BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012708
(458 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYC2|PAO_ARATH Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=PAO PE=1 SV=1
Length = 537
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/460 (75%), Positives = 386/460 (83%), Gaps = 16/460 (3%)
Query: 1 MALLLSTTANITTSPRKTLPFLATGTPKRQITVKSLQKRSKNL-SPLRVAAPPSDPAASD 59
+ LL ST+A IT S K +PFL+ T K + V RSK +PLRVAAPPS P +
Sbjct: 3 VVLLSSTSATITKSQSKKIPFLSPTT-KFPLKVSISPSRSKLFHNPLRVAAPPSVPTSDS 61
Query: 60 EETMRKDEKEDYGSLVDDEYG--KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRD 117
E R +++EYG KE S+F WRDHWYPVSLVEDLDPN+PT FQLLGRD
Sbjct: 62 TEEKR----------IEEEYGGDKEEEGSEFKWRDHWYPVSLVEDLDPNVPTPFQLLGRD 111
Query: 118 LVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAS 177
LVLWFD N KW AFDD CPHRLAPLSEGR+DENGHLQCSYHGWSF GCGSCTRIPQAA+
Sbjct: 112 LVLWFDRNDQKWAAFDDLCPHRLAPLSEGRLDENGHLQCSYHGWSFGGCGSCTRIPQAAT 171
Query: 178 EGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVT 237
GPEARA++SPRACA +FPTMVSQGLLFVWPDE G +RAN+ +PP LPD FDKPEFS+VT
Sbjct: 172 SGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVT 231
Query: 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPR 297
IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFK+ESSG WGF GAND +PR
Sbjct: 232 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPR 291
Query: 298 ISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTM 357
I+AKFVAPCY MNKIE+D KLP+VG+QKW+IWICSFN+PMAPGKTRSIVCSARNFFQF++
Sbjct: 292 ITAKFVAPCYSMNKIELDAKLPIVGNQKWVIWICSFNIPMAPGKTRSIVCSARNFFQFSV 351
Query: 358 PGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSE-DVNKEYTKITFTPT 416
PGPAWWQVVPRW+EHWTSN VYDGDMIVLQGQEK+FL+K ME + DVNK+YTK+TFTPT
Sbjct: 352 PGPAWWQVVPRWYEHWTSNLVYDGDMIVLQGQEKVFLAKSMESPDYDVNKQYTKLTFTPT 411
Query: 417 QADRLVLAFRNWLRRHGNSQPEWFGFS-SQQPSPSTVLSK 455
QADR VLAFRNWLRRHG SQPEWFG + S QP PSTVL+K
Sbjct: 412 QADRFVLAFRNWLRRHGKSQPEWFGSTPSNQPLPSTVLTK 451
>sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52,
chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
Length = 559
Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/406 (32%), Positives = 202/406 (49%), Gaps = 68/406 (16%)
Query: 82 ESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA 141
E KF W +WYPV + DLD +P +++G DLV+W+D N +W DD CPHRLA
Sbjct: 73 EPGSDKFDWYANWYPVMPICDLDKKVPHGKKVMGIDLVVWWDRNEKQWKVMDDTCPHRLA 132
Query: 142 PLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQ 201
PLS+GRID+ G LQC YHGW F+G G C IPQA +GP + +AC +P+ V
Sbjct: 133 PLSDGRIDQWGRLQCVYHGWCFNGSGDCKLIPQAPPDGPPVHTFK--QACVAVYPSTVQH 190
Query: 202 GLLFVWP--DEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHI 259
+++ WP D + KPP +P+ + P F+ + RD+ YGYD L+EN+ DP+H+
Sbjct: 191 EIIWFWPNSDPKYKNIIETNKPPYIPE-LEDPSFTKLMGNRDIPYGYDVLVENLMDPAHV 249
Query: 260 DFAHH------KVTGR-------------------------RDRAKPLPFKLESSGHWGF 288
+AH+ K G+ R+ KPL ++ + GF
Sbjct: 250 PYAHYGLMRFPKPKGKYIICISNSCFNPFTNLQILLAEKIDREGGKPLEINVKKLDNKGF 309
Query: 289 AGANDGNPRISAKFVAPCYY------MNKIEIDTKLPVVGDQKW-------IIWICSFNV 335
+ + F+APC Y + + E + P D+ +I+IC +
Sbjct: 310 FSKQEWG---YSNFIAPCVYRSSTDPLPEQEHEYPAPAASDKAALSKRRLSLIFIC---I 363
Query: 336 PMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLS 395
P++PG++R I RNF F ++VPRW H N + D D+ +L +E+ L
Sbjct: 364 PVSPGRSRLIWTFPRNFGVFID------KIVPRWVFHIGQNTILDSDLHLLHVEERKILE 417
