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i-----~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 319 AEEEGVKFHFLCQPVEIIGDEEG----NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKL-----EADAVIVAIGNGSNP 389 (449)
T ss_pred HHhCCCEEEeccCcEEEEEcCCC----eEEEEEEEEEEecCcCCCCCeeeeecCCceEEE-----ECCEEEECCCCCCCc
Confidence 34569999999999999765444 788998751 123 22344 479999999964444
Q ss_pred HHHH
Q 012707 172 QLLM 175 (458)
Q Consensus 172 ~LLl 175 (458)
.+|.
T Consensus 390 ~~l~ 393 (449)
T TIGR01316 390 IMAE 393 (449)
T ss_pred hhhh
Confidence 3333
No 140
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=38.37 E-value=39 Score=34.41 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=28.5
Q ss_pred cccCCCCeeeccCCceEe-ecccCCCCCCCChHHHHHHHHHHHHH
Q 012707 402 KVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGV 445 (458)
Q Consensus 402 ~VVD~~~rV~Gv~nL~V~-DaSv~P~~~~~np~~ti~alA~r~A~ 445 (458)
=+||+++++-|.+|+|++ |.+-++.. +|..++.-+|++.++
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~---~p~P~tAQ~A~Qqg~ 321 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDP---RPVPPTAQAAHQQGE 321 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCC---CCCCChhHHHHHHHH
Confidence 399999999999999998 55656654 444444444444443
No 141
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=37.49 E-value=58 Score=33.75 Aligned_cols=54 Identities=17% Similarity=0.046 Sum_probs=37.0
Q ss_pred cccCCc-ccCCCCeeec-----cCCceEee---cc-cCCC-CCCCChHHHHHHHHHHHHHHHHHH
Q 012707 397 GCQVGK-VVDHDYKVLG-----VDALRVID---GS-TFYY-SPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 397 TcrMG~-VVD~~~rV~G-----v~nL~V~D---aS-v~P~-~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
.+-||| .+|.++||.. ++|||.+. ++ ++-. -+++|-.+..+..+..+++++.+.
T Consensus 396 ~~t~GGl~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 396 TFTYLGLKVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred eeecccEEECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 344664 6888888864 89999998 33 6542 334566677777888888777654
No 142
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=36.90 E-value=91 Score=29.42 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=33.0
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
....+.+.+++.++.|++|..++++ + .|.+. ++ ..++ .++.||+|.|.-
T Consensus 99 ~~~~~~gv~~~~~~~v~~~~~~~~~-----~-~~~~~--~~-~~~~-----~a~~vv~a~G~~ 147 (295)
T TIGR02032 99 ERAQEAGAELRLGTTVLDVEIHDDR-----V-VVIVR--GG-EGTV-----TAKIVIGADGSR 147 (295)
T ss_pred HHHHHcCCEEEeCcEEeeEEEeCCE-----E-EEEEc--Cc-cEEE-----EeCEEEECCCcc
Confidence 3344568999999999999887652 2 23332 22 2334 379999999964
No 143
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=36.74 E-value=57 Score=35.17 Aligned_cols=51 Identities=24% Similarity=0.371 Sum_probs=37.5
Q ss_pred cCCcc-cCCCCeee--------ccCCceEeecccCCC-----CCCCChHHHHHHHHHHHHHHHHH
Q 012707 399 QVGKV-VDHDYKVL--------GVDALRVIDGSTFYY-----SPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 399 rMG~V-VD~~~rV~--------Gv~nL~V~DaSv~P~-----~~~~np~~ti~alA~r~A~~i~~ 449 (458)
-|||| ||.++||. .++|||.++-..--. -.++|..+..+..+.++++.+.+
T Consensus 360 t~GGi~vd~~g~~~~~~~~~g~~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 360 QMGGIPTNIHGQVVGTSRDHKEPVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred eCCCeeECCCCcEeccccCCCCeeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 46776 89999995 389999988643211 13457888888899998888764
No 144
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=36.32 E-value=70 Score=33.30 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=40.5
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CC---------CceeEEEeccCCCceEEEcCCCcCc-hH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------AT---------GAKHRAYLKNGPKNEIIVSAGALGS-PQ 172 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~~~~~~~~eVILsAGai~S-P~ 172 (458)
..++++++++.+.+|..++++ ++++|++.. .+ |+.+++ .++.||+|.|..-. ..
T Consensus 332 ~~GV~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i-----~~D~Vi~a~G~~p~~~~ 402 (467)
T TIGR01318 332 EEGVEFLFNVQPVYIECDEDG----RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVL-----PADVVIMAFGFQPHAMP 402 (467)
T ss_pred hcCCEEEecCCcEEEEECCCC----eEEEEEEEEEEecccCCCCCccceecCCceEEE-----ECCEEEECCcCCCCccc
Confidence 468999999999999776544 788988742 12 233445 47999999996543 33
Q ss_pred HHHhhc
Q 012707 173 LLMLSG 178 (458)
Q Consensus 173 LLl~SG 178 (458)
+|..+|
T Consensus 403 ~~~~~g 408 (467)
T TIGR01318 403 WLAGHG 408 (467)
T ss_pred cccccC
Confidence 444343
No 145
>COG4895 Uncharacterized conserved protein [Function unknown]
Probab=36.22 E-value=24 Score=24.59 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.5
Q ss_pred hHHHHhhc--CCCcceeecCCccCCC
Q 012707 171 PQLLMLSG--AHNITVVLDQPLVGQG 194 (458)
Q Consensus 171 P~LLl~SG--~~gI~~~~d~p~VG~n 194 (458)
.+||-+|- ++||.+.....+|||-
T Consensus 34 k~iLT~S~~HPHGIKVrL~dGqvGRv 59 (63)
T COG4895 34 KAILTRSPSHPHGIKVRLTDGQVGRV 59 (63)
T ss_pred HHHHhCCCCCCCceEEEeecCcccce
Confidence 46899998 9999999888889973
No 146
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=35.76 E-value=58 Score=34.89 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=33.2
Q ss_pred ccCCCCeeec-----cCCceEee---cccCC-CCC-CCChHHHHHHHHHHHHHHHH
Q 012707 403 VVDHDYKVLG-----VDALRVID---GSTFY-YSP-GTNPQATVMMLGRYMGVRIL 448 (458)
Q Consensus 403 VVD~~~rV~G-----v~nL~V~D---aSv~P-~~~-~~np~~ti~alA~r~A~~i~ 448 (458)
.+|.++||.+ ++|||.+. ++++- .-+ +++.....+..+..+++++.
