Query 012708
Match_columns 458
No_of_seqs 279 out of 2230
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:29:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 1.7E-78 3.7E-83 640.4 39.0 451 1-457 1-455 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 6.2E-52 1.3E-56 431.2 33.4 304 89-432 216-525 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 4.8E-44 1E-48 357.8 25.2 281 90-389 69-372 (394)
4 COG4638 HcaE Phenylpropionate 100.0 2.9E-44 6.4E-49 369.0 22.5 330 68-434 4-357 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 3.5E-39 7.5E-44 334.9 17.7 198 63-268 10-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 3.1E-39 6.6E-44 335.1 11.1 199 63-268 10-218 (438)
7 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 1.8E-33 3.9E-38 253.5 11.4 142 68-212 1-147 (150)
8 cd04338 Rieske_RO_Alpha_Tic55 100.0 1.1E-31 2.4E-36 237.7 14.5 120 86-212 10-129 (134)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 5.7E-31 1.2E-35 229.1 13.7 117 92-212 2-118 (123)
10 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 1E-30 2.2E-35 232.6 14.7 123 86-212 10-133 (138)
11 cd03538 Rieske_RO_Alpha_AntDO 100.0 3.1E-31 6.8E-36 238.0 11.1 139 71-212 2-143 (146)
12 cd03531 Rieske_RO_Alpha_KSH Th 100.0 7.2E-30 1.6E-34 220.3 13.6 111 93-213 1-111 (115)
13 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 1.2E-29 2.5E-34 223.2 13.8 114 87-212 11-124 (129)
14 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 1.4E-29 3.1E-34 226.9 14.2 117 88-211 16-133 (144)
15 cd03539 Rieske_RO_Alpha_S5H Th 100.0 2.2E-29 4.7E-34 221.5 11.9 119 94-213 1-127 (129)
16 cd03532 Rieske_RO_Alpha_VanA_D 100.0 4E-29 8.6E-34 216.0 12.7 112 90-212 2-113 (116)
17 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 9.4E-29 2E-33 219.6 14.8 118 87-212 8-127 (136)
18 cd03541 Rieske_RO_Alpha_CMO Ri 100.0 7.5E-29 1.6E-33 214.5 12.5 113 93-211 1-114 (118)
19 cd03472 Rieske_RO_Alpha_BPDO_l 100.0 6.1E-29 1.3E-33 218.3 11.8 121 89-212 4-125 (128)
20 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 1.7E-27 3.7E-32 207.9 12.1 118 92-212 1-120 (123)
21 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.7E-27 3.7E-32 207.9 12.0 118 94-213 1-119 (123)
22 cd03469 Rieske_RO_Alpha_N Ries 99.9 1.7E-27 3.6E-32 206.0 11.8 114 94-212 1-115 (118)
23 cd03542 Rieske_RO_Alpha_HBDO R 99.9 6.5E-26 1.4E-30 197.7 12.5 115 94-212 1-120 (123)
24 cd03528 Rieske_RO_ferredoxin R 99.9 4E-25 8.7E-30 184.9 12.2 97 94-207 1-98 (98)
25 cd03530 Rieske_NirD_small_Baci 99.9 7.2E-25 1.6E-29 183.6 12.0 97 94-207 1-98 (98)
26 cd03474 Rieske_T4moC Toluene-4 99.9 1.4E-24 3.1E-29 185.1 12.9 102 94-212 1-103 (108)
27 cd03529 Rieske_NirD Assimilato 99.9 1.5E-24 3.2E-29 183.5 12.1 98 94-207 1-103 (103)
28 TIGR02377 MocE_fam_FeS Rieske 99.9 5.1E-24 1.1E-28 179.7 12.4 100 93-208 1-101 (101)
29 TIGR02378 nirD_assim_sml nitri 99.9 5.7E-24 1.2E-28 180.5 11.6 99 93-208 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 2.5E-23 5.5E-28 176.9 12.2 102 93-211 2-104 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 3.8E-23 8.3E-28 172.2 11.0 92 97-205 3-95 (95)
32 PF13806 Rieske_2: Rieske-like 99.9 4.6E-22 9.9E-27 168.4 12.1 98 93-207 1-104 (104)
33 PRK09511 nirD nitrite reductas 99.9 6.6E-22 1.4E-26 168.7 12.0 100 93-207 3-107 (108)
34 PF00355 Rieske: Rieske [2Fe-2 99.9 1.5E-21 3.2E-26 162.9 11.2 94 93-202 1-97 (97)
35 COG2146 {NirD} Ferredoxin subu 99.9 6.8E-21 1.5E-25 161.7 12.9 104 91-209 2-106 (106)
36 cd03467 Rieske Rieske domain; 99.8 1.9E-20 4.2E-25 156.6 11.6 95 94-204 1-97 (98)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 4.2E-20 9.1E-25 152.7 10.1 87 97-200 2-88 (91)
38 cd03476 Rieske_ArOX_small Smal 99.8 2.5E-18 5.4E-23 150.4 11.4 96 95-207 4-114 (126)
39 cd08878 RHO_alpha_C_DMO-like C 99.8 1.7E-17 3.7E-22 153.7 14.7 174 239-432 5-195 (196)
40 cd03471 Rieske_cytochrome_b6f 99.7 9.5E-17 2.1E-21 139.6 12.0 88 105-210 22-113 (126)
41 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 6.4E-17 1.4E-21 135.7 8.4 71 100-173 14-88 (107)
42 TIGR02694 arsenite_ox_S arseni 99.7 3E-16 6.5E-21 137.6 11.2 95 95-205 7-114 (129)
43 cd03470 Rieske_cytochrome_bc1 99.6 3.1E-15 6.7E-20 130.9 11.4 93 98-206 4-125 (126)
44 cd00680 RHO_alpha_C C-terminal 99.5 3E-14 6.4E-19 131.0 11.2 164 238-432 3-186 (188)
45 PRK13474 cytochrome b6-f compl 99.5 1.6E-13 3.6E-18 127.0 11.7 87 104-208 73-163 (178)
46 cd08885 RHO_alpha_C_1 C-termin 99.5 4.5E-13 9.8E-18 125.0 12.1 166 238-432 4-188 (190)
47 cd08883 RHO_alpha_C_CMO-like C 99.4 1.3E-12 2.9E-17 120.6 14.0 160 238-432 4-173 (175)
48 cd08886 RHO_alpha_C_2 C-termin 99.4 1.6E-12 3.5E-17 121.0 12.4 161 238-431 4-181 (182)
49 cd08887 RHO_alpha_C_3 C-termin 99.4 1.3E-12 2.8E-17 121.1 10.1 165 238-432 4-183 (185)
50 cd08884 RHO_alpha_C_GbcA-like 99.4 7.6E-12 1.7E-16 118.6 12.5 164 238-432 14-203 (205)
51 TIGR01416 Rieske_proteo ubiqui 99.3 5.1E-12 1.1E-16 116.6 10.7 96 93-203 40-169 (174)
52 PF00848 Ring_hydroxyl_A: Ring 99.3 3.6E-12 7.8E-17 118.6 8.3 165 240-432 12-206 (209)
53 PF08417 PaO: Pheophorbide a o 99.3 4.7E-12 1E-16 104.9 7.6 86 302-397 1-86 (92)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.9 6.6E-09 1.4E-13 94.8 10.4 66 126-206 74-158 (171)
55 cd08882 RHO_alpha_C_MupW-like 98.8 3.8E-08 8.1E-13 95.9 12.4 109 300-432 129-241 (243)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.7 9.2E-08 2E-12 91.9 12.2 174 240-432 6-220 (222)
57 PF11723 Aromatic_hydrox: Homo 98.6 1.5E-06 3.3E-11 82.4 14.3 188 224-435 14-238 (240)
58 COG0723 QcrA Rieske Fe-S prote 98.3 1.2E-06 2.5E-11 81.3 6.7 80 115-210 83-169 (177)
59 cd08881 RHO_alpha_C_NDO-like C 98.2 3.7E-06 8E-11 79.9 7.7 136 239-395 10-156 (206)
60 cd08879 RHO_alpha_C_AntDO-like 98.1 4E-06 8.6E-11 81.4 6.5 30 239-268 5-34 (237)
61 KOG1671 Ubiquinol cytochrome c 98.0 9.6E-06 2.1E-10 74.7 5.1 75 99-175 91-191 (210)
62 TIGR03171 soxL2 Rieske iron-su 97.9 2.6E-05 5.7E-10 77.4 7.4 67 126-206 175-275 (321)
63 KOG1336 Monodehydroascorbate/f 95.9 0.0037 8.1E-08 65.4 2.1 39 138-177 1-40 (478)
64 PF09740 DUF2043: Uncharacteri 62.1 4.7 0.0001 34.4 1.6 36 127-165 63-99 (110)
65 COG1645 Uncharacterized Zn-fin 41.2 16 0.00035 32.2 1.6 30 132-165 27-56 (131)
66 PF10080 DUF2318: Predicted me 29.7 2.6E+02 0.0055 23.6 7.0 59 103-165 2-64 (102)
67 PF11572 DUF3234: Protein of u 28.3 14 0.00031 30.3 -0.7 50 90-144 5-54 (103)
68 PF12266 DUF3613: Protein of u 27.7 61 0.0013 25.2 2.6 30 413-442 35-64 (67)
69 COG4391 Uncharacterized protei 26.2 82 0.0018 24.0 3.0 18 149-166 44-61 (62)
70 PF05265 DUF723: Protein of un 22.6 46 0.00099 25.3 1.1 15 152-166 31-45 (60)
71 PF14446 Prok-RING_1: Prokaryo 22.5 37 0.00079 25.3 0.5 23 151-173 19-46 (54)
72 PRK00420 hypothetical protein; 21.5 74 0.0016 27.3 2.3 31 132-165 22-52 (112)
73 PF14920 MTBP_C: MDM2-binding 21.2 39 0.00084 32.7 0.6 16 152-167 15-30 (251)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=1.7e-78 Score=640.43 Aligned_cols=451 Identities=80% Similarity=1.355 Sum_probs=361.8
Q ss_pred Ccccccccc---eeccCCCccccccccCCCCcccccccccccccCCCcceecCCCCCCCCCccccccCCccccCCCccCc
Q 012708 1 MALLLSTTA---NITTSPRKTLPFLATGTPKRQITVKSLQKRSKNLSPLRVAAPPSDPAASDEETMRKDEKEDYGSLVDD 77 (458)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 77 (458)
||+++++++ ++|.+..++.+|+.+-+ .++.++.....+++..++++|+++|++++....+....++. -.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 74 (539)
T PLN02518 1 MAVLLGIACNSLTLTSSTPKSTPFFIPAR-TIPFVSSSRPRRGKIFTPLRVAAPPSVPSEAALQQDEGEEQ-----RVEQ 74 (539)
T ss_pred CceeeeccccchhhccCCCCCcceeeecc-eeccccccccccccccccceecCCCCCCccccccCCccccc-----cccc
Confidence 666655444 66777778888887644 55666666566667778899999988665422111111110 0112
Q ss_pred cccccccccccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcC
Q 012708 78 EYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCS 157 (458)
Q Consensus 78 ~~~~~e~~~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~Cp 157 (458)
+....+.+.+|+|++.||+||.++||++|+++.++++|++|||||++.+|+++||+|+|||||++|+.|++++++.|+||
T Consensus 75 ~~~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~Cp 154 (539)
T PLN02518 75 ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCS 154 (539)
T ss_pred cccccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcC
Confidence 33333445679999999999999999889999999999999999973489999999999999999999999657899999
Q ss_pred CCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceEE
Q 012708 158 YHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVT 237 (458)
Q Consensus 158 yHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~ 237 (458)
||||+||++|+|+.||+.+..++..++..+++.++++|||+|++|+||||+++++.+.++...+|.+++++++++|..+.
T Consensus 155 YHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~~ 234 (539)
T PLN02518 155 YHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVT 234 (539)
T ss_pred CCCCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeEE
Confidence 99999999999999998654433322224567799999999999999999987643334455667676578888888777
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEEeecCccceeeecCCCCcEEEEEEcceeeeEEEEEccc
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDTK 317 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~f~~P~~~~~~~~~~~~ 317 (458)
...+++++|++++||++|++|++|+|++++|.++...+.+++++..+.+||.+....+..+...|.+||++.+.+.+..+
T Consensus 235 ~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~ 314 (539)
T PLN02518 235 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTK 314 (539)
T ss_pred EEEEEecCchhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeecc
Confidence 77899999999999999999999999999999888877788888776778875433344456889999998877666544
Q ss_pred CcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHhhhhHHHhhhc
Q 012708 318 LPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKL 397 (458)
Q Consensus 318 ~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~ 397 (458)
.+..++....+++++++||+++++||+||+++|||+.+..+...|++++|+|+.|+.+++|++||+.+||+||+.+...+
T Consensus 315 ~~~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~ 394 (539)
T PLN02518 315 LPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKS 394 (539)
T ss_pred ccCCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHHHhhhccchHhHHHHHHHHHHHHhhcc
Confidence 43335555567788899999999999999999999888777777889999999999999999999999999999998877
Q ss_pred ccCCccccccccccccccCcccHHHHHHHHHHHHhcCCCCCCCCCC-CCCCCCCccccccc
Q 012708 398 MEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQPEWFGFS-SQQPSPSTVLSKYA 457 (458)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~~~p~w~~~~-~~~~~p~~~~~~~~ 457 (458)
.+.+.+++++|++.+|+|+++|+.+++|||||+++|.++|.|++.. .+++||+++|||||
T Consensus 395 ~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~~~ 455 (539)
T PLN02518 395 GEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQ 455 (539)
T ss_pred ccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCHHH
Confidence 6656688999999999999999999999999999999999999844 34578998889987
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=6.2e-52 Score=431.18 Aligned_cols=304 Identities=23% Similarity=0.461 Sum_probs=228.0
Q ss_pred ccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCC
Q 012708 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (458)
Q Consensus 89 ~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~ 168 (458)
.|++.||+||.++||++|+++.++++|++|||||+ .+|+++|++|+|||||++|+.|++. ++.|+||||||+||.+|+
T Consensus 216 ~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~-~dG~v~A~~D~CPHRgaPLs~G~v~-g~~L~CPYHGW~FD~dG~ 293 (536)
T PLN02281 216 HLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRG-EDGKPGCVRNTCAHRACPLDLGTVN-EGRIQCPYHGWEYSTDGE 293 (536)
T ss_pred hhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEEC-CCCeEEEEeCcCcCCCCccccceee-CCEEEeCCCCCEECCCCC
Confidence 56899999999999988999999999999999998 8999999999999999999999996 789999999999999999
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCC-CCceEE-EEEEEecCh
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKP-EFSSVT-IQRDLFYGY 246 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~-~~~~~~-~~~~~~~nw 246 (458)
|+.+|+.. +.+.++++|||+|++|+||||+++++ +.|.+| +++++ +|.... ..++++|||
T Consensus 294 cv~iP~~~----------~~~~~l~sYPV~e~~GlVwV~lgd~~-------~aP~~p-~ld~p~~~~~~~~~~~~~~~nw 355 (536)
T PLN02281 294 CKKMPSTK----------LLKVKIKSLPCLEQEGMIWIWPGDEP-------PAPILP-SLQPPSGFLIHAELVMDLPVEH 355 (536)
T ss_pred EeeCCCCc----------cccCCcceEeEEEECCEEEEEeCCCC-------CCCCCc-cccCcccceEEEEEEEEecCCH
Confidence 99999763 23568999999999999999998643 124456 66665 554433 367899999
Q ss_pred hhhhhhccCCCcccccccccccCcCCCCCccEEEeecCccceeeecCCCCcEEEEEEcceeeeEEEEEcc-cCc-c--cC
Q 012708 247 DTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDT-KLP-V--VG 322 (458)
Q Consensus 247 k~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~f~~P~~~~~~~~~~~-~~p-~--~g 322 (458)
++++||++|.||++|+|++++|..... +...+.... ..++.+..... ...++|.+||++...+.+.. +.. . ..