Query: 396 KLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQPEWFG 441
+ G E+ + K F PT++D V+ FR W ++ ++ +W G
Sbjct: 418 R---GPEN----WQKACFIPTKSDANVVTFRRWFNKYSEARVDWRG 456
>sp|O49931|TIC55_PEA Protein TIC 55, chloroplastic OS=Pisum sativum GN=TIC55 PE=1 SV=1
Length = 553
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 111/386 (28%), Positives = 191/386 (49%), Gaps = 34/386 (8%)
Query: 65 KDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDN 124
+D+K G + E E + + W + WYP+ L +++ + P ++ +++VL+ D
Sbjct: 74 EDQKVLVGPSSEQERKGEREVADYDWTEEWYPLYLTKNVPHDAPLGLKVYDKNIVLFRDG 133
Query: 125 NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARA 184
N +++ ++D+CPHRLA LSEG++ + G L+C YHGW F+G G C +IPQ ++ ++
Sbjct: 134 N-DQFQCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPADAKIPKS 191
Query: 185 IQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFY 244
AC + SQG+L+VW + N +K P + F +P F ++ +L Y
Sbjct: 192 -----ACVKTYEVRDSQGVLWVWMSR--KTPPNVSKIPWFEN-FARPGFQDISTTHELPY 243
Query: 245 GYDTLMENVSDPSHIDFAHHKV--TGRRDRAKPLPFKLESSGHWGFAG----ANDGNPRI 298
+ L+EN+ DP+H+ +H + + +R+ A+ L F++ GFAG DG+
Sbjct: 244 DHSILLENLMDPAHVPISHDRTDWSAKREDAQALGFEVTERTDRGFAGWWGREKDGSKPN 303
Query: 299 SAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMP 358
+F APC N EI K + +++C P GK+ IV F T
Sbjct: 304 FLRFEAPCVLQNNREIVDKNGEINHFSG-LFLCR---PTGQGKSMLIV-----RFGATKR 354
Query: 359 GPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQA 418
P ++ P W+ H ++KV++ DM L Q +I L + + E + +
Sbjct: 355 SPL-IKLFPEWYFHQNASKVFEQDMGFLSSQNEILLKEKVPTKE--------LYLNLKSS 405
Query: 419 DRLVLAFRNWLRRHGNSQPEWFGFSS 444
D V +R W+ + G+ P FG S+
Sbjct: 406 DTWVAEYRKWMDKVGHGMPYHFGHST 431
>sp|Q9SK50|TIC55_ARATH Protein TIC 55, chloroplastic OS=Arabidopsis thaliana GN=TIC55 PE=2
SV=1
Length = 539
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 187/394 (47%), Gaps = 48/394 (12%)
Query: 62 TMRKDEKEDYGS-LVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVL 120
T D+ E G L++ E K + + W + WYP+ L +++ + P + R +VL
Sbjct: 55 TAVSDQTEGGGDVLLNPEEEKRVEVADYDWTEEWYPLYLTKNVPEDAPLGLTVYDRQIVL 114
Query: 121 WFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQ--AASE 178
+ D ++D+CPHRLA LSEG++ + G L+C YHGW F+G G C +IPQ A+++
Sbjct: 115 YKDGEGT-LRCYEDRCPHRLAKLSEGQLID-GRLECLYHGWQFEGEGKCVKIPQLPASAK 172
Query: 179 GPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP--DAFDKPEFSSV 236
P+A AC + SQG+++VW P LP + F +P F +
Sbjct: 173 IPKA-------ACVKTYEVKDSQGVVWVW-----MSTKTPPNPEKLPWFENFARPGFFDI 220
Query: 237 TIQRDLFYGYDTLMENVSDPSHIDFAHHKV--TGRRDRAKPLPFKLESSGHWGFAGA--- 291
+ +L Y + L+EN+ DP+H+ +H + T +R+ A+PL F++ + GFAG
Sbjct: 221 STTHELPYDHSILLENLMDPAHVPISHDRTDFTAKREDAQPLVFEVTERSNRGFAGTWGR 280
Query: 292 --NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWI--IWICSFNVPMAPGKTRSIVC 347
G +F APC N E + K G + + +++C P GK+ IV
Sbjct: 281 EKEGGKGSNLLRFDAPCVLQNNREFEGK---DGVKNYFSGLFLCR---PTGQGKSMLIV- 333
Query: 348 SARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKE 407
F T P V+P+W H + KV++ DM L Q ++ + + + +
Sbjct: 334 ----RFGVTKRSPL-VSVLPQWFWHQNACKVFEQDMGFLSSQNEVLMKEKVPTKD----- 383
Query: 408 YTKITFTPTQADRLVLAFRNWLRRHGNSQPEWFG 441
+ +D V +R W+ + G+ P FG
Sbjct: 384 ---LYLNLKSSDTWVAEYRKWMDKVGHGMPYHFG 414
>sp|Q9XJ38|CAO_DUNSA Chlorophyllide a oxygenase, chloroplastic OS=Dunaliella salina
GN=CAO PE=2 SV=1
Length = 463