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa 562 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAA 562 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHh
Confidence 5666666665 69999997 55554 233 37788888888998888765
No 147
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=35.62 E-value=69 Score=34.90 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCcc-cCCCCeee---------ccCCceEeecccCCC-C----CCCChHHHHHHHHHHHHHHHHH
Q 012707 400 VGKV-VDHDYKVL---------GVDALRVIDGSTFYY-S----PGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 400 MG~V-VD~~~rV~---------Gv~nL~V~DaSv~P~-~----~~~np~~ti~alA~r~A~~i~~ 449 (458)
|||| ||.+++|- .++|||.+.-..--. . .++|..+..+..+.++++.+.+
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 7775 99999983 499999998643211 1 3457888999999999988765
No 148
>PRK10015 oxidoreductase; Provisional
Probab=35.52 E-value=83 Score=32.33 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=33.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+...+.+++.++.|+.|..+++ ++++|.. ++ .++ .++.||+|.|+
T Consensus 117 ~a~~~Gv~i~~~~~V~~i~~~~~-----~v~~v~~---~~--~~i-----~A~~VI~AdG~ 162 (429)
T PRK10015 117 QAEQAGAQFIPGVRVDALVREGN-----KVTGVQA---GD--DIL-----EANVVILADGV 162 (429)
T ss_pred HHHHcCCEEECCcEEEEEEEeCC-----EEEEEEe---CC--eEE-----ECCEEEEccCc
Confidence 33456899999999999987654 5777753 22 234 37999999996
No 149
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=35.36 E-value=73 Score=33.16 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=39.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
...+.+++|++++.|++|.-+++ . ..|++.+.+|+..++ .++.||+|.|..-....|
T Consensus 233 ~l~~~gi~i~~~~~v~~i~~~~~-----~-v~v~~~~~~g~~~~i-----~~D~vl~a~G~~p~~~~l 289 (475)
T PRK06327 233 AFTKQGLDIHLGVKIGEIKTGGK-----G-VSVAYTDADGEAQTL-----EVDKLIVSIGRVPNTDGL 289 (475)
T ss_pred HHHHcCcEEEeCcEEEEEEEcCC-----E-EEEEEEeCCCceeEE-----EcCEEEEccCCccCCCCC
Confidence 34457899999999999975543 2 245555434554455 479999999977665543
No 150
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=35.10 E-value=82 Score=32.68 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=39.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHH--HHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQL--LMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~L--Ll~SG 178 (458)
...+.+++|++++.|++|.-++. ...|.+...+|+..++ .++.||+|.|..-...+ |..+|
T Consensus 222 ~l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~l~l~~~g 284 (466)
T PRK07818 222 QYKKLGVKILTGTKVESIDDNGS------KVTVTVSKKDGKAQEL-----EADKVLQAIGFAPRVEGYGLEKTG 284 (466)
T ss_pred HHHHCCCEEEECCEEEEEEEeCC------eEEEEEEecCCCeEEE-----EeCEEEECcCcccCCCCCCchhcC
Confidence 34456999999999999964332 2234444235654455 47999999997665554 34444
No 151
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=34.85 E-value=1e+02 Score=33.69 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.0
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+.+ +++++.++.|++|..+++ .++ |+ ..+|. .+ .++.||+|+|+ .+++|+
T Consensus 416 ~~a~~-Gv~i~~~~~V~~i~~~~~-----~~~-v~--t~~g~--~~-----~ad~VV~A~G~-~s~~l~ 467 (662)
T PRK01747 416 ALAGQ-QLTIHFGHEVARLEREDD-----GWQ-LD--FAGGT--LA-----SAPVVVLANGH-DAARFA 467 (662)
T ss_pred Hhccc-CcEEEeCCEeeEEEEeCC-----EEE-EE--ECCCc--EE-----ECCEEEECCCC-Cccccc
Confidence 34455 899999999999987654 233 43 22343 22 37899999997 344443
No 152
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=34.81 E-value=69 Score=33.43 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=23.2
Q ss_pred eccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 012707 411 LGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 411 ~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
-.++|||.|.+|++|-. +. | .+++=|..+|+.|++
T Consensus 456 t~i~gLyl~G~~~~pG~-Gv-~--g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 456 TPVKGLWLCGDSIHPGE-GT-A--GVSYSALMVVRQILA 490 (492)
T ss_pred CCCCCeEEecCccCCCC-cH-H--HHHHHHHHHHHHHhh
Confidence 37999999999999842 22 1 233445666666664
No 153
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=34.64 E-value=81 Score=32.54 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=38.4
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH--HHHhhc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ--LLMLSG 178 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~--LLl~SG 178 (458)
..+.++++++++.|++|..+++ .++ |+. .+|+..++ ..+.||+|.|..-... +|..+|
T Consensus 221 l~~~gi~i~~~~~v~~i~~~~~-----~v~-v~~--~~g~~~~i-----~~D~vi~a~G~~p~~~~l~~~~~g 280 (461)
T TIGR01350 221 LKKKGVKILTNTKVTAVEKNDD-----QVV-YEN--KGGETETL-----TGEKVLVAVGRKPNTEGLGLENLG 280 (461)
T ss_pred HHHcCCEEEeCCEEEEEEEeCC-----EEE-EEE--eCCcEEEE-----EeCEEEEecCCcccCCCCCcHhhC
Confidence 3456899999999999976544 232 333 24543344 4799999999776666 344444
No 154
>PRK11445 putative oxidoreductase; Provisional
Probab=34.62 E-value=1.2e+02 Score=29.94 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
..+++++.++.|+.|..+++ ...|.+.. +|+..++ .++.||.|.|+-...
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~------~~~v~~~~-~g~~~~i-----~a~~vV~AdG~~S~v 159 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDD------GYHVIFRA-DGWEQHI-----TARYLVGADGANSMV 159 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCC------EEEEEEec-CCcEEEE-----EeCEEEECCCCCcHH
Confidence 46899999999999986654 23355543 5654455 379999999975443
No 155
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.55 E-value=94 Score=31.60 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=41.0
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC-CCceeEEEeccCCCceEEEcCCCc-CchHHHH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA-TGAKHRAYLKNGPKNEIIVSAGAL-GSPQLLM 175 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~-~g~~~~v~~~~~~~~eVILsAGai-~SP~LLl 175 (458)
.+++.+++++.|.++.-+++| + .-+.+... .|+..++. .+.||||.|-= ..|.+|.
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g----~-~~l~~~~~~~~~~~t~~-----~D~vIlATGY~~~~P~fL~ 347 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDG----R-YRLTLRHHETGELETVE-----TDAVILATGYRRAVPSFLE 347 (436)
T ss_pred CCCeeeccccceeeeecCCCc----e-EEEEEeeccCCCceEEE-----eeEEEEecccccCCchhhh
Confidence 589999999999999877764 3 44555442 56666663 69999999965 5665554
No 156
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=34.02 E-value=82 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=35.4
Q ss_pred ccCCCCeeec-----cCCceEee---cccCCC-C-CCCChHHHHHHHHHHHHHHHHHHHHh
Q 012707 403 VVDHDYKVLG-----VDALRVID---GSTFYY-S-PGTNPQATVMMLGRYMGVRILSERLA 453 (458)
Q Consensus 403 VVD~~~rV~G-----v~nL~V~D---aSv~P~-~-~~~np~~ti~alA~r~A~~i~~~~~~ 453 (458)
.+|.++||-. ++|||.+. ++++-. - ..++.....+..+..+++++.++..+
T Consensus 509 ~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~~ 569 (574)
T PRK12842 509 RTDVTGEVLDADGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAGG 569 (574)
T ss_pred CCCCCceEECCCCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhcc
Confidence 4555555554 68999998 445532 1 23778888999999999988776543
No 157
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=33.97 E-value=65 Score=34.62 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=32.3
Q ss_pred ccCCCCeeec-----cCCceEeec---ccCC--CCCCCChHHHHHHHHHHHHHHHHH
Q 012707 403 VVDHDYKVLG-----VDALRVIDG---STFY--YSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 403 VVD~~~rV~G-----v~nL~V~Da---Sv~P--~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
.+|.++||.+ ++|||.+.. +++- ...+++.....+..+..+++++.+
T Consensus 513 ~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~ 569 (581)
T PRK06134 513 KTDADARVLDQAGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAG 569 (581)
T ss_pred cCCCCCceECCCCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhh
Confidence 4555555555 789999983 4552 123567778888888888888765
No 158
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=33.37 E-value=1.4e+02 Score=29.96 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.9
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.....++++.+++.|++|.-+++ ...|++. +|+ ++ .++.||+|.|.--.+.|+..+|
T Consensus 192 ~l~~~gV~i~~~~~v~~i~~~~~------~~~v~~~--~g~--~i-----~~D~vI~a~G~~p~~~l~~~~g 248 (377)
T PRK04965 192 RLTEMGVHLLLKSQLQGLEKTDS------GIRATLD--SGR--SI-----EVDAVIAAAGLRPNTALARRAG 248 (377)
T ss_pred HHHhCCCEEEECCeEEEEEccCC------EEEEEEc--CCc--EE-----ECCEEEECcCCCcchHHHHHCC
Confidence 34456899999999999875433 2335543 454 34 3799999999887778888777
No 159
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=33.01 E-value=52 Score=31.61 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=38.4
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHh
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLML 176 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~ 176 (458)
.+|+|+++++|++|-..++ ---+... +|..+. ..+.|||+.=+=+++.||--
T Consensus 116 tdL~V~~~~rVt~v~~~~~------~W~l~~~--~g~~~~------~~d~vvla~PAPQ~~~LLt~ 167 (331)
T COG3380 116 TDLTVVLETRVTEVARTDN------DWTLHTD--DGTRHT------QFDDVVLAIPAPQTATLLTT 167 (331)
T ss_pred ccchhhhhhhhhhheecCC------eeEEEec--CCCccc------ccceEEEecCCCcchhhcCc
Confidence 5999999999999988744 3334432 444433 37999999999899988853
No 160
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=32.60 E-value=1e+02 Score=30.56 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCceEeecccCCCCCCCChHHHHHHHHHHHHHHHH
Q 012707 414 DALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448 (458)
Q Consensus 414 ~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~ 448 (458)
+||++|...+.|...+ .+--++.=|+++|+.||
T Consensus 418 ~~l~~aG~~~~~~~~~--~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYPG--GIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSSTT--SHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCCC--cHHHHHHHHHHHHHHhC
Confidence 8999999999997653 33445567888888775
No 161
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=32.55 E-value=1.3e+02 Score=31.17 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=46.4
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc---------CC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG---------AH 180 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG---------~~ 180 (458)
..+.+++.+++|+.|++.++ .+.+|... +|.. + .+++||||-|-=..--+=++.- +.
