Query 012708
Match_columns 458
No_of_seqs 279 out of 2230
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 14:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 5.9E-53 2E-57 429.1 27.9 310 89-433 4-335 (349)
2 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3.9E-46 1.3E-50 390.6 32.3 336 66-439 18-411 (446)
3 3n0q_A Putative aromatic-ring 100.0 2.7E-47 9.1E-52 394.1 21.2 325 66-432 16-396 (409)
4 2zyl_A Possible oxidoreductase 100.0 2.5E-46 8.6E-51 385.1 26.1 310 89-435 21-339 (386)
5 3vca_A Ring-hydroxylating diox 100.0 4.2E-47 1.4E-51 393.0 20.4 325 66-432 18-399 (412)
6 2de6_A Terminal oxygenase comp 100.0 1.6E-45 5.6E-50 380.0 27.9 311 87-436 22-376 (392)
7 3gcf_A Terminal oxygenase comp 100.0 3.6E-42 1.2E-46 350.4 28.5 319 81-435 22-379 (394)
8 3gkq_A Terminal oxygenase comp 100.0 3.3E-41 1.1E-45 342.4 26.7 314 86-435 24-376 (389)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 4.6E-40 1.6E-44 345.4 19.2 195 67-268 13-217 (454)
10 2b1x_A Naphthalene dioxygenase 100.0 2.8E-39 9.6E-44 340.7 21.4 197 65-268 19-226 (470)
11 3gzx_A Biphenyl dioxygenase su 100.0 8.2E-40 2.8E-44 342.1 8.3 198 66-268 32-244 (457)
12 1uli_A Biphenyl dioxygenase la 100.0 7.8E-38 2.7E-42 328.8 18.2 193 67-267 31-234 (460)
13 2bmo_A Oxygenase-alpha NBDO; n 100.0 5.3E-39 1.8E-43 336.7 6.8 195 67-268 11-216 (447)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 5.1E-27 1.7E-31 197.2 14.3 101 92-209 2-103 (103)
15 1vm9_A Toluene-4-monooxygenase 99.9 5.3E-27 1.8E-31 199.8 12.8 103 93-212 1-105 (111)
16 1fqt_A Rieske-type ferredoxin 99.9 7.8E-27 2.7E-31 199.1 13.8 104 92-212 4-109 (112)
17 3dqy_A Toluene 1,2-dioxygenase 99.9 4E-27 1.4E-31 198.9 11.6 102 93-211 1-103 (106)
18 2i7f_A Ferredoxin component of 99.9 4E-27 1.4E-31 199.5 10.9 102 93-211 3-106 (108)
19 2de6_D Ferredoxin component of 99.9 7.1E-27 2.4E-31 200.4 12.3 104 92-212 3-108 (115)
20 2jza_A Nitrite reductase [NAD( 99.9 9.5E-27 3.3E-31 203.9 12.0 107 92-214 2-114 (130)
21 2jo6_A Nitrite reductase [NAD( 99.9 1.4E-26 4.7E-31 197.8 12.2 103 92-210 5-113 (113)
22 3gce_A Ferredoxin component of 99.9 2.7E-26 9.2E-31 198.6 13.4 104 92-212 9-115 (121)
23 3d89_A Rieske domain-containin 99.9 3.7E-27 1.3E-31 213.1 8.1 119 90-213 13-138 (157)
24 3c0d_A Putative nitrite reduct 99.9 1.6E-26 5.6E-31 199.3 11.1 105 92-212 4-113 (119)
25 4aiv_A Probable nitrite reduct 99.9 1.9E-26 6.6E-31 198.8 9.4 103 92-210 8-117 (119)
26 1rie_A Rieske iron-sulfur prot 99.8 2.8E-21 9.4E-26 168.9 11.3 98 92-206 4-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 1.7E-21 5.7E-26 172.4 8.1 102 91-209 19-124 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 1.1E-20 3.7E-25 166.0 11.3 99 92-207 6-119 (133)
29 4aay_B AROB; oxidoreductase, r 99.8 1.4E-19 4.8E-24 165.7 9.5 99 93-207 50-161 (175)
30 3azc_A Cytochrome B6-F complex 99.7 5.2E-21 1.8E-25 167.5 0.0 102 92-210 14-120 (133)
31 3cx5_E Cytochrome B-C1 complex 99.7 1.2E-17 4.1E-22 154.4 12.4 98 91-206 60-184 (185)
32 1pp9_E Ubiquinol-cytochrome C 99.7 6.5E-18 2.2E-22 157.3 10.6 94 97-206 75-195 (196)
33 2nwf_A Ubiquinol-cytochrome C 99.7 1E-17 3.4E-22 148.2 11.1 94 98-206 6-140 (141)
34 2qjy_C Ubiquinol-cytochrome C 99.7 1.2E-17 4.2E-22 154.6 12.1 99 93-206 48-186 (187)
35 1nyk_A Rieske iron-sulfur prot 99.7 1.4E-17 4.7E-22 151.2 8.9 98 99-212 26-150 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 3.9E-18 1.3E-22 157.1 -0.3 92 100-208 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 5.1E-16 1.7E-20 145.4 3.5 86 108-208 55-166 (204)
38 2bmo_A Oxygenase-alpha NBDO; n 38.4 93 0.0032 31.4 8.7 58 334-395 314-373 (447)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=5.9e-53 Score=429.10 Aligned_cols=310 Identities=21% Similarity=0.325 Sum_probs=235.8
Q ss_pred ccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCC
Q 012708 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (458)
Q Consensus 89 ~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~ 168 (458)
.+++.|++||+++|| +|+++.++++|++|+|||+ .+|+++|+.|+|||||++|+.|.+. ++.|+||||||+||++|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQ-PDGVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEc-CCCcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCC
Confidence 458999999999999 8999999999999999998 8999999999999999999999986 789999999999999999
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceEEEEEEEecChhh
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDT 248 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~nwk~ 248 (458)
|+.+|+... . .+...+|++|||++++|+||||+++++.+ +...+|.++ ++++++|......++++||||.
T Consensus 81 ~~~~P~~~~--~-----~~~~~~l~~~~v~~~~G~V~v~~~~~~~~--~~~~~p~~~-~~~~~~~~~~~~~~~~~~nwk~ 150 (349)
T 3gke_A 81 CVHNPHGNG--A-----RPASLNVRSFPVVERDALIWIWPGDPALA--DPGAIPDFG-CRVDPAYRTVGGYGHVDCNYKL 150 (349)
T ss_dssp EEECCSTTC--C-----CCGGGCCCBCCEEEETTEEEECCSCGGGC--CGGGSCCCG-GGGCTTSEEEEEEEEESSCHHH
T ss_pred ccccCcccc--c-----cccccccceeeEEEECCEEEEeeCCCCCC--cccccCCcc-ccCCCCCEEEeEEEEEecCHHh
Confidence 999996221 1 13467899999999999999999886522 222345566 6666778766567789999999
Q ss_pred hhhhccCCCcccccccccccCcCCCCCccEEEeecCccceeee---------------c---CCC-C-cEEEEEEcceee
Q 012708 249 LMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGA---------------N---DGN-P-RISAKFVAPCYY 308 (458)
Q Consensus 249 ~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~gf~~~---------------~---~~~-~-~~~~~f~~P~~~ 308 (458)
++||++|+||++++|+++++..+.... +++++..+ .++... . ++. . ...++|..||+.
T Consensus 151 ~~EN~~D~~H~~~~H~~~~~~~~~~~~-~~~v~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~ 228 (349)
T 3gke_A 151 LVDNLMDLGHAQYVHRANAQTDAFDRL-EREVIVGD-GEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAM 228 (349)
T ss_dssp HHHHHHCGGGHHHHTHHHHCCTTGGGC-EEEEEECS-SEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEE
T ss_pred HHHhccccccchhccchhhcCccccCC-CCEEEEcC-CEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEE
Confidence 999999999999999999987664422 23444322 222110 0 111 1 135789999997
Q ss_pred eEEEEE-cccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhccccccc-chhHHHH
Q 012708 309 MNKIEI-DTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVY-DGDMIVL 386 (458)
Q Consensus 309 ~~~~~~-~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~-~eD~~vl 386 (458)
...+.+ ..+.| .....++++++++||+++++||++|.++|||.. .++ .+...|.. +..+|| +||+.||
T Consensus 229 ~~~~~~~~~g~p--~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~---~d~---~~~~~~~~--~~~~if~~ED~~il 298 (349)
T 3gke_A 229 LNFIAVAPEGTP--KEQSIHSRGTHILTPETEASCHYFFGSSRNFGI---DDP---EMDGVLRS--WQAQALVKEDKVVV 298 (349)
T ss_dssp EEEEEEEETTSC--GGGSEEEEEEEEEEEEETTEEEEEEEEEESSST---TCH---HHHHHHHH--HHHHHTTTHHHHHH
T ss_pred EEEEecccCCCC--CCCceEEEEEEEEecCCCCeEEEEEEEEecCcc---Cch---hhhHHHHH--HHhhhhhhhhHHHH
Confidence 765544 22222 122345667788899999999999999999853 111 12234433 467898 9999999
Q ss_pred hhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHhc
Q 012708 387 QGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (458)
Q Consensus 387 e~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~ 433 (458)
|+||+++...+.. ...++++++|+++++|||||+++.