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 144/354 (40%), Gaps = 64/354 (18%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
R+ WYP + L+P + F L G VL+ D +S D C HR PLS G++
Sbjct: 131 RNFWYPTEFAKKLEPGMMVPFDLFGVPWVLFRDEHSAP-TCIKDSCAHRACPLSLGKVI- 188
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRAC----ATRFPTMVSQGLLFV 206
NGH+QC YHGW FDG G+CT++P S R C P + G ++V
Sbjct: 189 NGHVQCPYHGWEFDGSGACTKMP-------------STRMCHGVGVAALPCVEKDGFVWV 235
Query: 207 WPDEYGQERANA--TKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHH 264
WP + T PP D + I D+ + LMEN+ D +H F H
Sbjct: 236 WPGDGPPPDLPPDFTAPPAGYDVHAE-------IMVDVPVEHGLLMENLLDLAHAPFTH- 287
Query: 265 KVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQ 324
T R P+P + AG D P IS F PC ++ I + ++
Sbjct: 288 --TTTFARGWPIPEAVRFHATKMLAGDWDPYP-ISMSFNPPCIALSTIGLSQPGKIMRGY 344
Query: 325 K--------WIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHW--T 374
K + +C +P G TR + + +F+ W + VP W
Sbjct: 345 KAEECKRHLHQLHVC---MPSKEGHTRLLYRMSLDFW-------GWAKHVPFVDVLWKKI 394
Query: 375 SNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNW 428
+ +V D++++ GQ+ M G +D TP D+L + +R W
Sbjct: 395 AGQVLGEDLVLVLGQQ-----ARMIGGDDT-------WCTPMPYDKLAVRYRRW 436
>sp|Q9ZWM5|CAO_CHLRE Chlorophyllide a oxygenase, chloroplastic OS=Chlamydomonas
reinhardtii GN=CAO PE=2 SV=2
Length = 645
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 146/362 (40%), Gaps = 57/362 (15%)
Query: 80 GKESS-DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPH 138
G ESS + + R+ WYP L + F+L G V+ F + + D+C H
Sbjct: 290 GLESSMEIEEGLRNFWYPAEFSARLPKDTLVPFELFGEPWVM-FRDEKGQPSCIRDECAH 348
Query: 139 RLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTM 198
R PLS G++ E G + C YHGW F+G G+CT++P P R + P
Sbjct: 349 RGCPLSLGKVVE-GQVMCPYHGWEFNGDGACTKMPST----PFCRNV-----GVAALPCA 398
Query: 199 VSQGLLFVWPDEYGQERANATKPPMLPDAFDKPE--FSSVTIQRDLFYGYDTLMENVSDP 256
G ++VWP + LPD PE I D+ + L+EN+ D
Sbjct: 399 EKDGFIWVWP-------GDGLPAETLPDFAQPPEGFLIHAEIMVDVPVEHGLLIENLLDL 451
Query: 257 SHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDT 316
+H F H T R P+P ++ + +G D P I F PC ++ I +
Sbjct: 452 AHAPFTH---TSTFARGWPVPDFVKFHANKALSGFWDPYP-IDMAFQPPCMTLSTIGLAQ 507
Query: 317 KLPVV--------GDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPR 368
++ + + +C +P G TR + + +F W + VP
Sbjct: 508 PGKIMRGVTASQCKNHLHQLHVC---MPSKKGHTRLLYRMSLDFL-------PWMRHVPF 557
Query: 369 WHEHW--TSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFR 426
W + +V D++++ GQ+ +++ G + + P D+L + +R
Sbjct: 558 IDRIWKQVAAQVLGEDLVLVLGQQ----DRMLRGGSNWS--------NPAPYDKLAVRYR 605
Query: 427 NW 428
W
Sbjct: 606 RW 607
>sp|Q9AHG3|TSAM2_COMTE Putative toluene-4-sulfonate monooxygenase system iron-sulfur
subunit TsaM2 OS=Comamonas testosteroni GN=tsaM2 PE=5
SV=1
Length = 346
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
++ WY + D P A L +VL F + VA +D+C HRLAPLS G +++
Sbjct: 4 KNTWYVAGMATDCSRK-PLARTFLNEKVVL-FRTHDGHAVALEDRCCHRLAPLSLGDVED 61
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
G ++C YHG F+ G+C IP + P C RFP + GLL++W +
Sbjct: 62 AG-IRCRYHGMVFNASGACVEIP--------GQEQIPPGMCVRRFPLVERHGLLWIWMGD 112
Query: 211 YGQERANATKPPMLPDAF--DKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTG 268
RAN P + D PE+ + + Y +++N+ D +H+ + H G
Sbjct: 113 --PARAN---PDDIVDELWNGAPEWRTDSGYIHYQANYQLIVDNLLDFTHLAWVHPTTLG 167
>sp|Q8S7E1|CAO_ORYSJ Chlorophyllide a oxygenase, chloroplastic OS=Oryza sativa subsp.
