BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012709
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 23/145 (15%)
Query: 42 LAGVRTILDIGCGYGSF--------GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM 93
+ G+R I+D+GCG+G F +++ +L +A A+G +T ER
Sbjct: 42 VGGLR-IVDLGCGFGWFCRWAHEHGASYVLGLDLSEKXLARARAAGPDTGITYERA---- 96
Query: 94 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS--PLTNP 151
+L P SFD+ + + + + + L V + L PGG+FV+++ P+
Sbjct: 97 ----DLDKLHLPQDSFDLAYSS-LALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYXA 151
Query: 152 QA---FLRNKENQKRWNFVRDFVEN 173
A + + E ++ W R VE
Sbjct: 152 PARPGWAIDAEGRRTWPIDRYLVEG 176
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS 106
+LDIGCG G + H F+ L + + S ++ +R +S +LP+
Sbjct: 88 AVLDIGCGEGYY-THAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSD 146
Query: 107 LSFDMLH--CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147
S D + A C + E+ RV+KPGG+ + +P
Sbjct: 147 TSXDAIIRIYAPCKAE----------ELARVVKPGGWVITATP 179
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 48 ILDIGCGYGSFGAHLFSK-------ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK 100
ILDIGCG G L SK ++ + I E + L + G A +
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS 93
Query: 101 QLPYPSLSFD--MLHCARCGVDWDQKDGILLLEVDRVLKPGGYF 142
L + SFD ++ V ++ ++ EV RVLKPG Y
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYL 137
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 20/103 (19%)
Query: 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV-----QLTLERG----LPAMIGSFA 98
+LD+GCG G +G + S+ Y+A G + Q ERG L + G +
Sbjct: 57 VLDVGCGDG-YGTYKLSR-------TGYKAVGVDISEVXIQKGKERGEGPDLSFIKGDLS 108
Query: 99 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGY 141
S LP+ + F+ + ++W ++ L E+ RVLK GY
Sbjct: 109 S--LPFENEQFEAIXAINS-LEWTEEPLRALNEIKRVLKSDGY 148
>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
Possible Histamine N-Methyltransferase (Tm1293) From
Thermotoga Maritima At 2.20 A Resolution
Length = 219
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)
Query: 49 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLS 108
++IG G G F L K E S ++ +RG+ + G+ + L S
Sbjct: 52 VEIGVGTGRFAVPLKIK-------IGVEPSERXAEIARKRGVFVLKGTAENLPLKDESFD 104
Query: 109 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-----RNKENQKR 163
F + C VD ++ L E R+LK GGY + + + ++FL +NKE
Sbjct: 105 FALXVTTICFVDDPER---ALKEAYRILKKGGYLIVG--IVDRESFLGREYEKNKEKSVF 159
Query: 164 WNFVRDF 170
+ R F
Sbjct: 160 YKNARFF 166
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 320 FNSALLEKGKSVWVMNVVPTIG----TNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVH 375
F + L EK K V V+++ T+G + + + VL D C++ P YP L+
Sbjct: 162 FKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLID 221
Query: 376 AEGLLSLESGHR 387
+ L++ SGH+
Sbjct: 222 CDWLVA--SGHK 231
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)
Query: 311 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGF---VGVLHDWCEAFPT 366
LD+ A +GG L+ K G S+ +N+ P + G + V + P
Sbjct: 87 LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 146
Query: 367 YPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413
+YD + ++ H L +F E R+L+P G I D
Sbjct: 147 EDNSYDFIWSQDAF------LHSPDKLKVFQECARVLKPRGVXAITD 187
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-----SFA-SKQ 101
+LD+GCG G L + + + S QV R A + S+A +
Sbjct: 65 VLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAXD 122
Query: 102 LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGY-----FVWTSPLTNPQ 152
LP+ SFD + + G L E RVL+PGG FV +P+ +
Sbjct: 123 LPFEDASFDAVWALES-LHHXPDRGRALREXARVLRPGGTVAIADFVLLAPVEGAK 177
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP 105
+ +LDIGC G+ GA + I + + Q + L+ ++G + PY
Sbjct: 34 KEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDH---VVLGDIETXDXPYE 90
Query: 106 SLSFD 110
FD
Sbjct: 91 EEQFD 95
>pdb|3LPZ|A Chain A, Crystal Structure Of C. Therm. Get4
Length = 336
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 303 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNV 336
PY +V NV N + F SAL+E K + V N+
Sbjct: 196 PYLLVANVRAANTAYRIFTSALVEDNKGLTVQNI 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,802,103
Number of Sequences: 62578
Number of extensions: 643415
Number of successful extensions: 1198
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 14
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)