T Consensus 299 e~Qq~~l~~~~~~----------~~~~~~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 299 EAIERRRAYVEAN----------GIRPAMLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp HHHHHTHHHHHHT----------TCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCcc----------ccccccccccHHHHHHHHHHHHHH
Confidence 9999998764311 123578999999999999999885
No 2
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3.9e-46 Score=390.57 Aligned_cols=336 Identities=18% Similarity=0.250 Sum_probs=230.1
Q ss_pred CccccCCCccCccccc--cccccccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCc
Q 012708 66 DEKEDYGSLVDDEYGK--ESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPL 143 (458)
Q Consensus 66 ~~~~~~~~y~~~~~~~--~e~~~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L 143 (458)
..++|.+ +|+++++ .|++ ++|++.|++||++++|++|+++.++++|++|||+|. +|+++|+.|+|||||++|
T Consensus 18 ~~~~p~~--~~~~~~~~~~e~~--~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r~--~G~v~a~~n~CpHrga~L 91 (446)
T 1z01_A 18 DARANNA--KTQSQYQPYKDAA--WGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRV--NGKVFALKDQCLHRGVRL 91 (446)
T ss_dssp TTSSSCH--HHHGGGHHHHHCT--TCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCG
T ss_pred cccCCcc--cCHHHhhhhhhhh--hhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCcCCC
Confidence 3456777 9999999 7754 477999999999999998999999999999999995 899999999999999999
Q ss_pred CCccc-cCCCeEEcCCCCeEEcC-CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc-----cccc
Q 012708 144 SEGRI-DENGHLQCSYHGWSFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG-----QERA 216 (458)
Q Consensus 144 ~~G~~-~~~~~l~CpyHGw~Fd~-~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~-----~~~~ 216 (458)
+.|.+ .+++.|+||||||+||+ +|+|+.+|+.+... .+...+|++|||++++|+||||+++++ .+.+
T Consensus 92 ~~g~~~~~~~~i~CpyHgw~fd~~~G~~~~~p~~p~~~------~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l 165 (446)
T 1z01_A 92 SEKPTCFTKSTISCWYHGFTFDLETGKLVTIVANPEDK------LIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPL 165 (446)
T ss_dssp GGSCCCSSTTEEECTTTCEEEETTTCBEEEETTCTTCT------TTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCG
T ss_pred CCCccCCCCCEEEeCCCCeEEeCCCCCccccCCCcccc------CcccCCCcEEEEEEECCEEEEEeCCccccccCCCCh
Confidence 99974 24689999999999998 99999998754321 245678999999999999999998642 1112
Q ss_pred ccCCCCCCCC--------------CCCCCCCceEEEEEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEE--
Q 012708 217 NATKPPMLPD--------------AFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKL-- 280 (458)
Q Consensus 217 ~~~~~p~~p~--------------~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~-- 280 (458)
.+.+++.+++ .+.+.++.......+++||||+++||++|+||+ ++|+++++..+......+.+
T Consensus 166 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~ 244 (446)
T 1z01_A 166 AHDLPFRFPERSEQFPHPLWPSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLP 244 (446)
T ss_dssp GGGSCCCTTTTTTTSCCTTSCCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEE
T ss_pred hHhccchhhhhhhccccccccccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccc
Confidence 2233322321 222344544444568999999999999999999 99999875432211111111
Q ss_pred --------ee--cCccceeee-------------------cCCC-CcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEE
Q 012708 281 --------ES--SGHWGFAGA-------------------NDGN-PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWI 330 (458)
Q Consensus 281 --------~~--~~~~gf~~~-------------------~~~~-~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i 330 (458)
.. .+..|+... ..+. ......+.+|++++... .| ... +.+
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~-----~p--~~~---~~~ 314 (446)
T 1z01_A 245 TSDDCIAVVEDDDGPKGMMQWLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN-----WP--EEH---VVQ 314 (446)
T ss_dssp CSTTSEEEECCSSSCCEEEECTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET-----CS--STT---CEE
T ss_pred cCCCceeEEEecCCCCEEEEEecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec-----cC--CCC---eEE
Confidence 00 011121100 0011 11245677898875421 11 112 234
Q ss_pred EEEEeecCCCeEEEEEEeeccccccCCCCcccccch---hhhhhhcccccccchhHHHHhhhhHHHhhhcccCCcccccc
Q 012708 331 CSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVV---PRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKE 407 (458)
Q Consensus 331 ~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~---~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~ 407 (458)
+..++|+++++|++++.+++++.. .......+ ..++.......++.||+.++|+||+++.... .
T Consensus 315 ~~~~~Pi~~~~t~~~~~~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~---------~ 381 (446)
T 1z01_A 315 YEWYVPITDDTHEYWEILVRVCPT----DEDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGT---------G 381 (446)
T ss_dssp EEEEEESSSSEEEEEEEEEEECCS----HHHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSH---------H
T ss_pred EEEEEECCCCcEEEEEEEecCCCC----HHHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhcccc---------c
Confidence 456799999999999888877631 11111111 1121122234577999999999999875421 1
Q ss_pred ccccccccCcccHHHHHHHHHHHHhcCCCCCC
Q 012708 408 YTKITFTPTQADRLVLAFRNWLRRHGNSQPEW 439 (458)
Q Consensus 408 ~~~~~~~~~~aD~~v~afRrwl~~~~~~~p~w 439 (458)
|.+ +++..+|+++++||||++++..+.-.+
T Consensus 382 ~~~--~~l~~~D~~i~~~Rr~l~~~~~~~~~~ 411 (446)
T 1z01_A 382 WDD--EQLVATDISPITWRKLASRWNRGIAKP 411 (446)
T ss_dssp HHH--CCCCGGGHHHHHHHHHHHHHCSCBCCC
T ss_pred ccc--ccCchhhHHHHHHHHHHHHHHhhccCc
Confidence 211 457789999999999999997775444
No 3
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=2.7e-47 Score=394.08 Aligned_cols=325 Identities=16% Similarity=0.165 Sum_probs=231.5
Q ss_pred CccccCCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcC
Q 012708 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (458)
Q Consensus 66 ~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~ 144 (458)
...||.++|+|+++++.|++. +|++.|++||++++|+ +|++++++++|++|+|+|+ .+|+++||.|+|||||++|+
T Consensus 16 ~~~lp~~~Y~d~~~~~~E~~~--if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~C~Hrga~L~ 92 (409)
T 3n0q_A 16 GHALDQAFYTDAEVFQTDLQE--IFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRG-ADNVIRAFHNACRHRGSVIC 92 (409)
T ss_dssp TBCCCHHHHHCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSC
T ss_pred cccCCHHHcCCHHHHHHHHHH--HHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEeecCcCCcCcCCcc
Confidence 457899999999999999866 6699999999999998 5999999999999999998 89999999999999999999
Q ss_pred C-ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCC
Q 012708 145 E-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPM 223 (458)
Q Consensus 145 ~-G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~ 223 (458)
. |.+. ++.|+||||||+||++|+|+.+|+.... +++++.+|++|+|++++|+|||++++++++ +++++.+
T Consensus 93 ~~g~~~-~~~i~CpyHgw~fd~dG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~-l~~~l~~- 163 (409)
T 3n0q_A 93 KAKKGN-NPKLVCPYHQWTYELDGRLLWARDMGPD------FEPSRHGLKTVHCRELAGLIYICLADEAPD-FERFAEV- 163 (409)
T ss_dssp CSSEEE-CSSEECTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCC-CHHHHHH-
T ss_pred CcCccC-CCEEEECCCCCEEeCCCCcccCCcCCcc------cCcccCCCceEEEEEECCEEEEEeCCCCCC-hHHhhhh-
Confidence 6 7664 6799999999999999999999975321 134577899999999999999999887643 2222211
Q ss_pred CCCCCC---CCCCceE-EEEEEEecChhhhhhhccCCCcccccccccccCcCC--------------------------C
Q 012708 224 LPDAFD---KPEFSSV-TIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDR--------------------------A 273 (458)
Q Consensus 224 ~p~~~~---~~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~--------------------------~ 273 (458)
+.+.++ ..++... ...++++||||+++||++|+||++++|+++++.... +
T Consensus 164 ~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 243 (409)
T 3n0q_A 164 ARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAG 243 (409)
T ss_dssp HHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTT
T ss_pred hhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccC
Confidence 111222 2233322 245778999999999999999999999998763210 0
Q ss_pred CCc--------cEEEeecCc----cceee--e----------cCCCCcEEEEEEcceeeeEEEEEcccCcccCCCcEEEE
Q 012708 274 KPL--------PFKLESSGH----WGFAG--A----------NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIW 329 (458)
Q Consensus 274 ~~~--------~~~~~~~~~----~gf~~--~----------~~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~ 329 (458)
.+. .+.+..... ..+.. . ..........+++||++++.. .+ .+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------pd----~~ 310 (409)
T 3n0q_A 244 MPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL---------SD----HS 310 (409)
T ss_dssp CCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC---------SS----CE
T ss_pred CcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC---------CC----EE
Confidence 010 111111000 00100 0 001112346789999987642 22 13
Q ss_pred EEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCcccccccc
Q 012708 330 ICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYT 409 (458)
Q Consensus 330 i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~ 409 (458)
+++.+.|+++++|++.+.+++.-.. +.+.++. +..+.. +...|..||..|+|.+|+++.+.. |.
T Consensus 311 ~~~~~~P~~p~~t~~~~~~~~~~~~--~~~~d~~--~~~~~~--~~~~~~~ED~~l~e~~Q~G~~s~~----------y~ 374 (409)
T 3n0q_A 311 IVFRVTPISPTETEVTTKWLVHKDA--VEGVDYD--LQRLTE--VWIATNDEDREVVEFNQMGINSPA----------YE 374 (409)
T ss_dssp EEEEEEEEETTEEEEEEEEEEETTC--CBTTTBC--HHHHHH--HHHHHHHHHHHHHHHHHHHHTSTT----------CC
T ss_pred EEEEEEECCCCeEEEEEEEEEcCcc--cccchhh--HHHHHH--HHHHHHHHHHHHHHHHhhhhcCCC----------CC
Confidence 3456789999999999876654321 1111221 122111 346788999999999999998865 44
Q ss_pred ccccccCcccHHHHHHHHHHHHh
Q 012708 410 KITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 410 ~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
.|++.+ ..|.++..|.+|+.+.
T Consensus 375 ~G~~s~-~~E~~v~~F~~w~~~~ 396 (409)
T 3n0q_A 375 PGPYSP-TQESGVLQFVEWYLST 396 (409)
T ss_dssp CCBCCT-TTSHHHHHHHHHHHHH
T ss_pred CCCCCC-CccHhHHHHHHHHHHH
Confidence 666654 3699999999999876
No 4
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.5e-46 Score=385.11 Aligned_cols=310 Identities=19% Similarity=0.296 Sum_probs=216.0
Q ss_pred ccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCC
Q 012708 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (458)
Q Consensus 89 ~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~ 168 (458)
+|.+.|++||++++|++|+++.++++|++|||||+ .+|+++|+.|+|||||++|+.|.+. ++.|+||||||+||++|+
T Consensus 21 ~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~~G~v~a~~n~CpHrga~L~~g~~~-~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 21 RYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SHGDLKVLDGYCRHMGGDLSEGTVK-GDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp SCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBGGGSEEE-TTEEECTTTCCEEETTSB
T ss_pred hhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcCcCCCCCCCCCCCccc-CCEEEeCCCCCEECCCCC
Confidence 56789999999999999999999999999999998 8999999999999999999999986 679999999999999999
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceE-EEEEEEe-cCh
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSV-TIQRDLF-YGY 246 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~~~~-~nw 246 (458)
|+.+|+.... +...+|++|||++++|+||||+++++.+...+..+|.++ .+++++|... ....+++ |||
T Consensus 99 ~~~~P~~~~~--------~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~nw 169 (386)
T 2zyl_A 99 CKLVPYARRT--------PRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIP-EAASDEWTDWRWNRILIEGSNC 169 (386)
T ss_dssp EEECTTCSSC--------CTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCG-GGGCTTBCCCEEEEEEEESSCG
T ss_pred ccccCccccc--------CcccCcceEeEEEECCEEEEEECCccCCCcccccCcccc-cccCCCceEEEEEEEEEcCcCH
Confidence 9999986432 345789999999999999999987643222334456566 6666666643 3467888 999
Q ss_pred hhhhhhccCCCcccccccccccCcC--CCCCccEE-EeecCcccee--eecCCCC--cEEEEEEcceeeeEEEEEcccCc
Q 012708 247 DTLMENVSDPSHIDFAHHKVTGRRD--RAKPLPFK-LESSGHWGFA--GANDGNP--RISAKFVAPCYYMNKIEIDTKLP 319 (458)
Q Consensus 247 k~~~EN~~D~~H~~~vH~~~~~~~~--~~~~~~~~-~~~~~~~gf~--~~~~~~~--~~~~~f~~P~~~~~~~~~~~~~p 319 (458)
|.++||++|+||++++|+++.+... .......+ +...+...+. +...+.. .....|+.|+++++.+....