japonica GN=CAO PE=2 SV=1
Length = 541
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 145/355 (40%), Gaps = 64/355 (18%)
Query: 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDK----------CPH 138
S ++ WYPV+ DL D ++ D +WV F K C H
Sbjct: 215 SLKNFWYPVAFSSDLK-----------DDTMVPIDCFEEQWVIFRGKDGRPGCVMNTCAH 263
Query: 139 RLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTM 198
R PL G ++E G +QC YHGW + G C ++P R++ P
Sbjct: 264 RACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTKMLNVRIRSL----------PCF 312
Query: 199 VSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFS-SVTIQRDLFYGYDTLMENVSDPS 257
+G++++WP G + +T P +LP + F+ I +L + L++N+ D +
Sbjct: 313 EQEGMVWIWP---GNDPPKSTIPSLLPPS----GFTIHAEIVMELPVEHGLLLDNLLDLA 365
Query: 258 HIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDT- 316
H F H + L L S G G D P I +F PC ++ I I
Sbjct: 366 HAPFTHTSTFAKGWSVPSLVKFLTPSS--GLQGYWDPYP-IDMEFRPPCMVLSTIGISKP 422
Query: 317 -KLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWT- 374
KL ++ + ++ + + ++ R ++ ++ W + VP H W+
Sbjct: 423 GKLEGKSTKQCSTHLHQLHICLPSSRNKT-----RLLYRMSLDFAPWIKHVPFMHILWSH 477
Query: 375 -SNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNW 428
+ KV + D+ ++ GQ++ +++ G+ N P D+L + +R W
Sbjct: 478 FAEKVLNEDLRLVLGQQE----RMINGANVWN--------WPVSYDKLGIRYRLW 520
>sp|P71875|KSHA_MYCTU 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium tuberculosis GN=kshA PE=1 SV=2
Length = 386
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGH 153
W+ + + +D P + G LV++ D++ + V D C H LSEG + +
Sbjct: 26 WHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKV-LDGYCRHMGGDLSEGTV-KGDE 83
Query: 154 LQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATR-FPTMVSQGLLFVWPDEYG 212
+ C +H W + G G C +P A ++PR TR + T V GLLFVW D G
Sbjct: 84 VACPFHDWRWGGDGRCKLVPYAR---------RTPRMARTRSWTTDVRSGLLFVWHDHEG 134
Query: 213 QERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDT--LMENVSDPSHIDFAH 263
A + P +P+A E++ R L G + +++NV+D +H + H
Sbjct: 135 NPPDPAVRIPEIPEAA-SDEWTDWRWNRILIEGSNCRDIIDNVTDMAHFFYIH 186
>sp|Q44256|CBAA_COMTE 3-chlorobenzoate-3,4-dioxygenase oxygenase subunit OS=Comamonas
testosteroni GN=cbaA PE=3 SV=1
Length = 432
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 75/174 (43%), Gaps = 13/174 (7%)
Query: 91 RDHWYPVSLVEDLDPN-LPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID 149
R++W P +L+ P LLG LV F S D +CPHR L GR++
Sbjct: 24 REYWIPALKSTELEAGGSPVRLLLLGEKLVA-FREPSGAVGVMDSRCPHRGVSLFMGRVE 82
Query: 150 ENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209
E G L+C YHGW F G C +P S PE S R R+P G+++V+
Sbjct: 83 EGG-LRCVYHGWKFSAEGKCVDMP---SVRPEDEFKNSVRVA--RYPVKEMAGVVWVY-- 134
Query: 210 EYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAH 263
G + P + + E + +QR + + +E D SH +F H
Sbjct: 135 -MGTRKVLPELPRLEVLNLPENEVDVICLQRKSNWLQN--LEGEIDTSHFNFLH 185
>sp|Q9MBA1|CAO_ARATH Chlorophyllide a oxygenase, chloroplastic OS=Arabidopsis thaliana
GN=CAO PE=1 SV=1
Length = 536
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 137/343 (39%), Gaps = 44/343 (12%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
++ WYPV+ DL + + + V+ F K + C HR PL G ++E
Sbjct: 218 KNFWYPVAFTADLKHDTMVPIECFEQPWVI-FRGEDGKPGCVRNTCAHRACPLDLGTVNE 276
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
G +QC YHGW + G C ++P + +++ P + +G++++WP
Sbjct: 277 -GRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSL----------PCLEQEGMIWIWP-- 323
Query: 211 YGQERANATKPPML-PDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR 269
G E P + P F + DL + L++N+ D +H F H +
Sbjct: 324 -GDEPPAPILPSLQPPSGF----LIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAK 378
Query: 270 RDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDT--KLPVVGDQKWI 327
L L + G G D P I +F PC ++ I I KL Q+
Sbjct: 379 GWSVPSLVKFLTPTS--GLQGYWDPYP-IDMEFKPPCIVLSTIGISKPGKLEGKSTQQCA 435
Query: 328 IWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWT--SNKVYDGDMIV 385
+ +V + K ++ R ++ ++ + +P W + +V + D+ +
Sbjct: 436 THLHQLHVCLPSSKNKT-----RLLYRMSLDFAPILKNLPFMEHLWRHFAEQVLNEDLRL 490
Query: 386 LQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNW 428
+ GQ++ +++ G+ N P D+L + +R W
Sbjct: 491 VLGQQE----RMLNGANIWN--------LPVAYDKLGVRYRLW 521
