Your job contains 1 sequence.
>012710
MIDVAAAGLGKETQISTSSFNKNMSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKE
PICFRTHCVLSTTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEE
NLGTSLATETLTSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSS
ADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV
SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRAT
TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL
NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST
YAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNLQSEGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012710
(458 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 972 7.4e-98 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 383 3.0e-35 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 372 3.5e-34 1
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 340 1.2e-30 1
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 307 5.5e-27 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 242 1.7e-24 2
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 285 2.0e-24 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 286 2.0e-24 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 257 3.5e-24 3
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 272 1.1e-23 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 257 4.5e-23 2
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 263 1.9e-22 2
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 251 1.9e-21 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 250 2.4e-21 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 253 4.9e-21 2
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 246 6.8e-21 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 243 1.6e-20 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 251 1.7e-20 3
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 259 3.9e-20 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 252 1.0e-19 2
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 250 1.1e-19 2
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 245 1.2e-19 2
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 250 1.8e-19 2
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 250 1.8e-19 2
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 251 1.9e-19 2
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 252 3.4e-19 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 234 3.5e-19 2
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 246 2.2e-18 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 240 1.1e-17 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 225 1.1e-16 2
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 180 6.4e-11 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 175 2.2e-10 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 160 2.7e-09 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 159 3.7e-09 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 157 6.8e-09 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 148 2.1e-08 2
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 150 2.6e-08 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 148 6.6e-08 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 148 6.6e-08 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 145 1.7e-07 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 144 1.9e-07 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 140 3.5e-07 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 140 3.9e-07 1
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 133 2.6e-06 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 134 2.7e-06 1
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 134 2.8e-06 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 130 4.3e-06 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 128 9.2e-06 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 129 1.0e-05 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 128 1.3e-05 1
TIGR_CMR|BA_4566 - symbol:BA_4566 "RNA polymerase sigma-2... 119 8.5e-05 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 116 0.00019 1
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
Identities = 214/423 (50%), Positives = 256/423 (60%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLXXXXXXXXXXXXXKEPICFRTHCVLXXXXXXXXXXXXXV 84
SCLLPQFKC PD+FSIHFRT K + F+ C + +
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVSTSPALLTS----M 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTXXXXXXXXXXXX 144
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 145 XXXXXXXXXXXXXXXXXMVNHHNXXXXXXXXXXXXXXDTNTSMWAQLTERERASIIGDSV 204
+ + N S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNTNLLTSSTAD-----KRSKWDQFTEKERAGILGHLA 167
Query: 205 IVEAAPEEEYSEQQPLNKSA--DLEPT-HEELKLLEEQVSQSIAVRSXXXXXXXXXXXXX 261
+ + + NK + DLE EE++LLEEQ S S+AVRS
Sbjct: 168 VSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKG 227
Query: 262 XXXXXXNVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
+ SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSAGIQD
Sbjct: 228 LEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQD 287
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRLVISI
Sbjct: 288 LLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISI 347
Query: 382 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441
AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR I
Sbjct: 348 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMI 407
Query: 442 RLP 444
RLP
Sbjct: 408 RLP 410
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 383 (139.9 bits), Expect = 3.0e-35, P = 3.0e-35
Identities = 82/223 (36%), Positives = 120/223 (53%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSXXXXXXXXXXXXXXXXXXXNVMSVKSGSTSRRKR 282
S D ++EEL Q + VRS +V S + K
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 283 PSVQEV-DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