T Consensus 185 ~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--i-----~~~~vvlA~Grsg~dw~~~l~~K~Gv~~~~~p~ 250 (486)
T COG2509 185 SLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--I-----EADYVVLAPGRSGRDWFEMLHKKLGVKMRAKPF 250 (486)
T ss_pred hcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--E-----ecCEEEEccCcchHHHHHHHHHhcCcccccCCe
Confidence 34699999999999999876 36777664 4543 3 4799999999432222222221 44
Q ss_pred CcceeecCCccCCCCCCC
Q 012707 181 NITVVLDQPLVGQGMSDN 198 (458)
Q Consensus 181 gI~~~~d~p~VG~nl~dH 198 (458)
.|++.++.| +.+||+
T Consensus 251 dIGVRvE~p---~~vmd~ 265 (486)
T COG2509 251 DIGVRVEHP---QSVMDP 265 (486)
T ss_pred eEEEEEecc---hHhhCc
Confidence 555666655 455665
No 162
>PRK08275 putative oxidoreductase; Provisional
Probab=32.20 E-value=62 Score=34.51 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred cccccccccCCc-ccCCCCeeeccCCceEeecccCCCCCCCChHHHHHHHHHHHHHHHH
Q 012707 391 IWHYHGGCQVGK-VVDHDYKVLGVDALRVIDGSTFYYSPGTNPQATVMMLGRYMGVRIL 448 (458)
Q Consensus 391 ~~H~~GTcrMG~-VVD~~~rV~Gv~nL~V~DaSv~P~~~~~np~~ti~alA~r~A~~i~ 448 (458)
..|.+|+-.||| .||.++|. .++|||.|.-... .+.|-.+..+.-+.++++.+.
T Consensus 347 ~~~~~g~~~~Ggi~~d~~~~t-~i~gl~a~Ge~~~---~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 347 EIGFCSGHSASGVWVNEKAET-TVPGLYAAGDMAS---VPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CceeecccccCcEEECCCCcc-CCCCEEECcccCC---chhHHHHHHHHHHHHHHHHHH
Confidence 456777778987 78999996 7999999866432 124555656666777666554
No 163
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=32.16 E-value=77 Score=33.99 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCcc-cCCCCeee---------ccCCceEeecccC--CC---CCCCChHHHHHHHHHHHHHHHHH
Q 012707 400 VGKV-VDHDYKVL---------GVDALRVIDGSTF--YY---SPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 400 MG~V-VD~~~rV~---------Gv~nL~V~DaSv~--P~---~~~~np~~ti~alA~r~A~~i~~ 449 (458)
|||+ ||.+++|- .++|||-|.--.- +. -.++|..+..+..+.++++.+.+
T Consensus 339 ~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 339 MGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 6665 88888883 4999999865321 11 23578889999999999887754
No 164
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=31.92 E-value=97 Score=33.36 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=34.6
Q ss_pred cCCc-ccCCCCeeec-----cCCceEee---cccCCC-C-CCCChHHHHHHHHHHHHHHHHHHH
Q 012707 399 QVGK-VVDHDYKVLG-----VDALRVID---GSTFYY-S-PGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 399 rMG~-VVD~~~rV~G-----v~nL~V~D---aSv~P~-~-~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
-||| ++|.++||-+ ++|||.+. ++++-. - .+++.....+..+..+++++.+..
T Consensus 507 T~GGl~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~ 570 (584)
T PRK12835 507 TSGGLRTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVV 570 (584)
T ss_pred cCcCccCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhh
Confidence 3443 5566666655 58999998 556642 1 235667777888888888876643
No 165
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=31.76 E-value=78 Score=34.06 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=36.3
Q ss_pred cCCcc-cCCCCee-----eccCCceEeecccCCC-----CCCCChHHHHHHHHHHHHHHHHH
Q 012707 399 QVGKV-VDHDYKV-----LGVDALRVIDGSTFYY-----SPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 399 rMG~V-VD~~~rV-----~Gv~nL~V~DaSv~P~-----~~~~np~~ti~alA~r~A~~i~~ 449 (458)
-|||| +|.+++| -.++|||.+.--.--. -.++|..+..+..+.++++.+.+
T Consensus 355 t~GGi~id~~~~v~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 416 (583)
T PRK08205 355 AMGGIPTTVDGEVLRDNTTVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAAE 416 (583)
T ss_pred ECCCeeECCCceEecCCCCCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHHH
Confidence 47776 8999998 4699999987643211 12457778788888888877654
No 166
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=31.53 E-value=1e+02 Score=31.37 Aligned_cols=50 Identities=22% Similarity=0.369 Sum_probs=34.9
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
.+.+.+++|++++.|++|..+++ ...|+. +++ ++ .++.||+|+|....|+
T Consensus 114 ~l~~~gv~i~~~~~V~~i~~~~~------~~~v~~---~~~--~i-----~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 114 ELKELGVEILTNSKVKSIKKDDN------GFGVET---SGG--EY-----EADKVILATGGLSYPQ 163 (400)
T ss_pred HHHHCCCEEEeCCEEEEEEecCC------eEEEEE---CCc--EE-----EcCEEEECCCCcccCC
Confidence 44556899999999999965432 334544 233 23 3799999999987664
No 167
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=30.44 E-value=1.2e+02 Score=31.34 Aligned_cols=47 Identities=26% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
...+-++++++.|++|.+++++ +++||... +|+. + .++.||....-+
T Consensus 243 a~~Gg~~~L~~~V~~I~~~~~g----~~~~V~~~--~Ge~--i-----~a~~VV~~~s~~ 289 (443)
T PTZ00363 243 AIYGGTYMLNTPVDEVVFDENG----KVCGVKSE--GGEV--A-----KCKLVICDPSYF 289 (443)
T ss_pred HHcCcEEEcCCeEEEEEEcCCC----eEEEEEEC--CCcE--E-----ECCEEEECcccc
Confidence 3467899999999999998654 68888774 4643 3 368888866654
No 168
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.44 E-value=74 Score=34.28 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred cCCcc-cCCCCeee---------ccCCceEeecccC--C---CCCCCChHHHHHHHHHHHHHHHHH
Q 012707 399 QVGKV-VDHDYKVL---------GVDALRVIDGSTF--Y---YSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 399 rMG~V-VD~~~rV~---------Gv~nL~V~DaSv~--P---~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
-|||| ||.+++|- -++|||.|.--.- + .-.++|..+-.+..+.++++.+.+
T Consensus 356 t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 421 (588)
T PRK08958 356 MMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQE 421 (588)
T ss_pred eCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 36665 88888883 4999999876322 1 123567778888889888887754
No 169
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=30.29 E-value=1.2e+02 Score=30.21 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=30.0
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+|++++.++.|+.|..+++ .+ .|.+ .+|. ++ .++.||.|.|+
T Consensus 119 ~gv~~~~~~~v~~i~~~~~-----~~-~v~~--~~g~--~~-----~ad~vV~AdG~ 160 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQD-----YV-RVTL--DNGQ--QL-----RAKLLIAADGA 160 (382)
T ss_pred CCcEEEcCCeEEEEEEcCC-----eE-EEEE--CCCC--EE-----EeeEEEEecCC
Confidence 6999999999999986654 22 3443 2454 34 37999999995
No 170
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=29.79 E-value=1.1e+02 Score=31.09 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=35.3
Q ss_pred hHh-hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 104 LLE-YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 104 ~l~-~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+|. .+...+.+++++++|+.+..++++ .++++.. +. .++ .+|.||.|-|+