>sp|Q52185|POBA_PSEPS Phenoxybenzoate dioxygenase subunit alpha OS=Pseudomonas
pseudoalcaligenes GN=pobA PE=2 SV=1
Length = 409
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 31/194 (15%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
R +W PV+L D+ + P ++LG DLVL+ D + + +C HR L G ++E
Sbjct: 42 RRYWQPVALSADVT-DRPQMVRILGEDLVLFRDKAGRPGLLYP-RCMHRGTSLYYGHVEE 99
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
G ++C YHGW F G+C P G A + P +P GL+F +
Sbjct: 100 AG-IRCCYHGWLFAVDGTCLNQPCEPEGGLRREAARQP-----WYPVEERYGLVFAY--- 150
Query: 211 YGQERANATKPPMLP-----DAFDKPEFSSVTIQRDLFYG---------YDTLM--ENVS 254
K P+LP + ++ EF V + Y Y L EN+
Sbjct: 151 ----MGPPEKKPVLPRYDILEDLEEGEFIEVISGGFVSYADHVEDPNVPYHWLQNWENIM 206
Query: 255 DPSHIDFAHHKVTG 268
DP H+ H +G
Sbjct: 207 DPYHVYILHSTFSG 220
>sp|Q8G8B6|CARAA_PSERE Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Pseudomonas resinovorans GN=carAa PE=1 SV=1
Length = 384
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 29/209 (13%)
Query: 85 DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144
D+K +R+HWYPV +++D P +LLG +L++ + K D+C HR LS
Sbjct: 20 DAKLGFRNHWYPVMFSKEIDEGEPKTLKLLGENLLV--NRIDGKLYCLKDRCLHRGVQLS 77
Query: 145 -EGRIDENGHLQCSYHGWSF---DG--CGSCTRIPQAASEGPEARAIQSPRACATRFPTM 198
+ + C YH W++ DG C T P +A G R +P
Sbjct: 78 VKVECKTKSTITCWYHAWTYRWEDGVLCDILTN-PTSAQIG---------RQKLKTYPVQ 127
Query: 199 VSQGLLFVWPDEYGQERANATKPPMLPDA---FDKPEFSSVTIQRDLFYGYDTLMENVSD 255
++G +F++ + PP+ D F + + + + + +EN D
Sbjct: 128 EAKGCVFIY-------LGDGDPPPLARDTPPNFLDDDMEILGKNQIIKSNWRLAVENGFD 180
Query: 256 PSHIDFAHHKVTGRRDRAKPLPFKLESSG 284
PSHI + H +D LP G
Sbjct: 181 PSHI-YIHKDSILVKDNDLALPLGFAPGG 208
>sp|Q05183|PHT3_PSEPU Phthalate 4,5-dioxygenase oxygenase subunit OS=Pseudomonas putida
GN=pht3 PE=2 SV=1
Length = 439
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 91 RDHWYPVSLVEDL-DPN-LPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI 148
R HW PV L+E++ +P+ P +L G DLV++ D + V D+ CPHR L GR
Sbjct: 24 RRHWTPVCLLEEVSEPDGTPVRARLFGEDLVVFRDTDGRVGV-MDEYCPHRRVSLIYGR- 81
Query: 149 DENGHLQCSYHGWSFDGCGSCTRI 172
+EN L+C YHGW D G+ +
Sbjct: 82 NENSGLRCLYHGWKMDVDGNVVEM 105
>sp|P94679|TSAM1_COMTE Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1
OS=Comamonas testosteroni GN=tsaM1 PE=1 SV=1
Length = 347
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDL----VLWFDNNSNKWVAFDDKCPHRLAPLSEG 146
R+ WY V D +P A L R L VL + + + VA +++C HR APL G
Sbjct: 4 RNCWY----VAAWDTEIP-AEGLFHRTLLNEPVLLYRDTQGRVVALENRCCHRSAPLHIG 58
Query: 147 RIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206
R E ++C YHG F+ G+C IP + P+ C +P + L+++
Sbjct: 59 R-QEGDCVRCLYHGLKFNPSGACVEIP--------GQEQIPPKTCIKSYPVVERNRLVWI 109
Query: 207 WPDEYGQERANATKPPMLPDAF--DKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHH 264
W + RAN P + D F D PE+ Y +++N+ D +H+ + H
Sbjct: 110 WMGD--PARAN---PDDIVDYFWHDSPEWRMKPGYIHYQANYKLIVDNLLDFTHLAWVHP 164
Query: 265 KVTG 268
G
Sbjct: 165 TTLG 168
>sp|A0R4R3|KSHA_MYCS2 3-ketosteroid-9-alpha-monooxygenase oxygenase subunit
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=kshA PE=1 SV=1
Length = 383
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGH 153
W+ + V++ P + + G LV+ F ++ + D C H LS+G + +
Sbjct: 24 WHCLGPVKNFSDGKPHSVNIFGTKLVV-FADSKGELNVLDAYCRHMGGDLSKGTV-KGDE 81
Query: 154 LQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATR-FPTMVSQGLLFVWPDEYG 212
+ C +H W + G G C +P A ++PR TR + T V GLLFVW D G
Sbjct: 82 VACPFHDWRWGGDGKCKLVPYAK---------RTPRLARTRSWHTDVRGGLLFVWHDHEG 132
Query: 213 QERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDT--LMENVSDPSHIDFAH 263
+ P +P+ + E++ L G + +++NV+D +H + H
Sbjct: 133 NPPQPEVRIPEIPE-WHSGEWTDWKWNSMLIEGSNCREIIDNVTDMAHFFYIH 184
>sp|P12609|VANA_PSES9 Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain ATCC 19151) GN=vanA PE=3 SV=1
Length = 329
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 113 LLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172
++ + ++ + + A +D CPHR APLS G I ++G L C YHG D G +
Sbjct: 1 MICNERMVIYRGAGQRVAALEDFCPHRGAPLSLGSI-QDGKLVCGYHGLVMDCDGRTASM 59
Query: 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDA--FDK 230
P A+ +Q+ C FP G ++VWP + A P ++P +
Sbjct: 60 P--------AQRVQA-FPCIRAFPAQERHGFIWVWPGD-----AALADPALIPHLEWAEN 105