T Consensus 356 kllvENllD~~H~~fvH~~t~g~~~~~-p~~v~~~~~-~~~~~p~~~~~-pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~ 432 (536)
T PLN02281 356 GLLLDNLLDLAHAPFTHTSTFAKGWSV-PSLVKFLTP-TSGLQGYWDPY-PIDMEFKPPCIVLSTIGISKPGKLEGKSTQ 432 (536)
T ss_pred HHHHHhccccccccccCcccccCcccC-CceeEEecc-cCCCCcccccC-CceEEEECcEEEEEeeccccCCcccccccc
Confidence 999999999999999999999874322 222222211 11121111111 23588999999887665531 110 0 01
Q ss_pred CCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCc
Q 012708 323 DQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSE 402 (458)
Q Consensus 323 ~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~ 402 (458)
.....++.++.+||+++++||+||.+.|||... ..+.+| ...|+.+ +.+.||+||+.|+|.||+.+....
T Consensus 433 ~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~-~~d~~~---~~~~l~~-~~~~vF~ED~~iLEaQQ~~i~~~~----- 502 (536)
T PLN02281 433 QCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPI-LKNLPF---MEHLWRH-FAEQVLNEDLRLVLGQQERMLNGA----- 502 (536)
T ss_pred ccccceEEEEEEEECCCCeEEEEEEecccCccc-cccccc---hHHHHHH-HhhHhhHhHHHHHHHHHHHhhccc-----
Confidence 112234556677999999999999999999542 111222 2332322 356899999999999999886532
Q ss_pred cccccccccccccCcccHHHHHHHHHHHHh
Q 012708 403 DVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 403 ~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
+..++++++|+++++|||||++.
T Consensus 503 -------~~~~l~l~aD~~~v~~RRWl~~~ 525 (536)
T PLN02281 503 -------NIWNLPVAYDKLGVRYRLWRNAV 525 (536)
T ss_pred -------ccccccchhhHHHHHHHHHHHHh
Confidence 23467899999999999999987
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=4.8e-44 Score=357.81 Aligned_cols=281 Identities=23% Similarity=0.401 Sum_probs=203.5
Q ss_pred cCCceEEeeecCCC-CCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCC
Q 012708 90 WRDHWYPVSLVEDL-DPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (458)
Q Consensus 90 ~~~~W~~v~~~~dL-~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~ 168 (458)
.++.||+||.++|| ++|+++.++++|++|||||+ .+|+++|++|.|||||++|+.|+++ ++.|+||||||+||.+|+
T Consensus 69 ~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd-~dGqv~Af~N~CPHRGapLSeG~v~-~g~L~CPYHGW~FD~~G~ 146 (394)
T PLN00095 69 ARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRD-ADGEAGCIKDECAHRACPLSLGKLV-DGKAQCPYHGWEYETGGE 146 (394)
T ss_pred hhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEEC-CCCCEEEEeccCCCCCCccccCccc-CCEEEecCCCcEECCCCC
Confidence 37899999999999 57999999999999999999 8999999999999999999999995 789999999999999999
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccc-----------cc----cCCCCCCCCCCCCCCC
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQER-----------AN----ATKPPMLPDAFDKPEF 233 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~-----------~~----~~~~p~~p~~~~~~~~ 233 (458)
|+.+|+.... ..+.++++|||++++|+||||+++..... .+ ...++.++ +. .+|
T Consensus 147 C~~iP~~~~~--------~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~-~~--~gf 215 (394)
T PLN00095 147 CAKMPSCKKF--------LKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFA-PG--EGF 215 (394)
T ss_pred EeeCCCcccc--------ccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccC-CC--CCc
Confidence 9999976432 23568999999999999999998643210 00 11222233 22 256
Q ss_pred ceEE-EEEEEecChhhhhhhccCCCc-cccccccccc----CcCCCCCccEEEeecCccceeeecCCCCcEEEEEEccee
Q 012708 234 SSVT-IQRDLFYGYDTLMENVSDPSH-IDFAHHKVTG----RRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCY 307 (458)
Q Consensus 234 ~~~~-~~~~~~~nwk~~~EN~~D~~H-~~~vH~~~~~----~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~f~~P~~ 307 (458)
.... ..++++|.|.++|||+||++| .+|+|+.++. ++..+.+.+.++......++.+.++. ..+..+|.+||+
T Consensus 216 ~~~aev~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~-~p~~~~F~ppc~ 294 (394)
T PLN00095 216 TPMAEVIADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDA-VPQSATFKPACV 294 (394)
T ss_pred eEEEEEEEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeeccc-CCcceeEcCcee
Confidence 6543 357999999999999999999 5888887663 44443333333322323455554443 556788999999
Q ss_pred eeEEEEEcccCcccCC-CcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHH
Q 012708 308 YMNKIEIDTKLPVVGD-QKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVL 386 (458)
Q Consensus 308 ~~~~~~~~~~~p~~g~-~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vl 386 (458)
+.++|.+..+ |-.+. ..+++..+++..|.++++||++++++++|.. +| .|.+.++..+=..+.++|+.||..++
T Consensus 295 ~~s~i~l~~~-~g~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~--~~--~~~~~~~~~~w~~~a~~vl~e~l~~v 369 (394)
T PLN00095 295 IASTIALEDG-PGGGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVA--VP--EGAQAAAGDVWANLAMMVLKEELEDV 369 (394)
T ss_pred eeeeeccccc-CCCCccccceeeeEEEEEecCCCceEEEEeecccccc--cH--HHhHhchHHHHHHHHHHHHHHHHHHH
Confidence 9998877421 10011 1345555566799999999999999999842 11 12222322111114678888998777
Q ss_pred hhh
Q 012708 387 QGQ 389 (458)
Q Consensus 387 e~q 389 (458)
.+-
T Consensus 370 ~~~ 372 (394)
T PLN00095 370 RAA 372 (394)
T ss_pred hcc
Confidence 643
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.9e-44 Score=368.95 Aligned_cols=330 Identities=24% Similarity=0.363 Sum_probs=227.6
Q ss_pred cccCCCccCccccccccccccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCcc
Q 012708 68 KEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGR 147 (458)
Q Consensus 68 ~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~ 147 (458)
.++...|+|+++++.|.+. ++.++||+||++++|+++++++++++|++|||||+ .+|+|+||+|.|||||++||.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~-~dg~~~al~d~C~HRga~Ls~g~ 80 (367)
T COG4638 4 RLPPPFYTDPELFQLELER--IFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRD-KDGQVHALADVCPHRGARLSEGR 80 (367)
T ss_pred cCCCccccCHHHHHHHHHH--hhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEEC-CCCCEEEEeccCCCCCchhcccc
Confidence 5788899999999999765 55679999999999998899999999999999999 99999999999999999999999
Q ss_pred ccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCC
Q 012708 148 IDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDA 227 (458)
Q Consensus 148 ~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~ 227 (458)
+++.+.|+||||||+||++|+|+.+|+....... ++++.++.+|||++++|+||||+++++.+ .+..++|..+.+
T Consensus 81 ~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~----~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~-~~~~~~p~~~~~ 155 (367)
T COG4638 81 VGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDF----DKSEHGLKRYPVEERYGFIWIWLGDPPPA-AEAFLPPAEPYE 155 (367)
T ss_pred CCCCceEecCCCceEECCCCcEecCCccccCCCC----CHhhCCccccceEEEccEEEEecCCCccC-hhHhcccccccc
Confidence 9744899999999999999999999953211111 22456899999999999999999988754 344555544422
Q ss_pred CCCCCCceEEEEEEEecChhhhhhhccC-CCcccccccccccCcCCCCCccEEEeecCccc-------------------
Q 012708 228 FDKPEFSSVTIQRDLFYGYDTLMENVSD-PSHIDFAHHKVTGRRDRAKPLPFKLESSGHWG------------------- 287 (458)
Q Consensus 228 ~~~~~~~~~~~~~~~~~nwk~~~EN~~D-~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~g------------------- 287 (458)
.++............++|||.++||++| +||++++|+++++.........+.+.....+.
T Consensus 156 ~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~ 235 (367)
T COG4638 156 DDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQPLGSEASS 235 (367)
T ss_pred cccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccCCcchhhhc
Confidence 2222222223456788999999998888 99999999998875443221111111111000
Q ss_pred --eeeec-CCCCcEEEEEEccee-eeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccc
Q 012708 288 --FAGAN-DGNPRISAKFVAPCY-YMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWW 363 (458)
Q Consensus 288 --f~~~~-~~~~~~~~~f~~P~~-~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~ 363 (458)
+.+.. .........++.|+. ..+.. ... ..+..+++|+++++|.+.......... ..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---------~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~--- 298 (367)
T COG4638 236 YGFDGNYEVHVPGAYLLFLYPNSTVWNHV---------TVD---DVIVFFVQPIDEDETMVTLVWLVLPDL--VEGV--- 298 (367)
T ss_pred cccccccccccCceeEEEEcCCchheeee---------ccc---ceeEEEEEecCCceeEEEeeeeeccch--hhHH---
Confidence 10000 001223456677763 22221 111 234456799999999988753211110 1111
Q ss_pred cchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHhcC
Q 012708 364 QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGN 434 (458)
Q Consensus 364 ~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~ 434 (458)
+.+..++.+ +.+.+++||..|+|.||+...+...+ .+ ..+...|...+++++|+.+...
T Consensus 299 ~~~~~~~~~-~~~~~~~qD~~i~e~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~ 357 (367)
T COG4638 299 DYFDKLIRR-FRQEILDQDREILENQQPGRLSPALE----------RG-PYPIREDAGSVQFRRWLAERLV 357 (367)
T ss_pred HHHHHHHHH-HhccCcHHHHHHHHHHhccccccccc----------CC-CccccccchhhHHHHHHHHHHh
Confidence 112222222 35679999999999999866554332 12 3456789999999999977643
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=3.5e-39 Score=334.89 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=159.8
Q ss_pred ccCCccccCCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCC
Q 012708 63 MRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA 141 (458)
Q Consensus 63 ~~~~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga 141 (458)
..+..+||.++|+|+++|+.|++. +|.+.|+.||++++|+ +|+++++.++|++|||+|+ .+|+|+||.|+|||||+
T Consensus 10 ~~~~~~~~~~~Ytd~~~f~~E~~~--IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~-~dG~i~af~N~C~HRga 86 (433)
T TIGR03229 10 EKGIFRCKREMFTDPELFDLEMKH--IFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARN-KDGELNAFINACSHRGA 86 (433)
T ss_pred ccCCccCChhhcCCHHHHHHHHHH--HhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCcEEEEeCcCCCCCC
Confidence 445568999999999999999876 6689999999999998 4899999999999999999 89999999999999999
Q ss_pred CcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCCC--CCcchhhcCC-CCCCceeEe-EEEECCeEEEecCCCcccccc
Q 012708 142 PLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAS--EGPEARAIQS-PRACATRFP-TMVSQGLLFVWPDEYGQERAN 217 (458)
Q Consensus 142 ~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~--~~~~~~~~~~-~~~~l~~~p-v~e~~G~V~V~~~~~~~~~~~ 217 (458)
+|+.|..++.+.|+||||||+||.+|+|+.+|.... ++.. ++. ...+|..++ |+.++|+|||++++++++ ++
T Consensus 87 ~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~---fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~-l~ 162 (433)
T TIGR03229 87 MLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPEC---FNKDGSHDLKKVARFESYRGFLFGSLNPDVLP-LE 162 (433)
T ss_pred CcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccc---cCcHhhcCCccceEEEEECCEEEEEcCCCCCC-HH
Confidence 999987755679999999999999999999997432 2211 122 356899996 677799999999988754 45
Q ss_pred cCCCCCCCCCCC---C---CCCceEE--EEEEEecChhhhhhhccCCCccccccccccc
Q 012708 218 ATKPPMLPDAFD---K---PEFSSVT--IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG 268 (458)
Q Consensus 218 ~~~~p~~p~~~~---~---~~~~~~~--~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 268 (458)
+++.+. .+.++ + .++..+. ..+.++||||+++||++|+||++++|.++..
T Consensus 163 e~Lg~~-~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 163 EHLGET-AKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred HHhhhH-HHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 555542 21221 1 2333332 3578899999999999999999999988753
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=3.1e-39 Score=335.05 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=160.1
Q ss_pred ccCCccccCCCccCccccccccccccccCCceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCC
Q 012708 63 MRKDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA 141 (458)
Q Consensus 63 ~~~~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga 141 (458)
..+..+|+.+.|+|+++|++|++. +|.+.|++||++++|++ |+++++.+++++|||+|+ .+|+|+||.|+|||||+
T Consensus 10 ~~~~~~v~~~~ytd~~if~~E~~~--IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~-~dG~i~a~~N~C~HRGa 86 (438)
T TIGR03228 10 NDGVFRIARDMFTEPELFDLEMEL--IFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRD-GKGELHALVNACQHRGA 86 (438)
T ss_pred ccCceecChheECCHHHHHHHHHH--HHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcccCCCCCC
Confidence 344558999999999999999876 56899999999999985 999999999999999999 89999999999999999
Q ss_pred CcCC-ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCC
Q 012708 142 PLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATK 220 (458)
Q Consensus 142 ~L~~-G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~ 220 (458)
+|+. +.. +...|+||||||+||.||+|+.||......+. ++....+|..++|.+++|+||+++++++.+.+++++
T Consensus 87 ~L~~~~~G-n~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~---fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~l 162 (438)
T TIGR03228 87 TLTRVGKG-NQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEG---FDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFL 162 (438)
T ss_pred ccccCCcc-ccCEEEcCCCCCcccCCCceeecCcccccCCC---CChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHh
Confidence 9997 444 46789999999999999999999965433221 234577898999999999999999987532345555
Q ss_pred CCCCC--CCCC----CCCCceEE--EEEEEecChhhhhhhccCCCccccccccccc
Q 012708 221 PPMLP--DAFD----KPEFSSVT--IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG 268 (458)
Q Consensus 221 ~p~~p--~~~~----~~~~~~~~--~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 268 (458)
.+... +.+. ..++..+. ..+.++||||+++||++|+||++++|.++++
T Consensus 163 g~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 163 GDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred hhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 44211 0111 11243332 2568899999999999999999999998753
No 7
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=100.00 E-value=1.8e-33 Score=253.51 Aligned_cols=142 Identities=18% Similarity=0.305 Sum_probs=123.0
Q ss_pred cccCCCccCccccccccccccccC-CceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCC
Q 012708 68 KEDYGSLVDDEYGKESSDSKFSWR-DHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (458)
Q Consensus 68 ~~~~~~y~~~~~~~~e~~~~~~~~-~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~ 145 (458)
+||.++|+|+++++.|++. +|+ +.|+.||++++|+ +|+++.+.++|++|+|+|+ .+|+++|+.|+|||||++|+.