T Consensus 170 k~~~EN~~D~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~--- 246 (386)
T 2zyl_A 170 RDIIDNVTDMAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRY--- 246 (386)
T ss_dssp GGGGGGGGCSTHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEE---
T ss_pred HhHhhhcccccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeecc---
Confidence 9999999999999999998743210 00000000 0000000000 0000111 12367889998876543221
Q ss_pred ccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHhhhhHHHhhhccc
Q 012708 320 VVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLME 399 (458)
Q Consensus 320 ~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~ 399 (458)
.|. ....++++.++|+++++|++++.+++++.. ..++... ..+.+.+. .+...+|.||+.|++.|++...
T Consensus 247 -~g~-~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~~vf~ED~~I~e~q~~~~~----- 316 (386)
T 2zyl_A 247 -GNY-KSESILINCHYPVTQNSFVLQWGVIVEKPK-GMSEEMT-DKLSRVFT-EGVSKGFLQDVEIWKHKTRIDN----- 316 (386)
T ss_dssp -TTE-EEEEEEEEEEEEEETTEEEEEEEEEEBCCC-CCC--CT-HHHHHHHH-HHHHHHHHHHHHHHTTCCCCSS-----
T ss_pred -CCc-ceeEEEEEEEEEccCCEEEEEEEEEEecCC-CCChhhH-HHHHHHHH-HHHHHhhHHHHHHHHhcccccC-----
Confidence 121 112334456799999999999987766521 1111100 11111111 1356789999999999864211
Q ss_pred CCccccccccccccccCcccHHHHHHHHHHHHhcCC
Q 012708 400 GSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNS 435 (458)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~~ 435 (458)
.++...|+++++||||++++...
T Consensus 317 -------------p~~~~~D~~~~~fRrw~~~~~~~ 339 (386)
T 2zyl_A 317 -------------PLLVEEDGAVYQLRRWYEQFYVD 339 (386)
T ss_dssp -------------CCCCGGGCSHHHHHHHHHGGGSC
T ss_pred -------------CccCcccHHHHHHHHHHHHhCCc
Confidence 23567899999999999998554
No 5
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=4.2e-47 Score=392.96 Aligned_cols=325 Identities=14% Similarity=0.172 Sum_probs=231.4
Q ss_pred CccccCCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcC
Q 012708 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (458)
Q Consensus 66 ~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~ 144 (458)
...||.++|+|+++++.|++. +|++.|++||++++|+ +|+++.++++|++|+|+|+ .+|+++||.|+|||||++|+
T Consensus 18 ~~~lp~~~Y~d~~~~~~E~~~--if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~CpHrga~L~ 94 (412)
T 3vca_A 18 GFSLEQPFYTSPEVYALDLQH--IFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRS-RDGEVRAFHNSCRHRGSLIC 94 (412)
T ss_dssp TBCCCHHHHHCHHHHHHHHHH--TTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSC
T ss_pred cCcCCHHHcCCHHHHHHHHHH--HHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEEecccCCCCCCEee
Confidence 457899999999999999866 6699999999999998 5999999999999999998 89999999999999999998
Q ss_pred -CccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCC
Q 012708 145 -EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPM 223 (458)
Q Consensus 145 -~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~ 223 (458)
.|.+. ++.|+||||||+||++|+|+.+|+.... +++++.+|++|+|++++|+|||++++++++ +++++.+
T Consensus 95 ~~g~~~-~~~i~CPyHgw~fdldG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~-l~~~l~~- 165 (412)
T 3vca_A 95 KARQGQ-VAKLVCPYHQWTYELDGKLIWANDMGPD------FDASKYGLKPVNLRNLDGLIYICLSDTPPD-FQTFAQL- 165 (412)
T ss_dssp CSSEEE-CSSEECTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCC-CHHHHHH-
T ss_pred cccccC-CCEEEcCCCCCEEcCCCccccCCccccc------cCcccCCCcEEEEEEECCEEEEEecCCCCC-HHHHhhh-
Confidence 67775 6799999999999999999999975321 134567899999999999999999887643 2222211
Q ss_pred CCCCCCC---CCCceE-EEEEEEecChhhhhhhccCCCcccccccccccCcCC---------------------------
Q 012708 224 LPDAFDK---PEFSSV-TIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDR--------------------------- 272 (458)
Q Consensus 224 ~p~~~~~---~~~~~~-~~~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~--------------------------- 272 (458)
+...++. .++... ...++++||||+++||++|+||++++|+++++....
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
T 3vca_A 166 ARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAA 245 (412)
T ss_dssp HHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHT
T ss_pred hHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhcc
Confidence 1112222 223322 345788999999999999999999999998653210
Q ss_pred CCCccE--------EEeecCc----ccee--ee----------cCCCCcEEEEEEcceeeeEEEEEcccCcccCCCcEEE
Q 012708 273 AKPLPF--------KLESSGH----WGFA--GA----------NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWII 328 (458)
Q Consensus 273 ~~~~~~--------~~~~~~~----~gf~--~~----------~~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~ 328 (458)
+.+..+ .+..... ..+. +. ..........+++||++++.. .+.
T Consensus 246 g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------pd~---- 312 (412)
T 3vca_A 246 GTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL---------PDH---- 312 (412)
T ss_dssp TCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC---------SSC----
T ss_pred CCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC---------CCE----
Confidence 001011 1110000 0010 00 001112346789999987632 221
Q ss_pred EEEEEEeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccc
Q 012708 329 WICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEY 408 (458)
Q Consensus 329 ~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~ 408 (458)
++++.+.|+++++|++.+.+++.-.. +.+.+.. +..+.. +.+.|..||..|+|.+|+++.+.. |
T Consensus 313 ~~~~~~~P~~~~~t~v~~~~~~~~d~--~~~~d~~--~~~~~~--~~~~~~~ED~~l~e~~Q~G~~S~~----------y 376 (412)
T 3vca_A 313 SLTFRVMPISPTETEVTTTWLVHKDA--VEGVDYD--LKRLTE--VWIATNDEDREIVETNQQGILSPA----------Y 376 (412)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTC--CBTTTBC--HHHHHH--HHHHHHHHHHHHHHHHHHHHTSTT----------C
T ss_pred EEEEEEEECCCCeEEEEEEEEEcccc--ccCccHH--HHHHHH--HHHHHHHHHHHHHHHhhhhhcCCC----------C
Confidence 33456789999999998766644321 1111211 222211 356789999999999999998865 4
Q ss_pred cccccccCcccHHHHHHHHHHHHh
Q 012708 409 TKITFTPTQADRLVLAFRNWLRRH 432 (458)
Q Consensus 409 ~~~~~~~~~aD~~v~afRrwl~~~ 432 (458)
..|++.+ ..|.++..|.+|+.+.
T Consensus 377 ~~G~~sp-~~E~~v~~F~~w~~~~ 399 (412)
T 3vca_A 377 VPGPYSP-GQESGVMQFVDWYAAS 399 (412)
T ss_dssp CCCBCCT-TTCHHHHHHHHHHHHH
T ss_pred CCCCCCC-CcchhHHHHHHHHHHH
Confidence 4666644 3599999999999865
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.6e-45 Score=379.98 Aligned_cols=311 Identities=17% Similarity=0.291 Sum_probs=214.7
Q ss_pred ccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCcccc-CCCeEEcCCCCeEEcC
Q 012708 87 KFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID-ENGHLQCSYHGWSFDG 165 (458)
Q Consensus 87 ~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~-~~~~l~CpyHGw~Fd~ 165 (458)
+.+|++.|++||++++|++|+++.++++|++|||||+ +|+++|+.|+|||||++|+.|.+. +++.|+||||||+||+
T Consensus 22 ~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~--~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~~ 99 (392)
T 2de6_A 22 KLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI--DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYRW 99 (392)
T ss_dssp TTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEET
T ss_pred hhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEcC
Confidence 4578999999999999998999999999999999995 899999999999999999999863 3579999999999998
Q ss_pred -CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceEEEEEEEec
Q 012708 166 -CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFY 244 (458)
Q Consensus 166 -~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 244 (458)
+|+|+.+|+.+... .+++.+|++|||++++|+|||+++++..+.+.+ .+++++.++++.......+++|
T Consensus 100 ~~G~~~~~p~~p~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~ 169 (392)
T 2de6_A 100 EDGVLCDILTNPTSA------QIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLAR----DTPPNFLDDDMEILGKNQIIKS 169 (392)
T ss_dssp TTCBEEEETTCTTCT------TTTSCBCCBCCEEEETTEEEEEESSSSCCCGGG----GSCTTTTCTTEEEEEEEEEESS
T ss_pred CCCccccccCCcccc------ccccCCCceEeEEEECCEEEEEeCCCCCCChhH----hccccccCCCeEEEEEEEEEec
Confidence 99999998764321 245678999999999999999997643221221 2322555566665555678999
Q ss_pred ChhhhhhhccCCCcccccccccccCcCCCC-------------CccEEEeecC--ccceeee------------cC----
Q 012708 245 GYDTLMENVSDPSHIDFAHHKVTGRRDRAK-------------PLPFKLESSG--HWGFAGA------------ND---- 293 (458)
Q Consensus 245 nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~-------------~~~~~~~~~~--~~gf~~~------------~~---- 293 (458)
|||.++||++|+||+ ++|+++++..+... ...++++... ..|+... ..
T Consensus 170 nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~ 248 (392)
T 2de6_A 170 NWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVV 248 (392)
T ss_dssp CHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEE
T ss_pred ChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCcccccccccccccee
Confidence 999999999999999 99999865422110 1122232110 1111100 00
Q ss_pred -----CC--CcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccccc-
Q 012708 294 -----GN--PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQV- 365 (458)
Q Consensus 294 -----~~--~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~- 365 (458)
+. ......+.+|+++... . .| +.. +.++..++|+++++|++++.++|++.. .......
T Consensus 249 ~~~~~g~~~~~~~~~~~~P~~~~~~--~---~p--~~~---~~~~~~~~Pi~~~~t~~~~~~~~~~~~----~~~~~~~~ 314 (392)
T 2de6_A 249 REGAYGEKIVANDISIWLPGVLKVN--P---FP--NPD---MMQFEWYVPIDENTHYYFQTLGKPCAN----DEERKKYE 314 (392)
T ss_dssp EECEECSBCCCCEEEEETTTEEEEE--S---CS--STT---CEEEEEEEEEETTEEEEEEEEEEECSS----HHHHHHHH
T ss_pred eccccCCcccceeEEEecccceecc--c---cC--CCC---EEEEEEEeecCCCcEEEEEEEecCCCC----HHHHHHHH
Confidence 00 1123455577765321 1 11 112 223456799999999999988887631 1111010
Q ss_pred ---hhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHhcCCC
Q 012708 366 ---VPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQ 436 (458)
Q Consensus 366 ---~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~~~ 436 (458)
...|.. .....++.||+.++|+||+.+.... .|.+ .++.++|+++++|||||++++.+.