Query: 231 PEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRD 271
P ++ + Y +++N+ D +H + H G+++
Sbjct: 106 PAWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQKE 146
>sp|D5IGG0|CARAA_SPHSX Carbazole 1,9a-dioxygenase, terminal oxygenase component CarAa
OS=Sphingomonas sp. GN=carAa PE=1 SV=1
Length = 378
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 16/127 (12%)
Query: 86 SKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145
+K +R+HWYPV L ++ P +LLG ++L + K A D+C HR LS+
Sbjct: 21 AKLGFRNHWYPVRLASEIAEGTPVPVKLLGEKILL--NRVGGKVYAIQDRCLHRGVTLSD 78
Query: 146 GRID--ENGHLQCSYHGWSF---DGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS 200
R++ + C YHGW++ DG R+ + ++Q R FP +
Sbjct: 79 -RVECYSKNTISCWYHGWTYRWDDG-----RLVDILT---NPGSVQIGRRALKTFPVEEA 129
Query: 201 QGLLFVW 207
+GL+FV+
Sbjct: 130 KGLIFVY 136
>sp|O05616|VANA_PSEUH Vanillate O-demethylase oxygenase subunit OS=Pseudomonas sp.
(strain HR199 / DSM 7063) GN=vanA PE=3 SV=1
Length = 354
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 15/181 (8%)
Query: 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE 150
++ WY V+ D + P Q+ +V ++ + A +D CPHR APLS G +
Sbjct: 4 KNAWY-VACTPDEIADKPLGRQICNEKIV-FYRGPEGRVAAVEDFCPHRGAPLSLGFV-R 60
Query: 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210
+G L C YHG G +P +G C + G ++VWP +
Sbjct: 61 DGKLICGYHGLEMGCEGKTLAMPGQRVQG---------FPCIKSYAVEERYGFIWVWPGD 111
Query: 211 YGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRR 270
+E A+ L A D PE++ + Y +++N+ D +H + H G++
Sbjct: 112 --RELADPALIHHLEWA-DNPEWAYGGGLYHIACDYRLMIDNLMDLTHETYVHASSIGQK 168
Query: 271 D 271
+
Sbjct: 169 E 169
>sp|Q17938|DAF36_CAEEL Cholesterol desaturase daf-36 OS=Caenorhabditis elegans GN=daf-36
PE=1 SV=2
Length = 428
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 30/181 (16%)
Query: 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS-EGRIDENG 152
WY V E L N +LG+ L L + ++ D CPH A + GR+ +
Sbjct: 81 WYCVCESEKLANNQIMEITVLGQFLSLIRSESGAVYIT-DSYCPHIGANFNIGGRVVRDN 139
Query: 153 HLQCSYHGWSFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211
+QC +HGW F G C +P PE +A T +P + +++W
Sbjct: 140 CIQCPFHGWIFSAETGKCVEVPYDEGRIPE-------QAKVTTWPCIERNNNIYLWYHCD 192
Query: 212 GQERANATKPPMLPDAFDKPEFSSVT---------IQRDLFYGYDTLMENVSDPSHIDFA 262
G E P+ ++ PE + +T + ++ + EN +D +H+++
Sbjct: 193 GAE----------PE-WEIPEITEITDGFWHLGGRTEHEVMCHIQEIPENGADIAHLNYL 241
Query: 263 H 263
H
Sbjct: 242 H 242
>sp|Q51601|CBDA_BURCE 2-halobenzoate 1,2-dioxygenase large subunit OS=Burkholderia
cepacia GN=cbdA PE=1 SV=3
Length = 465
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 64/170 (37%), Gaps = 12/170 (7%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+GR V+ N + A + C HR A L + C +HGW+F G ++
Sbjct: 76 IGRQPVIITRNKAGDVSAVINACSHRGAELCRRKQGNRSTFTCQFHGWTFSNTGKLLKVK 135
Query: 174 QAASEG-PEARAIQSPRACATRFPTMVS-QGLLF--VWPDEYGQERANATKPPMLPDAFD 229
+ PE + TR P+ + +G LF + PD E +L D
Sbjct: 136 DGQDDNYPEGFNVDGSHDL-TRIPSFANYRGFLFGSMNPDACPIEEHLGGSKAILDQVID 194
Query: 230 KPEFSSVTIQRDLFYGYD----TLMENVSDPSHIDFAH---HKVTGRRDR 272
+ ++ Y YD +EN +D H+ H GRRDR
Sbjct: 195 QTPGELEVLRGSSSYIYDGNWKLQIENGADGYHVGSVHWNYVATIGRRDR 244
>sp|Q10499|AIF1_SCHPO Apoptosis-inducing factor 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aif1 PE=3 SV=3
Length = 611
Score = 41.2 bits (95), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 109 TAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164
T +++G + + N + A KC H APL++G + +GH+ C +HG F+
Sbjct: 70 TEAKVVGTEFGVLLVRARNTYFATAGKCSHYGAPLAKGVVTSDGHIVCPWHGACFN 125
>sp|P23099|XYLX_PSEPU Toluate 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=xylX
PE=3 SV=1
Length = 454
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+GR + N + AF + C HR A L R CS+HGW+F G ++
Sbjct: 70 MGRQPIFITRNKDGELNAFVNACSHRGATLCRFRSGNKATHTCSFHGWTFSNSGKLLKVK 129
Query: 174 QAASEG 179
G
Sbjct: 130 DPKGAG 135
>sp|P0C618|BNZA_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida GN=bnzA
PE=3 SV=1
Length = 450
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + CSYHGW++D G+ +P
Sbjct: 74 MGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
Query: 174 QAA 176
A
Sbjct: 134 YEA 136
>sp|A5W4F2|BNZA_PSEP1 Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida (strain