T Consensus 100 ~La~~A~~aGae~~~~~~~~~~~~~~~~----~~~~~~~----~~-~e~-----~a~~vI~AdG~ 150 (396)
T COG0644 100 WLAERAEEAGAELYPGTRVTGVIREDDG----VVVGVRA----GD-DEV-----RAKVVIDADGV 150 (396)
T ss_pred HHHHHHHHcCCEEEeceEEEEEEEeCCc----EEEEEEc----CC-EEE-----EcCEEEECCCc
Confidence 443 445679999999999999998874 3444332 21 455 37999999985
No 171
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=29.55 E-value=1.3e+02 Score=30.10 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=32.0
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
+...+++++.++.|+.|..+++ .++ |++ .+|+ ++ .++.||.|.|.-
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~-----~v~-v~~--~~g~--~~-----~a~~vV~AdG~~ 168 (392)
T PRK08773 123 LHAAGVQLHCPARVVALEQDAD-----RVR-LRL--DDGR--RL-----EAALAIAADGAA 168 (392)
T ss_pred HHhCCCEEEcCCeEEEEEecCC-----eEE-EEE--CCCC--EE-----EeCEEEEecCCC
Confidence 3456899999999999986654 232 444 2454 34 379999999973
No 172
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=29.40 E-value=1.6e+02 Score=28.45 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=34.2
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+.+.+|..++.|+.+..+.+ .++.+.....+|+.+++. ++.||-|-|+
T Consensus 122 ~~~gv~i~~~~~v~~~~~d~~-----~~~~~~~~~~~g~~~~i~-----adlvVgADG~ 170 (356)
T PF01494_consen 122 EERGVDIRFGTRVVSIEQDDD-----GVTVVVRDGEDGEEETIE-----ADLVVGADGA 170 (356)
T ss_dssp HHHTEEEEESEEEEEEEEETT-----EEEEEEEETCTCEEEEEE-----ESEEEE-SGT
T ss_pred hhhhhhheeeeeccccccccc-----ccccccccccCCceeEEE-----EeeeecccCc
Confidence 334599999999999988876 344443333356666774 7888888886
No 173
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=29.35 E-value=99 Score=31.98 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=38.0
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeC---------------CCceeEEEeccCCCceEEEcCCCcCchHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDA---------------TGAKHRAYLKNGPKNEIIVSAGALGSPQL 173 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~---------------~g~~~~v~~~~~~~~eVILsAGai~SP~L 173 (458)
...++++++++.|.+|.-+++ ..+||++... +|...++ .++.||+|.|..-...|
T Consensus 322 ~~~GV~i~~~~~v~~i~~~~~-----~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i-----~~D~vi~a~G~~p~~~l 391 (457)
T PRK11749 322 KEEGVEFEWLAAPVEILGDEG-----RVTGVEFVRMELGEPDASGRRRVPIEGSEFTL-----PADLVIKAIGQTPNPLI 391 (457)
T ss_pred HHCCCEEEecCCcEEEEecCC-----ceEEEEEEEEEecCcCCCCCcccCCCCceEEE-----ECCEEEECccCCCCchh
Confidence 456899999999999875443 3577876421 2333445 47999999996555444
Q ss_pred H
Q 012707 174 L 174 (458)
Q Consensus 174 L 174 (458)
+
T Consensus 392 ~ 392 (457)
T PRK11749 392 L 392 (457)
T ss_pred h
Confidence 4
No 174
>PRK08244 hypothetical protein; Provisional
Probab=29.16 E-value=1.4e+02 Score=31.18 Aligned_cols=50 Identities=22% Similarity=0.184 Sum_probs=34.5
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+...+.+|+.++.|++|..+++ .+ .|.+.+.+| ..++ .++.||.|.|+-.
T Consensus 110 ~~~~gv~v~~~~~v~~i~~~~~-----~v-~v~~~~~~g-~~~i-----~a~~vVgADG~~S 159 (493)
T PRK08244 110 ARSLGVEIFRGAEVLAVRQDGD-----GV-EVVVRGPDG-LRTL-----TSSYVVGADGAGS 159 (493)
T ss_pred HHHcCCeEEeCCEEEEEEEcCC-----eE-EEEEEeCCc-cEEE-----EeCEEEECCCCCh
Confidence 3445899999999999977655 23 355554345 3445 3799999999843
No 175
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=29.08 E-value=99 Score=31.81 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=32.6
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCC-CceeEEEeccCCCceEEEcCCCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT-GAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~-g~~~~v~~~~~~~~eVILsAGai 168 (458)
.+.|++++.++.|++|..+++ .|.+.+.+ ++..++ ..+.+|||.|+-
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~--------~v~~~~~~~~~~~~~-----~yd~lviAtGs~ 116 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQ--------TVTVLNRKTNEQFEE-----SYDKLILSPGAS 116 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCC--------EEEEEECCCCcEEee-----ecCEEEECCCCC
Confidence 457999999999999976543 25554422 333334 369999999974
No 176
>PRK06847 hypothetical protein; Provisional
Probab=29.03 E-value=1.5e+02 Score=29.30 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=35.2
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
+.+.+++|+.++.|++|..+++ ...|.+. +|++ + .++.||.|.|+-...+-+
T Consensus 117 ~~~~gv~v~~~~~v~~i~~~~~------~~~v~~~--~g~~--~-----~ad~vI~AdG~~s~~r~~ 168 (375)
T PRK06847 117 ARAAGADVRLGTTVTAIEQDDD------GVTVTFS--DGTT--G-----RYDLVVGADGLYSKVRSL 168 (375)
T ss_pred HHHhCCEEEeCCEEEEEEEcCC------EEEEEEc--CCCE--E-----EcCEEEECcCCCcchhhH
Confidence 3446899999999999976554 2334443 4543 3 369999999986555433
No 177
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=28.99 E-value=1.8e+02 Score=25.04 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=25.8
Q ss_pred CCCeEEE-cccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 110 PSGLTLL-LHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 110 r~nl~v~-t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+.+++|. ...+|+.|...+++ ..+...+|... .++.||||.|.
T Consensus 112 ~~~i~v~~~~~~V~~i~~~~~~--------~~v~~~~g~~~-------~~d~VvLa~Gh 155 (156)
T PF13454_consen 112 PAGITVRHVRAEVVDIRRDDDG--------YRVVTADGQSI-------RADAVVLATGH 155 (156)
T ss_pred cCCcEEEEEeeEEEEEEEcCCc--------EEEEECCCCEE-------EeCEEEECCCC
Confidence 3454433 35588888876652 22233456543 26999999983
No 178
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=28.99 E-value=1.1e+02 Score=31.77 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=36.8
Q ss_pred CCCeeecHHHh----HhhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 94 QNGQRHTAADL----LEYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 94 ~~g~R~s~~~~----l~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.+....+..+ ...+.+.+.+|+.++.|+.|.. ++ ...|+ ..+| ++ .++.||+|+|+.-
T Consensus 175 ~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~------~~~v~--t~~g---~v-----~A~~VV~Atga~s 237 (460)
T TIGR03329 175 PVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQ------PAVVR--TPDG---QV-----TADKVVLALNAWM 237 (460)
T ss_pred CCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CC------ceEEE--eCCc---EE-----ECCEEEEcccccc
Confidence 44444455433 2344557899999999999863 22 23343 2344 24 3799999999853
No 179
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=28.41 E-value=1.3e+02 Score=30.18 Aligned_cols=51 Identities=20% Similarity=0.068 Sum_probs=33.8
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGS 170 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~S 170 (458)
...+.+++.+++|++|.-.+. ....|.+.. +|+..++. ++.||-|-|+=..