T Consensus 315 ~~~~~~~~~-~~~~~~~~qD~~i~e~qq~~~~~~~---------~~~~--e~~~~~D~~~~~~Rr~l~~~~~~~ 376 (392)
T 2de6_A 315 QEFESKWKP-MALEGFNNDDIWAREAMVDFYADDK---------GWVN--EILFESDEAIVAWRKLASEHNQGI 376 (392)
T ss_dssp HHHHHTHHH-HTTTTTTHHHHHHHHHTHHHHHTST---------HHHH--CCCCGGGHHHHHHHHHHHHHCSCB
T ss_pred HHHHHHHHH-hhccCCChhhHHHHHhhhhhhhccc---------cCcc--ceecchhHHHHHHHHHHHHHhhhh
Confidence 111111 1234678999999999999775421 1211 356789999999999999997663
No 7
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=3.6e-42 Score=350.39 Aligned_cols=319 Identities=18% Similarity=0.305 Sum_probs=224.4
Q ss_pred ccccccccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccc-cCCCeEEcCCC
Q 012708 81 KESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYH 159 (458)
Q Consensus 81 ~~e~~~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~-~~~~~l~CpyH 159 (458)
+...+.+++|++.|++||+++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.+ ..++.|+||||
T Consensus 22 ~~yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyH 99 (394)
T 3gcf_A 22 PRYLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA--KGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYH 99 (394)
T ss_dssp HHHHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTT
T ss_pred hhhhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCC
Confidence 4444456788999999999999999999999999999999995 89999999999999999999973 24679999999
Q ss_pred CeEEcC-CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceEEE
Q 012708 160 GWSFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTI 238 (458)
Q Consensus 160 Gw~Fd~-~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 238 (458)
||+||+ +|+|+.+|+.+... .+...+|++|||++++|+|||++++++.+.+.+ .+++.+.+.++.....
T Consensus 100 GW~Fdl~dG~cv~iP~~p~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e----~L~~~~~d~~~~~~~~ 169 (394)
T 3gcf_A 100 GWTYDLDDGRLVDVLTSPGSP------VIGKIGIKVYPVQVAQGVVFVFIGDEEPHALSE----DLPPGFLDEDTHLLGI 169 (394)
T ss_dssp CEEEETTTCBEEEETTSTTCT------TTTSCBCCEECEEEETTEEEEEESSSCCCCGGG----GSCTTTTCTTEEEEEE
T ss_pred CcEEECCCCceeccCCCcccc------cccccCceEEEEEEECCcEEEecCCCCCCCchh----hcchhhcCCceEEEeE
Confidence 999999 89999999765421 245678999999999999999997543222222 2333455566665556
Q ss_pred EEEEecChhhhhhhccCCCcccccccccccCcCCCCCccEEEeecCccceeeec--------------------------
Q 012708 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGAN-------------------------- 292 (458)
Q Consensus 239 ~~~~~~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~gf~~~~-------------------------- 292 (458)
..+++||||.++||++|.||+ ++|+++++..+......+.+...+..++.+..
T Consensus 170 ~~~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~pv~~~~~~~~ 248 (394)
T 3gcf_A 170 RRTVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVYDENWPKGVLDRLSENYMPVFEATLDGE 248 (394)
T ss_dssp EEEESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEECSSSSCEEEECHHHHEEEECEEEETTE
T ss_pred EEEEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCceEEeccCCCCcchhhhhhcccccccccccccc
Confidence 678999999999999999999 99999987654444444444332111111110
Q ss_pred -------CCC---CcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCccc
Q 012708 293 -------DGN---PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAW 362 (458)
Q Consensus 293 -------~~~---~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~ 362 (458)
.+. ......+..|++.... .. +...+ .....++|+++++++++..+++...... ...+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~s~~lP~v~~v~-----~~---p~~~~--~~~~~~vPid~~~~~~~~~~~~~~~~~~-~~~~~ 317 (394)
T 3gcf_A 249 TVLSAELTGEEKKVAAQVSVWLPGVLKVD-----PF---PDPTL--IQYEFYVPISETQHEYFQVLQRKVEGPE-DVKTF 317 (394)
T ss_dssp EEEECCCCSSCBCCCSEEEEETTTEEEEE-----SC---SSTTC--EEEEEEEESSSSCEEEEEEEEEECSSHH-HHHHH
T ss_pred ccccccccCcccccceeEEEEecCeeEec-----cC---CCCCe--EEEEEEeeccCCeEEEEEEEEEECCCHH-HHHHH
Confidence 011 1134667777765432 11 22122 2224569999999999988776652200 00112
Q ss_pred c-cchhhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHhcCC
Q 012708 363 W-QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNS 435 (458)
Q Consensus 363 ~-~~~~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~~ 435 (458)
. +.-.+|..+ ..+..+++|+.+-|++|.=+.+.. .|.. ......|..|+++||...++..|
T Consensus 318 ~~~~~~~~~~~-~~~~f~~~d~~ar~~~~~~y~~~~---------g~~~--e~l~~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 318 EVEFEERWRDD-ALHGFNDDDVWAREAQQEFYGERD---------GWSK--EQLFPPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp HHHHHHTHHHH-TTTTTTHHHHHHHHHHHHHHHHSC---------HHHH--CCCCGGGHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHhHHH-hhcccchhhHHHHHHHHHhhcccC---------CCCh--hhccCcchhHHHHHHHHHHhccc
Confidence 1 111233222 246778999999999998776532 2443 34677899999999999999655
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=3.3e-41 Score=342.42 Aligned_cols=314 Identities=20% Similarity=0.327 Sum_probs=219.0
Q ss_pred cccccCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccc-cCCCeEEcCCCCeEEc
Q 012708 86 SKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGWSFD 164 (458)
Q Consensus 86 ~~~~~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~-~~~~~l~CpyHGw~Fd 164 (458)
.+.+|++.|++||+++||++|+++.++++|++|+|+|. +|+++|+.|+|||||++|+.|.+ .+++.|+||||||+||
T Consensus 24 ~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 24 AKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNRV--DGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp CTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 45578999999999999999999999999999999994 89999999999999999999973 2367999999999999
Q ss_pred C-CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCCCCCCCCCCceEEEEEEEe
Q 012708 165 G-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLF 243 (458)
Q Consensus 165 ~-~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 243 (458)
+ +|+|+.+|+.+... .+...+|++|||++++|+|||+++++..+.+.+ .+++.+.+.++.......+++
T Consensus 102 l~dG~cv~iP~~P~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL~e----~l~~~~~~~~~~~~~~~~~i~ 171 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSV------QIGRHALKTYPVREEKGLVFLFVGDQEPHDLAE----DVPPGFLDADLAVHGQHRVVD 171 (389)
T ss_dssp TTTCBEEEETTCTTCT------TTTSCBCCBCCEEEETTEEEEEESSSCCCCGGG----GSCTTTTCTTEEEEEEEEEES
T ss_pred CCCCCeecccCCcccc------cccccCCcEEEEEEECCeEEEecCCCCCCCchh----hcchhccCCceEEEeEEEEEe
Confidence 9 89999999765421 245678999999999999999997543221222 233345556666555667899
Q ss_pred cChhhhhhhccCCCcccccccccccCcCCCCCccEEE-------------eecCccceeee-------------------
Q 012708 244 YGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKL-------------ESSGHWGFAGA------------------- 291 (458)
Q Consensus 244 ~nwk~~~EN~~D~~H~~~vH~~~~~~~~~~~~~~~~~-------------~~~~~~gf~~~------------------- 291 (458)
||||.++||++|+||+ ++|+++++..+......+.+ +....-|+...
T Consensus 172 ~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~ 250 (389)
T 3gkq_A 172 ANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAI 250 (389)
T ss_dssp SCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEE
T ss_pred cCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccc
Confidence 9999999999999999 99999876543222222221 11112221110
Q ss_pred --cCCC--CcEEEEEEcceeeeEEEEEcccCcccCCCcEEEEEEEEEeecCCCeEEEEEEeeccccccCCCCcccc-cch
Q 012708 292 --NDGN--PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWW-QVV 366 (458)
Q Consensus 292 --~~~~--~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~p~~trv~~~~~R~f~~~~~p~~~~~-~~~ 366 (458)
..+. ....+.+..|++.... . ++...+. ....++|+++++++++..+.+...... ...+|. +.-
T Consensus 251 ~~~~~~~~~~~~~s~~lP~v~~v~---~-----~~~~~~~--~~~~~vpi~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~ 319 (389)
T 3gkq_A 251 QGHMGSKMVAISISVWLPGVLKVD---P-----FPDPTLT--QFEWYVPIDEGHHLYLQMLGRRVGSEE-EARSFEAEFR 319 (389)
T ss_dssp ECBCCSBCCCCEEEEETTTEEEEE---S-----CSSTTCE--EEEEEEEEETTEEEEEEEEEEECSSHH-HHHHHHHHHH
T ss_pred cCCCCCcccceeEEEEecCeeEec---c-----CCCCCeE--EEEEEeeccCCeEEEEEEEEEEcCCHH-HHHHHHHHHH
Confidence 0011 1234677888876532 1 1221222 223569999999999988776652200 001121 111
Q ss_pred hhhhhhcccccccchhHHHHhhhhHHHhhhcccCCccccccccccccccCcccHHHHHHHHHHHHhcCC
Q 012708 367 PRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNS 435 (458)
Q Consensus 367 ~r~~~~~~~~~V~~eD~~vle~qq~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~~v~afRrwl~~~~~~ 435 (458)
.+|..+ ..+..+++|+.+-|++|.=+.+.. .|.. ......|..|+++||...++..|
T Consensus 320 ~~~~~~-~~~~f~~~d~~ar~~~~~~y~~~~---------g~~~--e~l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 320 EKWVEL-ALNGFNDDDILARRSMEPFYADDR---------GWRE--EVLFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp HTHHHH-TTTTTTHHHHHHHHHHHHHHHTSH---------HHHH--CCCCGGGHHHHHHHHHHHHHCSC
T ss_pred HHHHHH-hhccccchhHHHHHHHHHhhccCC---------CCCh--hhccCcchhHHHHHHHHHHhccc
Confidence 223222 245777999999999998776532 2443 34677899999999999999665
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=4.6e-40 Score=345.38 Aligned_cols=195 Identities=14% Similarity=0.247 Sum_probs=156.3
Q ss_pred ccccCCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCC
Q 012708 67 EKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (458)
Q Consensus 67 ~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~ 145 (458)
..||.++|+|+++++.|++. +|.+.|++||++++|+ +|+++.+.++|++|+|+|+ .+|+++||.|+|||||++|+.
T Consensus 13 ~~~~~~~y~~~~~~~~E~~~--if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~ 89 (454)
T 2gbw_A 13 ASQSRQVFWDEDVYALEIER--IFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQ-SDGTFRAFINSCSHRGNQICH 89 (454)
T ss_dssp TEEEGGGGTCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSCC
T ss_pred CccCHHHcCCHHHHHHHHHH--HhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeccCCCCCCCCcc
Confidence 57999999999999999765 6699999999999999 5999999999999999998 899999999999999999999
Q ss_pred ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCC
Q 012708 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP 225 (458)
Q Consensus 146 G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p 225 (458)
|.+++++.|+||||||+||++|+|+.+|+.....+. .+++.+.+|++|+|++++|+|||++++++++ +++++.+ +.
