Query 012709
Match_columns 458
No_of_seqs 399 out of 2478
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:29:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-128 5E-133 993.6 26.2 423 1-450 77-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 6E-32 1.3E-36 279.6 9.2 200 222-452 33-262 (506)
3 PLN02336 phosphoethanolamine N 99.8 8.2E-19 1.8E-23 186.6 15.0 103 44-149 37-145 (475)
4 COG2226 UbiE Methylase involve 99.8 1.7E-18 3.6E-23 167.6 13.0 104 44-149 51-159 (238)
5 PF01209 Ubie_methyltran: ubiE 99.8 2.6E-18 5.7E-23 166.7 11.4 104 43-147 46-154 (233)
6 PLN02233 ubiquinone biosynthes 99.7 2.1E-17 4.5E-22 163.0 14.6 105 44-149 73-185 (261)
7 PRK10258 biotin biosynthesis p 99.7 4.5E-17 9.7E-22 159.0 13.8 138 4-149 4-143 (251)
8 PF08241 Methyltransf_11: Meth 99.7 4.4E-17 9.5E-22 133.3 10.3 93 49-144 1-95 (95)
9 COG2227 UbiG 2-polyprenyl-3-me 99.6 1.2E-15 2.6E-20 146.1 7.7 106 44-153 59-168 (243)
10 PLN02396 hexaprenyldihydroxybe 99.6 8.7E-15 1.9E-19 148.3 13.9 136 44-183 131-289 (322)
11 TIGR02072 BioC biotin biosynth 99.6 4.1E-14 9E-19 135.4 17.2 137 10-149 1-138 (240)
12 PF13489 Methyltransf_23: Meth 99.6 5.2E-15 1.1E-19 133.0 9.9 129 43-180 21-160 (161)
13 PLN02244 tocopherol O-methyltr 99.6 2.5E-14 5.5E-19 146.3 15.3 103 43-148 117-225 (340)
14 KOG1540 Ubiquinone biosynthesi 99.6 1.8E-14 3.9E-19 138.3 13.0 129 18-147 66-215 (296)
15 PRK14103 trans-aconitate 2-met 99.6 1.2E-14 2.6E-19 142.5 11.6 100 43-147 28-127 (255)
16 COG4106 Tam Trans-aconitate me 99.6 1.3E-14 2.8E-19 136.3 10.4 202 43-284 29-231 (257)
17 PTZ00098 phosphoethanolamine N 99.6 3.2E-14 7E-19 140.5 13.8 105 43-149 51-159 (263)
18 KOG4300 Predicted methyltransf 99.6 2E-14 4.4E-19 134.1 11.3 103 44-149 76-185 (252)
19 PLN02490 MPBQ/MSBQ methyltrans 99.6 4.1E-14 8.9E-19 144.1 14.3 139 44-185 113-258 (340)
20 TIGR02752 MenG_heptapren 2-hep 99.6 1E-13 2.2E-18 133.5 16.1 105 44-149 45-154 (231)
21 PRK05785 hypothetical protein; 99.5 2.8E-14 6.1E-19 137.9 11.3 89 45-139 52-140 (226)
22 PRK11036 putative S-adenosyl-L 99.5 6.7E-14 1.5E-18 137.3 13.5 102 44-149 44-152 (255)
23 PRK11207 tellurite resistance 99.5 7.3E-14 1.6E-18 132.1 12.9 98 45-146 31-134 (197)
24 PRK01683 trans-aconitate 2-met 99.5 6.3E-14 1.4E-18 137.3 12.5 102 43-147 30-131 (258)
25 TIGR00477 tehB tellurite resis 99.5 1E-13 2.2E-18 130.9 13.4 141 45-191 31-177 (195)
26 PF12847 Methyltransf_18: Meth 99.5 9.4E-14 2E-18 118.0 11.9 100 45-146 2-111 (112)
27 PF13847 Methyltransf_31: Meth 99.5 7.7E-14 1.7E-18 126.0 11.4 103 44-148 3-112 (152)
28 PRK11088 rrmA 23S rRNA methylt 99.5 1.4E-13 3E-18 136.4 13.3 98 44-149 85-184 (272)
29 PRK08317 hypothetical protein; 99.5 1.2E-12 2.7E-17 125.0 18.4 105 43-148 18-126 (241)
30 PLN02336 phosphoethanolamine N 99.5 4.3E-13 9.4E-18 142.8 16.4 103 44-149 266-372 (475)
31 PRK11873 arsM arsenite S-adeno 99.5 6.2E-13 1.3E-17 131.5 15.6 106 43-149 76-186 (272)
32 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.6E-13 7.7E-18 131.7 13.7 103 44-148 56-166 (247)
33 PF13649 Methyltransf_25: Meth 99.5 6.1E-14 1.3E-18 118.0 6.5 93 48-140 1-101 (101)
34 PRK12335 tellurite resistance 99.5 4.5E-13 9.8E-18 133.9 13.2 132 45-182 121-258 (287)
35 PRK15068 tRNA mo(5)U34 methylt 99.5 7.4E-13 1.6E-17 134.5 14.4 135 44-182 122-273 (322)
36 TIGR03587 Pse_Me-ase pseudamin 99.4 7.1E-13 1.5E-17 126.2 12.4 100 44-147 43-143 (204)
37 TIGR00740 methyltransferase, p 99.4 7.5E-13 1.6E-17 128.5 12.3 104 44-149 53-164 (239)
38 TIGR00452 methyltransferase, p 99.4 1.6E-12 3.5E-17 131.4 14.9 135 44-182 121-272 (314)
39 PF08242 Methyltransf_12: Meth 99.4 4.7E-14 1E-18 117.9 3.2 92 49-142 1-99 (99)
40 smart00138 MeTrc Methyltransfe 99.4 8.5E-13 1.9E-17 130.5 12.3 104 44-147 99-243 (264)
41 smart00828 PKS_MT Methyltransf 99.4 1.6E-12 3.4E-17 124.6 13.6 134 46-182 1-143 (224)
42 PRK01544 bifunctional N5-gluta 99.4 8.9E-12 1.9E-16 133.8 19.6 100 45-146 139-269 (506)
43 PRK00107 gidB 16S rRNA methylt 99.4 8.5E-12 1.8E-16 117.3 16.3 118 45-182 46-168 (187)
44 KOG1270 Methyltransferases [Co 99.4 3.9E-13 8.5E-18 129.9 6.9 100 45-151 90-200 (282)
45 PRK06922 hypothetical protein; 99.4 2.1E-12 4.5E-17 139.7 11.5 104 44-148 418-539 (677)
46 PF03848 TehB: Tellurite resis 99.4 1.2E-11 2.5E-16 116.5 14.3 133 45-183 31-169 (192)
47 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.7E-11 3.6E-16 116.4 15.4 103 44-147 39-144 (223)
48 PRK00121 trmB tRNA (guanine-N( 99.3 6.2E-12 1.3E-16 119.4 11.6 102 44-147 40-157 (202)
49 PF07021 MetW: Methionine bios 99.3 1E-11 2.3E-16 115.9 12.4 99 45-149 14-112 (193)
50 PRK06202 hypothetical protein; 99.3 8.5E-12 1.8E-16 120.6 12.0 104 43-148 59-168 (232)
51 PRK00216 ubiE ubiquinone/menaq 99.3 3.4E-11 7.4E-16 115.5 16.1 105 44-149 51-161 (239)
52 PF02353 CMAS: Mycolic acid cy 99.3 1.4E-11 3.1E-16 122.3 12.9 100 43-147 61-167 (273)
53 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.7E-11 3.6E-16 117.6 11.9 100 45-147 35-153 (213)
54 TIGR00138 gidB 16S rRNA methyl 99.3 2.9E-11 6.4E-16 113.0 13.3 96 45-147 43-143 (181)
55 PF05401 NodS: Nodulation prot 99.3 1.4E-11 3E-16 115.4 9.8 101 43-147 42-147 (201)
56 TIGR00537 hemK_rel_arch HemK-r 99.3 6.9E-11 1.5E-15 109.7 14.2 121 45-182 20-164 (179)
57 PRK11705 cyclopropane fatty ac 99.3 2.5E-11 5.4E-16 126.1 12.3 100 43-147 166-268 (383)
58 TIGR00091 tRNA (guanine-N(7)-) 99.3 3.5E-11 7.5E-16 113.5 11.9 101 45-147 17-133 (194)
59 TIGR02021 BchM-ChlM magnesium 99.3 6.3E-11 1.4E-15 113.4 13.1 132 44-182 55-205 (219)
60 TIGR02469 CbiT precorrin-6Y C5 99.2 8.8E-11 1.9E-15 101.0 11.3 97 45-146 20-122 (124)
61 PRK08287 cobalt-precorrin-6Y C 99.2 3.1E-10 6.8E-15 106.1 15.7 118 44-180 31-153 (187)
62 TIGR02716 C20_methyl_CrtF C-20 99.2 1.6E-10 3.5E-15 116.3 14.6 103 43-149 148-257 (306)
63 PF05175 MTS: Methyltransferas 99.2 5.2E-10 1.1E-14 103.3 16.6 116 22-147 17-141 (170)
64 TIGR01983 UbiG ubiquinone bios 99.2 3.5E-10 7.5E-15 108.1 15.8 136 44-183 45-203 (224)
65 TIGR00406 prmA ribosomal prote 99.2 3.9E-10 8.4E-15 112.9 16.6 95 45-147 160-260 (288)
66 PRK05134 bifunctional 3-demeth 99.2 2.1E-10 4.5E-15 110.7 13.9 135 44-182 48-204 (233)
67 COG2230 Cfa Cyclopropane fatty 99.2 2.8E-10 6E-15 112.6 14.9 103 43-150 71-180 (283)
68 KOG3010 Methyltransferase [Gen 99.2 2.8E-11 6.2E-16 115.7 7.6 98 44-146 33-137 (261)
69 PLN03075 nicotianamine synthas 99.2 2.6E-10 5.6E-15 113.9 13.8 102 44-146 123-233 (296)
70 PRK15001 SAM-dependent 23S rib 99.2 2.1E-10 4.5E-15 118.6 13.5 130 8-147 198-341 (378)
71 PRK11188 rrmJ 23S rRNA methylt 99.2 1.1E-10 2.3E-15 111.7 10.4 97 44-147 51-166 (209)
72 PRK13255 thiopurine S-methyltr 99.2 1.8E-10 3.9E-15 110.9 11.9 98 45-145 38-154 (218)
73 PRK13944 protein-L-isoaspartat 99.2 1.9E-10 4.1E-15 109.5 11.9 96 44-146 72-173 (205)
74 PTZ00146 fibrillarin; Provisio 99.2 5E-10 1.1E-14 111.5 15.2 158 17-182 106-270 (293)
75 PF08003 Methyltransf_9: Prote 99.2 1.4E-10 3.1E-15 115.0 10.9 133 44-180 115-264 (315)
76 PRK09489 rsmC 16S ribosomal RN 99.2 3.5E-10 7.5E-15 115.9 13.4 99 46-147 198-304 (342)
77 PRK04266 fibrillarin; Provisio 99.2 6.5E-10 1.4E-14 107.6 14.6 132 44-183 72-210 (226)
78 TIGR02081 metW methionine bios 99.2 7E-10 1.5E-14 104.4 14.3 130 45-182 14-166 (194)
79 COG4976 Predicted methyltransf 99.2 1.7E-11 3.7E-16 116.3 3.3 136 44-183 125-265 (287)
80 PF05219 DREV: DREV methyltran 99.1 1.3E-09 2.9E-14 106.0 16.1 98 44-149 94-191 (265)
81 KOG1541 Predicted protein carb 99.1 2.9E-10 6.3E-15 107.5 10.7 100 44-147 50-161 (270)
82 PF13659 Methyltransf_26: Meth 99.1 1.4E-10 3E-15 99.4 7.9 100 46-147 2-116 (117)
83 PRK13942 protein-L-isoaspartat 99.1 5.3E-10 1.1E-14 107.1 12.5 96 44-146 76-176 (212)
84 PRK00377 cbiT cobalt-precorrin 99.1 1E-09 2.2E-14 103.8 14.2 118 44-177 40-164 (198)
85 PLN02585 magnesium protoporphy 99.1 1.1E-09 2.3E-14 111.0 15.2 128 45-180 145-296 (315)
86 PRK14967 putative methyltransf 99.1 8.3E-10 1.8E-14 106.3 13.6 100 45-147 37-160 (223)
87 PRK00517 prmA ribosomal protei 99.1 2.5E-09 5.3E-14 104.9 17.0 118 44-181 119-236 (250)
88 PRK14121 tRNA (guanine-N(7)-)- 99.1 3.7E-10 8E-15 116.7 11.6 101 45-147 123-236 (390)
89 PRK14968 putative methyltransf 99.1 1.7E-09 3.6E-14 100.1 14.3 121 44-180 23-170 (188)
90 PRK07580 Mg-protoporphyrin IX 99.1 9.4E-10 2E-14 105.5 12.9 93 44-142 63-162 (230)
91 TIGR00080 pimt protein-L-isoas 99.1 8.4E-10 1.8E-14 105.6 11.5 97 43-146 76-177 (215)
92 COG2264 PrmA Ribosomal protein 99.1 9.5E-10 2.1E-14 109.7 11.8 121 44-182 162-287 (300)
93 TIGR03534 RF_mod_PrmC protein- 99.1 3.7E-09 8E-14 102.6 15.8 121 45-180 88-238 (251)
94 COG2813 RsmC 16S RNA G1207 met 99.1 1.1E-09 2.4E-14 108.8 11.7 130 8-147 128-267 (300)
95 PF06325 PrmA: Ribosomal prote 99.1 1.6E-09 3.4E-14 108.7 12.9 118 44-182 161-282 (295)
96 cd02440 AdoMet_MTases S-adenos 99.1 1.5E-09 3.3E-14 87.9 10.4 97 47-145 1-103 (107)
97 TIGR03438 probable methyltrans 99.0 1.7E-09 3.7E-14 109.0 12.6 106 44-149 63-180 (301)
98 PLN02232 ubiquinone biosynthes 99.0 6.1E-10 1.3E-14 102.0 8.3 76 73-149 1-84 (160)
99 TIGR01177 conserved hypothetic 99.0 2.3E-09 4.9E-14 109.3 13.2 102 43-147 181-295 (329)
100 KOG1271 Methyltransferases [Ge 99.0 4.3E-09 9.4E-14 96.9 13.0 106 43-149 66-184 (227)
101 TIGR03533 L3_gln_methyl protei 99.0 7.6E-09 1.6E-13 103.5 14.6 101 45-147 122-252 (284)
102 TIGR00438 rrmJ cell division p 99.0 2.5E-09 5.4E-14 100.1 10.3 99 43-147 31-147 (188)
103 PRK14966 unknown domain/N5-glu 98.9 1E-08 2.3E-13 106.7 14.3 122 46-181 253-403 (423)
104 COG4123 Predicted O-methyltran 98.9 1.2E-08 2.6E-13 99.4 13.4 122 45-180 45-191 (248)
105 PRK13256 thiopurine S-methyltr 98.9 6.3E-09 1.4E-13 100.5 11.4 100 45-147 44-164 (226)
106 KOG2361 Predicted methyltransf 98.9 3.4E-09 7.3E-14 101.6 9.3 104 46-150 73-187 (264)
107 PRK09328 N5-glutamine S-adenos 98.9 1.3E-08 2.9E-13 100.3 13.7 101 44-146 108-238 (275)
108 PRK00312 pcm protein-L-isoaspa 98.9 1.1E-08 2.4E-13 97.6 11.7 95 43-147 77-176 (212)
109 TIGR00536 hemK_fam HemK family 98.9 3.2E-08 6.8E-13 98.9 15.4 100 46-147 116-245 (284)
110 PRK11805 N5-glutamine S-adenos 98.9 2.2E-08 4.9E-13 101.2 14.2 100 46-147 135-264 (307)
111 PRK07402 precorrin-6B methylas 98.9 1.2E-08 2.7E-13 96.1 11.5 98 44-147 40-143 (196)
112 PF03291 Pox_MCEL: mRNA cappin 98.9 8.4E-09 1.8E-13 105.2 10.8 102 44-147 62-187 (331)
113 PF05891 Methyltransf_PK: AdoM 98.9 9E-09 2E-13 98.0 9.9 140 43-184 54-202 (218)
114 PRK00811 spermidine synthase; 98.9 4.6E-08 1E-12 97.8 15.0 103 43-147 75-192 (283)
115 PRK10901 16S rRNA methyltransf 98.8 2.2E-08 4.8E-13 105.6 11.8 106 43-149 243-375 (427)
116 PHA03411 putative methyltransf 98.8 2.5E-08 5.4E-13 98.6 11.2 127 45-180 65-211 (279)
117 KOG2940 Predicted methyltransf 98.8 9.7E-09 2.1E-13 97.7 7.5 104 43-149 71-177 (325)
118 PF00891 Methyltransf_2: O-met 98.8 1.9E-08 4E-13 97.8 9.7 101 43-149 99-202 (241)
119 PF05148 Methyltransf_8: Hypot 98.8 4.4E-08 9.5E-13 92.7 11.5 113 44-182 72-184 (219)
120 PRK04457 spermidine synthase; 98.8 3.7E-08 8E-13 97.4 11.4 103 43-147 65-178 (262)
121 PRK01581 speE spermidine synth 98.8 1E-07 2.2E-12 97.7 14.7 103 43-147 149-269 (374)
122 TIGR00563 rsmB ribosomal RNA s 98.8 6.5E-08 1.4E-12 102.1 13.8 105 44-149 238-371 (426)
123 PF01739 CheR: CheR methyltran 98.8 3.8E-08 8.3E-13 93.2 10.8 104 44-147 31-176 (196)
124 PRK14904 16S rRNA methyltransf 98.8 5E-08 1.1E-12 103.5 12.5 105 44-149 250-380 (445)
125 PF01135 PCMT: Protein-L-isoas 98.8 3.2E-08 6.9E-13 94.7 9.4 98 43-147 71-173 (209)
126 PRK14901 16S rRNA methyltransf 98.8 9.9E-08 2.1E-12 100.9 13.9 107 43-149 251-387 (434)
127 smart00650 rADc Ribosomal RNA 98.8 3.8E-08 8.3E-13 90.6 9.4 96 44-146 13-113 (169)
128 TIGR00446 nop2p NOL1/NOP2/sun 98.8 4.6E-08 9.9E-13 96.8 10.6 107 43-149 70-202 (264)
129 PRK13943 protein-L-isoaspartat 98.8 4.8E-08 1.1E-12 99.3 10.9 97 44-147 80-181 (322)
130 KOG1975 mRNA cap methyltransfe 98.7 2.9E-08 6.3E-13 98.7 8.8 104 44-149 117-240 (389)
131 TIGR03704 PrmC_rel_meth putati 98.7 1.2E-07 2.6E-12 93.2 13.1 102 45-147 87-217 (251)
132 PRK14903 16S rRNA methyltransf 98.7 6.6E-08 1.4E-12 102.2 10.9 107 43-149 236-369 (431)
133 PF05724 TPMT: Thiopurine S-me 98.7 1.1E-07 2.4E-12 91.5 11.5 132 44-182 37-189 (218)
134 PLN02366 spermidine synthase 98.7 3.7E-07 7.9E-12 92.4 15.5 103 43-147 90-207 (308)
135 COG2519 GCD14 tRNA(1-methylade 98.7 1.8E-07 3.9E-12 90.8 12.6 100 43-149 93-198 (256)
136 PF02390 Methyltransf_4: Putat 98.7 1.6E-07 3.6E-12 88.9 12.1 99 47-147 20-134 (195)
137 PF06080 DUF938: Protein of un 98.7 4.4E-07 9.5E-12 86.0 14.6 132 47-181 28-190 (204)
138 COG2242 CobL Precorrin-6B meth 98.7 6E-07 1.3E-11 83.7 15.1 98 43-147 33-136 (187)
139 PHA03412 putative methyltransf 98.7 1.1E-07 2.4E-12 92.1 10.5 96 45-141 50-158 (241)
140 KOG3045 Predicted RNA methylas 98.7 1.6E-07 3.5E-12 90.9 11.2 113 43-183 179-291 (325)
141 COG2518 Pcm Protein-L-isoaspar 98.7 2.5E-07 5.5E-12 87.8 12.0 94 43-147 71-170 (209)
142 TIGR00417 speE spermidine synt 98.7 4.8E-07 1E-11 89.8 14.5 103 43-147 71-187 (270)
143 PRK14902 16S rRNA methyltransf 98.6 9.9E-08 2.1E-12 101.2 9.8 105 44-149 250-382 (444)
144 COG2890 HemK Methylase of poly 98.6 4E-07 8.7E-12 90.9 13.4 113 47-175 113-254 (280)
145 COG0220 Predicted S-adenosylme 98.6 1.3E-07 2.9E-12 91.4 8.9 100 46-147 50-165 (227)
146 PRK03612 spermidine synthase; 98.6 7.7E-07 1.7E-11 96.3 15.5 124 43-176 296-437 (521)
147 PLN02781 Probable caffeoyl-CoA 98.6 2.7E-07 5.9E-12 89.7 10.4 100 43-146 67-178 (234)
148 PRK10611 chemotaxis methyltran 98.6 5.9E-07 1.3E-11 89.9 12.0 102 45-146 116-262 (287)
149 TIGR00478 tly hemolysin TlyA f 98.5 2.1E-06 4.5E-11 83.3 13.9 126 43-180 74-214 (228)
150 PF08704 GCD14: tRNA methyltra 98.5 1.9E-06 4.2E-11 84.4 13.6 101 43-149 39-149 (247)
151 COG3963 Phospholipid N-methylt 98.5 1.7E-06 3.7E-11 79.0 11.5 106 43-148 47-158 (194)
152 PF08241 Methyltransf_11: Meth 98.5 4.5E-08 9.7E-13 79.6 0.9 91 311-411 1-95 (95)
153 PRK13168 rumA 23S rRNA m(5)U19 98.5 2E-06 4.3E-11 91.3 13.5 96 44-147 297-401 (443)
154 PRK15128 23S rRNA m(5)C1962 me 98.4 1.4E-06 3E-11 91.1 12.0 101 45-147 221-340 (396)
155 KOG2899 Predicted methyltransf 98.4 8.7E-07 1.9E-11 85.3 9.4 101 44-145 58-208 (288)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1E-06 2.3E-11 98.5 10.6 101 45-147 539-657 (702)
157 COG1352 CheR Methylase of chem 98.4 2.5E-06 5.4E-11 84.5 12.0 104 44-147 96-242 (268)
158 PRK03522 rumB 23S rRNA methylu 98.4 3E-06 6.5E-11 86.0 12.8 98 45-149 174-277 (315)
159 COG0500 SmtA SAM-dependent met 98.4 3.9E-06 8.5E-11 70.6 11.1 99 48-149 52-158 (257)
160 PF07942 N2227: N2227-like pro 98.4 7E-06 1.5E-10 81.3 13.8 136 44-183 56-242 (270)
161 KOG3987 Uncharacterized conser 98.4 2.8E-07 6E-12 86.7 3.6 126 10-149 83-210 (288)
162 PRK10909 rsmD 16S rRNA m(2)G96 98.3 6.6E-06 1.4E-10 78.2 12.6 99 45-147 54-160 (199)
163 TIGR00479 rumA 23S rRNA (uraci 98.3 1E-05 2.3E-10 85.4 15.2 97 44-147 292-397 (431)
164 PRK11727 23S rRNA mA1618 methy 98.3 9.9E-06 2.1E-10 82.4 14.1 99 21-120 91-201 (321)
165 PLN02672 methionine S-methyltr 98.3 4.1E-06 8.8E-11 96.5 12.4 101 45-147 119-279 (1082)
166 PF01596 Methyltransf_3: O-met 98.3 2.8E-06 6E-11 81.1 8.8 100 44-147 45-156 (205)
167 PRK00274 ksgA 16S ribosomal RN 98.3 2.8E-06 6.1E-11 84.4 9.1 70 44-116 42-113 (272)
168 PF10294 Methyltransf_16: Puta 98.2 4.1E-06 9E-11 77.7 8.9 102 43-147 44-157 (173)
169 PLN02476 O-methyltransferase 98.2 4.9E-06 1.1E-10 82.9 9.9 100 43-146 117-228 (278)
170 PRK14896 ksgA 16S ribosomal RN 98.2 6E-06 1.3E-10 81.4 10.3 69 44-117 29-100 (258)
171 COG4122 Predicted O-methyltran 98.2 4.7E-06 1E-10 80.1 9.1 101 43-147 58-167 (219)
172 PRK04148 hypothetical protein; 98.2 7.7E-06 1.7E-10 72.7 9.8 91 45-146 17-109 (134)
173 TIGR02085 meth_trns_rumB 23S r 98.2 1.3E-05 2.9E-10 83.2 12.5 96 45-147 234-335 (374)
174 KOG2904 Predicted methyltransf 98.2 3.6E-05 7.8E-10 75.5 14.2 120 22-147 131-286 (328)
175 COG2521 Predicted archaeal met 98.2 6.7E-06 1.5E-10 78.9 8.8 132 43-181 133-275 (287)
176 PF05185 PRMT5: PRMT5 arginine 98.2 1.2E-05 2.7E-10 85.2 11.7 120 22-143 164-294 (448)
177 PRK01544 bifunctional N5-gluta 98.2 6.4E-06 1.4E-10 88.9 9.4 102 44-147 347-463 (506)
178 KOG1331 Predicted methyltransf 98.2 1.4E-06 3.1E-11 85.8 3.8 99 45-149 46-146 (293)
179 KOG1499 Protein arginine N-met 98.1 5.6E-06 1.2E-10 83.8 7.7 98 44-144 60-165 (346)
180 PF13489 Methyltransf_23: Meth 98.1 1E-06 2.3E-11 78.9 2.1 94 307-415 23-117 (161)
181 TIGR00755 ksgA dimethyladenosi 98.1 2.9E-05 6.2E-10 76.3 12.3 68 44-116 29-102 (253)
182 PLN02823 spermine synthase 98.1 3.6E-05 7.9E-10 78.8 13.1 102 44-147 103-221 (336)
183 COG2263 Predicted RNA methylas 98.1 2.9E-05 6.3E-10 72.5 10.8 116 44-180 45-165 (198)
184 COG1041 Predicted DNA modifica 98.1 1.4E-05 3E-10 81.3 9.2 102 43-147 196-311 (347)
185 PF12147 Methyltransf_20: Puta 98.1 5.9E-05 1.3E-09 74.9 13.3 154 29-182 120-297 (311)
186 PRK00107 gidB 16S rRNA methylt 98.0 3E-05 6.5E-10 73.0 10.4 130 308-451 47-187 (187)
187 PF01170 UPF0020: Putative RNA 98.0 4.6E-05 1E-09 71.2 11.2 104 43-146 27-151 (179)
188 PF09243 Rsm22: Mitochondrial 98.0 9.9E-05 2.1E-09 73.6 13.6 126 43-180 32-165 (274)
189 PLN02589 caffeoyl-CoA O-methyl 98.0 1.9E-05 4.1E-10 77.6 7.9 99 43-145 78-189 (247)
190 TIGR00095 RNA methyltransferas 97.9 0.00021 4.6E-09 67.3 14.1 99 45-147 50-160 (189)
191 PTZ00338 dimethyladenosine tra 97.9 3.7E-05 8E-10 77.4 9.0 73 44-122 36-114 (294)
192 PLN02244 tocopherol O-methyltr 97.9 1.9E-05 4E-10 81.1 6.8 95 307-412 119-222 (340)
193 KOG3191 Predicted N6-DNA-methy 97.9 0.00026 5.6E-09 65.8 13.4 102 45-147 44-169 (209)
194 KOG1661 Protein-L-isoaspartate 97.9 7.1E-05 1.5E-09 70.9 9.7 96 44-146 82-193 (237)
195 PRK11933 yebU rRNA (cytosine-C 97.9 0.00014 3.1E-09 77.6 13.3 106 43-149 112-245 (470)
196 PRK00536 speE spermidine synth 97.9 0.0003 6.6E-09 69.6 14.5 94 43-148 71-173 (262)
197 PF02527 GidB: rRNA small subu 97.9 0.00056 1.2E-08 64.3 15.3 93 47-146 51-148 (184)
198 PRK12335 tellurite resistance 97.9 1.3E-05 2.7E-10 80.3 4.4 116 308-436 122-258 (287)
199 KOG1269 SAM-dependent methyltr 97.9 2.6E-05 5.6E-10 80.5 6.6 101 46-149 112-218 (364)
200 COG0421 SpeE Spermidine syntha 97.8 0.00035 7.5E-09 69.9 14.0 103 43-147 75-191 (282)
201 PRK11207 tellurite resistance 97.8 1.3E-05 2.9E-10 75.7 3.7 93 308-411 32-132 (197)
202 KOG3178 Hydroxyindole-O-methyl 97.8 7.5E-05 1.6E-09 75.8 9.2 100 44-149 177-278 (342)
203 smart00828 PKS_MT Methyltransf 97.8 1.6E-05 3.5E-10 76.0 4.2 96 308-414 1-105 (224)
204 PF11968 DUF3321: Putative met 97.8 0.00027 5.9E-09 67.5 11.9 120 45-183 52-181 (219)
205 KOG1500 Protein arginine N-met 97.8 7.4E-05 1.6E-09 75.1 8.4 99 44-146 177-282 (517)
206 PF01564 Spermine_synth: Sperm 97.8 0.00044 9.5E-09 67.9 13.5 103 43-147 75-192 (246)
207 TIGR02752 MenG_heptapren 2-hep 97.8 5.7E-05 1.2E-09 72.6 6.8 97 308-413 47-151 (231)
208 PLN02233 ubiquinone biosynthes 97.7 2.4E-05 5.1E-10 77.4 4.1 98 308-413 75-182 (261)
209 TIGR00477 tehB tellurite resis 97.7 3.2E-05 7E-10 73.0 4.7 93 308-411 32-131 (195)
210 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 9.8E-05 2.1E-09 72.8 8.1 137 44-182 56-238 (256)
211 TIGR00537 hemK_rel_arch HemK-r 97.7 6.6E-05 1.4E-09 69.6 6.5 132 308-447 21-175 (179)
212 PRK10258 biotin biosynthesis p 97.7 6.4E-05 1.4E-09 73.4 6.2 94 307-412 43-139 (251)
213 PF02353 CMAS: Mycolic acid cy 97.7 2.4E-05 5.2E-10 77.9 2.7 98 308-412 64-165 (273)
214 PF02475 Met_10: Met-10+ like- 97.6 0.00036 7.8E-09 66.4 10.1 93 44-143 101-199 (200)
215 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00023 4.9E-09 74.3 9.1 98 46-149 59-161 (382)
216 COG1189 Predicted rRNA methyla 97.6 0.00062 1.4E-08 65.9 11.3 134 41-181 76-222 (245)
217 KOG2352 Predicted spermine/spe 97.6 0.00053 1.1E-08 72.4 11.6 100 47-148 51-163 (482)
218 COG1092 Predicted SAM-dependen 97.6 0.00028 6E-09 73.6 9.5 103 45-149 218-339 (393)
219 PRK05031 tRNA (uracil-5-)-meth 97.6 0.00045 9.7E-09 71.6 10.9 93 46-147 208-321 (362)
220 TIGR02143 trmA_only tRNA (urac 97.6 0.0005 1.1E-08 71.0 11.0 93 46-147 199-312 (353)
221 PRK11036 putative S-adenosyl-L 97.6 2.9E-05 6.3E-10 76.2 1.8 93 308-412 46-148 (255)
222 PF01269 Fibrillarin: Fibrilla 97.5 0.002 4.4E-08 61.9 13.7 157 17-181 47-210 (229)
223 PF03602 Cons_hypoth95: Conser 97.5 0.0005 1.1E-08 64.5 9.4 98 45-147 43-154 (183)
224 PRK15068 tRNA mo(5)U34 methylt 97.5 6.1E-05 1.3E-09 76.8 3.5 97 308-412 124-225 (322)
225 PF12847 Methyltransf_18: Meth 97.5 2.6E-05 5.5E-10 65.9 0.6 99 308-413 3-111 (112)
226 PRK11088 rrmA 23S rRNA methylt 97.5 0.00012 2.6E-09 72.7 5.2 92 308-413 87-181 (272)
227 TIGR00138 gidB 16S rRNA methyl 97.5 8.2E-05 1.8E-09 69.6 3.7 115 308-436 44-166 (181)
228 PTZ00098 phosphoethanolamine N 97.5 4.8E-05 1E-09 75.3 2.3 97 308-414 54-157 (263)
229 KOG3420 Predicted RNA methylas 97.4 0.00041 8.9E-09 62.3 7.2 72 44-117 48-123 (185)
230 PF01728 FtsJ: FtsJ-like methy 97.4 9.8E-05 2.1E-09 68.5 3.4 97 44-147 23-140 (181)
231 PRK00121 trmB tRNA (guanine-N( 97.4 0.00016 3.4E-09 68.7 4.6 126 307-435 41-179 (202)
232 PRK14103 trans-aconitate 2-met 97.4 0.0001 2.2E-09 72.2 3.2 94 308-412 31-125 (255)
233 KOG3201 Uncharacterized conser 97.4 7.7E-05 1.7E-09 68.0 1.9 136 45-192 30-176 (201)
234 TIGR00438 rrmJ cell division p 97.4 0.00035 7.6E-09 65.3 6.4 130 308-449 34-186 (188)
235 COG0030 KsgA Dimethyladenosine 97.4 0.00099 2.1E-08 65.7 9.5 74 45-122 31-108 (259)
236 PRK08317 hypothetical protein; 97.4 0.00016 3.5E-09 68.8 4.0 96 308-413 21-124 (241)
237 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.0012 2.7E-08 66.4 10.4 118 22-147 32-184 (311)
238 TIGR02072 BioC biotin biosynth 97.3 0.00017 3.6E-09 68.9 3.9 95 308-412 36-134 (240)
239 PLN02396 hexaprenyldihydroxybe 97.3 0.00011 2.4E-09 74.8 2.4 95 308-413 133-235 (322)
240 KOG1663 O-methyltransferase [S 97.3 0.0031 6.8E-08 60.7 11.9 99 44-146 73-183 (237)
241 PRK11705 cyclopropane fatty ac 97.3 0.00011 2.4E-09 76.7 2.2 95 308-412 169-266 (383)
242 COG0357 GidB Predicted S-adeno 97.3 0.0032 7E-08 60.5 12.0 121 45-181 68-193 (215)
243 TIGR03439 methyl_EasF probable 97.3 0.0021 4.6E-08 65.4 11.3 104 44-147 76-198 (319)
244 PF10672 Methyltrans_SAM: S-ad 97.3 0.00051 1.1E-08 68.9 6.5 102 45-148 124-240 (286)
245 KOG2915 tRNA(1-methyladenosine 97.2 0.0045 9.7E-08 61.0 12.5 121 43-181 104-233 (314)
246 PRK08287 cobalt-precorrin-6Y C 97.2 0.0006 1.3E-08 63.6 6.0 110 308-431 33-150 (187)
247 PF05401 NodS: Nodulation prot 97.2 0.00057 1.2E-08 64.5 5.8 135 306-449 43-193 (201)
248 PRK00517 prmA ribosomal protei 97.2 0.0011 2.3E-08 65.1 8.0 111 308-436 121-237 (250)
249 TIGR00452 methyltransferase, p 97.2 0.00022 4.7E-09 72.5 3.1 97 308-412 123-224 (314)
250 TIGR00406 prmA ribosomal prote 97.2 0.0005 1.1E-08 68.9 5.6 114 308-435 161-281 (288)
251 PRK14968 putative methyltransf 97.2 0.00077 1.7E-08 62.1 6.5 122 308-436 25-172 (188)
252 TIGR01934 MenG_MenH_UbiE ubiqu 97.2 0.00066 1.4E-08 64.2 6.0 97 308-413 41-143 (223)
253 PRK01683 trans-aconitate 2-met 97.2 0.00039 8.4E-09 68.0 4.6 92 307-412 32-129 (258)
254 COG2520 Predicted methyltransf 97.2 0.0061 1.3E-07 62.5 13.3 119 45-176 189-313 (341)
255 PRK11760 putative 23S rRNA C24 97.2 0.009 2E-07 61.1 14.1 95 43-147 210-306 (357)
256 PF08242 Methyltransf_12: Meth 97.2 0.00032 6.9E-09 58.2 3.1 90 311-409 1-99 (99)
257 PRK11188 rrmJ 23S rRNA methylt 97.1 0.001 2.3E-08 63.6 6.8 125 308-450 53-206 (209)
258 TIGR02987 met_A_Alw26 type II 97.1 0.004 8.6E-08 67.6 11.9 74 44-117 31-121 (524)
259 PRK09328 N5-glutamine S-adenos 97.1 0.0019 4E-08 63.7 8.6 137 308-450 110-275 (275)
260 KOG1709 Guanidinoacetate methy 97.1 0.003 6.6E-08 60.3 9.4 101 43-146 100-206 (271)
261 PTZ00146 fibrillarin; Provisio 97.1 0.00036 7.8E-09 70.0 3.3 96 308-411 134-235 (293)
262 COG0293 FtsJ 23S rRNA methylas 97.1 0.0048 1E-07 58.8 10.4 100 42-147 43-160 (205)
263 TIGR00308 TRM1 tRNA(guanine-26 97.0 0.0021 4.5E-08 67.0 8.6 99 46-149 46-150 (374)
264 COG2265 TrmA SAM-dependent met 97.0 0.0051 1.1E-07 65.2 11.5 98 43-147 292-397 (432)
265 PF01209 Ubie_methyltran: ubiE 97.0 0.00032 7E-09 68.3 2.2 97 308-412 49-152 (233)
266 COG0742 N6-adenine-specific me 97.0 0.005 1.1E-07 57.8 9.9 102 44-147 43-155 (187)
267 COG4627 Uncharacterized protei 97.0 0.00037 7.9E-09 63.2 2.2 60 92-151 31-91 (185)
268 TIGR03534 RF_mod_PrmC protein- 97.0 0.0013 2.8E-08 63.6 6.0 121 308-433 89-237 (251)
269 PRK11783 rlmL 23S rRNA m(2)G24 96.9 0.006 1.3E-07 68.6 11.7 126 21-149 170-350 (702)
270 smart00138 MeTrc Methyltransfe 96.9 0.0012 2.6E-08 65.4 5.5 137 259-416 67-245 (264)
271 TIGR00740 methyltransferase, p 96.9 0.00038 8.3E-09 67.5 1.8 98 308-414 55-162 (239)
272 KOG0820 Ribosomal RNA adenine 96.9 0.0031 6.7E-08 62.2 7.9 70 42-116 56-131 (315)
273 PF04672 Methyltransf_19: S-ad 96.9 0.0058 1.3E-07 60.5 9.9 105 42-148 66-192 (267)
274 COG2226 UbiE Methylase involve 96.9 0.00079 1.7E-08 65.7 3.4 96 308-412 53-155 (238)
275 PF00891 Methyltransf_2: O-met 96.8 0.00043 9.4E-09 67.1 1.3 100 302-412 96-198 (241)
276 PRK00050 16S rRNA m(4)C1402 me 96.8 0.0029 6.2E-08 63.8 7.2 45 44-88 19-63 (296)
277 TIGR00536 hemK_fam HemK family 96.8 0.0033 7.1E-08 62.9 7.5 137 308-450 116-282 (284)
278 PF08123 DOT1: Histone methyla 96.8 0.0033 7.1E-08 60.2 7.1 100 43-145 41-157 (205)
279 PF04816 DUF633: Family of unk 96.8 0.019 4.1E-07 54.9 11.9 116 48-182 1-123 (205)
280 PF03059 NAS: Nicotianamine sy 96.7 0.012 2.5E-07 58.8 10.7 101 45-146 121-230 (276)
281 PRK15451 tRNA cmo(5)U34 methyl 96.7 0.00076 1.6E-08 66.0 2.3 98 308-413 58-164 (247)
282 PRK00377 cbiT cobalt-precorrin 96.7 0.0019 4E-08 61.0 4.9 148 259-437 9-170 (198)
283 TIGR00080 pimt protein-L-isoas 96.7 0.0011 2.3E-08 63.5 3.2 88 308-412 79-176 (215)
284 TIGR01983 UbiG ubiquinone bios 96.7 0.00086 1.9E-08 63.9 2.6 92 308-413 47-149 (224)
285 PRK05785 hypothetical protein; 96.7 0.001 2.2E-08 64.4 3.0 88 308-407 53-141 (226)
286 PF13679 Methyltransf_32: Meth 96.7 0.0048 1E-07 55.1 7.0 97 43-149 24-134 (141)
287 TIGR00091 tRNA (guanine-N(7)-) 96.7 0.0022 4.8E-08 60.4 5.1 121 308-432 18-153 (194)
288 PF13847 Methyltransf_31: Meth 96.7 0.0014 3E-08 59.0 3.4 98 308-415 5-112 (152)
289 PF00398 RrnaAD: Ribosomal RNA 96.7 0.01 2.3E-07 58.6 9.9 106 18-138 12-123 (262)
290 PRK05134 bifunctional 3-demeth 96.7 0.001 2.2E-08 64.0 2.6 95 308-413 50-151 (233)
291 COG3897 Predicted methyltransf 96.7 0.0067 1.4E-07 57.2 7.7 100 44-149 79-182 (218)
292 COG0144 Sun tRNA and rRNA cyto 96.6 0.022 4.8E-07 58.9 12.4 109 42-150 154-292 (355)
293 PF05958 tRNA_U5-meth_tr: tRNA 96.6 0.0095 2.1E-07 61.6 9.6 52 47-101 199-255 (352)
294 KOG2798 Putative trehalase [Ca 96.6 0.016 3.4E-07 58.3 10.6 134 45-182 151-336 (369)
295 PRK11873 arsM arsenite S-adeno 96.6 0.0012 2.5E-08 65.3 2.6 96 308-413 79-183 (272)
296 PRK04266 fibrillarin; Provisio 96.6 0.0047 1E-07 59.9 6.8 91 309-411 75-174 (226)
297 PRK00216 ubiE ubiquinone/menaq 96.6 0.0049 1.1E-07 58.8 6.8 96 308-412 53-157 (239)
298 TIGR02716 C20_methyl_CrtF C-20 96.6 0.0018 3.8E-08 65.3 3.7 100 306-413 149-254 (306)
299 PLN02490 MPBQ/MSBQ methyltrans 96.5 0.0018 3.9E-08 66.5 3.4 117 308-433 115-252 (340)
300 PRK13944 protein-L-isoaspartat 96.5 0.0019 4E-08 61.5 3.2 92 308-412 74-172 (205)
301 PF09445 Methyltransf_15: RNA 96.5 0.0065 1.4E-07 56.0 6.5 66 47-115 2-76 (163)
302 PRK06922 hypothetical protein; 96.4 0.002 4.3E-08 70.9 3.0 105 307-414 419-538 (677)
303 TIGR03704 PrmC_rel_meth putati 96.4 0.0059 1.3E-07 60.1 5.8 130 308-440 88-243 (251)
304 PRK14967 putative methyltransf 96.3 0.005 1.1E-07 59.2 5.0 122 308-435 38-182 (223)
305 PF03848 TehB: Tellurite resis 96.3 0.0015 3.2E-08 61.9 1.2 98 308-411 32-131 (192)
306 PLN02668 indole-3-acetate carb 96.3 0.051 1.1E-06 56.7 12.3 136 14-150 26-241 (386)
307 PRK14966 unknown domain/N5-glu 96.3 0.016 3.4E-07 61.1 8.6 139 309-451 254-419 (423)
308 PRK14121 tRNA (guanine-N(7)-)- 96.3 0.0059 1.3E-07 63.7 5.4 119 308-432 124-256 (390)
309 TIGR01444 fkbM_fam methyltrans 96.3 0.0063 1.4E-07 53.7 4.9 41 47-88 1-41 (143)
310 PF05148 Methyltransf_8: Hypot 96.2 0.0047 1E-07 59.0 4.0 109 308-437 74-185 (219)
311 PRK13942 protein-L-isoaspartat 96.2 0.0032 6.9E-08 60.3 2.8 89 308-412 78-175 (212)
312 PRK04457 spermidine synthase; 96.2 0.014 3E-07 57.9 7.1 138 307-450 67-216 (262)
313 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.1 0.027 5.8E-07 56.5 9.1 106 42-148 83-221 (283)
314 PRK06202 hypothetical protein; 96.1 0.0039 8.5E-08 60.1 2.9 101 307-413 61-166 (232)
315 PRK11805 N5-glutamine S-adenos 96.1 0.0089 1.9E-07 60.6 5.6 115 308-428 135-277 (307)
316 PF13578 Methyltransf_24: Meth 96.0 0.002 4.2E-08 54.3 0.5 96 49-146 1-105 (106)
317 COG4076 Predicted RNA methylas 96.0 0.024 5.1E-07 53.3 7.5 93 46-144 34-133 (252)
318 cd02440 AdoMet_MTases S-adenos 96.0 0.0052 1.1E-07 49.0 2.9 95 309-412 1-103 (107)
319 PRK09489 rsmC 16S ribosomal RN 96.0 0.0045 9.7E-08 63.7 3.1 98 309-412 199-302 (342)
320 TIGR03533 L3_gln_methyl protei 96.0 0.015 3.2E-07 58.3 6.5 122 308-435 123-272 (284)
321 COG0116 Predicted N6-adenine-s 95.9 0.082 1.8E-06 54.9 11.7 132 12-147 163-345 (381)
322 COG2890 HemK Methylase of poly 95.9 0.024 5.2E-07 56.7 7.4 133 309-450 113-276 (280)
323 KOG3045 Predicted RNA methylas 95.8 0.014 3E-07 57.3 5.3 105 309-436 183-290 (325)
324 COG1889 NOP1 Fibrillarin-like 95.8 0.32 6.9E-06 46.4 14.0 157 17-182 50-213 (231)
325 COG4798 Predicted methyltransf 95.7 0.1 2.3E-06 49.3 10.4 141 41-183 45-205 (238)
326 PF01728 FtsJ: FtsJ-like methy 95.7 0.024 5.2E-07 52.4 6.4 139 306-450 23-180 (181)
327 TIGR02469 CbiT precorrin-6Y C5 95.7 0.0098 2.1E-07 50.6 3.4 91 308-412 21-121 (124)
328 KOG3010 Methyltransferase [Gen 95.7 0.0074 1.6E-07 58.6 2.7 112 307-431 34-158 (261)
329 COG2230 Cfa Cyclopropane fatty 95.6 0.0088 1.9E-07 59.7 3.0 94 308-412 74-175 (283)
330 PRK07580 Mg-protoporphyrin IX 95.5 0.012 2.5E-07 56.3 3.5 99 307-414 64-167 (230)
331 PRK00312 pcm protein-L-isoaspa 95.5 0.011 2.3E-07 56.3 3.2 86 308-412 80-174 (212)
332 COG4262 Predicted spermidine s 95.5 0.095 2.1E-06 53.9 10.0 105 43-149 288-410 (508)
333 TIGR02081 metW methionine bios 95.5 0.0085 1.8E-07 56.2 2.4 87 309-405 16-104 (194)
334 COG4976 Predicted methyltransf 95.5 0.0038 8.3E-08 60.2 0.1 135 306-451 125-286 (287)
335 PF07091 FmrO: Ribosomal RNA m 95.4 0.076 1.7E-06 52.1 8.8 132 43-180 104-241 (251)
336 PF06962 rRNA_methylase: Putat 95.4 0.13 2.8E-06 46.2 9.4 97 71-174 1-113 (140)
337 PF02390 Methyltransf_4: Putat 95.4 0.016 3.4E-07 54.9 3.8 124 308-433 19-156 (195)
338 KOG2187 tRNA uracil-5-methyltr 95.4 0.028 6.1E-07 59.9 5.9 69 21-100 368-441 (534)
339 KOG3115 Methyltransferase-like 95.3 0.063 1.4E-06 51.1 7.6 41 46-87 62-102 (249)
340 TIGR02021 BchM-ChlM magnesium 95.3 0.014 3.1E-07 55.7 3.4 100 307-415 56-160 (219)
341 TIGR03587 Pse_Me-ase pseudamin 95.3 0.011 2.5E-07 56.2 2.6 95 307-412 44-141 (204)
342 COG1064 AdhP Zn-dependent alco 95.3 0.1 2.2E-06 53.6 9.4 97 42-148 164-261 (339)
343 PF05175 MTS: Methyltransferas 95.3 0.014 3.1E-07 53.7 3.1 119 308-436 33-161 (170)
344 PF05971 Methyltransf_10: Prot 95.1 0.12 2.6E-06 52.2 9.4 95 22-120 83-189 (299)
345 PF06325 PrmA: Ribosomal prote 95.1 0.029 6.3E-07 56.6 5.0 128 308-451 163-295 (295)
346 PRK07402 precorrin-6B methylas 94.9 0.043 9.3E-07 51.5 5.3 39 391-429 120-159 (196)
347 COG5459 Predicted rRNA methyla 94.9 0.25 5.4E-06 50.7 10.7 106 43-149 112-228 (484)
348 KOG1596 Fibrillarin and relate 94.7 0.46 9.9E-06 46.5 11.7 130 15-149 128-264 (317)
349 KOG4589 Cell division protein 94.7 0.41 8.9E-06 45.2 10.8 99 42-147 67-185 (232)
350 TIGR03438 probable methyltrans 94.6 0.026 5.7E-07 56.9 3.3 97 308-411 65-175 (301)
351 PF13649 Methyltransf_25: Meth 94.3 0.004 8.8E-08 51.9 -2.9 94 310-407 1-101 (101)
352 PF07021 MetW: Methionine bios 94.3 0.034 7.4E-07 52.5 2.9 93 308-412 15-108 (193)
353 KOG1122 tRNA and rRNA cytosine 94.2 0.29 6.4E-06 51.2 9.8 109 41-150 238-375 (460)
354 PF05219 DREV: DREV methyltran 93.9 0.051 1.1E-06 53.6 3.5 88 307-411 95-186 (265)
355 TIGR03840 TMPT_Se_Te thiopurin 93.6 0.061 1.3E-06 51.7 3.4 32 308-339 36-67 (213)
356 TIGR00478 tly hemolysin TlyA f 93.4 0.15 3.3E-06 49.5 5.8 107 308-435 77-215 (228)
357 TIGR00563 rsmB ribosomal RNA s 93.4 0.15 3.3E-06 54.0 6.2 110 308-421 240-383 (426)
358 COG2384 Predicted SAM-dependen 93.3 1.7 3.7E-05 41.9 12.6 117 47-182 19-142 (226)
359 PF13659 Methyltransf_26: Meth 93.1 0.023 5E-07 48.1 -0.3 97 309-411 3-113 (117)
360 PRK15001 SAM-dependent 23S rib 93.1 0.077 1.7E-06 55.4 3.4 90 47-147 47-143 (378)
361 PLN02781 Probable caffeoyl-CoA 93.0 0.14 2.9E-06 49.9 4.8 70 369-451 143-233 (234)
362 PRK00811 spermidine synthase; 92.9 0.079 1.7E-06 53.1 3.1 138 307-450 77-237 (283)
363 TIGR01177 conserved hypothetic 92.8 0.072 1.6E-06 54.4 2.7 115 308-430 184-309 (329)
364 COG4123 Predicted O-methyltran 92.7 0.44 9.6E-06 46.9 7.8 125 306-433 44-190 (248)
365 COG0500 SmtA SAM-dependent met 92.6 0.19 4.1E-06 41.7 4.7 94 310-415 52-157 (257)
366 KOG0822 Protein kinase inhibit 92.6 0.4 8.8E-06 51.5 7.9 123 22-146 346-478 (649)
367 TIGR00417 speE spermidine synt 92.3 0.42 9.1E-06 47.4 7.4 138 307-450 73-232 (270)
368 PF08003 Methyltransf_9: Prote 92.2 0.19 4.2E-06 50.7 4.8 97 307-412 116-218 (315)
369 PRK01581 speE spermidine synth 92.1 0.28 6E-06 51.0 5.9 140 307-451 151-314 (374)
370 PRK13255 thiopurine S-methyltr 92.0 0.098 2.1E-06 50.4 2.4 121 308-437 39-190 (218)
371 cd08283 FDH_like_1 Glutathione 91.8 1.2 2.5E-05 46.3 10.3 102 44-147 184-307 (386)
372 PHA01634 hypothetical protein 91.8 0.79 1.7E-05 40.7 7.4 43 44-88 28-70 (156)
373 COG2227 UbiG 2-polyprenyl-3-me 91.6 0.15 3.3E-06 49.7 3.2 94 309-413 62-161 (243)
374 COG3129 Predicted SAM-dependen 91.5 0.69 1.5E-05 45.0 7.4 99 19-120 55-165 (292)
375 PF03492 Methyltransf_7: SAM d 91.4 0.58 1.3E-05 48.1 7.4 107 43-150 15-187 (334)
376 KOG2793 Putative N2,N2-dimethy 91.3 1.6 3.4E-05 43.1 9.9 101 44-147 86-200 (248)
377 PRK13943 protein-L-isoaspartat 91.1 0.16 3.5E-06 51.9 3.0 19 308-326 82-100 (322)
378 KOG1540 Ubiquinone biosynthesi 91.0 0.27 5.8E-06 48.5 4.1 108 308-424 102-226 (296)
379 PRK10901 16S rRNA methyltransf 90.6 0.39 8.5E-06 50.9 5.5 102 308-412 246-371 (427)
380 PF03514 GRAS: GRAS domain fam 90.5 3.9 8.4E-05 42.7 12.6 105 45-150 111-247 (374)
381 PF04989 CmcI: Cephalosporin h 90.5 0.45 9.7E-06 45.5 5.1 103 44-148 32-149 (206)
382 PLN02232 ubiquinone biosynthes 90.3 0.19 4.2E-06 45.8 2.4 48 361-414 35-82 (160)
383 cd08254 hydroxyacyl_CoA_DH 6-h 90.3 1.6 3.5E-05 43.5 9.3 94 44-147 165-264 (338)
384 PRK14902 16S rRNA methyltransf 90.2 0.24 5.2E-06 52.8 3.4 100 308-412 252-378 (444)
385 KOG1099 SAM-dependent methyltr 90.1 0.4 8.8E-06 46.5 4.4 99 43-147 40-164 (294)
386 PF03269 DUF268: Caenorhabditi 89.9 0.19 4.1E-06 46.2 2.0 45 106-150 61-115 (177)
387 cd00315 Cyt_C5_DNA_methylase C 89.8 0.89 1.9E-05 45.3 6.9 125 47-180 2-140 (275)
388 PF10294 Methyltransf_16: Puta 89.7 0.2 4.3E-06 46.4 2.0 107 306-423 45-172 (173)
389 TIGR00446 nop2p NOL1/NOP2/sun 89.6 0.52 1.1E-05 46.6 5.0 102 308-412 73-198 (264)
390 KOG1271 Methyltransferases [Ge 89.5 0.73 1.6E-05 43.4 5.4 115 309-427 70-195 (227)
391 COG2264 PrmA Ribosomal protein 89.4 0.86 1.9E-05 46.1 6.4 117 307-436 163-287 (300)
392 PF01861 DUF43: Protein of unk 89.1 24 0.00052 34.7 16.6 122 44-180 44-175 (243)
393 PF05185 PRMT5: PRMT5 arginine 89.1 0.34 7.3E-06 51.8 3.5 145 260-426 151-319 (448)
394 KOG1501 Arginine N-methyltrans 89.0 0.79 1.7E-05 48.3 5.9 67 18-88 42-108 (636)
395 PRK09424 pntA NAD(P) transhydr 88.8 2.9 6.2E-05 45.5 10.3 102 43-147 163-286 (509)
396 PRK09880 L-idonate 5-dehydroge 88.7 2.5 5.5E-05 42.9 9.5 95 44-147 169-267 (343)
397 PF06859 Bin3: Bicoid-interact 88.7 0.22 4.9E-06 42.8 1.4 39 108-147 1-45 (110)
398 PF07757 AdoMet_MTase: Predict 88.5 0.59 1.3E-05 40.1 3.8 31 44-77 58-88 (112)
399 KOG2920 Predicted methyltransf 88.3 0.22 4.7E-06 49.7 1.3 103 43-147 115-235 (282)
400 KOG4058 Uncharacterized conser 88.3 2.4 5.2E-05 38.7 7.7 108 26-146 59-172 (199)
401 COG0220 Predicted S-adenosylme 88.1 0.76 1.7E-05 44.7 4.9 118 308-427 50-180 (227)
402 PRK14904 16S rRNA methyltransf 88.0 0.54 1.2E-05 50.1 4.1 99 308-413 252-377 (445)
403 PLN03075 nicotianamine synthas 87.9 0.58 1.3E-05 47.3 4.0 140 307-452 124-276 (296)
404 PRK14903 16S rRNA methyltransf 87.9 0.6 1.3E-05 49.6 4.4 101 308-412 239-365 (431)
405 KOG2730 Methylase [General fun 87.5 0.59 1.3E-05 45.2 3.6 68 45-115 95-172 (263)
406 PF00107 ADH_zinc_N: Zinc-bind 87.4 1.2 2.6E-05 38.1 5.4 87 54-149 1-92 (130)
407 KOG2904 Predicted methyltransf 87.3 3.9 8.4E-05 40.9 9.2 161 267-450 128-327 (328)
408 PLN02366 spermidine synthase 87.2 1 2.3E-05 45.7 5.5 99 307-412 92-205 (308)
409 KOG2651 rRNA adenine N-6-methy 87.0 1.7 3.7E-05 45.2 6.8 43 42-86 151-193 (476)
410 COG4301 Uncharacterized conser 87.0 6.5 0.00014 38.9 10.4 106 42-150 76-197 (321)
411 TIGR00006 S-adenosyl-methyltra 86.9 3 6.5E-05 42.4 8.5 44 44-88 20-63 (305)
412 PRK15128 23S rRNA m(5)C1962 me 86.7 0.66 1.4E-05 48.8 3.8 125 308-436 222-368 (396)
413 COG4122 Predicted O-methyltran 86.4 0.81 1.8E-05 44.3 4.0 135 306-451 59-218 (219)
414 PRK03612 spermidine synthase; 86.3 1.4 3.1E-05 48.0 6.3 120 307-433 298-440 (521)
415 KOG2198 tRNA cytosine-5-methyl 86.2 7.7 0.00017 40.3 11.0 110 42-151 153-301 (375)
416 KOG3115 Methyltransferase-like 86.1 0.86 1.9E-05 43.6 3.8 22 394-415 164-185 (249)
417 COG0286 HsdM Type I restrictio 86.0 7 0.00015 42.3 11.4 106 44-149 186-329 (489)
418 KOG1562 Spermidine synthase [A 85.7 2.5 5.4E-05 42.6 7.0 105 43-149 120-239 (337)
419 COG1565 Uncharacterized conser 85.4 3.1 6.6E-05 43.1 7.7 45 44-88 77-128 (370)
420 PLN02476 O-methyltransferase 84.8 1.8 3.8E-05 43.5 5.6 133 306-451 118-278 (278)
421 PF06080 DUF938: Protein of un 84.8 1.6 3.6E-05 41.7 5.1 134 309-450 28-204 (204)
422 PF02005 TRM: N2,N2-dimethylgu 84.6 2.6 5.7E-05 44.1 7.0 100 45-149 50-157 (377)
423 PRK01747 mnmC bifunctional tRN 84.5 5.2 0.00011 44.8 9.9 118 45-180 58-224 (662)
424 TIGR02822 adh_fam_2 zinc-bindi 84.4 7.8 0.00017 39.2 10.3 91 43-147 164-255 (329)
425 PF02527 GidB: rRNA small subu 84.3 5.7 0.00012 37.3 8.6 137 267-436 26-174 (184)
426 KOG0024 Sorbitol dehydrogenase 84.1 5.8 0.00013 40.6 8.9 99 44-149 169-276 (354)
427 PRK14901 16S rRNA methyltransf 83.9 1.9 4.1E-05 45.8 5.8 35 393-427 364-402 (434)
428 COG1867 TRM1 N2,N2-dimethylgua 83.4 6.3 0.00014 40.9 8.9 99 45-149 53-157 (380)
429 PF01555 N6_N4_Mtase: DNA meth 82.8 3.8 8.3E-05 38.3 6.8 41 44-87 191-231 (231)
430 PHA03411 putative methyltransf 82.7 1.1 2.4E-05 44.8 3.2 99 308-411 66-181 (279)
431 cd05188 MDR Medium chain reduc 82.6 8 0.00017 36.7 9.1 96 43-148 133-234 (271)
432 PRK10742 putative methyltransf 82.4 3.6 7.7E-05 40.6 6.5 68 47-117 91-173 (250)
433 cd08237 ribitol-5-phosphate_DH 82.0 6.8 0.00015 39.8 8.8 94 44-147 163-257 (341)
434 KOG2539 Mitochondrial/chloropl 81.8 5.8 0.00013 42.4 8.2 105 44-149 200-318 (491)
435 cd08245 CAD Cinnamyl alcohol d 81.8 10 0.00022 37.8 9.8 95 44-147 162-257 (330)
436 PLN02585 magnesium protoporphy 81.7 1.9 4.2E-05 43.9 4.6 93 308-410 146-247 (315)
437 PF01596 Methyltransf_3: O-met 81.5 0.8 1.7E-05 43.8 1.6 133 306-451 45-205 (205)
438 PRK11524 putative methyltransf 81.4 1.3 2.8E-05 44.3 3.2 53 94-146 11-80 (284)
439 PRK11524 putative methyltransf 81.0 4.9 0.00011 40.2 7.1 43 43-88 207-249 (284)
440 cd08232 idonate-5-DH L-idonate 80.7 11 0.00023 37.8 9.7 94 44-147 165-263 (339)
441 PF10354 DUF2431: Domain of un 80.7 26 0.00057 32.3 11.3 119 50-181 2-150 (166)
442 cd08234 threonine_DH_like L-th 79.9 13 0.00029 36.9 10.0 94 44-147 159-258 (334)
443 cd08230 glucose_DH Glucose deh 79.2 9.2 0.0002 38.9 8.7 93 44-147 172-270 (355)
444 KOG2361 Predicted methyltransf 78.9 1.3 2.7E-05 43.5 2.0 100 309-415 74-185 (264)
445 PF11599 AviRa: RRNA methyltra 77.6 6.6 0.00014 38.0 6.4 79 10-88 15-96 (246)
446 PRK13699 putative methylase; P 77.3 8 0.00017 37.5 7.2 42 44-88 163-204 (227)
447 PRK13168 rumA 23S rRNA m(5)U19 77.3 6.7 0.00015 41.8 7.2 111 308-433 299-420 (443)
448 COG1063 Tdh Threonine dehydrog 77.2 11 0.00023 38.8 8.5 95 46-148 170-271 (350)
449 COG4106 Tam Trans-aconitate me 77.0 2.2 4.7E-05 41.4 3.0 136 306-455 30-191 (257)
450 TIGR03451 mycoS_dep_FDH mycoth 76.9 15 0.00033 37.3 9.5 94 44-147 176-277 (358)
451 TIGR02825 B4_12hDH leukotriene 76.6 22 0.00048 35.4 10.5 95 43-147 137-238 (325)
452 PF00145 DNA_methylase: C-5 cy 76.6 22 0.00048 35.2 10.4 124 47-181 2-140 (335)
453 TIGR00479 rumA 23S rRNA (uraci 75.8 4 8.7E-05 43.2 5.0 112 308-434 294-417 (431)
454 cd08281 liver_ADH_like1 Zinc-d 75.2 12 0.00026 38.3 8.3 94 44-147 191-291 (371)
455 KOG4300 Predicted methyltransf 74.6 2.3 5E-05 40.9 2.5 47 369-421 144-194 (252)
456 PF02636 Methyltransf_28: Puta 74.5 3.9 8.4E-05 40.0 4.2 44 45-88 19-69 (252)
457 PLN03154 putative allyl alcoho 74.4 22 0.00048 36.2 9.9 95 43-147 157-259 (348)
458 cd08239 THR_DH_like L-threonin 74.2 16 0.00035 36.6 8.8 94 45-147 164-263 (339)
459 COG4627 Uncharacterized protei 74.1 0.78 1.7E-05 42.1 -0.8 47 359-411 38-84 (185)
460 TIGR03201 dearomat_had 6-hydro 73.8 16 0.00035 37.0 8.7 95 44-147 166-273 (349)
461 TIGR03366 HpnZ_proposed putati 73.8 15 0.00032 36.1 8.2 95 44-147 120-219 (280)
462 TIGR00561 pntA NAD(P) transhyd 73.7 10 0.00022 41.4 7.4 97 44-145 163-283 (511)
463 cd08255 2-desacetyl-2-hydroxye 73.2 22 0.00048 34.3 9.2 93 44-147 97-191 (277)
464 TIGR01202 bchC 2-desacetyl-2-h 73.2 17 0.00036 36.3 8.5 86 45-147 145-232 (308)
465 PLN02823 spermine synthase 72.2 12 0.00026 38.6 7.2 132 307-451 104-268 (336)
466 PRK13699 putative methylase; P 71.6 5.9 0.00013 38.4 4.6 19 393-411 52-70 (227)
467 KOG1499 Protein arginine N-met 71.0 4.7 0.0001 41.5 3.9 84 308-410 62-164 (346)
468 TIGR00755 ksgA dimethyladenosi 70.8 4 8.6E-05 39.9 3.3 24 307-330 30-53 (253)
469 COG0275 Predicted S-adenosylme 69.2 25 0.00055 35.7 8.5 44 45-88 24-67 (314)
470 cd08261 Zn_ADH7 Alcohol dehydr 69.1 31 0.00067 34.5 9.4 94 44-147 159-259 (337)
471 COG0421 SpeE Spermidine syntha 68.2 14 0.00031 37.1 6.6 91 306-412 76-189 (282)
472 PLN02740 Alcohol dehydrogenase 67.9 26 0.00055 36.2 8.7 95 44-147 198-301 (381)
473 COG1255 Uncharacterized protei 67.8 15 0.00033 32.0 5.8 80 45-137 14-95 (129)
474 PF04445 SAM_MT: Putative SAM- 67.7 13 0.00027 36.5 5.9 72 46-120 77-163 (234)
475 PLN02586 probable cinnamyl alc 67.2 19 0.00042 36.8 7.6 95 44-147 183-279 (360)
476 smart00650 rADc Ribosomal RNA 67.0 5.6 0.00012 36.2 3.3 94 308-414 15-114 (169)
477 COG0270 Dcm Site-specific DNA 65.4 39 0.00084 34.5 9.4 123 46-177 4-141 (328)
478 cd08294 leukotriene_B4_DH_like 65.3 45 0.00098 32.9 9.7 93 44-147 143-242 (329)
479 COG0287 TyrA Prephenate dehydr 65.2 27 0.00059 35.0 7.9 91 46-144 4-96 (279)
480 PF05050 Methyltransf_21: Meth 64.9 10 0.00022 33.5 4.5 39 50-88 1-42 (167)
481 PTZ00357 methyltransferase; Pr 64.6 24 0.00052 39.8 7.8 94 46-141 702-830 (1072)
482 PRK00274 ksgA 16S ribosomal RN 64.5 5.4 0.00012 39.6 2.8 21 308-328 44-64 (272)
483 cd05278 FDH_like Formaldehyde 64.2 36 0.00079 33.9 8.8 94 44-146 167-267 (347)
484 PF01795 Methyltransf_5: MraW 64.0 27 0.00058 35.6 7.7 60 44-117 20-79 (310)
485 PRK10309 galactitol-1-phosphat 63.9 38 0.00083 34.1 9.0 95 44-147 160-261 (347)
486 TIGR00497 hsdM type I restrict 63.8 71 0.0015 34.6 11.5 105 44-148 217-357 (501)
487 PF07942 N2227: N2227-like pro 63.5 7 0.00015 39.0 3.4 74 357-437 150-242 (270)
488 PF02254 TrkA_N: TrkA-N domain 63.0 24 0.00051 29.5 6.2 89 53-147 4-97 (116)
489 PLN02827 Alcohol dehydrogenase 62.7 40 0.00086 34.8 9.0 96 43-147 192-296 (378)
490 KOG1541 Predicted protein carb 62.6 12 0.00026 36.5 4.5 121 306-431 50-178 (270)
491 PRK04148 hypothetical protein; 62.3 6.2 0.00014 35.2 2.5 92 308-437 18-110 (134)
492 cd08242 MDR_like Medium chain 61.8 58 0.0013 32.1 9.7 90 44-146 155-245 (319)
493 cd08295 double_bond_reductase_ 61.7 55 0.0012 32.8 9.6 95 43-147 150-252 (338)
494 cd08231 MDR_TM0436_like Hypoth 61.6 67 0.0014 32.5 10.3 94 44-147 177-281 (361)
495 PRK03522 rumB 23S rRNA methylu 61.6 4.3 9.4E-05 41.1 1.6 109 308-433 175-292 (315)
496 cd08236 sugar_DH NAD(P)-depend 60.6 62 0.0014 32.3 9.8 94 44-147 159-259 (343)
497 cd08293 PTGR2 Prostaglandin re 60.5 57 0.0012 32.6 9.5 90 46-146 156-254 (345)
498 PRK14896 ksgA 16S ribosomal RN 60.3 6.4 0.00014 38.7 2.5 25 308-332 31-55 (258)
499 TIGR00675 dcm DNA-methyltransf 60.1 14 0.00031 37.5 5.0 125 48-181 1-138 (315)
500 PF03686 UPF0146: Uncharacteri 60.0 28 0.00061 30.8 6.1 87 45-146 14-102 (127)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.4e-128 Score=993.57 Aligned_cols=423 Identities=46% Similarity=0.913 Sum_probs=399.7
Q ss_pred CCcccccceeccccccCc-cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH
Q 012709 1 MMMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG 79 (458)
Q Consensus 1 ~m~~~~~~~~F~~~~~~f-d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~ 79 (458)
||..++++|.|+|++++| +++..|+++++++++.. ...+..+++||||||+|+|+++|+++++.+++++..|.++
T Consensus 77 Wv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~ 152 (506)
T PF03141_consen 77 WVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHE 152 (506)
T ss_pred ceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCc
Confidence 688999999999999999 89999999999999863 2356789999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHH
Q 012709 80 SQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKE 159 (458)
Q Consensus 80 ~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e 159 (458)
.++|+|.+||+++.+......+||||+++||+|||++|+.+|..+.+.+|-|++|+|||||+|+++.++.+ ...+++
T Consensus 153 ~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~---~r~~~~ 229 (506)
T PF03141_consen 153 AQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY---QRTDED 229 (506)
T ss_pred hhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc---ccchHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999876 233456
Q ss_pred HHHHHHHHHHHHHhhccEEEEeeeceEEEeecCCCcccccCCCCCCCCCCCCCCCCCCcccccCCcccccCCCc-cccCC
Q 012709 160 NQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPI 238 (458)
Q Consensus 160 ~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~~~~~c~~~R~~~~~p~lC~~~~~~~~~wY~~l~~ci~~~~~~-~~~~~ 238 (458)
..+.|++|+++++++||++++++++++|||||.+++||.+|.....|++|+.++++|++||++|++||+++++. .++++
T Consensus 230 ~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~ 309 (506)
T PF03141_consen 230 LEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccc
Confidence 67789999999999999999999999999999999999999987889999988999999999999999999875 46789
Q ss_pred cccCCCccccccCCcchhc---cCCCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccc
Q 012709 239 EERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNA 315 (458)
Q Consensus 239 ~~~~~wp~rl~~~~~~~~~---~~~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~ 315 (458)
+++++||+||+++|+||+. .|+++|+|.+||++|+++|++||++++..++ |++|||||||||
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~---------------~~~iRNVMDMnA 374 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIK---------------WGRIRNVMDMNA 374 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccccc---------------ccceeeeeeecc
Confidence 9999999999999999997 7999999999999999999999998864444 559999999999
Q ss_pred cchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCCCCCCcchh
Q 012709 316 HFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDI 395 (458)
Q Consensus 316 ~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~ 395 (458)
|||||||||+ ++|||||||||+.++|||++||||||||+||||||+|||||||||||||++|||.+ .+||+|++|
T Consensus 375 g~GGFAAAL~--~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~---~~rC~~~~i 449 (506)
T PF03141_consen 375 GYGGFAAALI--DDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY---KDRCEMEDI 449 (506)
T ss_pred cccHHHHHhc--cCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhh---cccccHHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred hhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCC--CccEEEEEe
Q 012709 396 FTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 450 (458)
Q Consensus 396 ~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~k 450 (458)
||||||||||||++||||+.+++++|++|+++|||+++++++|+++ .||||||||
T Consensus 450 llEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 450 LLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999999999999987 499999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.97 E-value=6e-32 Score=279.63 Aligned_cols=200 Identities=22% Similarity=0.347 Sum_probs=152.9
Q ss_pred cCCcccccCCCccccCCcccCCCccccc------cCCcchhccC---------CCccccccchhhHHHHHHHHHHhhccc
Q 012709 222 PLQPCIGGTRNRRWIPIEERRNWPSRAN------LNKNELAVYG---------VHPEEFAEDTENWKTAVGNFWSLLSPL 286 (458)
Q Consensus 222 ~l~~ci~~~~~~~~~~~~~~~~wp~rl~------~~~~~~~~~~---------~~~~~f~~d~~~w~~~~~~y~~~~~~~ 286 (458)
.-..|+.|+|... ..+-+||+.-. .+.+.|+..+ -..-.|.-....+++.+.+|...|...