T Consensus 114 ~~~gv~v~~~~~v~~i~~~~~-----~~~~V~~~~-~G~~~~i~-----ad~vVgADG~~S~ 164 (392)
T PRK08243 114 LAAGGPIRFEASDVALHDFDS-----DRPYVTYEK-DGEEHRLD-----CDFIAGCDGFHGV 164 (392)
T ss_pred HhCCCeEEEeeeEEEEEecCC-----CceEEEEEc-CCeEEEEE-----eCEEEECCCCCCc
Confidence 446899999999999864222 234577743 57666663 6777777775433
No 180
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=27.99 E-value=77 Score=33.95 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=35.8
Q ss_pred CCcc-cCCCCee--------eccCCceEeecccCCCC-----CCCChHHHHHHHHHHHHHHHHH
Q 012707 400 VGKV-VDHDYKV--------LGVDALRVIDGSTFYYS-----PGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 400 MG~V-VD~~~rV--------~Gv~nL~V~DaSv~P~~-----~~~np~~ti~alA~r~A~~i~~ 449 (458)
|||| +|.+++| -.++|||-|.--.--.. .++|..+-.+..+.++++.+.+
T Consensus 331 ~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~ 394 (565)
T TIGR01816 331 MGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAE 394 (565)
T ss_pred cCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 7776 9999998 35999999976432111 2356777888888888887654
No 181
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=27.47 E-value=1.4e+02 Score=29.58 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-CCCceeEEEeccCCCceEEEcCC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-ATGAKHRAYLKNGPKNEIIVSAG 166 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-~~g~~~~v~~~~~~~~eVILsAG 166 (458)
.+..++|++++.|+.+..++++ -.-+.+.+ ..|+..+. ..+.||||.|
T Consensus 290 g~~~~~l~~~~~v~~~~~~~~~-----~~~l~~~~~~~~~~~~~-----~~D~VilATG 338 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQDGDG-----GVRLTLRHRQTGEEETL-----EVDAVILATG 338 (341)
T ss_dssp T---SEEETTEEEEEEEEES-S-----SEEEEEEETTT--EEEE-----EESEEEE---
T ss_pred CCCCeEEeCCCEEEEEEECCCC-----EEEEEEEECCCCCeEEE-----ecCEEEEcCC
Confidence 4567999999999999988753 23355554 24555555 4799999998
No 182
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=27.30 E-value=1.2e+02 Score=33.19 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=37.3
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CCC---------ceeEEEeccCCCceEEEcCCCcC
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG---------AKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~g---------~~~~v~~~~~~~~eVILsAGai~ 169 (458)
...++++++++.+.+|..++++ +++||++.. .+| ..+++ .++.||+|.|..-
T Consensus 517 ~~~Gv~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i-----~~D~Vi~AiG~~p 584 (654)
T PRK12769 517 REEGANFEFNVQPVALELNEQG----HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVM-----PADAVIMAFGFNP 584 (654)
T ss_pred HHcCCeEEeccCcEEEEECCCC----eEEEEEEEEEEecCcCCCCCCcceeCCCceEEE-----ECCEEEECccCCC
Confidence 3468999999999999876554 799998742 123 33344 5799999999543
No 183
>PRK08163 salicylate hydroxylase; Provisional
Probab=26.90 E-value=1.5e+02 Score=29.59 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=32.2
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
..++++++.++.|+.|..+++ +|.+...+|+ ++ .++.||.|.|+-...
T Consensus 121 ~~~~v~~~~~~~v~~i~~~~~--------~v~v~~~~g~--~~-----~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 121 DHPLVEFRTSTHVVGIEQDGD--------GVTVFDQQGN--RW-----TGDALIGCDGVKSVV 168 (396)
T ss_pred hcCCcEEEeCCEEEEEecCCC--------ceEEEEcCCC--EE-----ecCEEEECCCcChHH
Confidence 345799999999999986544 2333333454 24 378999999975444
No 184
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=26.49 E-value=1.1e+02 Score=33.31 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=37.4
Q ss_pred cCCcc-cCCCCeee---------ccCCceEeeccc----CC-CCCCCChHHHHHHHHHHHHHHHHHH
Q 012707 399 QVGKV-VDHDYKVL---------GVDALRVIDGST----FY-YSPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 399 rMG~V-VD~~~rV~---------Gv~nL~V~DaSv----~P-~~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
-|||+ ||.++||. .++|||.+.--. .- .-.++|..+..+..+.++++.+.+.
T Consensus 378 t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~~ 444 (617)
T PTZ00139 378 NMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVMEI 444 (617)
T ss_pred ecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 46764 89999984 499999996532 11 1235688888888999988887653
No 185
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=26.30 E-value=1.6e+02 Score=29.24 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=43.2
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe--C----CCc--------eeEEEeccCCCceEEEcCCCcCchH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD--A----TGA--------KHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~--~----~g~--------~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
++.++.+++...++|.+|...++ ++|||.-.. + .|+ .+++ .+..||++.|.|+--+
T Consensus 162 ~~~~~~v~f~~RHrV~~l~~t~g-----rvtGv~GdVLeps~v~RG~~SSR~~~GdFef-----~A~aviv~SGGIGGnh 231 (552)
T COG3573 162 AQRRGRVTFRFRHRVDGLTTTGG-----RVTGVRGDVLEPSDVERGQPSSREVVGDFEF-----SASAVIVASGGIGGNH 231 (552)
T ss_pred HHhCCceEEEeeeeccceEeeCC-----eEeeecccccCCCccccCCCccceeecceEE-----eeeeEEEecCCcCCCH
Confidence 44577899999999999999876 799987421 1 222 1223 3678999999887665
Q ss_pred HHHhhc
Q 012707 173 LLMLSG 178 (458)
Q Consensus 173 LLl~SG 178 (458)
=|.+-.
T Consensus 232 elVRrn 237 (552)
T COG3573 232 ELVRRN 237 (552)
T ss_pred HHHHhc
Confidence 555443
No 186
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.18 E-value=1.3e+02 Score=32.82 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=36.6
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CC---------CceeEEEeccCCCceEEEcCCCcC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------AT---------GAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~---------g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
..++++++++.+.+|..++++ +++||++.. .+ |.++.+ .++.||+|.|...
T Consensus 501 ~eGv~~~~~~~~~~i~~~~~g----~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i-----~aD~Vi~AiG~~p 567 (639)
T PRK12809 501 EEGVEFQFNVQPQYIACDEDG----RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFEL-----PADVLIMAFGFQA 567 (639)
T ss_pred HcCCeEEeccCCEEEEECCCC----eEEEEEEEEEEecCcCCCCCccceecCCceEEE-----ECCEEEECcCCCC
Confidence 468999999999999876554 788987632 12 233444 5799999999543
No 187
>PRK07045 putative monooxygenase; Reviewed
Probab=25.38 E-value=2.2e+02 Score=28.51 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
..+|.+++.+++|+.|..++++ ..+.|.+. +|+ ++ .++.||-|-|+-..-|
T Consensus 118 ~~~gv~i~~~~~v~~i~~~~~~----~~~~v~~~--~g~--~~-----~~~~vIgADG~~S~vR 168 (388)
T PRK07045 118 GLPNVRLRFETSIERIERDADG----TVTSVTLS--DGE--RV-----APTVLVGADGARSMIR 168 (388)
T ss_pred cCCCeeEEeCCEEEEEEECCCC----cEEEEEeC--CCC--EE-----ECCEEEECCCCChHHH
Confidence 4578999999999999887654 45667763 454 34 3677777877644333
No 188
>PLN02676 polyamine oxidase
Probab=25.34 E-value=1.2e+02 Score=31.82 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=28.4
Q ss_pred eEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCC
Q 012707 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAG 166 (458)
Q Consensus 113 l~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAG 166 (458)
-.|++++.|++|..+++ ||.+...+|++ + .++.||++..
T Consensus 245 ~~I~l~~~V~~I~~~~~--------gV~V~~~~G~~--~-----~a~~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKN--------GVTVKTEDGSV--Y-----RAKYVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCC--------cEEEEECCCCE--E-----EeCEEEEccC
Confidence 56999999999988654 35555445643 3 3789999986
No 189
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=25.23 E-value=1.3e+02 Score=31.18 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=35.5
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
.....++++++++.|++|.-+++ ...|++.. ++...++ .++.||+|.|..-...
T Consensus 216 ~l~~~gV~i~~~~~V~~i~~~~~------~~~v~~~~-~~~~~~i-----~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 216 ALAEEGIEVVTSAQVKAVSVRGG------GKIITVEK-PGGQGEV-----EADELLVATGRRPNTD 269 (463)
T ss_pred HHHHcCCEEEcCcEEEEEEEcCC------EEEEEEEe-CCCceEE-----EeCEEEEeECCCcCCC
Confidence 34456899999999999975432 23455543 2333445 4799999999655444
No 190
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.16 E-value=1.6e+02 Score=29.60 Aligned_cols=46 Identities=20% Similarity=0.126 Sum_probs=35.8
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+.+|++++.++.|+.+..+++ .++ |.+.. +|+ ++ .++.||-|=|+
T Consensus 115 ~~~~~v~~~~~~~v~~~~~~~~-----~v~-v~l~~-dG~--~~-----~a~llVgADG~ 160 (387)
T COG0654 115 RALPNVTLRFGAEVEAVEQDGD-----GVT-VTLSF-DGE--TL-----DADLLVGADGA 160 (387)
T ss_pred hhCCCcEEEcCceEEEEEEcCC-----ceE-EEEcC-CCc--EE-----ecCEEEECCCC
Confidence 3468899999999999999876 466 77764 676 44 47888888885
No 191
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=25.11 E-value=2e+02 Score=28.38 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=31.4
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
.+.+|.+|+.++.|++|..+++ .+ .|++ .+|+. + .++.||.|.|+-
T Consensus 117 ~~~~~~~v~~~~~v~~i~~~~~-----~~-~v~~--~~g~~--~-----~~~~vi~adG~~ 162 (385)
T TIGR01988 117 QEYPNVTLLCPARVVELPRHSD-----HV-ELTL--DDGQQ--L-----RARLLVGADGAN 162 (385)
T ss_pred HhCCCcEEecCCeEEEEEecCC-----ee-EEEE--CCCCE--E-----EeeEEEEeCCCC
Confidence 3445699999999999987654 23 2444 35543 3 368999998863
No 192
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.78 E-value=1.9e+02 Score=33.47 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=41.4
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------CCC--------ceeEEEeccCCCceEEEcCCCcCchH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------ATG--------AKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~~g--------~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
+...++++++++.+.+|..++++ +++||++.. .+| +..++ .++.||+|.|-.-.+.