T Consensus 90 g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~-~~~~l~~-~~ 165 (454)
T 2gbw_A 90 ADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHN--SLDKQKLAAKSVRVETYKGFIFGCHDPEAPS-LEDYLGE-FR 165 (454)
T ss_dssp CSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGCCCCEEEEEEETTEEEEECCTTCCC-HHHHHGG-GH
T ss_pred cccCCcCEEEeCCCCCEecCCCCcccCCcccccccc--cCCHhhCCCeeEEEEEECCEEEEEeCCCCCC-HHHHhhh-hH
Confidence 887446799999999999999999999976432110 1234567899999999999999999887543 2222221 11
Q ss_pred CCC----CC--CCCceE--EEEEEEecChhhhhhhc-cCCCccccccccccc
Q 012708 226 DAF----DK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (458)
Q Consensus 226 ~~~----~~--~~~~~~--~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~ 268 (458)
..+ +. .++..+ ....+++||||+++||+ +|+||++++|..+++
T Consensus 166 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 166 YYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp HHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred HHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 011 11 223333 23568899999999999 799999999966543
No 10
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2.8e-39 Score=340.70 Aligned_cols=197 Identities=14% Similarity=0.214 Sum_probs=156.7
Q ss_pred CCccccCCCccCccccccccccccccCCceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCc
Q 012708 65 KDEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPL 143 (458)
Q Consensus 65 ~~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L 143 (458)
+...||.++|+|+++|+.|++. +|.+.|++||++++|++ |+++.++++|++|||+|+ .+|+|+||.|+|||||++|
T Consensus 19 ~~~~lp~~~Ytd~~~~~~E~~~--if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~C~Hrga~L 95 (470)
T 2b1x_A 19 SDWTVPAAIINDPEVHDVERER--IFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRD-EGGEIRGHLNACRHRGMQV 95 (470)
T ss_dssp TTCEEEGGGSSCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCS
T ss_pred CCCcCCHHHcCCHHHHHHHHHH--HhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEecccCCCCCEe
Confidence 3568999999999999999866 66999999999999985 889999999999999998 8999999999999999999
Q ss_pred CCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeE-eEEEECCeEEEecCCCcccccccCCCC
Q 012708 144 SEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRF-PTMVSQGLLFVWPDEYGQERANATKPP 222 (458)
Q Consensus 144 ~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~-pv~e~~G~V~V~~~~~~~~~~~~~~~p 222 (458)
+.|.+++.+.|+||||||+||++|+|+.+|+.....+. .+++...+|..+ .|++++|+|||++++++.+ +++++.+
T Consensus 96 ~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~-~~~~l~~ 172 (470)
T 2b1x_A 96 CRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGN--QLKKSDWNLRPMPNLASYKGLIFGSLDPHADS-LEDYLGD 172 (470)
T ss_dssp CCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGGSCCBCSEEEEETTEEEEESCTTCCC-HHHHHGG
T ss_pred eccCcCCCCEEEECCCCCeecCCCceeecCcccccccc--cCCHhhCCCcccceEEEECCEEEEEeCCCCCC-HHHHhcc
Confidence 99988645799999999999999999999985432110 123446789999 6777899999999877543 2222221
Q ss_pred CCCCCC------CCCCCceE--EEEEEEecChhhhhhhc-cCCCccccccccccc
Q 012708 223 MLPDAF------DKPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (458)
Q Consensus 223 ~~p~~~------~~~~~~~~--~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~ 268 (458)
+...+ ...++... ....+++||||+++||+ +|+||++++|+++++
T Consensus 173 -~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 173 -LKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp -GHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred -hhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 11001 12234333 24568899999999999 999999999999754
No 11
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=8.2e-40 Score=342.09 Aligned_cols=198 Identities=14% Similarity=0.174 Sum_probs=159.3
Q ss_pred CccccCCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcC
Q 012708 66 DEKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (458)
Q Consensus 66 ~~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~ 144 (458)
...||.++|+|+++|+.|++. +|.+.|++||++++|+ +|++++++++|++|||+|+ .+|+|+||.|+|||||++|+
T Consensus 32 ~~~~~~~~Ytd~~~~~~E~~~--if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~-~dG~v~A~~n~C~Hrga~L~ 108 (457)
T 3gzx_A 32 NGKLDARIYADQDLYQLELER--VFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQ-KDQSIKVFLNQCRHRGMRIV 108 (457)
T ss_dssp TTEEEGGGGTCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSC
T ss_pred CCcCCHHHcCCHHHHHHHHHH--HHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEEC-CCCeEEEEeCcCCCCCcCcc
Confidence 457899999999999999876 6699999999999998 5999999999999999999 89999999999999999999
Q ss_pred CccccCCCeEEcCCCCeEEcCCCCeeecCCCCC-CCc--chhh-cCCCCCCceeEeEEEECCeEEEecCCCcccccccCC
Q 012708 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAAS-EGP--EARA-IQSPRACATRFPTMVSQGLLFVWPDEYGQERANATK 220 (458)
Q Consensus 145 ~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~-~~~--~~~~-~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~ 220 (458)
.|..+.++.|+||||||+||++|+|+.+|+... .+. .... +++.+.+|++|+|.+++|+||||+++++++ +++++
T Consensus 109 ~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~-l~e~l 187 (457)
T 3gzx_A 109 RSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPD-LKTYL 187 (457)
T ss_dssp CSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCC-HHHHT
T ss_pred CCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCC-hHHHH
Confidence 987544679999999999999999999998542 100 0000 134567899999999999999999987654 34454
Q ss_pred CCCCCCCC----CC--CCCceE--EEEEEEecChhhhhhhc-cCCCccc-cccccccc
Q 012708 221 PPMLPDAF----DK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHID-FAHHKVTG 268 (458)
Q Consensus 221 ~p~~p~~~----~~--~~~~~~--~~~~~~~~nwk~~~EN~-~D~~H~~-~vH~~~~~ 268 (458)
.+ +...+ +. .++..+ .....++||||+++||+ +|+||++ ++|.++++
T Consensus 188 g~-~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 188 SD-AMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp TT-CHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred hh-hHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 43 22111 21 133333 24578899999999999 8999999 99998654
No 12
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=100.00 E-value=7.8e-38 Score=328.83 Aligned_cols=193 Identities=14% Similarity=0.193 Sum_probs=154.1
Q ss_pred ccccCCCccCccccccccccccccCCceEEeeecCCCCC-CCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCC
Q 012708 67 EKEDYGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE 145 (458)
Q Consensus 67 ~~~~~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~~-g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~ 145 (458)
..||.++|+|+++++.|++. +|.+.|++||++++|++ |+++.+.++|++|+|+|+ .+|+++||.|+|||||++|+.
T Consensus 31 ~~~p~~~y~d~~~~~~E~~~--if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~ 107 (460)
T 1uli_A 31 GRLDPRIYTDEALYEQELER--IFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQ-KNGEIRVFLNQCRHRGMRICR 107 (460)
T ss_dssp TEECGGGGTCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCC
T ss_pred CcCCHHHcCCHHHHHHHHHH--hhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeeeCCCCCCCCcc
Confidence 57899999999999999765 66999999999999984 888999999999999998 899999999999999999999
Q ss_pred ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcccccccCCCCCCC
Q 012708 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP 225 (458)
Q Consensus 146 G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~~~~~~~~p~~p 225 (458)
|.+++++.|+||||||+||++|+|+.+|+.....+ .+++.+.+|++|+|++++|+|||++++++++ +++++.+ +.
T Consensus 108 g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~---~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~-l~~~l~~-~~ 182 (460)
T 1uli_A 108 ADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFP---GLRKEDWGPLQARVETYKGLIFANWDADAPD-LDTYLGE-AK 182 (460)
T ss_dssp SSEEECSCEECTTTCCEECTTCCEEECTTHHHHCT---TCCGGGSSCCEEEEEEETTEEEEECCTTSCC-HHHHHTT-HH
T ss_pred ccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccC---CCCHhHcCCceeeEEEECCEEEEEeCCCCCC-HHHHhcc-hH
Confidence 88754579999999999999999999997532101 1234567899999999999999999887543 2223222 11
Q ss_pred CC----CCC--CCCceE--EEEEEEecChhhhhhhc-cCCCcc-cccccccc
Q 012708 226 DA----FDK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHI-DFAHHKVT 267 (458)
Q Consensus 226 ~~----~~~--~~~~~~--~~~~~~~~nwk~~~EN~-~D~~H~-~~vH~~~~ 267 (458)
.. ++. ..+..+ ....+++||||+++||+ +|+||+ .++|...+
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 183 FYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp HHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred HHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 01 111 122221 23568899999999999 799999 69998554
No 13
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=5.3e-39 Score=336.70 Aligned_cols=195 Identities=15% Similarity=0.178 Sum_probs=156.3
Q ss_pred cccc-CCCccCccccccccccccccCCceEEeeecCCCC-CCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcC
Q 012708 67 EKED-YGSLVDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (458)
Q Consensus 67 ~~~~-~~~y~~~~~~~~e~~~~~~~~~~W~~v~~~~dL~-~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~ 144 (458)
..|| .++|+|+++++.|++. +|.+.|++||++++|+ +|+++.+.++|++|||+|+ .+|+|+||.|+|||||++|+
T Consensus 11 ~~~~~~~~y~~~~~~~~E~~~--if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~ 87 (447)
T 2bmo_A 11 GLTQKLLIHGDKELFQHELKT--IFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQ-NDGSVRAFLNVCRHRGKTLV 87 (447)
T ss_dssp GCEEEGGGGTCHHHHHHHHHH--TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBCC
T ss_pred CCCCccceeCCHHHHHHHHHH--hhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEEC-CCCCEEEEeccCcCCCCCcc
Confidence 4789 9999999999999765 6699999999999998 5999999999999999999 89999999999999999999
Q ss_pred CccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEe-EEEECCeEEEecCCCcccccccCCCCC
Q 012708 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFP-TMVSQGLLFVWPDEYGQERANATKPPM 223 (458)
Q Consensus 145 ~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~p-v~e~~G~V~V~~~~~~~~~~~~~~~p~ 223 (458)
.|.+++++.|+||||||+||++|+|+.+|+.....+. .+++.+.+|++|| |++++|+|||++++++.+ +++++.+
T Consensus 88 ~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~-l~~~l~~- 163 (447)
T 2bmo_A 88 HAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGD--AIKKKCLGLKEVPRIESFHGFIYGCFDAEAPP-LIDYLGD- 163 (447)
T ss_dssp CSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGG--GCCGGGCCCCBCSEEEEETTEEEEESCTTCCC-HHHHHTT-
T ss_pred ccccCCcCeEECCCCcchhcCCCcccccCcccccccc--cCCHhHCCCcccceEEEECCEEEEEcCCCCCC-HHHHhcc-
Confidence 9987546799999999999999999999975321010 1234567899998 999999999999887543 2223222
Q ss_pred CCCCC----C-CCCCceE--EEEEEEecChhhhhhhc-cCCCccccccccccc
Q 012708 224 LPDAF----D-KPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (458)
Q Consensus 224 ~p~~~----~-~~~~~~~--~~~~~~~~nwk~~~EN~-~D~~H~~~vH~~~~~ 268 (458)
+...+ + ..++..+ ....+++||||+++||+ +|+||++++|..+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~ 216 (447)
T 2bmo_A 164 AAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR 216 (447)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred HHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhh
Confidence 11011 1 2234443 23568899999999999 799999999976554
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.95 E-value=5.1e-27 Score=197.17 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=93.3
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCee
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~ 170 (458)
..|+.||.++||++|+++.++++|++|+|+|. +|+++|++|+|||||++|+.|.+. ++.|+||||||+||+ +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYEV--EGEIYATDNLCTHGSARMSDGYLE-GREIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEEE--CCEEEEECCcCCCCCCCCCCCeEe-CCEEECCCCCCEEeCCCCCEe
Confidence 36999999999999999999999999999995 899999999999999999999985 689999999999999 99999
Q ss_pred ecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecC
Q 012708 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (458)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~ 209 (458)
.+|.. .+|++|+|++++|.|||+++
T Consensus 79 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT--------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC--------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC--------------CCCCEEeEEEECCEEEEEcC
Confidence 98743 36899999999999999874
No 15
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=5.3e-27 Score=199.78 Aligned_cols=103 Identities=21% Similarity=0.411 Sum_probs=94.4
Q ss_pred ceEEeeecCCCCCCCcEEEEE-CCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCC-CCee
Q 012708 93 HWYPVSLVEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCT 170 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~-~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~-G~~~ 170 (458)
.|+.||.++||++|+.+.+++ +|++|+|+|+ .+|+++|+.|+|||||++|+.|.++ ++.|+||||||+||++ |+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~-~~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNS-EEHGVKAYQAMCPHQEILLSEGSYE-GGVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEE-TTTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEe-CCCeEEEEeCcCCCCCcCCCCceEc-CCEEEcCCCCCEEeCCCccCC
Confidence 599999999999999999999 9999999998 7999999999999999999999985 6899999999999995 9999
Q ss_pred ecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
. |. ..+|++|+|++++|+|||++++++
T Consensus 79 ~-p~--------------~~~L~~~~v~~~~g~v~v~~~~~~ 105 (111)
T 1vm9_A 79 N-PD--------------DAALAEYPVEVKGDDIYVSTKGIL 105 (111)
T ss_dssp S-SS--------------SCBCCEECEEEETTEEEECCTTCC
T ss_pred C-CC--------------cCCcCEEEEEEECCEEEEeccCcC
Confidence 7 42 236899999999999999998764
No 16
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=7.8e-27 Score=199.09 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=95.2
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCc-cccCCCeEEcCCCCeEEcC-CCCe
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG-RIDENGHLQCSYHGWSFDG-CGSC 169 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G-~~~~~~~l~CpyHGw~Fd~-~G~~ 169 (458)
..|+.||.++||++|+.+.+++.|++|+|+|+ +|+++|++|+|||||++|+.| .+. ++.|+||||||+||+ +|+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~~-~~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV--DGELFATQDRCTHGDWSLSDGGYLE-GDVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCTTSSCBSSTTCCEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEECCCCCCCcCCCCCCEEc-CCEEECCCCCCEEeCCCCcE
Confidence 36999999999999999999999999999997 899999999999999999999 775 679999999999999 8999
Q ss_pred eecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+.+|+. .+|++|+|++++|+|||+++++.