T Consensus 33 ~~~~CLVp~P~gY----k~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~ 108 (506)
T PF03141_consen 33 ERLRCLVPPPKGY----KTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEM 108 (506)
T ss_pred CCCccccCCCccC----CCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHH
Confidence 4457999988755 34679998653 3455565421 113346666667777777776544433
Q ss_pred ccCCCCCCCCCCCCCCCC-CceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc---cccccccc
Q 012709 287 IFSDHPKRPGDEDPSPPY-NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWC 361 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~-~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~ 361 (458)
+.. +-| +.||++||+|||+|||||+|+ +++|.+|+++|.+.+ ++.|+++|||+ ||++.+-.
T Consensus 109 ~~~------------~~~~g~iR~~LDvGcG~aSF~a~l~--~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~r 174 (506)
T PF03141_consen 109 IPL------------IKWGGGIRTALDVGCGVASFGAYLL--ERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQR 174 (506)
T ss_pred hhc------------cccCCceEEEEeccceeehhHHHHh--hCCceEEEcccccCCchhhhhhhhcCcchhhhhhcccc
Confidence 321 001 379999999999999999999 999999999999988 99999999997 56666666
Q ss_pred ccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe----------ccHHHHHHHHHHHhhccce
Q 012709 362 EAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----------DTARLIESARALTTRLKWD 431 (458)
Q Consensus 362 ~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~----------d~~~~~~~~~~~~~~~~w~ 431 (458)
.|||. +||||+|++++...|+.. - ..+|+|+|||||||||||+. |....++++++++++|||+
T Consensus 175 LPfp~--~~fDmvHcsrc~i~W~~~---~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~ 247 (506)
T PF03141_consen 175 LPFPS--NAFDMVHCSRCLIPWHPN---D--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK 247 (506)
T ss_pred ccCCc--cchhhhhcccccccchhc---c--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66665 999999977777777422 1 36999999999999999984 3467899999999999999
Q ss_pred EEEEeeccCCCccEEEEEecc
Q 012709 432 ARVIEIESNSDERLLICQKPF 452 (458)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~k~~ 452 (458)
....+ ..+.||||+.
T Consensus 248 ~va~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 248 KVAEK------GDTAIWQKPT 262 (506)
T ss_pred Hheee------CCEEEEeccC
Confidence 98887 6699999985
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.79 E-value=8.2e-19 Score=186.58 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccC--CCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~--~Lpfp~~sFD~I~~~~~l 118 (458)
+..+|||+|||+|.++..|++.+. +++|+|+++.|++.+++.. .++.+...|+. .+++++++||+|+|+.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 345899999999999999998753 8999999999999886542 35677777775 467888999999999988
Q ss_pred cccccc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++.++ ...+++++.|+|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 887643 3589999999999999999988654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.7e-18 Score=167.59 Aligned_cols=104 Identities=24% Similarity=0.253 Sum_probs=94.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCC-----eEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~-----~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
.+.+|||||||||.++..+++... ..+++++|+|++|+..|+++... +.+..+|++.|||+|++||+|.+++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 567999999999999999998754 78999999999999999998443 889999999999999999999999997
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++ +..++|+|++|||||||++++.+...
T Consensus 130 rnv~-d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 130 RNVT-DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred hcCC-CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 7777 78899999999999999999988755
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=2.6e-18 Score=166.67 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.+|||+|||||.++..++++..+..+|+++|+|++|++.|+++ ..++.+..+|++++|+++++||+|+|++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 4456999999999999999988755667999999999999999887 23789999999999999999999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+++ +..++|+|++|+|||||++++.+.
T Consensus 126 lrn~~-d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 126 LRNFP-DRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp GGG-S-SHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEeec
Confidence 77776 678899999999999999999886
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.74 E-value=2.1e-17 Score=162.99 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--------CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--------~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
+..+|||+|||+|.++..++++..+..+|+|+|+|++|++.|+++. .++.+..+|+..+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4579999999999999988876334468999999999999998652 26788999999999999999999999
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+++++. ++..+++|+.|+|||||++++.+...
T Consensus 153 ~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 153 YGLRNVV-DRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred cccccCC-CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 9877765 77889999999999999999998754
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.72 E-value=4.5e-17 Score=159.01 Aligned_cols=138 Identities=19% Similarity=0.293 Sum_probs=114.5
Q ss_pred ccccce--eccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHH
Q 012709 4 LEEEQI--SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ 81 (458)
Q Consensus 4 ~~~~~~--~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~ 81 (458)
+++..+ .|+..+..|+..+..++.+++.+..... .....+|||+|||+|.++..++..+. +++++|+|+.|
T Consensus 4 ~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~ 76 (251)
T PRK10258 4 VNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPM 76 (251)
T ss_pred cCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHH
Confidence 455566 8999999998877777777776654322 22456899999999999999987653 89999999999
Q ss_pred HHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 82 VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 82 i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.|+++.....+..+|.+.+|+++++||+|+|+.+ ++|..++..+|.++.|+|||||.++++.+..
T Consensus 77 l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 77 LAQARQKDAADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred HHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999866667788899999999999999999976 6677788899999999999999999998744
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.71 E-value=4.4e-17 Score=133.28 Aligned_cols=93 Identities=30% Similarity=0.446 Sum_probs=80.1
Q ss_pred EEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--CeEEEeeccCCCCCCCCCeeEEEeccccccccccHH
Q 012709 49 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 126 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~ 126 (458)
||+|||+|.++..|+++ +..+++++|+++++++.++++.. ...+...+...+|+++++||+|+|..+++++ .+..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 34599999999999999999843 4558999999999999999999999987777 5778
Q ss_pred HHHHHHHhcccCCcEEEE
Q 012709 127 ILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 127 ~~L~ei~RvLkPGG~lii 144 (458)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 9
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.60 E-value=1.2e-15 Score=146.11 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=93.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
...+|||||||-|.++..|++.|. +|+|+|+++.+++.|+.+ ++.+.+....++++....++||+|+|.++++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 456999999999999999999985 999999999999998865 5566677777777776668999999999999
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCccc
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA 153 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~ 153 (458)
|++ +++.+++.+.+++||||.+++++.+.+...
T Consensus 136 Hv~-dp~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 136 HVP-DPESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred ccC-CHHHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 998 778899999999999999999998775543
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=8.7e-15 Score=148.31 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=107.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..|++.+. +|+|+|+++.|++.|+++. .++.+..++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 346999999999999999988654 8999999999999998762 2577888888889888889999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccc-------------cccH----HHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF-------------LRNK----ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~-------------~~~~----e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++|+. ++..+++++.++|||||.+++++.......+ .... .....-+++..+++..+++.+.
T Consensus 208 LeHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 208 IEHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HHhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 88887 6788999999999999999999875532111 0000 0011236788889999998887
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
..+
T Consensus 287 ~~G 289 (322)
T PLN02396 287 MAG 289 (322)
T ss_pred Eee
Confidence 654
No 11
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.59 E-value=4.1e-14 Score=135.44 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=107.1
Q ss_pred eccccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC
Q 012709 10 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 89 (458)
Q Consensus 10 ~F~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~ 89 (458)
+|.+.+..|+....+++.+...+........ .....+|||+|||+|.++..+++.+ +..+++++|+++.+++.++++.
T Consensus 1 ~~~~~~~~y~~~~~~q~~~~~~l~~~~~~~~-~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~ 78 (240)
T TIGR02072 1 SFNKAAKTYDRHAKIQREMAKRLLALLKEKG-IFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKL 78 (240)
T ss_pred CcchhhhchhHHHHHHHHHHHHHHHHhhhhc-cCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhc
Confidence 3667777787666666666655543322111 1234689999999999999999875 4567999999999999998874
Q ss_pred C-CeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 90 L-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 90 ~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ++.+..+|...+++++++||+|+++.++++ ..++..++.++.++|+|||.++++++..
T Consensus 79 ~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~-~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 79 SENVQFICGDAEKLPLEDSSFDLIVSNLALQW-CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCCeEEecchhhCCCCCCceeEEEEhhhhhh-ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3 567888898889988899999999988554 4577889999999999999999998644
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.59 E-value=5.2e-15 Score=133.05 Aligned_cols=129 Identities=26% Similarity=0.442 Sum_probs=97.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..+++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 3456999999999999999988765 99999999999988 333444444445556789999999999988877
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCc------ccccc-cHH--H--HHHHHHHHHHHHhhccEEEE
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNP------QAFLR-NKE--N--QKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~------~~~~~-~~e--~--~~~w~~i~~l~~~~~w~~v~ 180 (458)
++..+|+++.++|||||+++++++.... ..+.. ... . ...-+++..++++.+|+.+.
T Consensus 93 -d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 -DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp -HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred -cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6889999999999999999999987531 00100 010 0 11126788888888888775
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=99.58 E-value=2.5e-14 Score=146.27 Aligned_cols=103 Identities=21% Similarity=0.300 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||||||+|.++..|+++. ..+++|+|+|+.|++.|+++ +. ++.+..+|+..+|+++++||+|+|..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence 345799999999999999999863 34899999999999988765 33 58899999999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++|+. +...+++++.|+|||||++++++..
T Consensus 195 ~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 195 SGEHMP-DKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred chhccC-CHHHHHHHHHHHcCCCcEEEEEEec
Confidence 988887 6678999999999999999998864
No 14
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.58 E-value=1.8e-14 Score=138.30 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=104.3
Q ss_pred ccchhhHHHHHHHHHhhhhcccc--------ccCCCCEEEEECCCCchhHHHHhhcCC-----ccceEEEEcCCHHHHHH
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNF--------ILAGVRTILDIGCGYGSFGAHLFSKEL-----LTMCIANYEASGSQVQL 84 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~--------~~~~~~~VLDVGCG~G~~~~~La~~~~-----~~~~v~gvD~S~~~i~~ 84 (458)
|...+.+++.+.+.+.....+++ .+....++||++||||..+..+++.-. ...+|+..|+++.|+..
T Consensus 66 F~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~v 145 (296)
T KOG1540|consen 66 FESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAV 145 (296)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHH
Confidence 44556677777777765544332 234458999999999999988877532 12689999999999998
Q ss_pred HHHcC----C----CeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 85 TLERG----L----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 85 A~er~----~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++|. . .+.+..+|++.|||++.+||....++.+.+++ ++++.|+|++|||||||+|.+-++
T Consensus 146 gkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 146 GKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred HHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 87773 2 37788999999999999999999999988888 788999999999999999998876
No 15
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=1.2e-14 Score=142.47 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=84.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
....+|||||||+|.++..++++. +..+++|+|+|+.|++.|++++ +.+..+|+..++ ++++||+|+|+.+++++.
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehhhhhCC
Confidence 345799999999999999999874 5568999999999999998875 556677777774 567999999998866554
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++..+++++.++|||||++++..+
T Consensus 104 -d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 104 -EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 778899999999999999999865
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=136.31 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=146.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...++|.|+|||+|..+..|+++ ++...++|+|.|++|++.|+++.+++.|..+|+.... |+..+|+++++.+ ++|.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhc
Confidence 45679999999999999999986 5889999999999999999999999999999988874 4578999999975 7887
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEeecC-CCcccccCC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRK 201 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~~-~~~c~~~R~ 201 (458)
.+-.++|..+...|.|||.+.+..|.... ......|++.+++..|.......-. -+++. ...-|.+..
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~d---------epsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL 174 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLD---------EPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL 174 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccC---------chhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh
Confidence 77778999999999999999999874422 1234556777776666554433211 23333 223333322
Q ss_pred CCCCCCCCCCCCCCCCcccccCCcccccCCCccccCCcccCCCccccccCCcchhccCCCccccccchhhHHHHHHHHHH
Q 012709 202 PGSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWS 281 (458)
Q Consensus 202 ~~~~p~lC~~~~~~~~~wY~~l~~ci~~~~~~~~~~~~~~~~wp~rl~~~~~~~~~~~~~~~~f~~d~~~w~~~~~~y~~ 281 (458)
. +.-|. -+-....||++|...-. -.+|+.+..+.||=++| |.+.|+.-+..|..
T Consensus 175 a---~~~~r-vDiW~T~Y~h~l~~a~a---IvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~ 228 (257)
T COG4106 175 A---PLACR-VDIWHTTYYHQLPGADA---IVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLA 228 (257)
T ss_pred C---cccce-eeeeeeeccccCCCccc---hhhheeccccceecccc-------------------CHHHHHHHHHHHHH
Confidence 1 23444 34566778877655421 13577777788776666 45778888888987
Q ss_pred hhc
Q 012709 282 LLS 284 (458)
Q Consensus 282 ~~~ 284 (458)
+|.
T Consensus 229 ~l~ 231 (257)
T COG4106 229 LLA 231 (257)
T ss_pred HHH
Confidence 765
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.56 E-value=3.2e-14 Score=140.47 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+..+|||||||+|..+..+++.. ..+++++|+|+.|++.|+++. .++.+...|....|+++++||+|++..+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 345699999999999999997642 358999999999999999873 357788888888899999999999988888
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.. +...+|+++.++|||||+++++++..
T Consensus 129 h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 129 HLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 8763 66789999999999999999998754
No 18
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=2e-14 Score=134.09 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=88.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeE-EEeeccCCCC-CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~-~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
....|||||||||....++-.. +..+|+++|+++.|-++|.++ ..++. +++++.+++| ++++|+|+|+|..
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred CccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3346899999999998888643 456999999999999887654 44555 8899999998 8999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|++... ++.+.|+|+.|+|||||++++.++..
T Consensus 154 vLCSve-~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 154 VLCSVE-DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEeccC-CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 988877 77899999999999999999999755
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.56 E-value=4.1e-14 Score=144.13 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=105.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||||||+|.++..+++.. +..+++++|.|+.|++.|+++. .++.+..+|...+++++++||+|+++.+++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 45699999999999998887753 3458999999999999998873 35678888999999999999999999887776
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccH--H---HHHHHHHHHHHHHhhccEEEEeeece
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--E---NQKRWNFVRDFVENLCWELVSQQDET 185 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--e---~~~~w~~i~~l~~~~~w~~v~~~~~~ 185 (458)
. ++..+|+++.|+|||||++++.++.... .+.... + ....-+++.+++++.+|+.+..+...
T Consensus 192 ~-d~~~~L~e~~rvLkPGG~LvIi~~~~p~-~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 192 P-DPQRGIKEAYRVLKIGGKACLIGPVHPT-FWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEEecCcc-hhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 6 6678999999999999999987653211 111000 0 01123677788888999988755433
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=1e-13 Score=133.45 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++...+..+++++|+|+.|++.|+++ + .++.+..+|...+++++++||+|++..++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 346999999999999999987643456899999999999998876 2 25778888888888888999999999875
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+. .+...+++++.++|+|||++++.++..
T Consensus 125 ~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 125 RNV-PDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred ccC-CCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 554 467789999999999999999987643
No 21
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=2.8e-14 Score=137.88 Aligned_cols=89 Identities=17% Similarity=0.208 Sum_probs=77.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..++++. ..+++|+|+|++|++.|+++. ....++++.+|+++++||+|+|+.+++++. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 5699999999999999998873 248999999999999998863 356788899999999999999999876655 7
Q ss_pred HHHHHHHHHhcccCC
Q 012709 125 DGILLLEVDRVLKPG 139 (458)
Q Consensus 125 ~~~~L~ei~RvLkPG 139 (458)
+.++++|+.|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 788999999999995
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.54 E-value=6.7e-14 Score=137.27 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++++. +|+++|+|+.|++.|+++ + .++.+..++...++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 446999999999999999999864 899999999999999876 2 25677888877763 6678999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++++. ++..++.++.++|||||++++.....
T Consensus 121 vl~~~~-~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 121 VLEWVA-DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHHhhC-CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 866655 77889999999999999999876543
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.53 E-value=7.3e-14 Score=132.11 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++.+|++++. +|+++|+|+.|++.|+++ +. ++.+...|...++++ ++||+|+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 46899999999999999999865 899999999999988765 33 366777787777765 6799999998866
Q ss_pred cccc-cHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQ-KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~-~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++.. +...+++++.++|||||++++..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 6553 34589999999999999966543
No 24
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=6.3e-14 Score=137.29 Aligned_cols=102 Identities=19% Similarity=0.268 Sum_probs=86.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..+|||||||+|.++..++++. +..+++|+|+|+.|++.|+++..++.+..+|...+. ++++||+|+|+.+++ |.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~-~~ 106 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQ-WL 106 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChh-hC
Confidence 345799999999999999998864 556999999999999999998777888888887664 456899999998755 44
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+...+++++.++|||||.+++..+
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5778899999999999999999864
No 25
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1e-13 Score=130.89 Aligned_cols=141 Identities=14% Similarity=0.224 Sum_probs=97.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.+|||+|||+|.++.+|++++. +|+++|+|+.|++.++++ ++++.+...|....+++ ++||+|+|+.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 46899999999999999998764 899999999999987654 55666667776666665 57999999988776
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeCCCCcccc-cccHHHHHHHHHHHHHHHhhccEEEEeeeceEEEeec
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAF-LRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKT 191 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~-~~~~e~~~~w~~i~~l~~~~~w~~v~~~~~~~iw~K~ 191 (458)
+.. +...+++++.|+|||||++++.......... ..........+++.+... .|+.+........|.+.
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 653 3458999999999999996665432211100 001112223455666665 47777765444444443
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.53 E-value=9.4e-14 Score=118.02 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=80.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeecc-CCCCCCCCCeeEEEecc-
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~-~~Lpfp~~sFD~I~~~~- 116 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++. .++.+...|. ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 3589999999999999999832 3558999999999999998873 5788999888 333333 5699999998
Q ss_pred cccccc--ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~--~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++.++. .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 433333 244589999999999999999976
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.52 E-value=7.7e-14 Score=125.98 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..|+++..+..+++|+|+|+.|++.|+++ +. ++.+...|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 346999999999999999995433567899999999999999884 44 5899999999887 66 8999999998
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++++. ++..+++++.++|++||.++++.+.
T Consensus 82 ~l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 765544 6778999999999999999999863
No 28
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.51 E-value=1.4e-13 Score=136.44 Aligned_cols=98 Identities=26% Similarity=0.356 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCc--cceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~--~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+|||+|||+|.++..+++.... ...++|+|+|+.|++.|.++..++.+.++|...+|+++++||+|++..+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999998875321 2378999999999999999888888999999999999999999998653
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+ ..+.|+.|+|||||+|+++.+..
T Consensus 161 ~----~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P----CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C----CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24689999999999999998755
No 29
>PRK08317 hypothetical protein; Provisional
Probab=99.50 E-value=1.2e-12 Score=124.97 Aligned_cols=105 Identities=27% Similarity=0.350 Sum_probs=90.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
....+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ ..++.+...|...+++++++||+|++..++
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3456999999999999999988643456899999999999999887 346778888888888888999999999987
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.++. ++..+++++.++|||||++++.++.
T Consensus 98 ~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 98 QHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 7776 6788999999999999999998864
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=4.3e-13 Score=142.82 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+..+|||||||+|..+..|++.. ..+++|+|+|+.|++.|+++ ..++.+..+|...+++++++||+|+|..+++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence 45699999999999999998753 45899999999999999876 2357888899888899889999999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+. ++..+++++.|+|||||.+++.++..
T Consensus 344 h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 344 HIQ-DKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ccC-CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 876 67889999999999999999998654
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.48 E-value=6.2e-13 Score=131.45 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=87.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|..+..+++...+..+++++|+++.|++.|+++ +. ++.+..++...+++++++||+|+++.+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV 155 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence 3557999999999988877766533445899999999999999876 32 677888899999998899999999876
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++ ..+...+++++.|+|||||++++++...
T Consensus 156 ~~~-~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INL-SPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccC-CCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 544 4466789999999999999999987543
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=3.6e-13 Score=131.73 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||||||+|..+..+++. ..+..+++++|+|+.|++.|+++ +. ++.+..+++..+|++ .+|+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 4468999999999999888763 23567999999999999999887 22 578888888888765 499999998
Q ss_pred cccccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+++++..+ ...+++++.++|||||.|++++..
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 87776533 347999999999999999999853
No 33
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=6.1e-14 Score=117.97 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=75.3
Q ss_pred EEEECCCCchhHHHHhhcC--CccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCCCCCCCCeeEEEeccc-ccc
Q 012709 48 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC-GVD 120 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~--~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~-l~~ 120 (458)
|||+|||+|..+..+.+.. .+..+++++|+|++|++.|+++. .++.+.++|...+++.+++||+|+|+.+ +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998764 13369999999999999998874 7899999999999988899999999655 666
Q ss_pred cccc-HHHHHHHHHhcccCCc
Q 012709 121 WDQK-DGILLLEVDRVLKPGG 140 (458)
Q Consensus 121 ~~~~-~~~~L~ei~RvLkPGG 140 (458)
+.++ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 5533 3489999999999998
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=4.5e-13 Score=133.86 Aligned_cols=132 Identities=14% Similarity=0.225 Sum_probs=94.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++.+|++++. +|+|+|+|+.+++.++++ +.++.+...|....++ +++||+|+|+.++++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 35899999999999999998765 899999999999987654 5677777777766655 578999999988766
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccccc-ccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-RNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
... +...+++++.++|+|||++++........... ........-.++.+.... |+.+.-.
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 553 34579999999999999977754322111100 011111223456666653 8777654
No 35
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=7.4e-13 Score=134.50 Aligned_cols=135 Identities=18% Similarity=0.185 Sum_probs=99.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH--Hc----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~--er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++..++..+.. .|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v 198 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV 198 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence 3479999999999999999987642 6999999999886432 22 2367888889999998 788999999998
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccc--cccHHH---------HHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF--LRNKEN---------QKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~--~~~~e~---------~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|.. ++..+|++++++|+|||.+++.+........ ....+. ...-..+..++++.+|+.+...
T Consensus 199 l~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 199 LYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred hhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 87765 7788999999999999999987543211000 000000 0122567778888888877543
No 36
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=7.1e-13 Score=126.23 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||||||+|.++..|++.. +..+++|+|+|+.|++.|+++...+.+..+++.. |+++++||+|+|+.+++|+..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCH
Confidence 45689999999999999998752 3458999999999999999876667777888777 889999999999999888863
Q ss_pred c-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 124 K-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 124 ~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+ ..++++++.|++ ++++++.+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 3 358999999998 578888775
No 37
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.44 E-value=7.5e-13 Score=128.50 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=86.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..++++. .+..+++|+|+|+.|++.|+++ ..++.+..+|...++++ .+|+|+|+.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 44689999999999999998753 3567999999999999999876 23578888898888775 489999998
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+++++.. +...+++++.|+|||||.++++++..
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8777653 34589999999999999999998643
No 38
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.44 E-value=1.6e-12 Score=131.38 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=97.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH---Hc---CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER---GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~---er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++..++..+. ..++|+|+|+.|+..+. +. ..++.+..++...+|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 357999999999999999888764 37999999999986532 21 23566777788888765 48999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccc--ccccHH---------HHHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA--FLRNKE---------NQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~--~~~~~e---------~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|+. ++..+|++++|+|||||.|++.+....... ...... ....-.++...+++.+|+.+...
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 88876 778899999999999999999764321100 000000 00113567788889999887644
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.44 E-value=4.7e-14 Score=117.89 Aligned_cols=92 Identities=28% Similarity=0.346 Sum_probs=59.8
Q ss_pred EEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCCC--CCCCCeeEEEeccccccc
Q 012709 49 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l~~~ 121 (458)
||||||+|.++..++++. +..+++++|+|+.|++.|+++ . .............. .+.++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999874 677999999999999777666 1 22333333333321 122599999999998877
Q ss_pred cccHHHHHHHHHhcccCCcEE
Q 012709 122 DQKDGILLLEVDRVLKPGGYF 142 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~l 142 (458)
.+...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 67789999999999999986
No 40
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.43 E-value=8.5e-13 Score=130.48 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCch----hHHHHhhcCC----ccceEEEEcCCHHHHHHHHHcC--------------------------
Q 012709 44 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG-------------------------- 89 (458)
Q Consensus 44 ~~~~VLDVGCG~G~----~~~~La~~~~----~~~~v~gvD~S~~~i~~A~er~-------------------------- 89 (458)
.+.+|+|+|||+|. ++..+++... ...+|+|+|+|+.|++.|++.-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555554321 2468999999999999998741
Q ss_pred ------CCeEEEeeccCCCCCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 90 ------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 90 ------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.+...|....+++.++||+|+|.++++++... ..++++++.++|+|||+|++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 14678888888888878999999999998888643 34899999999999999999653
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.43 E-value=1.6e-12 Score=124.60 Aligned_cols=134 Identities=22% Similarity=0.288 Sum_probs=97.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
++|||||||+|.++..+++.. +..+++|+|+|+.+++.|+++ +. ++.+...|....+++ ++||+|++..+++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~ 78 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH 78 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence 379999999999999998864 456899999999999999876 22 467777787666665 5899999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCccccccc---HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~---~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
|+. +...+|+++.++|||||++++.++.......... ........++.+++++.+++.+...
T Consensus 79 ~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 79 HIK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred hCC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 776 5678999999999999999999864321100000 0001112445566777788776544
No 42
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.42 E-value=8.9e-12 Score=133.80 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... +++.++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 4689999999999999988753 556999999999999999876 33 45666666432 2445689999996321
Q ss_pred cccc---------------------cc----HHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWD---------------------QK----DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~---------------------~~----~~~~L~ei~RvLkPGG~liis~ 146 (458)
+... .+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1100 01 1246778899999999998864
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.40 E-value=8.5e-12 Score=117.30 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=93.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|..+..++.+. +..+|+++|+++.|++.|+++ +. ++.+..++...++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999988743 467999999999999988765 33 47888888888776 679999998742
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.+...+++++.++|||||++++..... .-.++..+++..+|.+..+-
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~-------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD-------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC-------------hHHHHHHHHHhcCceEeeeE
Confidence 245679999999999999999987532 12346777787899877654
No 44
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.40 E-value=3.9e-13 Score=129.86 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=82.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC-----------CeEEEeeccCCCCCCCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----------PAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~-----------~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
+++|||||||+|.++..|++.|. +|+|+|+++.|++.|+++.. ...+.+.+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 37899999999999999999885 89999999999999998721 1223334444432 4599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
|+.+++|+. +++.++..+.+.|||||.+++++-....
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 999999987 7788999999999999999999876543
No 45
>PRK06922 hypothetical protein; Provisional
Probab=99.37 E-value=2.1e-12 Score=139.73 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC--CCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~ 117 (458)
+..+|||+|||+|.++..+++.. +..+++|+|+|+.|++.|+++ +.++.+..+|...+| +++++||+|+++.+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35699999999999998888753 677999999999999999876 345677788888887 88899999999988
Q ss_pred ccccc------------ccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~------------~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++++. .+...+|+++.|+|||||++++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 76652 23458999999999999999999853
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.36 E-value=1.2e-11 Score=116.48 Aligned_cols=133 Identities=17% Similarity=0.265 Sum_probs=90.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH----HHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A----~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.++||+|||.|..+.+|+++|+ .|+++|.|+..++.+ .++++++.....|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 46999999999999999999998 899999999888654 45588888899998887776 68999999877666
Q ss_pred cccc-HHHHHHHHHhcccCCcEEEEEeCCCCccccc-ccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 121 WDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-RNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 121 ~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
...+ ...++..+...++|||++++.........+. .+.+....-.++..... .|+++.-..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEc
Confidence 6543 3478999999999999998865433221111 11112222244555555 698887443
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.36 E-value=1.7e-11 Score=116.40 Aligned_cols=103 Identities=23% Similarity=0.274 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+..+|||+|||+|.++..+++......+++++|+++.+++.++++. .++.+...+...+++++++||+|+++.++++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN 118 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence 4579999999999999999887532268999999999999998874 2577888888888888889999999987655
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. ++..+++++.++|+|||++++.+.
T Consensus 119 ~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 119 VT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 55 677899999999999999999775
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.35 E-value=6.2e-12 Score=119.45 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeecc-CCCC--CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFAS-KQLP--YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~-~~Lp--fp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..+++.. +..+++++|+|+.|++.|+++ + .++.+..+|+ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 45699999999999999998753 556899999999999998765 3 3578888888 6666 778899999987
Q ss_pred cccccccc--------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .+|.. ....+++++.++|||||+|+++..
T Consensus 119 ~~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FP-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CC-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 64 33321 135689999999999999999875
No 49
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.34 E-value=1e-11 Score=115.87 Aligned_cols=99 Identities=23% Similarity=0.287 Sum_probs=83.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||.|.+..+|.+. ...+..|+|++++.+..|.++|+++.-..++..-..|++++||.|+++.++.+.. +
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-~ 90 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-R 90 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh-H
Confidence 469999999999999999874 3558999999999999999999997777666543359999999999999877766 7
Q ss_pred HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 125 DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 125 ~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|..+|+|+.|+ |...+++.|+.
T Consensus 91 P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 91 PDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHh---cCeEEEEecCh
Confidence 88999999776 66788888765
No 50
>PRK06202 hypothetical protein; Provisional
Probab=99.33 E-value=8.5e-12 Score=120.57 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||+|||+|.++..|++. ..+..+++|+|+|+.|++.|+++. .++.+...+...+++++++||+|+|+.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 34579999999999998888752 123468999999999999998873 3456666677777777889999999999
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
++|+.+. ...+|+++.|+++ |.+++.+..
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEeccc
Confidence 8888643 2479999999998 666666643
No 51
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.33 E-value=3.4e-11 Score=115.47 Aligned_cols=105 Identities=25% Similarity=0.227 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||+|||+|.++..++.......+++++|+++.+++.++++. .++.+...|...++++.++||+|+++.+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 3469999999999999999887522469999999999999998862 3567888888888887889999999988
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++. +...+|.++.++|+|||.+++.+...
T Consensus 131 l~~~~-~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVP-DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCC-CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 66655 67789999999999999999887543
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=1.4e-11 Score=122.28 Aligned_cols=100 Identities=24% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||-|.++.+++++. +++|+|+.+|++|.+.|+++ |+ .+.+...|..+++. +||.|+|..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 456799999999999999999982 34899999999999998766 43 47777777776654 899999999
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++.|+.. +-..+++++.++|||||.+++...
T Consensus 136 ~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 136 MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred chhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999853 456899999999999999998764
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.30 E-value=1.7e-11 Score=117.64 Aligned_cols=100 Identities=14% Similarity=-0.035 Sum_probs=81.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH-cC----------------CCeEEEeeccCCCCCC-C
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RG----------------LPAMIGSFASKQLPYP-S 106 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e-r~----------------~~~~~~~~d~~~Lpfp-~ 106 (458)
..+|||+|||.|..+.+|+++|+ +|+|+|+|+.+++.+.+ ++ .++.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 35999999999999999999987 89999999999998533 22 3567788888777642 3
Q ss_pred CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.||.|+-..+++|++.+. ..+++.+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 6799999988888887554 3799999999999998666644
No 54
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.30 E-value=2.9e-11 Score=113.02 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=76.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++..++... +..+++++|.|+.|++.++++ +. ++.+..+|+..++ .+++||+|+|.. +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh
Confidence 5699999999999999987654 456899999999999877654 44 5788888888764 357899999864 22
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+...+++.+.++|+|||.+++...
T Consensus 120 ----~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 120 ----SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 345688899999999999998753
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=1.4e-11 Score=115.37 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..-+++||+|||.|.++..|+.+.- +++++|+|+.+++.|++|- .++.+.+++.... .|+++||+||++.+++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred cccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 3446899999999999999999853 8999999999999999983 4688888877554 5779999999999988
Q ss_pred cccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQ--KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~--~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.+ +...++..+...|+|||.+++...
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 8864 234789999999999999999875
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.28 E-value=6.9e-11 Score=109.73 Aligned_cols=121 Identities=17% Similarity=0.107 Sum_probs=89.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..++..+. +++++|+|+.|++.++++ +..+.+..+|....+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCC
Confidence 35899999999999999998763 899999999999998875 456667777765543 458999999976554
Q ss_pred cccc--------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 121 WDQK--------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 121 ~~~~--------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.... ...++.++.++|||||.+++..+.... -.++...+++.+|....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEE
Confidence 4321 235799999999999999998753310 13445566666776665
Q ss_pred ee
Q 012709 181 QQ 182 (458)
Q Consensus 181 ~~ 182 (458)
..
T Consensus 163 ~~ 164 (179)
T TIGR00537 163 VA 164 (179)
T ss_pred EE
Confidence 43
No 57
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.28 E-value=2.5e-11 Score=126.12 Aligned_cols=100 Identities=25% Similarity=0.319 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
.+..+|||||||+|.++.++++.. ..+|+|+|+|++|++.|+++. ..+.+...|...+ +++||.|++..++.|
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~eh 240 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEH 240 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhh
Confidence 345699999999999999998752 348999999999999998873 3456666665544 478999999988887
Q ss_pred ccc-cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQ-KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~-~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.. +...+++++.++|||||++++...
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 743 346899999999999999999875
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.27 E-value=3.5e-11 Score=113.52 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=81.3
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC---CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp---fp~~sFD~I~~~~ 116 (458)
..+|||||||+|.++..++.+. +..+++|+|+++.+++.|+++ +. ++.+..+|+..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3589999999999999999864 677999999999999988765 22 6788888876653 5667999999876
Q ss_pred ccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .+|.... ..+++++.|+|||||.|++...
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 4454321 4689999999999999999874
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.26 E-value=6.3e-11 Score=113.44 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=95.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC------CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++. .++.+...|...++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 457999999999999999998653 8999999999999998762 25778888877765 78999999988
Q ss_pred cccccc-cHHHHHHHHHhcccCCcEEEEEeCCCCccc--------cccc----HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 118 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNPQA--------FLRN----KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 118 l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~~~~--------~~~~----~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++|++. +...+++++.+++++++++.+..... ... +... ......-+++.++++..+|+.+..+
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFAPKTA-WLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG 205 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEECCCch-HHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence 888753 34578999999999877766543211 000 0000 0000112567788888888888654
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.23 E-value=8.8e-11 Score=100.96 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.+++.|+++ + .++.+...+... ++...++||.|++..+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 4599999999999999999864 446899999999999998764 2 246666666544 33334689999987642
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
. ....+++++.++|+|||++++..
T Consensus 99 ~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 99 G----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred h----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 23479999999999999999875
No 61
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=3.1e-10 Score=106.08 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..+++++ +..+++++|+++.+++.|+++ +. ++.+..++.. .+++ ++||+|++....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~ 107 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSG 107 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCc
Confidence 34699999999999999998864 567999999999999998765 22 4566666653 3343 679999987642
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
. ....++.++.++|+|||++++..... ....++...+++.+|+.+.
T Consensus 108 ~----~~~~~l~~~~~~Lk~gG~lv~~~~~~------------~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 108 G----NLTAIIDWSLAHLHPGGRLVLTFILL------------ENLHSALAHLEKCGVSELD 153 (187)
T ss_pred c----CHHHHHHHHHHhcCCCeEEEEEEecH------------hhHHHHHHHHHHCCCCcce
Confidence 2 33568899999999999999876421 1234555677777886554
No 62
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.22 E-value=1.6e-10 Score=116.31 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ +. ++.+..+|....++++ +|+|++++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh
Confidence 345799999999999999999875 6779999997 7888888765 33 4678888877666653 69999998
Q ss_pred ccccccccH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++|.++. ..+|+++++.|+|||++++.+...
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 888786543 479999999999999999998644
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.22 E-value=5.2e-10 Score=103.32 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC-eEEEe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS 96 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~-~~~~~ 96 (458)
+.-.+.+.+.+... ...+|||+|||+|.++..+++++ +..+++++|+++.+++.|+++ +.. +.+..
T Consensus 17 d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~ 87 (170)
T PF05175_consen 17 DAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQ 87 (170)
T ss_dssp HHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccc
Confidence 34444555555432 34689999999999999999875 566799999999999999775 444 77777
Q ss_pred eccCCCCCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 97 FASKQLPYPSLSFDMLHCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 97 ~d~~~Lpfp~~sFD~I~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.|... +.++++||+|+|+--++.-.. ...+++.+..+.|||||.+++...
T Consensus 88 ~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 88 SDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp SSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 66543 344689999999865333322 124789999999999999987664
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.21 E-value=3.5e-10 Score=108.12 Aligned_cols=136 Identities=17% Similarity=0.272 Sum_probs=99.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC-CCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp-~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.+. +++++|+++.+++.++++ +. ++.+...+....+.. .++||+|+++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 356999999999999999988653 699999999999988775 33 467777777666544 378999999987
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc-------------cc-HH---HHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL-------------RN-KE---NQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~-------------~~-~e---~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+.+.. ++..+++++.++|+|||.++++.......... .. .. ......++.++++..+++.+.
T Consensus 122 l~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 122 LEHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred HHhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 66655 77889999999999999999987643210000 00 00 000124577788888898887
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
...
T Consensus 201 ~~~ 203 (224)
T TIGR01983 201 VKG 203 (224)
T ss_pred eee
Confidence 553
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.21 E-value=3.9e-10 Score=112.91 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ +.. +.+...+ ..+..+++||+|+++..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~- 234 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANIL- 234 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecC-
Confidence 47999999999999998887653 4899999999999999876 222 2333332 23445678999999753
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ ....++.++.++|||||++++++.
T Consensus 235 ~~---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 235 AE---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HH---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 21 234689999999999999999986
No 66
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.21 E-value=2.1e-10 Score=110.66 Aligned_cols=135 Identities=16% Similarity=0.287 Sum_probs=98.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC-CCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++.+. +++++|+++.+++.|+++ +..+.+...+....+ ..+++||+|+++.++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 456899999999999999988653 799999999999988875 445666666666554 345789999999887
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc--------------ccHHHHH---HHHHHHHHHHhhccEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL--------------RNKENQK---RWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~--------------~~~e~~~---~w~~i~~l~~~~~w~~v~~ 181 (458)
.+.. ++..+|+++.++|+|||.++++.+........ ....... .-.++.+++...+++.+..
T Consensus 125 ~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~ 203 (233)
T PRK05134 125 EHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDI 203 (233)
T ss_pred hccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeee
Confidence 7665 66789999999999999999987643211000 0000000 1245777888888888865
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 204 ~ 204 (233)
T PRK05134 204 T 204 (233)
T ss_pred e
Confidence 4
No 67
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=2.8e-10 Score=112.63 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
.++.+|||||||-|.++.+++++. +.+|+|+++|++|.+.++++ |.. +++...|-..+ .+.||-|+|..
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---~e~fDrIvSvg 145 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---EEPFDRIVSVG 145 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---ccccceeeehh
Confidence 456899999999999999999973 34999999999999988875 443 55555554444 35599999999
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
++.|+.. +-..+|+.+.++|+|||.+++.+....
T Consensus 146 mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 146 MFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred hHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 9999874 355899999999999999999876543
No 68
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.20 E-value=2.8e-11 Score=115.74 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCC------eEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP------AMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~------~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.++|+|||+|..++-++... . +|+|+|+|+.|++.|.+.... ......+...|--.++|.|+|+|.+|
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~-k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHY-K--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhh-h--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 33589999999997777777753 3 899999999999999887322 22222222233223799999999998
Q ss_pred cccccccHHHHHHHHHhcccCCc-EEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGG-YFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG-~liis~ 146 (458)
+||. +.+++++++.|+||+.| .+++-.