V + +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+GC
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCS 368
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 369 GLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 411
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 372 (136.0 bits), Expect = 3.5e-34, P = 3.5e-34
Identities = 75/168 (44%), Positives = 107/168 (63%)
Query: 277 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
TS +K+ Q D D L+ + +LLTA EE +L + IQ LLKLE ++ L +
Sbjct: 219 TSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQN 277
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
G PT +WA A G+ L+ ++ G ++K+IT+N+RLV+ IAK YQ G+N QDL+
Sbjct: 278 GCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLL 337
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTIRLP
Sbjct: 338 QEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLP 385
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 340 (124.7 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 69/155 (44%), Positives = 98/155 (63%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 325
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 326 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 360
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 307 (113.1 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 68/168 (40%), Positives = 102/168 (60%)
Query: 284 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
+V +V +R Y++ S +L+ E ++LS I+ L+L+ + L +R G P+
Sbjct: 177 AVSDVSSGKQVRGYVKGVISED-VLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSD 235
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
Q A + + + EL+ L L ++K+ SN+RLV+SIA+ Y G + DLVQ G G
Sbjct: 236 EQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIG 295
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
L+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H R
Sbjct: 296 LLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHER 343
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 242 (90.2 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 47/95 (49%), Positives = 67/95 (70%)
Query: 352 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+++EL R+ G +DKMI SN+RLV+ IAK Y G+ DL++EG GL++ E+F
Sbjct: 77 EEKELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERF 136
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
SK +FSTYA WWI+Q++ ++L +QSRTIRLPV
Sbjct: 137 KLSKECRFSTYATWWIRQSIERALVNQSRTIRLPV 171
Score = 54 (24.1 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 284 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGI 319
++++ + D ++ YLR +RLLTA+EE +L+ I
Sbjct: 50 NIEQEHFDDAIKLYLREI-QRTRLLTADEEKELAGRI 85
Score = 44 (20.5 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 206 VEAAPEEEYSEQQPLNKSADLEPTH--EELKLLEEQVSQS 243
+EAA EEE E+ P ++E H + +KL ++ ++
Sbjct: 32 LEAAEEEEEPEE-PAEVGKNIEQEHFDDAIKLYLREIQRT 70
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 285 (105.4 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 69/168 (41%), Positives = 101/168 (60%)
Query: 279 RRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
R+ R + +D +R YL+ + LL A EE++L+ I+ L L LSER
Sbjct: 213 RQARKDAELTASADSVRAYLKQIGKVA-LLNAEEEVELAKRIEAGLYATQLMTELSERGE 271
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
P AQ +R++ G K+ ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 272 KLPA-AQ--------RRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQ 322
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 323 EGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 370
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 286 (105.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 50/136 (36%), Positives = 92/136 (67%)
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+ E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
+++ S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394
Query: 429 AVRKSLSDQSRTIRLP 444
++ +S +R + +P
Sbjct: 395 SMSTMVSRHARGVHIP 410
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 257 (95.5 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 50/95 (52%), Positives = 69/95 (72%)
Query: 352 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
++ EL +R G K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EKF
Sbjct: 118 EEIELAKRKEEGDEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKF 177
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 178 DYRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 212
Score = 38 (18.4 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 205 IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAV 246
+V PE E L+ D +P+ + L+ + + IA+
Sbjct: 56 VVPEIPELELDSINSLDDDVDFKPSDIDEVDLDLTIPEGIAI 97
Score = 37 (18.1 bits), Expect = 3.5e-24, Sum P(3) = 3.5e-24
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLS 316
DP+R LLT EE++L+
Sbjct: 99 DPVRMYLKEIGRVPLLTPEEEIELA 123
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 51/93 (54%), Positives = 69/93 (74%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+R+L + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 73 KRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 132
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 133 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 257 (95.5 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 46/79 (58%), Positives = 62/79 (78%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ EKFD KGFKFSTYA WWI
Sbjct: 137 KRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWI 196
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QA+ ++++DQ+RTIR+PV
Sbjct: 197 RQAITRAIADQARTIRIPV 215
Score = 46 (21.3 bits), Expect = 4.5e-23, Sum P(2) = 4.5e-23
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
V +DP+R LL+A EE++L+ I++
Sbjct: 98 VKINDPVRMYLKEIGRVDLLSAEEEIRLATRIEE 131
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 263 (97.6 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 62/148 (41%), Positives = 88/148 (59%)