F1 / ATCC 700007) GN=bnzA PE=1 SV=1
Length = 450
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + CSYHGW++D G+ +P
Sbjct: 74 MGEDPVVVVRQKDASIAVFLNQCRHRGMRICRADAGNAKAFTCSYHGWAYDTAGNLVNVP 133
Query: 174 QAA 176
A
Sbjct: 134 YEA 136
>sp|Q07944|BEDC1_PSEPU Benzene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=bedC1 PE=1 SV=1
Length = 450
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + CSYHGW++D G+ +P
Sbjct: 74 MGEDPVVVVRQKDASIAVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDTAGNLINVP 133
Query: 174 QAA 176
A
Sbjct: 134 YEA 136
>sp|P07769|BENA_ACIAD Benzoate 1,2-dioxygenase subunit alpha OS=Acinetobacter sp. (strain
ADP1) GN=benA PE=3 SV=2
Length = 461
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 39/95 (41%)
Query: 85 DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144
+ K+ + +W ++ + N +GR +L N + + A + C HR A L
Sbjct: 44 EMKYIFEGNWVYLAHESQIPNNNDYYTTYIGRQPILIARNRNGELNAMINACSHRGAQLC 103
Query: 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEG 179
+ C +HGW+F+ G ++ + G
Sbjct: 104 RHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPSDAG 138
>sp|Q51494|NDOB_PSEAI Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas aeruginosa
GN=ndoB PE=3 SV=1
Length = 449
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ N AF + C HR L CSYHGW F G +P
Sbjct: 59 MGVDEVIVSRQNDGSIRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGANGELQSVP 118
>sp|O52382|NDOB_RALSP Naphthalene 1,2-dioxygenase subunit alpha OS=Ralstonia sp. GN=nagAc
PE=1 SV=1
Length = 447
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ N AF + C HR L CSYHGW F G +P
Sbjct: 57 MGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCSYHGWGFGSNGELQSVP 116
>sp|Q8GI16|CARAC_PSERE Ferredoxin CarAc OS=Pseudomonas resinovorans GN=carAc PE=1 SV=1
Length = 107
Score = 36.6 bits (83), Expect = 0.37, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 127 NKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176
+++ A +D C H +A LSEG +D + ++C +HG +F+ CT +P ++
Sbjct: 37 DQFYATEDTCTHGIASLSEGTLDGD-VIECPFHGGAFN---VCTGMPASS 82
>sp|Q52438|BPHA1_PSES1 Biphenyl dioxygenase subunit alpha OS=Pseudomonas sp. (strain
KKS102) GN=bphA1 PE=3 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + C+YHGW++D G+ +P
Sbjct: 79 MGEDPVIMVRQKDGSIKVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDIAGNLVNVP 138
>sp|Q84BZ3|ANDAC_BURCE Anthranilate 1,2-dioxygenase large subunit OS=Burkholderia cepacia
GN=andAc PE=1 SV=1
Length = 423
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 57/160 (35%), Gaps = 35/160 (21%)
Query: 123 DNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP----QAASE 178
D + WV ++C HR A + C YH WSFD G+ +P Q
Sbjct: 85 DGALSAWV---NRCAHRGAQVCRKSRGNASSHTCVYHQWSFDNEGNLLGVPFRRGQKGMT 141
Query: 179 G------PEARAIQSPRACATRFPTMVSQGLLFV--------WPDEYGQERANATKPPML 224
G P+ ++ R + R GL+F PD G A P +
Sbjct: 142 GMPADFDPKQHGLRKLRVDSYR-------GLVFATFSDDVAPLPDYLG-----AQMRPWI 189
Query: 225 PDAFDKP-EFSSVTIQRDLFYGYDTLMENVSDPSHIDFAH 263
F KP E+ T Q + MENV DP H H
Sbjct: 190 DRIFHKPIEYLGCTRQYSK-SNWKLYMENVKDPYHASMLH 228
>sp|P37333|BPHA_BURXL Biphenyl dioxygenase subunit alpha OS=Burkholderia xenovorans
(strain LB400) GN=bphA PE=1 SV=3
Length = 459
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + CSYHGW++D G +P
Sbjct: 78 MGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>sp|Q52028|BPHA_PSEPS Biphenyl dioxygenase subunit alpha OS=Pseudomonas pseudoalcaligenes
GN=bphA PE=3 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + CSYHGW++D G +P
Sbjct: 78 MGEDPVVMVRQKDKSIKVFLNQCRHRGMRICRSDAGNAKAFTCSYHGWAYDIAGKLVNVP 137
>sp|Q3C1E3|TPDA1_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 1 OS=Comamonas sp. GN=tphA2I PE=1 SV=1
Length = 413
Score = 36.6 bits (83), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 131 AFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
AF+++C HR A ++ + QC YH WS++ G T +
Sbjct: 77 AFENRCAHRGALIALEKSGRTDSFQCVYHAWSYNRQGDLTGVA 119
>sp|Q7N4V8|HCAC_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Photorhabdus luminescens subsp. laumondii (strain
TT01) GN=hcaC PE=3 SV=1
Length = 105
Score = 36.6 bits (83), Expect = 0.47, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 128 KWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQA 175