T Consensus 81 ~~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~~ 109 (112)
T 1fqt_A 81 KSPPPC--------------EALKIFPIRIEDNDVLVDFEAGY 109 (112)
T ss_dssp EESSCC--------------SCCCBCCEEEETTEEEECTTCCB
T ss_pred eCCCCC--------------CCccEEEEEEECCEEEEEecccc
Confidence 998742 35899999999999999997654
No 17
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.94 E-value=4e-27 Score=198.86 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=94.5
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCeee
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~~ 171 (458)
+|+.||.++||++|+.+.+.++|++|+|+|. +|+++|++|+|||||++|+.|.+. ++.|+||||||+||+ +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV--DGEFFAVQDTCTHGDWALSDGYLD-GDIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCcCcEEe-CCEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999995 899999999999999999999985 689999999999997 999999
Q ss_pred cCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCC
Q 012708 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (458)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~ 211 (458)
+|+. .+|++|+|++++|.|||++++.
T Consensus 78 ~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 78 LPAC--------------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp TTCC--------------SCCCEECEEEETTEEEECGGGC
T ss_pred CCCC--------------CCccEEEEEEECCEEEEEcccc
Confidence 8753 3689999999999999999764
No 18
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=4e-27 Score=199.55 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=93.4
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeE-EEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCee
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRD-LVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~-lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~~ 170 (458)
.|+.||.++||++|+.+.+++.|++ |+|+|+ +|+++|++|+|||||++|+.|.+. ++.|+||||||+||+ +|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV--DGEVFVTDNLCTHGNAMLTDGYQD-GTIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE--CCEEEEEeCcCCCCCCCCCCCEEe-CCEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999997 899999999999999999999986 689999999999998 99999
Q ss_pred ecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCC
Q 012708 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (458)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~ 211 (458)
.+|.. .+|++|+|++++|+|||+++++
T Consensus 80 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ--------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC--------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC--------------CCccEEeEEEECCEEEEeCCCC
Confidence 87743 3689999999999999999764
No 19
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.94 E-value=7.1e-27 Score=200.37 Aligned_cols=104 Identities=25% Similarity=0.471 Sum_probs=95.0
Q ss_pred CceEEeeecCCCCCCCcEEEEECCe-EEEEEEECCCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcC-CCCe
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGR-DLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSC 169 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~-~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~-~G~~ 169 (458)
+.|+.||.++||++|+++.++++|+ +|+|+|+ +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||+ +|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~-~~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV--GDQFYATEDTCTHGIASLSEGTLD-GDVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE--TTEEEEEESBCTTSSCBGGGSEEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEEe-CCEEECCCCCCEEcCCCcCE
Confidence 5799999999999999999999999 9999997 899999999999999999999986 689999999999998 9999
Q ss_pred eecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
+.+|+. .+|++|+|++++|.|||+++++.
T Consensus 80 ~~~P~~--------------~~L~~~~v~~~~g~V~v~~~~~~ 108 (115)
T 2de6_D 80 ASSPCT--------------VPLGVFEVEVKEGEVYVAGEKKL 108 (115)
T ss_dssp EETTCC--------------SCCCEEEEEESSSEEEEEEEEC-
T ss_pred eCCCCc--------------CCCCEEEEEEECCEEEEecCCcc
Confidence 998753 35899999999999999997654
No 20
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.94 E-value=9.5e-27 Score=203.89 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=95.6
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCC-eEEEEecCCCCCCC-CcCCccccC--C-CeEEcCCCCeEEcC-
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE--N-GHLQCSYHGWSFDG- 165 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G-~v~A~~n~CpHrga-~L~~G~~~~--~-~~l~CpyHGw~Fd~- 165 (458)
..|+.||.++||++|+.+.++++|++|+|||+ .+| +++|+.|+|||||+ +|+.|.+.+ + ..|+||||||+||+
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~ 80 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRP-RNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLY 80 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBC-SSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEE-CCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCC
Confidence 36999999999999999999999999999997 678 99999999999999 599998852 2 38999999999999
Q ss_pred CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCccc
Q 012708 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQE 214 (458)
Q Consensus 166 ~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~~ 214 (458)
+|+|+.+|. .+|++|+|++++|+|||++++++.+
T Consensus 81 tG~~~~~P~---------------~~L~~~~v~v~~g~V~V~~~~~~~~ 114 (130)
T 2jza_A 81 DGFCLEDGA---------------YSVAAYDTQVTNGNVQISIADSDVA 114 (130)
T ss_dssp TCCBSSCCS---------------SCCBCCCEEESSSEEEEECCCCCCC
T ss_pred CcCCCCCCc---------------CcceEEEEEEECCEEEEEeCCCCCC
Confidence 999998774 3589999999999999999877644
No 21
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.94 E-value=1.4e-26 Score=197.83 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=92.8
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCC-eEEEEecCCCCCCC-CcCCccccC-CC--eEEcCCCCeEEcC-
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE-NG--HLQCSYHGWSFDG- 165 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G-~v~A~~n~CpHrga-~L~~G~~~~-~~--~l~CpyHGw~Fd~- 165 (458)
..|+.||.++||++|+++.++++|++|+|||+ .+| +++|+.|+|||||+ +|+.|.+.+ ++ .|+||||||+||+
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRP-YHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEEC-SSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEE-CCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 45999999999999999999999999999997 699 69999999999999 799998852 23 8999999999999
Q ss_pred CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCC
Q 012708 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210 (458)
Q Consensus 166 ~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~ 210 (458)
+|+|+.+|. .+|++|||++++|+|||++++
T Consensus 84 tG~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~~ 113 (113)
T 2jo6_A 84 DGLCMEDEQ---------------FSVKHYEARVKDGVVQLRGGS 113 (113)
T ss_dssp TTEETTTTT---------------TCCCEEEEEEETTEEEEECCC
T ss_pred CccCCCCCc---------------ccccEEeEEEECCEEEEEcCC
Confidence 999998774 358999999999999999853
No 22
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.94 E-value=2.7e-26 Score=198.56 Aligned_cols=104 Identities=25% Similarity=0.400 Sum_probs=93.9
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCc--cccCCCeEEcCCCCeEEcC-CCC
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG--RIDENGHLQCSYHGWSFDG-CGS 168 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G--~~~~~~~l~CpyHGw~Fd~-~G~ 168 (458)
..|+.||.++||++|+++.++++|++|+|+|+ +|+++|+.|+|||||++|+.| .+. ++.|+||||||+||+ +|+
T Consensus 9 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~--~g~~~A~~n~CpH~g~~L~~G~~~~~-~~~i~CP~Hg~~Fdl~tG~ 85 (121)
T 3gce_A 9 STPVRVATLDQLKPGVPTAFDVDGDEVMVVRD--GDSVYAISNLCSHAEAYLDMGVFHAE-SLEIECPLHVGRFDVRTGA 85 (121)
T ss_dssp CCCEEEEEGGGSCTTCCEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEETT-TTEEECTTTCCEEETTTCC
T ss_pred cCcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCCCCceeec-CCEEEcCCCCCEEcCCCcc
Confidence 46999999999999999999999999999996 899999999999999999999 774 789999999999997 999
Q ss_pred eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 169 ~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|+.+|+. .+|++|+|++++|.|||+++.+.
T Consensus 86 ~~~~P~~--------------~~L~~~~v~v~~g~V~v~~~~~~ 115 (121)
T 3gce_A 86 PTALPCV--------------LPVRAYDVVVDGTEILVAPKEAD 115 (121)
T ss_dssp EEETTCC--------------SCCCBCCEEEETTEEEECCC---
T ss_pred EeCCCCc--------------CCcceEEEEEECCEEEEEECccc
Confidence 9998753 36899999999999999997654
No 23
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.94 E-value=3.7e-27 Score=213.08 Aligned_cols=119 Identities=20% Similarity=0.299 Sum_probs=97.4
Q ss_pred cCCceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccC--C-CeEEcCCCCeEEcC-
Q 012708 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE--N-GHLQCSYHGWSFDG- 165 (458)
Q Consensus 90 ~~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~--~-~~l~CpyHGw~Fd~- 165 (458)
..+.|+.||.++||++|+++.++++|++|+|+|. +|+++||.|+|||||++|+.|.+.+ + +.|+||||||+||+
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~--~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH--KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE--TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 3678999999999988999999999999999995 8999999999999999999998752 2 58999999999999
Q ss_pred CCCeee--c-CCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCcc
Q 012708 166 CGSCTR--I-PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQ 213 (458)
Q Consensus 166 ~G~~~~--i-P~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~~ 213 (458)
+|+|+. | |......+ .+++...+|++|+|++++|+|||++++++.