T Consensus 619 a~eeGI~~~~~~~p~~i~~~~~G----~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i-----~~D~Vi~AiG~~p~~~ 689 (1006)
T PRK12775 619 AKEEGIDFFFLHSPVEIYVDAEG----SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDL-----ECDTVIYALGTKANPI 689 (1006)
T ss_pred HHhCCCEEEecCCcEEEEeCCCC----eEEEEEEEEEEecccCCCCCccccCCCceEEE-----EcCEEEECCCcCCChh
Confidence 34579999999999999876554 799998752 112 33345 4799999999765554
Q ss_pred HHH
Q 012707 173 LLM 175 (458)
Q Consensus 173 LLl 175 (458)
++.
T Consensus 690 ~~~ 692 (1006)
T PRK12775 690 ITQ 692 (1006)
T ss_pred hhh
Confidence 443
No 193
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=24.48 E-value=95 Score=31.66 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCC-CceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT-GAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~-g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
.+.+++++.++.|++|..++. .|.+.+.+ ++...+ ..+.||||.|+ +|+.+-
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~--------~v~~~~~~~~~~~~~-----~yd~lIiATG~--~p~~~~ 107 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQ--------TVVVRNNKTNETYEE-----SYDYLILSPGA--SPIVPN 107 (427)
T ss_pred HhcCCeEEecCEEEEEECCCC--------EEEEEECCCCCEEec-----CCCEEEECCCC--CCCCCC
Confidence 456899999999999875443 25554322 222222 36999999997 555443
No 194
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=24.45 E-value=85 Score=32.15 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=29.7
Q ss_pred cCCcccCCCCeeeccCCceEe-ecccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 012707 399 QVGKVVDHDYKVLGVDALRVI-DGSTFYYSPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 399 rMG~VVD~~~rV~Gv~nL~V~-DaSv~P~~~~~np~~ti~alA~r~A~~i~~ 449 (458)
|=|=.||+.+||.|++|+|-+ |.+-+|.. -| +.-+|++-++.+.+
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~---~~---tAQVA~QqG~yLAk 390 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGL---KP---TAQVAEQQGAYLAK 390 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccC---cc---HHHHHHHHHHHHHH
Confidence 444599999999999999966 55534433 33 34566666655543
No 195
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=24.40 E-value=2e+02 Score=28.96 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+.+.+++|+.++.|+.|..++++ + .|.+ .+|+ ++ .++.||.|.|+
T Consensus 122 ~~~~gv~v~~~~~v~~i~~~~~~-----v-~v~~--~~g~--~~-----~a~~vVgAdG~ 166 (405)
T PRK05714 122 LHDSDIGLLANARLEQMRRSGDD-----W-LLTL--ADGR--QL-----RAPLVVAADGA 166 (405)
T ss_pred HhcCCCEEEcCCEEEEEEEcCCe-----E-EEEE--CCCC--EE-----EeCEEEEecCC
Confidence 34458999999999998765441 2 2443 3454 23 37999999997
No 196
>PRK06834 hypothetical protein; Provisional
Probab=24.39 E-value=1.9e+02 Score=30.38 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=32.6
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcC
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALG 169 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~ 169 (458)
+.+.+++|+.++.|+.|..++++ |.+...+|+ ++ .++.||.|.|+-.
T Consensus 110 l~~~gv~i~~~~~v~~v~~~~~~--------v~v~~~~g~--~i-----~a~~vVgADG~~S 156 (488)
T PRK06834 110 VGELGVPIYRGREVTGFAQDDTG--------VDVELSDGR--TL-----RAQYLVGCDGGRS 156 (488)
T ss_pred HHhCCCEEEcCCEEEEEEEcCCe--------EEEEECCCC--EE-----EeCEEEEecCCCC
Confidence 34458999999999999876552 333323453 34 3799999999843
No 197
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=24.19 E-value=1.9e+02 Score=28.76 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
..++.++..++.|+.|..+++ .+ .|.+ .+|. ++ .++.||.|.|.-
T Consensus 124 ~~~g~~~~~~~~v~~i~~~~~-----~~-~v~~--~~g~--~~-----~a~~vI~AdG~~ 168 (395)
T PRK05732 124 KAPGVTLHCPARVANVERTQG-----SV-RVTL--DDGE--TL-----TGRLLVAADGSH 168 (395)
T ss_pred cCCCcEEEcCCEEEEEEEcCC-----eE-EEEE--CCCC--EE-----EeCEEEEecCCC
Confidence 447899999999999876544 22 2443 2453 23 378999999973
No 198
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=24.12 E-value=1.1e+02 Score=32.57 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=33.1
Q ss_pred cCCc-ccCCCCeeec-----cCCceEeecc---cCC-CCC-CCChHHHHHHHHHHHHHHHHHH
Q 012707 399 QVGK-VVDHDYKVLG-----VDALRVIDGS---TFY-YSP-GTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 399 rMG~-VVD~~~rV~G-----v~nL~V~DaS---v~P-~~~-~~np~~ti~alA~r~A~~i~~~ 450 (458)
-||| .+|.++||-+ ++|||.+..- ++- .-+ +++.....+..+..+++++.++
T Consensus 494 T~GGl~id~~~qVld~~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 494 TKGGLRTDVRGRVLRDDGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred eCCCceECCCceEECCCCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 3443 5666666655 7999999644 442 122 2556677788888888877653
No 199
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=23.97 E-value=40 Score=24.21 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.8
Q ss_pred HHHHhhc--CCCcceeecCCccCC
Q 012707 172 QLLMLSG--AHNITVVLDQPLVGQ 193 (458)
Q Consensus 172 ~LLl~SG--~~gI~~~~d~p~VG~ 193 (458)
.||-+|. ++||.+.+....|||
T Consensus 34 diLT~s~~Hp~GIKVrL~dG~VGR 57 (62)
T TIGR03833 34 DILTNSPTHPHGIKVRLEDGQVGR 57 (62)
T ss_pred hhhcCCCCCCCceEEEEecCCeee
Confidence 5788887 999999998888997
No 200
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=23.84 E-value=1e+02 Score=30.62 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=37.3
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
+-+-.++++-.|.+..+.++ ++++|..+ ++....+ .++++|||.|.+-|-
T Consensus 270 ~~Gg~~m~Gd~V~~a~~~~~-----~v~~i~tr--n~~diP~-----~a~~~VLAsGsffsk 319 (421)
T COG3075 270 QLGGLWMPGDEVKKATCKGG-----RVTEIYTR--NHADIPL-----RADFYVLASGSFFSK 319 (421)
T ss_pred HcCceEecCCceeeeeeeCC-----eEEEEEec--ccccCCC-----ChhHeeeeccccccc
Confidence 34666889999999999876 68888775 3443344 489999999986653
No 201
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.78 E-value=3e+02 Score=20.76 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=22.7
Q ss_pred cEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEe
Q 012707 119 ASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYL 153 (458)
Q Consensus 119 ~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~ 153 (458)
..|.+|.+++++ ..-|++.+.+|+...+++
T Consensus 43 ~~v~~ve~~~~g-----~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 43 YQVREVEFDDDG-----CYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CceEEEEEcCCC-----EEEEEEEECCCCEEEEEE
Confidence 378999996664 577887777898877764
No 202
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=23.74 E-value=1.8e+02 Score=32.92 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=43.4
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.....+++|++++.|++|.-++.. ....|.+. +|+. + .++.||+|+|.--...|+..+|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcC
Confidence 344579999999999999754332 45666664 4553 4 4799999999888888877777
No 203
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.60 E-value=1.2e+02 Score=22.55 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=23.3
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEE
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFR 142 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~ 142 (458)
...+.|+++++++.|++|.-+++ ..+ |.+.