++ A DD+C H A +SEG +++N ++C H SF C R +A
Sbjct: 34 EFFAVDDRCSHGNASISEGYLEDNATVECPLHTASF-----CLRTGKA 76
>sp|Q3C1D5|TPDA2_COMSP Terephthalate 1,2-dioxygenase, terminal oxygenase component subunit
alpha 2 OS=Comamonas sp. GN=tphA2II PE=1 SV=1
Length = 413
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 131 AFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
AF+++C HR A ++ + QC YH WS++ G T +
Sbjct: 77 AFENRCAHRGALIALEKSGRTDSFQCVYHAWSYNRQGDLTGVA 119
>sp|P0A111|NDOB_PSEU8 Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas sp.
(strain C18) GN=doxB PE=1 SV=1
Length = 449
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ N AF + C HR L CSYHGW F G +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|P0A110|NDOB_PSEPU Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas putida
GN=ndoB PE=1 SV=1
Length = 449
Score = 35.8 bits (81), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ N AF + C HR L CSYHGW F G +P
Sbjct: 59 MGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|Q46372|BPHA_COMTE Biphenyl dioxygenase subunit alpha OS=Comamonas testosteroni
GN=bphA PE=1 SV=1
Length = 457
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ F ++C HR + C+YHGW++D G+ +P
Sbjct: 78 MGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVP 137
>sp|O07824|NDOB_PSEFL Naphthalene 1,2-dioxygenase subunit alpha OS=Pseudomonas
fluorescens GN=ndoB PE=3 SV=1
Length = 449
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ + AF + C HR L CSYHGW F G +P
Sbjct: 59 MGIDEVIVSRQSDGSIRAFLNVCRHRGKTLVNAEAGNAKGFVCSYHGWGFGSNGELQSVP 118
>sp|Q83K39|HCAE_SHIFL 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri GN=hcaE PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S + C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRAFTCPYHGWSYGINGELIDVP 122
>sp|A8A344|HCAE_ECOHS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O9:H4 (strain HS) GN=hcaE PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q3YZ15|HCAE_SHISS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella sonnei (strain Ss046) GN=hcaE PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q31XV2|HCAE_SHIBS 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaE
PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR5|HCAE_ECOLI 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli (strain K12) GN=hcaE PE=1 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|P0ABR6|HCAE_ECO57 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Escherichia coli O157:H7 GN=hcaE PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q9LKN0|CHMO_ATRHO Choline monooxygenase, chloroplastic OS=Atriplex hortensis GN=CMO
PE=2 SV=1
Length = 438
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
LG L + K AF + C HR + L+ G + C YHGW + GS T+
Sbjct: 141 LGNVEYLVCRDGEGKVHAFHNVCTHRASILACGS-GKKSCFVCPYHGWVYGMNGSLTKAS 199
Query: 174 QAASE 178
+A E
Sbjct: 200 KATPE 204
>sp|Q0T1Y1|HCAE_SHIF8 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha
OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaE
PE=3 SV=1
Length = 453
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 114 LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIP 173
+G D V+ AF ++C HR +S C YHGWS+ G +P
Sbjct: 63 MGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRAFTCPYHGWSYGINGELIDVP 122
>sp|Q3YZ13|HCAC_SHISS 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit
OS=Shigella sonnei (strain Ss046) GN=hcaC PE=3 SV=1
Length = 106
Score = 33.9 bits (76), Expect = 2.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 124 NNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSF 163
N ++ A +D+C H A +SEG ++++ ++C H SF
Sbjct: 30 NVGGEFYAINDRCSHGNASMSEGYLEDDATVECPLHAASF 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,682,499
Number of Sequences: 539616
Number of extensions: 8148108
Number of successful extensions: 20900
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 20809
Number of HSP's gapped (non-prelim): 76
length of query: 458
length of database: 191,569,459
effective HSP length: 121
effective length of query: 337
effective length of database: 126,275,923
effective search space: 42554986051
effective search space used: 42554986051
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)