T Consensus 110 -~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 110 -VHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred -HHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 8888 45779999999998876 555544
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=99.18 E-value=2.6e-10 Score=113.88 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCchhHHHH-hhcCCccceEEEEcCCHHHHHHHHHcC-------CCeEEEeeccCCCCCCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHL-FSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~L-a~~~~~~~~v~gvD~S~~~i~~A~er~-------~~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
.+++|+|||||.|.++..+ +....+..+++++|.++++++.|++.- ..+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 6689999999988554443 434457779999999999999998752 25888888887764334789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 116 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 116 ~~l~~~~-~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++++|. .+..++|+++.+.|+|||++++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 567799999999999999999986
No 70
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=118.65 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=91.1
Q ss_pred ceeccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH
Q 012709 8 QISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 85 (458)
Q Consensus 8 ~~~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A 85 (458)
.+.|...+..| ++.+.-.+.+.+.++. ....+|||+|||+|.++..+++++ +..+++++|+|+.+++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 34455555555 2345555555555542 122589999999999999999875 567999999999999999
Q ss_pred HHc----CC----CeEEEeeccCCCCCCCCCeeEEEecccccccc---cc-HHHHHHHHHhcccCCcEEEEEeC
Q 012709 86 LER----GL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD---QK-DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 86 ~er----~~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~---~~-~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+++ +. ++.+...|... .+++++||+|+|+-.++... .+ ..++++++.++|+|||.|+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 875 22 34555555432 23456899999987654322 11 23789999999999999999863
No 71
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=1.1e-10 Score=111.66 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEec
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~~ 115 (458)
...+|||+|||+|.++..++++..+...|+++|+++ |. ...++.+..+|+...+ +.+++||+|+|+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 456999999999999999998754556899999988 21 2245778888887753 667899999997
Q ss_pred cccccccccH-----------HHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~-----------~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .++..++ ..+|+++.++|||||.|++..+
T Consensus 125 ~~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 125 MA-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CC-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 54 4443221 3589999999999999999775
No 72
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.18 E-value=1.8e-10 Score=110.91 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=78.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH-HcCC----------------CeEEEeeccCCCCCC-C
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 106 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~-er~~----------------~~~~~~~d~~~Lpfp-~ 106 (458)
..+|||+|||.|..+.+|+++|+ +|+|+|+|+.+++.+. ++++ ++.+.++|...++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 35999999999999999999887 8999999999999763 3333 356677887777533 2
Q ss_pred CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE
Q 012709 107 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis 145 (458)
+.||.|+-..++++++... .+++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999888888887543 48999999999999975543
No 73
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=1.9e-10 Score=109.49 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|..+..+++......+++++|+++++++.|+++ +. ++.+..+|........++||+|++..+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 151 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA 151 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence 446999999999999998887532345899999999999988765 33 367888887665445578999999876
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+.+. ..++.++|+|||++++..
T Consensus 152 ~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 ASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cchh-------hHHHHHhcCcCcEEEEEE
Confidence 5443 247889999999998865
No 74
>PTZ00146 fibrillarin; Provisional
Probab=99.17 E-value=5e-10 Score=111.52 Aligned_cols=158 Identities=13% Similarity=0.017 Sum_probs=103.6
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHH----HHHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~----~i~~A~er~~~~ 92 (458)
.|-..+.+...++..+....+.+.. ....+|||+|||+|.++.++++..-+...|+++|+++. +++.|.++ .++
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~I-kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI 183 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPI-KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNI 183 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceecc-CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCC
Confidence 4666677778888777544444433 34469999999999999999987544568999999986 45555544 456
Q ss_pred EEEeeccCC---CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~---Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.+...|+.. +..+.++||+|++... . ++....++.++.++|||||+|++....... ....+++..-. +++ +
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ika~~i-d~g~~pe~~f~-~ev-~ 257 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIKANCI-DSTAKPEVVFA-SEV-Q 257 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEecccc-ccCCCHHHHHH-HHH-H
Confidence 666677643 2223468999998753 2 323346777999999999999996443221 11122333222 445 5
Q ss_pred HHHhhccEEEEee
Q 012709 170 FVENLCWELVSQQ 182 (458)
Q Consensus 170 l~~~~~w~~v~~~ 182 (458)
.++..+|+.+.+.
T Consensus 258 ~L~~~GF~~~e~v 270 (293)
T PTZ00146 258 KLKKEGLKPKEQL 270 (293)
T ss_pred HHHHcCCceEEEE
Confidence 5677788766543
No 75
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.17 E-value=1.4e-10 Score=115.05 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=93.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHc-CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER-GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er-~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+++|||||||.|.++..++.+|.. .|+|+|++.-... ++++- +. .+.......+.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 4579999999999999999998754 7999999986432 22222 22 23334457888887 689999999999
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeCCCCccc---------cc--ccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQA---------FL--RNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~---------~~--~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
++|.. +|-..|+++...|+|||.+++-+....-.. +. ++.-....-..+...+++.+|+.+.
T Consensus 192 LYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 192 LYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred hhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 99977 778899999999999999998765431100 00 0000011125677777777877665
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.16 E-value=3.5e-10 Score=115.90 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=78.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
.+|||+|||+|.++..++++. +..+++++|+|+.|++.|+++ +....+...|... ..++.||+|+|+..++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 489999999999999999864 456899999999999988764 4555666555433 235789999999875542
Q ss_pred c----ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 D----QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~----~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. .....+++++.+.|||||.++++..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 1235799999999999999999875
No 77
>PRK04266 fibrillarin; Provisional
Probab=99.15 E-value=6.5e-10 Score=107.60 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=87.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCC----CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQL----PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~L----pfp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|.++..+++.. ...+|+++|+++.|++.+.++ ..++.+..+|.... +++ ++||+|++..
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~ 149 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV 149 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence 44699999999999999998864 245899999999988855433 13566777776531 233 5699999652
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
. . +.....++.++.|+|||||+++++.+... ..+...+ ....++..+.++..+|+.+....
T Consensus 150 ~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-~d~~~~~--~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 150 A-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARS-IDVTKDP--KEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred C-C--hhHHHHHHHHHHHhcCCCcEEEEEEeccc-ccCcCCH--HHHHHHHHHHHHHcCCeEEEEEc
Confidence 2 1 11223568999999999999999643211 1111111 12234445777778888776543
No 78
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.15 E-value=7e-10 Score=104.40 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=90.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC-C-CCCCCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~-L-pfp~~sFD~I~~~~~l~~~~ 122 (458)
..+|||+|||+|.++..+++.. ...++++|+|+++++.|+++++ .+..+++.. + ++++++||+|+|+.+++|..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 3589999999999999987653 3368999999999999987764 455566544 4 47788999999999877665
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcc--------------------cccc-cHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------------------AFLR-NKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~--------------------~~~~-~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
++..+++++.|++++ .+++.+..... .+.. ........+++.+++++.+++.+..
T Consensus 90 -d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~ 165 (194)
T TIGR02081 90 -NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDR 165 (194)
T ss_pred -CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEE
Confidence 678899999887664 44443322100 0000 0111223567888888888888775
Q ss_pred e
Q 012709 182 Q 182 (458)
Q Consensus 182 ~ 182 (458)
.
T Consensus 166 ~ 166 (194)
T TIGR02081 166 A 166 (194)
T ss_pred E
Confidence 4
No 79
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.15 E-value=1.7e-11 Score=116.27 Aligned_cols=136 Identities=19% Similarity=0.245 Sum_probs=99.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-C-CCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-P-YPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-p-fp~~sFD~I~~~~~l~~~ 121 (458)
.-+++||+|||||..+..|...-. +++|+|+|++|+++|.+++..-.+.+++...+ + ..++.||+|++..|+...
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 367999999999999999987543 79999999999999999988666666665432 2 456789999999985554
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeCCCCccccccc-HHHHHH--HHHHHHHHHhhccEEEEeee
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN-KENQKR--WNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~-~e~~~~--w~~i~~l~~~~~w~~v~~~~ 183 (458)
- +.+.++.-+...|+|||.|+||.-.....+.... +..+.. -.-+...++..+++.+..+.
T Consensus 202 G-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 202 G-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred c-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 4 6677999999999999999999754322110010 111111 23456778888998887664
No 80
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.14 E-value=1.3e-09 Score=105.96 Aligned_cols=98 Identities=22% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...++||||+|.|..+..++... . +|+++|.|..|....++||..+. +..+..-.+.+||+|.|.++ +.-..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~--~v~aTE~S~~Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~ 165 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-K--EVYATEASPPMRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCD 165 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-c--eEEeecCCHHHHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccC
Confidence 45689999999999999998753 3 79999999999999999986533 33333333567999999986 67777
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+|..+|+++++.|+|+|+++++.-.+
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 89999999999999999999986444
No 81
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.14 E-value=2.9e-10 Score=107.47 Aligned_cols=100 Identities=25% Similarity=0.272 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc-CCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~-~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...-|||||||+|..+..|...|. ..+|+|+|+.|++.|.++-+...+...|+ +-+||+.++||.+++..+ ++|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeee
Confidence 456899999999999999998875 79999999999999998755544444443 668999999999998754 4552
Q ss_pred -------ccHH----HHHHHHHhcccCCcEEEEEeC
Q 012709 123 -------QKDG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 -------~~~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
.+|. .++..++.+|++|++.++...
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 1222 467789999999999999875
No 82
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.13 E-value=1.4e-10 Score=99.39 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=79.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC--CCCCCeeEEEeccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCARC 117 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~ 117 (458)
.+|||+|||+|.++..+++.+ ..+++++|+++..++.|+++ + .++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999886 45999999999999999876 2 36788998887764 78899999999865
Q ss_pred cccccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...... ....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 443221 123689999999999999999864
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=5.3e-10 Score=107.06 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||||||+|.++..+++...+..+++++|+++.+++.|+++ +. ++.+..+|......+.+.||+|++....
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 457999999999999999887643446899999999999999876 33 5788888877665566889999987653
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+ ....+.+.|||||++++..
T Consensus 156 ~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 156 PD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred cc-------chHHHHHhhCCCcEEEEEE
Confidence 22 2346677899999999864
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.13 E-value=1e-09 Score=103.76 Aligned_cols=118 Identities=20% Similarity=0.173 Sum_probs=85.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
...+|||+|||+|.++..+++...+..+++++|+++.+++.|+++ + .++.+..+|.... +..++.||.|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 446999999999999999876532345899999999999988765 3 2566777776543 33346899999853
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 177 (458)
. ......++.++.++|||||++++.... ....+++...+++.+|+
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~~------------~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAIL------------LETVNNALSALENIGFN 164 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEeec------------HHHHHHHHHHHHHcCCC
Confidence 2 224567999999999999999985531 12234555666667774
No 85
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.12 E-value=1.1e-09 Score=111.02 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=85.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----------CCeEEEeeccCCCCCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----------~~~~~~~~d~~~Lpfp~~sFD~I~~ 114 (458)
..+|||+|||+|.++..|++++. +|+|+|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 46999999999999999998764 8999999999999998872 1345666665443 578999999
Q ss_pred ccccccccccHH-HHHHHHHhcccCCcEEEEEeCCCCccccc--------ccH-----HHHHHHHHHHHHHHhhccEEEE
Q 012709 115 ARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFL--------RNK-----ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 115 ~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~--------~~~-----e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..+++|++.+.. .+++.+.+ +.+||. +++..+....... ..+ .....-++++++++..+|+...
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 999888875433 45666664 455555 4444322110000 000 0000125677888888888664
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=99.12 E-value=8.3e-10 Score=106.25 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.+. .+++++|+++.+++.|+++ +.++.+...|... .+++++||+|+|+-....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 46999999999999999988642 4899999999999988765 4566677777654 356678999999743222
Q ss_pred ccc--------------------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~~--------------------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.. ....+++++.++|||||.+++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 111 023577889999999999998764
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.12 E-value=2.5e-09 Score=104.91 Aligned_cols=118 Identities=20% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
...+|||+|||+|.++..+++.+.. +++++|+|+.+++.|+++.....+. +...++..+.+||+|+|+.. . .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~-~---~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANIL-A---N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCc-H---H
Confidence 4579999999999999988876642 6999999999999998762110000 00011122227999998743 1 1
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
....++.++.++|||||++++++... ...+.+...+...+|..+..
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~------------~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE------------EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH------------hhHHHHHHHHHHCCCEEEEE
Confidence 23468899999999999999997632 12345666777778877654
No 88
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.12 E-value=3.7e-10 Score=116.67 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=83.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC--CCCCCCeeEEEeccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 117 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L--pfp~~sFD~I~~~~~ 117 (458)
...+||||||+|.++..++.+. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .++++++|.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4589999999999999999975 677999999999998877655 33 677888887654 578899999998764
Q ss_pred cccccccH------HHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~------~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+|+... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5665432 4689999999999999999763
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=100.15 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..++|||+|||+|.++..+++++ .+++++|.|+.+++.++++ +.. +.+...|... ++++.+||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECC
Confidence 34689999999999999999874 4899999999999988665 322 6666666544 45556899999875
Q ss_pred cccccc--------------------ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 117 CGVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 117 ~l~~~~--------------------~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
.+.+.. .....+++++.++|||||.+++..+... . .+.+..+..+.+|
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~------~~~l~~~~~~~g~ 166 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------G------EDEVLEYLEKLGF 166 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------C------HHHHHHHHHHCCC
Confidence 433211 0123579999999999999988765221 1 1345566777787
Q ss_pred EEEE
Q 012709 177 ELVS 180 (458)
Q Consensus 177 ~~v~ 180 (458)
+...
T Consensus 167 ~~~~ 170 (188)
T PRK14968 167 EAEV 170 (188)
T ss_pred eeee
Confidence 6654
No 90
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.10 E-value=9.4e-10 Score=105.45 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
+..+|||||||+|.++..|++.+. +++++|+|+.|++.|+++ +. ++.+..+| ++..+++||+|+|..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 456999999999999999998764 799999999999999876 22 45666665 4455688999999998
Q ss_pred ccccccc-HHHHHHHHHhcccCCcEE
Q 012709 118 GVDWDQK-DGILLLEVDRVLKPGGYF 142 (458)
Q Consensus 118 l~~~~~~-~~~~L~ei~RvLkPGG~l 142 (458)
++|+... ...+++++.+++++++.+
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 8787643 347888888877544443
No 91
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.08 E-value=8.4e-10 Score=105.64 Aligned_cols=97 Identities=21% Similarity=0.148 Sum_probs=75.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....+|||+|||+|.++..|++......+|+++|+++.+++.|+++ +. ++.+..+|........+.||+|++..+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 3457999999999999999988754345799999999999998876 33 577888887655444468999998754
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
..+ +...+.+.|+|||++++..
T Consensus 156 ~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 GPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccc-------ccHHHHHhcCcCcEEEEEE
Confidence 322 3456788999999999865
No 92
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9.5e-10 Score=109.71 Aligned_cols=121 Identities=21% Similarity=0.301 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCC-CCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~-~sFD~I~~~~~l 118 (458)
++++|||+|||+|.++...++.|.. .++|+|+.+.+++.|+++ +++..........+..+. +.||+|+|+-.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh-
Confidence 5679999999999999999998864 799999999999998876 343211111112223333 58999999842
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-+ -..++..++.+.|||||++++|+... ..-+.+.+.+.+.+|.++...
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGIl~------------~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGILE------------DQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEeehH------------hHHHHHHHHHHhCCCeEeEEE
Confidence 22 22368889999999999999998522 123445566666788777643
No 93
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.07 E-value=3.7e-09 Score=102.56 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=87.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+|||+|||+|.++..++... +..+++++|+++.+++.|+++ +. ++.+..+|... ++++++||+|+|+-...
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999999853 456899999999999988765 33 37777777655 46678999999964322
Q ss_pred c------cccc-------------------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhh
Q 012709 120 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 174 (458)
Q Consensus 120 ~------~~~~-------------------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 174 (458)
. +... ...++.++.++|+|||.+++..... .-+.+.+.+.+.
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-------------~~~~~~~~l~~~ 232 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-------------QGEAVRALFEAA 232 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-------------HHHHHHHHHHhC
Confidence 1 1100 1256889999999999999975311 113456666667
Q ss_pred ccEEEE
Q 012709 175 CWELVS 180 (458)
Q Consensus 175 ~w~~v~ 180 (458)
+|+.+.
T Consensus 233 gf~~v~ 238 (251)
T TIGR03534 233 GFADVE 238 (251)
T ss_pred CCCceE
Confidence 776554
No 94
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.1e-09 Score=108.81 Aligned_cols=130 Identities=20% Similarity=0.269 Sum_probs=94.9
Q ss_pred ceeccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH
Q 012709 8 QISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 85 (458)
Q Consensus 8 ~~~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A 85 (458)
.+.|-...-.| +..+.-.+.+.+.++.. ...+|||+|||.|.++..|++.. |..+++-+|++..+++.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA 198 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence 34555555555 55666667777777542 22389999999999999999976 578999999999999999
Q ss_pred HHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHH----HHHHHHHhcccCCcEEEEEeC
Q 012709 86 LER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 86 ~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
+++ ++....+..+....+..+ +||+|+|+--++.-..-.. +++.+..+.|++||.|.++..
T Consensus 199 r~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 199 RKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 887 333312222223344554 8999999977655433222 789999999999999999986
No 95
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.06 E-value=1.6e-09 Score=108.67 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=83.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
+.++|||+|||+|.++...++.|.. +|+++|+++.+++.|+++ ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 4469999999999999999998754 899999999999998887 4444443322 22344589999998842 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+ -...++..+.++|+|||++++|+... ...+.+.+.+++ +|+.+...
T Consensus 236 ~---vL~~l~~~~~~~l~~~G~lIlSGIl~------------~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 236 D---VLLELAPDIASLLKPGGYLILSGILE------------EQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp H---HHHHHHHHCHHHEEEEEEEEEEEEEG------------GGHHHHHHHHHT-TEEEEEEE
T ss_pred H---HHHHHHHHHHHhhCCCCEEEEccccH------------HHHHHHHHHHHC-CCEEEEEE
Confidence 1 12357778999999999999998622 123445555666 88877654
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.05 E-value=1.5e-09 Score=87.91 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=76.6
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCC-CCCCeeEEEecccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 120 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpf-p~~sFD~I~~~~~l~~ 120 (458)
+|+|+|||+|.++..+++. ...+++++|.++.+++.+++. ..+..+...+...... ..++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999872 345999999999999888722 2356666666666543 5578999999987555
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEE
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
+......+++.+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3556678999999999999999986
No 97
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.05 E-value=1.7e-09 Score=108.98 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=77.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCC-CCCCCC----CeeEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSL----SFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~-Lpfp~~----sFD~I 112 (458)
+..+|||+|||+|..+..|++......+++++|+|++|++.|+++ +.++....+|... ++++.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 346899999999999999988742245899999999999988775 2345667788765 344433 23344
Q ss_pred Eeccccccccc-cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~-~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++...+.++.. +...+|+++.++|+|||.|++.....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 44445555543 23479999999999999999977544
No 98
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.04 E-value=6.1e-10 Score=101.98 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEcCCHHHHHHHHHcC--------CCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEE
Q 012709 73 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 73 ~gvD~S~~~i~~A~er~--------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~lii 144 (458)
+|+|+|++|++.|+++. .++.+..+|+.++|+++++||+|+++.+++++. ++.++|+|++|+|||||.+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEE
Confidence 48999999999997652 257899999999999999999999998876665 778899999999999999999
Q ss_pred EeCCC
Q 012709 145 TSPLT 149 (458)
Q Consensus 145 s~~~~ 149 (458)
.+...
T Consensus 80 ~d~~~ 84 (160)
T PLN02232 80 LDFNK 84 (160)
T ss_pred EECCC
Confidence 98643
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=2.3e-09 Score=109.32 Aligned_cols=102 Identities=21% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||.|||+|.++..++..+ ..++|+|+++.|++.|+++ +. .+.+..+|+.++|+++++||+|+++-.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 345689999999999988877654 3899999999999988766 33 357888899999988889999999632
Q ss_pred ccc---cc-----ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVD---WD-----QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~---~~-----~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. .. .....++.++.++|||||++++..+
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 110 01 1135799999999999999999876
No 100
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.02 E-value=4.3e-09 Score=96.95 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH----cCCC--eEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e----r~~~--~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.+...|++.+++ ..++|+|.|+.+++.|+. ++.+ +.+.++|+..-.+..+.||+|+--.
T Consensus 66 ~~A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 66 KQADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ccccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 33449999999999999999999874 349999999999987653 3554 8899999888778888999998533
Q ss_pred cccc--cc-----ccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVD--WD-----QKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~--~~-----~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+-. .. ..+..++..+.++|+|||.|++...+.
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 2111 11 112357889999999999999988643
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.99 E-value=7.6e-09 Score=103.47 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++++. +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999864 456899999999999999876 43 46777777643 3455689999997211
Q ss_pred cc----------cccc--------------HHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VD----------WDQK--------------DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~----------~~~~--------------~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. +..+ ...++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 0001 13578899999999999998664
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.98 E-value=2.5e-09 Score=100.14 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~~ 114 (458)
....+|||+|||+|.++..++++.....+++++|+++.+ ....+.+..+|..+.+ +++++||+|+|
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 345799999999999999998765445679999999865 2234566666765542 45678999998
Q ss_pred ccccc---cccc-------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~---~~~~-------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.. .|.. ....++.++.++|+|||++++...
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 64311 1111 125789999999999999999754
No 103
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.95 E-value=1e-08 Score=106.72 Aligned_cols=122 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCC-CCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~ 120 (458)
.+|||+|||+|.++..++... +..+++++|+|+.|++.|+++ +.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988753 456899999999999999876 45678888887544332 357999999753221
Q ss_pred cc--------------------cc----HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 121 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 121 ~~--------------------~~----~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
-. .+ ..+++.++.+.|+|||.+++..... .-+.+.+++.+.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~-------------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD-------------QGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc-------------HHHHHHHHHHHCCC
Confidence 10 00 1256667788999999988765311 12356666776777
Q ss_pred EEEEe
Q 012709 177 ELVSQ 181 (458)
Q Consensus 177 ~~v~~ 181 (458)
..+..
T Consensus 399 ~~v~v 403 (423)
T PRK14966 399 SGVET 403 (423)
T ss_pred cEEEE
Confidence 65543
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=1.2e-08 Score=99.45 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=90.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
.++|||+|||+|..+..++++. +..+++++|+.+.+.+.|+++ ..++.+...|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 6799999999999999999974 347999999999999999887 236788888877763 4445799999985
Q ss_pred ccccccc-----------------cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 117 CGVDWDQ-----------------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 117 ~l~~~~~-----------------~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
-.+.-.. +-+..++...++|||||++.++-++. ...++-.++.+..|...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-------------rl~ei~~~l~~~~~~~k 190 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-------------RLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-------------HHHHHHHHHHhcCCCce
Confidence 4333211 22457888999999999999997621 23345566666566544
Q ss_pred E
Q 012709 180 S 180 (458)
Q Consensus 180 ~ 180 (458)
.
T Consensus 191 ~ 191 (248)
T COG4123 191 R 191 (248)
T ss_pred E
Confidence 4
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=6.3e-09 Score=100.48 Aligned_cols=100 Identities=15% Similarity=-0.023 Sum_probs=84.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------------CCCeEEEeeccCCCCCC--
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------------GLPAMIGSFASKQLPYP-- 105 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------------~~~~~~~~~d~~~Lpfp-- 105 (458)
..+||+.|||.|....+|+++|+ +|+|+|+|+.+++.+.+. +..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 46999999999999999999987 899999999999987552 44678889998888642
Q ss_pred -CCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.||+|+=..++++++.+.. ++.+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 268999998888888876544 899999999999999888765
No 106
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=101.63 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=82.4
Q ss_pred CEEEEECCCCchhHHHHhhcCCcc--ceEEEEcCCHHHHHHHHHcCC------CeEEEeeccCCC--CCCCCCeeEEEec
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLT--MCIANYEASGSQVQLTLERGL------PAMIGSFASKQL--PYPSLSFDMLHCA 115 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~--~~v~gvD~S~~~i~~A~er~~------~~~~~~~d~~~L--pfp~~sFD~I~~~ 115 (458)
.+||+||||.|.....+++-. ++ ..+.+.|.|+.+++..+++.. .+.+.+++...+ |.+.+++|.|++.
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 389999999999998888753 34 789999999999999887722 233344433333 5677999999999
Q ss_pred ccccccccc-HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 116 RCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+++-.+..+ ...++.+++++|||||.+++-+.+.+
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 998777654 45899999999999999999987663
No 107
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=1.3e-08 Score=100.31 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
...+|||+|||+|.++..++... +..+++++|+|+.+++.|+++. .++.+...|... ++++++||+|+|+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCc
Confidence 44689999999999999998864 4568999999999999998762 256777777633 3345789999996332
Q ss_pred cccc-------------------------ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 119 VDWD-------------------------QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 119 ~~~~-------------------------~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.... .....++.++.++|+|||++++..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 2110 011357788889999999999954
No 108
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.1e-08 Score=97.56 Aligned_cols=95 Identities=19% Similarity=0.096 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||+|||+|.++..+++... +++++|+++.+++.|+++ +. ++.+..+|......+.++||+|++..+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 3457999999999999998887642 799999999999998876 33 467777775443223478999999765
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
..+ +..++.+.|+|||.+++...
T Consensus 154 ~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chh-------hhHHHHHhcCCCcEEEEEEc
Confidence 332 34567899999999999764
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.90 E-value=3.2e-08 Score=98.91 Aligned_cols=100 Identities=17% Similarity=0.116 Sum_probs=75.3
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc-
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG- 118 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l- 118 (458)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++.+||+|+|+--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999999864 456899999999999999876 33 37777777644 3455589999996211
Q ss_pred ------------cccc-----------ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 ------------VDWD-----------QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ------------~~~~-----------~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+-+ .....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 1110 0123678899999999999988764
No 110
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=2.2e-08 Score=101.19 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=75.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.+|||+|||+|.++..++... +..+++++|+|+.+++.|+++ +. ++.+..+|... ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 589999999999999998864 567899999999999999876 33 47777777543 23456899999973211
Q ss_pred -------------cccc-------c----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 -------------DWDQ-------K----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 -------------~~~~-------~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+. + ...+++++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1000 0 13678899999999999998653
No 111
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.89 E-value=1.2e-08 Score=96.07 Aligned_cols=98 Identities=20% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~ 117 (458)
...+|||+|||+|.++..+++.. +..+++++|+++.+++.|+++ +. ++.+..+|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 44699999999999999987643 456899999999999998775 32 46677666543 222223467665421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
......+++++.++|+|||++++..+
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 22446799999999999999999875
No 112
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.89 E-value=8.4e-09 Score=105.18 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------------CCeEEEeeccCCC----CC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQL----PY 104 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------~~~~~~~~d~~~L----pf 104 (458)
...+|||+|||.|.-..-+...++ ..++|+|++...|+.|++|. ..+.+..+|.... -+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 567999999998877777766654 38999999999999998884 3455666664322 13
Q ss_pred C--CCCeeEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeC
Q 012709 105 P--SLSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 105 p--~~sFD~I~~~~~l~~~~~~~~---~~L~ei~RvLkPGG~liis~~ 147 (458)
+ ...||+|-|-+++|+.....+ .+|+.+...|+|||+|+.+.+
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 3 359999999998777654443 689999999999999999997
No 113
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.88 E-value=9e-09 Score=98.02 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=95.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-----CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....++||.|||-|..+..++...+. +|..+|+.+..++.|++.- ....+.+...+++..+.++||+|.+-+|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 34679999999999999988765544 8999999999999999652 2245666667776544579999999999
Q ss_pred cccccccHH-HHHHHHHhcccCCcEEEEEeCCCCcccccccHHH---HHHHHHHHHHHHhhccEEEEeeec
Q 012709 118 GVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQQDE 184 (458)
Q Consensus 118 l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~---~~~w~~i~~l~~~~~w~~v~~~~~ 184 (458)
+.|.+++.- .+|+.+...|+|+|.+++-+.........-+.+. ...-+.+.++.++.+++++.++.+
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 999986433 8999999999999999998875533211112221 122467888999999999987653
No 114
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=4.6e-08 Score=97.78 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----------CCCeEEEeeccCCC-CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----------~~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
..+++||++|||.|..+..+++.. ...+|+++|+++.+++.|++. ..++.+...|+... ...+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 346799999999999999998752 235899999999999999875 23567777776542 334678999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++... .++... ...+++.+.+.|+|||.+++...
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998632 232211 14678999999999999998653
No 115
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.83 E-value=2.2e-08 Score=105.63 Aligned_cols=106 Identities=17% Similarity=0.262 Sum_probs=79.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
....+|||+|||+|..+.+++++. ...+++++|+++.+++.++++ +..+.+..+|+..++ ++.++||.|++.-
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 345799999999999999999865 236899999999999988766 556778888877654 3457899999432
Q ss_pred ----c--c-----cccccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 ----C--G-----VDWDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ----~--l-----~~~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. + ..|... ..++|.++.++|||||++++++...
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 0 011111 1268999999999999999998644
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=98.82 E-value=2.5e-08 Score=98.60 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=89.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
..+|||+|||+|.++..++.+. ...+++++|+++.|++.|+++..++.+...|+..+.. +++||+|+++-.+.+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3589999999999998887753 2358999999999999999886678888888877653 4689999998776664221
Q ss_pred -------------------HHHHHHHHHhcccCCcEEEEEeCCC-CcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 125 -------------------DGILLLEVDRVLKPGGYFVWTSPLT-NPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 125 -------------------~~~~L~ei~RvLkPGG~liis~~~~-~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
...++....++|+|+|.+.+.-... .++... .-++.+.+++..++....
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl-------~~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTM-------KSNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccC-------CHHHHHHHHHhcCcEecC
Confidence 1246677789999999877653221 111111 124556677777765543
No 117
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=9.7e-09 Score=97.69 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=90.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
.....++|||||.|....+|...++. +++-+|.|..|++.++.- ++.....++|.+.|+|.+++||+|+++.. .
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-l 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-L 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-h
Confidence 34458999999999999999998864 899999999999998765 45667788899999999999999999965 8
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
||.++....+.++...|||.|.|+-+....
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHHhcc
Confidence 999887789999999999999999886544
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.81 E-value=1.9e-08 Score=97.76 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=84.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+.++|+|||+|.|.++..++++. |..+++..|. +..++.+++ ..++.+..+|.. -++|. +|+++..+++++|.
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcc
Confidence 345799999999999999999865 7889999999 888888888 678999999987 67775 99999999999998
Q ss_pred ccHH-HHHHHHHhcccCC--cEEEEEeCCC
Q 012709 123 QKDG-ILLLEVDRVLKPG--GYFVWTSPLT 149 (458)
Q Consensus 123 ~~~~-~~L~ei~RvLkPG--G~liis~~~~ 149 (458)
++.. .+|+++++.|+|| |++++.+...
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 6543 8999999999999 9999999754
No 119
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.80 E-value=4.4e-08 Score=92.69 Aligned_cols=113 Identities=17% Similarity=0.220 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
....|.|+|||.+.++..+.. ++ .|...|.... +-.+...|+..+|+++++.|++++... -+-.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~-~~---~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLS--LMGT 135 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN-KH---KVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLS--LMGT 135 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CCEEEEECCCchHHHHHhccc-Cc---eEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhh--hhCC
Confidence 346899999999999977653 22 6888888642 234677899999999999999998643 3445
Q ss_pred cHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 124 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
+-..++.|+.|+|||||.|.+++..... ...+...+..+++||+...+.
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecc
Confidence 6678999999999999999999862211 123456677889999998865
No 120
>PRK04457 spermidine synthase; Provisional
Probab=98.79 E-value=3.7e-08 Score=97.44 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeeccCCC-CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQL-PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~~~L-pfp~~sFD~I~~~ 115 (458)
..+++|||||||.|.++.++++.. +..+++++|+++++++.|+++ ..++.+..+|+... .-..++||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 345799999999999999998754 677999999999999999986 13567777775432 2223689999975
Q ss_pred ccccc--ccc--cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVD--WDQ--KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~--~~~--~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. +.. .+. ....+++++.++|+|||.+++...
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 2 111 111 125799999999999999999643
No 121
>PRK01581 speE spermidine synthase; Validated
Probab=98.79 E-value=1e-07 Score=97.75 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCC-CCCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~-Lpfp~~sF 109 (458)
..+++||++|||+|...+.+++.. +..+|+.+|+++++++.|++. ..++.+...|+.. +.-.+++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 456799999999999999988753 346899999999999999962 3467777777655 33345789
Q ss_pred eEEEeccccccccc-----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQ-----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~-----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|++... -+... ....+++.+.+.|+|||.+++...
T Consensus 228 DVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998731 21110 113689999999999999988754
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.79 E-value=6.5e-08 Score=102.09 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEE--EeeccCCCCC--CCCCeeEEEe-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~--~~~d~~~Lpf--p~~sFD~I~~- 114 (458)
...+|||+|||+|..+.++++.. +..+++++|+++.+++.++++ +..+.+ ..+|....++ +.++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 45799999999999999998764 256899999999999988766 554433 5555544443 5678999995
Q ss_pred ---cc--ccccccc-----c----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ---AR--CGVDWDQ-----K----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ---~~--~l~~~~~-----~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+. ++.+.++ . ..++|.++.++|||||++++++...
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 21 2221111 1 2468999999999999999998755
No 123
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.79 E-value=3.8e-08 Score=93.25 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=67.9
Q ss_pred CCCEEEEECCCCc----hhHHHHhh--cCC--ccceEEEEcCCHHHHHHHHHc--------C------------------
Q 012709 44 GVRTILDIGCGYG----SFGAHLFS--KEL--LTMCIANYEASGSQVQLTLER--------G------------------ 89 (458)
Q Consensus 44 ~~~~VLDVGCG~G----~~~~~La~--~~~--~~~~v~gvD~S~~~i~~A~er--------~------------------ 89 (458)
..-+|+..||++| +++..|.. ... ...+|.|+|+|+.+++.|++= +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 45555544 111 147999999999999999762 0
Q ss_pred -------CCeEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 90 -------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 90 -------~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
..+.|...+..+.+.+.+.||+|+|.++++.+..... ++++.+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1355666666663344578999999999999886543 899999999999999999753
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=5e-08 Score=103.50 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEe----
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHC---- 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~---- 114 (458)
...+|||+|||+|..+.++++......+++++|+|+.+++.++++ +. ++.+...|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 447999999999999988876432335899999999999988766 44 4677788877765 5578999995
Q ss_pred ccccc-------ccccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGV-------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~-------~~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+..-. .|... ...+|.++.++|||||++++++...
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22110 11111 2358999999999999999998755
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.76 E-value=3.2e-08 Score=94.72 Aligned_cols=98 Identities=17% Similarity=0.085 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+..+|||||||+|++++.|+....+...|+++|..+..++.|+++ +. ++.+..+|...---+...||.|++...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEEeec
Confidence 3457999999999999999988644455799999999999999877 44 678888886543223467999999865
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
... .|. .+.+.||+||++++-..
T Consensus 151 ~~~---ip~----~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 151 VPE---IPE----ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp BSS-----H----HHHHTEEEEEEEEEEES
T ss_pred cch---HHH----HHHHhcCCCcEEEEEEc
Confidence 432 223 46667899999999664
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=9.9e-08 Score=100.94 Aligned_cols=107 Identities=22% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC----CCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp----fp~~sFD~I~ 113 (458)
....+|||+|||+|..+.++++......+|+++|+++.+++.++++ |. ++.+..+|+..++ +..++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3457999999999999999987633345899999999999888765 44 5678888887765 4467899999
Q ss_pred ec----c--ccccccc-----c----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CA----R--CGVDWDQ-----K----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~----~--~l~~~~~-----~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+. . ++.+.++ . ..++|.++.++|||||++++++...
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 62 1 2111110 0 2468999999999999999998644
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.75 E-value=3.8e-08 Score=90.60 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+..+|||+|||+|.++..+++++ .+++++|+++.+++.++++. .++.+..+|+..+++++.+||.|+++-- ++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~ 88 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YN 88 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-cc
Confidence 34689999999999999999874 38999999999999998873 3678889999998888778999998743 44
Q ss_pred ccccHHHHHHHHHhc--ccCCcEEEEEe
Q 012709 121 WDQKDGILLLEVDRV--LKPGGYFVWTS 146 (458)
Q Consensus 121 ~~~~~~~~L~ei~Rv--LkPGG~liis~ 146 (458)
.. ...+..+.+. +.++|.+++..
T Consensus 89 ~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 89 IS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 32 2234443332 45788887764
No 128
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.75 E-value=4.6e-08 Score=96.80 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEec--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCA-- 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~-- 115 (458)
....+|||+|||+|..+..+++.......|+++|+++.+++.++++ +. ++.+...|...++...++||.|++.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3456999999999999999887533335899999999999888765 43 4677777777666555679999962
Q ss_pred --c--ccc-------cccc--------cHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 116 --R--CGV-------DWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 116 --~--~l~-------~~~~--------~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ++. .+.. ...++|.++.++|||||++++++...
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1 110 0110 11258999999999999999998644
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=4.8e-08 Score=99.26 Aligned_cols=97 Identities=14% Similarity=0.032 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+..+|||+|||+|.++..+++.......|+++|+++.+++.|+++ +. ++.+..+|....+...++||+|++....
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~ 159 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV 159 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence 446999999999999999987643234699999999999988774 33 4677777766555445689999987542
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ ....+.+.|+|||.+++...
T Consensus 160 ~~-------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 DE-------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred HH-------hHHHHHHhcCCCCEEEEEeC
Confidence 22 23356789999999988653
No 130
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.74 E-value=2.9e-08 Score=98.71 Aligned_cols=104 Identities=22% Similarity=0.268 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------CCCeEEEeeccC------CCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------GLPAMIGSFASK------QLPYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~~~~~~~~~d~~------~Lpfp~ 106 (458)
..+.++|+|||.|.-...+-+.++. .++|+|+.+..|+.|++| -.++.|..+|.. .+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4568999999999877777776764 899999999999999887 125778877743 356676
Q ss_pred CCeeEEEeccccccccccH---HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 107 LSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 107 ~sFD~I~~~~~l~~~~~~~---~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.+||+|-|-+|+|.--... ..+|+++.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 7799999999855533222 378999999999999999998743
No 131
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.74 E-value=1.2e-07 Score=93.17 Aligned_cols=102 Identities=17% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCC-CC-CCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQL-PY-PSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~L-pf-p~~sFD~I~~~~~l~~ 120 (458)
..+|||+|||+|.++..+++.. +..+++++|+|+.+++.|+++- ....+..+|.... +- ..++||+|+++--...
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3589999999999999998753 3458999999999999998762 1246666665432 21 1357999999743221
Q ss_pred cc---------------------cc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 WD---------------------QK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 ~~---------------------~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. .+ ...++..+.++|+|||++++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 10 01 12567778899999999998764
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=6.6e-08 Score=102.16 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
.++.+|||+|||+|..+.+++.......+|+++|+|+.+++.++++ +. ++.+...|+..++ +.+++||.|++.-
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3456999999999999999887633346899999999999988766 44 3677788877765 4567899999621
Q ss_pred -c--ccccccc------------------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 -C--GVDWDQK------------------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 -~--l~~~~~~------------------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
| +-.+..+ ..++|.++.+.|||||++++++...
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1111111 1357889999999999999998754
No 133
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.71 E-value=1.1e-07 Score=91.55 Aligned_cols=132 Identities=17% Similarity=0.096 Sum_probs=89.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH-cCC----------------CeEEEeeccCCCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGL----------------PAMIGSFASKQLPYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e-r~~----------------~~~~~~~d~~~Lpfp~ 106 (458)
...+||..|||.|.-..+|+++|+ +|+|+|+|+.+++.+.+ ++. .+.+.++|.-.++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 345899999999999999999986 89999999999998843 322 3456778877765433
Q ss_pred -CCeeEEEeccccccccccH-HHHHHHHHhcccCCcEEEEE--eCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 107 -LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT--SPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 107 -~sFD~I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis--~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
++||+|+=..+++-++.+. .++.+.+.++|+|||.+++. ........ . +...-.-++++++.. ..|++..-+
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~-G--PPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME-G--PPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS-S--SS----HHHHHHHHT-TTEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC-C--cCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5799999877777776554 48999999999999994333 32221111 1 111122356777777 677666543
No 134
>PLN02366 spermidine synthase
Probab=98.70 E-value=3.7e-07 Score=92.37 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
..+++||+||||.|.....+++. ....+++.+|+++.+++.|++. ..++.+..+|+... ..++++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999999999875 2346899999999999999885 23577777775432 123578999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|++-.. .++... ...+++.+.+.|+|||.++....
T Consensus 169 Ii~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 169 IIVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 998532 322211 13689999999999999987543
No 135
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.8e-07 Score=90.82 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+.+|||.|.|+|.++.+|+..-.+..+++.+|+.++..+.|+++ + .++.+...|..+.-+++ .||+|+.
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav~L-- 169 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAVFL-- 169 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEEEE--
Confidence 3457999999999999999997655678999999999999999988 2 23677777877766664 8999984
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.++ +|-.++..+..+|+|||.+++..|..
T Consensus 170 ---Dmp-~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 170 ---DLP-DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ---cCC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 334 66789999999999999999998854
No 136
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.70 E-value=1.6e-07 Score=88.86 Aligned_cols=99 Identities=28% Similarity=0.426 Sum_probs=75.1
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CC--CCCCCeeEEEecccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LP--YPSLSFDMLHCARCG 118 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lp--fp~~sFD~I~~~~~l 118 (458)
.+||||||.|.+...++... |...++|+|++...+..|.++ ++ ++.+..+|+.. ++ ++++++|.|+..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 89999999999999999975 788999999999988776554 43 78888888776 22 56799999998765
Q ss_pred ccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
-+|+... ..+|.++.++|+|||.+.+.+-
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 5554321 3699999999999999999873
No 137
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.69 E-value=4.4e-07 Score=86.05 Aligned_cols=132 Identities=19% Similarity=0.271 Sum_probs=87.1
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHH----HHcCCC-e-EEEeeccCCC--CC------CCCCeeEE
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-A-MIGSFASKQL--PY------PSLSFDML 112 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A----~er~~~-~-~~~~~d~~~L--pf------p~~sFD~I 112 (458)
+|||||||||..+.++++. .|.....+.|..+..+.-. .+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999985 5788899999998875322 222221 1 0112233222 22 35689999
Q ss_pred Eecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCcccccccH--HH-------------HHHHHHHHHHHHhhc
Q 012709 113 HCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--EN-------------QKRWNFVRDFVENLC 175 (458)
Q Consensus 113 ~~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~--e~-------------~~~w~~i~~l~~~~~ 175 (458)
+|.++ +|+..- -+.+|+.+.++|+|||.|++.+|-... +..+.+ +. ....+.+.+++.+.+
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~-G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRD-GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccC-CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99987 555432 247999999999999999999985522 111111 01 111267888888888
Q ss_pred cEEEEe
Q 012709 176 WELVSQ 181 (458)
Q Consensus 176 w~~v~~ 181 (458)
+.+...
T Consensus 185 L~l~~~ 190 (204)
T PF06080_consen 185 LELEED 190 (204)
T ss_pred CccCcc
Confidence 876654
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.69 E-value=6e-07 Score=83.70 Aligned_cols=98 Identities=19% Similarity=0.097 Sum_probs=77.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
....+++|||||+|+.+..++. ..+..+++++|-++++++..+++ + .++.+..+++-.. +-. .+||.|+...
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGG 110 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGG 110 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECC
Confidence 4456999999999999999994 45788999999999999877665 3 3667777765443 211 2799999876
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. - ....+|+.+...|||||++++..-
T Consensus 111 g-~----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 111 G-G----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred C-C----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 4 2 445689999999999999999764
No 139
>PHA03412 putative methyltransferase; Provisional
Probab=98.68 E-value=1.1e-07 Score=92.13 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=73.2
Q ss_pred CCEEEEECCCCchhHHHHhhcC--CccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~--~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
..+|||+|||+|.++..++++. .+..+|+++|+++.+++.|+++...+.+...|....++ +++||+|+|+--+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 4599999999999999887642 12458999999999999999887778888888876655 46899999985544221
Q ss_pred c-c----------HHHHHHHHHhcccCCcE
Q 012709 123 Q-K----------DGILLLEVDRVLKPGGY 141 (458)
Q Consensus 123 ~-~----------~~~~L~ei~RvLkPGG~ 141 (458)
. + ...++..+.++++||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 0 0 23578888887777775
No 140
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.67 E-value=1.6e-07 Score=90.91 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=83.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.....|.|+|||.+.++. +.. ..|...|+.. ++-.+...|+.++|+++++.|++++. +--+-
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~---~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~C--LSLMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SER---HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFC--LSLMG 240 (325)
T ss_pred cCceEEEecccchhhhhh---ccc---cceeeeeeec----------CCCceeeccccCCcCccCcccEEEee--Hhhhc
Confidence 445689999999998775 222 2677888753 34557778899999999999999974 44455
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.+...+++|++|+|+|||.+++++.-..+ ..-..+...+..++|.......
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv~SRf----------~dv~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEVKSRF----------SDVKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEehhhhc----------ccHHHHHHHHHHcCCeeeehhh
Confidence 67778999999999999999999863211 1123356677888998877553
No 141
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.5e-07 Score=87.84 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCC-CCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPS-LSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~-~sFD~I~~~~ 116 (458)
....+|||||||+|+.++.|++... +|+.+|..+...+.|+++ +. ++.+..+|...- ++. ..||.|+.+.
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~~~~aPyD~I~Vta 146 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-WPEEAPYDRIIVTA 146 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-CCCCCCcCEEEEee
Confidence 4557999999999999999998753 899999999999999886 44 677777775432 333 7899999886
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.-..+ . .+.+-|||||++++-.-
T Consensus 147 aa~~vP---~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 147 AAPEVP---E----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ccCCCC---H----HHHHhcccCCEEEEEEc
Confidence 644433 3 34556899999999664
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=4.8e-07 Score=89.81 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCC-CCCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~-Lpfp~~sFD~I 112 (458)
..+++||+||||+|.++..+++.. +..+++++|+++++++.|++.- .++.+...|... +....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999999988764 3458999999999999998751 234555555432 12224789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++... .+.... ...+++.+.+.|+|||.+++...
T Consensus 150 i~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 98643 222211 24688999999999999999743
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.64 E-value=9.9e-08 Score=101.20 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC--CCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp--fp~~sFD~I~~~~ 116 (458)
+..+|||+|||+|..+..+++...+..+++++|+++.+++.++++ +. ++.+..+|+..++ ++ ++||+|++..
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 446899999999999999987632356899999999999988765 43 4677778876653 34 7899999742
Q ss_pred c------ccc-----cccc----------HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 C------GVD-----WDQK----------DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~------l~~-----~~~~----------~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
- +-+ |... ...+|.++.++|||||.+++++...
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1 000 1111 1257999999999999999887533
No 144
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4e-07 Score=90.93 Aligned_cols=113 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
+|||+|||+|..+..++... +..+|+++|+|+.+++.|+++ ++ ++.+...|.. -+.. ++||+|+||--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf-~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF-EPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc-cccC-CceeEEEeCCCCCCC
Confidence 79999999999999999865 568999999999999999877 43 2233333211 1233 489999998432222
Q ss_pred c----------ccH--------------HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhc
Q 012709 122 D----------QKD--------------GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC 175 (458)
Q Consensus 122 ~----------~~~--------------~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~ 175 (458)
. .+| .+++.++.+.|+|||.+++..-.. .-+.+.++....+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-------------q~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-------------QGEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-------------cHHHHHHHHHhcC
Confidence 1 011 257788999999999999876311 1234566666667
No 145
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.61 E-value=1.3e-07 Score=91.42 Aligned_cols=100 Identities=25% Similarity=0.292 Sum_probs=81.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCC-CeEEEeeccCCC---CCCCCCeeEEEeccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQL---PYPSLSFDMLHCARC 117 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~-~~~~~~~d~~~L---pfp~~sFD~I~~~~~ 117 (458)
..+||||||.|.+...+|+++ |...++|+|+...-+..|. +.++ ++.+...|+..+ -+++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 489999999999999999976 6789999999988776654 4488 899998887654 245569999998876
Q ss_pred cccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
-+|+... ..+++.+.++|+|||.+.+.+-
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 6676432 2689999999999999999873
No 146
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=7.7e-07 Score=96.27 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCCC-CCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQL-PYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~L-pfp~~sF 109 (458)
+.+++|||+|||+|..+..+++.. ...+++.+|+++++++.|+++ ..++.+...|.... ...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 345799999999999999998752 225999999999999999983 13567777776552 2334789
Q ss_pred eEEEecccccccccc-----HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 110 DMLHCARCGVDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 110 D~I~~~~~l~~~~~~-----~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
|+|++... .+.... ..++++.+.+.|||||.+++....+.. . .+...++.+..++.++
T Consensus 375 DvIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~----~----~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 375 DVIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYF----A----PKAFWSIEATLEAAGL 437 (521)
T ss_pred CEEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCccc----c----hHHHHHHHHHHHHcCC
Confidence 99998743 222111 135889999999999999987643211 1 1223345555666666
No 147
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.59 E-value=2.7e-07 Score=89.74 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-----CCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-----fp~~sFD 110 (458)
.++++|||+|||+|..+..++..-....+++++|+++.+++.|+++ +. .+.+..+++... + .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3467999999999998888876433456999999999999999876 33 467777776442 1 1246899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+|++-.. ......++.++.++|||||.+++-.
T Consensus 147 ~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9987521 2233468999999999999988754
No 148
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.56 E-value=5.9e-07 Score=89.89 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCEEEEECCCCc----hhHHHHhhcC---CccceEEEEcCCHHHHHHHHHc--------CC-------------------
Q 012709 45 VRTILDIGCGYG----SFGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL------------------- 90 (458)
Q Consensus 45 ~~~VLDVGCG~G----~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er--------~~------------------- 90 (458)
.-+|+..||++| +++..|.+.. ....+|+|+|+|+.+++.|++- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 4555554421 1146899999999999998763 00
Q ss_pred ---------CeEEEeeccCCCCCC-CCCeeEEEecccccccccc-HHHHHHHHHhcccCCcEEEEEe
Q 012709 91 ---------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 91 ---------~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~~~-~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+.|...+....+++ .+.||+|+|.++++++... ..+++..+.+.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 123444555444443 5789999999999998654 3489999999999999988865
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.50 E-value=2.1e-06 Score=83.26 Aligned_cols=126 Identities=16% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeE-EEeeccCCC-----CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~-~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
....+|||+|||+|.++..+++++. .+++++|++++|+....+...++. +...+...+ +..-..||+++++.
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~ 151 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISL 151 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeeh
Confidence 3456999999999999999999864 489999999988876554444432 232233322 11113678777664
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC-C-------cccccccH-HHHHHHHHHHHHHHhhccEEEE
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT-N-------PQAFLRNK-ENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~-~-------~~~~~~~~-e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+ ..|..+.+.|+| |.+++-..+. . ..+-..+. .+.+..+++...+.+.+|....
T Consensus 152 ~---------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 152 I---------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred H---------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 3 147789999999 7776654322 1 01112222 2233355666666777776554
No 150
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.50 E-value=1.9e-06 Score=84.42 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC---CCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP---SLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp---~~sFD~I~ 113 (458)
.++.+|||.|.|+|+++.+|++.-.+..+|...|.+++..+.|+++ +. ++.+...|.....|+ ++.||.|+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Davf 118 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVF 118 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEE
Confidence 4557999999999999999998766778999999999999999887 33 578888887655453 36799987
Q ss_pred eccccccccccHHHHHHHHHhcc-cCCcEEEEEeCCC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvL-kPGG~liis~~~~ 149 (458)
. .++ +|-.++..+.++| ||||++++..|+.
T Consensus 119 L-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 119 L-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp E-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred E-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 4 334 5566899999999 9999999999854
No 151
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.47 E-value=1.7e-06 Score=78.98 Aligned_cols=106 Identities=16% Similarity=0.049 Sum_probs=90.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC-----CCCCCeeEEEeccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARC 117 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp-----fp~~sFD~I~~~~~ 117 (458)
.++.-|||+|.|||.++..+++++++..+++++|.|++.+....++...+.+..+|+..+. +.+..||.|+|.--
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3446899999999999999999999999999999999999999988777778888876654 56678999999877
Q ss_pred cccccccHH-HHHHHHHhcccCCcEEEEEeCC
Q 012709 118 GVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 118 l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~ 148 (458)
+..++.... ++|+++...|++||.++-....
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 777765443 7899999999999999987754
No 152
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.46 E-value=4.5e-08 Score=79.58 Aligned_cols=91 Identities=25% Similarity=0.341 Sum_probs=58.1
Q ss_pred eeccccchhhhhhhhcc-CCCeEEEEeecCCCCCCchhhhcccccc---ccccccccCCCCCCccccccccccccccccC
Q 012709 311 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 311 ~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~~~l~~~~~rgl~g---~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
||+|||.|-+++.|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.++.-+.+||++++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 79999999999999955 33344443332 2333333322111 2221123344445899999999998865
Q ss_pred CCCCCcchhhhhhcccccCCceEEE
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
.+...++-|+-|+|||||+++|
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 4567899999999999999986
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.45 E-value=2e-06 Score=91.28 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..+++.+ .+++|+|+|+.|++.|+++ +. ++.+..+|+.. +++++++||+|++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 34699999999999999999875 3899999999999998876 33 57788888653 3455678999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-- ... ....+..+.+ ++|++.++++..
T Consensus 374 dPP---r~g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 374 DPP---RAG-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CcC---CcC-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 633 221 2345555555 699999999875
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.45 E-value=1.4e-06 Score=91.12 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=72.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCCC--C--CCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~Lp--f--p~~sFD~I~ 113 (458)
.++|||+|||+|.++..++..+ ..+++++|+|+.+++.|+++ ++ ++.+..+|+...- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4699999999999998876654 34899999999999998876 43 4677777765431 1 346899999
Q ss_pred eccccccccc--------cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~--------~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.--.+.-.. .-..++..+.++|+|||.++....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8743221110 112455567899999999998764
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.45 E-value=8.7e-07 Score=85.28 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC---CeEEEe------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGS------------------------ 96 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~---~~~~~~------------------------ 96 (458)
.+..+|||||-.|.++..+++.. ....+.|+|+.+..|+.|+++.. ..+..+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45689999999999999999863 45579999999999999998711 000000
Q ss_pred -----------------eccC-CCCCCCCCeeEEEecc----ccccccccH-HHHHHHHHhcccCCcEEEEE
Q 012709 97 -----------------FASK-QLPYPSLSFDMLHCAR----CGVDWDQKD-GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 97 -----------------~d~~-~Lpfp~~sFD~I~~~~----~l~~~~~~~-~~~L~ei~RvLkPGG~liis 145 (458)
.+.. -+.+....||+|+|.. +-++|.++. .++|+.+.++|.|||+|++-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 1122346799999963 334455432 38999999999999999984
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.41 E-value=1e-06 Score=98.48 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-CCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-pfp~~sFD~I~~~~ 116 (458)
.++|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++ +. ++.+..+|.... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46999999999999999998754 3799999999999999876 33 467777775432 11146899999863
Q ss_pred cccc----------ccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVD----------WDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~----------~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.+. ...+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 111223578889999999999988764
No 157
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.41 E-value=2.5e-06 Score=84.49 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCc----hhHHHHhhcCC----ccceEEEEcCCHHHHHHHHHc---------CC----------------
Q 012709 44 GVRTILDIGCGYG----SFGAHLFSKEL----LTMCIANYEASGSQVQLTLER---------GL---------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G----~~~~~La~~~~----~~~~v~gvD~S~~~i~~A~er---------~~---------------- 90 (458)
+.-+|+-.||++| +++..|.+... ...+|+|+|++...++.|+.= ++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4569999999999 55555555432 257899999999999988642 11
Q ss_pred ---------CeEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeC
Q 012709 91 ---------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 91 ---------~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~ 147 (458)
.+.|...+...-++..+.||+|+|-+|++.+....+ +++..++..|+|||+|++...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 122333333333323467999999999999886544 899999999999999999653
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.40 E-value=3e-06 Score=85.95 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCC-CCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpf-p~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..+++.+. +++|+|+++.+++.|+++ ++ ++.+..+|+..+.. ..++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC-
Confidence 46899999999999999998653 899999999999998765 44 57888888766532 3357999998732
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...-.. .+.++..-++|++.++++..+.