T Consensus 49 ~l~~~gV~v~~~~~v~~i~~~~~-----~~~-V~~~ 78 (80)
T PF00070_consen 49 YLRKRGVEVHTNTKVKEIEKDGD-----GVE-VTLE 78 (80)
T ss_dssp HHHHTTEEEEESEEEEEEEEETT-----SEE-EEEE
T ss_pred HHHHCCCEEEeCCEEEEEEEeCC-----EEE-EEEe
Confidence 44456999999999999998776 255 7765
No 204
>PF10555 MraY_sig1: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ; InterPro: IPR018480 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (MraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis []. It catalyses the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. MraY is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologues of MraY have been found in archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress). This entry represents two conserved sites found in these proteins. The first site is located at the end of the first cytoplasmic loop and the beginning of the second transmembrane domain. The second site is located in the third cytoplasmic loop.
Probab=23.31 E-value=34 Score=16.58 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=6.0
Q ss_pred ccccCCccc
Q 012707 396 GGCQVGKVV 404 (458)
Q Consensus 396 GTcrMG~VV 404 (458)
||=-||||+
T Consensus 3 gTPTMGGi~ 11 (13)
T PF10555_consen 3 GTPTMGGIV 11 (13)
T ss_pred CCccceeEE
Confidence 666677764
No 205
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=23.22 E-value=1e+02 Score=30.94 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=29.4
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
+.+.+|++++.|++|..++++ ++.+ +.. +|+. + .++.||++.-+
T Consensus 209 ~~g~~i~~~~~V~~i~~~~~~-----~~~~-~~~-~g~~--~-----~~d~vi~a~p~ 252 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANAGG-----IRAL-VLS-GGET--L-----PADAVVLAVPP 252 (419)
T ss_pred HcCCEEEcCCeeeEEEEcCCc-----ceEE-Eec-CCcc--c-----cCCEEEEcCCH
Confidence 447899999999999987652 3322 222 3432 3 47889997664
No 206
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=22.97 E-value=1.1e+02 Score=32.04 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCc-ccCCCCeeeccCCceEeecccCCCC-----CCCChHHHHHHHHHHHHHHHHHHH
Q 012707 400 VGK-VVDHDYKVLGVDALRVIDGSTFYYS-----PGTNPQATVMMLGRYMGVRILSER 451 (458)
Q Consensus 400 MG~-VVD~~~rV~Gv~nL~V~DaSv~P~~-----~~~np~~ti~alA~r~A~~i~~~~ 451 (458)
||| .||.++|. .++|||.++=...--. .+.|.-+-.+..|.|+|+.|..+.
T Consensus 341 mGGI~vD~~GrT-si~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 341 MGGIAVDANGRT-SIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred cccEEECCCCcc-cCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 665 79999999 6999999987655544 345777888999999999998653
No 207
>PRK06370 mercuric reductase; Validated
Probab=22.56 E-value=2e+02 Score=29.66 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchH
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQ 172 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~ 172 (458)
.+...++++++++.|.+|.-+++ ...|.+.. .+...++ .++.||+|.|..-...
T Consensus 221 ~l~~~GV~i~~~~~V~~i~~~~~------~~~v~~~~-~~~~~~i-----~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 221 ILEREGIDVRLNAECIRVERDGD------GIAVGLDC-NGGAPEI-----TGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHhCCCEEEeCCEEEEEEEcCC------EEEEEEEe-CCCceEE-----EeCEEEECcCCCcCCC
Confidence 34557999999999999975543 12344432 2222334 3799999999765555
No 208
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=22.54 E-value=1.5e+02 Score=31.17 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=37.9
Q ss_pred cccCCc-ccCCCCeeec-----cCCceEeec---ccCC-CCCCCChHHHHHHHHHHHHHHHHHH
Q 012707 397 GCQVGK-VVDHDYKVLG-----VDALRVIDG---STFY-YSPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 397 TcrMG~-VVD~~~rV~G-----v~nL~V~Da---Sv~P-~~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
.+-||| .+|.++||-+ ++|||.+.- +++- .-.++|....++..+..+++++.+.
T Consensus 439 ~~T~GGl~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~ 502 (506)
T PRK06481 439 HYTMGGVKINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEF 502 (506)
T ss_pred eecccCeEECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 344665 5788888754 899999965 3443 3345788888888888888877653
No 209
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=22.49 E-value=2.3e+02 Score=28.95 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=39.0
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.....++++++++.|++|. +++ +..+|.. ++. ++ .++.||+|.|..-+..+|..+|
T Consensus 200 ~l~~~gI~v~~~~~v~~i~--~~~----~~~~v~~---~~~--~i-----~~d~vi~a~G~~p~~~~l~~~g 255 (444)
T PRK09564 200 ELRENGVELHLNEFVKSLI--GED----KVEGVVT---DKG--EY-----EADVVIVATGVKPNTEFLEDTG 255 (444)
T ss_pred HHHHCCCEEEcCCEEEEEe--cCC----cEEEEEe---CCC--EE-----EcCEEEECcCCCcCHHHHHhcC
Confidence 3445689999999999984 222 3555543 233 24 3689999999877777888776
No 210
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=22.17 E-value=1.9e+02 Score=30.88 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=37.9
Q ss_pred CCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEe-------C-------CCceeEEEeccCCCceEEEcCCCcCchHHHH
Q 012707 110 PSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRD-------A-------TGAKHRAYLKNGPKNEIIVSAGALGSPQLLM 175 (458)
Q Consensus 110 r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~-------~-------~g~~~~v~~~~~~~~eVILsAGai~SP~LLl 175 (458)
..++++++++.+.+|.-++++ ++ ||++.. . .|+.+++ .++.||+|.|..-.+.+|.
T Consensus 317 ~~GVki~~~~~~~~i~~~~~~----~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i-----~~D~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDENG----AT-GLRVITVEKMELDEDGRPSPVTGEEETL-----EADLVVLAIGQDIDSAGLE 386 (564)
T ss_pred HcCCEEEecCCcEEEEcCCCC----EE-EEEEEEEEecccCCCCCeeecCCceEEE-----ECCEEEECcCCCCchhhhh
Confidence 468999999999999765543 33 776521 1 2333455 4799999999665555655
No 211
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=22.13 E-value=2.1e+02 Score=28.58 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=31.9
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCch
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSP 171 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP 171 (458)
..+|++++.++.|+.+..+++ .+.|.+. +|+ ++ .++.||.|.|+ .|+
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~~------~~~v~~~--~g~--~~-----~a~~vI~AdG~-~S~ 170 (391)
T PRK08020 124 AHPNVTLRCPASLQALQRDDD------GWELTLA--DGE--EI-----QAKLVIGADGA-NSQ 170 (391)
T ss_pred cCCCcEEEcCCeeEEEEEcCC------eEEEEEC--CCC--EE-----EeCEEEEeCCC-Cch
Confidence 346999999999999876554 2234442 453 34 36899999996 443
No 212
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=22.13 E-value=1.5e+02 Score=30.30 Aligned_cols=51 Identities=18% Similarity=0.018 Sum_probs=34.0
Q ss_pred CC-cccCCCCeeec-----cCCceEeec----ccCCC-CCCCChHHHHHHHHHHHHHHHHHH
Q 012707 400 VG-KVVDHDYKVLG-----VDALRVIDG----STFYY-SPGTNPQATVMMLGRYMGVRILSE 450 (458)
Q Consensus 400 MG-~VVD~~~rV~G-----v~nL~V~Da----Sv~P~-~~~~np~~ti~alA~r~A~~i~~~ 450 (458)
|| =.+|.++||-. ++|||.+.. +++-. -.++|-....+..+..+++++.+.