T Consensus 1 ~~~~~~y~d~~~~~~E~~~--if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~-~~g~v~A~~n~CpHrg~~L~~ 77 (150)
T cd03545 1 RVPYKVFTDRAYFDREQER--IFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRA-EDGSLHAWVNRCAHRGALVCR 77 (150)
T ss_pred CCChhhccCHHHHHHHHHh--hhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEcccCcCCCCEecc
Confidence 4789999999999999866 777 9999999999998 5999999999999999998 799999999999999999999
Q ss_pred ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCc---chhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGP---EARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 146 G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~---~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|..+.++.|+||||||+||++|+|+.+|......+ ....+.+...+|++|+|.+++|+|||++++++
T Consensus 78 g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~ 147 (150)
T cd03545 78 ERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEV 147 (150)
T ss_pred cccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCC
Confidence 86544679999999999999999999997654311 00112355678999999999999999999765
No 8
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=1.1e-31 Score=237.68 Aligned_cols=120 Identities=36% Similarity=0.881 Sum_probs=107.4
Q ss_pred cccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC
Q 012708 86 SKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (458)
Q Consensus 86 ~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~ 165 (458)
.+++|++.|++||.++||++|..+.++++|++|+|+|+ .+|+++||+|+|||||++|+.|.+. ++.|+||||||+||.
T Consensus 10 ~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~-~~G~v~A~~n~CpHrga~L~~G~~~-~~~i~CP~Hgw~Fd~ 87 (134)
T cd04338 10 AEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRD-QNGQLRCLEDRCPHRLAKLSEGQLI-DGKLECLYHGWQFGG 87 (134)
T ss_pred cccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEc-CCCCEEEEcCcCCCCcCcccCCeec-CCEEEccCCCCEECC
Confidence 46789999999999999998889999999999999998 7999999999999999999999985 789999999999999
Q ss_pred CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 166 ~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+|+|+.+|..+.... .+...+|++|+|++++|+|||++++..
T Consensus 88 ~G~~~~~P~~~~~~~-----~~~~~~l~~y~v~~~~G~V~V~~~~~~ 129 (134)
T cd04338 88 EGKCVKIPQLPADAK-----IPKNACVKSYEVRDSQGVVWMWMSEAT 129 (134)
T ss_pred CCCEEECCCCCccCC-----CCcccCcceEeEEEECCEEEEEcCCCC
Confidence 999999997653221 134567999999999999999998754
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=5.7e-31 Score=229.13 Aligned_cols=117 Identities=29% Similarity=0.610 Sum_probs=101.9
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeee
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTR 171 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~ 171 (458)
+.||+|+.+++|+ ++++.++++|++|||||+ .+|+++|++|+|||||++|+.|.+. ++.|+||||||+||.+|+|+.
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~-~~g~v~a~~n~CpHrg~~Ls~G~v~-~~~l~CpyHGw~Fd~~G~~~~ 78 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRG-ATGRAVVMDRHCSHLGANLADGRVK-DGCIQCPFHHWRYDEQGQCVH 78 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEc-cCCEEEEEcCCCCCCCCCccCCEEe-CCEEECCCCCCEECCCCCEEE
Confidence 5799999999996 789999999999999998 8999999999999999999999996 789999999999999999999
Q ss_pred cCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
||+.+...+.... .+...++++|||+|++|+||||++++.
T Consensus 79 iP~~~~~~~~~~~-~p~~~~~~~~pv~e~~G~Vwv~~g~~~ 118 (123)
T cd03537 79 IPGHSTAVRRLEP-VPRGARQPTLVTAERYGYVWVWYGSPQ 118 (123)
T ss_pred CCCCccccccccc-CCcccccccEeEEEECCEEEEEcCCCC
Confidence 9986542111100 245678999999999999999998653
No 10
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=1e-30 Score=232.60 Aligned_cols=123 Identities=69% Similarity=1.351 Sum_probs=108.8
Q ss_pred cccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECC-CCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEc
Q 012708 86 SKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN-SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164 (458)
Q Consensus 86 ~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~-~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd 164 (458)
.++.|++.|++||.++||++|+++.++++|++|+|+|+ . +|+++|++|+|||||++|+.|.+..++.|+||||||+||
T Consensus 10 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd 88 (138)
T cd03480 10 DKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWD-RNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFD 88 (138)
T ss_pred ccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEE-CCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEEC
Confidence 35788999999999999999999999999999999998 6 999999999999999999999885457999999999999
Q ss_pred CCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 165 GCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 165 ~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
.+|+|+.+|+....+.. ..+...+|++|||++++|+|||+++++.
T Consensus 89 ~tG~~~~~P~~~~~g~~---~~~~~~~l~~ypv~v~~g~V~V~~~~~~ 133 (138)
T cd03480 89 GSGSCQRIPQAAEGGKA---HTSPRACVASLPTAVRQGLLFVWPGEPE 133 (138)
T ss_pred CCCCEEECCCCcccccc---CCCcccccceEeEEEECCEEEEecCChH
Confidence 99999999986554321 1234678999999999999999998754
No 11
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.97 E-value=3.1e-31 Score=237.99 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=117.6
Q ss_pred CCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCcc-c
Q 012708 71 YGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGR-I 148 (458)
Q Consensus 71 ~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~-~ 148 (458)
.++|+|+++++.|++. +|.+.|+.||++++|+ +|+++.+.++|++|+|+|+ .+|+++|+.|+|||||++|+.+. .
T Consensus 2 ~~~y~~~~~~~~e~~~--i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~-~~g~v~A~~n~CpHrg~~L~~~~~g 78 (146)
T cd03538 2 KDVYTDPEIFALEMER--LFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRH-TDGSVHVLYNRCPHKGTKIVSDGCG 78 (146)
T ss_pred CceEcCHHHHHHHHHH--HhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEEC-CCCCEEEEeccCcCCCCEeeccccc
Confidence 5789999999999876 6699999999999998 6999999999999999998 79999999999999999997554 3
Q ss_pred cCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeE-eEEEECCeEEEecCCCc
Q 012708 149 DENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRF-PTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 149 ~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~-pv~e~~G~V~V~~~~~~ 212 (458)
..++.|+||||||+||.||+|+.+|....+............+|..+ .|++++|+|||++++++
T Consensus 79 ~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~ 143 (146)
T cd03538 79 NTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSG 143 (146)
T ss_pred ccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCC
Confidence 22457999999999999999999998765431100001246789999 79999999999999865
No 12
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.97 E-value=7.2e-30 Score=220.31 Aligned_cols=111 Identities=31% Similarity=0.657 Sum_probs=102.0
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeec
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~i 172 (458)
.|+.||.++||++|+++.++++|++|+|+|+ .+|+++|++|+|||||++|+.|.+. ++.|+||||||+||++|+|+.+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~-~~g~~~a~~n~CpH~ga~L~~G~~~-~~~i~CP~Hg~~fd~~G~~~~~ 78 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFAD-SDGALNVLDAYCRHMGGDLSQGTVK-GDEIACPFHDWRWGGDGRCKAI 78 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcCcCCCCCCCCccCccc-CCEEECCCCCCEECCCCCEEEC
Confidence 5999999999999999999999999999998 7999999999999999999999995 7899999999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcc
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQ 213 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~ 213 (458)
|+.... +...++++|||++++|+|||++++++.
T Consensus 79 p~~~~~--------p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 79 PYARRV--------PPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred CcccCC--------CcccccceEeEEEECCEEEEECCCCCC
Confidence 976432 345679999999999999999998763
No 13
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=1.2e-29 Score=223.21 Aligned_cols=114 Identities=35% Similarity=0.806 Sum_probs=103.5
Q ss_pred ccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCC
Q 012708 87 KFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 166 (458)
Q Consensus 87 ~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~ 166 (458)
...+++.|++||.+++|++|+++.++++|++++|+|+ .+|+++|++|+|||||++|+.|.+. ++.|+||||||+||.+
T Consensus 11 ~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~-~~g~v~A~~n~CpH~g~~L~~G~~~-~~~i~CP~Hgw~Fd~t 88 (129)
T cd04337 11 EPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRD-EDGTPGCIRDECAHRACPLSLGKVI-EGRIQCPYHGWEYDGD 88 (129)
T ss_pred cchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEEC-CCCcEEEEeCcCCCCcCCcccCcEe-CCEEEeCCCCCEECCC
Confidence 3467999999999999999999999999999999998 7999999999999999999999985 7899999999999999
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|+|+.+|... +...+|++|||++++|+||||++++.
T Consensus 89 G~~~~~P~~~----------~~~~~l~~y~v~v~~g~V~V~~~~~~ 124 (129)
T cd04337 89 GECTKMPSTK----------CLNVGIAALPCMEQDGMIWVWPGDDP 124 (129)
T ss_pred CCEEeCCcCC----------CccCCcceEeEEEECCEEEEEcCCCC
Confidence 9999998643 13457999999999999999997643
No 14
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=1.4e-29 Score=226.86 Aligned_cols=117 Identities=32% Similarity=0.646 Sum_probs=105.0
Q ss_pred cccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCC
Q 012708 88 FSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 166 (458)
Q Consensus 88 ~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~ 166 (458)
.++++.|++||.+++|+ +|+++.+.++|++|+|+|+ .+|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+
T Consensus 16 ~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~-~~G~v~A~~n~CpHrG~~L~~G~~~-~~~i~CP~Hgw~F~~~ 93 (144)
T cd03479 16 ELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRD-TSGRVGLLDEHCPHRGASLVFGRVE-ECGLRCCYHGWKFDVD 93 (144)
T ss_pred hHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEe-CCCCEEEEcCcCCCCCCcccCCccc-CCEEEccCCCcEECCC
Confidence 36789999999999999 6999999999999999998 8999999999999999999999985 7899999999999999
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCC
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~ 211 (458)
|+|+.+|+.+..... +...+|++|+|++++|+|||++++.
T Consensus 94 G~~~~~P~~~~~~~~-----~~~~~l~~~~v~~~~G~I~V~~~~~ 133 (144)
T cd03479 94 GQCLEMPSEPPDSQL-----KQKVRQPAYPVRERGGLVWAYMGPA 133 (144)
T ss_pred CCEEECCCCccccCC-----ccccCcceEeEEEECCEEEEECCCC
Confidence 999999976543211 3566899999999999999999864
No 15
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.96 E-value=2.2e-29 Score=221.47 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=102.0
Q ss_pred eEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeec
Q 012708 94 WYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~i 172 (458)
|++||+++||+ +|+++++.+++++|+|+|+ .+|+++||.|+|||||++|+.|.+++.+.|+||||||+||++|+|+.+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~-~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~ 79 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRD-PDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGV 79 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEEC-CCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeec
Confidence 99999999998 4999999999999999998 899999999999999999999887545689999999999999999999
Q ss_pred CCCCCCCc-------chhhcCCCCCCceeEeEEEECCeEEEecCCCcc
Q 012708 173 PQAASEGP-------EARAIQSPRACATRFPTMVSQGLLFVWPDEYGQ 213 (458)
Q Consensus 173 P~~~~~~~-------~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~ 213 (458)
|....... ....+++.+.+|.+++|++++|+|||++++++.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 80 PFRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred cccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 98644210 001123456789999999999999999998753
No 16
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.96 E-value=4e-29 Score=216.03 Aligned_cols=112 Identities=34% Similarity=0.792 Sum_probs=102.4
Q ss_pred cCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCe
Q 012708 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSC 169 (458)
Q Consensus 90 ~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~ 169 (458)
+++.|++||.++||+ |+.+.+.++|++++|+|+ .+|+++|++|+|||||++|+.|.+. ++.|+||||||+||.+|+|
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~-~~g~~~a~~n~CpH~g~~L~~G~~~-~~~i~Cp~Hg~~fd~~G~~ 78 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRT-QDGRVAALEDRCPHRSAPLSKGSVE-GGGLVCGYHGLEFDSDGRC 78 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEEC-CCCCEEEeCCcCCCCCCCccCCccc-CCEEEeCCCCcEEcCCCCE
Confidence 578999999999998 999999999999999998 7999999999999999999999995 7899999999999999999
Q ss_pred eecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+.+|..... +...+|++|||++++|+|||+++++.
T Consensus 79 ~~~p~~~~~--------~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 79 VHMPGQERV--------PAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred EeCCCCCCC--------CCccccccCCEEEECCEEEEEcCCcc
Confidence 999976432 34678999999999999999998654
No 17
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.96 E-value=9.4e-29 Score=219.56 Aligned_cols=118 Identities=29% Similarity=0.582 Sum_probs=102.6
Q ss_pred ccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccc-cCCCeEEcCCCCeEEcC
Q 012708 87 KFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGWSFDG 165 (458)
Q Consensus 87 ~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~-~~~~~l~CpyHGw~Fd~ 165 (458)
++.|++.|++||++++|++|+++.++++|++|+|+|. +|+++|++|+|||||++|+.|.. .+++.|+||||||+||+
T Consensus 8 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~--~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl 85 (136)
T cd03548 8 KWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRV--DGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRL 85 (136)
T ss_pred ccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEec--CCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeC
Confidence 4577999999999999999999999999999999994 89999999999999999999863 24679999999999998
Q ss_pred -CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 166 -CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 166 -~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+|+|+.+|..+... .....+|++|||++++|+|||++++..
T Consensus 86 ~tG~~~~~~~~p~~~------~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 86 DDGKLVTILANPDDP------LIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred CCccEEEcccCCCcc------ccccCCCceEeEEEECCEEEEEeCCcc
Confidence 89999998654321 123568999999999999999998754
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.96 E-value=7.5e-29 Score=214.52 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=102.9
Q ss_pred ceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeee
Q 012708 93 HWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTR 171 (458)
Q Consensus 93 ~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~ 171 (458)
.|++||++++|++ |++++++++|++|+|+|+ .+|+++|+.|+|||||++|+.|.+. ++.|+||||||+||++|+|+.