T Consensus 250 --r~G~~~-~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 250 --RRGIGK-ELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred --CCCccH-HHHHHHHHcCCCeEEEEECCcc
Confidence 111112 2334444478888888777533
No 159
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.38 E-value=3.9e-06 Score=70.63 Aligned_cols=99 Identities=27% Similarity=0.337 Sum_probs=72.7
Q ss_pred EEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC--C---eEEEeeccCC--CCCCC-CCeeEEEeccccc
Q 012709 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 119 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~--~---~~~~~~d~~~--Lpfp~-~sFD~I~~~~~l~ 119 (458)
++|+|||+|... .+.........++++|+++.++..+..... . +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999865 333322111378889999999988655431 1 4566666655 78887 489999 666666
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6654 6789999999999999999998754
No 160
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.36 E-value=7e-06 Score=81.32 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHc---CC---------------------------
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER---GL--------------------------- 90 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er---~~--------------------------- 90 (458)
...+||==|||.|.++..++.+|+ .+.|.|.|--|+- +.... ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 446899999999999999999987 8999999998863 22221 00
Q ss_pred ------------CeEEEeeccCCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 012709 91 ------------PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 155 (458)
Q Consensus 91 ------------~~~~~~~d~~~Lpfp~---~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~ 155 (458)
+.....+|...+..++ ++||+|++.+ ++.-..+.-.+|..+.++|||||+++=.+|...+....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 1112233333332233 6899999875 45555566689999999999999999888876443221
Q ss_pred --ccH-HHHHHHHHHHHHHHhhccEEEEeee
Q 012709 156 --RNK-ENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 156 --~~~-e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
.+. .....++++..+.+..+|+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 111 1334489999999999999987654
No 161
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.36 E-value=2.8e-07 Score=86.67 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=87.8
Q ss_pred eccccccCc-cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 10 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 10 ~F~~~~~~f-d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
-|-|.+++| -..+++. +.+.... -.....+.++||+|+|.|..+..++... .+|.+++.|..|....+++
T Consensus 83 G~lgrGsMFifSe~QF~----klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFR----KLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccccCceEEecHHHHH----HHHhcCC--CccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc
Confidence 466667777 3434433 3332211 1123345799999999999999988642 3789999999999999888
Q ss_pred CCCeEEEeeccCCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccC-CcEEEEEeCCC
Q 012709 89 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLT 149 (458)
Q Consensus 89 ~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkP-GG~liis~~~~ 149 (458)
+.++.-.. ...--+-+||+|.|..+ +.-..++.++|+.+..+|+| +|+.+++-..+
T Consensus 154 ~ynVl~~~----ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 154 NYNVLTEI----EWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred CCceeeeh----hhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 76553321 11112345999999874 66677888999999999999 89988875433
No 162
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.34 E-value=6.6e-06 Score=78.21 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=69.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC-CCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++.++. .+++++|.++.+++.|+++ +. ++.+...|... ++...++||+|++.--+
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 35899999999999987666553 4899999999999988775 33 56777777644 22234579999988542
Q ss_pred ccccccHHHHHHHHHh--cccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~R--vLkPGG~liis~~ 147 (458)
. ..-...++..+.. +|+|+|.+++...
T Consensus 132 ~--~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 R--KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 1122345555544 4799998888764
No 163
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.33 E-value=1e-05 Score=85.42 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC----CCCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~----Lpfp~~sFD~I~~ 114 (458)
+..+|||+|||+|.++..+++... +++++|+++.+++.|+++ +. ++.+..+|+.. +++.+++||+|++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 346899999999999999998643 899999999999999876 33 67788888654 2344567999997
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-.. ..-...+++.+.+ ++|++.++++..
T Consensus 369 dPPr---~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 369 DPPR---KGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred CcCC---CCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 5331 1112456666554 889988777753
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.31 E-value=9.9e-06 Score=82.35 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=65.1
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---C--C--CeE
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--L--PAM 93 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~--~--~~~ 93 (458)
...|++.+++.+..........+...++||||||+|.....|+.+. ...+++|+|+++.+++.|+++ + . .+.
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 4677777777765421111122345789999999998888887653 356999999999999999876 2 2 233
Q ss_pred EEe-eccCCC----CCCCCCeeEEEecccccc
Q 012709 94 IGS-FASKQL----PYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 94 ~~~-~d~~~L----pfp~~sFD~I~~~~~l~~ 120 (458)
+.. .+...+ ..+.+.||+|+|+--++.
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 332 222221 124578999999966444
No 165
>PLN02672 methionine S-methyltransferase
Probab=98.31 E-value=4.1e-06 Score=96.55 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------------------CCeEEEeeccCCCC
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------------LPAMIGSFASKQLP 103 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------------------~~~~~~~~d~~~Lp 103 (458)
..+|||+|||+|..+..++.+. +..+++++|+|+.+++.|+++. .++.+..+|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999999864 4568999999999999997661 1367777776543
Q ss_pred CCC--CCeeEEEeccccccc----------------------------c-----ccH----HHHHHHHHhcccCCcEEEE
Q 012709 104 YPS--LSFDMLHCARCGVDW----------------------------D-----QKD----GILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 104 fp~--~sFD~I~~~~~l~~~----------------------------~-----~~~----~~~L~ei~RvLkPGG~lii 144 (458)
+++ ..||+|+|+--.+.- . .+. .+++.++.++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 369999997321110 0 111 3677888899999999998
Q ss_pred EeC
Q 012709 145 TSP 147 (458)
Q Consensus 145 s~~ 147 (458)
-.-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 653
No 166
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.28 E-value=2.8e-06 Score=81.15 Aligned_cols=100 Identities=17% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC-C-----CCCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L-p-----fp~~sFD~ 111 (458)
.+++||||||++|.-+.++++.-.+..+++.+|.++...+.|++. +. ++.+..+++... + .+.+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 457999999999999999997543467999999999999999765 33 677887775431 1 22368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.-. ...+-..++..+.++|+|||.+++-..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 99643 233445789999999999999988654
No 167
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.28 E-value=2.8e-06 Score=84.43 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=58.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC--CCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
...+|||||||+|.++..+++++. +++++|+++.|++.++++. .++.+..+|+..+++++-.+|.|+++-
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEeC
Confidence 346899999999999999999863 8999999999999998763 478888999888877643368888873
No 168
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.25 E-value=4.1e-06 Score=77.72 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C----CCeEEEeeccCC-C--C-CCCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQ-L--P-YPSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~----~~~~~~~~d~~~-L--p-fp~~sFD 110 (458)
....+|||+|||+|..+..++... ...+|+.+|.++ .++.++.+ + .++.+...+-.. . . ...++||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 455799999999999999998872 345899999988 76665544 2 234444443222 1 1 2346899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+++.|++. ......+++-+.++|+|+|.++++.+
T Consensus 122 ~IlasDv~Y~-~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYD-EELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccch-HHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999665 44556789999999999999888775
No 169
>PLN02476 O-methyltransferase
Probab=98.25 E-value=4.9e-06 Score=82.85 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC-C----CCCCee
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y----PSLSFD 110 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp-f----p~~sFD 110 (458)
.++++|||||+|+|..+.+++..-.+...++.+|.++...+.|+++ |. .+.+..+++.. |+ + ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3568999999999999999987422355799999999999999776 44 56777776533 22 1 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+|+.-. ....-..++..+.++|+|||.+++-.
T Consensus 197 ~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 197 FAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 999642 23334578999999999999988744
No 170
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=6e-06 Score=81.42 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++++. +++++|+++.+++.++++. .++.+..+|+..++++ .||.|+++-.
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcCC
Confidence 346899999999999999998753 8999999999999998762 3578888898887765 4899999854
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.23 E-value=4.7e-06 Score=80.11 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEe-eccCCC-C-CCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGS-FASKQL-P-YPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~-~d~~~L-p-fp~~sFD~I~ 113 (458)
.++++|||||.+.|.-+..++..-....+++.+|.++++.+.|+++ |. .+.+.. +|+.+. . ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 4678999999999999999987432267899999999999999987 33 344444 343221 1 4568999999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.- +...+-..+|..+.++|+|||.+++-.-
T Consensus 138 ID----adK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 ID----ADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred Ee----CChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 53 3344445799999999999999988553
No 172
>PRK04148 hypothetical protein; Provisional
Probab=98.23 E-value=7.7e-06 Score=72.74 Aligned_cols=91 Identities=12% Similarity=0.094 Sum_probs=62.4
Q ss_pred CCEEEEECCCCch-hHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G~-~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~ 122 (458)
..+|||||||+|. ++..|++.|. +|+++|+++..++.|++++.++ ...|..+.++. -+.+|+|.+.+. +
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~--v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNA--FVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeE--EECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4689999999995 8889998776 9999999999999999887544 44444433322 256999998865 2
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+....+.++.+-+ |.-+++..
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEc
Confidence 22234455554433 34455543
No 173
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.20 E-value=1.3e-05 Score=83.20 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=70.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l 118 (458)
..+|||+|||+|.++..++.++. +++++|+++.+++.|+++ +. ++.+..+|+.... -..++||+|++.--
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP- 309 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP- 309 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-
Confidence 35899999999999999997653 899999999999988876 33 5778888875532 11246999998743
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...-...++..+. .++|++.++++..
T Consensus 310 --r~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 310 --RRGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2222234555554 4799998888874
No 174
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.19 E-value=3.6e-05 Score=75.51 Aligned_cols=120 Identities=20% Similarity=0.275 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG 95 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~ 95 (458)
+.+.+.+.+.+..... .....+||+|||+|..+..++. +.+.+.++++|.|+.++..|.++ .+ .+.+.
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~-~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLH-GLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHh-cCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555555555543211 1123799999999999999987 45688999999999999998877 22 22333
Q ss_pred eec-----cCCCCCCCCCeeEEEeccccccccccH-------------------------HHHHHHHHhcccCCcEEEEE
Q 012709 96 SFA-----SKQLPYPSLSFDMLHCARCGVDWDQKD-------------------------GILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 96 ~~d-----~~~Lpfp~~sFD~I~~~~~l~~~~~~~-------------------------~~~L~ei~RvLkPGG~liis 145 (458)
..+ ....+...+.+|+++|+--.+.-.+.+ -.++.-+-|.|+|||.+.+.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 221 122345678999999984322111000 13556778999999999998
Q ss_pred eC
Q 012709 146 SP 147 (458)
Q Consensus 146 ~~ 147 (458)
..
T Consensus 285 ~~ 286 (328)
T KOG2904|consen 285 LV 286 (328)
T ss_pred ec
Confidence 75
No 175
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.18 E-value=6.7e-06 Score=78.89 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=95.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-------CCeEEEeeccCCC--CCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQL--PYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-------~~~~~~~~d~~~L--pfp~~sFD~I~ 113 (458)
....+|||...|-|.++...+++|.. .|..++.+++.++.|.-+. ..+.+..+|+.++ .|+|.+||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 34579999999999999999999854 8999999999999887662 2356666776554 58899999998
Q ss_pred ecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 114 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 114 ~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
----.+..... -.++.+|++|+|||||+++=..-.+..... .......+.+.+.+.+|..+..
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr-----G~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR-----GLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc-----cCChhHHHHHHHHhcCceeeee
Confidence 64332322221 247899999999999999877654432221 1223456777888889987654
No 176
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.18 E-value=1.2e-05 Score=85.24 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHH----cC--CCe
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLE----RG--LPA 92 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~e----r~--~~~ 92 (458)
..|.+.+.+.+...............|||||||+|.++...++.+ ....+|+++|-++.++...++ ++ -.+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V 243 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV 243 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE
Confidence 445555555554432211111124689999999999987776653 124589999999987755433 33 478
Q ss_pred EEEeeccCCCCCCCCCeeEEEecccccccc--ccHHHHHHHHHhcccCCcEEE
Q 012709 93 MIGSFASKQLPYPSLSFDMLHCARCGVDWD--QKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 93 ~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~--~~~~~~L~ei~RvLkPGG~li 143 (458)
.+..+|++....| ..+|+|+|=. +=.+- +-..+.|....|.|||||.++
T Consensus 244 ~vi~~d~r~v~lp-ekvDIIVSEl-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 244 TVIHGDMREVELP-EKVDIIVSEL-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEES-TTTSCHS-S-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeCcccCCCCC-CceeEEEEec-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999999998776 4899999732 22222 122357889999999999865
No 177
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.16 E-value=6.4e-06 Score=88.86 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC--CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L--pfp~~sFD~I~~~~ 116 (458)
....+||||||.|.+...++... |...++|+|++..-+..|.++ ++ ++.+...++..+ -++++++|.|+.++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 45689999999999999999975 778999999999877665444 44 455555554322 27889999999887
Q ss_pred ccccccccH--------HHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~--------~~~L~ei~RvLkPGG~liis~~ 147 (458)
. -+|+... ..++..+.++|||||.+.+.+-
T Consensus 426 P-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 426 P-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred C-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 6 6675422 3689999999999999999863
No 178
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=1.4e-06 Score=85.76 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=81.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 124 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~ 124 (458)
...++|+|||.|-.+.. + +.+.++|.|.+...+..|++.+.. ....+|+..+|+++.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 45899999999965421 1 456789999999999888877654 56677889999999999999999998888654
Q ss_pred --HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 125 --DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 125 --~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3489999999999999988877644
No 179
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.14 E-value=5.6e-06 Score=83.76 Aligned_cols=98 Identities=21% Similarity=0.268 Sum_probs=70.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..++|||||||+|.++.+.++.|. .+|.++|.|.-+ +.|. .++. -+.+..+..+.+.+|-.++|+|+|-+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 457999999999999999999985 489999998754 5554 4444 355666666666566789999998543
Q ss_pred cccc--cccHHHHHHHHHhcccCCcEEEE
Q 012709 118 GVDW--DQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 118 l~~~--~~~~~~~L~ei~RvLkPGG~lii 144 (458)
-... ..-...+|-.-.+.|+|||.++=
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 2221 11223566677899999998753
No 180
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.13 E-value=1e-06 Score=78.86 Aligned_cols=94 Identities=23% Similarity=0.353 Sum_probs=63.1
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCcccccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
-.+|||+|||.|.|+..|. +.+. .|+-++.. ..+.. +-....-++-.++ ..-+.+||+|.+..+|...
T Consensus 23 ~~~vLDiGcG~G~~~~~l~--~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~-~~~~~~fD~i~~~~~l~~~-- 91 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALA--KRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDP-PFPDGSFDLIICNDVLEHL-- 91 (161)
T ss_dssp TSEEEEESSTTSHHHHHHH--HTTS---EEEEEESSHHHHHH---TTSEEEEEECHTH-HCHSSSEEEEEEESSGGGS--
T ss_pred CCEEEEEcCCCCHHHHHHH--HhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhh-hccccchhhHhhHHHHhhc--
Confidence 4699999999999999998 4443 33333332 22222 1111111111121 1124799999999999987
Q ss_pred CCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
. +...+|-+|=|+|+|||++++.+..
T Consensus 92 -~---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 92 -P---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp -S---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred -c---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3 5788999999999999999997654
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.12 E-value=2.9e-05 Score=76.30 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=56.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCCCee---EEEecc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~sFD---~I~~~~ 116 (458)
+..+|||+|||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..++++ +|| +|+++-
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcC
Confidence 456999999999999999999863 6999999999999998762 4678888888888775 466 777763
No 182
>PLN02823 spermine synthase
Probab=98.11 E-value=3.6e-05 Score=78.80 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=74.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I~ 113 (458)
.+++||.||+|.|..++++++.. +..+++.+|+++.+++.|++.- .++.+...|+... ...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 56799999999999999988753 3458999999999999998752 3566777665442 33457899999
Q ss_pred ecccccccccc------HHHHHH-HHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~------~~~~L~-ei~RvLkPGG~liis~~ 147 (458)
+- +.-++... ...+++ .+.+.|+|||.+++...
T Consensus 182 ~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 75 22222111 135787 89999999999987643
No 183
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=2.9e-05 Score=72.55 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC----CCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~----~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|+|+|||||.++...+-.|. ..|+++|+.+++++.|+++. ..+.+...|..+.. +.||.++++--+=
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG 119 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFG 119 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCc
Confidence 456899999999999988887774 48999999999999998873 37888888887764 5689999875433
Q ss_pred ccccc-HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 120 DWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 120 ~~~~~-~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
.+... +..+|..+.++- ..+.+-+... ..+-++......+.....
T Consensus 120 ~~~rhaDr~Fl~~Ale~s----~vVYsiH~a~------------~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 120 SQRRHADRPFLLKALEIS----DVVYSIHKAG------------SRDFVEKFAADLGGTVTH 165 (198)
T ss_pred cccccCCHHHHHHHHHhh----heEEEeeccc------------cHHHHHHHHHhcCCeEEE
Confidence 33221 235666666554 3444443221 223345566666655554
No 184
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.08 E-value=1.4e-05 Score=81.30 Aligned_cols=102 Identities=20% Similarity=0.199 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEee-ccCCCCCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF-ASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~-d~~~Lpfp~~sFD~I~~~~ 116 (458)
..+..|||==||||++.....-.|. +++|.|++..|++-|+.+ ++ ...+... |+..+|+++.+||.|++--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 4456999999999999988876665 899999999999999887 32 3334444 9999999999999999831
Q ss_pred c-----ccccc---ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 C-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~-----l~~~~---~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- -..-. .--..+|..+.++|++||++++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 01111 1123789999999999999999987
No 185
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.08 E-value=5.9e-05 Score=74.87 Aligned_cols=154 Identities=23% Similarity=0.222 Sum_probs=100.9
Q ss_pred HHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHH----HcCCC--eEEEeeccCC
Q 012709 29 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQ 101 (458)
Q Consensus 29 ~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~----er~~~--~~~~~~d~~~ 101 (458)
.+.+......+...+.+-+||||.||.|......+..... ..++...|.|+..++..+ ++|.. ++|..+|+.+
T Consensus 120 ~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd 199 (311)
T PF12147_consen 120 EELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFD 199 (311)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCC
Confidence 3333333333334456679999999999877776654322 368999999999987654 45653 4788877544
Q ss_pred C---CCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCcEEEEEeCCCCcccc-----cccHHHHHHH-------
Q 012709 102 L---PYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAF-----LRNKENQKRW------- 164 (458)
Q Consensus 102 L---pfp~~sFD~I~~~~~l~~~~~~~--~~~L~ei~RvLkPGG~liis~~~~~~~~~-----~~~~e~~~~w------- 164 (458)
. .--+-..++++.+..+..+.++. ...|..+.+.+.|||+++.+..+..++-. ++....-+.|
T Consensus 200 ~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq 279 (311)
T PF12147_consen 200 RDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQ 279 (311)
T ss_pred HhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCH
Confidence 2 11134579999988766666543 26799999999999999999865433211 0000011123
Q ss_pred HHHHHHHHhhccEEEEee
Q 012709 165 NFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 165 ~~i~~l~~~~~w~~v~~~ 182 (458)
.+|.++.+..+|+++.+.
T Consensus 280 ~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 280 AEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHHHHHcCCchhhhe
Confidence 788999999998877654
No 186
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.05 E-value=3e-05 Score=73.00 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=84.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|+|+|||+|.++.++..+... ..|+-+|.. .-+.. +-+.|+ +-+++.-.+.+.. ..+||+|-+..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~---~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPE---LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc--
Confidence 57999999999988877522222 244555543 22221 223344 4445444455554 66899998643
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEE-eec--c-CCCccEEEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI-EIE--S-NSDERLLICQKP 451 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~-~~~--~-~~~~~~~~~~k~ 451 (458)
-..+..++-++-|+|||||.+++-+......++.++++.+-|.+..+ ..+ . .++..+.|.+|+
T Consensus 121 --------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 121 --------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred --------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 13456788899999999999999988888999999999999994433 222 1 122455666653
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.03 E-value=4.6e-05 Score=71.16 Aligned_cols=104 Identities=23% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCc--------cceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELL--------TMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLS 108 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~--------~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~s 108 (458)
.....|||--||+|.+....+..+.. ...+.|.|+++.+++.|+++ +. .+.+...|+..+++.+++
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 34568999999999998776543321 12388999999999999887 33 467888999999988899
Q ss_pred eeEEEecccccccccc---H----HHHHHHHHhcccCCcEEEEEe
Q 012709 109 FDMLHCARCGVDWDQK---D----GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 109 FD~I~~~~~l~~~~~~---~----~~~L~ei~RvLkPGG~liis~ 146 (458)
+|.|+++--.-.-... . ..+++++.++|++...+++..
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 9999997321111111 1 257889999999944444443
No 188
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.00 E-value=9.9e-05 Score=73.57 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=78.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEEE---e-eccCCCCCCCCCeeEEEec
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIG---S-FASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~~---~-~d~~~Lpfp~~sFD~I~~~ 115 (458)
..+++|||+|||+|.-.-.+.+.-....+++++|.|+.|++.++.- ....... . .-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 4567999999999976554443211234789999999999987654 1111110 0 001112332 34999999
Q ss_pred cccccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 116 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 116 ~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
+++....... ..+++.+.+.+.+ +++++++.. +.......++++.+...++.+++
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt--------~~Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT--------PAGFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC--------hHHHHHHHHHHHHHhhCCCceEC
Confidence 9998887622 2566666666665 999999854 44555556666666555555554
No 189
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.98 E-value=1.9e-05 Score=77.56 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-C-C-----CCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-P-Y-----PSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-p-f-----p~~sF 109 (458)
.++++|||||+++|.-+..++..-.+..+++.+|.++...+.|++. | ..+.+..+++... + + ..++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 3567999999999999999987533467899999999999988776 3 2567777765332 2 1 13689
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
|+|+.-. ....-..++..+.+.|+|||.+++-
T Consensus 158 D~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 9999642 2333446888889999999997764
No 190
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.95 E-value=0.00021 Score=67.29 Aligned_cols=99 Identities=15% Similarity=0.000 Sum_probs=67.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC-C-CC-CCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PS-LSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp-f-p~-~sFD~I~~ 114 (458)
..+|||++||+|.++..+++++.. +++++|.++.+++.++++ +. ++.+...|+.. +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 358999999999999999999753 799999999999888776 33 46677777633 22 1 12 24788876
Q ss_pred ccccccccccHHHHHHHH--HhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei--~RvLkPGG~liis~~ 147 (458)
--- +.. .....++..+ ..+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 432 111 1223444444 347888998777653
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.93 E-value=3.7e-05 Score=77.42 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|||||||+|.++..+++.+. +++++|+++.|++.++++ + .++.+..+|+...+++ .||+|+++-.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaNlP 110 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVANVP 110 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEecCC
Confidence 446899999999999999998753 799999999999998875 2 3578888888766654 6899998743
Q ss_pred ccccc
Q 012709 118 GVDWD 122 (458)
Q Consensus 118 l~~~~ 122 (458)
+++.
T Consensus 111 -Y~Is 114 (294)
T PTZ00338 111 -YQIS 114 (294)
T ss_pred -cccC
Confidence 4444
No 192
>PLN02244 tocopherol O-methyltransferase
Probab=97.91 E-value=1.9e-05 Score=81.08 Aligned_cols=95 Identities=21% Similarity=0.288 Sum_probs=58.9
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCCCCchh----hhcccccc----ccccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPM----ILDRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~~~l~~----~~~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-..|||+|||.|+++..|.+. +..|..+.+.| ..+.. +-++|+.. .-.|..+ ++.-+.+||+|.+.
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~-~~~~~~~FD~V~s~ 193 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALN-QPFEDGQFDLVWSM 193 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCccc-CCCCCCCccEEEEC
Confidence 357999999999999998832 12333333222 22322 22334421 1123322 22224799999987
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..+..+ . +...+|-||-|+|||||.+++-
T Consensus 194 ~~~~h~---~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 194 ESGEHM---P---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred Cchhcc---C---CHHHHHHHHHHHcCCCcEEEEE
Confidence 766555 2 2457899999999999999984
No 193
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00026 Score=65.77 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=74.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHH----HHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~----A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
+.-+||||||+|..+.+|++...+.....++|+++.+.+. |+.++..+..+..|...- +..++.|+++-+.-...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 5679999999999999999876677788999999998765 555566666666654332 23388898887643222
Q ss_pred --------------cc--cc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 121 --------------WD--QK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 121 --------------~~--~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|. .+ ..+++..+..+|.|.|.|++...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 21 11 12567778888999999999875
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7.1e-05 Score=70.92 Aligned_cols=96 Identities=19% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCEEEEECCCCchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHc---------------CCCeEEEeeccCCCCCCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER---------------GLPAMIGSFASKQLPYPSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er---------------~~~~~~~~~d~~~Lpfp~~ 107 (458)
++.+.||+|.|+|.++..++.. +.+....+|+|..++.++.+.++ ..+..+.++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3458999999999988877643 22333458999999999998776 1245567777776655668
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 108 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 108 sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.||.|||... .....+++...|+|||.+++-.
T Consensus 162 ~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 8999999743 1235567778889999998854
No 195
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.89 E-value=0.00014 Score=77.58 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEE---
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLH--- 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~--- 113 (458)
..+.+|||++||+|.-+.+++..-.....+++.|+++.-++..+++ |+ ++.+...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4557999999999999999887643345899999999988777655 54 4566667766552 2236799999
Q ss_pred -eccccccccccH------------------HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 -CARCGVDWDQKD------------------GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 -~~~~l~~~~~~~------------------~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.. -.+..++ .++|..+.+.|||||+++.++-..
T Consensus 192 PCSG~-G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 192 PCSGE-GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCC-cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 6632 1111121 367889999999999999988744
No 196
>PRK00536 speE spermidine synthase; Provisional
Probab=97.88 E-value=0.0003 Score=69.60 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=72.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCCCCCCCCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQLPYPSLSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~Lpfp~~sFD~I~ 113 (458)
+.+++||=||-|.|...+.+++.. . +|+-+|+.+.+++.|++. .+++.+... .. .-..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~--~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD--T-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC--C-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 567899999999999999999863 2 999999999999999984 234554431 11 11236899999
Q ss_pred eccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 114 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 114 ~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
+-.. .+..+.+.+.|.|+|||.++.....
T Consensus 145 vDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 145 CLQE------PDIHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred EcCC------CChHHHHHHHHhcCCCcEEEECCCC
Confidence 7532 2356889999999999999997653
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.87 E-value=0.00056 Score=64.31 Aligned_cols=93 Identities=27% Similarity=0.315 Sum_probs=69.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCCC-eEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~~-~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
+++|||+|.|.-+..|+=.. |..+++.+|....-+.+.+ +-++. +.+....++. +....+||+|++..+ .
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv-~-- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV-A-- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS-S--
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh-c--
Confidence 89999999998888887643 6779999999987554432 33654 8888887777 455688999998754 2
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEe
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
....++.-+...|++||.+++.-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEEc
Confidence 34568888999999999998875
No 198
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.86 E-value=1.3e-05 Score=80.30 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=72.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc-c-cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF-V-GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl-~-g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|..++. .|+-+|.. .-+.. +-+.|+ + -...|.-+ .. .+..||+|-+..+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl 194 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVL 194 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchh
Confidence 3799999999999999984332 34444443 32332 234455 1 11122211 11 26789999998888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe---ccH-----------HHHHHHHHHHhhccceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~---d~~-----------~~~~~~~~~~~~~~w~~~~~~ 436 (458)
... ++-.+..++-+|-|.|+|||++++- +.. -.-++++++.+. |++..+.
T Consensus 195 ~~l----~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 195 MFL----NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hhC----CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 654 2346778999999999999996541 111 113566666665 8877663
No 199
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.85 E-value=2.6e-05 Score=80.55 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=82.8
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|+|||.|....++... ....++|+|.++.++..+... ++ ...+...+....||+++.||.+.+..+..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 37999999999999999864 345889999999888766544 11 23346677888899999999999999888
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|.+ +...+++|++|+++|||+++..+...
T Consensus 190 ~~~-~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 190 HAP-DLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred cCC-cHHHHHHHHhcccCCCceEEeHHHHH
Confidence 877 67889999999999999999987543
No 200
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.83 E-value=0.00035 Score=69.93 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=75.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---------CCeEEEeeccCCC-CCCCCCeeEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDML 112 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---------~~~~~~~~d~~~L-pfp~~sFD~I 112 (458)
+.+++||-||-|.|..++.+++.. +..+++.+|+.++.++.|++.- .++.+...|.... .-..++||+|
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEE
Confidence 344799999999999999999875 4568999999999999999872 3445555554432 2122489999
Q ss_pred Eeccccccccc----cHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~----~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
++-.. -+... ....+++.+.|.|+++|.++...-
T Consensus 154 i~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 154 IVDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 97522 22111 014799999999999999999843
No 201
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.83 E-value=1.3e-05 Score=75.72 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-+|||+|||.|.++..|.++...|..+ |.+ ..+.. +-++|+ -....|..+ + .++.+||+|-+..+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gv-----D~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~ 104 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAW-----DKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVV 104 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEE-----eCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecc
Confidence 469999999999999998543334433 332 22221 223444 223344433 2 23678999998877
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
|-.+ ..-....++-+|-|.|+|||++++
T Consensus 105 ~~~~----~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 105 LMFL----EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhhC----CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 7433 234566789999999999999654
No 202
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.82 E-value=7.5e-05 Score=75.79 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.....+|+|.|.|..+..+.. .++ ++.+++.....+-.+.... ..+....+|.-.- .|. -|+|++-+|++||+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 357899999999999999999 555 6889999988776665554 4556665554443 443 36999999999999
Q ss_pred cc-HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 123 QK-DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 123 ~~-~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++ --++|+++..-|+|||.+++.+...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 64 3489999999999999999999744
No 203
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.82 E-value=1.6e-05 Score=75.98 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=61.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccccc---cc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl~g---~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
+.|||+|||.|+++..+.++-..+ +|+-++-+ +++..+- +.|+-+ ++ .|..+ . .+|.+||+|++.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887432222 22222322 4443332 345522 22 22212 1 2467899999988
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
+|... . +...++-++.|+|+|||++++.+-
T Consensus 76 ~l~~~---~---~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHI---K---DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhC---C---CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 88766 2 256789999999999999998653
No 204
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.79 E-value=0.00027 Score=67.51 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC---CCCeeEEEeccccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP---SLSFDMLHCARCGVDW 121 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp---~~sFD~I~~~~~l~~~ 121 (458)
.-++|||||=...+...- .+ -..|+.||+++. .-.+..-|....|.| +++||+|+|+.++-.+
T Consensus 52 ~lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV 117 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV 117 (219)
T ss_pred cceEEeecccCCCCcccc--cC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC
Confidence 369999999765443322 12 237999999873 122344455555553 6789999999875555
Q ss_pred ccc--HHHHHHHHHhcccCCcE-----EEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee
Q 012709 122 DQK--DGILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 183 (458)
Q Consensus 122 ~~~--~~~~L~ei~RvLkPGG~-----liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~ 183 (458)
++. .++.++.+.+.|+|+|. |+++.|.+-..... .-..+.+..+.+.++|..+..+.
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR-----y~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR-----YMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc-----ccCHHHHHHHHHhCCcEEEEEEe
Confidence 532 23899999999999999 88888755111000 01134567888999999988653
No 205
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.79 E-value=7.4e-05 Score=75.06 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
..+.|||||||+|.++.+.++.|.. +|.+++.|+ |.+.|++. . -++.++.+..++..+| ++.|+|++--.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccc
Confidence 4578999999999999999998864 899999865 77888765 2 2456666777777777 67999997533
Q ss_pred ccccc-ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 118 GVDWD-QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 118 l~~~~-~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
-.-.. +..-+....++|.|+|.|..+=+.
T Consensus 253 G~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 253 GYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 22222 111233445679999999987544
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.77 E-value=0.00044 Score=67.89 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
..+++||=||-|.|.....+++.. +..+++.+|+++..++.|++. ..++.+...|+... ....++||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 357899999999999999998753 346899999999999999874 24677887775432 122228999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+.-.. -..... ...+++.+.+.|+|||.+++...
T Consensus 154 Ii~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 154 IIVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 997422 222111 14799999999999999999764
No 207
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.75 E-value=5.7e-05 Score=72.57 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhh----cccc--ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..|.+.- ...=|.. .+-. +.+..+- +.++ +-+++.=.+.++.-+.+||+|++...
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~g---vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIG---LDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEE---EECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 479999999999999887421 1122222 2221 2222221 1232 22222112222221368999998766
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+... . +...+|-|+-|+|+|||++++.+
T Consensus 124 l~~~---~---~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 124 LRNV---P---DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccC---C---CHHHHHHHHHHHcCcCeEEEEEE
Confidence 6544 1 23567889999999999999865
No 208
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.74 E-value=2.4e-05 Score=77.36 Aligned_cols=98 Identities=22% Similarity=0.197 Sum_probs=63.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-------c--ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-------l--~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-.|||+|||.|.++..|.++-.+-. +|+-+|-+ +-|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988873211111 34444443 5555554431 1 222222234454323699999987
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
..+..+ . +...+|-||-|+|||||.+++-|
T Consensus 153 ~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNV---V---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccC---C---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 776655 2 45778999999999999998854
No 209
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.74 E-value=3.2e-05 Score=72.99 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=59.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccc--cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~--g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|||+|||.|.++..|.+++. .|+-+|-+ ..+..+ -+.|+- ....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999984433 34444443 333322 233431 1122221 222 35689999988887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
... +.-....++=++.|.|+|||++++
T Consensus 105 ~~~----~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFL----QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccC----CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 644 233566889999999999999554
No 210
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.73 E-value=9.8e-05 Score=72.75 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--------------------CC-----------C-
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------------------GL-----------P- 91 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--------------------~~-----------~- 91 (458)
.+.++||||||+-..-..-+...+ .+|+..|.++..++..++= |. +
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f--~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWF--EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTE--EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhh--cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 356899999999655433333333 3799999998876533210 11 0
Q ss_pred --eEEEeeccCCC-CCCC-----CCeeEEEeccccccccccHH---HHHHHHHhcccCCcEEEEEeCCCCc---cccccc
Q 012709 92 --AMIGSFASKQL-PYPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNP---QAFLRN 157 (458)
Q Consensus 92 --~~~~~~d~~~L-pfp~-----~sFD~I~~~~~l~~~~~~~~---~~L~ei~RvLkPGG~liis~~~~~~---~~~~~~ 157 (458)
..+...|.... |+.. ..||+|++++|+.....+.. ++++++.++|||||.|++..-.... -+..+-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 12444555443 3332 35999999999888877765 7899999999999999998754421 111111
Q ss_pred HHHHHHHHHHHHHHHhhccEEEEee
Q 012709 158 KENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 158 ~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
.-..-.-+.+++.++..++.+...+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1111123567777788888777644
No 211
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.72 E-value=6.6e-05 Score=69.60 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=78.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-cc-ccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~g-~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
++|||+|||.|.++.++.++.. .|+-++-. ..+..+-+ .|+ +- +..|+.+. .+.+||+|-++--|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~-----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK-----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCC
Confidence 4599999999999999984332 23333322 22222111 122 11 12344342 24689999877655
Q ss_pred cccccC---------------CCCCCcchhhhhhcccccCCceEEEeccHHH-HHHHHHHHhhccceEEEEeeccCCCcc
Q 012709 381 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIEIESNSDER 444 (458)
Q Consensus 381 ~~~~~~---------------~~~c~~~~~~~e~drilrp~g~~~~~d~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~ 444 (458)
-..... ..++.+..++-++.|+|+|||.+++-+.... ..++.+.++..-++........-..|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 172 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEE 172 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceE
Confidence 322100 0122256789999999999999998655444 567777777788888877644333344
Q ss_pred EEE
Q 012709 445 LLI 447 (458)
Q Consensus 445 ~~~ 447 (458)
+.+
T Consensus 173 ~~~ 175 (179)
T TIGR00537 173 LFA 175 (179)
T ss_pred EEE
Confidence 433
No 212
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.69 E-value=6.4e-05 Score=73.36 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=60.2
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..+|||+|||.|.++..|.+....|.. .|-. .-+..+-+++- +.. ..|. +.++..+.+||+|-++..+...
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~~-----~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQVTA-----LDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeEEE-----EECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhc
Confidence 467999999999999988743333333 3332 34444444431 111 1222 3344445689999876555322
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-+...+|-|+-|+|+|||.+++.
T Consensus 117 ------~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 117 ------GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred ------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 24568899999999999999986
No 213
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.66 E-value=2.4e-05 Score=77.93 Aligned_cols=98 Identities=18% Similarity=0.358 Sum_probs=62.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhccccccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-.|||+|||.||++-.+.++ ..+=|--|.. +.+++.. |-++||-+...=-|.-+...+-+||-|=+-++|.+.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehv 140 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHV 140 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGT
T ss_pred CEEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhc
Confidence 58999999999999999843 1443333322 2255554 457887544332233334444589999888888876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+=+...++-.++|+|+|||.+++.
T Consensus 141 ----g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 141 ----GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 2345677899999999999999974
No 214
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.63 E-value=0.00036 Score=66.42 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
...+|+|+.||.|.|+..+++.+ ....|+++|+++.+++..+++ ++ .+....+|...+.- .+.||-|++..
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l- 177 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL- 177 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE---
T ss_pred cceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-
Confidence 35699999999999999999832 245899999999998877665 33 46677888877754 68899999863
Q ss_pred cccccccHHHHHHHHHhcccCCcEEE
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFV 143 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~li 143 (458)
.+ ....+|..+.+++++||.+-
T Consensus 178 -p~---~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 -PE---SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -TS---SGGGGHHHHHHHEEEEEEEE
T ss_pred -hH---HHHHHHHHHHHHhcCCcEEE
Confidence 22 22348889999999999864
No 215
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.60 E-value=0.00023 Score=74.30 Aligned_cols=98 Identities=18% Similarity=0.165 Sum_probs=73.4
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
.+|||++||+|.++..++... ...+|+++|+++.+++.++++ ++ ...+...|+..+-...+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 589999999999999997653 234799999999999998775 33 34467777655321146799999752
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
. ..+..++..+.+.+++||.++++....
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAtD~ 161 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTATDT 161 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEecCc
Confidence 1 344568888788899999999996544
No 216
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00062 Score=65.87 Aligned_cols=134 Identities=15% Similarity=0.212 Sum_probs=94.2
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEe-eccCCCC---CCCCCeeEEEecc
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGS-FASKQLP---YPSLSFDMLHCAR 116 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~-~d~~~Lp---fp~~sFD~I~~~~ 116 (458)
.....+++||+|+.||.|+..++++|.. .|+++|..-.|+..-.+...++.... .++..+. +. +..|+|+|--
T Consensus 76 l~~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 76 LDVKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred cCCCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3456689999999999999999999865 89999999999888777766655432 2333331 22 3678999875
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCCC--------cccccccHHH-HHHHHHHHHHHHhhccEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN--------PQAFLRNKEN-QKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~--------~~~~~~~~e~-~~~w~~i~~l~~~~~w~~v~~ 181 (458)
.++.. ..+|-.+..+|+|+|.++.-.-+.- ..+-.++++. ...-.++.+.+...+|...--
T Consensus 153 SFISL----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 153 SFISL----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred ehhhH----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 54443 4588899999999998887664331 1122333333 333677888888888877653
No 217
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00053 Score=72.39 Aligned_cols=100 Identities=26% Similarity=0.383 Sum_probs=83.0
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----CeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
++|-+|||.-.+...+.+-|+. .|+.+|+|+-.++....++. ...+...|...+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999998876 89999999999988877753 45677888999999999999999877666654
Q ss_pred ccHH---------HHHHHHHhcccCCcEEEEEeCC
Q 012709 123 QKDG---------ILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 123 ~~~~---------~~L~ei~RvLkPGG~liis~~~ 148 (458)
.+.. ..+.++.|+|+|||+++.....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 3322 3578999999999998887763
No 218
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.59 E-value=0.00028 Score=73.58 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=77.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCCC-C---CCCCCeeEEE
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 113 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~L-p---fp~~sFD~I~ 113 (458)
+++|||+=|=||.++.+.+..|.. +++.+|.|...++.|+++ ++ +..+.++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 679999999999999999987753 899999999999999987 33 456777775432 1 2234899999
Q ss_pred ecccc--------ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCG--------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l--------~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.---- .....+-..++..+.++|+|||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 73211 1112223368889999999999999998644
No 219
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.59 E-value=0.00045 Score=71.60 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-CC-------------
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 105 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-fp------------- 105 (458)
.+|||++||+|.++..|++.. . +|+++|.++.+++.|+++ ++ ++.+..+|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-R--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-C--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 479999999999999888753 2 899999999999998876 44 577887776542 1 10
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...||+|+.---. ..-...+++.+.+ |++.++++..
T Consensus 285 ~~~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 1258999875321 2122345555544 7888888764
No 220
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.57 E-value=0.0005 Score=71.04 Aligned_cols=93 Identities=13% Similarity=0.122 Sum_probs=64.1
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-------C---C----
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-------Y---P---- 105 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-------f---p---- 105 (458)
.+|||+|||+|.++..|++.. . +|+++|+++.+++.|+++ ++ ++.+..+|+..+ + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-R--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888754 2 899999999999999876 33 577777776542 1 1 0
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 -~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
...||+|+.---. ..-...+++.+. +|++.++++..
T Consensus 276 ~~~~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcC
Confidence 1237988865321 111234555554 47888888875
No 221
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.57 E-value=2.9e-05 Score=76.18 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=61.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc---ccc-cccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~~~-~~~~~~~-~yp~t~dl~h~~ 377 (458)
..|||+|||.|.++..|.++.. +|+-++.. ..+..+-+ .|+.. +++ |..+ ++ ..+.+||+|.+.
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~-l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQD-IAQHLETPVDLILFH 119 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHH-HhhhcCCCCCEEEeh
Confidence 5899999999999999985433 34444443 44444332 34422 111 2211 22 235799999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.++... . +...++-|+-|+|+|||++++-
T Consensus 120 ~vl~~~---~---~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWV---A---DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhh---C---CHHHHHHHHHHHcCCCeEEEEE
Confidence 888766 2 2357899999999999999863
No 222
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.54 E-value=0.002 Score=61.93 Aligned_cols=157 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH----HHHHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~----~~i~~A~er~~~~ 92 (458)
.|...+.+...++..+....+.+.. .++.+||-+|+.+|....+++.--.+...|.+++.|+ +.+..|++| .++
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~i-k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NI 124 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPI-KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNI 124 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTE
T ss_pred ceeecCchhhHHHHHHHcCccccCC-CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-Cce
Confidence 4545567777778777554443333 3346999999999999999987654567899999999 456677776 455
Q ss_pred EEEeeccCCCC-C--CCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQLP-Y--PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~Lp-f--p~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.-...|+.... | --+.+|+|++- + .-++..+.++.++...||+||.++++-...... ........+.+-.+
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD---~t~~p~~vf~~e~~ 198 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQD-V--AQPDQARIAALNARHFLKPGGHLIISIKARSID---STADPEEVFAEEVK 198 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH----SSSSHHHHHHHHHH
T ss_pred eeeeccCCChHHhhcccccccEEEec-C--CChHHHHHHHHHHHhhccCCcEEEEEEecCccc---CcCCHHHHHHHHHH
Confidence 55555554321 1 12479999976 2 223333467888999999999999986422111 11112233444444
Q ss_pred HHHhhccEEEEe
Q 012709 170 FVENLCWELVSQ 181 (458)
Q Consensus 170 l~~~~~w~~v~~ 181 (458)
.++..+++.+.+
T Consensus 199 ~L~~~~~~~~e~ 210 (229)
T PF01269_consen 199 KLKEEGFKPLEQ 210 (229)
T ss_dssp HHHCTTCEEEEE
T ss_pred HHHHcCCChheE
Confidence 455566766654
No 223
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.52 E-value=0.0005 Score=64.53 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=67.8
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-CC---CCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP---YPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-Lp---fp~~sFD~I~~ 114 (458)
..+|||+-||+|.++...+++|.. +++.+|.+...++..+++ +. .+.+...|... ++ .....||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 459999999999999999999965 899999999999888777 32 35666665322 21 24678999997
Q ss_pred cccccccccc--HHHHHHHHH--hcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQK--DGILLLEVD--RVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~--~~~~L~ei~--RvLkPGG~liis~~ 147 (458)
--- +... ...++..+. .+|+++|.+++-..
T Consensus 121 DPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 632 3322 255677766 89999999998764
No 224
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.52 E-value=6.1e-05 Score=76.80 Aligned_cols=97 Identities=24% Similarity=0.316 Sum_probs=58.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc-ccc---ccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-RGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~-rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
+.|+|+|||.|.|+..|.+.... .|.-|=|.... .+...+-. .+. |-+.+.=-+.++. +.+||+|++.+++.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 78999999999999999844322 23322221110 00001100 010 1111111133454 789999999888754
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. -+...+|-++-|.|+|||.+|+.
T Consensus 202 ~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 34567899999999999999974
No 225
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.52 E-value=2.6e-05 Score=65.91 Aligned_cols=99 Identities=24% Similarity=0.301 Sum_probs=57.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccccc----ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g----~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|.++.+|..+....= |+-++-. ..+..+-+ .++-. +..|+... ...+..||+|.+++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC
Confidence 4689999999999999984102222 2222332 33333222 23322 22333122 44455699999998
Q ss_pred -cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 -LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 -~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+..+ -+......+|=++-+.|||||++++.+
T Consensus 79 ~~~~~~---~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFL---LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGC---CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccc---cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22222 111233456778999999999999975
No 226
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.50 E-value=0.00012 Score=72.65 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
.+|||+|||.|.+++.|.+.-.+.=..+|+-+|-+ +.+..+-+|.- +.. ..|-. .+|.=+.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~-~lp~~~~sfD~I~~~--~~--- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH-RLPFADQSLDAIIRI--YA--- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc-cCCCcCCceeEEEEe--cC---
Confidence 57999999999999998732111101234444543 55555554431 111 11212 223223689999742 22
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
...+-|+.|+|+|||++++..
T Consensus 161 --------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 --------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred --------CCCHHHHHhhccCCCEEEEEe
Confidence 123579999999999999853
No 227
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.50 E-value=8.2e-05 Score=69.62 Aligned_cols=115 Identities=12% Similarity=0.234 Sum_probs=69.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchh----hhcccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~----~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
++|+|+|||.|.++..|...... ..|+-+|.. ..+.. +-+.|+ |-+++.=.+.++ ...+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~---~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC---CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h
Confidence 58999999999877766422222 123333433 22222 122343 222221112222 357899998654 2
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhcc-ceEEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIE 436 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~-w~~~~~~ 436 (458)
..+.+++-++.|+|+|||.+++........++..+.+.+| |.....+
T Consensus 119 ---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 119 ---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred ---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 2345677788999999999999888877888888876654 5555444
No 228
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.50 E-value=4.8e-05 Score=75.27 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=58.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccc-ccccc-ccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGV-LHDWC-EAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~-~~~~~-~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||+|+++..|... ... .|+-++-+ +.+..+-+|- -+-. ..|.. .+|+ +.+||+|++...+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~~---~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YGA---HVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cCC---EEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 57999999999998888621 121 23333322 3333333321 1111 12221 1233 3699999987665
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
-++ ...+...++=|+-|+|+|||++++.|-
T Consensus 128 ~h~----~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHL----SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhC----CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 443 122456789999999999999999753
No 229
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00041 Score=62.26 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
.+++++|+|||.|-++....-. ....+.|+|+.+++++.+.++ .+++.+.+.+...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4578999999999888544432 345899999999999999877 34667888888888777899999998754
No 230
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.44 E-value=9.8e-05 Score=68.48 Aligned_cols=97 Identities=20% Similarity=0.167 Sum_probs=58.9
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---------C-CCCCCCCeeEEE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------Q-LPYPSLSFDMLH 113 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---------~-Lpfp~~sFD~I~ 113 (458)
...+|||+||++|.|+.++++++.+...++|+|+.+.. ....+....+|.. . ++-..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45799999999999999999987556799999998751 0012222222211 1 111126899999
Q ss_pred ecccccccccc----HH-------HHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARCGVDWDQK----DG-------ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~l~~~~~~----~~-------~~L~ei~RvLkPGG~liis~~ 147 (458)
|-.+ .+...+ .. ..+.-+...|+|||.+++-..
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 8642 222211 11 344455677999999998775
No 231
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.42 E-value=0.00016 Score=68.70 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=73.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc--cc-ccccccccCCC-C-CCccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 376 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl--~g-~~~~~~~~~~~-y-p~t~dl~h~ 376 (458)
-.+|||+|||.|.++..|.+..... +|+-+|-. +.+..+- ..|+ +- +..|..+.++. + +.+||++-.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~---~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDI---NFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCc---cEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 3789999999999999887322111 23333322 2222221 1132 11 22233233331 2 568999875
Q ss_pred cccccccc--cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 377 EGLLSLES--GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 377 ~~~~~~~~--~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
.......+ ....+.....+|-++.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 43221110 0012234568899999999999999985 67777777777777777777643
No 232
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.40 E-value=0.0001 Score=72.23 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=62.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
..|||+|||.|.++.+|.++-... .|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|-..
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~~p~~---~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~--- 102 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARRWPGA---VIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWV--- 102 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhC---
Confidence 679999999999999998431111 23334433 556666666642112222 2232 23689999998888755
Q ss_pred CCCCCcchhhhhhcccccCCceEEEe
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. +...++-|+-|+|+|||++++.
T Consensus 103 ~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 P---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred C---CHHHHHHHHHHhCCCCcEEEEE
Confidence 2 3467889999999999999985
No 233
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=7.7e-05 Score=67.97 Aligned_cols=136 Identities=15% Similarity=0.289 Sum_probs=90.0
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-CCC-------eEEEeec--cCCCCCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP-------AMIGSFA--SKQLPYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-~~~-------~~~~~~d--~~~Lpfp~~sFD~I~~ 114 (458)
+++||++|.|.-.++..+.....+..+|..+|-++..++-.++- ..+ +-..... ..........||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 36899999996666665555556778899999999888765543 111 1011111 1112234468999999
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEeee-ceEEEeecC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD-ETVVWKKTS 192 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~~-~~~iw~K~~ 192 (458)
+.|++ +.+....+++.+.+.|+|.|.-++..|-. -+..+.+.......+|......+ +..+||+-.
T Consensus 110 ADClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRR-----------g~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRR-----------GQSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccchh-HHHHHHHHHHHHHHHhCcccceeEecCcc-----------cchHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 99944 45455678999999999999988887622 11234555666777787776544 567888754
No 234
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.38 E-value=0.00035 Score=65.28 Aligned_cols=130 Identities=16% Similarity=0.226 Sum_probs=68.7
Q ss_pred eEEeeccccchhhhhhhhccCCC---eEEEEeecCCCCCCchhhhccccccccccccccC------CCC-CCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAF------PTY-PRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~---~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~------~~y-p~t~dl~h~~ 377 (458)
.+|||+|||.|+++.++..+-.+ |+..=+.|.. . + .|+--+..|..+.. ..+ +.+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 58999999999998877633222 4443332211 0 0 12221223443321 011 3578887765
Q ss_pred cccc---cccc--CCCCCCcchhhhhhcccccCCceEEEe----cc-HHHHHHHHHHHhhccceEEEEeecc---CCCcc
Q 012709 378 GLLS---LESG--HRHRCSTLDIFTEIDRILRPEGWVIIR----DT-ARLIESARALTTRLKWDARVIEIES---NSDER 444 (458)
Q Consensus 378 ~~~~---~~~~--~~~~c~~~~~~~e~drilrp~g~~~~~----d~-~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~ 444 (458)
+... .+.. ....+.+..+|-++-|+|||||.+++- ++ .++++.++. . =|+..+...-. .+.|+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~-~~~~~~~~~~~~~~~~~~~ 181 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---L-FEKVKVTKPQASRKRSAEV 181 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---h-hceEEEeCCCCCCcccceE
Confidence 4311 0100 001123467899999999999999983 11 233433333 2 25566654322 33489
Q ss_pred EEEEE
Q 012709 445 LLICQ 449 (458)
Q Consensus 445 ~~~~~ 449 (458)
.+||.
T Consensus 182 ~~~~~ 186 (188)
T TIGR00438 182 YIVAK 186 (188)
T ss_pred EEEEe
Confidence 99885
No 235
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00099 Score=65.70 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=62.1
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC---CCeEEEeeccCCCCCCCC-CeeEEEecccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSL-SFDMLHCARCGVD 120 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~---~~~~~~~~d~~~Lpfp~~-sFD~I~~~~~l~~ 120 (458)
..+|||||+|.|.++..|++++. .|+++|+++.+++..+++. .+..+..+|+...++++- .++.|+++-- ++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlP-Y~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLP-YN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEcCC-Cc
Confidence 57999999999999999999875 7999999999999988873 478899999988888754 6899998743 44
Q ss_pred cc
Q 012709 121 WD 122 (458)
Q Consensus 121 ~~ 122 (458)
+.
T Consensus 107 Is 108 (259)
T COG0030 107 IS 108 (259)
T ss_pred cc
Confidence 44
No 236
>PRK08317 hypothetical protein; Provisional
Probab=97.36 E-value=0.00016 Score=68.77 Aligned_cols=96 Identities=25% Similarity=0.316 Sum_probs=59.8
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhcc--cccccc----ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~----~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|||+|||.|.++..+.+.- ... +|+-++.. +.+..+-++ +.-... .|..+ ++.-+.+||+||+..+
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPEG---RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG-LPFPDGSFDAVRSDRV 96 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCCc---EEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc-CCCCCCCceEEEEech
Confidence 579999999999998887321 111 23333332 444444444 111111 12211 2222368999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
|... . +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~---~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHL---E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhcc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 8766 2 35678999999999999998753
No 237
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.35 E-value=0.0012 Score=66.43 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc------CCccceEEEEcCCHHHHHHHHHc----CC-
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GL- 90 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~------~~~~~~v~gvD~S~~~i~~A~er----~~- 90 (458)
....+.+.+++. .....+|||-.||+|.|...+.+. .....++.|+|+++.++..|+-+ +.
T Consensus 32 ~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 444455555552 234458999999999998887762 12345899999999999888654 22
Q ss_pred --CeEEEeeccCCCCCC--CCCeeEEEeccccccc--c------------------ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 91 --PAMIGSFASKQLPYP--SLSFDMLHCARCGVDW--D------------------QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 91 --~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~--~------------------~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
...+...|.-..+.. .+.||+|+++--+-.. . .....++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 223555665443322 4789999997332221 0 011257888999999999999988
Q ss_pred C
Q 012709 147 P 147 (458)
Q Consensus 147 ~ 147 (458)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 6
No 238
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.34 E-value=0.00017 Score=68.86 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=58.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc---cccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg---l~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|.|...|.+....+ .++-++.. ..+...-++. +.-+..|. +.++..+.+||+|.++.++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998432211 11222221 2222222221 11111222 2334445789999988887644
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+...++-++.|+|+|||++++.
T Consensus 112 ------~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 112 ------DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred ------cCHHHHHHHHHHHcCCCcEEEEE
Confidence 24567899999999999999985
No 239
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.32 E-value=0.00011 Score=74.84 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=65.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||+|||.|.|+..|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=+.++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 4799999999999998884333 44445554 445554433 22 22222223445544579999999988
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+.+. . +...+|-|+-|+|||||.+++.+
T Consensus 208 LeHv---~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHV---A---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhc---C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8776 2 45678999999999999999864
No 240
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.30 E-value=0.0031 Score=60.74 Aligned_cols=99 Identities=16% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCC-C-----CCCCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-L-----PYPSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~-L-----pfp~~sFD~ 111 (458)
+++++||||.=||.-+...+..-....+++++|++++..+.+.+. +. .+.+..+.+.+ + ..+.++||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 457999999999987777776555567999999999998877554 32 45555554322 1 245689999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 112 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 112 I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
++. -+|..+-...+.++.++||+||.+++--
T Consensus 153 aFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 153 AFV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 983 5666665688999999999999998853
No 241
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.30 E-value=0.00011 Score=76.67 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=61.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc--ccccccccccccCCCCCCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r--gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~ 384 (458)
..|||+|||.|+++..+.+. ..+ .|+-++-. ..+..+-+| |+ .+ .--+..+...+.+||.|.+.++|...
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehv- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHV- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhC-
Confidence 57999999999999888732 232 33333433 555555443 32 11 11112222235789999998888754
Q ss_pred cCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 385 GHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 385 ~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..-....++-++.|+|+|||++++.
T Consensus 242 ---g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 242 ---GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ---ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1234567899999999999999985
No 242
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.0032 Score=60.50 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=81.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH----HcCCC-eEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~----er~~~-~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..+++|||+|.|.-+.-|+= -.+..+++.+|....-+.+.+ +-+.+ +.+....++.+.-...-||+|.|..+ -
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-a 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-A 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc-c
Confidence 57999999999999988873 236668999999876555443 33665 88888888877532111999998753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
+...++.-+..++|+||.++..-. ......+.+.+......++.....
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~----------~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKG----------LAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhH----------HhhhhhHHHHHHHHHhhcCcEEEE
Confidence 334467778889999998765432 112233455566666666655553
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.28 E-value=0.0021 Score=65.45 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHHcC-----CCeEE--EeeccCC----CCC--CCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERG-----LPAMI--GSFASKQ----LPY--PSL 107 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er~-----~~~~~--~~~d~~~----Lpf--p~~ 107 (458)
...+++|+|||.|.-+..|++.- .....++++|+|.++++.+.++- ..+.+ ..+|..+ ++- ...