T Consensus 368 ~GGl~id~~~~Vl~~~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~ 429 (432)
T TIGR02485 368 RYGLVVDATARVRLNDAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARL 429 (432)
T ss_pred ccceEECCCceEECCCCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 44 37788888877 489999983 24321 234666677778888887776543
No 213
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=21.94 E-value=1.7e+02 Score=30.33 Aligned_cols=57 Identities=14% Similarity=0.212 Sum_probs=37.5
Q ss_pred CCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 111 SGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 111 ~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
-..+|..++.|+.+.++.++ ..--|.+. +|...+. .++.||+|.|.++.|.+=-.-|
T Consensus 97 ~~~~i~~~~~v~~~~~~~~~----~~w~V~~~--~~~~~~~-----~a~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 97 LRFQIRFNTRVEVADWDEDT----KRWTVTTS--DGGTGEL-----TADFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred ceeEEEcccceEEEEecCCC----CeEEEEEc--CCCeeeE-----ecCEEEEeecCCCCCCCCCCCC
Confidence 35566667777778888764 34445554 3333333 4799999999988887655554
No 214
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.90 E-value=1.6e+02 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=36.3
Q ss_pred cCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 108 ANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 108 ~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
..+.++++++++.|++|.-+++ ...|++.+ +|+..++ .++.||+|.|..-...+|
T Consensus 223 l~~~gV~i~~~~~V~~i~~~~~------~v~v~~~~-gg~~~~i-----~~D~vi~a~G~~p~~~~l 277 (462)
T PRK06416 223 LKKRGIKIKTGAKAKKVEQTDD------GVTVTLED-GGKEETL-----EADYVLVAVGRRPNTENL 277 (462)
T ss_pred HHHcCCEEEeCCEEEEEEEeCC------EEEEEEEe-CCeeEEE-----EeCEEEEeeCCccCCCCC
Confidence 3456899999999999975443 22344433 3443445 479999999976555554
No 215
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=21.29 E-value=2.3e+02 Score=28.33 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=31.4
Q ss_pred hhcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCC
Q 012707 106 EYANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 106 ~~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGa 167 (458)
..+...+++|+.++.|+.|..+++ .+ .|++ .+|. ++ .++.||.|.|+
T Consensus 119 ~~~~~~gv~v~~~~~v~~i~~~~~-----~v-~v~~--~~g~--~~-----~ad~vI~AdG~ 165 (403)
T PRK07333 119 KRAEALGIDLREATSVTDFETRDE-----GV-TVTL--SDGS--VL-----EARLLVAADGA 165 (403)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCC-----EE-EEEE--CCCC--EE-----EeCEEEEcCCC
Confidence 333445899999999999976654 22 3444 2454 34 36889988886
No 216
>PRK07190 hypothetical protein; Provisional
Probab=21.22 E-value=2.2e+02 Score=29.89 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCc
Q 012707 109 NPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGAL 168 (458)
Q Consensus 109 ~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai 168 (458)
...+++|..++.|+.|..++++ |.+...+|+ ++ .++.||.|.|+-
T Consensus 120 ~~~Gv~v~~~~~v~~l~~~~~~--------v~v~~~~g~--~v-----~a~~vVgADG~~ 164 (487)
T PRK07190 120 KEAGAAVKRNTSVVNIELNQAG--------CLTTLSNGE--RI-----QSRYVIGADGSR 164 (487)
T ss_pred HHCCCEEEeCCEEEEEEEcCCe--------eEEEECCCc--EE-----EeCEEEECCCCC
Confidence 3458999999999999887652 222223453 45 379999999973
No 217
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=21.16 E-value=1.5e+02 Score=32.37 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=36.4
Q ss_pred cCCc-ccCCCCeeeccCCceEeecccCCC-----CCCCChHHHHHHHHHHHHHHHHH
Q 012707 399 QVGK-VVDHDYKVLGVDALRVIDGSTFYY-----SPGTNPQATVMMLGRYMGVRILS 449 (458)
Q Consensus 399 rMG~-VVD~~~rV~Gv~nL~V~DaSv~P~-----~~~~np~~ti~alA~r~A~~i~~ 449 (458)
.||| .||.++++..++|||.|.-..--. -.++|..+-.+..+.++++.+.+
T Consensus 371 tmGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~ 427 (657)
T PRK08626 371 SMGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVAD 427 (657)
T ss_pred ecCCceECCCCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 4666 569999998899999998653211 23457777777778877776654
No 218
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=20.57 E-value=2.6e+02 Score=28.15 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=38.6
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhhc
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLSG 178 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~SG 178 (458)
.....++++++++.|++|.- ++ ...|+. .+|+. + .++.||+|.|..-...|+..+|
T Consensus 195 ~l~~~GV~i~~~~~V~~i~~--~~-----~~~v~l--~~g~~--i-----~aD~Vv~a~G~~pn~~l~~~~g 250 (396)
T PRK09754 195 RHQQAGVRILLNNAIEHVVD--GE-----KVELTL--QSGET--L-----QADVVIYGIGISANDQLAREAN 250 (396)
T ss_pred HHHHCCCEEEeCCeeEEEEc--CC-----EEEEEE--CCCCE--E-----ECCEEEECCCCChhhHHHHhcC
Confidence 33456899999999999854 21 223444 24543 4 3799999999887777776666
No 219
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=20.40 E-value=2.5e+02 Score=28.34 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=33.1
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCC-----CceeEEEeccCCCceEEEcCCC
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDAT-----GAKHRAYLKNGPKNEIIVSAGA 167 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~-----g~~~~v~~~~~~~~eVILsAGa 167 (458)
.+.+.+.+|+.++ |..+...... ....+|++...+ |+..++. ++.||.|.|+
T Consensus 102 ~a~~~G~~v~~~~-~~~i~~~~~~---~~~~~v~~~~~~~~~~~g~~~~i~-----a~~VIgADG~ 158 (398)
T TIGR02028 102 RAADAGATLINGL-VTKLSLPADA---DDPYTLHYISSDSGGPSGTRCTLE-----VDAVIGADGA 158 (398)
T ss_pred HHHHCCcEEEcce-EEEEEeccCC---CceEEEEEeeccccccCCCccEEE-----eCEEEECCCc
Confidence 3445689998885 7776543221 135677765432 5545563 7999999996
No 220
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=20.39 E-value=1.7e+02 Score=30.05 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=30.9
Q ss_pred eEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHH
Q 012707 113 LTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLL 174 (458)
Q Consensus 113 l~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LL 174 (458)
.+|++++.|++|..++++ + .|+. .+|+ ++ .++.||+|.-+-..++||
T Consensus 238 ~~i~~~~~V~~I~~~~~~-----~-~v~~--~~g~--~~-----~ad~VI~t~P~~~~~~ll 284 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN-----Y-TLEL--DNGV--TV-----ETDSVVVTAPHKAAAGLL 284 (462)
T ss_pred CeEEcCCeEEEEEecCCc-----E-EEEE--CCCc--EE-----EcCEEEECCCHHHHHHHh
Confidence 579999999999876542 2 2433 3453 33 368999988865555444
No 221
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=20.33 E-value=1.8e+02 Score=29.00 Aligned_cols=58 Identities=22% Similarity=0.188 Sum_probs=39.8
Q ss_pred hcCCCCeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcCCCcCchHHHHhh
Q 012707 107 YANPSGLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSAGALGSPQLLMLS 177 (458)
Q Consensus 107 ~~~r~nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsAGai~SP~LLl~S 177 (458)
.+..-+..++.+..|.-+.+.++. -.+|.+...+|..+ -+|.+|+++|| -+.+||-.|
T Consensus 162 ~~~~~G~i~~dg~~v~~~~~~~e~-----~~~v~V~Tt~gs~Y-------~akkiI~t~Ga-Wi~klL~~~ 219 (399)
T KOG2820|consen 162 KARELGVIFRDGEKVKFIKFVDEE-----GNHVSVQTTDGSIY-------HAKKIIFTVGA-WINKLLPTS 219 (399)
T ss_pred HHHHcCeEEecCcceeeEeeccCC-----CceeEEEeccCCee-------ecceEEEEecH-HHHhhcCcc
Confidence 344568899999999999887653 33444444455533 37999999998 455666544
No 222
>PLN02268 probable polyamine oxidase
Probab=20.29 E-value=1.8e+02 Score=29.72 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=27.0
Q ss_pred CeEEEcccEEEEEEEecCCCCCCeEEEEEEEeCCCceeEEEeccCCCceEEEcC
Q 012707 112 GLTLLLHASVHKVLFRIKGKARPVAHGVVFRDATGAKHRAYLKNGPKNEIIVSA 165 (458)
Q Consensus 112 nl~v~t~~~V~rI~~~~~~~~~~~a~GV~~~~~~g~~~~v~~~~~~~~eVILsA 165 (458)
++.|.+++.|++|..++++ |.+...+|+. + .++.||+|.
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--------v~v~~~~g~~--~-----~ad~VIva~ 248 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--------VKVTVEDGTT--F-----VADAAIIAV 248 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--------EEEEECCCcE--E-----EcCEEEEec
Confidence 6789999999999886652 3333335543 3 368999995
Done!