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~-~dg~v~A~~n~C~Hrg~~L~~g~~~-~~~i~CP~Hgw~f~l~G~l~~ 78 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRD-GNGKLHAFHNVCTHRASILACGSGK-KSCFVCPYHGWVYGLDGSLTK 78 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCCEEEEeCCCCCCcCCccCCccc-cCEEEeCCCCCEEcCCCeEEe
Confidence 5999999999985 889999999999999998 8999999999999999999999885 679999999999999999999
Q ss_pred cCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCC
Q 012708 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (458)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~ 211 (458)
+|........ +....+|.+++|.+++|+|||+++++
T Consensus 79 ~P~~~~~~~~----~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 79 ATQATGIQNF----NPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CCCcccccCC----CHHHCCCceEeEEEECCEEEEEeCCC
Confidence 9987665432 45678899999999999999999875
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.96 E-value=6.1e-29 Score=218.33 Aligned_cols=121 Identities=14% Similarity=0.274 Sum_probs=104.2
Q ss_pred ccCCceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCC
Q 012708 89 SWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCG 167 (458)
Q Consensus 89 ~~~~~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G 167 (458)
+|.+.|+.||+++||++ |+.+.+.++|++|+|+|+ .+|+++|++|+|||||++|+.|..++++.|+||||||+||.+|
T Consensus 4 i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~-~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G 82 (128)
T cd03472 4 VFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQ-KDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAG 82 (128)
T ss_pred hhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCc
Confidence 56899999999999986 777888899999999998 7999999999999999999998875456899999999999999
Q ss_pred CeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 168 ~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+|+.+|..+...+. .+......|+.++|.+++|+|||++++++
T Consensus 83 ~~~~~P~~~~~~~~--~~~~~~~~l~~~~v~~~~g~vfv~~~~~~ 125 (128)
T cd03472 83 NLVNVPFEKEAFCD--GLDKADWGPLQARVETYKGLIFANWDAEA 125 (128)
T ss_pred CEEeccCccccccc--CCCHHHCCCcceeEeEECCEEEEEcCCCC
Confidence 99999986542110 12345567999999999999999999875
No 20
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.95 E-value=1.7e-27 Score=207.89 Aligned_cols=118 Identities=16% Similarity=0.315 Sum_probs=100.0
Q ss_pred CceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCee
Q 012708 92 DHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCT 170 (458)
Q Consensus 92 ~~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~ 170 (458)
+.|+.||+++||++ |+...+.++|++|+|+|+ .+|+++|+.|+|||||++|+.|.+++.+.|+||||||+||.+|+|+
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~-~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~ 79 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRD-EDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLV 79 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEEC-CCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEe
Confidence 47999999999986 778888899999999998 7999999999999999999999886446899999999999999999
Q ss_pred ecCCCCCCCcchhhcCCCCCCceeEeE-EEECCeEEEecCCCc
Q 012708 171 RIPQAASEGPEARAIQSPRACATRFPT-MVSQGLLFVWPDEYG 212 (458)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv-~e~~G~V~V~~~~~~ 212 (458)
.+|......+. .+.....+|++|++ ++++|+|||++++++
T Consensus 80 ~~p~~~~~~~~--~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~ 120 (123)
T cd03535 80 GVPAQQEAYGG--GFDKSQWGLRPAPNLDSYNGLIFGSLDPKA 120 (123)
T ss_pred eCCCccccccc--CcCHHHCCCccceeEEEECCEEEEEeCCCC
Confidence 99976542111 12345678999985 558999999999764
No 21
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.95 E-value=1.7e-27 Score=207.87 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=100.5
Q ss_pred eEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeec
Q 012708 94 WYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~i 172 (458)
|+.||+++||++ |++..+.++|++|+|+|+ .+|+++|+.|+|||||++|+.|..++...|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~-~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~ 79 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARD-KDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGA 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEEC
Confidence 999999999997 778888999999999998 799999999999999999999877544679999999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcc
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQ 213 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~ 213 (458)
|........ +...+...+|++|+|++++|+|||++++++.
T Consensus 80 p~~~~~~~~-~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 80 PVEKECMHG-KMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred Ccccccccc-CCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 986442110 1113456789999999999999999998653
No 22
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.95 E-value=1.7e-27 Score=206.02 Aligned_cols=114 Identities=33% Similarity=0.548 Sum_probs=101.4
Q ss_pred eEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeec
Q 012708 94 WYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~i 172 (458)
|++||.+++|+ +|+.+.+.++|++++|+|+ .+|+++|+.|+|||+|++|+.|.+.+++.|+||||||+||++|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~-~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~ 79 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRD-RDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGV 79 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEEC-CCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeC
Confidence 99999999999 8999999999999999997 799999999999999999999988336899999999999999999999
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|...... ...+...+|++|+|++++|+|||+++++.
T Consensus 80 P~~~~~~----~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 80 PREEGFP----GFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred CcccccC----CCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 9765421 11245668999999999999999998764
No 23
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.93 E-value=6.5e-26 Score=197.74 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=97.7
Q ss_pred eEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeec
Q 012708 94 WYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~i 172 (458)
|+.||+++||++ |+++.+.+.|++|+|+|+ .+|+++|+.|.|||||++|+.|..++++.|+||||||+||.||+|+.+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~-~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~ 79 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRD-KDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKV 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEEC-CCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEEC
Confidence 899999999996 888999999999999998 799999999999999999999877555699999999999999999999
Q ss_pred CCCCC--CCcchhhcCCC-CCCceeEe-EEEECCeEEEecCCCc
Q 012708 173 PQAAS--EGPEARAIQSP-RACATRFP-TMVSQGLLFVWPDEYG 212 (458)
Q Consensus 173 P~~~~--~~~~~~~~~~~-~~~l~~~p-v~e~~G~V~V~~~~~~ 212 (458)
|.... ++.. +++. +.+|..++ +++++|+|||++++++
T Consensus 80 p~~~~~~y~~~---~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~ 120 (123)
T cd03542 80 KDPKTAGYPEG---FNCDGSHDLTKVARFESYRGFLFGSLNADV 120 (123)
T ss_pred CcccccCcCcc---cChhhcCCCccceeEEEECCEEEEEcCCCC
Confidence 96432 2211 2233 56899985 6677999999999765
No 24
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.92 E-value=4e-25 Score=184.92 Aligned_cols=97 Identities=30% Similarity=0.559 Sum_probs=89.2
Q ss_pred eEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeeec
Q 012708 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~i 172 (458)
|++||.++||++|+.+.+++.|++++|+|+ +|+++|++|+|||+|++|+.|.+. ++.|+||||||+||+ +|+|+..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~--~~~~~a~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~fd~~~G~~~~~ 77 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV--DGEFYATDDLCTHGDASLSEGYVE-GGVIECPLHGGRFDLRTGKALSL 77 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE--CCEEEEECCcCCCCCCCCCCCeEe-CCEEEeCCcCCEEECCCCcccCC
Confidence 999999999999999999999999999997 679999999999999999999875 679999999999999 9999987
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEe
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~ 207 (458)
|.. ..|++|+|++++|.|||.
T Consensus 78 p~~--------------~~L~~~~v~~~~g~v~v~ 98 (98)
T cd03528 78 PAT--------------EPLKTYPVKVEDGDVYVD 98 (98)
T ss_pred CCC--------------CCcceEeEEEECCEEEEC
Confidence 642 358999999999999983
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.92 E-value=7.2e-25 Score=183.60 Aligned_cols=97 Identities=27% Similarity=0.642 Sum_probs=87.5
Q ss_pred eEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeeec
Q 012708 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~i 172 (458)
|+.||.++||++|+.+.+.+.|++++|+|+ .+|+++|++|+|||+|++|+.|.+. ++.|+||||||+||+ +|.|..
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~~G~~~~- 77 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRT-ADDEVFALENRCPHKGGPLSEGIVH-GEYVTCPLHNWVIDLETGEAQG- 77 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEe-CCCCEEEEcCcCCCCCCCccCCEEc-CCEEECCCCCCEEECCCCCCCC-
Confidence 999999999999999999999999999998 6799999999999999999999985 789999999999999 677642
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEe
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~ 207 (458)
| +..+|++|||++++|.|||.
T Consensus 78 p--------------~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 78 P--------------DEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C--------------CCCccceEeEEEECCEEEEC
Confidence 2 12468999999999999984
No 26
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.92 E-value=1.4e-24 Score=185.08 Aligned_cols=102 Identities=27% Similarity=0.482 Sum_probs=90.2
Q ss_pred eEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCC-CCeeec
Q 012708 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~-G~~~~i 172 (458)
|+.||.++||++|+.+.+.+.|.+++|+|+ .+|+++|+.|+|||||++|+.|.+. ++.|+||||||+||++ |.|..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~-~~g~~~A~~n~CpH~g~~L~~g~~~-g~~i~CP~Hg~~Fdl~~G~~~~- 77 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAP-EGGEFRAFQGICPHQEIPLAEGGFD-GGVLTCRAHLWQFDADTGEGLN- 77 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEc-cCCeEEEEcCcCCCCCCCcccCccc-CCEEEeCCcCCEEECCCccccC-
Confidence 899999999999999999999999999998 8999999999999999999999974 6799999999999995 55442
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
| +..+|++|+|++++|.|||++++.+
T Consensus 78 ~--------------~~~~L~~~~v~v~~g~v~v~~~~~~ 103 (108)
T cd03474 78 P--------------RDCRLARYPVKVEGGDILVDTEGVL 103 (108)
T ss_pred C--------------CCCccceEeEEEECCEEEEeCCCcC
Confidence 2 2347999999999999999997543
No 27
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.92 E-value=1.5e-24 Score=183.49 Aligned_cols=98 Identities=21% Similarity=0.317 Sum_probs=87.6
Q ss_pred eEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCC-cCCcccc---CCCeEEcCCCCeEEcC-CCC
Q 012708 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAP-LSEGRID---ENGHLQCSYHGWSFDG-CGS 168 (458)
Q Consensus 94 W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~-L~~G~~~---~~~~l~CpyHGw~Fd~-~G~ 168 (458)
|++||.++||++|+.+.++++|++|+|+|. .+|+++|++|+|||+|++ |+.|.+. +++.|+||||||+||+ +|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRL-PGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEe-CCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCC
Confidence 999999999999999999999999999998 677999999999999997 8888764 2348999999999997 899
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEe
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~ 207 (458)
|+..|. .+|++|||++++|.|||.
T Consensus 80 ~~~~p~---------------~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 80 CLEDED---------------VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred ccCCCC---------------ccEeeEeEEEECCEEEEC
Confidence 997652 358999999999999983
No 28
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.91 E-value=5.1e-24 Score=179.67 Aligned_cols=100 Identities=22% Similarity=0.427 Sum_probs=91.5
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeee
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~ 171 (458)
.|+.+|..+||++|..+.+.+.|.+|+|+|. .+|+++|++|+|||+|++|+.|.+. ++.|+||+|||+||+ +|+|+.
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~L~~G~~~-~~~i~CP~Hg~~Fdl~tG~~~~ 78 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRT-PDDQYYATDGLCTHEYAHLADGLVM-DTTVECPKHAGCFDYRTGEALN 78 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEe-CCCEEEEEcCcCCCCCCCCCCCEEc-CCEEECCccCCEEECCCCcccC
Confidence 4999999999999999999999999999997 6899999999999999999999995 789999999999998 899997
Q ss_pred cCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEec
Q 012708 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (458)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~ 208 (458)
.|.. ..|++|||++++|.|||.+
T Consensus 79 ~p~~--------------~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 79 PPVC--------------VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred CCcc--------------CCcceEeEEEECCEEEEeC
Confidence 6642 3589999999999999864
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.91 E-value=5.7e-24 Score=180.49 Aligned_cols=99 Identities=18% Similarity=0.398 Sum_probs=88.7
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCC-CCCcCCccccCCCe----EEcCCCCeEEcC-C
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHR-LAPLSEGRIDENGH----LQCSYHGWSFDG-C 166 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHr-ga~L~~G~~~~~~~----l~CpyHGw~Fd~-~ 166 (458)
.|++||.++||++|..+.+.+.|++|+|+|+ .+|+++|++|+|||+ +++|+.|.+. ++. |+||||||+||+ +
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~-~~~~~~a~~~~CpH~g~~~L~~g~~~-~~~~~~~i~Cp~Hg~~Fdl~t 78 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRV-PGDQVFAIQNMCPHKRAFVLSRGIVG-DAQGELWVACPLHKRNFRLED 78 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEe-CCCcEEEEeCcCCCCCCccccceEEc-cCCCcEEEECCcCCCEEEcCC
Confidence 5999999999999999999999999999998 689999999999999 8899999875 333 999999999999 8
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEec
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~ 208 (458)
|+|+..| ..+|++|||++++|.|||.+
T Consensus 79 G~~~~~~---------------~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 79 GRCLEDD---------------SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccccCCC---------------CccEeeEeEEEECCEEEEeC
Confidence 9988533 23699999999999999964
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.90 E-value=2.5e-23 Score=176.94 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=90.5
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeee
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~ 171 (458)
.|+.||.++||++|..+.+.+. ++|+|+|. +|+++|++|+|||+|++|+.|.+.+++.|+||+|||+||+ +|+|+.
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~--~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 78 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV--GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALC 78 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE--CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeC
Confidence 4999999999999999989887 89999995 8999999999999999999999963379999999999999 899986
Q ss_pred cCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCC
Q 012708 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (458)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~ 211 (458)
.|. ..+|++|+|++++|.|||.+.+.