T Consensus 91 tG~~~~~~i~P~~~~~~~---~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~ 138 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAKP---KWCSKGVKQRIHTVKVDNGNIYVTLSKEPF 138 (157)
T ss_dssp TCEEEEEECCCC-----C---EEEEEEECSCEEEEEEETTEEEEECCCCSS
T ss_pred CcCEEEeccCCCcccccc---ccccccCcceEEEEEEECCEEEEEeCCCCc
Confidence 999996 3 64211000 001224679999999999999999987653
No 24
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=1.6e-26 Score=199.30 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=94.8
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECCCCeEEEEecCCCCCCC-CcCCccccCC--C-eEEcCCCCeEEcC-C
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA-PLSEGRIDEN--G-HLQCSYHGWSFDG-C 166 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~~G~v~A~~n~CpHrga-~L~~G~~~~~--~-~l~CpyHGw~Fd~-~ 166 (458)
..|+.||.++||++|+++.++++|++|+|||+ .+|+++|+.|+|||||+ +|+.|.+.++ . .|+||||||+||+ +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYI-PDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEe-cCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 57999999999999999999999999999998 79999999999999999 8999988521 2 8999999999999 9
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|+|+.+|. .+|++|||++++|.|||++++..
T Consensus 83 G~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~~~~ 113 (119)
T 3c0d_A 83 GQCLEDEA---------------HCLKTWRVTVDDNQVCYLAKELE 113 (119)
T ss_dssp CBBSSCTT---------------CBCCEECEEESSSEEEEECCCC-
T ss_pred CcCCCCCC---------------ceeeEEEEEEECCEEEEEeCCcc
Confidence 99998774 25899999999999999997653
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.9e-26 Score=198.80 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=89.1
Q ss_pred CceEEeeecCCCCCCCcEEEEEC-CeEEEEEEECCCCeEEEEecCCCCCCCCcCCccccC----CCeEEcCCCCeEEcC-
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLL-GRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE----NGHLQCSYHGWSFDG- 165 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~-g~~lvl~R~~~~G~v~A~~n~CpHrga~L~~G~~~~----~~~l~CpyHGw~Fd~- 165 (458)
+.|++||.++||++|..+.+.+. |++|+|||+ .+|+++|++|+|||||++|+.|.+.+ ...|+||||||+||+
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~-~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRL-DDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEEC-TTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEc-CCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 57999999999999999988885 799999998 79999999999999999998776531 236999999999997
Q ss_pred CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE-CCeEEEecCC
Q 012708 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLFVWPDE 210 (458)
Q Consensus 166 ~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~-~G~V~V~~~~ 210 (458)
+|+|+..|. .+|++|||+++ +|+|||.+.+
T Consensus 87 tG~~~~~p~---------------~~l~~ypv~ve~dG~V~V~~~a 117 (119)
T 4aiv_A 87 DGSCLDDPR---------------VSVPVYPARVTPEGRIQVARVA 117 (119)
T ss_dssp TCBBSSCTT---------------CBCCEECEEECTTSEEEEEEEE
T ss_pred CCcCcCCCC---------------CccceEEEEEEeCCEEEEecCC
Confidence 899997663 35899999865 7999998754
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.85 E-value=2.8e-21 Score=168.88 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=87.6
Q ss_pred CceEEeeecCCCCCCCcEEEEECCeEEEEEEECC--------------------------CCeEEEEecCCCCCCCCcCC
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAPLSE 145 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHrga~L~~ 145 (458)
..|..+ .+++|++|+.+.+.+.|++++|+|. . +|+++|+.|+|||+|++|+.
T Consensus 4 ~~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~ 81 (129)
T 1rie_A 4 MSKIEI-KLSDIPEGKNMAFKWRGKPLFVRHR-TKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIA 81 (129)
T ss_dssp CSSEEE-EGGGSCTTCEEEEEETTEEEEEEEC-CHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEE
T ss_pred cCceEe-eHHHCCCCCEEEEEECCeEEEEEEC-CHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccc
Confidence 357777 8999999999999999999999995 4 89999999999999999999
Q ss_pred ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEE-ECCeEEE
Q 012708 146 GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (458)
Q Consensus 146 G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~V~V 206 (458)
|.+. ++.|+||||||+||++|+|+..|.. ..|..||+++ .+|.|||
T Consensus 82 g~~~-~~~i~CP~Hg~~fd~~G~~~~~P~~--------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 82 NAGD-FGGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TCTT-TEEEEETTTTEEEETTCCEEESSCC--------------SCCCCCCEEESSSSEEEE
T ss_pred ccCC-CCEEEcCCCCCEEcCCCCEeeCCCC--------------CCCCceeEEEEeCCEEEE
Confidence 9874 6799999999999999999988753 2588999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.84 E-value=1.7e-21 Score=172.36 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=88.8
Q ss_pred CCceEEeee-cCCCCCCCcEEEE-ECCeEEEEEEECCCCeE--EEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCC
Q 012708 91 RDHWYPVSL-VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 166 (458)
Q Consensus 91 ~~~W~~v~~-~~dL~~g~~~~~~-~~g~~lvl~R~~~~G~v--~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~ 166 (458)
...|+.++. ++||++|..+.+. +.|++++++|+ .+|++ +|++|+|||||++|+.|.. ++.|+||||||+||.+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~-~~G~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~t 95 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVE-SDKTLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQ 95 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBC-TTSSBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETT
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEe-CCCcEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCC
Confidence 467888888 8999987776665 67888888887 79999 9999999999999998873 5799999999999999
Q ss_pred CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecC
Q 012708 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (458)
Q Consensus 167 G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~ 209 (458)
|+|+..|.. .+|++|+|++++|.|||.+-
T Consensus 96 G~~~~~P~~--------------~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 96 GRVVRGPAP--------------LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp CCEEESSCC--------------SCCCEEEEEEETTEEEEEEC
T ss_pred CCCccCCCC--------------CCCCEEEEEEECCEEEEEeC
Confidence 999998742 35899999999999999874
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.83 E-value=1.1e-20 Score=165.99 Aligned_cols=99 Identities=21% Similarity=0.178 Sum_probs=87.1
Q ss_pred CceEEeeecCCCCCCCcEEEEEC--CeEEEEEEECC---------CCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCC
Q 012708 92 DHWYPVSLVEDLDPNLPTAFQLL--GRDLVLWFDNN---------SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHG 160 (458)
Q Consensus 92 ~~W~~v~~~~dL~~g~~~~~~~~--g~~lvl~R~~~---------~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHG 160 (458)
--|+.||.++||++|+.+.+.+. |++++|+|. . +|+++|+.|+|||+|++|+.+ . +++.|+|||||
T Consensus 6 ~p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~-~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~-~~~~i~CP~Hg 82 (133)
T 1g8k_B 6 YPATAVSVAKNLAANEPVSFTYPDTSSPCVAVKL-GAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-S-SSKTFSCPCHF 82 (133)
T ss_dssp CCCEEEEEGGGCCBTCCEEEECSSTTSEEEEEEC-SSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTC
T ss_pred CCceeEEEHHHCCCCCeEEEEecCCCceEEEEEc-cccccccccCCCEEEEEeCcCCCCCCCCCcc-c-CCCEEECCCCC
Confidence 35899999999999999999985 999999996 4 899999999999999999974 3 36799999999
Q ss_pred eEEcC--CCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE--CCeEEEe
Q 012708 161 WSFDG--CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVW 207 (458)
Q Consensus 161 w~Fd~--~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~V~V~ 207 (458)
|+||+ +|+|+..|.. ..|++|+|++. +|.|||.
T Consensus 83 ~~Fd~~~~G~~~~gP~~--------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 83 TEFDAEKAGQMICGEAT--------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp CEEEGGGTTEEEESSCS--------------SCCCEEEEEEETTTTEEEEE
T ss_pred CEECCCCCCCEEcCCCC--------------CCCCEEEEEEECCCCEEEEE
Confidence 99999 8999988743 25899999999 6789985
No 29
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.79 E-value=1.4e-19 Score=165.68 Aligned_cols=99 Identities=22% Similarity=0.234 Sum_probs=85.4
Q ss_pred ceEEeeecCCCCCCCcEEEEECC--eEEEEEEEC--------CCCeEEEEecCCCCCCCCcCCccccCCCeEEcCCCCeE
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLG--RDLVLWFDN--------NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWS 162 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g--~~lvl~R~~--------~~G~v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~ 162 (458)
-+..||.++||++|+.+.+++.| ++++|+|.. .+|+++|++|+|||+|++|+.| . +++.|+||||||+
T Consensus 50 p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~-~~~~i~CP~Hg~~ 127 (175)
T 4aay_B 50 PANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-A-DNKTFNCPGHFSV 127 (175)
T ss_dssp CCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTCCE
T ss_pred CcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-C-CCCEEEcCCCCCE
Confidence 45579999999999999999975 589999951 2899999999999999999998 4 4679999999999
Q ss_pred EcCC--CCeeecCCCCCCCcchhhcCCCCCCceeEeEEE-ECCeEEEe
Q 012708 163 FDGC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVW 207 (458)
Q Consensus 163 Fd~~--G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~V~V~ 207 (458)
||++ |+|+..|+. ..|++|+|++ .+|.||+-
T Consensus 128 Fd~~~tG~~~~gPa~--------------~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT--------------QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp EEGGGTTEEEECSCS--------------SCCCBEEEEECTTSEEEEE
T ss_pred ECCCCCceEecCCCC--------------CCcCEEEEEEEcCCEEEEE
Confidence 9996 999998753 3589999999 68999854
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.67 E-value=5.2e-21 Score=167.51 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=82.4
Q ss_pred CceEEee-ecCCCCCCCcEEEE-ECCeEEEEEEECCCCe--EEEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCC
Q 012708 92 DHWYPVS-LVEDLDPNLPTAFQ-LLGRDLVLWFDNNSNK--WVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCG 167 (458)
Q Consensus 92 ~~W~~v~-~~~dL~~g~~~~~~-~~g~~lvl~R~~~~G~--v~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G 167 (458)
..++.+. ..++|++|+.+.+. +.|.+++++|. .+|+ ++|+.|+|||||++|+.|. . ++.|+||||||+||.+|
T Consensus 14 g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~-~~G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG 90 (133)
T 3azc_A 14 GNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVT-EDHQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTG 90 (133)
Confidence 4555544 55678888777766 44555566655 6898 9999999999999999987 3 57999999999999999
Q ss_pred CeeecCCCCCCCcchhhcCCCCCCceeEeEEE-ECCeEEEecCC
Q 012708 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVWPDE 210 (458)
Q Consensus 168 ~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~V~V~~~~ 210 (458)
+|+.+|+. .+|++|||++ ++|.|||.++.