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 33489999999998777665431 12457999999999999887652 12333 4444322 221 123
Q ss_pred CeeEEEecc-ccccccccH-HHHHHHHHh-cccCCcEEEEEeC
Q 012709 108 SFDMLHCAR-CGVDWDQKD-GILLLEVDR-VLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~-~l~~~~~~~-~~~L~ei~R-vLkPGG~liis~~ 147 (458)
...+++... .+-++.... ..+|+++.+ .|+|||.|++..-
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 456666544 444454332 278999999 9999999999754
No 244
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.27 E-value=0.00051 Score=68.86 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC---CeEEEeeccCC-CC--CCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~---~~~~~~~d~~~-Lp--fp~~sFD~I~~ 114 (458)
.++|||+=|=||.|+.+.+..|. .+++.+|.|..+++.|+++ ++ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 46999999999999999887664 4899999999999999887 33 45677766533 11 12368999998
Q ss_pred cccc-----ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 115 ARCG-----VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 115 ~~~l-----~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
---. .....+-..++..+.++|+|||.++++...
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3211 111223346888999999999999887763
No 245
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0045 Score=61.04 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=88.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCC--CCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYP--SLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp--~~sFD~I~~ 114 (458)
.++.+|+|-|.|+|+++.++++.-.|..++...|+++.-.+.|++. + -++.+..-|.....|. +..+|.|+.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVFL 183 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVFL 183 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEEE
Confidence 4456999999999999999999877889999999999888888765 3 3667777776666554 467898874
Q ss_pred ccccccccccHHHHHHHHHhcccCCc-EEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG-~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
- ++ .|-.++--++.+||.+| +|+-..|+. +..++-.+.+.+.+|..+..
T Consensus 184 D-----lP-aPw~AiPha~~~lk~~g~r~csFSPCI------------EQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 184 D-----LP-APWEAIPHAAKILKDEGGRLCSFSPCI------------EQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred c-----CC-ChhhhhhhhHHHhhhcCceEEeccHHH------------HHHHHHHHHHHhCCCceEEE
Confidence 3 33 34456777788998876 676666643 22345566677778876653
No 246
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.22 E-value=0.0006 Score=63.61 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=67.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|+|+|||.|.++.++..+.... +|+-++.. ..+..+-+ .|+ +-++. ......++..||++.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~~ 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSL---QVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGSG 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCCc
Confidence 589999999999998886332211 23333332 22332211 222 11111 01112345689999865432
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec-cHHHHHHHHHHHhhccce
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 431 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d-~~~~~~~~~~~~~~~~w~ 431 (458)
..+..++-++-|.|+|||++++.+ ..+..+++.++++...++
T Consensus 108 ---------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 ---------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 235667888999999999999975 455677888888888885
No 247
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.21 E-value=0.00057 Score=64.53 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=79.8
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc--cccc---ccccccccCCCCCCccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r--gl~g---~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+||++++.|||-|-|.+.|..+-+.+.++-++|.- |..+-+| |+-. .-.+-.+..| +.+|||||.+.++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~A----l~~Ar~Rl~~~~~V~~~~~dvp~~~P--~~~FDLIV~SEVl 116 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRA----LARARERLAGLPHVEWIQADVPEFWP--EGRFDLIVLSEVL 116 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHH----HHHHHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-G
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHH----HHHHHHhcCCCCCeEEEECcCCCCCC--CCCeeEEEEehHh
Confidence 79999999999999999999776677777665432 1111111 1110 1111122233 4799999999999
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEE---eccHH-------HHHHHHHHHhhccceEEEEeeccCC-CccEEEEE
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTAR-------LIESARALTTRLKWDARVIEIESNS-DERLLICQ 449 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~d~~~-------~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~ 449 (458)
--+ .+.-.+..++-.|...|+|||.+|+ ||... --+.|.+|+...-=++.-..-..++ .|.-|+++
T Consensus 117 YYL---~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 117 YYL---DDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp GGS---SSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred HcC---CCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 877 4444566778888899999999998 44332 1466777766665555544443333 36556553
No 248
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.21 E-value=0.0011 Score=65.09 Aligned_cols=111 Identities=17% Similarity=0.243 Sum_probs=64.7
Q ss_pred eEEeeccccchhhhhhhhccCCC-eEEEEeecCCCCCCchhhhc----cccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~~~l~~~~~----rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
.+|||+|||.|..+.++...... |..+-+-| ..+..+-+ .|+-...+ +..-..+||+|.++-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 67999999999888877632222 33222211 22332222 23311111 1110116999986533222
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+..++-++-|+|+|||++|+.+-. +..+.+.+.+....+++....
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEE
Confidence 235677999999999999998533 345677777777778765543
No 249
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.20 E-value=0.00022 Score=72.53 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccccccccCCCCCCccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
+.|+|+|||.|.++.+|.... +--|.-|=|.... .+...+ -..+-+.+..-=-+.++. +.+||+|-+.+++-+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 789999999999988887332 2223333332211 111111 001111111100122332 247999999988765
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. -+...+|-|+-|+|||||.+++.
T Consensus 201 ~------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 R------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred c------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 4 35678999999999999999974
No 250
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.20 E-value=0.0005 Score=68.93 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccC-CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAF-PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~-~~yp~t~dl~h~~~~~~ 381 (458)
.+|||+|||.|.++.++. ....- .|+-+|-. ..+..+-++ |+-..+...+... ...+..||+|.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa--~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAAL--KLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHH--HcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 589999999999887776 32211 23333322 233332221 2211122222211 22246899999865443
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~ 435 (458)
. +..++-++-|+|+|||++++..-. +-.+++.+.+++- |+....
T Consensus 237 ~---------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 V---------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H---------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 2 235788999999999999996432 2345566655554 665443
No 251
>PRK14968 putative methyltransferase; Provisional
Probab=97.19 E-value=0.00077 Score=62.13 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=75.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh---------hccccccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~---------~~rgl~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
+.|||+|||.|.++..|.+++. +|+-++-. +.+..+ -+||+.-+-+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 5799999999999999985433 33333332 333332 123344456777776653 479998554
Q ss_pred ccccccc---------------cCCCCCCcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhccceEEEEe
Q 012709 378 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 378 ~~~~~~~---------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.-|.... .......+..++-++.|+|+|||.+++--. ....+++.+++....|+.....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 4332100 000112245688999999999999876422 2234677888888888766544
No 252
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.18 E-value=0.00066 Score=64.17 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=57.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc-----cccccccccccCCCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg-----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|.++.++.....+- -+++-++.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+++..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~~~--~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAPDR--GKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcCCC--ceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 589999999999999887432110 022222222 2333333322 1111122222 222235899999776654
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 346678999999999999999853
No 253
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.18 E-value=0.00039 Score=68.05 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=57.5
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----c-ccccccccccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l-~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.+|+|+|||.|.++..|.++-... +|+-+|.. .-+..+-++- + .+-..+| . .+.+||+|+++..|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~---~--~~~~fD~v~~~~~l 103 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAA---RITGIDSSPAMLAEARSRLPDCQFVEADIASW---Q--PPQALDLIFANASL 103 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHhCCCCeEEECchhcc---C--CCCCccEEEEccCh
Confidence 4789999999999998887431111 22222322 2222222220 1 1222222 1 23589999999888
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... . +...++-+|-|+|+|||.+++.
T Consensus 104 ~~~---~---d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 104 QWL---P---DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hhC---C---CHHHHHHHHHHhcCCCcEEEEE
Confidence 654 2 3467899999999999999985
No 254
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.18 E-value=0.0061 Score=62.48 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=88.6
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+.+|||.=||.|.|+..+++.+.+ +|+++|+++.++...+++ +. .+....+|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 569999999999999999998864 499999999999988776 22 366778888887765588999998742
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhcc
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 176 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w 176 (458)
. ....++..+.+.+++||.+-+.........+. ...+.+...+.+.+.
T Consensus 266 -~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~------~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 -K---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEE------RPEKRIKSAARKGGY 313 (341)
T ss_pred -C---cchhhHHHHHHHhhcCcEEEEEeccchhhccc------chHHHHHHHHhhccC
Confidence 1 23458888999999999999988754221110 124556666666654
No 255
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.16 E-value=0.009 Score=61.12 Aligned_cols=95 Identities=15% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.+..++||+||++|.++..|+++|. .|+++|..+ |-.. .....++.....+.....-+.+.+|.++|--+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv----- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQS-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV----- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHh-hhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----
Confidence 4567999999999999999999875 899999554 3222 23345677766665444222578999998632
Q ss_pred ccHHHHHHHHHhcccCC--cEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPG--GYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPG--G~liis~~ 147 (458)
..|.+++.-+.+.|..| ..+++.-.
T Consensus 280 e~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 280 EKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 35677888888888777 45666554
No 256
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.16 E-value=0.00032 Score=58.18 Aligned_cols=90 Identities=27% Similarity=0.290 Sum_probs=45.6
Q ss_pred eeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc--ccccc-cccccCCCCC-Ccccccccccccc
Q 012709 311 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 381 (458)
Q Consensus 311 ~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl--~g~~~-~~~~~~~~yp-~t~dl~h~~~~~~ 381 (458)
||+|||.|.+...|++.- -...++-+|-+ +-+..+-+| +. .-... +--+.+...+ .+||+|.+.++|.
T Consensus 1 LdiGcG~G~~~~~l~~~~---~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 799999999999998542 22233334433 444322222 21 00111 1112233333 4999999999998
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWV 409 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~ 409 (458)
.+ =.+..++-.+-+.|+|||.+
T Consensus 78 ~l------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HL------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --------S-HHHHHHHHTTT-TSS-EE
T ss_pred hh------hhHHHHHHHHHHHcCCCCCC
Confidence 76 24567899999999999985
No 257
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.13 E-value=0.001 Score=63.56 Aligned_cols=125 Identities=14% Similarity=0.215 Sum_probs=66.7
Q ss_pred eEEeeccccchhhhhhhhccCC---CeEEEEeecCCCCCCchhhhccccccccccccc---------cCCCCCCcccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 375 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~---~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~---------~~~~yp~t~dl~h 375 (458)
.+|||+|||+|+|+..|.++-. .|..+-+.|. +.+ .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 4799999999999887764321 2333333321 111 122222223222 233 35789988
Q ss_pred ccccccccccCCCCC--------CcchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccce-EEEEeecc--
Q 012709 376 AEGLLSLESGHRHRC--------STLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD-ARVIEIES-- 439 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c--------~~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~-~~~~~~~~-- 439 (458)
++...... .... .++.+|-|+=|+|+|||.+++.. ..+++.++++ +|+ +.+.+...
T Consensus 123 S~~~~~~~---g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-----~f~~v~~~Kp~ssr 194 (209)
T PRK11188 123 SDMAPNMS---GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-----LFTKVKVRKPDSSR 194 (209)
T ss_pred cCCCCccC---CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-----CceEEEEECCcccc
Confidence 65432211 1110 12468899999999999999942 2233333322 343 44443322
Q ss_pred -CCCccEEEEEe
Q 012709 440 -NSDERLLICQK 450 (458)
Q Consensus 440 -~~~~~~~~~~k 450 (458)
.+.|..+||..
T Consensus 195 ~~s~e~~~~~~~ 206 (209)
T PRK11188 195 ARSREVYIVATG 206 (209)
T ss_pred ccCceeEEEeec
Confidence 23488888863
No 258
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.11 E-value=0.004 Score=67.62 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCC-------ccceEEEEcCCHHHHHHHHHc----C-CCeEEEeeccCCC-----CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL-----PYPS 106 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~-------~~~~v~gvD~S~~~i~~A~er----~-~~~~~~~~d~~~L-----pfp~ 106 (458)
...+|||.|||+|.+...++.+.. ...++.|+|+++..+..|+.+ + ....+...+.... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 345899999999999988876421 125789999999999988765 1 1223333332111 1112
Q ss_pred CCeeEEEeccc
Q 012709 107 LSFDMLHCARC 117 (458)
Q Consensus 107 ~sFD~I~~~~~ 117 (458)
+.||+|+++--
T Consensus 111 ~~fD~IIgNPP 121 (524)
T TIGR02987 111 DLFDIVITNPP 121 (524)
T ss_pred CcccEEEeCCC
Confidence 57999999743
No 259
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.11 E-value=0.0019 Score=63.67 Aligned_cols=137 Identities=22% Similarity=0.340 Sum_probs=76.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc---cc---c-cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF---V-GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r---gl---~-g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-+|+|+|||.|.++.+|...-... +|+-++.. ..+..+-++ +. + =+-.|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~---~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA---EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 469999999999999997432111 33333332 333332221 21 1 12234444443 368999976533
Q ss_pred ccccc------cC-C-C---------CCC---cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccce-EEEEeec
Q 012709 380 LSLES------GH-R-H---------RCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD-ARVIEIE 438 (458)
Q Consensus 380 ~~~~~------~~-~-~---------~c~---~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~-~~~~~~~ 438 (458)
+.... .. . . ... +..++-++-++|+|||++++.-...--+.+++++....+. +... .+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~-~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETR-KD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEe-cC
Confidence 22110 00 0 0 001 2356777889999999999964444456677787776665 3333 23
Q ss_pred cCCCccEEEEEe
Q 012709 439 SNSDERLLICQK 450 (458)
Q Consensus 439 ~~~~~~~~~~~k 450 (458)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 344588888765
No 260
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.11 E-value=0.003 Score=60.29 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCC----CeEEEeeccCC-C-CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQ-L-PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~----~~~~~~~d~~~-L-pfp~~sFD~I~~~~ 116 (458)
..+++||+||-|-|.....+..+.. ..=.-++.+++.++..++.+. ++.+..+--++ + .++++.||-|+--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yD- 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYD- 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEee-
Confidence 4457999999999999999887642 345678999999999888754 34444333222 2 3678899999854
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+-..-++...+.+.+.|+|||+|.+-+..
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 332333355578889999999999987754
No 261
>PTZ00146 fibrillarin; Provisional
Probab=97.09 E-value=0.00036 Score=69.96 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcc-ccccccccccccC--CCCCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~~~~ 381 (458)
-+|||+|||.|+|..+|.+. +-.|..+-+.|.-..+.+.++-+| +++-+..|-+.+. ...+-++|+|-++-.
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-- 211 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-- 211 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC--
Confidence 47999999999999988743 123555543322111344444443 5666777766542 111236777743321
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
..=....+++|+.|+|+|||+|+|
T Consensus 212 ------~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 212 ------QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred ------CcchHHHHHHHHHHhccCCCEEEE
Confidence 001122456799999999999998
No 262
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0048 Score=58.77 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=68.8
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCCCCeeEEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLH 113 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~~sFD~I~ 113 (458)
-.+..+|+|+||-+|+++..++++......|+++|+.+-- --..+.+.++|+..-+ +....+|+|+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~ 116 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVL 116 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEE
Confidence 3456799999999999999999876555569999997641 1234777887766543 3344579999
Q ss_pred eccc---cccccccH-------HHHHHHHHhcccCCcEEEEEeC
Q 012709 114 CARC---GVDWDQKD-------GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 114 ~~~~---l~~~~~~~-------~~~L~ei~RvLkPGG~liis~~ 147 (458)
|-.. --++..|. ..++.-+..+|+|||.|++-..
T Consensus 117 sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 117 SDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 6422 11111111 2456667789999999999876
No 263
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.05 E-value=0.0021 Score=66.97 Aligned_cols=99 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC-CCCCCeeEEEeccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP-YPSLSFDMLHCARCGV 119 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp-fp~~sFD~I~~~~~l~ 119 (458)
-+|||..||+|..+..++++.....+|+++|+++.+++.++++ +. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC---
Confidence 4899999999999999998721124899999999999988776 33 3566666655441 1235799998642
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
+ ..+..++..+.+.+++||.+.++....
T Consensus 123 -f-Gs~~~fld~al~~~~~~glL~vTaTD~ 150 (374)
T TIGR00308 123 -F-GTPAPFVDSAIQASAERGLLLVTATDT 150 (374)
T ss_pred -C-CCcHHHHHHHHHhcccCCEEEEEeccc
Confidence 2 244569999999999999999995443
No 264
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.0051 Score=65.23 Aligned_cols=98 Identities=21% Similarity=0.256 Sum_probs=71.0
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCCCC---CCCeeEEEe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lpfp---~~sFD~I~~ 114 (458)
.+..+|||+=||.|.|+..|+++.. +|+|+|+++++++.|+++ ++ ++.+..++++..... ...||.|+.
T Consensus 292 ~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 292 AGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred cCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 3456999999999999999997654 899999999999998776 33 588888887776422 357899985
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
--- -..-...+++.+. -++|-..+++|..
T Consensus 369 DPP---R~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 369 DPP---RAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred CCC---CCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 421 1111223455444 4577788888875
No 265
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.02 E-value=0.00032 Score=68.30 Aligned_cols=97 Identities=21% Similarity=0.212 Sum_probs=57.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccc--cccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFV--GVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~--g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||++||+|-++..|.++-.+-. .|+-+|-+ +-|.++-+| |+. =....=.|.+|.-..|||.+=++..+
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~--~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl 126 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNG--KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL 126 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred CEEEEeCCChHHHHHHHHHHCCCcc--EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence 4899999999999888874312211 34444544 566665544 331 11122234455434799999877666
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-.. ++....|-||=|+|||||.++|=
T Consensus 127 rn~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 127 RNF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp GG-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 544 45677899999999999999973
No 266
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.005 Score=57.85 Aligned_cols=102 Identities=20% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCC-CCCCC--CeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~L-pfp~~--sFD~I~~ 114 (458)
...++||+=+|+|.++...+++|.. .++.+|.+...++..+++ + .++.+...|+... +.... .||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3469999999999999999999864 899999999999988887 3 4566666665532 22223 4999997
Q ss_pred ccccccccccHHHHHHH--HHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLE--VDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~e--i~RvLkPGG~liis~~ 147 (458)
---+..-.-+....+.. -..+|+|+|.+++-..
T Consensus 121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 121 DPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred CCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 54322101111223333 5688999999999764
No 267
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.00 E-value=0.00037 Score=63.18 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=48.9
Q ss_pred eEEEeeccCCCCCCCCCeeEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 92 AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 92 ~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
+.+.+-.....+|.++|.|+|+|..++.|++-+.+ .++++++|+|||||++-++.|....
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 33333334566899999999999999999886544 7999999999999999999987753
No 268
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.97 E-value=0.0013 Score=63.64 Aligned_cols=121 Identities=23% Similarity=0.344 Sum_probs=71.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccc--cccc-ccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl--~g~~-~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||.|.|+.++...-... +|+-++.. ..+..+ -..|+ +-++ .|+-+.++ +.+||+|-++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 479999999999999998431121 33333332 223222 12343 1122 23333343 368999987654
Q ss_pred ccccccC---CCCCC-----------------cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 380 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 380 ~~~~~~~---~~~c~-----------------~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
|...... ...+. ...++-++-|+|+|||.+++.......+++++++....++..
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 4321000 00000 125677899999999999998766667788888888777643
No 269
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.94 E-value=0.006 Score=68.62 Aligned_cols=126 Identities=13% Similarity=-0.016 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC----------------------------------
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---------------------------------- 66 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~---------------------------------- 66 (458)
.+...+.++..+....+ ...+...++|-+||+|.+....+...
T Consensus 170 ~Apl~etlAaa~l~~a~---w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 170 EAPLKENLAAAILLRSG---WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCcHHHHHHHHHHcC---CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 34455555554443322 11234689999999999987765410
Q ss_pred -------CccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC--CCCeeEEEecccccccccc---HHHH
Q 012709 67 -------LLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP--SLSFDMLHCARCGVDWDQK---DGIL 128 (458)
Q Consensus 67 -------~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~~~~---~~~~ 128 (458)
....+++|+|+++.+++.|+++ |+ .+.+..+|..+++.+ .++||+|+++--.-.-..+ ...+
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l 326 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL 326 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence 0113689999999999999887 44 367888888887654 3579999998442221111 1233
Q ss_pred HHH---HHhcccCCcEEEEEeCCC
Q 012709 129 LLE---VDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 129 L~e---i~RvLkPGG~liis~~~~ 149 (458)
..+ ..+...+|+.+++.+...
T Consensus 327 Y~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 327 YSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCH
Confidence 333 334444898887776533
No 270
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.93 E-value=0.0012 Score=65.41 Aligned_cols=137 Identities=12% Similarity=0.147 Sum_probs=81.1
Q ss_pred CCCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchh----hhhhhhccCC--CeE
Q 012709 259 GVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGG----FNSALLEKGK--SVW 332 (458)
Q Consensus 259 ~~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~----faa~l~~~~~--~~~ 332 (458)
-++...|.-|...|....+.....+......+ .--.|+|+|||+|- .|-.|.+... .-|
T Consensus 67 ti~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~---------------~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~ 131 (264)
T smart00138 67 TTNETRFFRESKHFEALEEKVLPLLIASRRHG---------------RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREP 131 (264)
T ss_pred hcCCCcccCCcHHHHHHHHHHhHHHHHhcCCC---------------CCEEEEeccccCChHHHHHHHHHHHHhhhcCCC
Confidence 34567799999999997766543221111111 22579999999994 5655653211 123
Q ss_pred EEEeecCCCC-CCchhhhcccc-----------------------------------ccccccccccCCCCCCccccccc
Q 012709 333 VMNVVPTIGT-NHLPMILDRGF-----------------------------------VGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 333 ~m~v~~~~~~-~~l~~~~~rgl-----------------------------------~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
...|+-+|-. .-|..+- +|. .=..||-.+.-+ -+..||+|.+
T Consensus 132 ~~~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c 209 (264)
T smart00138 132 DVKILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFC 209 (264)
T ss_pred CeEEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe
Confidence 4455555543 3333221 221 001344444321 2468999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccHH
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 416 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~ 416 (458)
.++|.... .=....++-++-|+|+|||++++-....
T Consensus 210 rnvl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 210 RNVLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred chhHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 88876551 1224468999999999999999976543
No 271
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.92 E-value=0.00038 Score=67.51 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=57.2
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc---cc-ccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VG-VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g-~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
.+|||+|||.|.++..|.++ ..|-+ +|+-+|-+ +-|..+-++ +. +- +..|.++ ++ . ..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~-~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE-I-KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC-C-CCCCEEeee
Confidence 57999999999999888732 11211 23333332 333332221 21 11 1223332 22 1 358888877
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
..+..+. .=....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~----~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP----PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC----HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7665441 11245789999999999999999864
No 272
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.91 E-value=0.0031 Score=62.17 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=56.4
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc--CC----CeEEEeeccCCCCCCCCCeeEEEec
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GL----PAMIGSFASKQLPYPSLSFDMLHCA 115 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~~----~~~~~~~d~~~Lpfp~~sFD~I~~~ 115 (458)
..++..|||||.|||.++..|++++. +|+++|+.+.|+....+| |. ..++..+|....++| .||.++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc--ccceeecc
Confidence 34568999999999999999999875 899999999999998888 32 345666676665554 59999986
Q ss_pred c
Q 012709 116 R 116 (458)
Q Consensus 116 ~ 116 (458)
-
T Consensus 131 l 131 (315)
T KOG0820|consen 131 L 131 (315)
T ss_pred C
Confidence 3
No 273
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.91 E-value=0.0058 Score=60.48 Aligned_cols=105 Identities=11% Similarity=0.104 Sum_probs=63.7
Q ss_pred cCCCCEEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCC--eEEEeeccCCC------------
Q 012709 42 LAGVRTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQL------------ 102 (458)
Q Consensus 42 ~~~~~~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~--~~~~~~d~~~L------------ 102 (458)
..+.+..||+||| |......++++..|..+|+-+|..+-.+..++.. ..+ ..+..+|..+.
T Consensus 66 ~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 66 EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3478899999999 4467777887777889999999999988866554 334 67888876542
Q ss_pred -CCCCCCeeEEEeccccccccc--cHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 103 -PYPSLSFDMLHCARCGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 103 -pfp~~sFD~I~~~~~l~~~~~--~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
.+ ++..=++ ...+++++.+ ++..++..+...|.||.+|+++...
T Consensus 146 lD~-~rPVavl-l~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDF-DRPVAVL-LVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --T-TS--EEE-ECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCC-CCCeeee-eeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 22 2334344 4446666654 5668999999999999999999763
No 274
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.86 E-value=0.00079 Score=65.71 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=67.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-----cccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-----LHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-----~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-+|||.+||+|=+|..+.+.-. .-.|+-.|-+ +-|.+.-+|-- .|. .+.=-|.+|.-..|||++-.+..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG---TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC---CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 5899999999999999985422 3344445544 66666666543 121 122224456556899999877777
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
-.. =+++..|=||-|+|+|||-+++=
T Consensus 130 rnv------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNV------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcC------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 655 26788999999999999988763
No 275
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.83 E-value=0.00043 Score=67.15 Aligned_cols=100 Identities=18% Similarity=0.167 Sum_probs=66.0
Q ss_pred CCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhcc-ccccccccccccCCCCCCccccccccccc
Q 012709 302 PPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 302 ~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~r-gl~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
.+|+.+++|+|+|+|.|.|++++......+ .++-.|-|..+..+-+. .+--+=||. |.++|. ||++...+++
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSG
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCC---cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhh
Confidence 458899999999999999999998654433 23334444434443331 121122332 456667 9999999999
Q ss_pred cccccCCCCCCcchhhhhhcccccCC--ceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPE--GWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~--g~~~~~ 412 (458)
..|.. -....||=-+=+.|+|| |.++|-
T Consensus 169 h~~~d----~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 169 HDWSD----EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp GGS-H----HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hhcch----HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 98842 23345888889999999 999984
No 276
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.83 E-value=0.0029 Score=63.82 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....++|.+||.|..+..+++...+..+|+|+|.++.+++.|+++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 345999999999999999998753457999999999999999876
No 277
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.81 E-value=0.0033 Score=62.86 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=80.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---c-cccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---V-GVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~-g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|+|+|||.|.++.+|...-... +|+-++-. ..+.++-+ .|+ + =+-.||.++++. ..||+|=++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~---~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA---EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 469999999999999998322211 34444443 34444333 233 1 223577776642 3799986541
Q ss_pred cccc------------ccc------CCCCC-CcchhhhhhcccccCCceEEEeccHHHHHHHHHHHh-hccce-EEEEee
Q 012709 379 LLSL------------ESG------HRHRC-STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWD-ARVIEI 437 (458)
Q Consensus 379 ~~~~------------~~~------~~~~c-~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~-~~~w~-~~~~~~ 437 (458)
=+.. +.+ +.+.- .+..++-+.-+.|+|||++++--...--+.++++.. ...|. +.+++
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~- 269 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGR- 269 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEec-
Confidence 1100 000 00000 133678888999999999999766555667777766 45674 44433
Q ss_pred ccCCCccEEEEEe
Q 012709 438 ESNSDERLLICQK 450 (458)
Q Consensus 438 ~~~~~~~~~~~~k 450 (458)
+-.+.++++++++
T Consensus 270 D~~g~~R~~~~~~ 282 (284)
T TIGR00536 270 DLNGKERVVLGFY 282 (284)
T ss_pred CCCCCceEEEEEe
Confidence 2344588988865
No 278
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.81 E-value=0.0033 Score=60.15 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----------C---CCeEEEeeccCCCCCCC--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------G---LPAMIGSFASKQLPYPS-- 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----------~---~~~~~~~~d~~~Lpfp~-- 106 (458)
.+...++|+|||.|......+-.. .....+|+|+.+...+.|.+. + .++.+..+|..+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 345799999999998776665432 122589999999877666432 2 24455566544332211
Q ss_pred -CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 107 -LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 107 -~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
..-|+|+++... +.++.-..|.++..-||+|-+++-.
T Consensus 120 ~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 WSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp GHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred hcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 346999998642 3333345678888889998887643
No 279
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.76 E-value=0.019 Score=54.93 Aligned_cols=116 Identities=12% Similarity=0.058 Sum_probs=76.9
Q ss_pred EEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCCCCCC-CeeEEEecccccc
Q 012709 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSL-SFDMLHCARCGVD 120 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lpfp~~-sFD~I~~~~~l~~ 120 (458)
|.||||-.|.+..+|++.+. ...++++|+++.-++.|+++ + -.+.+..+|... +++.+ ..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999874 56799999999999999876 3 246666666432 23333 3788887754111
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
-....|.+....++..-.|++.-.. ....+++.+...+|..+.+.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~--------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNT--------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS---------------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCC--------------ChHHHHHHHHHCCCEEEEeE
Confidence 1235666666777766778886431 24568888999999998865
No 280
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.75 E-value=0.012 Score=58.78 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=61.0
Q ss_pred CCEEEEECCCCchhHHHHh-hcCCccceEEEEcCCHHHHHHHHHc-------CCCeEEEeeccCCCCCCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La-~~~~~~~~v~gvD~S~~~i~~A~er-------~~~~~~~~~d~~~Lpfp~~sFD~I~~~~ 116 (458)
+++|+=||||.=-++..+. ++..+...|+++|+++++++.+++- +....+..+|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4699999999776655554 3333456899999999999988653 4467888888776665556899999774
Q ss_pred ccccccc-cHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~-~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+..... +-.++|..+.+.++||..+++-.
T Consensus 201 -lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 -LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp -T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred -hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 344333 33489999999999999999975
No 281
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.75 E-value=0.00076 Score=65.98 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=57.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcc----cc---ccccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|||+|||.|..+.+|.+. ..|-+ .|+-+|.. .-+..+-+| |+ +-++..-.+.++. ..||++-+..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~--~~~D~vv~~~ 133 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 133 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC--CCCCEEehhh
Confidence 46999999999998887631 12222 23333432 333333222 22 2222211122221 3488877766
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+..+. ......++-||-|+|+|||.+++.|
T Consensus 134 ~l~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665541 2334678999999999999999976
No 282
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.74 E-value=0.0019 Score=61.00 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCcccccc--chhhHHHHHHHHH-HhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhcc-CCCeEEE
Q 012709 259 GVHPEEFAE--DTENWKTAVGNFW-SLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK-GKSVWVM 334 (458)
Q Consensus 259 ~~~~~~f~~--d~~~w~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~-~~~~~~m 334 (458)
|+..+.|.. +...++..|..-. ..+. +..+ -.|+|||||.|.|+.++... ...-
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~~l~~l~--~~~~-----------------~~vlDlG~GtG~~s~~~a~~~~~~~--- 66 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRALALSKLR--LRKG-----------------DMILDIGCGTGSVTVEASLLVGETG--- 66 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHHHHHHcC--CCCc-----------------CEEEEeCCcCCHHHHHHHHHhCCCC---
Confidence 566667775 3457777775421 1111 1121 37999999999998765411 1111
Q ss_pred EeecCCCC-CCchhhhc----ccccc---c-cccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccC
Q 012709 335 NVVPTIGT-NHLPMILD----RGFVG---V-LHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 335 ~v~~~~~~-~~l~~~~~----rgl~g---~-~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp 405 (458)
.|+-++.. .-+..+-+ -|+.. + -.|..+..+.++..||.+...+ ....+..++-++-|+|+|
T Consensus 67 ~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 67 KVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKK 137 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCC
Confidence 23333332 22222211 13211 1 1233332333335688876422 123456788899999999
Q ss_pred CceEEEe-ccHHHHHHHHHHHhhccceEEEEee
Q 012709 406 EGWVIIR-DTARLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 406 ~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
||.+++. -..+.+.++...++...++..+.+.
T Consensus 138 gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 170 (198)
T PRK00377 138 GGRIVIDAILLETVNNALSALENIGFNLEITEV 170 (198)
T ss_pred CcEEEEEeecHHHHHHHHHHHHHcCCCeEEEEE
Confidence 9999983 3445567777777777776655543
No 283
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.74 E-value=0.0011 Score=63.51 Aligned_cols=88 Identities=16% Similarity=0.172 Sum_probs=50.2
Q ss_pred eEEeeccccchhhhhhhhccCCC---eEEEEeecCCCCCCchhh----hcccc---ccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~---~~~m~v~~~~~~~~l~~~----~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
..|||+|||+|.+++.|.+.-.+ |..+-..| ..+..+ -+.|+ .=+..|..+.++. ...||+|+.+
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 47999999999999988743222 33332221 222221 22343 1122344333333 2579999865
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..... +.-++-+.|+|||.+++-
T Consensus 154 ~~~~~------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGPK------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCccc------------ccHHHHHhcCcCcEEEEE
Confidence 43322 334566889999999983
No 284
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.74 E-value=0.00086 Score=63.91 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--c----cccccccccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--V----GVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~----g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
-+|+|+|||.|.++..+...... ++-++.. ..+..+-+ -|+ + +-..++.. ..|.+||+|.+
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~ 118 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTC 118 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEe
Confidence 57999999999999888732222 2222221 22222211 122 1 22222221 22578999998
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.+++... .+...+|-++-++|+|||.+++.+
T Consensus 119 ~~~l~~~------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 119 MEVLEHV------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred hhHHHhC------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 8877654 245678999999999999999864
No 285
>PRK05785 hypothetical protein; Provisional
Probab=96.73 E-value=0.001 Score=64.41 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=59.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
.+|||+|||+|-++.+|.++- . -+|+-+|-+ +-|.+.-+++ ...+.-.+.+|.=+.+||+|-+...+-..
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 579999999999999988331 2 245555654 5555554443 12233344455434799999987765433
Q ss_pred CCCCCcchhhhhhcccccCCc
Q 012709 387 RHRCSTLDIFTEIDRILRPEG 407 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g 407 (458)
-+.+..|-||-|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 356789999999999954
No 286
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.71 E-value=0.0048 Score=55.14 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCchhHHHHhh-----cCCccceEEEEcCCHHHHHHHHHcCC--------CeEEEeeccCCCCCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--------PAMIGSFASKQLPYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~-----~~~~~~~v~gvD~S~~~i~~A~er~~--------~~~~~~~d~~~Lpfp~~sF 109 (458)
.+..+|+|+|||.|.++..|+. . +..+|+++|.++..++.|.++.. ...+...+..... .....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCC
Confidence 4567999999999999999987 3 45699999999999888876621 1222222221111 13456
Q ss_pred eEEEeccccccccccHH-HHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~-~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++++.. |-..+.. .+|+-+.+ |+-.+++..|+=
T Consensus 101 ~~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 101 DILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred eEEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 666643 3343333 44554444 766666665543
No 287
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.70 E-value=0.0022 Score=60.38 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=66.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccccccccccccc--C--CCCC-Ccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEA--F--PTYP-RTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~--~--~~yp-~t~dl~h~~ 377 (458)
+.|||+|||.|.|+.+|.++.... ||+-++-. .-+..+ -..|+-.+..--|.. + ..+| .++|.++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~---~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK---NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC---CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 579999999999999998543222 33333332 222221 223331111111111 1 1134 388988754
Q ss_pred ccccccc---cCCCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhh-ccceE
Q 012709 378 GLLSLES---GHRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDA 432 (458)
Q Consensus 378 ~~~~~~~---~~~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~-~~w~~ 432 (458)
.- ..|. ..+.|+....++-++-|+|+|||.+++. |.....+.+.+.+.. -+|+.
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 21 1121 0134566678899999999999999986 555556655555443 23443
No 288
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.69 E-value=0.0014 Score=58.96 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=60.8
Q ss_pred eEEeeccccchhhhhhhhc-cCCCeEEEEeecCCCC-CCchhhhc----cccc--ccc-ccccccCCC-CCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV--GVL-HDWCEAFPT-YPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~-~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~--g~~-~~~~~~~~~-yp~t~dl~h~~ 377 (458)
-+|||+|||+|-++=.|.+ ...+.=++.| |-. .-+..+-. .|+- =.+ .|+-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999988882 2222223333 322 33333222 3442 111 22222 221 44789999999
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
+++... .....++-+|=|.|+|+|.+++.+..
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888443 34457788999999999999998766
No 289
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.69 E-value=0.01 Score=58.58 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=74.2
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---CCCeEE
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMI 94 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~~~~~~ 94 (458)
|=......+.+.+.+.. .....|||||+|+|.++..|++.+ .+++++|+++.+.+..+++ ..++.+
T Consensus 12 FL~~~~~~~~Iv~~~~~--------~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~v 80 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDL--------SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEV 80 (262)
T ss_dssp EEEHHHHHHHHHHHHTC--------GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEE
T ss_pred eeCCHHHHHHHHHhcCC--------CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhccccee
Confidence 43334555666666643 245799999999999999999876 3899999999999999885 457889
Q ss_pred EeeccCCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccC
Q 012709 95 GSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 138 (458)
Q Consensus 95 ~~~d~~~Lpfp~---~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkP 138 (458)
...|...+..+. .....|+++- ++. -...++.++...-+.
T Consensus 81 i~~D~l~~~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 81 INGDFLKWDLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp EES-TTTSCGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred eecchhccccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 999988887654 4566777663 221 223466666653344
No 290
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.68 E-value=0.001 Score=64.02 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=59.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccc--cccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGV--LHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~--~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||.|.++..|. ... .+|+-++.. +.+..+-++ |+-.. ..++.+-....+-+||+|.++.+|
T Consensus 50 ~~vLdiG~G~G~~~~~l~--~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 50 KRVLDVGCGGGILSESMA--RLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CeEEEeCCCCCHHHHHHH--HcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 359999999999999888 332 234444433 333333222 32111 122322111223689999998887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
... . +...+|-++.|+|+|||.+++..
T Consensus 125 ~~~---~---~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 125 EHV---P---DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred hcc---C---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 765 2 34578999999999999999864
No 291
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.65 E-value=0.0067 Score=57.23 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++|||+|+|+|..+...++.|. ..++..|+.+..++..+-+ +..+.+...|.. ..+..||+++.+.+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeeceec
Confidence 457999999999998888888774 3788899988777665433 445555544332 2667899999998766
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
.-+ .-.+++.-..++...|-.+++.+|..
T Consensus 154 ~~~-~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 154 NHT-EADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred Cch-HHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 544 33467774555555555566666544
No 292
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.022 Score=58.92 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=74.5
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCc-cceEEEEcCCHHHHHHHHHc----CCC-eEEEeeccCCCC--CCC-CCeeEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPS-LSFDML 112 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~-~~~v~gvD~S~~~i~~A~er----~~~-~~~~~~d~~~Lp--fp~-~sFD~I 112 (458)
..++.+|||.-++.|.=+.+++..... +..|+++|.++.-++..+++ |.. +.+...|...++ .+. +.||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 455589999999999999888876432 34569999999877665554 554 466666665543 222 359999
Q ss_pred Ee----c--ccc-------cccccc--------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 113 HC----A--RCG-------VDWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 113 ~~----~--~~l-------~~~~~~--------~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+. + .++ ..+... ..++|..+.++|||||.++.++-...
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 94 2 111 111111 12688899999999999999997553
No 293
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.64 E-value=0.0095 Score=61.55 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=39.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCC
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 101 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~ 101 (458)
+|||+-||.|.++..|++... +|+|+|+++++++.|+++ ++ ++.+..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 799999999999999998654 899999999999998876 43 57777665443
No 294
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.016 Score=58.30 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=87.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHH---HHHHHc----CC---------------------CeE---
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTLER----GL---------------------PAM--- 93 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i---~~A~er----~~---------------------~~~--- 93 (458)
.-+||-=|||.|.++..|+..|+ .+-|-+.|--|+ .++... +. ++.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 34799999999999999999886 677888888775 233311 00 000
Q ss_pred --------------EEeeccCCC-C--CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccc
Q 012709 94 --------------IGSFASKQL-P--YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 156 (458)
Q Consensus 94 --------------~~~~d~~~L-p--fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~ 156 (458)
...+|..+. + -..++||+|+..+ ++.-..+.-.+|..+..+|||||+++=.+|...+-....
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~ 306 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH 306 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCC
Confidence 000111110 0 1124799999764 454444556899999999999999999988764422111
Q ss_pred c---H-HHHHHHHHHHHHHHhhccEEEEee
Q 012709 157 N---K-ENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 157 ~---~-e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. . -.....+.+..+++..+|+.+.++
T Consensus 307 g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 307 GVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 1 1 112336888899999999999876
No 295
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.62 E-value=0.0012 Score=65.30 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=54.3
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhc----ccccc--c-cccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILD----RGFVG--V-LHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g--~-~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|..+..+... .... .|+-++.. ..+..+-+ .|+-. . ..|. +.++..+.+||+|+++.
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNC 154 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcC
Confidence 59999999998754333211 2211 12223322 33333322 22210 0 1122 22332246999999887
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
++... -+...++=|+=|+|||||.+++.|
T Consensus 155 v~~~~------~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 155 VINLS------PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cccCC------CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 76543 134578999999999999999854
No 296
>PRK04266 fibrillarin; Provisional
Probab=96.62 E-value=0.0047 Score=59.91 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=48.1
Q ss_pred EEeeccccchhhhhhhhccC--CCeEEEEeecCCCCCCch----hhhcc-ccccccccccccC--CCCCCcccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~--~~~~~m~v~~~~~~~~l~----~~~~r-gl~g~~~~~~~~~--~~yp~t~dl~h~~~~ 379 (458)
.|||+|||.|++...|.+.- ..|..+-+-| .-|. .+-+| ++.-+..|-.++. ...+.++|.|=
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~---- 146 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY---- 146 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE----
Confidence 69999999999999997321 1244332222 1111 11122 2333334443321 11234577753
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+.. ...=....+|-|+-|+|||||.++|
T Consensus 147 -~d~---~~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 147 -QDV---AQPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -ECC---CChhHHHHHHHHHHHhcCCCcEEEE
Confidence 111 0000011246699999999999999
No 297
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.61 E-value=0.0049 Score=58.84 Aligned_cols=96 Identities=23% Similarity=0.223 Sum_probs=55.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc---cccc-ccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl---~g~~-~~~~~~~~~yp~t~dl~h~~~ 378 (458)
..|+|+|||.|.++..+.+...+. -+|+-++.. +.+..+-++ ++ +-++ .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKT--GEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 469999999999988886322100 022222322 222222111 11 1111 12221 222246899998766
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
++.. ..+...+|-++-++|+|||.+++-
T Consensus 130 ~l~~------~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 130 GLRN------VPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred cccc------CCCHHHHHHHHHHhccCCcEEEEE
Confidence 5533 345678899999999999999874
No 298
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.58 E-value=0.0018 Score=65.29 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=59.8
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchh----hhccccccccccccccC--CCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAF--PTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~----~~~rgl~g~~~~~~~~~--~~yp~t~dl~h~~~~ 379 (458)
..+.|+|+|||.|.++.++..+. |-. +++-.+-+..+.. +-+.|+-+-++-.+..| ..+| .+|++-.+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 56899999999999999998432 211 2333343333333 23345533222222222 1344 3798766666
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+-.+. .-....+|-++-|.|+|||.++|-|
T Consensus 225 lh~~~----~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 225 LYSAN----EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhcCC----hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54441 1123457889999999999999864
No 299
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.53 E-value=0.0018 Score=66.51 Aligned_cols=117 Identities=14% Similarity=0.063 Sum_probs=70.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc---ccccccccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||.|.++..+.+.-.. -+|+-+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+.+.+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~---~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA---KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887632111 133334433 44444433310 112222222233334789999887777655
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH-----------------HHHHHHHHHHhhccceEE
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDAR 433 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----------------~~~~~~~~~~~~~~w~~~ 433 (458)
. +...+|-|+-|+|+|||.+++-+.. ...+++.+++++..++..
T Consensus 192 ---~---d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 192 ---P---DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred ---C---CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 2 2346899999999999999874321 023666777777777643
No 300
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.52 E-value=0.0019 Score=61.49 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=51.5
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhcccccc---cc-ccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILDRGFVG---VL-HDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~rgl~g---~~-~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
..|||+|||+|.+++.|.+. + ..|..+-+.|.-....-.-+...|+-. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 46999999999999877632 1 223333332221100001122334422 22 244443433 3689999977655
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
..+ .=|+-|.|+|||.+++-
T Consensus 153 ~~~------------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI------------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred chh------------hHHHHHhcCcCcEEEEE
Confidence 433 23667999999999984
No 301
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.49 E-value=0.0065 Score=56.01 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=46.8
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCC--CCCCC-eeEEEec
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 115 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lp--fp~~s-FD~I~~~ 115 (458)
+|+|..||.|..+..+++... +|+++|+++..++.|+.+ |+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 799999999999999999753 899999999999999887 43 6788888865431 22122 8999976
No 302
>PRK06922 hypothetical protein; Provisional
Probab=96.41 E-value=0.002 Score=70.92 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=60.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----cc-ccccccccccCCC--CCCccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT--YPRTYDLVHAEG 378 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl-~g~~~~~~~~~~~--yp~t~dl~h~~~ 378 (458)
-.+|+|+|||.|.++.+|..+-.+ .+|+-.|-+ +.+..+-+| |. +-+++.=+..++. =|.+||++..+.
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~---~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETED---KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 368999999999998887632221 133333433 333333222 11 1111111222331 147899999876
Q ss_pred ccccc----ccCC---CCCCcchhhhhhcccccCCceEEEecc
Q 012709 379 LLSLE----SGHR---HRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 379 ~~~~~----~~~~---~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
++-.+ ..+. +.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65432 0000 112456889999999999999999874
No 303
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.36 E-value=0.0059 Score=60.08 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=75.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccccccccccccCCC-CCCcccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~g~~~~~~~~~~~-yp~t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|.++-+|....... +|+-++.. ..+..+-+ -|+--+-.|+.+.++. ....||+|=++==+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~---~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGI---ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 479999999999998886321211 23333432 33333221 1321122355444321 234689887654332
Q ss_pred ccc------cC----CCCCC----------cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccC
Q 012709 382 LES------GH----RHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 440 (458)
Q Consensus 382 ~~~------~~----~~~c~----------~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~ 440 (458)
... ++ ..++. +..++-...++|+|||.+++--..+-..++..++....|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 110 00 00111 2367778889999999999865555677888888888898888876543
No 304
>PRK14967 putative methyltransferase; Provisional
Probab=96.33 E-value=0.005 Score=59.18 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=66.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
-.|+|+|||.|.++..+. .... -+|+-++-. ..+..+-+ .|+ .-+-.|+.+.++ +.+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la--~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAA--AAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHH--HcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCC
Confidence 469999999999988887 3321 023333322 33332211 233 112235555443 3589999976433
Q ss_pred ccccc--------------C-CCCCCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhccceEEEE
Q 012709 381 SLESG--------------H-RHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 381 ~~~~~--------------~-~~~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
..-.. + ...+.+..++-++-|+|+|||.+++- .+....+++.+++++-.|+....
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 21100 0 00112456777899999999999972 22223445555556556665544
No 305
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.32 E-value=0.0015 Score=61.86 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=61.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccc--cccccccccCCCCCCcccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFV--GVLHDWCEAFPTYPRTYDLVHAEGLLSLESG 385 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~--g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~ 385 (458)
=.+||+|||-|--|-.|.+++-.|-.+=..+..-.....++-++||- ....|.- .+ .+|..||+|-+..+|-.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~-~~-~~~~~yD~I~st~v~~fL-- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLN-DF-DFPEEYDFIVSTVVFMFL-- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGC-CB-S-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecch-hc-cccCCcCEEEEEEEeccC--
Confidence 37899999999999999965554433322221111223345557773 2222322 23 357899999988788765
Q ss_pred CCCCCCcchhhhhhcccccCCceEEE
Q 012709 386 HRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 386 ~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
++-.+..|+--|-.-++||||+++
T Consensus 108 --~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 108 --QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ---GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred --CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 355677889999999999999988
No 306
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.27 E-value=0.051 Score=56.73 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=74.4
Q ss_pred cccCccchhhHHHHHHHHHhhh-hcc---ccc---cCCCCEEEEECCCCchhHHHHhhc--------------CCccceE
Q 012709 14 ASLIFDGVEDYSHQIAEMIGLR-NES---NFI---LAGVRTILDIGCGYGSFGAHLFSK--------------ELLTMCI 72 (458)
Q Consensus 14 ~~~~fd~~~~~~~~l~~~l~~~-~~~---l~~---~~~~~~VLDVGCG~G~~~~~La~~--------------~~~~~~v 72 (458)
+.+.|.....+++.....+... .+. +.. .....+|+|+|||+|.++..+... ..+..++
T Consensus 26 g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv 105 (386)
T PLN02668 26 GEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSA 105 (386)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceE
Confidence 3466877766766555444211 111 111 113568999999999777655321 1234567
Q ss_pred EEEcCCHHHHHHHHH------------------cCCCeEEEee---ccCCCCCCCCCeeEEEecccccccccc-HH----
Q 012709 73 ANYEASGSQVQLTLE------------------RGLPAMIGSF---ASKQLPYPSLSFDMLHCARCGVDWDQK-DG---- 126 (458)
Q Consensus 73 ~gvD~S~~~i~~A~e------------------r~~~~~~~~~---d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~~---- 126 (458)
..-|.-.+-....-+ .+.+.-+..+ ....-=||+++.+++||+.+ +||... |.
T Consensus 106 ~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~s-lHWLS~vP~~l~d 184 (386)
T PLN02668 106 FFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFS-LHWLSQVPESVTD 184 (386)
T ss_pred EecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeecc-ceecccCchhhcc
Confidence 777755432211100 0111112211 11111288999999999987 677432 11
Q ss_pred ---------------------------------HHHHHHHhcccCCcEEEEEeCCCC
Q 012709 127 ---------------------------------ILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 127 ---------------------------------~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
.+|+-=.+-|+|||+++++.....
T Consensus 185 ~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 185 KRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred CCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCC
Confidence 233344567899999999987664
No 307
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.27 E-value=0.016 Score=61.11 Aligned_cols=139 Identities=11% Similarity=0.097 Sum_probs=80.0
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc-c-ccccccccc-CCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-V-GVLHDWCEA-FPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl-~-g~~~~~~~~-~~~yp~t~dl~h~~~~~ 380 (458)
+|+|+|||.|.++.+|..+ .+- .+|+-+|-. ..+.++-+ .|+ + =+-.|+.+. ++. ..+||+|-++-=+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999887622 121 133444432 44443322 232 1 123455443 211 2369998875433
Q ss_pred cccc------------------cCCCCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeeccCC
Q 012709 381 SLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 441 (458)
Q Consensus 381 ~~~~------------------~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 441 (458)
.... ...+... +..++-+.-+.|+|||++++--..+--+.+++++....|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 1110 0000001 22566667789999999998555556678888988888874433334455
Q ss_pred CccEEEEEec
Q 012709 442 DERLLICQKP 451 (458)
Q Consensus 442 ~~~~~~~~k~ 451 (458)
.++++++++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 5999998753
No 308
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.27 E-value=0.0059 Score=63.71 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=69.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-----CCchhhhcccccc---ccccc---cccCCCCCCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFVG---VLHDW---CEAFPTYPRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-----~~l~~~~~rgl~g---~~~~~---~~~~~~yp~t~dl~h~ 376 (458)
..++|+|||.|.|..+|..+.... |++-++-. ..+.-+-.+||-. +-.|- .+.|+ +.++|.|+.
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEE
Confidence 479999999999999998543222 33333322 1122344455411 12232 23444 368999986
Q ss_pred cccccccccCCCC-CCcchhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhc-cceE
Q 012709 377 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 432 (458)
Q Consensus 377 ~~~~~~~~~~~~~-c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~-~w~~ 432 (458)
..- ..|..+.+| =-...+|-|+=|+|+|||.+.++ |..+..+.+.+.+... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 421 234222222 11257899999999999999985 6666666655554433 5544
No 309
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.26 E-value=0.0063 Score=53.73 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=35.6
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
++||||||.|.++..+++.+ +..+++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 455899999999999887765
No 310
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.23 E-value=0.0047 Score=58.97 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=58.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 387 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~ 387 (458)
-.|-|||||-+-.|+++.+ ...|.-.-.|..+..-| +-|=. | -|+. .-+.|++= -++|+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vt---acdia-----~---vPL~--~~svDv~V--fcLSLM---- 133 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVT---ACDIA-----N---VPLE--DESVDVAV--FCLSLM---- 133 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEEESS-SSTTEE---ES-TT-----S----S----TT-EEEEE--EES-------
T ss_pred EEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEE---EecCc-----c---CcCC--CCceeEEE--EEhhhh----
Confidence 4899999999999988761 22455555555443100 00100 0 1222 25677643 445554
Q ss_pred CCCCcchhhhhhcccccCCceEEEeccHHHH---HHHHHHHhhccceEEEEee
Q 012709 388 HRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIEI 437 (458)
Q Consensus 388 ~~c~~~~~~~e~drilrp~g~~~~~d~~~~~---~~~~~~~~~~~w~~~~~~~ 437 (458)
+=+..+.+.|-.|||||||.++|-+-..-. +.--+.++++..+....|.
T Consensus 134 -GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 134 -GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred -CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 567779999999999999999996444333 3333556778888777653
No 311
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.20 E-value=0.0032 Score=60.27 Aligned_cols=89 Identities=18% Similarity=0.170 Sum_probs=47.3
Q ss_pred eEEeeccccchhhhhhhhcc-C--CCeEEEEeecCCCCCCchhhhc----cccccccccccccCCCC--CCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEK-G--KSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTY--PRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~--~~~~~m~v~~~~~~~~l~~~~~----rgl~g~~~~~~~~~~~y--p~t~dl~h~~~ 378 (458)
..|+|+|||+|.+++.|.+. . ..|..+-+.| ..+.++-+ -|+-.+---.+..+..+ ...||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 57999999999999877632 1 1333332222 22222111 12211111111122222 25799998654
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+.. +.-++-+.|+|||.+++-
T Consensus 154 ~~~~------------~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGPD------------IPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Cccc------------chHHHHHhhCCCcEEEEE
Confidence 4332 334556689999999884
No 312
>PRK04457 spermidine synthase; Provisional
Probab=96.15 E-value=0.014 Score=57.89 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=72.7
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCC-CCCchhhhcc-ccc------cc-cccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDR-GFV------GV-LHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~-~~~l~~~~~r-gl~------g~-~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-++|+|+|||.|+++..|... .|- +.|+-++- +..+.++-+. ++. -+ ..|--+-+...|.+||+|=.+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 478999999999999888632 121 12222332 2333333222 111 11 122222233446789999655
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEE---eccHHHHHHHHHHHhhccceEEEEeeccCCCccEEEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.|+.... ........++-++=++|+|||.+++ ......-..++.+.+...-.+.+...+..+ .-++++.|
T Consensus 144 -~~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~-N~v~~a~~ 216 (262)
T PRK04457 144 -GFDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHG-NVAVFAFK 216 (262)
T ss_pred -CCCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCc-cEEEEEEC
Confidence 2332100 1112245788899999999999997 233223333444444443334444433222 56788876
No 313
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.12 E-value=0.027 Score=56.48 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=73.1
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCC-C-CCCCCeeEEEe
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YPSLSFDMLHC 114 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~L-p-fp~~sFD~I~~ 114 (458)
..+..+|||+.++.|.-+.+++..-.....+++.|+++.-+...+++ |. .+.....|.... + .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34556899999999999988887654456899999999877766544 54 444554565544 1 23346999995
Q ss_pred ----cccccccccc------------------HHHHHHHHHhcc----cCCcEEEEEeCC
Q 012709 115 ----ARCGVDWDQK------------------DGILLLEVDRVL----KPGGYFVWTSPL 148 (458)
Q Consensus 115 ----~~~l~~~~~~------------------~~~~L~ei~RvL----kPGG~liis~~~ 148 (458)
+.. -.+..+ ..++|+.+.+.+ ||||+++.++-.
T Consensus 163 DaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 321 111111 125888999999 999999999873
No 314
>PRK06202 hypothetical protein; Provisional
Probab=96.10 E-value=0.0039 Score=60.13 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=61.2
Q ss_pred eeEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhhhcccc---ccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|+|+|||.|.++..|.+. .+.-...+|+-+|-. +.+..+.++.- +-....=++.++.-+.+||+|-++.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 468999999999998887521 010112356666654 55555544421 1111111233444457999999998887
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
.. .+. .+..+|-||-|++| |.+++.|
T Consensus 141 h~---~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HL---DDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cC---ChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 66 221 24568999999999 5555544
No 315
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.10 E-value=0.0089 Score=60.62 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=65.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||.|.++.+|... .|- .+|+-++-. ..+.++-+ .|+ |- +-.|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999743 222 234445543 44443322 343 22 2235545443 35899998762
Q ss_pred cccc------------cccCC------CCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhc
Q 012709 379 LLSL------------ESGHR------HRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 428 (458)
Q Consensus 379 ~~~~------------~~~~~------~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~ 428 (458)
=+.. +.+.. +... +..++-+.-+.|+|||.+++--... ..++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 1111 00000 0011 2367888999999999999853332 34566666543
No 316
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.04 E-value=0.002 Score=54.30 Aligned_cols=96 Identities=17% Similarity=0.048 Sum_probs=39.9
Q ss_pred EEECCCCchhHHHHhhcCCcc--ceEEEEcCCH---HHHHHHHHcC--CCeEEEeeccCCC--CCCCCCeeEEEeccccc
Q 012709 49 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERG--LPAMIGSFASKQL--PYPSLSFDMLHCARCGV 119 (458)
Q Consensus 49 LDVGCG~G~~~~~La~~~~~~--~~v~gvD~S~---~~i~~A~er~--~~~~~~~~d~~~L--pfp~~sFD~I~~~~~l~ 119 (458)
||||+..|..+..+++.-.+. .+++++|..+ ..-+..++.+ .++.+..++.... .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 689999998888887642222 2689999998 3444444332 3577777765432 23357899999753 2
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
|-.......+..+.+.|+|||.+++-+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222234467889999999999998743
No 317
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.04 E-value=0.024 Score=53.28 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=68.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+.|+|+|+|.++...+... -+|++++.++.-.+.|.++ ..++.+..+|+....| ...|+|+|-.. -.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEml-DT 107 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEML-DT 107 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHh-hH
Confidence 589999999999998877653 3899999999999999887 2378889999888888 45799998521 11
Q ss_pred -c-cccHHHHHHHHHhcccCCcEEEE
Q 012709 121 -W-DQKDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 121 -~-~~~~~~~L~ei~RvLkPGG~lii 144 (458)
. ....-.++..+...||-.+.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 1 11112566777777887777654
No 318
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.03 E-value=0.0052 Score=49.04 Aligned_cols=95 Identities=22% Similarity=0.234 Sum_probs=54.9
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh---cccc---cccc-ccccccCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~---~rgl---~g~~-~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+|+|+|||.|+++..+. ..+. .++.-.+.. +.+..+- +.+. +-.+ .|+.+.-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~--~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALA--SGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHh--cCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 48999999999999998 3221 122222322 1111111 1111 1112 22222211235689999988887
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
... .=....++-.+.+.|||||++++.