T Consensus 79 ~p~--------------~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 79 LPA--------------TDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CCC--------------CCCcceEeEEEECCEEEEEccCC
Confidence 553 24699999999999999998653
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.89 E-value=3.8e-23 Score=172.20 Aligned_cols=92 Identities=24% Similarity=0.446 Sum_probs=84.9
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeeecCCC
Q 012708 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQA 175 (458)
Q Consensus 97 v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~iP~~ 175 (458)
||.++||++|+.+.+.++|++|+|+|. +|+++|++|+|||+|++|+.|.+. ++.|+||||||+||+ +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~CP~Hg~~Fdl~tG~~~~~p~~ 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ--GGEVHAIGAKCPHYGAPLAKGVLT-DGRIRCPWHGACFNLRTGDIEDAPAL 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE--CCEEEEEcCcCcCCCCccCCCeEe-CCEEEcCCCCCEEECCCCcCcCCCcc
Confidence 789999999999999999999999996 799999999999999999999986 789999999999998 9999987743
Q ss_pred CCCCcchhhcCCCCCCceeEeEEEECCeEE
Q 012708 176 ASEGPEARAIQSPRACATRFPTMVSQGLLF 205 (458)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~ 205 (458)
..|++|+|++++|.||
T Consensus 80 --------------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --------------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --------------CCcceEEEEEECCEEC
Confidence 2489999999999997
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.88 E-value=4.6e-22 Score=168.37 Aligned_cols=98 Identities=34% Similarity=0.720 Sum_probs=90.0
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCC-CCCCcCCccccCCC----eEEcCCCCeEEcC-C
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPH-RLAPLSEGRIDENG----HLQCSYHGWSFDG-C 166 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpH-rga~L~~G~~~~~~----~l~CpyHGw~Fd~-~ 166 (458)
+|+.||.++||++|..+.+.+.|++|+|||. .+|+++|++|+||| ++++|+.|.+. +. +|.||+|+|.||+ +
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~-~~~~vyAi~n~Cph~~~~~Ls~G~i~-~~~g~~~V~CPlH~~~f~L~t 78 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRV-RDGEVYAIDNRCPHSQAGPLSDGLIG-DGNGEPCVACPLHKWRFDLRT 78 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEE-STTEEEEEESBETTTTSSCGCGSEEE-ECTTEEEEEETTTTEEEETTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEe-CCCCEEEEeccCCccCCcccceeEEc-cCCCCEEEECCCCCCeEECCC
Confidence 5999999999999999999999999999997 69999999999999 89999999986 44 8999999999999 8
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEe
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~ 207 (458)
|+|+..| ..+|++|||++++|.|||.
T Consensus 79 G~~~~~~---------------~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 79 GECLEDP---------------DVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp TEESSEC---------------SEBSBEEEEEECTTEEEEE
T ss_pred cCcCCCC---------------CCcEEeEEEEEECCEEEEC
Confidence 9998633 2478999999999999984
No 33
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.87 E-value=6.6e-22 Score=168.67 Aligned_cols=100 Identities=17% Similarity=0.282 Sum_probs=87.1
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCC-cCCccccC-CC--eEEcCCCCeEEcC-CC
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAP-LSEGRIDE-NG--HLQCSYHGWSFDG-CG 167 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~-L~~G~~~~-~~--~l~CpyHGw~Fd~-~G 167 (458)
.|..||..+||++|..+.+.++|++|+|||...+|+++|++|+|||.|++ |+.|.+.+ ++ .|+||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 49999999999999999999999999999941379999999999999985 99998842 22 4999999999999 89
Q ss_pred CeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEe
Q 012708 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (458)
Q Consensus 168 ~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~ 207 (458)
+|+.-| ..+|++|||++++|.|||.
T Consensus 83 ~~~~~~---------------~~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDE---------------QFSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCC---------------CccEeeEeEEEECCEEEEe
Confidence 998532 2369999999999999985
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.86 E-value=1.5e-21 Score=162.91 Aligned_cols=94 Identities=32% Similarity=0.626 Sum_probs=79.1
Q ss_pred ceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCcc-ccCCCeEEcCCCCeEEcCC-CCe
Q 012708 93 HWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGR-IDENGHLQCSYHGWSFDGC-GSC 169 (458)
Q Consensus 93 ~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~-~~~~~~l~CpyHGw~Fd~~-G~~ 169 (458)
+|++||.+++|++ |+.+.+.+ |...++++. .+|+++|+.|+|||+|++|+.|. ..+++.|+||||||+||++ |+|
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~-~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~ 78 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRR-SDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGEC 78 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEE-TTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEe-CCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceE
Confidence 5999999999998 88889999 555555556 79999999999999999999994 3335799999999999996 999
Q ss_pred eecCCCCCCCcchhhcCCCCCCceeEeEEEECC
Q 012708 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQG 202 (458)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G 202 (458)
+..|... +++.|||+++++
T Consensus 79 ~~~p~~~--------------~l~~~~v~ve~~ 97 (97)
T PF00355_consen 79 VGGPAPR--------------PLPLYPVKVEGD 97 (97)
T ss_dssp EESTTCS--------------BSTEEEEEEETT
T ss_pred ecCCCCC--------------CcCCCCeEEeCC
Confidence 9988542 578999999874
No 35
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.85 E-value=6.8e-21 Score=161.71 Aligned_cols=104 Identities=29% Similarity=0.505 Sum_probs=89.4
Q ss_pred CCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCe
Q 012708 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSC 169 (458)
Q Consensus 91 ~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~ 169 (458)
...|+.+|..+||+++..+.+.+.+..+++++. .+|+++|++|+|||.|++|+.|.+.+...|+||.|+|.||+ +|+|
T Consensus 2 ~~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~-~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~ 80 (106)
T COG2146 2 MMNWIRICKVDDLPEGGGVRVLVGGGRFALVVR-ADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGEC 80 (106)
T ss_pred CCceEEEEehHhcCCCCceEEEecCCEEEEEEe-cCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCce
Confidence 358999999999999999988885536666666 79999999999999999999999974446999999999999 8999
Q ss_pred eecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecC
Q 012708 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (458)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~ 209 (458)
+.-|+.. .|++|||++.+|.|||.++
T Consensus 81 ~~~p~~~--------------~l~~y~vrve~g~v~v~~~ 106 (106)
T COG2146 81 LEPPAGK--------------TLKTYPVRVEGGRVFVDLD 106 (106)
T ss_pred ecCCCCC--------------ceeEEeEEEECCEEEEecC
Confidence 9876431 1899999999999999863
No 36
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.84 E-value=1.9e-20 Score=156.63 Aligned_cols=95 Identities=26% Similarity=0.489 Sum_probs=85.8
Q ss_pred eEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeeec
Q 012708 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (458)
Q Consensus 94 W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~i 172 (458)
|++++..++|++|+.+.+.+.|.+++|+|+ .+|+++|++|+|||+|++|..|.+. ++.|+||+|||+||+ ||+|+..
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~a~~~~CpH~g~~l~~~~~~-~~~i~Cp~H~~~f~~~~G~~~~~ 78 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRR-EGGEVYALSNRCTHQGCPLSEGEGE-DGCIVCPCHGSRFDLRTGEVVSG 78 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEe-CCCEEEEEcCcCCCCCccCCcCccC-CCEEEeCCCCCEEeCCCccCcCC
Confidence 899999999999999999999999999998 7889999999999999999999864 789999999999999 9999987
Q ss_pred CCCCCCCcchhhcCCCCCCceeEeEEEEC-CeE
Q 012708 173 PQAASEGPEARAIQSPRACATRFPTMVSQ-GLL 204 (458)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~e~~-G~V 204 (458)
|. ...|.+|++++.+ +.|
T Consensus 79 p~--------------~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 79 PA--------------PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred CC--------------CCCcCEEEEEEeCCceE
Confidence 64 2468999999994 444
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.82 E-value=4.2e-20 Score=152.73 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=77.5
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCC
Q 012708 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176 (458)
Q Consensus 97 v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~ 176 (458)
+|.++||++|+.+.+.+.|++|+|+|+ .+|+++|+.|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~-~~g~~~A~~~~CpH~g~~l~~g~~--~~~i~CP~Hg~~Fd~~G~~~~~Pa~- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRD-EDGVLHTVSATCTHLGCIVHWNDA--EKSWDCPCHGSRFSYDGEVIEGPAV- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEEC-CCCCEEEEcCcCCCCCCCCcccCC--CCEEECCCCCCEECCCCcEeeCCCC-
Confidence 578999999999999999999999998 799999999999999999998865 4699999999999999999987743
Q ss_pred CCCcchhhcCCCCCCceeEeEEEE
Q 012708 177 SEGPEARAIQSPRACATRFPTMVS 200 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~pv~e~ 200 (458)
..|.+|+|.-.
T Consensus 78 -------------~~l~~y~v~~~ 88 (91)
T cd03477 78 -------------SGLKPADDAPI 88 (91)
T ss_pred -------------CCCCeeEeecc
Confidence 35788988643
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.77 E-value=2.5e-18 Score=150.37 Aligned_cols=96 Identities=23% Similarity=0.292 Sum_probs=83.7
Q ss_pred EEeeecCCCCCCCcEEEEECC--eEEEEEEECC---------CCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEE
Q 012708 95 YPVSLVEDLDPNLPTAFQLLG--RDLVLWFDNN---------SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSF 163 (458)
Q Consensus 95 ~~v~~~~dL~~g~~~~~~~~g--~~lvl~R~~~---------~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~F 163 (458)
+.||.+++|++|+.+.+.+.| ++++|+|. . +|+++|++|+|||+|++|+.|. +++.|+||+|||+|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~-~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~--~~~~v~CP~Hg~~F 80 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKL-GVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP--SNKTFVCPCHFSQF 80 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEEC-CccccCccccCCEEEEEeCcCCCCCccccccc--cCCEEEccCcCCEE
Confidence 358999999999999999887 89999996 3 6999999999999999999976 36799999999999
Q ss_pred cCC--CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE--CCeEEEe
Q 012708 164 DGC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVW 207 (458)
Q Consensus 164 d~~--G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~V~V~ 207 (458)
|++ |+|+..|. ...|++||++++ +|.|||-
T Consensus 81 dl~tgG~~~~gPa--------------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 81 DPARGGQMVSGQA--------------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred eCCCCCeEEcCCC--------------CCCCCeEEEEEECCCCEEEEE
Confidence 993 78987653 246899999999 9999984
No 39
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.75 E-value=1.7e-17 Score=153.70 Aligned_cols=174 Identities=18% Similarity=0.226 Sum_probs=111.3
Q ss_pred EEEEecChhhhhhhccCCCcccccccccccCcCCC--CCccEEEeecCccceee---ec-C---------CC-CcEEEEE
Q 012708 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA--KPLPFKLESSGHWGFAG---AN-D---------GN-PRISAKF 302 (458)
Q Consensus 239 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~--~~~~~~~~~~~~~gf~~---~~-~---------~~-~~~~~~f 302 (458)
.++++|||+.++||+||++|++|||.+++|..+.. ....++++... .|+.. .. . .. ......|
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVP-RGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeC-CEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 45789999999999999999999999999987654 23345554332 23211 00 0 11 1224679
Q ss_pred EcceeeeEEEEEc-ccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccch
Q 012708 303 VAPCYYMNKIEID-TKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDG 381 (458)
Q Consensus 303 ~~P~~~~~~~~~~-~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~e 381 (458)
++||+....+... .+. .+....+.++..++|+++++|+++|.+.+++.... .......+...+.. ....|+.|
T Consensus 84 ~~P~~~~~~~~~~~~~~---~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~v~~e 157 (196)
T cd08878 84 LLPNVLLIDPGVAPAGT---REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDE-EKKDDEELTETLRS--GLSGAFNE 157 (196)
T ss_pred ECCEEEEEecccccCCc---CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCc-cccCCHHHHHHHHH--Hhhhhchh
Confidence 9999876543211 000 01112345567789999999999999888874310 00000112223322 46789999
Q ss_pred hHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 382 DMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 382 D~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
|+.|+|+||+.+.... .+ .....+|+++++||||++++
T Consensus 158 D~~i~e~q~~~~~~~~-----------~~--~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 158 DKEAVEAQQRIIDRDP-----------TR--EHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHHhcCC-----------cc--cccccccHHHHHHHHHHHHh
Confidence 9999999999876531 11 23455999999999999986
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.71 E-value=9.5e-17 Score=139.59 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=71.3
Q ss_pred CCCcEEEE--ECCeEEEEEEECCCCeE--EEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCc
Q 012708 105 PNLPTAFQ--LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGP 180 (458)
Q Consensus 105 ~g~~~~~~--~~g~~lvl~R~~~~G~v--~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~ 180 (458)
+|++..++ ..+..|+|++ .+|++ +|++|.|||+|++|+.+.. ++.|+||+|||+||.+|+++..|.
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~--~dg~i~~~A~~~~CpH~G~~l~~~~~--~~~i~CP~Hg~~Fd~tG~~~~gPa------ 91 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVE--EDKTIANYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDATGKVVRGPA------ 91 (126)
T ss_pred CCCeEEEEEecCCeEEEEEe--CCCeEEEEEecCCCcCCCCCcCccCC--CCEEEcCCCCCEECCCCCEecCCC------
Confidence 57776665 4455556555 58977 8999999999999998754 469999999999999999987653
Q ss_pred chhhcCCCCCCceeEeEEEECCeEEEecCC
Q 012708 181 EARAIQSPRACATRFPTMVSQGLLFVWPDE 210 (458)
Q Consensus 181 ~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~ 210 (458)
...|..|+|++++|.|||.+-.