T Consensus 91 ~~~~~P~~--------------~~L~~ypv~v~~~g~V~V~~~~ 120 (133)
T 3azc_A 91 KVVRGPAP--------------LSLALVKATVTEDDKLVFTPWT 120 (133)
Confidence 99988743 2589999999 99999999864
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.73 E-value=1.2e-17 Score=154.38 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=83.1
Q ss_pred CCceEEeeecCCCCCCCcEEEEECCeEEEEEEECC--------------------------CCeEEEEecCCCCCCCC-c
Q 012708 91 RDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAP-L 143 (458)
Q Consensus 91 ~~~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHrga~-L 143 (458)
...|+.| .+++|++|+.+.+.+.|++++|+|. . +|+++|+.|+|+|+|+. |
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~ 137 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHR-TPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPI 137 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEEC-CHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEEC-CHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceec
Confidence 3579999 6999999999999999999999995 3 59999999999999995 5
Q ss_pred CCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEE
Q 012708 144 SEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (458)
Q Consensus 144 ~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V 206 (458)
..+ . +.+.|.||||||+||++|+|+..|.. ..|..+|+++.+|.|||
T Consensus 138 ~~~-~-~~~~~~CPcHGs~FD~~G~v~~gPa~--------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 138 GEA-G-DFGGWFCPCHGSHYDISGRIRKGPAP--------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EEE-T-TTTEEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTEEEE
T ss_pred cCC-C-CCCEEEcCCCCCEECCCCCEecCCCC--------------CCcceEEEEEECCEEEE
Confidence 543 2 35799999999999999999998743 24667777778999987
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.73 E-value=6.5e-18 Score=157.34 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=84.0
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEECC--------------------------CCeEEEEecCCCCCCCCcCCccccC
Q 012708 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAPLSEGRIDE 150 (458)
Q Consensus 97 v~~~~dL~~g~~~~~~~~g~~lvl~R~~~--------------------------~G~v~A~~n~CpHrga~L~~G~~~~ 150 (458)
.+.+++|++|+.+.+.+.|++|+|+|. . +|+++|+.|+|||+|++|+.|..+
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~-t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~- 152 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHR-TKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGD- 152 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEEC-CHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCST-
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEEC-CHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCC-
Confidence 589999999999999999999999984 3 899999999999999999998774
Q ss_pred CCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEE-ECCeEEE
Q 012708 151 NGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (458)
Q Consensus 151 ~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~V~V 206 (458)
.+.|.||||||+||.+|+++..|.. ..|..||+++ .+|.|+|
T Consensus 153 ~~~~~CP~HGs~FD~~G~v~~gPa~--------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 153 FGGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp TSSEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTTEEEE
T ss_pred CCEEEeCCCCCEECCCCCCccCCCC--------------CCCcceeEEEEECCEEEE
Confidence 5789999999999999999998753 2588999998 7899987
No 33
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.73 E-value=1e-17 Score=148.25 Aligned_cols=94 Identities=15% Similarity=0.267 Sum_probs=81.5
Q ss_pred eecCCCCCCCcEEEEECCeEEEEEEE---------------------------------------CCCCeEEEEecCCCC
Q 012708 98 SLVEDLDPNLPTAFQLLGRDLVLWFD---------------------------------------NNSNKWVAFDDKCPH 138 (458)
Q Consensus 98 ~~~~dL~~g~~~~~~~~g~~lvl~R~---------------------------------------~~~G~v~A~~n~CpH 138 (458)
..+++|++|+.+++...|++|.|.|. ..+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 46789999999999999999999983 017899999999999
Q ss_pred CCCCcCC-ccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEE-ECCeEEE
Q 012708 139 RLAPLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (458)
Q Consensus 139 rga~L~~-G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e-~~G~V~V 206 (458)
+|++|+. +.. +.+.|.||||||+||++|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSG-DFGGWFCPCHGSHWDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEET-TTTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCcc-CCCEEEcCCCCCEECCCCCCccCCCC--------------CCCCceeEEEEECCEEEE
Confidence 9999998 655 35799999999999999999998753 2588999999 7999987
No 34
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.73 E-value=1.2e-17 Score=154.60 Aligned_cols=99 Identities=16% Similarity=0.275 Sum_probs=82.8
Q ss_pred ceEEeeecCCCCCCCcEEEEECCeEEEEEEE------------------C---------------------CCCeEEEEe
Q 012708 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFD------------------N---------------------NSNKWVAFD 133 (458)
Q Consensus 93 ~W~~v~~~~dL~~g~~~~~~~~g~~lvl~R~------------------~---------------------~~G~v~A~~ 133 (458)
.|..| .+++|++|+.+.+.+.|++|+|+|. + .+|+++|+.
T Consensus 48 ~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~ 126 (187)
T 2qjy_C 48 ASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMW 126 (187)
T ss_dssp CCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEE
T ss_pred ccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEe
Confidence 36654 8999999999999999999999992 0 279999999
Q ss_pred cCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE-CCeEEE
Q 012708 134 DKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLFV 206 (458)
Q Consensus 134 n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~-~G~V~V 206 (458)
|+|||+|++|+.|..++.+.|.||||||+||++|+|+..|.. ..|..||+++. +|.|+|
T Consensus 127 ~~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~--------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 127 GVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEEEETTEEEE
T ss_pred CccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC--------------CCCceEEEEEEeCCEEEE
Confidence 999999999998422224799999999999999999988743 25889999986 688887
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.71 E-value=1.4e-17 Score=151.22 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=75.7
Q ss_pred ecCCCCCCCcEEEEECCeE-------------EEEEEECC------------CCeEEEEecCCCCCCCCcCCccccCCCe
Q 012708 99 LVEDLDPNLPTAFQLLGRD-------------LVLWFDNN------------SNKWVAFDDKCPHRLAPLSEGRIDENGH 153 (458)
Q Consensus 99 ~~~dL~~g~~~~~~~~g~~-------------lvl~R~~~------------~G~v~A~~n~CpHrga~L~~G~~~~~~~ 153 (458)
..++|++|+.+.+..-|.+ +++.|- . .+.++||.|+|||+|++|+.|.++ ++.
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~-~p~~~~~~~~~~~~~gv~A~~~~CpH~G~~L~~g~~~-~~~ 103 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARF-DPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVAD-EEA 103 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEEC-CGGGSCHHHHTTCBTTEEEEECBCTTTCCBCCEEEGG-GTE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheecc-ChhhcCccccccccCCEEEEEeecCCCCeEcccccCC-CCE
Confidence 5666777776666543332 445552 1 233999999999999999998885 679
Q ss_pred EEcCCCCeEEcCC-CC-eeecCCCCCCCcchhhcCCCCCCceeEeEEEECCeEEEecCCCc
Q 012708 154 LQCSYHGWSFDGC-GS-CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (458)
Q Consensus 154 l~CpyHGw~Fd~~-G~-~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~~~~~ 212 (458)
|+||||||+||++ |. |+..|+. .+|..|++++++|.|||+++...
T Consensus 104 i~CP~Hgs~Fd~~tG~~~~~gPa~--------------~~L~~~~v~v~~g~V~v~~~~~~ 150 (165)
T 1nyk_A 104 ALCPCHGGVYDLRHGAQVIAGPPP--------------RPVPQLPVRVEDGVLVAAGEFLG 150 (165)
T ss_dssp EECTTTCCEEEGGGTTEEEESSCS--------------SCCCEECEEEETTEEEECSSCSS
T ss_pred EECCCCCCEEcCCCCCeeecCCCC--------------CCCcEEEEEEECCEEEEEecCcc
Confidence 9999999999994 86 9988742 36899999999999999997643
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.67 E-value=3.9e-18 Score=157.07 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=80.3
Q ss_pred cCCCCCCCcEEEE-ECCeEEEEEEECCCCeE--EEEecCCCCCCCCcCCccccCCCeEEcCCCCeEEcCCCCeeecCCCC
Q 012708 100 VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176 (458)
Q Consensus 100 ~~dL~~g~~~~~~-~~g~~lvl~R~~~~G~v--~A~~n~CpHrga~L~~G~~~~~~~l~CpyHGw~Fd~~G~~~~iP~~~ 176 (458)
.++|++|+.+.+. +.|++++++|+ .+|++ +|+.|+|||+|++|+.+.. ++.|.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVE-SKEAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBC-TTCCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEE-CCCcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 4678888887776 77899999998 89998 9999999999999998873 5789999999999999999987742
Q ss_pred CCCcchhhcCCCCCCceeEeEEEECCeEEEec
Q 012708 177 SEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (458)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~pv~e~~G~V~V~~ 208 (458)
..|..||+++++|.|||.+
T Consensus 146 -------------~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -------------LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -------------SCCBCCCCCCSSSSCCCCC
T ss_pred -------------CCCCeEEEEEECCEEEEEe
Confidence 3589999999999999876
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.57 E-value=5.1e-16 Score=145.44 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=71.9
Q ss_pred cEEEEECCeEEEEEEECC------------CCeEEEEecCCCCCCCCcCCccc----------cCCCeEEcCCCCeEEcC
Q 012708 108 PTAFQLLGRDLVLWFDNN------------SNKWVAFDDKCPHRLAPLSEGRI----------DENGHLQCSYHGWSFDG 165 (458)
Q Consensus 108 ~~~~~~~g~~lvl~R~~~------------~G~v~A~~n~CpHrga~L~~G~~----------~~~~~l~CpyHGw~Fd~ 165 (458)
.+.+++.+.+++++|+ . +|+++|+.|+|||+|++|+.|.+ .+++.|+||||||+||+
T Consensus 55 ~~~v~v~~~~i~v~r~-~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl 133 (204)
T 1jm1_A 55 QQITEIPNPYYGKYAG-PLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYAL 133 (204)
T ss_dssp SCCCEEECTTTTSSCT-TGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEG
T ss_pred cceEeeCCceEEEEec-CccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeC
Confidence 3567788888888886 4 79999999999999999998863 23679999999999999
Q ss_pred C--CCeeecCCCCCCCcchhhcCCCCCCceeEeEEEE--CCeEEEec
Q 012708 166 C--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVWP 208 (458)
Q Consensus 166 ~--G~~~~iP~~~~~~~~~~~~~~~~~~l~~~pv~e~--~G~V~V~~ 208 (458)
+ |+|+..|.. ..|+.|++.++ +|.|||..
T Consensus 134 ~tGG~v~~gPa~--------------~~L~~~~v~v~~~~g~v~v~g 166 (204)
T 1jm1_A 134 KDGGVVVSGPAP--------------RPLPIVILDYDSSTGDIYAVG 166 (204)
T ss_dssp GGTSEEEESSCC--------------SCCCBEEEEECTTTCEEEEEE
T ss_pred CCCCeEecCCCC--------------CCCCeEeeEEEecCCEEEEEe
Confidence 6 699988743 24788888887 89999876
No 38
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=38.39 E-value=93 Score=31.39 Aligned_cols=58 Identities=10% Similarity=-0.083 Sum_probs=31.5
Q ss_pred EeecCCCeEEEEEEeeccccccCCCCcccccchhhhhhhcc--cccccchhHHHHhhhhHHHhh
Q 012708 334 NVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWT--SNKVYDGDMIVLQGQEKIFLS 395 (458)
Q Consensus 334 ~tPv~p~~trv~~~~~R~f~~~~~p~~~~~~~~~r~~~~~~--~~~V~~eD~~vle~qq~~~~~ 395 (458)
+.|+++++|.+...+.... +.+.. ..+.+.+...+.+ +..+..+|..+++.+|+++..
T Consensus 314 ~~P~gpd~TeV~~~~~v~k---da~e~-~k~~~~~~~~~~fgpsG~~~~dD~e~~e~~Q~g~~~ 373 (447)
T 2bmo_A 314 WNPIDENTTEVWTYAFVEK---DMPED-LKRRVADAVQRSIGPAGFWESDDNENMETMSQNGKK 373 (447)
T ss_dssp EEEEETTEEEEEEEEEEET---TSCHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHTTS
T ss_pred EEcCCCCeEEEEEEEEecC---CCCHH-HHHHHHHHHHhccCCcccCccchHHHHHHHHHHhcc
Confidence 4799999999776543221 11211 1111111111111 123446789999999999874
Done!