T Consensus 77 ~~~-----~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHL-----VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeh-----hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 652 113456778889999999999986
No 319
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.03 E-value=0.0045 Score=63.73 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=56.8
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccccccccCCCCCCccccccccccccc-
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL- 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~- 382 (458)
.|+|+|||.|.++++|..+....- |+-+|.. .-|..+ -+.|+-+.++ +...++.-+.+||+|-++--|-.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~---v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIR---LTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 599999999999999984322221 2222321 111111 1123322221 22233434678999998776632
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.. ...-....++-++-|.|+|||.++|-
T Consensus 275 ~~--~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 275 IQ--TSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cc--ccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 10 11123457889999999999999874
No 320
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.98 E-value=0.015 Score=58.33 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=69.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---cc-ccccccccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g-~~~~~~~~~~~yp~t~dl~h~~~ 378 (458)
.+|+|+|||+|.++.+|..+.... +|+-++-. ..+.++-+ .|+ |- +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~---~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA---EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 479999999999999998432222 34444443 34443322 244 21 2234444443 24799988652
Q ss_pred cccc------c----c--------cCCCCCC-cchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEE
Q 012709 379 LLSL------E----S--------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI 435 (458)
Q Consensus 379 ~~~~------~----~--------~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~ 435 (458)
=+.. . + .+.+... +..++-+.-+.|+|||++++.-.... ++++++.....|.-...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEF 272 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeee
Confidence 1110 0 0 0000111 24678888999999999998544433 67888877665544333
No 321
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.082 Score=54.88 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=89.0
Q ss_pred cccccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCC---c--------------------
Q 012709 12 RSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL---L-------------------- 68 (458)
Q Consensus 12 ~~~~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~---~-------------------- 68 (458)
.++-..+++.+..-+.++..+..+.+ ......++|==||+|.+....+-.+. |
T Consensus 163 kRGyR~~~g~ApLketLAaAil~lag----w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~ 238 (381)
T COG0116 163 KRGYRVYDGPAPLKETLAAAILLLAG----WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD 238 (381)
T ss_pred hccccccCCCCCchHHHHHHHHHHcC----CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence 33445566667777777776665433 22336899999999999888765431 0
Q ss_pred --------cc-------eEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCCCCCeeEEEecccc---cccccc
Q 012709 69 --------TM-------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG---VDWDQK 124 (458)
Q Consensus 69 --------~~-------~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp~~sFD~I~~~~~l---~~~~~~ 124 (458)
.. .++|+|+++.+++.|+.+ |+ .+.|.++|+..++-+-+.+|+|+|+--. +.-...
T Consensus 239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~ 318 (381)
T COG0116 239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEAL 318 (381)
T ss_pred HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhh
Confidence 01 277999999999999887 44 4788999998886444789999998321 110111
Q ss_pred HH----HHHHHHHhcccCCcEEEEEeC
Q 012709 125 DG----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 125 ~~----~~L~ei~RvLkPGG~liis~~ 147 (458)
.+ .+.+.+.+.++--+++++++.
T Consensus 319 v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 319 VAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 12 344456677777788888875
No 322
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.024 Score=56.75 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=80.9
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccc---ccccccccccCCCCCCccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~ 380 (458)
+|+|||||+|.-|.+|..... . .+|+-+|-+ .-|.++ -.-|+ .-+..||=++. +.+||+|=++==.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-D--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-C--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCC
Confidence 999999999999999984322 2 355555543 444443 22343 23333554444 4488886433111
Q ss_pred -------------------cccccCCCCCCcc---hhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEeec
Q 012709 381 -------------------SLESGHRHRCSTL---DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 438 (458)
Q Consensus 381 -------------------~~~~~~~~~c~~~---~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~~ 438 (458)
..+ ....+++ .++-+..++|+|||++++.-...--+.|+++.....+-..+....
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~---~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~ 263 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALV---GGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLK 263 (280)
T ss_pred CCCcccccChhhhccCHHHHHc---cCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEe
Confidence 011 1123332 778889999999999999877777889999999888521122222
Q ss_pred c-CCCccEEEEEe
Q 012709 439 S-NSDERLLICQK 450 (458)
Q Consensus 439 ~-~~~~~~~~~~k 450 (458)
+ .+.+++.++++
T Consensus 264 d~~g~~rv~~~~~ 276 (280)
T COG2890 264 DLFGRDRVVLAKL 276 (280)
T ss_pred cCCCceEEEEEEe
Confidence 2 33466666554
No 323
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.82 E-value=0.014 Score=57.28 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=69.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccCCC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRH 388 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~ 388 (458)
.|-|||||-+-.|..- ..+|-.|-+|+++..-+.-=|-. .|-=.+|-|++ -.++|+.
T Consensus 183 vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm~~-------------vPl~d~svDva--V~CLSLM----- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDMRN-------------VPLEDESVDVA--VFCLSLM----- 239 (325)
T ss_pred EEEecccchhhhhhcc---ccceeeeeeecCCCceeeccccC-------------CcCccCcccEE--EeeHhhh-----
Confidence 6899999999887632 46788888888776422111100 12223677764 3556655
Q ss_pred CCCcchhhhhhcccccCCceEEEeccHHHHHHHHHH---HhhccceEEEEe
Q 012709 389 RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARAL---TTRLKWDARVIE 436 (458)
Q Consensus 389 ~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~---~~~~~w~~~~~~ 436 (458)
.-++.+.+.|..|||+|||.++|-+-..-...++.+ ++.|..++...+
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 667889999999999999999996544443333333 566777766554
No 324
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.32 Score=46.40 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=93.0
Q ss_pred CccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHH----HHHHHHcCCCe
Q 012709 17 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPA 92 (458)
Q Consensus 17 ~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~----i~~A~er~~~~ 92 (458)
.|...+.+-..++..+......++ -.+..+||=+|+.+|....+++.-- ....+.+++.|+.+ +..|.+|. ++
T Consensus 50 eYR~Wnp~RSKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni 126 (231)
T COG1889 50 EYREWNPRRSKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NI 126 (231)
T ss_pred ceeeeCcchhHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cc
Confidence 444445555666666654443333 3345799999999999999998753 35679999999865 45566653 33
Q ss_pred EEEeeccCCCC---CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHH
Q 012709 93 MIGSFASKQLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 169 (458)
Q Consensus 93 ~~~~~d~~~Lp---fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~ 169 (458)
.-...|+.... .-=+..|+|++- + .-++..+.+..++...||+||+++++-....-.. +.+-.+.+++-.+
T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~D-V--AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv---T~dp~~vf~~ev~ 200 (231)
T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQD-V--AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDV---TADPEEVFKDEVE 200 (231)
T ss_pred eeeecccCCcHHhhhhcccccEEEEe-c--CCchHHHHHHHHHHHhcccCCeEEEEEEeecccc---cCCHHHHHHHHHH
Confidence 33334433210 111468999865 2 1222234677889999999998888765332211 1222333443334
Q ss_pred HHHhhccEEEEee
Q 012709 170 FVENLCWELVSQQ 182 (458)
Q Consensus 170 l~~~~~w~~v~~~ 182 (458)
-+...+|+.+.+-
T Consensus 201 kL~~~~f~i~e~~ 213 (231)
T COG1889 201 KLEEGGFEILEVV 213 (231)
T ss_pred HHHhcCceeeEEe
Confidence 4455567666543
No 325
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.73 E-value=0.1 Score=49.31 Aligned_cols=141 Identities=16% Similarity=0.049 Sum_probs=79.5
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHH----------HHHHHHHcC-CCeEEEeeccCCCC------
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERG-LPAMIGSFASKQLP------ 103 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~----------~i~~A~er~-~~~~~~~~d~~~Lp------ 103 (458)
......+|+|+=-|.|.+++-++..-.+...|++.=..+. +-..+++.. .+..........++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 3445679999999999999999876445556666544332 112222221 12222222222232
Q ss_pred -CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHH--HHHHHHHHHHHhhccEEEE
Q 012709 104 -YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ--KRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 104 -fp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~--~~w~~i~~l~~~~~w~~v~ 180 (458)
.+..++|.++.+.. +| ...-.++..++++.|||||.+++.++....-....+.... ..-..+.+..+..+|++..
T Consensus 125 ~~~~~~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 125 LVPTAQNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred ccccchhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 12234444443332 33 3344589999999999999999999765432222221111 1124456667778888877
Q ss_pred eee
Q 012709 181 QQD 183 (458)
Q Consensus 181 ~~~ 183 (458)
+..
T Consensus 203 eS~ 205 (238)
T COG4798 203 ESE 205 (238)
T ss_pred eeh
Confidence 654
No 326
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.73 E-value=0.024 Score=52.42 Aligned_cols=139 Identities=22% Similarity=0.332 Sum_probs=66.8
Q ss_pred ceeEEeeccccchhhhhhhhccC---CCeEEEEeecCCCCCCchhhhccccc---cccccccccCCCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~---~~~~~m~v~~~~~~~~l~~~~~rgl~---g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
+-.+|+|+||+.|||..+++++. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-++..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~ 100 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLSDMA 100 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE---
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceeccccc
Confidence 56999999999999999999544 22444444444322222222 2211 1111222222211257999998885
Q ss_pred ccccccCCCCCC--cchhh---hhhcccccCCceEEEe-----ccHHHHHHHHHHHhhccceEEEEeecc---CCCccEE
Q 012709 380 LSLESGHRHRCS--TLDIF---TEIDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDERLL 446 (458)
Q Consensus 380 ~~~~~~~~~~c~--~~~~~---~e~drilrp~g~~~~~-----d~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~~ 446 (458)
+..-........ +..++ .=+-..|+|||.+|+. +..+++..++..-+ ++.+++... .+.|.-+
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~----~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFS----KVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHH----HEEEEE-TTSBTTCBEEEE
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCe----EEEEEECcCCCCCccEEEE
Confidence 543200000011 11112 2223559999988873 22355555555333 355665543 3358888
Q ss_pred EEEe
Q 012709 447 ICQK 450 (458)
Q Consensus 447 ~~~k 450 (458)
||.+
T Consensus 177 v~~~ 180 (181)
T PF01728_consen 177 VCRG 180 (181)
T ss_dssp ESEE
T ss_pred EEcC
Confidence 8864
No 327
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.69 E-value=0.0098 Score=50.56 Aligned_cols=91 Identities=20% Similarity=0.145 Sum_probs=51.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccc--ccc-cc--ccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GVL-HD--WCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~--g~~-~~--~~~~~~~yp~t~dl~h~~ 377 (458)
.+|+|+|||.|.++..+..+.... +|+-+|-. ..+..+ -..|+- -+. .| ++.+ .-+.+||.+=..
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNG---RVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCc---eEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 489999999999999997432222 33333432 222221 112221 111 11 2222 223578887543
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+..+ .+..++=++-|.|+|||++++.
T Consensus 96 ~~~~---------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGG---------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccch---------hHHHHHHHHHHHcCCCCEEEEE
Confidence 3222 2346888999999999999974
No 328
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.66 E-value=0.0074 Score=58.63 Aligned_cols=112 Identities=16% Similarity=0.090 Sum_probs=74.3
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccc--------cCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCE--------AFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~--------~~~~yp~t~dl~h~~ 377 (458)
=|.+.|.|||.| +||..++.- -=+|+-+|-. .+|.++ .-+.--+||.=-. ++..=+.+-|||-|.
T Consensus 34 h~~a~DvG~G~G-qa~~~iae~----~k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 34 HRLAWDVGTGNG-QAARGIAEH----YKEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred cceEEEeccCCC-cchHHHHHh----hhhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 379999999999 777765421 1167777776 777743 3344444444333 333336788887754
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCc-eEE---EeccHHHHHHHHHHHhhccce
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 431 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g-~~~---~~d~~~~~~~~~~~~~~~~w~ 431 (458)
.+| |=|+++..+=++-|+|||.| .+. .+|+.-..-++.++..+++|+
T Consensus 108 qa~-------HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAV-------HWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhH-------HhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 443 24788899999999999999 322 265555566777777777775
No 329
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.57 E-value=0.0088 Score=59.75 Aligned_cols=94 Identities=22% Similarity=0.379 Sum_probs=69.4
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch----hhhccccc----cccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP----MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~----~~~~rgl~----g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
=+|||+|||-|+++-.+.++ ..|=|..|.-.. +++. -|-++||- =..+||-..=. .||=|=+-|.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~-y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrIvSvgm 146 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEE-YGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRIVSVGM 146 (283)
T ss_pred CEEEEeCCChhHHHHHHHHH-cCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----ccceeeehhh
Confidence 47999999999999888742 367666554443 4443 37779996 44677765433 3888888888
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
|.... .-+..+.+-=+.++|+|||-+++.
T Consensus 147 fEhvg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 147 FEHVG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred HHHhC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 88762 456778888899999999999973
No 330
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.50 E-value=0.012 Score=56.26 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=58.0
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----ccccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----gl~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|||+|||.|.|+.+|..... .|+-++.. +-+..+-++ |+-..++-....++.-+.+||+|.+..+|.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 36899999999999999983322 23333432 333433322 221111111222444457899999888886
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
.+. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 551 23456777788888766666555443
No 331
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=95.49 E-value=0.011 Score=56.26 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCC--Cccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYP--RTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp--~t~dl~h~~~ 378 (458)
-.|||+|||+|.+++.|.+... .|+-++.. +-+..+-+ -|+ +-+.+. ..+.++| .+||+|..+.
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~ 152 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTA 152 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEcc
Confidence 4799999999999987763322 23323322 22222221 133 111111 1122232 5799998665
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.+..+ .-++-+.|+|||.+++-
T Consensus 153 ~~~~~------------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 153 AAPEI------------PRALLEQLKEGGILVAP 174 (212)
T ss_pred Cchhh------------hHHHHHhcCCCcEEEEE
Confidence 44332 33456899999999874
No 332
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.49 E-value=0.095 Score=53.89 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=73.9
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------------CCCeEEEeeccCCC-CCCCCCe
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQL-PYPSLSF 109 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------------~~~~~~~~~d~~~L-pfp~~sF 109 (458)
.+.++||=+|-|.|.-.+.|.+.- ...+|+-+|..+.|++.+++. ..++.+...|+.+. .-..+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 456799999999999999999752 257999999999999999844 23455555554332 2234589
Q ss_pred eEEEeccccccccccH-----HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~-----~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+|+.-.- -+-+... .++..-+.|.|+++|.+++....+
T Consensus 367 D~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 99985421 1111111 246677889999999999987644
No 333
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=95.48 E-value=0.0085 Score=56.22 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=51.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCC-CCccccccccccccccccC
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~y-p~t~dl~h~~~~~~~~~~~ 386 (458)
+|+|+|||.|.++.+|.+. ..+ +++-++.. ..+..+.++|+--+..|..+.++.+ +.+||+|-+++.|...
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~--- 88 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT--- 88 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC---
Confidence 6999999999999998732 222 12222322 3344444566432333433323323 4699999998888655
Q ss_pred CCCCCcchhhhhhcccccC
Q 012709 387 RHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp 405 (458)
. +...+|-||-|++++
T Consensus 89 ~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 89 R---NPEEILDEMLRVGRH 104 (194)
T ss_pred c---CHHHHHHHHHHhCCe
Confidence 2 245567777666554
No 334
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.48 E-value=0.0038 Score=60.18 Aligned_cols=135 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccc-cccccccccCC--CCCCcccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFV-GVLHDWCEAFP--TYPRTYDLVHAEGLLS 381 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~-g~~~~~~~~~~--~yp~t~dl~h~~~~~~ 381 (458)
.+|.++|.|||+|=++-+|..+-+ -+.=++-+ |-|-.+.|+|+- -.||-=-..|. .-+.-+|||-|..+|+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~-----~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~ 199 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMAD-----RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLP 199 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHh-----hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHH
Confidence 589999999999999999973311 12233434 888899999972 22222122254 5578999999999998
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEe-e----ccC
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIE-I----ESN 440 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~-~----~~~ 440 (458)
-+ -.++.++.=..+.|.|||.|+++-+. .--..|..++.+---++..+. + +.+
T Consensus 200 Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g 273 (287)
T COG4976 200 YL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAG 273 (287)
T ss_pred hh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcC
Confidence 66 46788999999999999999985111 012456677666666644432 1 112
Q ss_pred C--CccEEEEEec
Q 012709 441 S--DERLLICQKP 451 (458)
Q Consensus 441 ~--~~~~~~~~k~ 451 (458)
. ...+.|++|+
T Consensus 274 ~pv~G~L~iark~ 286 (287)
T COG4976 274 EPVPGILVIARKK 286 (287)
T ss_pred CCCCCceEEEecC
Confidence 2 2556666664
No 335
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.41 E-value=0.076 Score=52.09 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=73.2
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCCeEEEeeccCCCCCCCCCeeEEEecccc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l 118 (458)
+.+.+|+|||||.=-++....... +...++|+|++..++++...- +.+......|...-+ +....|+.+..-+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~- 180 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT- 180 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--
T ss_pred CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-
Confidence 346899999999999998887653 456999999999999876544 667777777655543 4467999997654
Q ss_pred ccccccH-HHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHH-HHHHHHHHHhhccEEEE
Q 012709 119 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR-WNFVRDFVENLCWELVS 180 (458)
Q Consensus 119 ~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~-w~~i~~l~~~~~w~~v~ 180 (458)
++..+.. ...-.++...++ .=.+++|.|-..- +. +..-..+. -..++.++..-+|..-.
T Consensus 181 lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL-~g-R~~gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 181 LPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL-GG-RNKGMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------TTHHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHHhcchHHHHHHHhC-CCeEEEecccccc-cc-CccccccCHHHHHHHhcccCCceeee
Confidence 3322111 112122222222 1245556553321 11 11222222 35678888888887443
No 336
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.36 E-value=0.13 Score=46.23 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=60.6
Q ss_pred eEEEEcCCHHHHHHHHHc----C--CCeEEEeeccCCCC--CCCCCeeEEEecccccccc-----ccHH---HHHHHHHh
Q 012709 71 CIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDWD-----QKDG---ILLLEVDR 134 (458)
Q Consensus 71 ~v~gvD~S~~~i~~A~er----~--~~~~~~~~d~~~Lp--fp~~sFD~I~~~~~l~~~~-----~~~~---~~L~ei~R 134 (458)
+|.+.|+.+++++.++++ + .++.+...+-+.+. .+.+.+|+|+-+...++-. ..+. .+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 488999999999988877 2 25777776655553 2335899999885544422 1222 68899999
Q ss_pred cccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhh
Q 012709 135 VLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 174 (458)
Q Consensus 135 vLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~ 174 (458)
+|+|||.+.++..... +...+..+.+.+.++.+
T Consensus 81 lL~~gG~i~iv~Y~GH-------~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGH-------PGGKEESEAVEEFLASL 113 (140)
T ss_dssp HEEEEEEEEEEE--ST-------CHHHHHHHHHHHHHHTS
T ss_pred hhccCCEEEEEEeCCC-------CCCHHHHHHHHHHHHhC
Confidence 9999999999886332 22334445566665543
No 337
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.36 E-value=0.016 Score=54.92 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=71.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhccccccccccccccCCC-----CCCccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPT-----YPRTYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl~g~~~~~~~~~~~-----yp~t~dl~h~~~~~ 380 (458)
..++|+|||.|.|..++..+..+.-.+-|=+.... ..+.-+..+||-.+.--.|.+... -|.+.|.||. .|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i--~F 96 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI--NF 96 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE--ES
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE--eC
Confidence 38999999999999999765555443333322221 344456667773333333333220 1457777662 22
Q ss_pred c-ccccC--CCCCCcc-hhhhhhcccccCCceEEEe-ccHHHHHHHHHHHhhc--cceEE
Q 012709 381 S-LESGH--RHRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 433 (458)
Q Consensus 381 ~-~~~~~--~~~c~~~-~~~~e~drilrp~g~~~~~-d~~~~~~~~~~~~~~~--~w~~~ 433 (458)
. .|-.+ .+|.-+. ..|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 2 22111 1244443 7788999999999999985 6777777777777775 44433
No 338
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.028 Score=59.92 Aligned_cols=69 Identities=26% Similarity=0.313 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEE
Q 012709 21 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIG 95 (458)
Q Consensus 21 ~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~ 95 (458)
++.++..+.+.... .....+||+-||||.++..+++.. .+|+|++++++.++.|+++ |+ ++.|+
T Consensus 368 aevLys~i~e~~~l--------~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi 436 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGL--------PADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGISNATFI 436 (534)
T ss_pred HHHHHHHHHHHhCC--------CCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCccceeee
Confidence 35555555555543 333689999999999999998853 3899999999999999876 33 56777
Q ss_pred eeccC
Q 012709 96 SFASK 100 (458)
Q Consensus 96 ~~d~~ 100 (458)
++-++
T Consensus 437 ~gqaE 441 (534)
T KOG2187|consen 437 VGQAE 441 (534)
T ss_pred ecchh
Confidence 76433
No 339
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.33 E-value=0.063 Score=51.08 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
-.+.|||||.|.+...|+.. +|..-+.|.++-...-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 36899999999999999986 477789999986654444433
No 340
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.31 E-value=0.014 Score=55.66 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=61.3
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccccccccccCCCCCCcccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 381 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~~~~yp~t~dl~h~~~~~~ 381 (458)
-.+|+|+|||.|.|+..|. +... .|+-+|.. +.+..+.+|. +..-..=.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la--~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELA--KRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHH--HCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 3689999999999999998 4432 33444433 4555544432 10000111122222347899987777665
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+ ....+..++-++.|+++|++++.+....
T Consensus 131 ~~----~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 131 HY----PASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred hC----CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 44 1344667899999999998888875443
No 341
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.29 E-value=0.011 Score=56.21 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=59.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-ccc-cccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGV-LHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~-~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
-..|||+|||.|.+..+|.+.-... +++-++-. +.+..+-++-- +.+ -.|..++|+ +.+||+|-+.+++.++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~---~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFK---HIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 3579999999999999997320111 34444433 44444433210 111 223334454 4799999999999876
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
. .-.+..++-||-|++ +++++|-
T Consensus 119 ---~-p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 ---N-PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---C-HHHHHHHHHHHHhhc--CcEEEEE
Confidence 2 235667889999998 5677773
No 342
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.25 E-value=0.1 Score=53.61 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=70.0
Q ss_pred cCCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccc
Q 012709 42 LAGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 42 ~~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~ 120 (458)
..+.++|+=+|+| .|..+..+++.- ..+|+++|.+++-.+.|++-|....+...+.....--.+.||+|+..-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv---- 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV---- 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC----
Confidence 3456788888888 447777777732 259999999999999999988765555333333222123499999652
Q ss_pred ccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 121 WDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 121 ~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. ...+....+.||+||.+++...+
T Consensus 238 ---~-~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 ---G-PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---C-hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 34688899999999999999875
No 343
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.25 E-value=0.014 Score=53.70 Aligned_cols=119 Identities=22% Similarity=0.260 Sum_probs=65.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----ccc---ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
.+|+|+|||+|-.+.+|..+... .. |+-+|-. +-+..+.+ -|+ --+.+|+.++++ +..||+|=++-=
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~~~-~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRGPD-AK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTSTC-EE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CeEEEecCChHHHHHHHHHhCCC-CE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 67999999999999888754333 22 2222322 33332221 222 234567777666 589999875543
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEE--EeccHHHHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~--~~d~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
|..-.. .....+..++-+-=++|+|||.++ ++.....-..++++.. ++.+..
T Consensus 108 ~~~~~~-~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~----~~~~~~ 161 (170)
T PF05175_consen 108 FHAGGD-DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG----DVEVVA 161 (170)
T ss_dssp SBTTSH-CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS------EEEE
T ss_pred hhcccc-cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC----CEEEEE
Confidence 221100 011235678889999999999874 4444433333444333 555543
No 344
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.14 E-value=0.12 Score=52.23 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---C--C--CeEE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--L--PAMI 94 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---~--~--~~~~ 94 (458)
..|++-+++.+...... ....-++||||+|....-..|..+- ..++++|+|+++..++.|+++ + + .+.+
T Consensus 83 ~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l 158 (299)
T PF05971_consen 83 LNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIEL 158 (299)
T ss_dssp HHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEE
T ss_pred HHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEE
Confidence 45666666666543221 1124589999999887666665442 256999999999999999875 2 2 3444
Q ss_pred EeeccC-C----CCCCCCCeeEEEecccccc
Q 012709 95 GSFASK-Q----LPYPSLSFDMLHCARCGVD 120 (458)
Q Consensus 95 ~~~d~~-~----Lpfp~~sFD~I~~~~~l~~ 120 (458)
...... . +-.+++.||+..|+--++.
T Consensus 159 ~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 159 RKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEcCCccccchhhhcccceeeEEecCCcccc
Confidence 433211 1 1223468999999865444
No 345
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.12 E-value=0.029 Score=56.62 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=62.3
Q ss_pred eEEeeccccchhh--hhhhhccCC-CeEEEEeecCCCCCCchhhhccccccccc-cccccCCCCCCcccccccccccccc
Q 012709 308 RNVLDMNAHFGGF--NSALLEKGK-SVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 308 r~~~d~~~~~g~f--aa~l~~~~~-~~~~m~v~~~~~~~~l~~~~~rgl~g~~~-~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..|||+|||+|-. ||+++ +- .|.-.-+=|..-.++..-+-.-|+-.-+. .-.+.+.. ..||+|=|+=+...+
T Consensus 163 ~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVL 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHH
T ss_pred CEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHH
Confidence 5999999999954 56665 33 34333222211111111122223311110 01233333 689999876665544
Q ss_pred ccCCCCCCcchhhhhhcccccCCceEEEeccH-HHHHHHHHHHhhccceEEEEeeccCCCccEEEEEec
Q 012709 384 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 384 ~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
..++=++.+.|+|||++|++--. +-.+.|.+..+. .|++.-...+ ++=-.|+++|+
T Consensus 239 ---------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~Kk 295 (295)
T PF06325_consen 239 ---------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE--GEWVALVFKKK 295 (295)
T ss_dssp ---------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEEE-
T ss_pred ---------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEEeC
Confidence 23566789999999999985211 112444555555 6665444322 11234555553
No 346
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.92 E-value=0.043 Score=51.51 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=28.1
Q ss_pred CcchhhhhhcccccCCceEEEecc-HHHHHHHHHHHhhcc
Q 012709 391 STLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 429 (458)
Q Consensus 391 ~~~~~~~e~drilrp~g~~~~~d~-~~~~~~~~~~~~~~~ 429 (458)
.+..++-++-|+|+|||++++-.. .+.+.++.+..+.+.
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 467889999999999999998643 334455555565553
No 347
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.25 Score=50.66 Aligned_cols=106 Identities=17% Similarity=0.117 Sum_probs=62.8
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCcc-ceEEEEcCCHHHHHHHHH--cCCCe-----EEEeeccCCCCCCC-CCeeEEE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLT-MCIANYEASGSQVQLTLE--RGLPA-----MIGSFASKQLPYPS-LSFDMLH 113 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~-~~v~gvD~S~~~i~~A~e--r~~~~-----~~~~~d~~~Lpfp~-~sFD~I~ 113 (458)
-.+++|||+|.|.|.-...+-.- +|. -+++-++.|+..-..... .++.. .-.......++++. ..|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i-~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDI-WPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhccc-CCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhh
Confidence 45678999999999766555432 333 345667777765443321 11111 11111123444432 5688887
Q ss_pred ecccccccccc--HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 114 CARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 114 ~~~~l~~~~~~--~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
...-+.+.... ..-.++.+..++.|||.|++.+++.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 76555554321 1247888899999999999999744
No 348
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.73 E-value=0.46 Score=46.47 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=84.8
Q ss_pred ccCccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCH----HHHHHHHHcCC
Q 012709 15 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGL 90 (458)
Q Consensus 15 ~~~fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~----~~i~~A~er~~ 90 (458)
...|.....+...++.-+.-..+.+.... ..+||=+|+++|....+..+---+...|++++.|+ +.+..|.+|-
T Consensus 128 kvEyRVWnPfrSKLAA~I~gGvdnihikp-GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt- 205 (317)
T KOG1596|consen 128 KVEYRVWNPFRSKLAAGILGGVDNIHIKP-GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT- 205 (317)
T ss_pred cEEEEEeChHHHHHHHHhhcCccceeecC-CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-
Confidence 34465567777777777765555554433 35999999999999988887655677899999886 4567777663
Q ss_pred CeEEEeeccCCC---CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 91 PAMIGSFASKQL---PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 91 ~~~~~~~d~~~L---pfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
++.-+.-|+... -+.-.-.|+|++- + .-++....+..++.-.||+||.|+++....
T Consensus 206 NiiPIiEDArhP~KYRmlVgmVDvIFaD-v--aqpdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYRMLVGMVDVIFAD-V--AQPDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred CceeeeccCCCchheeeeeeeEEEEecc-C--CCchhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 333333333221 0112357887754 2 112222356668889999999999987544
No 349
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=94.65 E-value=0.41 Score=45.16 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=61.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEee-ccCC--------CCCCCCCeeEE
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF-ASKQ--------LPYPSLSFDML 112 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~-d~~~--------Lpfp~~sFD~I 112 (458)
-.+..+|||+||.+|+++....++.-|..-+.|+|+-.- .--.| +.+..+ |..+ ..+|+...|+|
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvV 140 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----EPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVV 140 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----cCCCC--cccccccccCCHHHHHHHHHhCCCCcccEE
Confidence 344679999999999999999887657778999997431 11112 122222 2221 12467889999
Q ss_pred Eeccccccccc----cHH-------HHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQ----KDG-------ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~----~~~-------~~L~ei~RvLkPGG~liis~~ 147 (458)
++-. ...-+. |.. .+|.-....++|+|.|++-.+
T Consensus 141 lSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 141 LSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred Eecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 9742 232211 111 234444567889999999875
No 350
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.63 E-value=0.026 Score=56.91 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=59.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcc------cc--ccccccccccCCCCCCcc----c-c
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF--VGVLHDWCEAFPTYPRTY----D-L 373 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r------gl--~g~~~~~~~~~~~yp~t~----d-l 373 (458)
.+|+|+|||.|.++..|++.-.. .-+|++.|-+ .-|..+.++ ++ .++..|.++.++ +|..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCeEE
Confidence 57999999999999988843111 2367888876 566655543 22 344556665432 23333 2 3
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+...+.|... ..-....+|=++=+.|+|||.+++
T Consensus 142 ~~~gs~~~~~----~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNF----TPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEecccccCC----CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3333333332 122344689999999999999997
No 351
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=94.31 E-value=0.004 Score=51.87 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=53.4
Q ss_pred EeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----c-ccccccccccCCCCCCcccccccccc-ccc
Q 012709 310 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGL-LSL 382 (458)
Q Consensus 310 ~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l-~g~~~~~~~~~~~yp~t~dl~h~~~~-~~~ 382 (458)
|||+|||.|....+|...-+.--...+.-+|-. ..|..+.++. + +-.++.=++.++..-.+||+|=++++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 799999999999999843100001244444433 5555554444 2 11111111223333458999998766 554
Q ss_pred cccCCCCCCcchhhhhhcccccCCc
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEG 407 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g 407 (458)
+ ..=.+..++=++=|+|||||
T Consensus 81 ~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 L----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp S----SHHHHHHHHHHHHHTEEEEE
T ss_pred C----CHHHHHHHHHHHHHHhCCCC
Confidence 3 34467788999999999998
No 352
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=94.25 E-value=0.034 Score=52.48 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=69.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCC-ccccccccccccccccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPR-TYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~-t~dl~h~~~~~~~~~~~ 386 (458)
=.|||.|||.|.+-++|.+. +.|=..-|= ..+..+.-..+||+-=+-+|.-+-++.||- +||.+=.+.-+...+
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 46999999999999999953 666555442 123556778899998888899888888876 999998777776652
Q ss_pred CCCCCcchhhhhhcccccCCceEEEe
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
.-+.+|-||= |=|.-+|+.
T Consensus 90 ----~P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 90 ----RPDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred ----HHHHHHHHHH---HhcCeEEEE
Confidence 2457899994 556677763
No 353
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.21 E-value=0.29 Score=51.22 Aligned_cols=109 Identities=21% Similarity=0.335 Sum_probs=73.7
Q ss_pred ccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC-CeEEEeeccCCCC---CCCCCeeEE
Q 012709 41 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDML 112 (458)
Q Consensus 41 ~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~-~~~~~~~d~~~Lp---fp~~sFD~I 112 (458)
.++...||||..|-+|.=+.+++..-.-+..|++.|.+.+-+.....+ |+ +..+...|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 345567999999999966666654322345799999998877655443 55 4555666766554 554 89999
Q ss_pred E----eccccccc-----------------cccHHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 113 H----CARCGVDW-----------------DQKDGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 113 ~----~~~~l~~~-----------------~~~~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
. |+..-.-. ..-..++|..+..+++|||+|+.++-.+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 8 45410110 11113688889999999999999987553
No 354
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.93 E-value=0.051 Score=53.59 Aligned_cols=88 Identities=25% Similarity=0.506 Sum_probs=60.9
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch-hhhcccc--ccccccccccCCCCCCcccccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 383 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~-~~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~ 383 (458)
..++||+|||-|+--+.|...=+ .|.-++.+-+.. ---+||+ ++. .+|-+. +..||+|-|-+|++
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~-----~v~aTE~S~~Mr~rL~~kg~~vl~~-~~w~~~----~~~fDvIscLNvLD-- 162 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK-----EVYATEASPPMRWRLSKKGFTVLDI-DDWQQT----DFKFDVISCLNVLD-- 162 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc-----eEEeecCCHHHHHHHHhCCCeEEeh-hhhhcc----CCceEEEeehhhhh--
Confidence 46899999999999888862111 344444432222 2345886 333 347643 46799999888765
Q ss_pred ccCCCCCCcc-hhhhhhcccccCCceEEE
Q 012709 384 SGHRHRCSTL-DIFTEIDRILRPEGWVII 411 (458)
Q Consensus 384 ~~~~~~c~~~-~~~~e~drilrp~g~~~~ 411 (458)
||.-. .+|=+|-+-|+|+|.+|+
T Consensus 163 -----Rc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 163 -----RCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred -----ccCCHHHHHHHHHHHhCCCCEEEE
Confidence 88866 677789999999999997
No 355
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=93.62 E-value=0.061 Score=51.65 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=26.9
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecC
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPT 339 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~ 339 (458)
..|||.|||.|-.|..|.+++..|.-+=++|.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~ 67 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI 67 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence 58999999999999999977777777766555
No 356
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=93.42 E-value=0.15 Score=49.54 Aligned_cols=107 Identities=26% Similarity=0.458 Sum_probs=57.8
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCchh---------hhccccccccccccccCCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPM---------ILDRGFVGVLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l~~---------~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
++|||+|||.|+|+-.|.+.. +.|..+=+.+ ++|-- .|+.-=|- +-+|-+-.+.++ ++|+.-++
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~----~~l~~~l~~~~~v~~~~~~ni~-~~~~~~~~~d~~-~~DvsfiS 150 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY----NQLAEKLRQDERVKVLERTNIR-YVTPADIFPDFA-TFDVSFIS 150 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH----HHHHHHHhcCCCeeEeecCCcc-cCCHhHcCCCce-eeeEEEee
Confidence 689999999999999998431 1233332222 23321 12221122 335555433333 45544322
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEE-------------------EeccH---HHHHHHHHHHhhccceEEEE
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVI-------------------IRDTA---RLIESARALTTRLKWDARVI 435 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~-------------------~~d~~---~~~~~~~~~~~~~~w~~~~~ 435 (458)
+..+|-.|.+.|+| |.+| ++|.. .+++++...+.++.|++.-.
T Consensus 151 --------------~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 --------------LISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred --------------hHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 11245566666666 5555 35543 44677777788888886554
No 357
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.38 E-value=0.15 Score=53.99 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=57.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh---cc-cccccc----cccccc-CCCCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GFVGVL----HDWCEA-FPTYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~---~r-gl~g~~----~~~~~~-~~~yp~t~dl~h~~ 377 (458)
.+|+||+||.||++.+|.+.-.+- .|+-.|-. ..|..+- +| |+-... .|..+. +..-+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~~---~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQA---QVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCCC---eEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 489999999999998887431111 23333332 3333322 22 431001 121111 10123579999754
Q ss_pred ------ccccccccCCCCC----C-------cchhhhhhcccccCCceEEEe-------ccHHHHHHH
Q 012709 378 ------GLLSLESGHRHRC----S-------TLDIFTEIDRILRPEGWVIIR-------DTARLIESA 421 (458)
Q Consensus 378 ------~~~~~~~~~~~~c----~-------~~~~~~e~drilrp~g~~~~~-------d~~~~~~~~ 421 (458)
|++..- +...-+ . -..+|-+.=|+|||||.+++. ++.+++++.
T Consensus 317 aPcSg~G~~~~~-p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 317 APCSATGVIRRH-PDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred CCCCCCcccccC-cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 343321 000000 0 136888999999999999985 555555444
No 358
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.31 E-value=1.7 Score=41.93 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=77.9
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCCCCC-CCCeeEEEeccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYP-SLSFDMLHCARCGV 119 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~ 119 (458)
++.||||-.|.+..+|.+.+ +...+++.|+++..++.|.++ +. .+....+|. -.++. +..+|+|+.+.+--
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 49999999999999999976 567899999999999988765 22 344444544 22333 34799998765411
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEee
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 182 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~~ 182 (458)
. -....|.+-...|+.==++++.-. . . -..+++.+....|....+.
T Consensus 97 ~---lI~~ILee~~~~l~~~~rlILQPn-~-------~------~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 T---LIREILEEGKEKLKGVERLILQPN-I-------H------TYELREWLSANSYEIKAET 142 (226)
T ss_pred H---HHHHHHHHhhhhhcCcceEEECCC-C-------C------HHHHHHHHHhCCceeeeee
Confidence 1 123466666666664445665421 1 0 1247788888899888765
No 359
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.12 E-value=0.023 Score=48.11 Aligned_cols=97 Identities=26% Similarity=0.382 Sum_probs=54.0
Q ss_pred EEeeccccchhhhhhhhccC-CCeEEEEeecCCCCCCchhhh----ccc-------cccccccccccCCCCCCccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPMIL----DRG-------FVGVLHDWCEAFPTYPRTYDLVHA 376 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~~~l~~~~----~rg-------l~g~~~~~~~~~~~yp~t~dl~h~ 376 (458)
.|||++||.|.|+.++.+.. ..+..+=+-|. .+.+.- ..| ..|-+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~----~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPE----AVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHH----HHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHH----HHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998543 22222211111 111100 011 13333344444554 78999988
Q ss_pred cccccccccC--CCCCCcchhhhhhcccccCCceEEE
Q 012709 377 EGLLSLESGH--RHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 377 ~~~~~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+--|...... ..+=....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8777643100 0111344778899999999999876
No 360
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.08 E-value=0.077 Score=55.40 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=52.4
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHH---HHHHHHHcCCCeE-EEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGS---QVQLTLERGLPAM-IGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~---~i~~A~er~~~~~-~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
+||=++=..|.++..|+..+. . .+ .|.--. ..+-+..++.+.. +...+. ..++| +.+|+|+. .++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-~-~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~-~~~d~vl~-----~~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-Y-SI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYP-QQPGVVLI-----KVP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-C-ee--ehHHHHHHHHHHHHHHcCCCcccceeecc-ccccc-CCCCEEEE-----EeC
Confidence 789999999999999986442 1 12 332211 1122333455433 222222 22344 45898874 344
Q ss_pred ccH---HHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKD---GILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~---~~~L~ei~RvLkPGG~liis~~ 147 (458)
..- +..|..+.++|.||+.++..+.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 332 3567888899999999876653
No 361
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.03 E-value=0.14 Score=49.93 Aligned_cols=70 Identities=9% Similarity=0.239 Sum_probs=42.0
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-------------H----HHHHHHHHH----Hhh
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------A----RLIESARAL----TTR 427 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-------------~----~~~~~~~~~----~~~ 427 (458)
.+||+|..+.-=..| ..++-++=|.|||||.+++.+. . .....++++ ...
T Consensus 143 ~~fD~VfiDa~k~~y---------~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~ 213 (234)
T PLN02781 143 PEFDFAFVDADKPNY---------VHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASD 213 (234)
T ss_pred CCCCEEEECCCHHHH---------HHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhC
Confidence 589999865433333 3456666799999999996321 0 122334343 444
Q ss_pred ccceEEEEeeccCCCccEEEEEec
Q 012709 428 LKWDARVIEIESNSDERLLICQKP 451 (458)
Q Consensus 428 ~~w~~~~~~~~~~~~~~~~~~~k~ 451 (458)
=++++.+...- ++++|+.|.
T Consensus 214 ~~~~~~~lp~g----dG~~i~~k~ 233 (234)
T PLN02781 214 PRVEISQISIG----DGVTLCRRL 233 (234)
T ss_pred CCeEEEEEEeC----CccEEEEEe
Confidence 45666665432 678888875
No 362
>PRK00811 spermidine synthase; Provisional
Probab=92.89 E-value=0.079 Score=53.06 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=67.5
Q ss_pred eeEEeeccccchhhhhhhhccCC-CeEEEEeecCCCC-CCchhhhc------ccc-----ccc-cccccccCCCCCCccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGK-SVWVMNVVPTIGT-NHLPMILD------RGF-----VGV-LHDWCEAFPTYPRTYD 372 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~-~~~~m~v~~~~~~-~~l~~~~~------rgl-----~g~-~~~~~~~~~~yp~t~d 372 (458)
-++|||+|||.|+.+..++ +. ++- +|+-++-. ..+.++-+ .|+ +-+ ..|-.+-..+-+.+||
T Consensus 77 p~~VL~iG~G~G~~~~~~l--~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVL--KHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCEEEEEecCchHHHHHHH--cCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 5899999999999999888 54 333 22222221 22222211 011 111 1111111122346899
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec--c--CCCc
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE--S--NSDE 443 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~--~--~~~~ 443 (458)
+|=.+ ++..+.. ...--...++-++-|+|+|||.++++-. .+.+..+.+.+++.--.+...... . ++.-
T Consensus 153 vIi~D-~~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w 230 (283)
T PRK00811 153 VIIVD-STDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLW 230 (283)
T ss_pred EEEEC-CCCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchh
Confidence 98643 2222200 0000013456688999999999998522 233344444444443344443321 1 1223
Q ss_pred cEEEEEe
Q 012709 444 RLLICQK 450 (458)
Q Consensus 444 ~~~~~~k 450 (458)
.+++|.|
T Consensus 231 ~f~~as~ 237 (283)
T PRK00811 231 SFTFASK 237 (283)
T ss_pred eeEEeec
Confidence 4677766
No 363
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=92.82 E-value=0.072 Score=54.40 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hcccccc--c-cccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g--~-~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|||.+||+|+|+..+...... |+-.|.. ..+..+ -.-|+-. + ..|-. .++.-+.+||+|=++--
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~~~-----v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMGAK-----VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPP 257 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhCCe-----EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCC
Confidence 47999999999996544311332 3323332 222211 1124322 1 12221 12322358898876533
Q ss_pred ccc---cccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccc
Q 012709 380 LSL---ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 430 (458)
Q Consensus 380 ~~~---~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w 430 (458)
|.. ............+|-|+-|+|+|||++++--... ..++++++.--|
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 321 1000001224688999999999999987643221 244456666666
No 364
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.66 E-value=0.44 Score=46.88 Aligned_cols=125 Identities=13% Similarity=0.213 Sum_probs=77.7
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC----CCchh----hhccc--cccccccccccCCCCCCcccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPM----ILDRG--FVGVLHDWCEAFPTYPRTYDLVH 375 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~----~~l~~----~~~rg--l~g~~~~~~~~~~~yp~t~dl~h 375 (458)
..+.|+|+|||.|.-+=+|..+..++=+.-| -.+.. .+-.+ .-+|- +=+=+..|+.++.. .+||+|=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~V-Eiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGV-EIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEE-EeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 3789999999999766666633222222211 11110 00011 11221 12233456666654 4788877
Q ss_pred ccccccccc------------cCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 376 AEGLLSLES------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 376 ~~~~~~~~~------------~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
++-=|=... .....|.+++++-=--++|+|||++.+=-..+.+.++-.++++++|...
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 664442210 1133577888888888999999999998888999999999999999844
No 365
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.64 E-value=0.19 Score=41.65 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=53.9
Q ss_pred Eeeccccchh--hhhhhhccCCCeEEEEeecCCCC-CCchhhhcc----c---cccccccccc-cCCCCC-Ccccccccc
Q 012709 310 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----G---FVGVLHDWCE-AFPTYP-RTYDLVHAE 377 (458)
Q Consensus 310 ~~d~~~~~g~--faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~r----g---l~g~~~~~~~-~~~~yp-~t~dl~h~~ 377 (458)
++|++||.|. +.+.+. .....+.. .+.. ..+.....+ + +-....+... .++.-. .+||++ ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~--~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLG--GRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhC--CCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 555555 33323333 2222 122221111 1 1223333333 133322 379998 55
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
.....+ .. ...++-++-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~---~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHL---LP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhc---CC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 555444 22 678899999999999999986544
No 366
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.63 E-value=0.4 Score=51.52 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHc-----CCCeE
Q 012709 22 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----GLPAM 93 (458)
Q Consensus 22 ~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er-----~~~~~ 93 (458)
+.|++.+...|..+...- .+....+|+=+|+|.|-+....++. .....++++++-+++++-....+ .-.+.
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~-~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vt 424 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDE-SAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVT 424 (649)
T ss_pred HHHHHHHHHHHHhhCccc-ccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeE
Confidence 556666555554432111 1222567899999999776654432 12345899999999988776655 34688
Q ss_pred EEeeccCCCCCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCcEEEEEe
Q 012709 94 IGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 94 ~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~~--~~~L~ei~RvLkPGG~liis~ 146 (458)
++..|+..++-|..+.|++++= .+-.+-++. .+.|..+-+.|||.|..+=+.
T Consensus 425 ii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 425 IISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred EEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 8889999988666889999963 344444332 369999999999998776544
No 367
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.33 E-value=0.42 Score=47.39 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=67.2
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhcc-----c-----ccccc-ccccccCCCCCCcccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILDR-----G-----FVGVL-HDWCEAFPTYPRTYDL 373 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~r-----g-----l~g~~-~~~~~~~~~yp~t~dl 373 (458)
-++||++|||.|+++..++ +.+ +- +|+-++-. +.+..+-+. | -+-+. .|-.+-....+++||+
T Consensus 73 p~~VL~iG~G~G~~~~~ll--~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVL--KHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHH--hCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 3689999999999998887 443 22 22222222 111111110 0 01111 1211111233678999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-----HHHHHHHHHHHhhccceEEEEeec----cCCCcc
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-----ARLIESARALTTRLKWDARVIEIE----SNSDER 444 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-----~~~~~~~~~~~~~~~w~~~~~~~~----~~~~~~ 444 (458)
|=.+... .... ....-....+-.+-|+|+|||.+++.-. ...+..+.+.+++.=..+....+- .++.-.
T Consensus 149 Ii~D~~~-~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~ 226 (270)
T TIGR00417 149 IIVDSTD-PVGP-AETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWT 226 (270)
T ss_pred EEEeCCC-CCCc-ccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhE
Confidence 8655321 1200 0011123455678899999999998532 233444444444433334333221 122346
Q ss_pred EEEEEe
Q 012709 445 LLICQK 450 (458)
Q Consensus 445 ~~~~~k 450 (458)
+++|.|
T Consensus 227 ~~~as~ 232 (270)
T TIGR00417 227 FTIGSK 232 (270)
T ss_pred EEEEEC
Confidence 777777
No 368
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=92.24 E-value=0.19 Score=50.70 Aligned_cols=97 Identities=25% Similarity=0.366 Sum_probs=61.8
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccc-ccc-----ccCCCCCCccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 380 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~-~~~-----~~~~~yp~t~dl~h~~~~~ 380 (458)
=|.|+|+|||-|-|.=.|..+ .+-.|+-+=|..- -.+|+-+-+-++|.-. -.. |..+. ..+||+|-+.|||
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 389999999999999888743 3334554544322 2333333333333111 011 22455 6899999999998
Q ss_pred cccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 381 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 381 ~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
=+. | +-.+.|.++=..|||||-+|+.
T Consensus 193 YHr-----r-~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YHR-----R-SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hcc-----C-CHHHHHHHHHHhhCCCCEEEEE
Confidence 644 2 3345688999999999999963
No 369
>PRK01581 speE spermidine synthase; Validated
Probab=92.09 E-value=0.28 Score=50.97 Aligned_cols=140 Identities=15% Similarity=0.085 Sum_probs=68.7
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCC-CCchhhhc--------cc-c-----ccccccccccCCCCCCc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMILD--------RG-F-----VGVLHDWCEAFPTYPRT 370 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~-~~l~~~~~--------rg-l-----~g~~~~~~~~~~~yp~t 370 (458)
-++||++|||.|+.+..++ ..+ += +|+-++-. .-+.++-+ +| + --++.|-.+-...-++.
T Consensus 151 PkrVLIIGgGdG~tlrelL--k~~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 151 PKRVLILGGGDGLALREVL--KYETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCEEEEECCCHHHHHHHHH--hcCCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 5899999999999888887 433 22 22222221 22222221 11 1 00122222212233467
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH-----HHHHHHHHHHhhccceEEEEeec--c-CCC
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----RLIESARALTTRLKWDARVIEIE--S-NSD 442 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~-----~~~~~~~~~~~~~~w~~~~~~~~--~-~~~ 442 (458)
||+|=.+- .........+---...+-.+-|.|+|||.++++... ..+..+.+.++...-.+..+.+- . ++.
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 99988762 221100001111134667889999999999987542 22233444444444444433321 1 111
Q ss_pred ccEEEEEec
Q 012709 443 ERLLICQKP 451 (458)
Q Consensus 443 ~~~~~~~k~ 451 (458)
=.+.++.|.
T Consensus 306 WgF~~as~~ 314 (374)
T PRK01581 306 WGFHIAANS 314 (374)
T ss_pred eEEEEEeCC
Confidence 346666554
No 370
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=92.02 E-value=0.098 Score=50.44 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=65.8
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCch-hhhcccccccc--------------ccccccCCCC---C-
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P- 368 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l~-~~~~rgl~g~~--------------~~~~~~~~~y---p- 368 (458)
..|||.|||.|--|..|.+++..|.-+=++|. -+. ..-++|+-... +-+|.-+..+ +
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHH----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 37999999999999999966555554433332 111 12345553211 1122212111 1
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE---e---cc---H---HHHHHHHHHHhhccceEEEEe
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---R---DT---A---RLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~---~---d~---~---~~~~~~~~~~~~~~w~~~~~~ 436 (458)
-+||++-...+|..+ ....-..++-.|-++|+|||.+++ . +. + -..++++++.. =+|++....
T Consensus 115 ~~fd~v~D~~~~~~l----~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 115 ADVDAVYDRAALIAL----PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred CCeeEEEehHhHhhC----CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 256776655555543 122234678899999999996443 1 11 0 11345555543 238877665
Q ss_pred e
Q 012709 437 I 437 (458)
Q Consensus 437 ~ 437 (458)
.
T Consensus 190 ~ 190 (218)
T PRK13255 190 R 190 (218)
T ss_pred e
Confidence 3
No 371
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=91.85 E-value=1.2 Score=46.28 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC-C-----CC-CCCCeeEEEec
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-----PY-PSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~-L-----pf-p~~sFD~I~~~ 115 (458)
...+||.+|||. |..+..+++... ..+++++|.+++..+.+++.+. +.+....... + .+ ..+.+|+|+-.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 446899999987 778888877531 2359999999999999988731 2222211111 0 12 22368999864
Q ss_pred ccc-------c-------cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCG-------V-------DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l-------~-------~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-.. + +-..+....+.++.+.|+|+|.+++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 210 0 0112234588999999999999999864
No 372
>PHA01634 hypothetical protein
Probab=91.80 E-value=0.79 Score=40.66 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..++|+|||++-|..+.+.+-+|.. .|+++++++...+..++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHH
Confidence 4579999999999999999988865 899999999999988875
No 373
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.63 E-value=0.15 Score=49.70 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=62.7
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-cccccccccc----CCCCCCccccccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCEA----FPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-~g~~~~~~~~----~~~yp~t~dl~h~~~~~~~ 382 (458)
.|||+|||-|.++-.|..++. +|.-+|.. ..+.++-.+.+ -|+.-+|-.. +-.==-+||.|=+..++.+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga-----~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA-----SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC-----eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 599999999999999985553 77777876 67777654444 2222222111 0000035777776666665
Q ss_pred cccCCCCCCcchhhhhhcccccCCceEEEec
Q 012709 383 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 383 ~~~~~~~c~~~~~~~e~drilrp~g~~~~~d 413 (458)
+ -+...++-+..+.+||||.+.++.
T Consensus 137 v------~dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 137 V------PDPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred c------CCHHHHHHHHHHHcCCCcEEEEec
Confidence 5 234468999999999999999863
No 374
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.52 E-value=0.69 Score=45.01 Aligned_cols=99 Identities=19% Similarity=0.191 Sum_probs=62.3
Q ss_pred cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CC--C
Q 012709 19 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GL--P 91 (458)
Q Consensus 19 d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~--~ 91 (458)
-+.+.|++.++++|....+.+. +..-++||||.|.-..--.+--+-+ +.+++|.|+++..++.|+.. +. .
T Consensus 55 PgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhh
Confidence 4567899999999987655443 3445899999887655444433221 45899999999988887654 11 1
Q ss_pred eEEEe-eccCCC-C---CCCCCeeEEEecccccc
Q 012709 92 AMIGS-FASKQL-P---YPSLSFDMLHCARCGVD 120 (458)
Q Consensus 92 ~~~~~-~d~~~L-p---fp~~sFD~I~~~~~l~~ 120 (458)
+++.. -+...+ + -..+.||++.|+--++.
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCCcch
Confidence 22221 111111 1 12478999999965443
No 375
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=91.43 E-value=0.58 Score=48.09 Aligned_cols=107 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhc---------------CCccceEEEEcCCHHHHHHH----------HHcCCCeEEE--
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLT----------LERGLPAMIG-- 95 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~---------------~~~~~~v~gvD~S~~~i~~A----------~er~~~~~~~-- 95 (458)
.+.-+|+|+||..|..+..+.+. ..+..+|.-.|.-.+-.... .....++...
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44568999999999888776432 12335777788544221110 0111222222
Q ss_pred eeccCCCCCCCCCeeEEEecccccccccc-H-----------------------H---------------HHHHHHHhcc
Q 012709 96 SFASKQLPYPSLSFDMLHCARCGVDWDQK-D-----------------------G---------------ILLLEVDRVL 136 (458)
Q Consensus 96 ~~d~~~Lpfp~~sFD~I~~~~~l~~~~~~-~-----------------------~---------------~~L~ei~RvL 136 (458)
-+....-=||+++.|+++|+.+ +||... | . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEech-hhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 1222222389999999999976 666321 1 1 2344445678
Q ss_pred cCCcEEEEEeCCCC
Q 012709 137 KPGGYFVWTSPLTN 150 (458)
Q Consensus 137 kPGG~liis~~~~~ 150 (458)
+|||+++++.....