T Consensus 92 --------~~~L~~y~V~vedg~I~V~~~~ 113 (126)
T cd03471 92 --------PLSLALVHATVDDDKVVLSPWT 113 (126)
T ss_pred --------CCCCceEeEEEECCEEEEEECc
Confidence 2468999999999999998653
No 41
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.69 E-value=6.4e-17 Score=135.69 Aligned_cols=71 Identities=17% Similarity=0.380 Sum_probs=64.3
Q ss_pred cCCCCCCCcEEEEE-CCeEEEEEEECCCCeEEEEecCCCCCCCCcCCc--cccCCCeEEcCCCCeEEcC-CCCeeecC
Q 012708 100 VEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG--RIDENGHLQCSYHGWSFDG-CGSCTRIP 173 (458)
Q Consensus 100 ~~dL~~g~~~~~~~-~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G--~~~~~~~l~CpyHGw~Fd~-~G~~~~iP 173 (458)
..+|++|..+.+.+ .|++|+|+|. +|+++|++|+|||+|++|+.| .++ ++.|+||+|||+||+ +|+++.-|
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~--~G~~~A~~n~CpH~g~pL~~g~g~~~-g~~V~CP~Hg~~FDLrTG~~~~~p 88 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS--KSELKACKNQCKHQGGLFIKDIEDLD-GRTVRCTKHNWKLDVSTMKYVNPP 88 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE--CCEEEEEcCCCCCCCccccCCcceEe-CCEEEeCCCCCEEEcCCCCCccCC
Confidence 37899999999999 9999999995 899999999999999999995 474 789999999999999 89998644
No 42
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.67 E-value=3e-16 Score=137.59 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=79.7
Q ss_pred EEeeecCCCCCCCcEEEEECC--eEEEEEEEC--------CCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEc
Q 012708 95 YPVSLVEDLDPNLPTAFQLLG--RDLVLWFDN--------NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164 (458)
Q Consensus 95 ~~v~~~~dL~~g~~~~~~~~g--~~lvl~R~~--------~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd 164 (458)
..||.++||++|+++.+.+.+ .+++|+|.. .+|+++|++|.|||.|++|+.+. +++.|.||+|||+||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~--~~~~i~CP~Hga~Fd 84 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA--DNKTFNCPCHFSVFD 84 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc--CCCEEEcCCCCCEEC
Confidence 358999999999999999865 478898720 38999999999999999999875 367999999999999
Q ss_pred CC--CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE-CCeEE
Q 012708 165 GC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLF 205 (458)
Q Consensus 165 ~~--G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~-~G~V~ 205 (458)
++ |+|+..|. ..+|.+|+|++. +|.||
T Consensus 85 l~tgG~~~~gP~--------------~~~L~~y~v~v~~~G~V~ 114 (129)
T TIGR02694 85 PEKGGQQVWGQA--------------TQNLPQIVLRVADNGDIF 114 (129)
T ss_pred CCCCCcEECCCC--------------CCCCCeeEEEEECCCeEE
Confidence 95 68886552 246899999997 59998
No 43
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.62 E-value=3.1e-15 Score=130.86 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=79.1
Q ss_pred eecCCCCCCCcEEEEECCeEEEEEEECC----------------------------CCeEEEEecCCCCCCCCcCCcccc
Q 012708 98 SLVEDLDPNLPTAFQLLGRDLVLWFDNN----------------------------SNKWVAFDDKCPHRLAPLSEGRID 149 (458)
Q Consensus 98 ~~~~dL~~g~~~~~~~~g~~lvl~R~~~----------------------------~G~v~A~~n~CpHrga~L~~G~~~ 149 (458)
..+++|++|+.+.+.+.|++|+|+|. . +|+++|+.+.|||.|+.+..+.+
T Consensus 4 vdl~~l~~G~~~~v~w~Gkpv~I~~r-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~- 81 (126)
T cd03470 4 VDLSKIEEGQLITVEWRGKPVFIRRR-TPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAG- 81 (126)
T ss_pred EEhhhCCCCCEEEEEECCeEEEEEEC-CHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccC-
Confidence 35688999999999999999999993 2 67999999999999998887765
Q ss_pred CCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEEC-CeEEE
Q 012708 150 ENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQ-GLLFV 206 (458)
Q Consensus 150 ~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~-G~V~V 206 (458)
+++.+.||+|||+||++|+.+..|. ...|..||+++.+ +.|+|
T Consensus 82 ~~~~~~CPcHgs~Fdl~G~~~~gPa--------------~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 82 DYGGFFCPCHGSHYDASGRIRKGPA--------------PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CCCEEEecCcCCEECCCCeEecCCC--------------CCCCCeeeEEEecCCEEEe
Confidence 3679999999999999999887653 2468999999877 67654
No 44
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.55 E-value=3e-14 Score=131.04 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=101.1
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcC---CCCCccEEEeecC---ccc----eeeec--------CCCCcEE
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRD---RAKPLPFKLESSG---HWG----FAGAN--------DGNPRIS 299 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~---~~~~~~~~~~~~~---~~g----f~~~~--------~~~~~~~ 299 (458)
...+++||||+++||++|+||++++|+++++... ......+.+.... ..+ +.... .......
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGYL 82 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEEEeccCCCCChhhcccchhhhcccccccccccCeE
Confidence 3568899999999999999999999999987421 0011122222110 001 11000 0111234
Q ss_pred EEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhc--cccc
Q 012708 300 AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHW--TSNK 377 (458)
Q Consensus 300 ~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~--~~~~ 377 (458)
..+++||+.+... .. .+++..++|+++++|++.+.++...... .. +...+++... +...
T Consensus 83 ~~~~fPn~~~~~~----------~~---~~~~~~~~P~~~~~t~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~ 143 (188)
T cd00680 83 YLYLFPNLMIGLY----------PD---SLQVQQFVPIGPNKTRLEVRLYRPKDED--AR----EEFDAELESLAGILRQ 143 (188)
T ss_pred EEEECCcEeeeec----------CC---EEEEEEEEecCCCcEEEEEEEEEecccc--cc----hhhHHHHHHhHHHHHH
Confidence 6789999986531 11 2334567999999999999876543210 00 1112222211 3568
Q ss_pred ccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 378 VYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 378 V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
|++||+.++|+||+++.+...+ .+.+ ...+..+..|++|+++.
T Consensus 144 v~~ED~~~~e~~Q~gl~s~~~~----------~~~l--~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 144 VLDEDIELCERIQRGLRSGAFR----------GGPL--SPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHHhccccCCcCC----------CCCC--CcccccHHHHHHHHHHh
Confidence 8999999999999999876432 3333 23468999999999875
No 45
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.50 E-value=1.6e-13 Score=126.98 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=72.5
Q ss_pred CCCCcEEEE-ECCeE-EEEEEECCCCeE--EEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCC
Q 012708 104 DPNLPTAFQ-LLGRD-LVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEG 179 (458)
Q Consensus 104 ~~g~~~~~~-~~g~~-lvl~R~~~~G~v--~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~ 179 (458)
++|++..+. +.|.+ +++++ .+|++ +|+++.|||.|++|+.+.. ++.|.||+|||+||.+|+.+..|.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~--~~g~~~~~a~~~~CtH~gc~l~~~~~--~~~~~CP~Hgs~Fd~tG~~~~gPa----- 143 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE--EDGTIASYGINAVCTHLGCVVPWNSG--ENKFQCPCHGSQYDATGKVVRGPA----- 143 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe--CCCEEEEEEecCCCCCCCCccccccC--CCEEEecCcCCEECCCCCCccCCC-----
Confidence 568888776 67777 55555 58999 6779999999999998875 359999999999999999887553
Q ss_pred cchhhcCCCCCCceeEeEEEECCeEEEec
Q 012708 180 PEARAIQSPRACATRFPTMVSQGLLFVWP 208 (458)
Q Consensus 180 ~~~~~~~~~~~~l~~~pv~e~~G~V~V~~ 208 (458)
...|+.|+|++++|.|+|.+
T Consensus 144 ---------~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 144 ---------PLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred ---------CCCCCeEeEEEECCEEEEEE
Confidence 34689999999999999987
No 46
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.46 E-value=4.5e-13 Score=125.03 Aligned_cols=166 Identities=12% Similarity=0.009 Sum_probs=96.7
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccE--------EEeec------Cccc-eeeecC--C--CCcE
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPF--------KLESS------GHWG-FAGAND--G--NPRI 298 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~--------~~~~~------~~~g-f~~~~~--~--~~~~ 298 (458)
..++++||||+++|||+|+||++.+|+++++.........+ ..... .... ...... + ....
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 45788999999999999999999999998754322110000 00000 0000 000000 0 0112
Q ss_pred EEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccc
Q 012708 299 SAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKV 378 (458)
Q Consensus 299 ~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V 378 (458)
...+++||++++.. ... +.+..+.|+++++|++.+..+..-.. .+..........+. .....|
T Consensus 84 ~~~~iFPN~~i~~~----------~~~---~~~~~~~P~~~~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~v 146 (190)
T cd08885 84 VLFAIFPTHLLALT----------PDY---VWWLSLLPEGAGRVRVRWGVLVAPEA---ADDPEAAEYIAELK-ALLDAI 146 (190)
T ss_pred EEEEECCcEEEEec----------CCe---EEEEEEEecCCCeEEEEEEEEEcchh---cccchhHHHHHHHH-HHHHHH
Confidence 35668999987631 121 22334689999999998865432110 10000000011111 124578
Q ss_pred cchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 379 YDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 379 ~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
++||..+++.+|+++.+... ..+++. ..+..+.+|++||.+.
T Consensus 147 ~~ED~~~~e~~Q~Gl~S~~~----------~~g~l~--~~E~~i~~fh~~l~~~ 188 (190)
T cd08885 147 NDEDRLVVEGVQRGLGSRFA----------VPGRLS--HLERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHhcccccCCCC----------CCCCCC--cccccHHHHHHHHHHH
Confidence 99999999999999988643 344443 3589999999999875
No 47
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.45 E-value=1.3e-12 Score=120.64 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=97.9
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEEeecCcc---cee--eecC----C-CCcEEEEEEccee
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHW---GFA--GAND----G-NPRISAKFVAPCY 307 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~---gf~--~~~~----~-~~~~~~~f~~P~~ 307 (458)
...+++||||+++||++|+||++++|++++..... ..+.++..+.. +.. .... . .......+++||+
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~ 80 (175)
T cd08883 4 REYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDY---ATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNL 80 (175)
T ss_pred EEeeeecCceEEehhcCCcccCcccchhHHhhccc---CceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCE
Confidence 35678999999999999999999999999754221 12222211110 010 0000 0 0112356688999
Q ss_pred eeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHh
Q 012708 308 YMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 387 (458)
Q Consensus 308 ~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle 387 (458)
.++.. + .. +. +..+.|+++++|++.+.++.... . ......+...+. ...|+.||..+++
T Consensus 81 ~i~~~---------~-~~--~~-~~~~~P~~p~~t~~~~~~~~~~~----~-~~~~~~~~~~~~---~~~v~~ED~~i~e 139 (175)
T cd08883 81 MLNRY---------P-PG--MD-VNVVLPLGPERCKVVFDYFVDDS----D-GSDEAFIAESIE---SDRVQKEDIEICE 139 (175)
T ss_pred eeeec---------C-Ce--EE-EEEEEeCCCCcEEEEEEEEEecc----c-cchhHHHHHHHH---HHHHHHHHHHHHH
Confidence 87631 2 21 22 23468999999999876553321 1 000011112111 4578999999999
Q ss_pred hhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 388 GQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 388 ~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
.+|+++.+.+.+ .+++ +...+..+..|++|+++.
T Consensus 140 ~vQ~Gl~S~~~~----------~G~l-~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 140 SVQRGLESGAYD----------PGRF-SPKRENGVHHFHRLLAQA 173 (175)
T ss_pred HHhhhhcCCCCC----------CCCC-CCccchHHHHHHHHHHHh
Confidence 999999886532 3433 223588999999999875
No 48
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.42 E-value=1.6e-12 Score=121.03 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=97.8
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEEeecCccc-------eeeec----CCCCcEEEEEEcce
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWG-------FAGAN----DGNPRISAKFVAPC 306 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~g-------f~~~~----~~~~~~~~~f~~P~ 306 (458)
..+++.||||+++||++|+||++++|+++++..... .+..+..+.+. +.... .........+++||
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN 80 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMD---TYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPN 80 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhccccc---ccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCC
Confidence 467889999999999999999999999998653221 12222111111 10000 00112235678899
Q ss_pred eeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhccccccc-chhHHH
Q 012708 307 YYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVY-DGDMIV 385 (458)
Q Consensus 307 ~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~-~eD~~v 385 (458)
++++.. .+... +.+..+.|+++++|++.+.++..- ..+.... ...+. +...|+ +||..+
T Consensus 81 ~~i~~~--------~~~~~---~~~~~~~P~~p~~t~~~~~~~~~~---~~~~~~~----~~~~~--~~~~v~~~ED~~l 140 (182)
T cd08886 81 TMLNVY--------PGAGN---MGVINIIPVDAETTLQHYDFYFRD---EELTDEE----KELIE--YYRQVLQPEDLEL 140 (182)
T ss_pred EEEEee--------CCCCe---EEEEEEEeCCCCeEEEEEEEEecC---CCccHHH----HHHHH--HHHHhcchhhHHH
Confidence 987632 12111 223456899999999877544111 1111111 11111 345677 999999
Q ss_pred HhhhhHHHhhhcccCCcccccccccccccc-----CcccHHHHHHHHHHHH
Q 012708 386 LQGQEKIFLSKLMEGSEDVNKEYTKITFTP-----TQADRLVLAFRNWLRR 431 (458)
Q Consensus 386 le~qq~~~~~~~~~~~~~~~~~~~~~~~~~-----~~aD~~v~afRrwl~~ 431 (458)
+|.+|+++.+... ..+++.+ ...+.++.+|.+||++
T Consensus 141 ~e~vQ~Gl~S~~~----------~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 141 VESVQRGLKSRAF----------GQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HHHHhcccccCCC----------CCceeccCcccCCccchhHHHHHHHHhc
Confidence 9999999987643 3454431 2458999999999975
No 49
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.39 E-value=1.3e-12 Score=121.05 Aligned_cols=165 Identities=12% Similarity=0.032 Sum_probs=97.2
Q ss_pred EEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEEeecC-ccce--------eeecCCC-----CcEEEEEE
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSG-HWGF--------AGANDGN-----PRISAKFV 303 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~-~~gf--------~~~~~~~-----~~~~~~f~ 303 (458)
...+++||||+++||++|+||++++|+++++.........++..... ..++ ....... ......++
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 35678999999999999999999999999864332221112111000 0000 0000000 01123467
Q ss_pred cceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhccc-ccccchh
Q 012708 304 APCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTS-NKVYDGD 382 (458)
Q Consensus 304 ~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~-~~V~~eD 382 (458)
+||+.++.. + . .+....+.|+++++|.+.+.++.... .+.+...+....... .. ..|..||
T Consensus 84 FPN~~i~~~---------~-~---~~~~~~~~P~~~~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ---------P-D---HLEIIQIEPGSPDRTRVTVYLLIPPP---PDTEEARAYWDKNWD--FLMAVVLDED 145 (185)
T ss_pred CCceEEEec---------C-C---eEEEEEEEcCCCCceEEEEEEEecCC---CCcHHHHHHHHHHHH--HHHhhhHHHH
Confidence 899887531 2 1 12234568999999999886543221 111111111111111 12 5789999
Q ss_pred HHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 383 MIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 383 ~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
..+++.+|+++.+...+ .+. ....+..+.+|++|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~----------~~~--l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGAND----------HLT--FGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCC----------ceE--eecCCHHHHHHHHHHHHH
Confidence 99999999999876432 222 245799999999999875
No 50
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.35 E-value=7.6e-12 Score=118.60 Aligned_cols=164 Identities=14% Similarity=0.125 Sum_probs=97.3
Q ss_pred EEEEEecChhhhhhhccCCCccccccccccc-CcC--CCCCc-------cEEEee---------cCccce------eeec
Q 012708 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG-RRD--RAKPL-------PFKLES---------SGHWGF------AGAN 292 (458)
Q Consensus 238 ~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~-~~~--~~~~~-------~~~~~~---------~~~~gf------~~~~ 292 (458)
..+.++||||+++||++|+||++++|+++.. ..+ ..... .+.... ....+- .+..
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 4678899999999999999999999999764 111 10000 000000 000000 0000
Q ss_pred C-CCCcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhh
Q 012708 293 D-GNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHE 371 (458)
Q Consensus 293 ~-~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~ 371 (458)
. ........+++||++++.. ++ .+.+..+.|+++++|++.+.++..-.. ...... .......
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~~---------~d----~~~~~~~~P~~p~~t~~~~~~~~~~~~--~~~~~~--~~~~~~~ 156 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHLH---------PD----HVVTFRVLPLSPDETLVRCKWLVHPDA--VEGVDY--DLDDLVE 156 (205)
T ss_pred ccccCceEEEEeCCcEEEEEc---------CC----EEEEEEEEeCCCCceEEEEEEEECCch--hccccc--CHHHHHH
Confidence 1 1112345678899977531 22 123345689999999998865432111 011111 0112111
Q ss_pred hcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 372 HWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 372 ~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
+...|+.||..|+|.+|+++.+... ..+++.+ .+.++.+|.+|+++.
T Consensus 157 --~~~~v~~ED~~i~e~vQ~Gl~S~~~----------~~g~l~~--~E~~v~~F~~~~~~~ 203 (205)
T cd08884 157 --VWDATNRQDWAICERNQRGVNSPAY----------RPGPYSP--MEGGVLAFDRWYLER 203 (205)
T ss_pred --HHHHHHHHHHHHHHHhcccccCCCc----------CCCCcCC--ccHHHHHHHHHHHHH
Confidence 3458899999999999999987643 3554533 589999999999875
No 51
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.35 E-value=5.1e-12 Score=116.64 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=77.7
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECC---------------------------------CCeEEEEecCCCCC
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN---------------------------------SNKWVAFDDKCPHR 139 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~---------------------------------~G~v~A~~n~CpHr 139 (458)
.|+.| ..++|++|+.+.+.+.|++|+|+|... +++++|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 57888 799999999999999999999998411 48999999999999
Q ss_pred CCCc-CCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCe
Q 012708 140 LAPL-SEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGL 203 (458)
Q Consensus 140 ga~L-~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~ 203 (458)
|+.+ ..+.....+.+.||+||++||.+|+.+..|. ...|..||++..++.
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa--------------~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA--------------PLNLPVPPYKFLSDT 169 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC--------------CCCCCCCCEEEcCCC
Confidence 9755 4444432468999999999999999887553 346889999887654
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.32 E-value=3.6e-12 Score=118.63 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=96.7
Q ss_pred EEEecChhhhhhhccCCCcccccccccccCcCCCCCc---cEEEeecCccceee-----------------e--------
Q 012708 240 RDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPL---PFKLESSGHWGFAG-----------------A-------- 291 (458)
Q Consensus 240 ~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~---~~~~~~~~~~gf~~-----------------~-------- 291 (458)
++++||||+++||++|+||++++|+++++........ ...++..+..+... .
T Consensus 12 ~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (209)
T PF00848_consen 12 YEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPPG 91 (209)
T ss_dssp HHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred EEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhcccc
Confidence 4589999999999999999999999986533222111 01111111111100 0
Q ss_pred -c-CCCCcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhh
Q 012708 292 -N-DGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRW 369 (458)
Q Consensus 292 -~-~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~ 369 (458)
. .........+++||+.+... +... . +..+.|++|++|.+.+........ ...+.+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~iFPn~~i~~~---------~~~~-~---~~~~~P~~p~~t~~~~~~~~~~~~--~~~~~~~~~~~~~ 156 (209)
T PF00848_consen 92 LPDDQRMGYRNYVIFPNLSIIVY---------PDHF-T---VRTIIPIGPDRTEVWSWWFVPKDE--GAPPEFREARIRN 156 (209)
T ss_dssp HHHHHHTSEEEEEETTTEEEEE----------TTTT-E---EEEEEEESTTEEEEEEEEEEETT----STHHHHHHHHHH
T ss_pred ccccccccccceeeCCCEEEEec---------cccc-E---EEEEEECCCCeEEEEEEEEEeCCc--ccchhhHHHHHHH
Confidence 0 00112347789999987621 2221 1 234589999999998876533321 0111221212221
Q ss_pred hhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 370 HEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 370 ~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
...+. .|+.||+.++|++|+++.+.+.+ ++. +....|..+..|++|+++.
T Consensus 157 ~~~~~--~~~~ED~~~~e~~Q~gl~s~~~~----------~~~-~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 157 WDRFF--GVFAEDIEIVERQQRGLRSRGFD----------PGR-LSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHH--STHHHHHHHHHHHHHHTTSSTSC----------TSE-ESSCSSHHHHHHHHHHHHH
T ss_pred HHhcC--cHHHHHHHHHHHHHHHHcCCCCC----------CCC-CCCcCCHHHHHHHHHHHHH
Confidence 11111 18999999999999999875432 333 3356899999999999875
No 53
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.31 E-value=4.7e-12 Score=104.91 Aligned_cols=86 Identities=33% Similarity=0.499 Sum_probs=67.1
Q ss_pred EEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccch
Q 012708 302 FVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDG 381 (458)
Q Consensus 302 f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~e 381 (458)
|++||++.+...... ..+....+..+++++|++||+||++++++++|.. .+.+.+|+|+.|+.++.|++|
T Consensus 1 F~pPc~v~~~~~~~~----~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~------~~~k~~P~wl~H~~~n~VLd~ 70 (92)
T PF08417_consen 1 FIPPCLVRSTEEGPK----KKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPA------WIFKLIPRWLSHLTSNKVLDQ 70 (92)
T ss_pred CCCCEEEEEeccccc----cCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhh------HHhhcCCHHHHHHhhCcccHH
Confidence 678999887611111 1223334666778899999999999999999832 244789999999999999999
Q ss_pred hHHHHhhhhHHHhhhc
Q 012708 382 DMIVLQGQEKIFLSKL 397 (458)
Q Consensus 382 D~~vle~qq~~~~~~~ 397 (458)
|+.+|+.||+.+.+.+
T Consensus 71 Dl~lLh~Qe~~l~~~g 86 (92)
T PF08417_consen 71 DLYLLHGQERRLAREG 86 (92)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998753
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.93 E-value=6.6e-09 Score=94.80 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCeEEEEecCCCCCCCCcCC---------------ccccCCCeEEcCCCCeEEcC-CCC-eeecCCCCCCCcchhhcCCC
Q 012708 126 SNKWVAFDDKCPHRLAPLSE---------------GRIDENGHLQCSYHGWSFDG-CGS-CTRIPQAASEGPEARAIQSP 188 (458)
Q Consensus 126 ~G~v~A~~n~CpHrga~L~~---------------G~~~~~~~l~CpyHGw~Fd~-~G~-~~~iP~~~~~~~~~~~~~~~ 188 (458)
+|+++|+.+.|+|+|++|.. |.. .++.|.||+|||+||+ +|. .+..| +
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~-~~~~i~CPcHgS~FD~~tGg~v~~GP--------------A 138 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLAS-KGAVIHCCCHGSTYDPYKGGVVLTGP--------------A 138 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccc-cCCEEEcCCCCCEEeCCCCCeEcCCC--------------C
Confidence 68999999999999998752 444 3679999999999999 564 33222 2
Q ss_pred CCCceeEeEEEEC--CeEEE
Q 012708 189 RACATRFPTMVSQ--GLLFV 206 (458)
Q Consensus 189 ~~~l~~~pv~e~~--G~V~V 206 (458)
...|..|.+++++ |.||+
T Consensus 139 ~~pLp~~~L~~d~~~d~iyA 158 (171)
T cd03475 139 PRPLPAVILEYDSSTDDLYA 158 (171)
T ss_pred CCCcCEeEEEEeCCCCcEEE
Confidence 3468999998884 77775
No 55
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.82 E-value=3.8e-08 Score=95.93 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=61.7
Q ss_pred EEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEee--cCCCeEEEEEEeeccccccCCCCccc--ccchhhhhhhccc
Q 012708 300 AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVP--MAPGKTRSIVCSARNFFQFTMPGPAW--WQVVPRWHEHWTS 375 (458)
Q Consensus 300 ~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tP--v~p~~trv~~~~~R~f~~~~~p~~~~--~~~~~r~~~~~~~ 375 (458)
..+++||+.+.. +... + ++..+.| ++|++|.+...++.....-..+.... .+...........
T Consensus 129 ~~~lFPN~~i~~----------~p~~--~-~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T cd08882 129 HYTLFPNFTILP----------GPDG--L-LVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELGGL 195 (243)
T ss_pred eEEECCCccccC----------CCCc--c-EEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccccccccc
Confidence 456889887652 2221 1 2234578 69999998776543321100000000 0111111110013
Q ss_pred ccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHh
Q 012708 376 NKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 376 ~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
..|++||..+++.+|+++.+.+.+ .+.+ .-.-+..+.+|.+||+++
T Consensus 196 ~~V~~ED~~~~e~vQ~Gl~S~~~~----------~~~l-~~~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 196 GLVLDQDFSNLPAVQKGMHSRGFG----------GLVL-ANQEESRIRHFHEVLDDY 241 (243)
T ss_pred cchhHhHHHHHHHHHHHhccCCCC----------Cccc-CchHHHHHHHHHHHHHHH
Confidence 589999999999999999986543 2222 112248999999999876
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.75 E-value=9.2e-08 Score=91.94 Aligned_cols=174 Identities=12% Similarity=0.064 Sum_probs=90.7
Q ss_pred EEEecChhhhhhhccCCCccccccc--ccccCcCCCCCccEEEeecCcc---------------c-------eee-----
Q 012708 240 RDLFYGYDTLMENVSDPSHIDFAHH--KVTGRRDRAKPLPFKLESSGHW---------------G-------FAG----- 290 (458)
Q Consensus 240 ~~~~~nwk~~~EN~~D~~H~~~vH~--~~~~~~~~~~~~~~~~~~~~~~---------------g-------f~~----- 290 (458)
..+++|||+.+||+.|+||++.+|. .++|...........++..+.- + |..
T Consensus 6 ~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (222)
T cd08880 6 QRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFTLL 85 (222)
T ss_pred eecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccccC
Confidence 4678999999999999999999999 6665422111101222211100 0 000
Q ss_pred -e--------cCCCCcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcc
Q 012708 291 -A--------NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPA 361 (458)
Q Consensus 291 -~--------~~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~ 361 (458)
. ..+........++||+.+... . .. +.+..+.|+++++|++.+.+...-. ..+.
T Consensus 86 d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~---------~-~~---l~v~~~~P~gpd~t~~~~~~~~~~~----~~~e 148 (222)
T cd08880 86 DPSLLDGRAEFDDDITLVIQSIFPSLVVQQI---------Q-NT---LAVRHIIPKGPDSFELVWTYFGYED----DDEE 148 (222)
T ss_pred CHHHHhhhHhhcCCCceEEEEECCCEEEecc---------C-Cc---EEEEEEEecCCCeEEEEEEEEEecC----CCHH
Confidence 0 000111235568898876421 1 11 2223468999999998776431111 1111
Q ss_pred cccchhhhhhhcc-cccccchhHHHHhhhhHHHhhhcccCCcccccc--ccccccccCcccHHHHHHHHHHHHh
Q 012708 362 WWQVVPRWHEHWT-SNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKE--YTKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 362 ~~~~~~r~~~~~~-~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~--~~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
..+...+-..... ...|..||..+++.+|+++.+...+.+ .+... .... .-....+..+.+|-+|.++.
T Consensus 149 ~~~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~~~~~-~~~~g~~~~~~-~~~~~~E~~ir~f~~~y~~~ 220 (222)
T cd08880 149 MTRLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDGGDRS-VIEMGGGDVES-SDHMVTEAAIRGFWKYYRKV 220 (222)
T ss_pred HHHHHHHHhcccCCcCCCccchHHHHHHhCchhcCCCcccc-hhhhCCCCCCC-cCcccCcHHHHHHHHHHHHH
Confidence 1111111011001 246889999999999999987654300 00000 0000 11123577888887776654
No 57
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.57 E-value=1.5e-06 Score=82.42 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=95.7
Q ss_pred CCCCCCCCCCceEEEEEEEecChhhhhhhccCCCcccccccccccC--cCCCCCcc--------E-EE--eecCcccee-
Q 012708 224 LPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGR--RDRAKPLP--------F-KL--ESSGHWGFA- 289 (458)
Q Consensus 224 ~p~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~--~~~~~~~~--------~-~~--~~~~~~gf~- 289 (458)
+|+.|.+.+.........+.|||...+||.+|..|+ |+|..+.-. .+.+-++. + ++ +..++-|+.
T Consensus 14 lP~~fld~~~~~~g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~ 92 (240)
T PF11723_consen 14 LPPGFLDDDIVIFGMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMD 92 (240)
T ss_dssp S-TTTTSTTEEEEEEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE
T ss_pred CCccccCCcceEEeeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeee
Confidence 444566666666666788999999999999999998 999974211 01000000 1 11 111221211
Q ss_pred -----------eecCCC--------Cc---EEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEE
Q 012708 290 -----------GANDGN--------PR---ISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVC 347 (458)
Q Consensus 290 -----------~~~~~~--------~~---~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~ 347 (458)
+...+. +. ..+..-.|++.... +...+. +.-.-+++|++..+.+++..
T Consensus 93 ~~~~~~~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~-------~~P~p~---~~qyEwYVPID~~~h~Y~q~ 162 (240)
T PF11723_consen 93 RLTEHYEPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVE-------NWPYPD---FTQYEWYVPIDEDTHRYFQL 162 (240)
T ss_dssp -CHHHEEEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEE-------S-SSTT---EEEEEEEEEEETTEEEEEEE
T ss_pred cccccceEEEecccCCceeecCCCCCceeEEEeeEeccceeecc-------cCCCCC---eeEEEEEEEecccceeeEeE
Confidence 000000 00 11222223332210 111222 22234579999999999987
Q ss_pred eeccccccCCCCcccc-cchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHH
Q 012708 348 SARNFFQFTMPGPAWW-QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFR 426 (458)
Q Consensus 348 ~~R~f~~~~~p~~~~~-~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afR 426 (458)
..+.-... -...+|. +.-..|.. ...+...++|+.+.|++|+-+.+.. .|.. ....+.|..|+++|
T Consensus 163 l~~~~~t~-ee~~~f~~~f~~~~~~-~~l~gFN~~D~wAREamq~fY~d~~---------Gw~~--E~L~~~D~sIi~WR 229 (240)
T PF11723_consen 163 LGKVCPTE-EERKAFEYEFEEQWKP-LALHGFNDDDIWAREAMQPFYADDT---------GWDR--EQLFEPDKSIIAWR 229 (240)
T ss_dssp EEEE-SSH-HHHHHHHHHHHHTHHH-HTTTTTTHHHHHHHHHHHHHHHTSH---------HHHH------GGGHHHHHHH
T ss_pred EeeecCCH-HHHHHHHHHHHHHhHH-hhccCCCchhHHHHHHhhhhhhccC---------CCCH--HHhcCcchhHHHHH
Confidence 76543110 0001111 11112211 2356788999999999998776521 2333 34678999999999
Q ss_pred HHHHHhcCC
Q 012708 427 NWLRRHGNS 435 (458)
Q Consensus 427 rwl~~~~~~ 435 (458)
|...++..|
T Consensus 230 kLas~~nrg 238 (240)
T PF11723_consen 230 KLASEHNRG 238 (240)
T ss_dssp HHHHHH-SE
T ss_pred HHHHHhhcc
Confidence 999998654
No 58
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.31 E-value=1.2e-06 Score=81.34 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=57.2
Q ss_pred CeEEEEEEECCCC-----eEEEEecCCCCCCCCcCC-ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCC
Q 012708 115 GRDLVLWFDNNSN-----KWVAFDDKCPHRLAPLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSP 188 (458)
Q Consensus 115 g~~lvl~R~~~~G-----~v~A~~n~CpHrga~L~~-G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~ 188 (458)
+.+...+++ .++ +|.|+...|.|.|+.... +.. ..+.+.||+||.+||.+|+.+..|..