T Consensus 174 v~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 174 VPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEE-S
T ss_pred ccCcEEEEEEeecc
Confidence 99999999987553
No 376
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.35 E-value=1.6 Score=43.09 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH--HHHHc--------CCCeEEEeeccCC---CCCCCCC-e
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ--LTLER--------GLPAMIGSFASKQ---LPYPSLS-F 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~--~A~er--------~~~~~~~~~d~~~---Lpfp~~s-F 109 (458)
...+||++|+|+|..+...+... ..++.-.|...-... ..++. |..+.+...+-.. ..+.... |
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 34579999999997666666532 347777887654332 22221 2233333322111 1111123 9
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 110 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 110 D~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
|+|+++.|+++-. ..+.++.-+...|..+|.+++..+
T Consensus 164 DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 164 DLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred cEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999999977644 556688888888999997767665
No 377
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=91.08 E-value=0.16 Score=51.86 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.7
Q ss_pred eEEeeccccchhhhhhhhc
Q 012709 308 RNVLDMNAHFGGFNSALLE 326 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~ 326 (458)
-.|+|+|||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 4799999999999998873
No 378
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=90.99 E-value=0.27 Score=48.49 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=63.0
Q ss_pred eEEeeccccchhhhhhhhccCCCe---EEEEeecCCC-CCCchhhhcccc-cccccc----ccc------cCCCCCCccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSV---WVMNVVPTIG-TNHLPMILDRGF-VGVLHD----WCE------AFPTYPRTYD 372 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~---~~m~v~~~~~-~~~l~~~~~rgl-~g~~~~----~~~------~~~~yp~t~d 372 (458)
=+||||.||+|--|=.+++.-+.. =-=+|+-.|- ++.|.+.-.|-. -+..-+ |-+ ||++ .+||
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~s~D 179 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--DSFD 179 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--Ccce
Confidence 579999999998877776311110 0012223333 477877665542 122222 322 4554 7999
Q ss_pred cccccccccccccCCCCCC-cchhhhhhcccccCCceEEEeccHHHH-HHHHHH
Q 012709 373 LVHAEGLLSLESGHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLI-ESARAL 424 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~-~~~~~~e~drilrp~g~~~~~d~~~~~-~~~~~~ 424 (458)
+.-...-. ..|. ++..|=|+-|+|+|||-|.+=+-..+= +.++.+
T Consensus 180 ~yTiafGI-------RN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f 226 (296)
T KOG1540|consen 180 AYTIAFGI-------RNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF 226 (296)
T ss_pred eEEEecce-------ecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH
Confidence 86533221 2343 778999999999999999875544433 344444
No 379
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=90.65 E-value=0.39 Score=50.87 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=53.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh---hcc-cc-cc-ccccccccCCCC-CCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---LDR-GF-VG-VLHDWCEAFPTY-PRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~---~~r-gl-~g-~~~~~~~~~~~y-p~t~dl~h~~~~ 379 (458)
..|||+|||.|+++.+|.++.... .|+-.|.. ..+..+ ++| |+ +- +-+|-.+....+ +.+||.|=.+--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~~---~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQA---QVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 469999999999999887543221 23333432 333332 122 32 11 123333321112 357999874432
Q ss_pred cccc---c--cC----CCC-------CCcchhhhhhcccccCCceEEEe
Q 012709 380 LSLE---S--GH----RHR-------CSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~---~--~~----~~~-------c~~~~~~~e~drilrp~g~~~~~ 412 (458)
+|.. . +. ... .....+|-+.=++|+|||.+++.
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 0 00 000 01125788899999999999975
No 380
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.50 E-value=3.9 Score=42.73 Aligned_cols=105 Identities=20% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCEEEEECCCCc----hhHHHHhhc--CCccceEEEEcC----CHHHHH--------HHHHcCCCeEEEeecc---CC--
Q 012709 45 VRTILDIGCGYG----SFGAHLFSK--ELLTMCIANYEA----SGSQVQ--------LTLERGLPAMIGSFAS---KQ-- 101 (458)
Q Consensus 45 ~~~VLDVGCG~G----~~~~~La~~--~~~~~~v~gvD~----S~~~i~--------~A~er~~~~~~~~~d~---~~-- 101 (458)
.-.|+|+|.|.| .+...|+.+ +.|..+|++++. +..-++ +|+..|++.+|...-. +.
T Consensus 111 ~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~ 190 (374)
T PF03514_consen 111 RVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLD 190 (374)
T ss_pred ceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCC
Confidence 347999999999 555556654 456789999999 665554 4455588887776422 22
Q ss_pred ---CCCCCCCeeEEEecccccccccc------HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 102 ---LPYPSLSFDMLHCARCGVDWDQK------DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 102 ---Lpfp~~sFD~I~~~~~l~~~~~~------~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+...++..=+|.|...+++..++ +...+-...|-|+|.- +++++...+
T Consensus 191 ~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea~ 247 (374)
T PF03514_consen 191 PSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEAD 247 (374)
T ss_pred HHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecCC
Confidence 22334555566666666666422 3345667778899994 445554443
No 381
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.49 E-value=0.45 Score=45.54 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=53.6
Q ss_pred CCCEEEEECCCCchhHHHHhh---cCCccceEEEEcCCHHHHH-HHHHc---CCCeEEEeeccCCCC----C----CCCC
Q 012709 44 GVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQ-LTLER---GLPAMIGSFASKQLP----Y----PSLS 108 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~---~~~~~~~v~gvD~S~~~i~-~A~er---~~~~~~~~~d~~~Lp----f----p~~s 108 (458)
.++.|+|+|.-.|.-+.++++ .-....+|+++|+.-.... .|.+. ..++.+..+|..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 357999999999866665543 2224569999999543322 22222 257888888865432 1 1123
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 109 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 109 FD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
-.+|+-- . .|-..+--..|+....+++||+|+++.+..
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 3455432 2 454556567788899999999999998753
No 382
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=90.31 E-value=0.19 Score=45.77 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=34.9
Q ss_pred cccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 361 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 361 ~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
++.+|.-+.+||++=+...+..+ . +....|-||-|+|+|||.+++-|-
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~---~---d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV---V---DRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC---C---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 34455445699999876655544 2 445789999999999999998653
No 383
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.29 E-value=1.6 Score=43.46 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=62.9
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~~ 117 (458)
...+||..|+| .|..+..+++.. ..+++.++.++...+.+++.+....+..-+ ... ....+.+|+|+....
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC
Confidence 34688888876 467777777642 347999999999999998776533222111 000 123457999885421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
....+.++.+.|+++|.++....
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13478889999999999998754
No 384
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=90.21 E-value=0.24 Score=52.76 Aligned_cols=100 Identities=19% Similarity=0.285 Sum_probs=54.1
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----ccccc---ccccccccCCCCCCcccccccc-
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLHDWCEAFPTYPRTYDLVHAE- 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl~g---~~~~~~~~~~~yp~t~dl~h~~- 377 (458)
.+|+||+||.|+++.++.+.- ... .|+-++-. +.+..+-+ .|+-. +-.|..+....++.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 579999999999998887321 111 23333332 33333222 24311 2234333223345789998543
Q ss_pred -----ccccc-----cccCCCCCCc-------chhhhhhcccccCCceEEEe
Q 012709 378 -----GLLSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 -----~~~~~-----~~~~~~~c~~-------~~~~~e~drilrp~g~~~~~ 412 (458)
|++.. |. ...-.+ ..+|-+.=|+|||||.+++.
T Consensus 329 Pcsg~G~~~~~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYN--KTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhc--CCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 22221 00 000111 25788889999999999974
No 385
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.10 E-value=0.4 Score=46.51 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCc----c----ceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC--------CCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELL----T----MCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPS 106 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~----~----~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp--------fp~ 106 (458)
.+..+|+|+-+..|+++..|.++-.. . ..|+++|+.+-. -- ..+.-.++|+.... |..
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI--~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PI--EGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----cc--CceEEeecccCCHhHHHHHHHHhCC
Confidence 45679999999999999999875322 1 128899986521 00 12344455554432 555
Q ss_pred CCeeEEEeccc-----cccccccHH-----HHHHHHHhcccCCcEEEEEeC
Q 012709 107 LSFDMLHCARC-----GVDWDQKDG-----ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 107 ~sFD~I~~~~~-----l~~~~~~~~-----~~L~ei~RvLkPGG~liis~~ 147 (458)
+..|+|+|-.+ +|.+.+..+ .+|.-...+|||||.|+---+
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 68899999643 233322211 345566789999999987543
No 386
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.88 E-value=0.19 Score=46.19 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=35.2
Q ss_pred CCCeeEEEecccccccc-------cc---HHHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 106 SLSFDMLHCARCGVDWD-------QK---DGILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 106 ~~sFD~I~~~~~l~~~~-------~~---~~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
.++||.+.|..++.|.- -+ ..+.+.++.++|||||.|+++.|...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36799999987776741 11 13789999999999999999998653
No 387
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=89.76 E-value=0.89 Score=45.28 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=75.4
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC--CCCeeEEEeccccccc---
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCARCGVDW--- 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp--~~sFD~I~~~~~l~~~--- 121 (458)
+|+|+-||.|.++.-+.+.|+. .+.++|+++.+++..+.+.... +...|...+... ...+|+++.+.-=-.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999888887753 5789999999998887774332 445565555322 2569999976420111
Q ss_pred -----cccH-HHHHHHHHhc---ccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 122 -----DQKD-GILLLEVDRV---LKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 122 -----~~~~-~~~L~ei~Rv---LkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
..++ ..++.++.|+ ++|. +++.+....... ......++.+...++++++....
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~----~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLT----HDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhc----cCchHHHHHHHHHHHhCCcEEEE
Confidence 1122 2344444444 4565 555554432211 01123456666667777776543
No 388
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=89.67 E-value=0.2 Score=46.40 Aligned_cols=107 Identities=23% Similarity=0.341 Sum_probs=55.5
Q ss_pred ceeEEeeccccch--hhhhhhhccCCCeEEEEeecCCCCCCchh---hhcc------c-cccccccccccC--CC-CCCc
Q 012709 306 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLPM---ILDR------G-FVGVLHDWCEAF--PT-YPRT 370 (458)
Q Consensus 306 ~~r~~~d~~~~~g--~faa~l~~~~~~~~~m~v~~~~~~~~l~~---~~~r------g-l~g~~~~~~~~~--~~-yp~t 370 (458)
+-++||+.|||.| |.++|.. . ....|+-+|.+..++. -.++ + +--.-.+|.++. .. -++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--F---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhc--c---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 3479999999988 7777666 1 1114555555443332 1111 1 234456897743 11 1468
Q ss_pred cccccccccccccccCCCCCCcchhhhhhcccccCCceEEE----e--ccHHHHHHHHH
Q 012709 371 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII----R--DTARLIESARA 423 (458)
Q Consensus 371 ~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~----~--d~~~~~~~~~~ 423 (458)
||+|-|+.++=.. -..+.++-=++++|.|+|-+++ | ....+++++++
T Consensus 120 ~D~IlasDv~Y~~------~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 120 FDVILASDVLYDE------ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp BSEEEEES--S-G------GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred CCEEEEecccchH------HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 9999988887432 1234455568999999999887 2 23345565554
No 389
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=89.55 E-value=0.52 Score=46.61 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=51.6
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----ccc--ccccccccccCCCCCCcccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
-.|+||+||.|+++.+|.+.- ..- .|+-.+.. .-+..+-+ .|+ +-+++.=...++.....||.|-.+-=
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 359999999999998775321 111 23333433 33333222 233 12221111223332345888864322
Q ss_pred cccc---c--cCC----CCCC-------cchhhhhhcccccCCceEEEe
Q 012709 380 LSLE---S--GHR----HRCS-------TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 380 ~~~~---~--~~~----~~c~-------~~~~~~e~drilrp~g~~~~~ 412 (458)
.|.. . ++. ..-. -..+|-++=++|||||++++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211 0 000 0000 125888899999999999985
No 390
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=89.47 E-value=0.73 Score=43.40 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=63.6
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCC----CCchhhh-cccccc----ccccccccCCCCCCcccccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL-DRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~----~~l~~~~-~rgl~g----~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
+|||.|||-|.+---|.+..-+-= ++-++=+ ...+-|. .+|+-- .-.|.-.| ...+.-||+||-.|-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~---L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSK---LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCC---ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 899999999999888874321110 1111110 1112233 345421 00111111 222357999999999
Q ss_pred cccccc--CCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhh
Q 012709 380 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTR 427 (458)
Q Consensus 380 ~~~~~~--~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~ 427 (458)
|+.++- ....-.+...+==++++|+|||.|+|..=.-..+++.+....
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 987631 011112234555688999999999997655555555554433
No 391
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=89.41 E-value=0.86 Score=46.07 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred eeEEeeccccchhhhhhhhccCCCeEEEEeecCCC-CCCchhhhc----cccccccccccccCCCCC--Ccccccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEGL 379 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~-~~~l~~~~~----rgl~g~~~~~~~~~~~yp--~t~dl~h~~~~ 379 (458)
-|||+|.|||+|=+|=|....+-. -|+-+|- +-.+.++.| -|+--..+.-+-.-++-| +.||+|=|+=|
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~----~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL 238 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAK----KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL 238 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCc----eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence 399999999999887555522211 0112221 123333333 111100011111111222 47888874432
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEeccHH-HHHHHHHHHhhccceEEEEe
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDARVIE 436 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~-~~~~~~~~~~~~~w~~~~~~ 436 (458)
=.-+ ..+.=++-|.|+|||++|++--.+ -.+.|.+...+=.|++.-+.
T Consensus 239 A~vl---------~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 239 AEVL---------VELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHH---------HHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 2211 134446789999999999874221 13555555555567765554
No 392
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.13 E-value=24 Score=34.68 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHH----HHHcCCCeEEEeeccCCCCCCC---CCeeEEEec
Q 012709 44 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPS---LSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~----A~er~~~~~~~~~d~~~Lpfp~---~sFD~I~~~ 115 (458)
.+++||-+|=..- +++..|. + ...+|+.+|+.+..+++ |.+.+.++.....|... |+|. ++||++++-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~--~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~-~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALT--G-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRD-PLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHH--T---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS----TTTSS-BSEEEE-
T ss_pred cCCEEEEEcCCcHHHHHHHhh--C-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccc-cCCHHHhcCCCEEEeC
Confidence 4579999996554 3333332 2 34689999999999875 45568888888887643 3443 789999986
Q ss_pred ccccccccc-HHHHHHHHHhcccCCc-EEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 116 RCGVDWDQK-DGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 116 ~~l~~~~~~-~~~~L~ei~RvLkPGG-~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
- +++.. ...++......||..| ..+++-... +.....|.++++.+..+++-...
T Consensus 120 P---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~--------~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 120 P---PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK--------EASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT--------T--HHHHHHHHHHHHTS--EEEE
T ss_pred C---CCCHHHHHHHHHHHHHHhCCCCceEEEEEecC--------cCcHHHHHHHHHHHHHCCcCHHH
Confidence 3 23322 2367888888998766 433332211 11345688888888888876554
No 393
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=89.12 E-value=0.34 Score=51.81 Aligned_cols=145 Identities=22% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCccccccchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhh------hhhccCCCeEE
Q 012709 260 VHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNS------ALLEKGKSVWV 333 (458)
Q Consensus 260 ~~~~~f~~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa------~l~~~~~~~~~ 333 (458)
.+.|.|+.|.-.+..-=..-...+.......... .+--+|||+|||.|-... +-. +..+=
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~-----------~~~~vVldVGAGrGpL~~~al~A~~~~--~~a~~- 216 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYS-----------SKDKVVLDVGAGRGPLSMFALQAGARA--GGAVK- 216 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SE-----------ETT-EEEEES-TTSHHHHHHHHTTHHH--CCESE-
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhcccc-----------ccceEEEEeCCCccHHHHHHHHHHHHh--CCCeE-
Confidence 3689999998766542222222222222221000 013579999999998742 112 22222
Q ss_pred EEeecCCCC----CCch-hhhcccc---ccccccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccC
Q 012709 334 MNVVPTIGT----NHLP-MILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRP 405 (458)
Q Consensus 334 m~v~~~~~~----~~l~-~~~~rgl---~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp 405 (458)
|..++.. .+|+ .+-+.|+ |=++|.==+.+.. |--.|+|=.-=+-|.. .+- .+..+|.-.||.|+|
T Consensus 217 --VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIVSElLGsfg---~nE-l~pE~Lda~~rfLkp 289 (448)
T PF05185_consen 217 --VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIVSELLGSFG---DNE-LSPECLDAADRFLKP 289 (448)
T ss_dssp --EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEEE---BTTB---TTT-SHHHHHHHGGGGEEE
T ss_pred --EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEEEeccCCcc---ccc-cCHHHHHHHHhhcCC
Confidence 2222322 2342 2244444 6666655454444 4567776532222222 111 344678889999999
Q ss_pred CceEE----------EeccHHHHHHHHHHHh
Q 012709 406 EGWVI----------IRDTARLIESARALTT 426 (458)
Q Consensus 406 ~g~~~----------~~d~~~~~~~~~~~~~ 426 (458)
+|.+| +.+ ....+++.....
T Consensus 290 ~Gi~IP~~~t~ylaPiss-~~l~~~~~~~~~ 319 (448)
T PF05185_consen 290 DGIMIPSSYTSYLAPISS-PKLYQEVRNWWN 319 (448)
T ss_dssp EEEEESSEEEEEEEEEE--HHHHHHHHHHHG
T ss_pred CCEEeCcchhhEEEEeeC-HHHHHHHHhhcc
Confidence 99888 334 455666654433
No 394
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=89.02 E-value=0.79 Score=48.34 Aligned_cols=67 Identities=21% Similarity=0.149 Sum_probs=47.9
Q ss_pred ccchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 18 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 18 fd~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
+++...|..-+...+......+ ..+..-|||||.|||.++...++.+.. .+++++.-..|...|++-
T Consensus 42 ~dRNiky~~gi~~tIte~kh~~--~~gkv~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 42 SDRNIKYRLGIEKTITEPKHVL--DIGKVFVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKI 108 (636)
T ss_pred ccccHHHHHHHHHHhcccceec--cCceEEEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHH
Confidence 3455666666666665443321 122236999999999999999888743 799999999999988763
No 395
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.85 E-value=2.9 Score=45.53 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCCchh-HHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---------CC--C-------
Q 012709 43 AGVRTILDIGCGYGSF-GAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QL--P------- 103 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~-~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---------~L--p------- 103 (458)
..+.+|+=+|||.-.+ +...++.- ...|+++|.+++-++.+++.|........... .+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 3468999999996544 44444431 33799999999999999987765221111000 00 0
Q ss_pred -CCC--CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 104 -YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 104 -fp~--~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+.+ +.+|+|+..-. ..-...+..+.+++.+.+||||.++....
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999997742 33222343345999999999999998765
No 396
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.70 E-value=2.5 Score=42.85 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=60.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEee--ccCCCCCCCCCeeEEEeccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGV 119 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~--d~~~Lpfp~~sFD~I~~~~~l~ 119 (458)
..++||=+||| .|..+..+++. |. .+++++|.+++.++.|++.|....+... +...+....+.||+|+-.-.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC--
Confidence 35688888986 34555555553 22 2688999999999999988764332111 11111111235898885421
Q ss_pred cccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 120 DWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 120 ~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+....+.|++||.+++...
T Consensus 245 ----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2367888999999999999874
No 397
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.66 E-value=0.22 Score=42.78 Aligned_cols=39 Identities=21% Similarity=0.695 Sum_probs=26.9
Q ss_pred CeeEEEeccccccc---c-ccHH--HHHHHHHhcccCCcEEEEEeC
Q 012709 108 SFDMLHCARCGVDW---D-QKDG--ILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 108 sFD~I~~~~~l~~~---~-~~~~--~~L~ei~RvLkPGG~liis~~ 147 (458)
.||+|.|..+ .-| . .|.+ .+++.+++.|+|||.|++--.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 4999999754 222 1 1222 799999999999999999643
No 398
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.50 E-value=0.59 Score=40.14 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcC
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 77 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~ 77 (458)
......|+|||+|.+..-|.+.|++ =.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---cccccc
Confidence 3457999999999999999998874 456665
No 399
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=88.32 E-value=0.22 Score=49.67 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeE------------EEeeccC-----CCCCC
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM------------IGSFASK-----QLPYP 105 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~------------~~~~d~~-----~Lpfp 105 (458)
...++|||+|||.|.-+.+....+. .++...|.+...++.-.-....+. +...-.. ..-..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t 192 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHT 192 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhc
Confidence 4567999999999999888887652 477888888766531110000000 0000000 01111
Q ss_pred C-CCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 106 S-LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 106 ~-~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. -.||+|.++..++........+......++++.|.++++..
T Consensus 193 ~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhH
Confidence 1 26899998887666553333336677778899999888764
No 400
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=2.4 Score=38.66 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=64.7
Q ss_pred HHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc------CCCeEEEeecc
Q 012709 26 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFAS 99 (458)
Q Consensus 26 ~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er------~~~~~~~~~d~ 99 (458)
+++++.+.+.. ..+..+.+|+|.|.|......++.+.. ..+|++.++-.+.+++-+ +....|..-|.
T Consensus 59 eQv~nVLSll~-----~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 59 EQVENVLSLLR-----GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred HHHHHHHHHcc-----CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 45555555432 244468999999999999888887732 678999999998887655 22455555555
Q ss_pred CCCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 100 KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 100 ~~Lpfp~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
....+.+-.+-+|+-. .....+ +-..+..-+..+-.++-.-
T Consensus 132 wK~dl~dy~~vviFga---es~m~d---Le~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 132 WKVDLRDYRNVVIFGA---ESVMPD---LEDKLRTELPANTRVVACR 172 (199)
T ss_pred hhccccccceEEEeeh---HHHHhh---hHHHHHhhCcCCCeEEEEe
Confidence 5555544344444433 222322 2223333455665555443
No 401
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=88.10 E-value=0.76 Score=44.67 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=69.7
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC--CCchhhhcccc--ccccc-cccccCCCCC-C-ccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGF--VGVLH-DWCEAFPTYP-R-TYDLVHAEGLL 380 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~--~~l~~~~~rgl--~g~~~-~~~~~~~~yp-~-t~dl~h~~~~~ 380 (458)
..++++|||.|.|-++|..++...-.+-|=+.... .-+.-|-+.|| |-++. |=-+-+..++ . +.|-|+. .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 47999999999999999865555544444333332 34445667777 44442 2122222222 2 6776662 23
Q ss_pred c-ccccCCC---CCCcchhhhhhcccccCCceEEEe-ccHHHHHH-HHHHHhh
Q 012709 381 S-LESGHRH---RCSTLDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 427 (458)
Q Consensus 381 ~-~~~~~~~---~c~~~~~~~e~drilrp~g~~~~~-d~~~~~~~-~~~~~~~ 427 (458)
. .|..+.+ |=--...|=++-|+|+|||.+-+. |..+..+. +...+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 2 3432211 222236788899999999999995 55555555 5555443
No 402
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=87.96 E-value=0.54 Score=50.10 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=52.4
Q ss_pred eEEeeccccchhhhhhhhcc-CCCeEEEEeecCCCC-CCchhh----hcccc--c-cccccccccCCCCCCcccccccc-
Q 012709 308 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMI----LDRGF--V-GVLHDWCEAFPTYPRTYDLVHAE- 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~-~~~~~~m~v~~~~~~-~~l~~~----~~rgl--~-g~~~~~~~~~~~yp~t~dl~h~~- 377 (458)
..|+|++||.|+++.+|.+. ...- .|+-.+.. .-+..+ -..|+ | -+-+|..... -+.+||.|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 57999999999988776532 1111 23333433 333322 22343 1 1223333221 13579988643
Q ss_pred -----ccccc-----cccCCCCCCc-------chhhhhhcccccCCceEEEec
Q 012709 378 -----GLLSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD 413 (458)
Q Consensus 378 -----~~~~~-----~~~~~~~c~~-------~~~~~e~drilrp~g~~~~~d 413 (458)
|.+.. |. ...-.+ ..+|-++=|+|||||.+++..
T Consensus 327 Pcsg~g~~~r~p~~~~~--~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWK--LTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhc--CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 23221 10 001111 158889999999999999963
No 403
>PLN03075 nicotianamine synthase; Provisional
Probab=87.89 E-value=0.58 Score=47.28 Aligned_cols=140 Identities=12% Similarity=0.117 Sum_probs=71.6
Q ss_pred eeEEeeccccchhhhhhhhcc--CCCeEEEEeecCCCCCCc-hhhh--cccccc----ccccccccCCCCCCcccccccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGTNHL-PMIL--DRGFVG----VLHDWCEAFPTYPRTYDLVHAE 377 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~--~~~~~~m~v~~~~~~~~l-~~~~--~rgl~g----~~~~~~~~~~~yp~t~dl~h~~ 377 (458)
-+.|+|+|||-|++.|.++.. -...-+.|+=.......+ .-.+ +.||=. ..+|--+..+ -...||+|-+.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDlVF~~ 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDVVFLA 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCEEEEe
Confidence 488999999999886665421 112222232211111111 1111 233311 1123333211 12579999976
Q ss_pred ccccccccCCCCCCcchhhhhhcccccCCceEEEeccHH---HHHHHHHHHhhccceEEEEeeccCC-CccEEEEEecc
Q 012709 378 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR---LIESARALTTRLKWDARVIEIESNS-DERLLICQKPF 452 (458)
Q Consensus 378 ~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~---~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~k~~ 452 (458)
.+-.+ ++-.-..+|-.+=|.|||||++++|--.. ++-.+-....-=.|+....-+..++ -.-++|++|.-
T Consensus 203 -ALi~~----dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~ 276 (296)
T PLN03075 203 -ALVGM----DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDEVINSVIIARKPG 276 (296)
T ss_pred -ccccc----ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCCceeeEEEEEeec
Confidence 32221 12233568888999999999999995321 1111111111117886665544333 37888998864
No 404
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=87.86 E-value=0.6 Score=49.64 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred eEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCC-CCCCcccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFP-TYPRTYDLVHAE 377 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~-~yp~t~dl~h~~ 377 (458)
.+|+||+||.||.+.+|.+.- ..- .|+-.|-. .-|..+-+ .|+- -+-.|... ++ ..+.+||.|=.+
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 469999999999988776431 111 34444443 44444322 2441 11233332 22 123578988643
Q ss_pred ccccccccCCCC----C-----C-------cchhhhhhcccccCCceEEEe
Q 012709 378 GLLSLESGHRHR----C-----S-------TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 378 ~~~~~~~~~~~~----c-----~-------~~~~~~e~drilrp~g~~~~~ 412 (458)
---|..-.-... . . -..+|-+.=+.|+|||.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 222211000000 0 0 125677888999999999984
No 405
>KOG2730 consensus Methylase [General function prediction only]
Probab=87.51 E-value=0.59 Score=45.15 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CC--CeEEEeeccCCC----CCCCCCeeEEEe
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL----PYPSLSFDMLHC 114 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~--~~~~~~~d~~~L----pfp~~sFD~I~~ 114 (458)
...|+|.-||.|..+...+.++. .|+++|+++.-+..|+++ |+ ++.|.++|...+ .+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 45899999999999888888764 799999999999999887 33 577888875443 344344556654
Q ss_pred c
Q 012709 115 A 115 (458)
Q Consensus 115 ~ 115 (458)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 4
No 406
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.45 E-value=1.2 Score=38.15 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccC---CC-C-CCCCCeeEEEeccccccccccHHHH
Q 012709 54 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---QL-P-YPSLSFDMLHCARCGVDWDQKDGIL 128 (458)
Q Consensus 54 G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~---~L-p-fp~~sFD~I~~~~~l~~~~~~~~~~ 128 (458)
|.|..+..+++... .+++++|.++.-++.+++.|....+..-+.. .+ . ...+.+|+|+-.-. . ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------~-~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------S-GDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------S-HHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC------c-HHH
Confidence 45777778877532 6999999999999999998844333221110 00 1 23357999984421 1 458
Q ss_pred HHHHHhcccCCcEEEEEeCCC
Q 012709 129 LLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 129 L~ei~RvLkPGG~liis~~~~ 149 (458)
+.+...+|+|+|.+++.....
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHhccCCEEEEEEccC
Confidence 999999999999999998754
No 407
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=87.33 E-value=3.9 Score=40.94 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=82.7
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCc
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHL 345 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l 345 (458)
-.|+.|-+.|-.-.+.. . ... ==-++|.|||.|.-+-+|+.. .+ ---|..++-+ .-+
T Consensus 128 pETEE~V~~Vid~~~~~--~-~~~----------------~~~ildlgtGSGaIslsll~~-L~--~~~v~AiD~S~~Ai 185 (328)
T KOG2904|consen 128 PETEEWVEAVIDALNNS--E-HSK----------------HTHILDLGTGSGAISLSLLHG-LP--QCTVTAIDVSKAAI 185 (328)
T ss_pred ccHHHHHHHHHHHHhhh--h-hcc----------------cceEEEecCCccHHHHHHHhc-CC--CceEEEEeccHHHH
Confidence 46899999986522211 1 111 127999999999998888721 22 1111122211 222
Q ss_pred hhhhc-------ccccccccc--ccccCCCCC---Cccccccccc--cccc----cc------------cCCCCCC--cc
Q 012709 346 PMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVHAEG--LLSL----ES------------GHRHRCS--TL 393 (458)
Q Consensus 346 ~~~~~-------rgl~g~~~~--~~~~~~~yp---~t~dl~h~~~--~~~~----~~------------~~~~~c~--~~ 393 (458)
.++-| -|-|++.|. =-+.|.+|| -+||+|=++- +++. .+ .+...|. +.
T Consensus 186 ~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 186 KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 22222 355888876 234466666 6788765432 1111 10 0011121 11
Q ss_pred hhhhhhcccccCCceEEEe-----ccHHHHHHHHHHHhh-ccceEEEEeeccCCCccEEEEEe
Q 012709 394 DIFTEIDRILRPEGWVIIR-----DTARLIESARALTTR-LKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 394 ~~~~e~drilrp~g~~~~~-----d~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.+..=.=|.|+|||++++. +...++..+..-..- --|.+.+.. +-.+.+++++..+
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~-Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVS-DFAGRPRFVIIHR 327 (328)
T ss_pred HHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheee-cccCCcceEEEEe
Confidence 4555677999999999984 334444443333222 234444442 2333467766544
No 408
>PLN02366 spermidine synthase
Probab=87.19 E-value=1 Score=45.72 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=51.6
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCC------CCCchhhhcccc----cc-ccccccccCCCC-CCcccc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIG------TNHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDL 373 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~------~~~l~~~~~rgl----~g-~~~~~~~~~~~y-p~t~dl 373 (458)
-++||++|||.|+.+..++ +.+ +..+=+|=.+. ...++-+ ..|+ +- ++.|=-+-.... ++.||+
T Consensus 92 pkrVLiIGgG~G~~~rell--k~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIA--RHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCeEEEEcCCccHHHHHHH--hCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 5789999999999999998 443 43222222221 0111111 0111 11 111100001122 368999
Q ss_pred ccccccccccccCCCCCC--cchhhhhhcccccCCceEEEe
Q 012709 374 VHAEGLLSLESGHRHRCS--TLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~--~~~~~~e~drilrp~g~~~~~ 412 (458)
|-.+. ++.. ...-. -..++-.+-|.|+|||.++.+
T Consensus 169 Ii~D~-~dp~---~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPV---GPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCC---CchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 97543 3322 11100 124667889999999999875
No 409
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.05 E-value=1.7 Score=45.15 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=34.5
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~ 86 (458)
..+...|.|+|+|.|.++.+|.-.. +.+|.+||-|....+.|+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 4567899999999999999997543 358999999977666554
No 410
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=86.96 E-value=6.5 Score=38.86 Aligned_cols=106 Identities=19% Similarity=0.288 Sum_probs=65.9
Q ss_pred cCCCCEEEEECCCCchhHHHHhh----cCCccceEEEEcCCHHHHHHHH-----Hc-CCCeEEEeeccC----CCCCCCC
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTL-----ER-GLPAMIGSFASK----QLPYPSL 107 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~----~~~~~~~v~gvD~S~~~i~~A~-----er-~~~~~~~~~d~~----~Lpfp~~ 107 (458)
..++.+.+|+|+|+..-++.|.+ ++. ..+++++|+|...++... +. ++++.-..++.+ .+| ..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~ 152 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RG 152 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CC
Confidence 34568999999999977777654 332 468999999998775322 21 334433344321 233 22
Q ss_pred CeeE-EEeccccccccccH-HHHHHHHHhcccCCcEEEEEeCCCC
Q 012709 108 SFDM-LHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 150 (458)
Q Consensus 108 sFD~-I~~~~~l~~~~~~~-~~~L~ei~RvLkPGG~liis~~~~~ 150 (458)
+--+ ++....+-++.+.+ ..+|.++...|+||-+|++..-..+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2222 22222344555433 3789999999999999999775443
No 411
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=86.85 E-value=3 Score=42.40 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=38.1
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....++|.=||.|..+..++++. +..+|+|+|.++.+++.|+++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 34589999999999999999863 347999999999999999876
No 412
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=86.70 E-value=0.66 Score=48.82 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=65.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc-c---cc-ccccccCCCC---CCccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G---VL-HDWCEAFPTY---PRTYDLV 374 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~-g---~~-~~~~~~~~~y---p~t~dl~ 374 (458)
++|||++||+|+|+-++.. ...- .|+-++.. ..+..+-+ -|+= . ++ .|..+.+..+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~-~ga~---~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALM-GGCS---QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHh-CCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 6799999999999855431 1111 23333433 23332211 1321 0 11 1222222122 2479998
Q ss_pred cccccc-cccccC--CCCCCcchhhhhhcccccCCceEEEec------cHHHHHHHHHHHhhccceEEEEe
Q 012709 375 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRD------TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 375 h~~~~~-~~~~~~--~~~c~~~~~~~e~drilrp~g~~~~~d------~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
=++-=+ +.-+.. .......+++.-.-++|+|||.++.-. ..++.+-+.+-+..-..++++..
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 766332 111000 001234555666678999999999843 24556666666766667777664
No 413
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=86.42 E-value=0.81 Score=44.26 Aligned_cols=135 Identities=15% Similarity=0.213 Sum_probs=73.3
Q ss_pred ceeEEeeccccchhhhhhhhccCCC----eEEEEeecCCCCCCchhhhcccc---cccc--ccccccCC-CCCCcccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKS----VWVMNVVPTIGTNHLPMILDRGF---VGVL--HDWCEAFP-TYPRTYDLVH 375 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~----~~~m~v~~~~~~~~l~~~~~rgl---~g~~--~~~~~~~~-~yp~t~dl~h 375 (458)
.-++||.+|.+.|==|..|. +.-| +.+.=+-|......-...-+-|+ |=++ .|+-+-++ ...-+||||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA-~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMA-LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHH-hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 36899999998884444444 1111 11111111111111112223333 1122 48878777 4677999988
Q ss_pred ccccccccccCCCCCCcchhhhhhcccccCCceEEEe--------------ccHHHHHHHHHHHhhccceEEEEeec-cC
Q 012709 376 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--------------DTARLIESARALTTRLKWDARVIEIE-SN 440 (458)
Q Consensus 376 ~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~--------------d~~~~~~~~~~~~~~~~w~~~~~~~~-~~ 440 (458)
.+. ++-.....+=+.=+.|||||.+|+. +.......++....-+.++-+..-+- ..
T Consensus 138 IDa---------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~ 208 (219)
T COG4122 138 IDA---------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL 208 (219)
T ss_pred EeC---------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec
Confidence 442 3444455666666779999999962 33345555666666666553222110 11
Q ss_pred CCccEEEEEec
Q 012709 441 SDERLLICQKP 451 (458)
Q Consensus 441 ~~~~~~~~~k~ 451 (458)
+ ++++|+.|.
T Consensus 209 g-DGl~v~~k~ 218 (219)
T COG4122 209 G-DGLLLSRKR 218 (219)
T ss_pred C-CceEEEeec
Confidence 2 788998885
No 414
>PRK03612 spermidine synthase; Provisional
Probab=86.26 E-value=1.4 Score=47.97 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=60.8
Q ss_pred eeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCCCCchhhhc-------------ccccccc-ccccccCCCCCCcc
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILD-------------RGFVGVL-HDWCEAFPTYPRTY 371 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~~~l~~~~~-------------rgl~g~~-~~~~~~~~~yp~t~ 371 (458)
-++|+|+|||.|+.+..+. +.+ +=.+=+|=.+. .-+.++-+ ..=+-++ .|=-+-....+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll--~~~~v~~v~~VEid~-~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVL--KYPDVEQVTLVDLDP-AMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHH--hCCCcCeEEEEECCH-HHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4789999999999998887 332 11111111111 11111111 0001111 11111122346789
Q ss_pred ccccccccccccccCCCC-CC--cchhhhhhcccccCCceEEEec-----cHHHHHHHHHHHhhccceEE
Q 012709 372 DLVHAEGLLSLESGHRHR-CS--TLDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWDAR 433 (458)
Q Consensus 372 dl~h~~~~~~~~~~~~~~-c~--~~~~~~e~drilrp~g~~~~~d-----~~~~~~~~~~~~~~~~w~~~ 433 (458)
|+|-.+- .... ... .. -..++-++-|.|+|||.++++. ..+...++.+.++.....+.
T Consensus 375 DvIi~D~-~~~~---~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 375 DVIIVDL-PDPS---NPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CEEEEeC-CCCC---CcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9997662 2211 100 01 1235557789999999999953 24445566666666645433
No 415
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=86.23 E-value=7.7 Score=40.29 Aligned_cols=110 Identities=20% Similarity=0.272 Sum_probs=67.7
Q ss_pred cCCCCEEEEECCCCchhHHHHhhcCCcc---ceEEEEcCCHHHHH---HHHHcCC--CeEEEeeccCCCC---------C
Q 012709 42 LAGVRTILDIGCGYGSFGAHLFSKELLT---MCIANYEASGSQVQ---LTLERGL--PAMIGSFASKQLP---------Y 104 (458)
Q Consensus 42 ~~~~~~VLDVGCG~G~~~~~La~~~~~~---~~v~gvD~S~~~i~---~A~er~~--~~~~~~~d~~~Lp---------f 104 (458)
..+..+|||.-+-+|+=+..|.+..... ..+++-|.+..-+. ...++-. ...+...++...| .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 3456799999999999998888764322 26889999876433 3333321 2223322322222 2
Q ss_pred CCCCeeEEEec-cc-----------ccc--ccc--------cHHHHHHHHHhcccCCcEEEEEeCCCCc
Q 012709 105 PSLSFDMLHCA-RC-----------GVD--WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 151 (458)
Q Consensus 105 p~~sFD~I~~~-~~-----------l~~--~~~--------~~~~~L~ei~RvLkPGG~liis~~~~~~ 151 (458)
....||-|+|- -| +.. |.. -.-.+|....++||+||.++.|+-..++
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 33569999872 11 000 111 1125788999999999999999975543
No 416
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=86.05 E-value=0.86 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.8
Q ss_pred hhhhhhcccccCCceEEEeccH
Q 012709 394 DIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 394 ~~~~e~drilrp~g~~~~~d~~ 415 (458)
.+|.|.-=+||+||.++.-..+
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 6788889999999999865443
No 417
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=86.00 E-value=7 Score=42.31 Aligned_cols=106 Identities=21% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcC---CccceEEEEcCCHHHHHHHHHc----CCC--eEEEeeccCCCCC-----CCCCe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPY-----PSLSF 109 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~---~~~~~v~gvD~S~~~i~~A~er----~~~--~~~~~~d~~~Lpf-----p~~sF 109 (458)
...+|.|--||+|.+.....+.. .....+.|.|+++.....|+-+ +++ +....+++..-|. ..+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 33589999999997766554321 1025799999999999999876 444 3455555444443 23679
Q ss_pred eEEEeccccc--cccc---------------------cH-HHHHHHHHhcccCCcEEEEEeCCC
Q 012709 110 DMLHCARCGV--DWDQ---------------------KD-GILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 110 D~I~~~~~l~--~~~~---------------------~~-~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|.|+++--+- .|.. .. ...++.+...|+|||+..++.+..
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 9999874321 1111 11 357889999999999877776643
No 418
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=85.65 E-value=2.5 Score=42.62 Aligned_cols=105 Identities=12% Similarity=0.032 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc---------CCCeEEEeeccCCC--CCCCCCeeE
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDM 111 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er---------~~~~~~~~~d~~~L--pfp~~sFD~ 111 (458)
.++++||=||-|.|.+.+...+. ....++.-+|+.+..++..++. +..+.+..+|...+ ....+.||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 35689999999999998888775 3345788899988888776654 34566666654332 244688999
Q ss_pred EEecccccccccc----HHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 112 LHCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 112 I~~~~~l~~~~~~----~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
|+.--. -...+. ...++.-+.+.||++|+++...-+.
T Consensus 199 ii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 199 IITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 985321 111111 1257778999999999999987533
No 419
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=85.36 E-value=3.1 Score=43.11 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcC-------CccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~-------~~~~~v~gvD~S~~~i~~A~er 88 (458)
.+..++|+|.|+|.++..+++.. ....++.-+|+|+...+.=+++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34689999999999998887542 2367899999999987665544
No 420
>PLN02476 O-methyltransferase
Probab=84.77 E-value=1.8 Score=43.47 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=68.1
Q ss_pred ceeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhccccc---cc-cccccccCCC-----CCCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---GV-LHDWCEAFPT-----YPRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl~---g~-~~~~~~~~~~-----yp~t~dl 373 (458)
+-++||++|+++|..+.+|.+. +..|.++=.-|....-.-..+-.-|+- =+ ..|-.+-++. .+.+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 3589999999999998888631 112333322221110001112223331 00 1111222222 1357999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEecc-------------H---HHHHHHHHHHhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------A---RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~-------------~---~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
+-.+.==. ....++-..=+.|||||.+|+.+- . .+-+-.+.+...=++++.+...
T Consensus 198 VFIDa~K~---------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKR---------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHH---------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 87554322 233444455589999999997311 0 1122233345556677777654
Q ss_pred ccCCCccEEEEEec
Q 012709 438 ESNSDERLLICQKP 451 (458)
Q Consensus 438 ~~~~~~~~~~~~k~ 451 (458)
. ++++|++|.
T Consensus 269 g----DGl~i~~K~ 278 (278)
T PLN02476 269 G----DGMTICRKR 278 (278)
T ss_pred C----CeeEEEEEC
Confidence 2 678888874
No 421
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=84.76 E-value=1.6 Score=41.66 Aligned_cols=134 Identities=21% Similarity=0.341 Sum_probs=80.3
Q ss_pred EEeeccccchhhhhhhhccCCCeEEEEeecCCCCCCc-hh----hhcccc----cccccccccc-------CCCCCCccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHL-PM----ILDRGF----VGVLHDWCEA-------FPTYPRTYD 372 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~~~l-~~----~~~rgl----~g~~~~~~~~-------~~~yp~t~d 372 (458)
.||.+++|+|--|++... ..|-+ ---|+|-...+ +- +-+-|+ ..+.-|-+.+ -+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 699999999976666642 12211 23466655333 32 345565 2222232222 334678999
Q ss_pred cccccccccccccCCCCCCcchhhhhhcccccCCceEEE------------------------eccH---HHHHHHHHHH
Q 012709 373 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII------------------------RDTA---RLIESARALT 425 (458)
Q Consensus 373 l~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~------------------------~d~~---~~~~~~~~~~ 425 (458)
.|-+.+++-.. .....+-++-+.-|+|+|||.+++ ||.. .-++.|.+++
T Consensus 105 ~i~~~N~lHI~----p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHIS----PWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhc----CHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 98877766422 122346788899999999999996 1211 1157788888
Q ss_pred hhccceEEEEeeccCCCccEEEEEe
Q 012709 426 TRLKWDARVIEIESNSDERLLICQK 450 (458)
Q Consensus 426 ~~~~w~~~~~~~~~~~~~~~~~~~k 450 (458)
.+-..+..-.- +=-...++||++|
T Consensus 181 ~~~GL~l~~~~-~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDI-DMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCccc-ccCCCCeEEEEeC
Confidence 88777643221 1112378999987
No 422
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=84.61 E-value=2.6 Score=44.08 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=66.7
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCCC-CCCCCeeEEEecc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLP-YPSLSFDMLHCAR 116 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~Lp-fp~~sFD~I~~~~ 116 (458)
.-+|||.=+|+|.-+..++.......+|+..|+|+++++..+++ ++. +.+...|+..+= .....||+|-.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-- 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-- 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe--
Confidence 34899999999977777766521235899999999999988776 333 456666655542 24578999973
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
-++- .+..+|..+.+.+|.||.+.++....
T Consensus 128 --DPfG-Sp~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 128 --DPFG-SPAPFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred --CCCC-CccHhHHHHHHHhhcCCEEEEecccc
Confidence 2333 45679999999999999999997644
No 423
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=84.51 E-value=5.2 Score=44.78 Aligned_cols=118 Identities=14% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCEEEEECCCCchhHHHHhhc-------CC----ccceEEEEcCCH---HHHHHHHHc--------------------CC
Q 012709 45 VRTILDIGCGYGSFGAHLFSK-------EL----LTMCIANYEASG---SQVQLTLER--------------------GL 90 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~-------~~----~~~~v~gvD~S~---~~i~~A~er--------------------~~ 90 (458)
.-+|||+|-|+|.+.....+. +. ...+++++|..+ +.+..+.+. +.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 358999999999765554421 11 146889999643 333222210 11
Q ss_pred ----------CeEEEeeccCC-CCCCCCCeeEEEeccccccccccH----HHHHHHHHhcccCCcEEEEEeCCCCccccc
Q 012709 91 ----------PAMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPLTNPQAFL 155 (458)
Q Consensus 91 ----------~~~~~~~d~~~-Lpfp~~sFD~I~~~~~l~~~~~~~----~~~L~ei~RvLkPGG~liis~~~~~~~~~~ 155 (458)
...+..+|+.. ++--...||+++.-. |-+-. +| ..+|+++.|+++|||.|+-...
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~-np~~W~~~~~~~l~~~~~~~~~~~t~t~-------- 207 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAK-NPDMWSPNLFNALARLARPGATLATFTS-------- 207 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCcc-ChhhccHHHHHHHHHHhCCCCEEEEeeh--------
Confidence 22344455432 221125699999642 23322 22 3699999999999999996653
Q ss_pred ccHHHHHHHHHHHHHHHhhccEEEE
Q 012709 156 RNKENQKRWNFVRDFVENLCWELVS 180 (458)
Q Consensus 156 ~~~e~~~~w~~i~~l~~~~~w~~v~ 180 (458)
-..++.-+...+|++..
T Consensus 208 --------a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 208 --------AGFVRRGLQEAGFTVRK 224 (662)
T ss_pred --------HHHHHHHHHHcCCeeee
Confidence 12456666777777654
No 424
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=84.36 E-value=7.8 Score=39.19 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
....+||=.|+| .|..+..+++.. ..++++++.+++-.+.|++.|....+.. ... ..+.+|+++-...
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~---- 232 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP---- 232 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC----
Confidence 345689999975 334445555532 3478899999998999998876433221 111 1245787653221
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+....+.|++||++++...
T Consensus 233 --~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 --A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2378889999999999998774
No 425
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.35 E-value=5.7 Score=37.31 Aligned_cols=137 Identities=21% Similarity=0.344 Sum_probs=77.8
Q ss_pred cchhhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEeeccccch--hhhhhhhccCCCeEEEEeecCCCC--
Q 012709 267 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 342 (458)
Q Consensus 267 ~d~~~w~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~d~~~~~g--~faa~l~~~~~~~~~m~v~~~~~~-- 342 (458)
...+.|.+.+-.=...+. .+... .. +++|+|+|-| |.--|+. -... +|+-.++.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~~~---------------~~-~~lDiGSGaGfPGipLaI~--~p~~---~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLPDF---------------GK-KVLDIGSGAGFPGIPLAIA--RPDL---QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS-CC---------------CS-EEEEETSTTTTTHHHHHHH---TTS---EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhccC---------------Cc-eEEecCCCCCChhHHHHHh--CCCC---cEEEEeCCch
Confidence 345788887765344343 33222 11 6999999866 3333333 1111 23333332
Q ss_pred --CCch-hhhcccc--ccccccccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe---cc
Q 012709 343 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DT 414 (458)
Q Consensus 343 --~~l~-~~~~rgl--~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~---d~ 414 (458)
+=|. ++-+=|| +=++|...|. ..++..||++=| ..=+++..++--+-+.|+|||.++.- +.
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~a----------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTA----------RAVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEE----------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEe----------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555667 6688888888 778899999873 22345555666677899999999884 33
Q ss_pred HHHHHHHHHHHhhccceEEEEe
Q 012709 415 ARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 415 ~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
.+.+++.++-.+.+.++.....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeeec
Confidence 4555666666666666655443
No 426
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.07 E-value=5.8 Score=40.58 Aligned_cols=99 Identities=12% Similarity=0.051 Sum_probs=65.3
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC---------CCCCCCeeEEEe
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLHC 114 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L---------pfp~~sFD~I~~ 114 (458)
.+.+||=+|||+=.+..-+..+.+-..+|+.+|+++.-++.|++-|..+.......... .+....||+.+-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 45699999999644444343333345689999999999999999877655443332211 122244888774
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
..- .+..++.....+|+||.+++++...
T Consensus 249 CsG-------~~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 249 CSG-------AEVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred ccC-------chHHHHHHHHHhccCCEEEEeccCC
Confidence 321 1335667788899999999888644
No 427
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=83.89 E-value=1.9 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=23.6
Q ss_pred chhhhhhcccccCCceEEEec----cHHHHHHHHHHHhh
Q 012709 393 LDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 427 (458)
Q Consensus 393 ~~~~~e~drilrp~g~~~~~d----~~~~~~~~~~~~~~ 427 (458)
..+|-++=|.|||||.+++.. ..+..+.|+.+++.
T Consensus 364 ~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred HHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 377889999999999999752 12333445555544
No 428
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=83.36 E-value=6.3 Score=40.94 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc-----CCCeEEEeeccCCCCCC-CCCeeEEEecccc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYP-SLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er-----~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l 118 (458)
..+|||-=+|+|.-+..++... +...++.-|+|+.+++.++++ +........|+..+=.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----
Confidence 5799999999998888777653 233899999999999998876 23444554554443221 266888752
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~~ 149 (458)
-++- .|..++..+.+.+|.||++.++....
T Consensus 128 DPFG-SPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 128 DPFG-SPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred CCCC-CCchHHHHHHHHhhcCCEEEEEeccc
Confidence 3333 45568999999999999999987655
No 429
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.79 E-value=3.8 Score=38.26 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=33.5
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 87 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e 87 (458)
....|||-=||+|+.+....+.+- +.+|+|+++..++.|.+
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 457999999999999998887664 79999999999998864
No 430
>PHA03411 putative methyltransferase; Provisional
Probab=82.70 E-value=1.1 Score=44.85 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=55.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccccccccccccccCCCC--CCccccccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY--PRTYDLVHAEGLLSLES 384 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl~g~~~~~~~~~~~y--p~t~dl~h~~~~~~~~~ 384 (458)
..|+|+|||.|.|+.++..+... .+|+-++-. ..+...-++ +-. ..=.|.-+..+ +++||+|=++--|-...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~---~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP---EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccC
Confidence 46999999999998888632111 134444433 344433322 110 00012222222 35899988876665421
Q ss_pred cC--CC--CC----------CcchhhhhhcccccCCceEEE
Q 012709 385 GH--RH--RC----------STLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 385 ~~--~~--~c----------~~~~~~~e~drilrp~g~~~~ 411 (458)
.. .. +. .+...+-..-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 10 01 11 245778889999999998876
No 431
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.61 E-value=8 Score=36.69 Aligned_cols=96 Identities=23% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 43 AGVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 43 ~~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
....+||-+|+|. |.....+++.. ..++++++.++...+.+++.+....+...+ ... ....+.+|+++...
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~ 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAV 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECC
Confidence 3457899999985 65666666542 248999999998888887765322211110 000 11235699998642
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. . ...+..+.+.|+++|.++.....
T Consensus 210 ~------~-~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 210 G------G-PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred C------C-HHHHHHHHHhcccCCEEEEEccC
Confidence 1 1 13677788899999999987653
No 432
>PRK10742 putative methyltransferase; Provisional
Probab=82.45 E-value=3.6 Score=40.61 Aligned_cols=68 Identities=15% Similarity=-0.003 Sum_probs=47.3
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHH---Hc-------C----CCeEEEeeccCCC-CCCCCCeeE
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER-------G----LPAMIGSFASKQL-PYPSLSFDM 111 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~---er-------~----~~~~~~~~d~~~L-pfp~~sFD~ 111 (458)
+|||.=+|.|..+..++.+|. +|+++|-|+......+ ++ + .++.+...|.... .-...+||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 899999999999999999876 7999999997655433 22 1 1244555554332 212247999
Q ss_pred EEeccc
Q 012709 112 LHCARC 117 (458)
Q Consensus 112 I~~~~~ 117 (458)
|+.--.
T Consensus 168 VYlDPM 173 (250)
T PRK10742 168 VYLDPM 173 (250)
T ss_pred EEECCC
Confidence 997654
No 433
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.01 E-value=6.8 Score=39.80 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+||=+||| .|.++..++++-....+++++|.+++-++.|++-+. ... . ..+. ....+|+|+-.-. . .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~-~--~~~~-~~~g~d~viD~~G--~-~ 233 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYL-I--DDIP-EDLAVDHAFECVG--G-R 233 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eee-h--hhhh-hccCCcEEEECCC--C-C
Confidence 45789999987 344545555431112378999999988888875322 111 1 1111 1124888884311 0 0
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-...+.+..++|++||++++...
T Consensus 234 -~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 -GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred -ccHHHHHHHHHhCcCCcEEEEEee
Confidence 013478889999999999998764
No 434
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.83 E-value=5.8 Score=42.36 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCCEEEEECCCCchh--HHHHhhcCCccceEEEEcCCHHHHHHHHHc--C-C---CeEEE--eeccCCCCCCC-CCeeEE
Q 012709 44 GVRTILDIGCGYGSF--GAHLFSKELLTMCIANYEASGSQVQLTLER--G-L---PAMIG--SFASKQLPYPS-LSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~--~~~La~~~~~~~~v~gvD~S~~~i~~A~er--~-~---~~~~~--~~d~~~Lpfp~-~sFD~I 112 (458)
.++.++|+|.|.|.- +..+..+. ..-.+..||.|.+|....... + - ...+. +.--..+|.+. ..||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 456788888887643 33333332 234688999999998776543 1 0 11111 12223456544 459999
Q ss_pred EeccccccccccHH--HHHHH-HHhcccCCcEEEEEeCCC
Q 012709 113 HCARCGVDWDQKDG--ILLLE-VDRVLKPGGYFVWTSPLT 149 (458)
Q Consensus 113 ~~~~~l~~~~~~~~--~~L~e-i~RvLkPGG~liis~~~~ 149 (458)
+|++.+++...... ...++ ..+..++||++++.+...
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999888764322 23333 456679999999998755
No 435
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.76 E-value=10 Score=37.79 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=59.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+||-+||| .|.....+++.. ..+++.++.+++..+.+.+.+....+.........-..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~----- 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV----- 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-----
Confidence 34688889987 666655565542 3478999999999888876664322221110000001245898885411
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|+++|.++....
T Consensus 235 -~-~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -S-GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -c-HHHHHHHHHhcccCCEEEEECC
Confidence 1 2367888999999999998764
No 436
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=81.67 E-value=1.9 Score=43.93 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc------c-cccccc-cccCCCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF------V-GVLHDW-CEAFPTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl------~-g~~~~~-~~~~~~yp~t~dl~h~~~ 378 (458)
.+|||+|||.|.++..|.+++. +|+-+|-. +-|.+.-+|.- . +.--+| +..+...+.+||+|=+..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 4799999999999999984333 44555544 45555444420 0 011111 111233357899988777
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~ 410 (458)
++-++. .. .+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---QD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---HH-HHHHHHHHHHhh-cCCEEEE
Confidence 766552 11 122344444443 4666554
No 437
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=81.53 E-value=0.8 Score=43.79 Aligned_cols=133 Identities=18% Similarity=0.265 Sum_probs=69.7
Q ss_pred ceeEEeeccccchhhhhhhhcc---CCCeEEEEeecCCCCCCchhhhcccc---cccc-ccccccCCCC-----CCcccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPTY-----PRTYDL 373 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~---~~~~~~m~v~~~~~~~~l~~~~~rgl---~g~~-~~~~~~~~~y-----p~t~dl 373 (458)
+-|+||.+|+++|==|.+|.+. +-.|+++-.-|....-.-..+-.-|+ |-+. .|..+-+++. +.+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4799999999998655555421 23455554433222111112222344 2222 2333333321 468999
Q ss_pred ccccccccccccCCCCCCcchhhhhhcccccCCceEEEeccH----------------HHHHHHHHHHhhccceEEEEee
Q 012709 374 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~----------------~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
|-.+.-=+.| ...+-..=+.|||||.+|+.+.. .+-+-.+.|.+-=+.++.+...