T Consensus 83 ~~~~~~~~~-~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~-~~~~~~CPCHGS~yd~~g~vv~GPA~------------- 147 (177)
T COG0723 83 GPKGGVTRD-GDGGVGNKEIVAYSAICTHLGCTVPWNNAG-AEGGFFCPCHGSRYDPDGGVVKGPAP------------- 147 (177)
T ss_pred cccccceec-ccCCCCCccEEEEeeeccCCCCccCcccCC-CCCeEEccCCCCeEcCCCCeeCCCCC-------------
Confidence 344444444 344 455999999999999988 344 35799999999999999997776543
Q ss_pred CCCceeEeEEEECC-eEEEecCC
Q 012708 189 RACATRFPTMVSQG-LLFVWPDE 210 (458)
Q Consensus 189 ~~~l~~~pv~e~~G-~V~V~~~~ 210 (458)
..|..++++..++ .+.+-.+.
T Consensus 148 -~~L~~~~~~~~~d~~~~~~~~~ 169 (177)
T COG0723 148 -RPLPIPPLEYDSDKLYLIGLGT 169 (177)
T ss_pred -CCcCCceEEEeCCceEEEEecc
Confidence 3577888877776 44444443
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.20 E-value=3.7e-06 Score=79.94 Aligned_cols=136 Identities=11% Similarity=-0.002 Sum_probs=71.6
Q ss_pred EEEEecChhhhhhhcc-CCCcccccccccccCcCCCCCccEEEeecCcccee--eecCCC------CcEEEEEEcceeee
Q 012708 239 QRDLFYGYDTLMENVS-DPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFA--GANDGN------PRISAKFVAPCYYM 309 (458)
Q Consensus 239 ~~~~~~nwk~~~EN~~-D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~gf~--~~~~~~------~~~~~~f~~P~~~~ 309 (458)
...++||||+++|||+ |.||+.++|.+++............ ....|.. ....+. ......+++||+.+
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~GHg~~~~~~~~~~~~iFPN~~~ 86 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASALEAGLPPDAADLP---PIDLGLQFTAPWHGHGLGFFLDSPQHGTIFPNLSF 86 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHHHhhCCcccccCC---CCCCCcEEEeCCCCeEEEEeccCcceeeECCcchh
Confidence 5678999999999999 9999999999976322211000000 0001110 000000 01124567788765
Q ss_pred EEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcc--cccccchhHHHHh
Q 012708 310 NKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWT--SNKVYDGDMIVLQ 387 (458)
Q Consensus 310 ~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~--~~~V~~eD~~vle 387 (458)
... . .+.+..+.|+++++|.+.+.+.... +.++ ...+.+.+.....+ .-.+-.+|..+++
T Consensus 87 ~~~----------~----~~~~r~~~P~gp~~tev~~~~~~~k---da~e-~~~~~~~~~~~~~~gpaG~~~~DD~e~~e 148 (206)
T cd08881 87 LPG----------Y----FNTLRVWHPRGPDETEVWTWTLVDK---DAPE-EVKDRVRRQYTRTFGPAGTFEQDDGENWE 148 (206)
T ss_pred hhc----------c----CceEEEEEeCCCCeEEEEEEEEecC---CCCH-HHHHHHHHHHHhccCCcCCCcCchHHHHH
Confidence 421 1 1122234799999999877654332 1121 11111111111001 1124469999999
Q ss_pred hhhHHHhh
Q 012708 388 GQEKIFLS 395 (458)
Q Consensus 388 ~qq~~~~~ 395 (458)
.+|+++..
T Consensus 149 ~~Q~g~~~ 156 (206)
T cd08881 149 EITRVARG 156 (206)
T ss_pred HHHHhhcc
Confidence 99998874
No 60
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.14 E-value=4e-06 Score=81.42 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=27.3
Q ss_pred EEEEecChhhhhhhccCCCccccccccccc
Q 012708 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTG 268 (458)
Q Consensus 239 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~ 268 (458)
.+.++||||+++||+.|.||++++|.+++.
T Consensus 5 ~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 5 RYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred EEEeeceEEEEeeecCccccCccccHHHHH
Confidence 457899999999999999999999999863
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.97 E-value=9.6e-06 Score=74.73 Aligned_cols=75 Identities=19% Similarity=0.347 Sum_probs=60.6
Q ss_pred ecCCCCCCCcEEEEECCeEEEEE--------------------------EECCCCeEEEEecCCCCCCCCcCCccccCCC
Q 012708 99 LVEDLDPNLPTAFQLLGRDLVLW--------------------------FDNNSNKWVAFDDKCPHRLAPLSEGRIDENG 152 (458)
Q Consensus 99 ~~~dL~~g~~~~~~~~g~~lvl~--------------------------R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~ 152 (458)
..++||+|+-++++-.|+++++- |. ++-++.++..+|.|.|+-...-.. +.|
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rv-k~~ewl~~igVCThLGCVp~~~AG-d~g 168 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRV-KKPEWLVVIGVCTHLGCVPIANAG-DYG 168 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhc-cCcceEEEEeeecccccccccccc-ccC
Confidence 45678888888888888888883 44 455689999999999996664444 356
Q ss_pred eEEcCCCCeEEcCCCCeeecCCC
Q 012708 153 HLQCSYHGWSFDGCGSCTRIPQA 175 (458)
Q Consensus 153 ~l~CpyHGw~Fd~~G~~~~iP~~ 175 (458)
..-||+||..||..|+....|+.
T Consensus 169 g~~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 169 GYYCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ceecccccccccccCceecCCCC
Confidence 89999999999999999998854
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.91 E-value=2.6e-05 Score=77.35 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCeEEEEecCCCCCCCCcCCc----------------------------ccc--CCCeEEcCCCCeEEcCC--CCeeecC
Q 012708 126 SNKWVAFDDKCPHRLAPLSEG----------------------------RID--ENGHLQCSYHGWSFDGC--GSCTRIP 173 (458)
Q Consensus 126 ~G~v~A~~n~CpHrga~L~~G----------------------------~~~--~~~~l~CpyHGw~Fd~~--G~~~~iP 173 (458)
++.|.||...|+|.|+++..- ... ..+.|.||+||.+||.+ |+.+..|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 578999999999999988321 110 01389999999999994 4677665
Q ss_pred CCCCCCcchhhcCCCCCCceeEeEEEE--CCeEEE
Q 012708 174 QAASEGPEARAIQSPRACATRFPTMVS--QGLLFV 206 (458)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~V~V 206 (458)
.. ..|..++++.. +|.|++
T Consensus 255 A~--------------rpLp~i~l~~d~~~~~l~A 275 (321)
T TIGR03171 255 TV--------------RPLPAVILEWDSSTDYLYA 275 (321)
T ss_pred CC--------------CCCCcceEEEeCCCCeEEE
Confidence 43 34677777775 566665
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.94 E-value=0.0037 Score=65.43 Aligned_cols=39 Identities=33% Similarity=0.665 Sum_probs=33.4
Q ss_pred CCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeeecCCCCC
Q 012708 138 HRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQAAS 177 (458)
Q Consensus 138 Hrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~iP~~~~ 177 (458)
|.|+||..|-. ..++++|||||.+|+. +|...+-|....
T Consensus 1 hygapl~~g~~-s~g~v~cpwhgacfn~~~gdiedfP~~~s 40 (478)
T KOG1336|consen 1 HYGAPLAKGVL-SRGRVRCPWHGACFNLSTGDIEDFPGLDS 40 (478)
T ss_pred CCCcchhhccc-cCCcccccccceeecCCcCchhhCcCccc
Confidence 99999999955 5899999999999999 788877776543
No 64
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=62.08 E-value=4.7 Score=34.40 Aligned_cols=36 Identities=22% Similarity=0.534 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCCCCCcCCccccC-CCeEEcCCCCeEEcC
Q 012708 127 NKWVAFDDKCPHRLAPLSEGRIDE-NGHLQCSYHGWSFDG 165 (458)
Q Consensus 127 G~v~A~~n~CpHrga~L~~G~~~~-~~~l~CpyHGw~Fd~ 165 (458)
|++--..-.|. |||..|.+-. .+.++||+||=--+-
T Consensus 63 g~~e~v~~~Cr---APL~~G~LC~RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 63 GEFEPVPHACR---APLPNGGLCPRRDRKKCPFHGKIIPR 99 (110)
T ss_pred CccCcCchhhc---CCCCCCCcCCccCcccCCCCCcccCC
Confidence 55554444564 6787787642 357899999876554
No 65
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=41.23 E-value=16 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=24.9
Q ss_pred EecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC
Q 012708 132 FDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (458)
Q Consensus 132 ~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~ 165 (458)
+...||--|+||.. .+|.+.||-||-++..
T Consensus 27 L~~hCp~Cg~PLF~----KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 27 LAKHCPKCGTPLFR----KDGEVFCPVCGYREVV 56 (131)
T ss_pred HHhhCcccCCccee----eCCeEECCCCCceEEE
Confidence 45679999999987 2679999999987764
No 66
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=29.69 E-value=2.6e+02 Score=23.59 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=39.1
Q ss_pred CCCCCcEEEE--ECCe--EEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC
Q 012708 103 LDPNLPTAFQ--LLGR--DLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (458)
Q Consensus 103 L~~g~~~~~~--~~g~--~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~ 165 (458)
|.+|+...+. ..|. ++++++. .+|++++..|.|-==+ ..|...+++.|+|-.-|-+|..
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~-~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~ 64 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKK-PDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNL 64 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEEC-CCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEeh
Confidence 4444444333 3443 6777787 7899999888875321 1233445789999999999986
No 67
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=28.29 E-value=14 Score=30.33 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=39.0
Q ss_pred cCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcC
Q 012708 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (458)
Q Consensus 90 ~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~ 144 (458)
+...||.+-. ++|+-.+++.+|+.+...+. ......+|..+-|++|..++
T Consensus 5 l~g~WYVLe~----~pGEHLvlealgqrls~iWt-S~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 5 LSGTWYVLED----EPGEHLVLEALGQRLSGIWT-SRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp TSSSEEEEES----STT-BEEEEETTEEEEEEBS-SHHHHHHHHHTSTSS--EEE
T ss_pred cccceEEecC----CCCceeeHHHHhhhHHhhee-cHHHHHHHHHhCcccCcEee
Confidence 4679999876 47999999999999999997 66667888899999887543
No 68
>PF12266 DUF3613: Protein of unknown function (DUF3613); InterPro: IPR022053 This family of proteins is found in bacteria. Proteins in this family are typically between 94 and 126 amino acids in length.
Probab=27.68 E-value=61 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=26.3
Q ss_pred cccCcccHHHHHHHHHHHHhcCCCCCCCCC
Q 012708 413 FTPTQADRLVLAFRNWLRRHGNSQPEWFGF 442 (458)
Q Consensus 413 ~~~~~aD~~v~afRrwl~~~~~~~p~w~~~ 442 (458)
..++..+...++|+|||+-|-..=|+|++.
T Consensus 35 ~qp~~g~~a~layqRYL~SF~~~IPe~f~~ 64 (67)
T PF12266_consen 35 PQPMTGEEATLAYQRYLDSFKHPIPEFFES 64 (67)
T ss_pred CCCCchHHHHHHHHHHHHHccCCCchHhhc
Confidence 456778999999999999999999999863
No 69
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=82 Score=24.01 Aligned_cols=18 Identities=17% Similarity=0.459 Sum_probs=14.8
Q ss_pred cCCCeEEcCCCCeEEcCC
Q 012708 149 DENGHLQCSYHGWSFDGC 166 (458)
Q Consensus 149 ~~~~~l~CpyHGw~Fd~~ 166 (458)
++.+.++|||-|-.|.++
T Consensus 44 g~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 44 GDEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCCcEecCccccEEEec
Confidence 356899999999999764
No 70
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=22.64 E-value=46 Score=25.29 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.2
Q ss_pred CeEEcCCCCeEEcCC
Q 012708 152 GHLQCSYHGWSFDGC 166 (458)
Q Consensus 152 ~~l~CpyHGw~Fd~~ 166 (458)
-.|+||-||-.....
T Consensus 31 vtI~CP~HG~~~~s~ 45 (60)
T PF05265_consen 31 VTIRCPKHGNFTCST 45 (60)
T ss_pred eEEECCCCCcEEecc
Confidence 479999999877654
No 71
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.46 E-value=37 Score=25.26 Aligned_cols=23 Identities=22% Similarity=0.632 Sum_probs=19.3
Q ss_pred CCeEEc-----CCCCeEEcCCCCeeecC
Q 012708 151 NGHLQC-----SYHGWSFDGCGSCTRIP 173 (458)
Q Consensus 151 ~~~l~C-----pyHGw~Fd~~G~~~~iP 173 (458)
++.++| |||-|.|+-.|+|+.-+
T Consensus 19 dDiVvCp~CgapyHR~C~~~~g~C~~~~ 46 (54)
T PF14446_consen 19 DDIVVCPECGAPYHRDCWEKAGGCINYS 46 (54)
T ss_pred CCEEECCCCCCcccHHHHhhCCceEecc
Confidence 567787 59999999999999755
No 72
>PRK00420 hypothetical protein; Validated
Probab=21.51 E-value=74 Score=27.30 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=25.5
Q ss_pred EecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC
Q 012708 132 FDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (458)
Q Consensus 132 ~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~ 165 (458)
+...||-=|.||..- .+|.++||-||-.+..
T Consensus 22 l~~~CP~Cg~pLf~l---k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 22 LSKHCPVCGLPLFEL---KDGEVVCPVHGKVYIV 52 (112)
T ss_pred ccCCCCCCCCcceec---CCCceECCCCCCeeee
Confidence 568899999999854 2578999999987776
No 73
>PF14920 MTBP_C: MDM2-binding
Probab=21.21 E-value=39 Score=32.67 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.4
Q ss_pred CeEEcCCCCeEEcCCC
Q 012708 152 GHLQCSYHGWSFDGCG 167 (458)
Q Consensus 152 ~~l~CpyHGw~Fd~~G 167 (458)
.+.+|-|||-.|.+|.
T Consensus 15 ka~~chYHgieycLD~ 30 (251)
T PF14920_consen 15 KASVCHYHGIEYCLDD 30 (251)
T ss_pred hhhccccCCceeeccc
Confidence 4789999999999976
Done!