T Consensus 125 VFiDa~K~~y---------~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 125 VFIDADKRNY---------LEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEESTGGGH---------HHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred EEEcccccch---------hhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 9866533333 22333344899999999984221 1223334445555666666643
Q ss_pred ccCCCccEEEEEec
Q 012709 438 ESNSDERLLICQKP 451 (458)
Q Consensus 438 ~~~~~~~~~~~~k~ 451 (458)
. ++++|++|.
T Consensus 196 g----dGl~l~~K~ 205 (205)
T PF01596_consen 196 G----DGLTLARKR 205 (205)
T ss_dssp T----TEEEEEEE-
T ss_pred C----CeeEEEEEC
Confidence 2 789999884
No 438
>PRK11524 putative methyltransferase; Provisional
Probab=81.43 E-value=1.3 Score=44.27 Aligned_cols=53 Identities=23% Similarity=0.136 Sum_probs=33.7
Q ss_pred EEeeccCCC--CCCCCCeeEEEeccccc---c-------cc-----ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 94 IGSFASKQL--PYPSLSFDMLHCARCGV---D-------WD-----QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 94 ~~~~d~~~L--pfp~~sFD~I~~~~~l~---~-------~~-----~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
+..+|+... .+++++||+|++.--.. . +. .-....+.++.|+|||||.+++..
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 444554442 35678899999853211 0 10 001358899999999999999864
No 439
>PRK11524 putative methyltransferase; Provisional
Probab=80.96 E-value=4.9 Score=40.15 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 43 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 43 ~~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
..++.|||-=||+|+.+....+.+- +++|+|++++-++.|++|
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHH
Confidence 4567999999999999988877653 899999999999999988
No 440
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=80.69 E-value=11 Score=37.76 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=59.3
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeecc---CCCCCCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFAS---KQLPYPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~---~~Lpfp~~sFD~I~~~~~l 118 (458)
...+||-.|||. |..+..+++.. .. .+++++.++...+.+++.+... +..... ..+....+.+|+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~-vi~~~~~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADE-TVNLARDPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCE-EEcCCchhhhhhhccCCCccEEEECCC-
Confidence 457888888874 55555566542 23 6889999999888777766432 221111 112112245899985421
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|+++|+++....
T Consensus 241 -----~-~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -----A-PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 1 2367889999999999997653
No 441
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=80.69 E-value=26 Score=32.25 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=73.7
Q ss_pred EECCCCchhHHHHhhcCCccceEEE--EcCCHHHHH----------HHHHcCCCeEEEeeccCCCC----CCCCCeeEEE
Q 012709 50 DIGCGYGSFGAHLFSKELLTMCIAN--YEASGSQVQ----------LTLERGLPAMIGSFASKQLP----YPSLSFDMLH 113 (458)
Q Consensus 50 DVGCG~G~~~~~La~~~~~~~~v~g--vD~S~~~i~----------~A~er~~~~~~~~~d~~~Lp----fp~~sFD~I~ 113 (458)
=||=|.=+|+..|++......++++ .|..++..+ ..++.|..+.+ ..|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 3677777888888886432445554 555443332 22333544443 34555553 3568899999
Q ss_pred ecccccccc-------cc-------HHHHHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEE
Q 012709 114 CARCGVDWD-------QK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 179 (458)
Q Consensus 114 ~~~~l~~~~-------~~-------~~~~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v 179 (458)
-++- |.. .+ ...+++.+.++|+++|.+.++-....+ ...|+ ++.+++..++.++
T Consensus 81 FNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~-i~~lA~~~gl~l~ 148 (166)
T PF10354_consen 81 FNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWN-IEELAAEAGLVLV 148 (166)
T ss_pred EeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Ccccc-HHHHHHhcCCEEE
Confidence 8753 322 01 125788899999999999998753322 12355 6688888888776
Q ss_pred Ee
Q 012709 180 SQ 181 (458)
Q Consensus 180 ~~ 181 (458)
..
T Consensus 149 ~~ 150 (166)
T PF10354_consen 149 RK 150 (166)
T ss_pred EE
Confidence 54
No 442
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=79.86 E-value=13 Score=36.89 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccce-EEEEcCCHHHHHHHHHcCCCeEEEeeccCCC----CCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQL----PYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~-v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L----pfp~~sFD~I~~~~~ 117 (458)
...+||-+|+| .|.....+++.. ..+ ++.++.+++..+.+++.+.. .+...+.... ....+.+|+|+....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 44689999865 345555555542 234 78889999988888777654 2222111110 113356999986421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
....+.++.+.|+++|+++....
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEec
Confidence 13478888999999999988764
No 443
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=79.17 E-value=9.2 Score=38.87 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcC---CHHHHHHHHHcCCCeEEEeeccCCC--CCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEA---SGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~---S~~~i~~A~er~~~~~~~~~d~~~L--pfp~~sFD~I~~~~~ 117 (458)
...+||=+|+| .|.++..+++.. ..++++++. ++.-.+.+++.|... ........ ....+.||+|+-.-.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC
Confidence 34689999987 356666666542 337888876 677888888776542 21111110 001245888885421
Q ss_pred cccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 118 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 118 l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.+..++|++||.+++...
T Consensus 248 ------~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ------V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------C-HHHHHHHHHHccCCcEEEEEec
Confidence 1 2378889999999999988764
No 444
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=78.90 E-value=1.3 Score=43.47 Aligned_cols=100 Identities=16% Similarity=0.245 Sum_probs=62.9
Q ss_pred EEeeccccchhhhhhhhccCCC--eEEEEeecCCCCCCchhhhc-------cccccccccccccC---CCCCCccccccc
Q 012709 309 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMILD-------RGFVGVLHDWCEAF---PTYPRTYDLVHA 376 (458)
Q Consensus 309 ~~~d~~~~~g~faa~l~~~~~~--~~~m~v~~~~~~~~l~~~~~-------rgl~g~~~~~~~~~---~~yp~t~dl~h~ 376 (458)
.++.+|||.|.--=-|+..+.+ +-||.. +. +++-+-+.-+ |. -...+|.+.+= +.-+-+.|.+-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEE
Confidence 8999999999766566544444 444422 00 1121211111 11 22333433321 333479999999
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccH
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 415 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~ 415 (458)
-.+||.++ .-.+..++=..-|+|+|||.+++||=-
T Consensus 151 IFvLSAi~----pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 151 IFVLSAIH----PEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEEeccC----hHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 99999984 334778888999999999999999743
No 445
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=77.62 E-value=6.6 Score=38.00 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=42.7
Q ss_pred eccccccCc--cchhhHHHHHHHHHhhhhccccccCCCCEEEEECCCCchhHHHHhhcC-CccceEEEEcCCHHHHHHHH
Q 012709 10 SFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTL 86 (458)
Q Consensus 10 ~F~~~~~~f--d~~~~~~~~l~~~l~~~~~~l~~~~~~~~VLDVGCG~G~~~~~La~~~-~~~~~v~gvD~S~~~i~~A~ 86 (458)
.|.++.-.| .+...+.-.++..+-.+.-.+....++-++-|--||.|.+.-.+.-.. -.-..|.+.|+++++++.|+
T Consensus 15 DfAsG~VL~sApG~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~ 94 (246)
T PF11599_consen 15 DFASGRVLYSAPGFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR 94 (246)
T ss_dssp CCSTTTSS--BTTB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH
T ss_pred hhcCCeEEecCCCCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH
Confidence 455554444 233444444444333332223334566799999999997665543211 11247999999999999998
Q ss_pred Hc
Q 012709 87 ER 88 (458)
Q Consensus 87 er 88 (458)
++
T Consensus 95 kN 96 (246)
T PF11599_consen 95 KN 96 (246)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 446
>PRK13699 putative methylase; Provisional
Probab=77.30 E-value=8 Score=37.45 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=36.8
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
.+..|||-=||+|+.+....+.+- ++.|+|+++.-.+.|.+|
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 456999999999999998887664 789999999999998877
No 447
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=77.29 E-value=6.7 Score=41.76 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=59.0
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhc----cccc---cccccccccCCC--C-CCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPT--Y-PRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~----rgl~---g~~~~~~~~~~~--y-p~t~dl~h~ 376 (458)
..|+|++||.|.|+.+|. ..- ..|+-++.. ..+..+-+ .|+- =+-.|+-+.+.. + +.+||+|-+
T Consensus 299 ~~VLDlgcGtG~~sl~la--~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLA--RQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CEEEEEeccCCHHHHHHH--HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 479999999999999998 332 234444543 33333222 2321 112233222222 1 256888742
Q ss_pred cccccccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 377 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
+ -.|.++..++-.+-+ |.|++.+++.=++..+.+=-+.+..--|++.
T Consensus 374 d---------PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~ 420 (443)
T PRK13168 374 D---------PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEAGYRLK 420 (443)
T ss_pred C---------cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhCCcEEE
Confidence 2 123334445544444 5899999998666655443333333346543
No 448
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.22 E-value=11 Score=38.84 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=63.5
Q ss_pred CEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcC-CCeEEEeecc----CCCCCCC-CCeeEEEecccc
Q 012709 46 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFAS----KQLPYPS-LSFDMLHCARCG 118 (458)
Q Consensus 46 ~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~-~~~~~~~~d~----~~Lpfp~-~sFD~I~~~~~l 118 (458)
.+|+=+|||+ |.++..+++.. ....|+.+|.++.-++.|++.+ ....+..... ..+.... ..||+++=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3899999995 66666666542 3468999999999999999853 2222221110 0001112 36999985422
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
. ..++.++.+++||||.+++....
T Consensus 248 -----~-~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 -----S-PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred -----C-HHHHHHHHHHhcCCCEEEEEecc
Confidence 1 34899999999999999998864
No 449
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=76.99 E-value=2.2 Score=41.36 Aligned_cols=136 Identities=17% Similarity=0.185 Sum_probs=84.3
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhcccc-----ccccccccccCCCCCCcccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-----VGVLHDWCEAFPTYPRTYDLVHAEGL 379 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rgl-----~g~~~~~~~~~~~yp~t~dl~h~~~~ 379 (458)
..|+|.|+|||.|---+-|..+ -|.=+ |.=.|++ +-|--+.+|+. .|=+++||-+-+ .|||-|+-+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfaNAv 101 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFANAV 101 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhhhhh
Confidence 7999999999999877777643 22212 2223333 55666666764 688899997655 799999999
Q ss_pred ccccccCCCCCCcchhhhhhcccccCCceEEEe--ccHHH--HHHHHHHHhhccceEEEEeec----------------c
Q 012709 380 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARL--IESARALTTRLKWDARVIEIE----------------S 439 (458)
Q Consensus 380 ~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~--d~~~~--~~~~~~~~~~~~w~~~~~~~~----------------~ 439 (458)
|.-+- .+.- +|--.=--|+|||.+-++ |+.+. =.-+++.+++.-|.....+.- .
T Consensus 102 lqWlp--dH~~----ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 102 LQWLP--DHPE----LLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhcc--ccHH----HHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 97552 1122 222222358999999986 33221 234566666666764443310 0
Q ss_pred CCCccEEEEEeccccc
Q 012709 440 NSDERLLICQKPFFKR 455 (458)
Q Consensus 440 ~~~~~~~~~~k~~w~~ 455 (458)
....+|=||.+.|-.+
T Consensus 176 ~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 176 PLACRVDIWHTTYYHQ 191 (257)
T ss_pred cccceeeeeeeecccc
Confidence 1136777888877654
No 450
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=76.89 E-value=15 Score=37.32 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----C-CCCCCeeEEEec
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----p-fp~~sFD~I~~~ 115 (458)
...+||=.||| .|..+..+++.. .. +++++|.++...+.+++.+....+. ...... . .....+|+|+-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 45689988875 345555555542 23 5899999999999998877532221 111110 0 122358988743
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
-. . ...+.+..+.|++||++++...
T Consensus 253 ~g------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 253 VG------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CC------C-HHHHHHHHHHhccCCEEEEECC
Confidence 11 1 2367788899999999998875
No 451
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=76.63 E-value=22 Score=35.43 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=61.9
Q ss_pred CCCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEec
Q 012709 43 AGVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 115 (458)
Q Consensus 43 ~~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~ 115 (458)
....+||=.|+ |.|..+..+++.. ..++++++.+++..+.+++.|....+..-+.... ....+.+|+|+-.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 34568988885 4677777777652 3478899999999999987776432221110011 0122468988853
Q ss_pred cccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
- ....+.+..++|++||+++....
T Consensus 215 ~--------G~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 215 V--------GGEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred C--------CHHHHHHHHHHhCcCcEEEEecc
Confidence 1 12356888999999999998753
No 452
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=76.57 E-value=22 Score=35.23 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=74.3
Q ss_pred EEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC---CCCCCeeEEEeccccccc--
Q 012709 47 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVDW-- 121 (458)
Q Consensus 47 ~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp---fp~~sFD~I~~~~~l~~~-- 121 (458)
+++|+=||-|.+..-+.+.|+. .+.++|+++.+.+.-+.+.. .....|+..+. ++. .+|+++...-=-.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 6999999999999999988853 67899999998887777644 66667776664 453 59999975210111
Q ss_pred ------cccHH-HHHH---HHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 122 ------DQKDG-ILLL---EVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 122 ------~~~~~-~~L~---ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
..++. .++. ++.+.++|.- ++.+...... .......++.+...++++++.....
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~l~----~~~~~~~~~~i~~~l~~lGY~v~~~ 140 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPGLL----SSKNGEVFKEILEELEELGYNVQWR 140 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGGGG----TGGGHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccccccccccchhhHHHHHHHhhccceE--EEecccceee----ccccccccccccccccccceeehhc
Confidence 11222 2343 4445567854 3334322111 1122245677777788888776543
No 453
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=75.76 E-value=4 Score=43.17 Aligned_cols=112 Identities=17% Similarity=0.163 Sum_probs=60.2
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhh----cccc--c-cccccccccCCCC---CCccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--V-GVLHDWCEAFPTY---PRTYDLVHA 376 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~----~rgl--~-g~~~~~~~~~~~y---p~t~dl~h~ 376 (458)
-.|+|++||+|.|+..|......| +-++.. +-+..+- ..|+ + -+..|..+.++.+ ..+||+|-.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V-----~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSV-----VGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEE-----EEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 469999999999999998433333 333332 2222111 1232 1 1222333322322 135777652
Q ss_pred cccccccccCCCCCCc-chhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEE
Q 012709 377 EGLLSLESGHRHRCST-LDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 434 (458)
Q Consensus 377 ~~~~~~~~~~~~~c~~-~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~ 434 (458)
+ -.|-++ ..++-++.+ |+|++.+++.-++..+.+--+.+..-.|++..
T Consensus 369 ----d-----PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~ 417 (431)
T TIGR00479 369 ----D-----PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITW 417 (431)
T ss_pred ----C-----cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEE
Confidence 2 123332 233334444 88999999997887776666555555666443
No 454
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=75.17 E-value=12 Score=38.35 Aligned_cols=94 Identities=13% Similarity=0.037 Sum_probs=59.3
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
...+||=.|+| .|..+..+++.. .. .|+++|.++...+.+++.|....+...+ ..+ ....+.+|+|+-.-
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECC
Confidence 34678888976 345555555532 23 5899999999999998877643222111 110 01123589888531
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. . ...+....+.|+++|.+++...
T Consensus 268 G------~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 G------S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred C------C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 1 2467788899999999998764
No 455
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=74.65 E-value=2.3 Score=40.86 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=31.8
Q ss_pred CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEEe----ccHHHHHHH
Q 012709 369 RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR----DTARLIESA 421 (458)
Q Consensus 369 ~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~----d~~~~~~~~ 421 (458)
-+||.|=+.-++ |+--+....|=|+-|+|||||.+|+= ..-++++++
T Consensus 144 ~s~DtVV~TlvL------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 144 GSYDTVVCTLVL------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred CCeeeEEEEEEE------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 478887643332 33334457899999999999999984 334555554
No 456
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=74.47 E-value=3.9 Score=40.03 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=32.2
Q ss_pred CCEEEEECCCCchhHHHHhhc---C----CccceEEEEcCCHHHHHHHHHc
Q 012709 45 VRTILDIGCGYGSFGAHLFSK---E----LLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~---~----~~~~~v~gvD~S~~~i~~A~er 88 (458)
+-+|+|+|+|+|.++..+++. . ....+++-+|+|+.+.+.-+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 358999999999999888653 1 1236899999999988776666
No 457
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=74.36 E-value=22 Score=36.22 Aligned_cols=95 Identities=14% Similarity=0.080 Sum_probs=62.0
Q ss_pred CCCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHH-HcCCCeEEEeeccCCC-----CCCCCCeeEEEe
Q 012709 43 AGVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQL-----PYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~-er~~~~~~~~~d~~~L-----pfp~~sFD~I~~ 114 (458)
....+||=.|+ |.|..+..+++.. ..++++++.+++..+.++ +.|....+...+...+ ....+.+|+|+-
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 34578999998 3777777777652 347899999998888876 5665433221100010 011246898885
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. ...+.+..+.|++||++++...
T Consensus 235 ~vG--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 235 NVG--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CCC--------HHHHHHHHHHhccCCEEEEECc
Confidence 311 2467889999999999998764
No 458
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=74.17 E-value=16 Score=36.62 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCEEEEECCC-CchhHHHHhhcCCccce-EEEEcCCHHHHHHHHHcCCCeEEEeecc--CCC-C-CCCCCeeEEEecccc
Q 012709 45 VRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFAS--KQL-P-YPSLSFDMLHCARCG 118 (458)
Q Consensus 45 ~~~VLDVGCG-~G~~~~~La~~~~~~~~-v~gvD~S~~~i~~A~er~~~~~~~~~d~--~~L-p-fp~~sFD~I~~~~~l 118 (458)
..+||=+|+| .|..+..+++.. ..+ +++++.+++..+.+++.+....+..-+. ..+ . .....||+|+-.-.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 5688888875 334444455432 235 8999999999999988775332211110 001 1 12246899984321
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.+..+.|+++|.+++...
T Consensus 241 -----~-~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -----N-TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 1 2356778899999999998764
No 459
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.14 E-value=0.78 Score=42.06 Aligned_cols=47 Identities=26% Similarity=0.265 Sum_probs=36.2
Q ss_pred cccccCCCCCCccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE
Q 012709 359 DWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 359 ~~~~~~~~yp~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~ 411 (458)
+|-.+|.+ ++-|+|-|.+++.++. - -.....+=|--|+|||||++-+
T Consensus 38 s~e~~F~d--ns~d~iyaeHvlEHlt---~-~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 38 SNESMFED--NSVDAIYAEHVLEHLT---Y-DEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred hhhccCCC--cchHHHHHHHHHHHHh---H-HHHHHHHHHHHHHhCcCcEEEE
Confidence 34556665 9999999999998862 2 1233568899999999999987
No 460
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.84 E-value=16 Score=37.01 Aligned_cols=95 Identities=9% Similarity=0.085 Sum_probs=57.7
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc--CCC-----C-CCCCCee----
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL-----P-YPSLSFD---- 110 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~--~~L-----p-fp~~sFD---- 110 (458)
...+||=.|||. |..+..+++.. ..+++++|.+++.++++++.+....+...+. ..+ . .....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 457899999953 55555555542 2378999999999999988775432221110 000 0 0112344
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 111 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 111 ~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+|+-. ... ...+....++|++||++++...
T Consensus 244 ~v~d~------~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 244 KIFEC------SGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEEEC------CCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 44421 111 2467778889999999999875
No 461
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.77 E-value=15 Score=36.13 Aligned_cols=95 Identities=17% Similarity=0.113 Sum_probs=59.0
Q ss_pred CCCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc-CCC-C-CCCCCeeEEEecccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-P-YPSLSFDMLHCARCG 118 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~-~~L-p-fp~~sFD~I~~~~~l 118 (458)
...+||=+|+| .|..+..+++. +. ..++.+|.++.-.+.|++.+....+...+. ..+ . .....+|+|+-.-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC-
Confidence 45688888886 34444555543 32 248888999998899988775332211110 000 0 12235888875321
Q ss_pred ccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 119 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 119 ~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|+|+|++++...
T Consensus 197 -----~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 -----A-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred -----C-hHHHHHHHHHhcCCCEEEEecc
Confidence 1 3468888999999999998774
No 462
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=73.69 E-value=10 Score=41.39 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC-----------C--C------
Q 012709 44 GVRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----------L--P------ 103 (458)
Q Consensus 44 ~~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~-----------L--p------ 103 (458)
.+.+||=+|||.- ..+..+++. ....++.+|.+++.++.+++.+... ...+... + +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHH
Confidence 3579999999965 444444443 1337999999999888888765432 1111100 0 0
Q ss_pred --CC--CCCeeEEEeccccccccccHHHHHHHHHhcccCCcEEEEE
Q 012709 104 --YP--SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 145 (458)
Q Consensus 104 --fp--~~sFD~I~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis 145 (458)
++ -..+|+|+++ ++.+-...|.-+.+++.+.+|||+.++-.
T Consensus 239 ~~~~e~~~~~DIVI~T-alipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 239 ELFAAQAKEVDIIITT-ALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHhCCCCEEEEC-cccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 11 2469999877 44555445555778899999999997743
No 463
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=73.20 E-value=22 Score=34.31 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=57.5
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccce-EEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~-v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
...+||=.|||. |..+..+++.. ..+ +++++.+++..+.+++.+..-.+... ..-......+|+|+..-.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVAAD--TADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCcccccc--chhhhcCCCCCEEEEccC----
Confidence 456788888763 44555555532 235 89999999998888887621111111 100113346898885311
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
....+.+..+.|+++|.++....
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEec
Confidence 12367888999999999998764
No 464
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=73.20 E-value=17 Score=36.34 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 45 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
.++||=+||| .|.++..+++. +. ..++.+|.++..++.|.+... .+.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~--~~v~~~~~~~~rl~~a~~~~~------i~~~~~--~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGG--SPPAVWETNPRRRDGATGYEV------LDPEKD--PRRDYRAIYDASG----- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHhhhhccc------cChhhc--cCCCCCEEEECCC-----
Confidence 4578888987 56666666654 32 246778998887777754321 111110 2246898885421
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.++.+.|++||++++...
T Consensus 210 -~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2467888999999999998774
No 465
>PLN02823 spermine synthase
Probab=72.17 E-value=12 Score=38.62 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=66.1
Q ss_pred eeEEeeccccchhhhhhhhccC-CCeEEEEeecCCCC------------------CCchhhhccccccccccccccCCCC
Q 012709 307 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT------------------NHLPMILDRGFVGVLHDWCEAFPTY 367 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~-~~~~~m~v~~~~~~------------------~~l~~~~~rgl~g~~~~~~~~~~~y 367 (458)
-|+||-+|+|.|+.+..++ + .++-.+-+|=.+.. ..+.++.+-|+- | ...-
T Consensus 104 pk~VLiiGgG~G~~~re~l--~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~-----~---L~~~ 173 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVL--RHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA-----E---LEKR 173 (336)
T ss_pred CCEEEEECCCchHHHHHHH--hCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH-----H---HhhC
Confidence 5899999999999988777 4 33433333332221 111222222221 1 1122
Q ss_pred CCccccccccccccccccCCCCCC---cchhhh-hhcccccCCceEEEec-------cHHHHHHHHHHHhhccceEEEEe
Q 012709 368 PRTYDLVHAEGLLSLESGHRHRCS---TLDIFT-EIDRILRPEGWVIIRD-------TARLIESARALTTRLKWDARVIE 436 (458)
Q Consensus 368 p~t~dl~h~~~~~~~~~~~~~~c~---~~~~~~-e~drilrp~g~~~~~d-------~~~~~~~~~~~~~~~~w~~~~~~ 436 (458)
+..||+|=.+ +++... ...|. -...+- .+-|.|+|||.++++- ..+....+.+.+++.--.+....
T Consensus 174 ~~~yDvIi~D-~~dp~~--~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~ 250 (336)
T PLN02823 174 DEKFDVIIGD-LADPVE--GGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYT 250 (336)
T ss_pred CCCccEEEec-CCCccc--cCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEE
Confidence 4689999877 344321 01121 112333 5789999999999762 23333444444444444444443
Q ss_pred ecc---CCCccEEEEEec
Q 012709 437 IES---NSDERLLICQKP 451 (458)
Q Consensus 437 ~~~---~~~~~~~~~~k~ 451 (458)
... ++.-.++++.|.
T Consensus 251 ~~vPsf~~~w~f~~aS~~ 268 (336)
T PLN02823 251 AHVPSFADTWGWVMASDH 268 (336)
T ss_pred eecCCCCCceEEEEEeCC
Confidence 221 112456666553
No 466
>PRK13699 putative methylase; Provisional
Probab=71.59 E-value=5.9 Score=38.36 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=16.6
Q ss_pred chhhhhhcccccCCceEEE
Q 012709 393 LDIFTEIDRILRPEGWVII 411 (458)
Q Consensus 393 ~~~~~e~drilrp~g~~~~ 411 (458)
..++-|+-|||+|||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 3578999999999999986
No 467
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=71.00 E-value=4.7 Score=41.45 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=52.1
Q ss_pred eEEeeccccchh---hhhhhhccCCCeEEEEeecCCCCC----Cchhhhcccc-------ccccccccccCCCCCCcccc
Q 012709 308 RNVLDMNAHFGG---FNSALLEKGKSVWVMNVVPTIGTN----HLPMILDRGF-------VGVLHDWCEAFPTYPRTYDL 373 (458)
Q Consensus 308 r~~~d~~~~~g~---faa~l~~~~~~~~~m~v~~~~~~~----~l~~~~~rgl-------~g~~~~~~~~~~~yp~t~dl 373 (458)
++|||.|||.|- |||--= .. .|..++.++ .-.+|.+-|| .|-.++--. | .--.|.
T Consensus 62 K~VlDVGcGtGILS~F~akAG----A~---~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~L--P--~eKVDi 130 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAG----AR---KVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIEL--P--VEKVDI 130 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhC----cc---eEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEec--C--ccceeE
Confidence 899999999995 333222 22 333444432 3346777776 344444422 2 245666
Q ss_pred ccccccccccccCCCCCCc-----chhhhhhcccccCCceEE
Q 012709 374 VHAEGLLSLESGHRHRCST-----LDIFTEIDRILRPEGWVI 410 (458)
Q Consensus 374 ~h~~~~~~~~~~~~~~c~~-----~~~~~e~drilrp~g~~~ 410 (458)
|= |.| ..-|.+ ..+|.-=||-|.|||.++
T Consensus 131 Iv-----SEW---MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IV-----SEW---MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred Ee-----ehh---hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 54 555 555554 367888899999999887
No 468
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=70.85 E-value=4 Score=39.92 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.3
Q ss_pred eeEEeeccccchhhhhhhhccCCC
Q 012709 307 VRNVLDMNAHFGGFNSALLEKGKS 330 (458)
Q Consensus 307 ~r~~~d~~~~~g~faa~l~~~~~~ 330 (458)
-.+|+|+|||.|.+.++|.++...
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~ 53 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKK 53 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCc
Confidence 478999999999999999955444
No 469
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=69.19 E-value=25 Score=35.70 Aligned_cols=44 Identities=14% Similarity=0.099 Sum_probs=39.4
Q ss_pred CCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHc
Q 012709 45 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 45 ~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
....+|.=-|.|..+.+++++.....+++++|-.+.+++.|+++
T Consensus 24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 36899999999999999999875556799999999999999987
No 470
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.05 E-value=31 Score=34.47 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=59.9
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCC----C--CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L--PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~----L--pfp~~sFD~I~~~~ 116 (458)
...+||-.|+|. |..+..+++. .+.+++++..+++..+.+++.+..-.+ ...... + -.+...+|+++...
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld~~ 235 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLRELTDGEGADVVIDAT 235 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHHhCCCCCCEEEECC
Confidence 446889998763 6666666664 234788888888888888776632222 111111 0 02334589998642
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ....+.++.+.|+++|.++....
T Consensus 236 g-------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 236 G-------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred C-------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 1 13467889999999999987654
No 471
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=68.23 E-value=14 Score=37.11 Aligned_cols=91 Identities=15% Similarity=0.258 Sum_probs=57.9
Q ss_pred ceeEEeeccccchhhhhhhhccCCC-eEEEEeecCCCCCCchhhhccccccccccccc-c------------CCCCCCcc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE-A------------FPTYPRTY 371 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~-~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~-~------------~~~yp~t~ 371 (458)
..|.||=+|-|-||.+-.++ +.+ +=-+=+|=. |--=+.+.|..++..|.++. | ...++.+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevl--kh~~ve~i~~VEI---D~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~f 150 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVL--KHLPVERITMVEI---DPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKF 150 (282)
T ss_pred CCCeEEEECCCccHHHHHHH--hcCCcceEEEEEc---CHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcC
Confidence 45899999999999999998 443 211111111 22235566777777775544 1 13456689
Q ss_pred cccccc---------ccccccccCCCCCCcchhhhhhcccccCCceEEEe
Q 012709 372 DLVHAE---------GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 412 (458)
Q Consensus 372 dl~h~~---------~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~ 412 (458)
|+|=.+ +||+. ...=...|.|+|+|.++.+
T Consensus 151 DvIi~D~tdp~gp~~~Lft~-----------eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 151 DVIIVDSTDPVGPAEALFTE-----------EFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CEEEEcCCCCCCcccccCCH-----------HHHHHHHHhcCCCcEEEEe
Confidence 998532 22322 2444578999999999998
No 472
>PLN02740 Alcohol dehydrogenase-like
Probab=67.88 E-value=26 Score=36.18 Aligned_cols=95 Identities=16% Similarity=0.054 Sum_probs=58.9
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeeccC-CC-----CCCCCCeeEEEec
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCA 115 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~~-~L-----pfp~~sFD~I~~~ 115 (458)
...+||=+||| .|..+..+++.. .. .|+++|.+++.++.+++.|....+...+.. .+ .+..+.+|+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 45689999986 344444455432 23 589999999999999887764332211100 00 1112368988854
Q ss_pred cccccccccHHHHHHHHHhcccCC-cEEEEEeC
Q 012709 116 RCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 147 (458)
Q Consensus 116 ~~l~~~~~~~~~~L~ei~RvLkPG-G~liis~~ 147 (458)
-. . ...+.+..+.+++| |.+++...
T Consensus 276 ~G------~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 AG------N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred CC------C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 21 1 24677888899997 99888764
No 473
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.80 E-value=15 Score=32.01 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=48.9
Q ss_pred CCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~ 122 (458)
..+|.|||-|.= ..+..|+++|+ .++++|+.+. .|. ..+.+..-|..+.... -...|+|.|.++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~---dv~atDI~~~---~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiRp----p 80 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF---DVLATDINEK---TAP---EGLRFVVDDITNPNISIYEGADLIYSIRP----P 80 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC---cEEEEecccc---cCc---ccceEEEccCCCccHHHhhCccceeecCC----C
Confidence 348999999865 56677777776 8999999987 222 2344555554443211 134799998765 2
Q ss_pred ccHHHHHHHHHhccc
Q 012709 123 QKDGILLLEVDRVLK 137 (458)
Q Consensus 123 ~~~~~~L~ei~RvLk 137 (458)
.+....+.++.+.++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 222344555555443
No 474
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=67.72 E-value=13 Score=36.46 Aligned_cols=72 Identities=22% Similarity=0.145 Sum_probs=41.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHH---HHHHc---C--C------CeEEEeeccCC-CCCCCCCee
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER---G--L------PAMIGSFASKQ-LPYPSLSFD 110 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~---~A~er---~--~------~~~~~~~d~~~-Lpfp~~sFD 110 (458)
.+|||.=+|-|.-+..++..|. +|+++|-|+-+.. .+.++ . . ++++..+|... |..++.+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 4899999999999988887664 8999999986533 22222 1 1 45677777555 456678999
Q ss_pred EEEecccccc
Q 012709 111 MLHCARCGVD 120 (458)
Q Consensus 111 ~I~~~~~l~~ 120 (458)
+|+.--.+-+
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9998655433
No 475
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=67.22 E-value=19 Score=36.85 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=53.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHH-HHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQV-QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 121 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i-~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~ 121 (458)
..++||=.|+| .|..+..+++.. ..+++.++.++... +.+++.|....+...+...+.-..+.+|+|+-.-.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g---- 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS---- 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC----
Confidence 34678889886 445555555542 33677777776543 44555565322211110011000124788874321
Q ss_pred cccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 122 DQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 122 ~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.+..+.|++||.++....
T Consensus 257 --~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 2367888999999999998764
No 476
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=67.02 E-value=5.6 Score=36.21 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=47.3
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhhhccc----cccccccccccCCCCCC-cccccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPR-TYDLVHAEGLLS 381 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~~~rg----l~g~~~~~~~~~~~yp~-t~dl~h~~~~~~ 381 (458)
.+|+|+|||.|.++..|.++... |+-++-. ..+..+-++- =+-+++.=.+.++ ++. .||.+=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~~-----v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAAR-----VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCCe-----EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 57999999999999999944333 3333332 2333332221 0112221112222 122 467664443332
Q ss_pred ccccCCCCCCcchhhhhhcccccCCceEEEecc
Q 012709 382 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 414 (458)
Q Consensus 382 ~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~ 414 (458)
.. . .+..-+++... +.++|+++++..
T Consensus 89 ~~-----~-~~i~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 IS-----T-PILFKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred cH-----H-HHHHHHHhcCC-CcceEEEEEEHH
Confidence 11 1 22233445433 569999999754
No 477
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.42 E-value=39 Score=34.47 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=76.2
Q ss_pred CEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC---CCCCCeeEEEeccccccc-
Q 012709 46 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVDW- 121 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp---fp~~sFD~I~~~~~l~~~- 121 (458)
.+++|+=||-|.+..-+...|+. -+.++|+++..++.-+.+.....+...|...+. ++...+|+++...-=..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 47999999999999888888863 577999999998877766543444444544332 221278999975320111
Q ss_pred -------cccHH-H---HHHHHHhcccCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccE
Q 012709 122 -------DQKDG-I---LLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 177 (458)
Q Consensus 122 -------~~~~~-~---~L~ei~RvLkPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~ 177 (458)
..++. . .+.++...++| .+++.+....-... ....++.+...+++.++.
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-----~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-----KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-----CchHHHHHHHHHHHcCCc
Confidence 11222 2 34455556678 56666654422111 233577777777877776
No 478
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=65.31 E-value=45 Score=32.90 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=60.9
Q ss_pred CCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
...+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++.|....+. .....+ ....+.+|+|+-.-
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~-~~~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFN-YKTVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEe-CCCccHHHHHHHHCCCCcEEEEECC
Confidence 4568888884 4666776676642 347899999998888888877533222 111111 11224689888542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
. ...+.+..+.|+++|+++....
T Consensus 220 g--------~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 220 G--------GEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred C--------HHHHHHHHHhhccCCEEEEEcc
Confidence 1 2467889999999999987653
No 479
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=65.17 E-value=27 Score=35.01 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=60.8
Q ss_pred CEEEEECCC--CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccccccccc
Q 012709 46 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 123 (458)
Q Consensus 46 ~~VLDVGCG--~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~~ 123 (458)
.+|+=+|.| -|+++..+..+|. ...+++.|.+.+....+.+.++.-....... --.....|+|+.+ .+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~---~~~~~~aD~Viva---vPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAGL---AEAAAEADLVIVA---VPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccchh---hhhcccCCEEEEe---ccHH-
Confidence 467778877 4577777777774 5678999999999998888775443322110 1122457999865 3333
Q ss_pred cHHHHHHHHHhcccCCcEEEE
Q 012709 124 KDGILLLEVDRVLKPGGYFVW 144 (458)
Q Consensus 124 ~~~~~L~ei~RvLkPGG~lii 144 (458)
....+++++..-|+||..+.=
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEe
Confidence 234688899888998865543
No 480
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=64.93 E-value=10 Score=33.48 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=23.8
Q ss_pred EECCCCc--hhHHHHh-hcCCccceEEEEcCCHHHHHHHHHc
Q 012709 50 DIGCGYG--SFGAHLF-SKELLTMCIANYEASGSQVQLTLER 88 (458)
Q Consensus 50 DVGCG~G--~~~~~La-~~~~~~~~v~gvD~S~~~i~~A~er 88 (458)
|||+..| ....+++ +...+..+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6655554 2233567899999999988766555
No 481
>PTZ00357 methyltransferase; Provisional
Probab=64.58 E-value=24 Score=39.81 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred CEEEEECCCCchhHHHHhh----cCCccceEEEEcCCHHHHHHHHHc--------------CCCeEEEeeccCCCCCCC-
Q 012709 46 RTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQLPYPS- 106 (458)
Q Consensus 46 ~~VLDVGCG~G~~~~~La~----~~~~~~~v~gvD~S~~~i~~A~er--------------~~~~~~~~~d~~~Lpfp~- 106 (458)
-.|+=+|+|.|-+....++ .+. ..+|.++|-++..+.+.+.+ +-.+.++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 3689999999976655543 232 46899999996543333222 113688888887764331
Q ss_pred ----------CCeeEEEeccccccccccH--HHHHHHHHhcccC----CcE
Q 012709 107 ----------LSFDMLHCARCGVDWDQKD--GILLLEVDRVLKP----GGY 141 (458)
Q Consensus 107 ----------~sFD~I~~~~~l~~~~~~~--~~~L~ei~RvLkP----GG~ 141 (458)
+.+|+|++ +.|-.+-++. .+.|..+.+.||+ +|.
T Consensus 781 ~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37999996 3444454332 2688888888887 675
No 482
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=64.49 E-value=5.4 Score=39.58 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.4
Q ss_pred eEEeeccccchhhhhhhhccC
Q 012709 308 RNVLDMNAHFGGFNSALLEKG 328 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~ 328 (458)
.+|+|+|||.|.++.+|.++.
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~ 64 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERA 64 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhC
Confidence 579999999999999999543
No 483
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=64.16 E-value=36 Score=33.94 Aligned_cols=94 Identities=17% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC------CCCCCCeeEEEecc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L------pfp~~sFD~I~~~~ 116 (458)
...+||-.|+| .|..+..+++... ...++.++.++...+.+++.+....+ ......+ -.+.+.+|+|+...
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~~g~~~vi-~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKEAGATDII-NPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHhCCcEEE-cCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 34688887765 3555555665421 12678888888888877776632211 1111110 01235699888531
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
. ....+.+..+.|+++|.++...
T Consensus 245 g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1247888899999999998765
No 484
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=64.05 E-value=27 Score=35.65 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=43.2
Q ss_pred CCCEEEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEeccc
Q 012709 44 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC 117 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~ 117 (458)
....++|.=-|.|..+..++++. +..+++|+|-.+.+++.|+++-. ++ ++.|.+++.++.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~------------~~-~~r~~~~~~~F~ 79 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLK------------KF-DDRFIFIHGNFS 79 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTC------------CC-CTTEEEEES-GG
T ss_pred CCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHh------------hc-cceEEEEeccHH
Confidence 44589999999999999999864 44899999999999999987631 12 467888887754
No 485
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=63.90 E-value=38 Score=34.08 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccce-EEEEcCCHHHHHHHHHcCCCeEEEeecc--CCC--CCCCCCee-EEEecc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFAS--KQL--PYPSLSFD-MLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~-v~gvD~S~~~i~~A~er~~~~~~~~~d~--~~L--pfp~~sFD-~I~~~~ 116 (458)
...+||=.||| .|..+..+++.. ..+ +++++.+++-.+.+++.+....+...+. ..+ -.....+| +|+-.-
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVAL--GAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 45688888875 334444455432 234 7899999999888877665322211100 000 01223577 555321
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.. ...+.+..+.|++||.+++...
T Consensus 238 ------G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 ------GV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ------CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 3478889999999999999874
No 486
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=63.80 E-value=71 Score=34.60 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCchhHHHHhhc---CCccceEEEEcCCHHHHHHHHHc----CCC---eEEEeeccCCC-CC-CCCCeeE
Q 012709 44 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-PY-PSLSFDM 111 (458)
Q Consensus 44 ~~~~VLDVGCG~G~~~~~La~~---~~~~~~v~gvD~S~~~i~~A~er----~~~---~~~~~~d~~~L-pf-p~~sFD~ 111 (458)
+...|.|.-||+|.+.....+. +.....++|.+....+...|+.+ +.. .....++...- .+ ....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 3468999999999887654321 22234689999999999888765 221 12223332221 12 2356888
Q ss_pred EEecccc--------------------ccc----cccHHHHHHHHHhcccCCcEEEEEeCC
Q 012709 112 LHCARCG--------------------VDW----DQKDGILLLEVDRVLKPGGYFVWTSPL 148 (458)
Q Consensus 112 I~~~~~l--------------------~~~----~~~~~~~L~ei~RvLkPGG~liis~~~ 148 (458)
|+++--+ .|+ ....-.++..+..+|++||...+.-+.
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~ 357 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFP 357 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecC
Confidence 8865311 111 111236788899999999997777653
No 487
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=63.50 E-value=7 Score=39.04 Aligned_cols=74 Identities=18% Similarity=0.332 Sum_probs=49.3
Q ss_pred cccccccCCCCC---CccccccccccccccccCCCCCCcchhhhhhcccccCCceEEE--------ecc-------HH-H
Q 012709 357 LHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII--------RDT-------AR-L 417 (458)
Q Consensus 357 ~~~~~~~~~~yp---~t~dl~h~~~~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~--------~d~-------~~-~ 417 (458)
..|++|-++. + .+||.|=.. .|-.- -=+|.+.|-.|-++|||||++|- .+. .+ .
T Consensus 150 aGDF~e~y~~-~~~~~~~d~VvT~-FFIDT-----A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs 222 (270)
T PF07942_consen 150 AGDFLEVYGP-DENKGSFDVVVTC-FFIDT-----AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELS 222 (270)
T ss_pred cCccEEecCC-cccCCcccEEEEE-EEeec-----hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCC
Confidence 3455555543 3 467765533 22211 23466888999999999998883 343 22 2
Q ss_pred HHHHHHHHhhccceEEEEee
Q 012709 418 IESARALTTRLKWDARVIEI 437 (458)
Q Consensus 418 ~~~~~~~~~~~~w~~~~~~~ 437 (458)
+++|+.+++.+.|+....+.
T Consensus 223 ~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 223 LEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHHHHCCCEEEEEEE
Confidence 89999999999999876553
No 488
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=63.02 E-value=24 Score=29.53 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=54.6
Q ss_pred CCCchhHHHHhhcCCcc-ceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCC----CCCCCeeEEEeccccccccccHHH
Q 012709 53 CGYGSFGAHLFSKELLT-MCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARCGVDWDQKDGI 127 (458)
Q Consensus 53 CG~G~~~~~La~~~~~~-~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lp----fp~~sFD~I~~~~~l~~~~~~~~~ 127 (458)
||.|.++..+++.-... ..++.+|.+++.++.+++.+. .+..+|..+.. ..-...|.|++..- .+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~--~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGV--EVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS--EEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccc--ccccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 55566777665432112 379999999999999998884 45555544321 12246787776532 111124
Q ss_pred HHHHHHhcccCCcEEEEEeC
Q 012709 128 LLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 128 ~L~ei~RvLkPGG~liis~~ 147 (458)
.+....|-+.|...++....
T Consensus 78 ~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 78 LIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEEC
Confidence 55566777888888888764
No 489
>PLN02827 Alcohol dehydrogenase-like
Probab=62.75 E-value=40 Score=34.83 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=58.1
Q ss_pred CCCCEEEEECCC-CchhHHHHhhc-CCccceEEEEcCCHHHHHHHHHcCCCeEEEeecc-CCC-----CCCCCCeeEEEe
Q 012709 43 AGVRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-----PYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGCG-~G~~~~~La~~-~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~-~~L-----pfp~~sFD~I~~ 114 (458)
....+||=+|+| .|.++..+++. |. ..++++|.++...+.|++.|....+...+. ... ....+.+|+|+-
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 345789988875 34444445543 32 258899999999999988776432211110 000 011235888875
Q ss_pred ccccccccccHHHHHHHHHhcccCC-cEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPG-G~liis~~ 147 (458)
.-. . ...+.+..+.|++| |.+++...
T Consensus 270 ~~G------~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CVG------D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CCC------C-hHHHHHHHHhhccCCCEEEEECC
Confidence 321 1 23677888999999 99988764
No 490
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=62.62 E-value=12 Score=36.54 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=74.1
Q ss_pred ceeEEeeccccchhhhhhhhccCCCeEEEEeecCC-CCCCchhhhcccccc--ccccccccCCCCCCccccccccccccc
Q 012709 306 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTI-GTNHLPMILDRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLSL 382 (458)
Q Consensus 306 ~~r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~-~~~~l~~~~~rgl~g--~~~~~~~~~~~yp~t~dl~h~~~~~~~ 382 (458)
+=+-|||+|||+|=-++-|.+.. -+|+= +| ++.-|-++.+|-+=| +..|.-|..|+=|-|||=+-.-+-..-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiG----vDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIG----VDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEe----ecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 35889999999998888888544 45541 23 236777777754432 345667999998999996442222211
Q ss_pred cccCCCCCCcc-----hhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccce
Q 012709 383 ESGHRHRCSTL-----DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 431 (458)
Q Consensus 383 ~~~~~~~c~~~-----~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~ 431 (458)
+-.....|... ..+--.=..|.+|+-++++=-++..+.++-|..+-.|.
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 10001122222 22333668899999999985555555666665555555
No 491
>PRK04148 hypothetical protein; Provisional
Probab=62.34 E-value=6.2 Score=35.24 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=54.4
Q ss_pred eEEeeccccchh-hhhhhhccCCCeEEEEeecCCCCCCchhhhccccccccccccccCCCCCCccccccccccccccccC
Q 012709 308 RNVLDMNAHFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 386 (458)
Q Consensus 308 r~~~d~~~~~g~-faa~l~~~~~~~~~m~v~~~~~~~~l~~~~~rgl~g~~~~~~~~~~~yp~t~dl~h~~~~~~~~~~~ 386 (458)
+.|+|+|||+|. +|..|.+.+..|..+=+-| .-+.-+-++|+-.+.-|+=++=..-=+-+|+|-
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~----~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liy----------- 82 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE----KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIY----------- 82 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH----HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEE-----------
Confidence 459999999996 9999985544444432222 345556667665555554433111001233332
Q ss_pred CCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEEEEee
Q 012709 387 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 437 (458)
Q Consensus 387 ~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~~~~~ 437 (458)
-+|=..++...+.++++.+.=++.+.-.
T Consensus 83 -----------------------sirpp~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 83 -----------------------SIRPPRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred -----------------------EeCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 1345567778888888888888777644
No 492
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=61.76 E-value=58 Score=32.11 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCCCCCeeEEEecccccccc
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 122 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp~~sFD~I~~~~~l~~~~ 122 (458)
...+||=.|+| .|.....+++. ...+++.++.+++..+.+++.+....+.. ... ...+.+|+|+-..
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~------ 222 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEAT------ 222 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECC------
Confidence 34678888764 22333333332 13368899999999999988665332211 111 2345699988542
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.....+..+.+.|+++|.++...
T Consensus 223 -g~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 223 -GSPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred -CChHHHHHHHHHhhcCCEEEEEc
Confidence 11346778889999999999744
No 493
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=61.74 E-value=55 Score=32.83 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=60.8
Q ss_pred CCCCEEEEECC--CCchhHHHHhhcCCccceEEEEcCCHHHHHHHHH-cCCCeEEEeeccCCC-----CCCCCCeeEEEe
Q 012709 43 AGVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGLPAMIGSFASKQL-----PYPSLSFDMLHC 114 (458)
Q Consensus 43 ~~~~~VLDVGC--G~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~e-r~~~~~~~~~d~~~L-----pfp~~sFD~I~~ 114 (458)
..+.+||=.|+ |.|..+..+++.. ..++++++.+++..+.+++ .|....+...+...+ ....+.+|+|+-
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 34578998887 4666777777642 3478888988988888877 565322221110010 011246898875
Q ss_pred ccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 115 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 115 ~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.-. ...+.+..+.|+++|.++....
T Consensus 228 ~~g--------~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 228 NVG--------GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred CCC--------HHHHHHHHHHhccCcEEEEecc
Confidence 311 2467889999999999998653
No 494
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=61.60 E-value=67 Score=32.49 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=56.7
Q ss_pred CCCEEEEECCC-CchhHHHHhhcCCccc-eEEEEcCCHHHHHHHHHcCCCeEEEeeccCCC--------C-CCCCCeeEE
Q 012709 44 GVRTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASKQL--------P-YPSLSFDML 112 (458)
Q Consensus 44 ~~~~VLDVGCG-~G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~L--------p-fp~~sFD~I 112 (458)
...+||=.|+| .|..+..+++. ... ++++++.++...+.+++.+....+. ...... . ...+.+|+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~v 253 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVV 253 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEE
Confidence 45678878864 33444444543 234 7899999988888887666532221 111100 0 122468998
Q ss_pred EeccccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 113 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 113 ~~~~~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
+-.-. ....+.+..+.|+++|+++....
T Consensus 254 id~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 254 IEASG-------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EECCC-------ChHHHHHHHHHhccCCEEEEEcC
Confidence 84311 12367788899999999998764
No 495
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=61.57 E-value=4.3 Score=41.12 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=56.6
Q ss_pred eEEeeccccchhhhhhhhccCCCeEEEEeecCCCC-CCchhh----hccccccccccccccC----CCCCCccccccccc
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAF----PTYPRTYDLVHAEG 378 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~~m~v~~~~~~-~~l~~~----~~rgl~g~~~~~~~~~----~~yp~t~dl~h~~~ 378 (458)
..|+|++||.|.|+..|..... .|+-++.. ..+..+ -..|+ .-.+=.|... ..-...||+|-.+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC-
Confidence 5799999999999999983322 44444443 333322 12233 1111111111 1112468887644
Q ss_pred cccccccCCCCCCcchhhhhhcccccCCceEEEeccHHHHHHHHHHHhhccceEE
Q 012709 379 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDAR 433 (458)
Q Consensus 379 ~~~~~~~~~~~c~~~~~~~e~drilrp~g~~~~~d~~~~~~~~~~~~~~~~w~~~ 433 (458)
-.|.++...++++=.-++|++.+++.-++..+.+--+.+. -|++.
T Consensus 248 --------PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l~--~y~~~ 292 (315)
T PRK03522 248 --------PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHLP--GYRIE 292 (315)
T ss_pred --------CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhcc--CcEEE
Confidence 1233444334444333689999999866665544333332 45543
No 496
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=60.55 E-value=62 Score=32.28 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCCEEEEECCCC-chhHHHHhhcCCccce-EEEEcCCHHHHHHHHHcCCCeEEEeeccCC---C-CC-CCCCeeEEEecc
Q 012709 44 GVRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQ---L-PY-PSLSFDMLHCAR 116 (458)
Q Consensus 44 ~~~~VLDVGCG~-G~~~~~La~~~~~~~~-v~gvD~S~~~i~~A~er~~~~~~~~~d~~~---L-pf-p~~sFD~I~~~~ 116 (458)
...+||-.|+|. |.....+++.. ... ++.++.++...+.+.+.+.. .+....... + .. +...||+|+..-
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~vld~~ 235 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVARELGAD-DTINPKEEDVEKVRELTEGRGADLVIEAA 235 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCCC-EEecCccccHHHHHHHhCCCCCCEEEECC
Confidence 446888888754 55555555532 334 88998888888887666542 222111100 0 11 223589998541
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEeC
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 147 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~~ 147 (458)
.....+..+.+.|+++|.++....
T Consensus 236 -------g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 236 -------GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred -------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 123467889999999999988764
No 497
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=60.49 E-value=57 Score=32.60 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=58.2
Q ss_pred CEEEEECC--CCchhHHHHhhcCCccc-eEEEEcCCHHHHHHHHH-cCCCeEEEeeccCCC-----CCCCCCeeEEEecc
Q 012709 46 RTILDIGC--GYGSFGAHLFSKELLTM-CIANYEASGSQVQLTLE-RGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 116 (458)
Q Consensus 46 ~~VLDVGC--G~G~~~~~La~~~~~~~-~v~gvD~S~~~i~~A~e-r~~~~~~~~~d~~~L-----pfp~~sFD~I~~~~ 116 (458)
.+||=.|+ |.|..+..+++.. .. ++++++.+++..+.+++ .|....+... ...+ ....+.+|+|+..-
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~-~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINYK-TDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEECC-CCCHHHHHHHHCCCCceEEEECC
Confidence 68988886 4667777777642 34 68999999988888776 5653322211 1111 01124699998542
Q ss_pred ccccccccHHHHHHHHHhcccCCcEEEEEe
Q 012709 117 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 117 ~l~~~~~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
. ...+.+..+.|+++|+++...
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 124578889999999999865
No 498
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=60.32 E-value=6.4 Score=38.69 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=20.1
Q ss_pred eEEeeccccchhhhhhhhccCCCeE
Q 012709 308 RNVLDMNAHFGGFNSALLEKGKSVW 332 (458)
Q Consensus 308 r~~~d~~~~~g~faa~l~~~~~~~~ 332 (458)
.+|+|+|||.|.++..|.++...|.
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~~v~ 55 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAKKVY 55 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCCEEE
Confidence 7899999999999999995433333
No 499
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.08 E-value=14 Score=37.45 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=72.0
Q ss_pred EEEECCCCchhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEecccccc------
Q 012709 48 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD------ 120 (458)
Q Consensus 48 VLDVGCG~G~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~------ 120 (458)
|+|+-||-|.++.-+.+.|+. .+.++|+++.+.+.-+.+... .+...|...+... -..+|+++...-=-.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 589999999999999888763 466899999998887776433 3344555554311 124899986421001
Q ss_pred ---ccccHHHHHHHHHhcc---cCCcEEEEEeCCCCcccccccHHHHHHHHHHHHHHHhhccEEEEe
Q 012709 121 ---WDQKDGILLLEVDRVL---KPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 181 (458)
Q Consensus 121 ---~~~~~~~~L~ei~RvL---kPGG~liis~~~~~~~~~~~~~e~~~~w~~i~~l~~~~~w~~v~~ 181 (458)
..+....++.++.|++ +|. +++.+......... ....++.+...++.+++.....
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~----~~~~~~~i~~~l~~~GY~v~~~ 138 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHD----KGRTFKVIIETLEELGYKVYYK 138 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcc----cchHHHHHHHHHHhCCCEEEEE
Confidence 1112224555555555 664 55555433211110 1123555666667777765443
No 500
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=60.03 E-value=28 Score=30.82 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=43.0
Q ss_pred CCEEEEECCCCc-hhHHHHhhcCCccceEEEEcCCHHHHHHHHHcCCCeEEEeeccCCCCCC-CCCeeEEEecccccccc
Q 012709 45 VRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 122 (458)
Q Consensus 45 ~~~VLDVGCG~G-~~~~~La~~~~~~~~v~gvD~S~~~i~~A~er~~~~~~~~~d~~~Lpfp-~~sFD~I~~~~~l~~~~ 122 (458)
.++|+|||-|.= ..+..|.+.|+ .|+++|+.+. .|. .|++ +..-|..+-... =...|+|.+.+. +
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~---dV~~tDi~~~---~a~-~g~~--~v~DDif~P~l~iY~~a~lIYSiRP----P 80 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGF---DVIATDINPR---KAP-EGVN--FVVDDIFNPNLEIYEGADLIYSIRP----P 80 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------STT--EE---SSS--HHHHTTEEEEEEES------
T ss_pred CCcEEEECcCCCHHHHHHHHHcCC---cEEEEECccc---ccc-cCcc--eeeecccCCCHHHhcCCcEEEEeCC----C
Confidence 359999999976 55566666665 8999999987 222 3333 343344332100 046899998875 2
Q ss_pred ccHHHHHHHHHhcccCCcEEEEEe
Q 012709 123 QKDGILLLEVDRVLKPGGYFVWTS 146 (458)
Q Consensus 123 ~~~~~~L~ei~RvLkPGG~liis~ 146 (458)
.+....+.++.+-+ |.-+++..
T Consensus 81 ~El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-
T ss_pred hHHhHHHHHHHHHh--CCCEEEEC
Confidence 23334555555443 34555554
Done!