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
S S L+ EE+QL +++ KLE L + E A+G R ++R
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN-----EMVSVLLASG---RGKKKRSA 169
Query: 362 YGILCKDKMITSNI-----RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
ILC+ K I RLV+SIA YQG G+NLQDL+QEG GL+RGAE+FD +G+
Sbjct: 170 NEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGY 229
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
K STY +WWIKQA+ ++++ +SR ++LP
Sbjct: 230 KLSTYVYWWIKQAILRAIAHKSRLVKLP 257
Score = 38 (18.4 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 116 PSTEENLGTSLATETLT 132
P EEN G ET++
Sbjct: 95 PEEEENAGVEAEAETIS 111
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 62/170 (36%), Positives = 94/170 (55%)
Query: 285 VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK---------LEGLREVLSER 335
V+E D+ D + T + LT++EE+ G + ++ L+ + LSE
Sbjct: 10 VEEFDFEDEALEVLETDAE---LTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSE- 65
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
G SP A + RR L + +MI SN+RLV+ I++ Y G+ L DL
Sbjct: 66 IGFSPLLT-----AEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDL 120
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++EG GL+R EKFD +GF+FSTYA WWI+Q + ++L +Q+RTIRLP+
Sbjct: 121 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI 170
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 44/89 (49%), Positives = 64/89 (71%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
RR L + + +MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF
Sbjct: 81 RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGF 140
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA WWI+Q + +++ +Q+RTIRLP+
Sbjct: 141 RFSTYATWWIRQTIERAIMNQTRTIRLPI 169
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 253 (94.1 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 45/76 (59%), Positives = 62/76 (81%)
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
+I +N+RLV+S+AK + G GM L DL+QEG GL+R EKFD +GFKFSTYA WWI+QA
Sbjct: 287 LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQA 346
Query: 430 VRKSLSDQSRTIRLPV 445
+ ++++DQ+RTIR+PV
Sbjct: 347 ITRAIADQARTIRIPV 362
Score = 49 (22.3 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
DP+R LL+A +E L+ +++ ++ +R+ E+ G P+ A+
Sbjct: 99 DPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 246 (91.7 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 55/137 (40%), Positives = 84/137 (61%)
Query: 311 EEMQLSAGIQDLLK--LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E+ L +QD L+ L+ + L E G SP + A + R+ L ++
Sbjct: 35 QELGLEQQVQDDLQKNLDATQLYLGE-IGFSPLLS-----AEEEVYFSRKALKGCEKSRN 88
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
+MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF+FSTYA WWI+Q
Sbjct: 89 RMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQ 148
Query: 429 AVRKSLSDQSRTIRLPV 445
+ +++ +Q+RTIRLP+
Sbjct: 149 TIERAIMNQTRTIRLPI 165
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 243 (90.6 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 41/79 (51%), Positives = 60/79 (75%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
+ +MI SN+RLV+ IA+ Y G+ L DL++EG GL+R EKFD +GF+FSTYA WWI
Sbjct: 57 RKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI 116
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + +++ +Q+RTIRLP+
Sbjct: 117 RQTIERAIMNQTRTIRLPI 135
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 251 (93.4 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 48/96 (50%), Positives = 69/96 (71%)
Query: 354 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+E+ RR+ G K +MI +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 442 KEINRRVAIGEAKSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 501
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 502 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 537
Score = 46 (21.3 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 287 EVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
E +DP+R S LLT E+ ++ I+ EG+R+V+
Sbjct: 180 ETRTTDPVRMYMREMGSVELLTREGEIVIAKRIE-----EGIRQVM 220
Score = 38 (18.4 bits), Expect = 1.7e-20, Sum P(3) = 1.7e-20
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 186 SMWAQLTERERASIIGDSVIV-EAAPEEEYSE--QQPLNKSADLEPTHEELKLLEEQVSQ 242
S+ ++L +RA SV V + ++E ++ QPL K+A+ +P+ + + ++ +
Sbjct: 31 SVKSKLKTVKRAPAKPKSVTVAKTKSKKEKAKVVSQPLPKTAEKKPSAPPSETQQPKIGE 90
Query: 243 SIA 245
+ A
Sbjct: 91 NAA 93
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 259 (96.2 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 57/125 (45%), Positives = 83/125 (66%)
Query: 322 LLKLEGLREVLS-ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
LL+++ ++LS E C GS F A A + + E R N K +MI +N+RLV+S
Sbjct: 354 LLEMQNRVKLLSGEDCPGS--FK--ALVAKIQKHE--RTANRA---KQEMIKANLRLVVS 404
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
IAK Y G+ DLVQEG GL++ +KFD +G+KFSTYA WW++QA+ ++++DQ+RT
Sbjct: 405 IAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQART 464
Query: 441 IRLPV 445
IR+PV
Sbjct: 465 IRIPV 469
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 252 (93.8 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 47/100 (47%), Positives = 73/100 (73%)
Query: 351 VDQ-RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
++Q +++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++
Sbjct: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KF+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 454
Score = 41 (19.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
+DP+R + LLT E+ ++ I+D
Sbjct: 95 TDPVRMYMREMGTVELLTREGEIDIAKRIED 125
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 250 (93.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 43/79 (54%), Positives = 62/79 (78%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K +MI +N+RLV+SIAK Y G+ DLVQEG GL++ +KFD +G+KFSTYA WW+
Sbjct: 386 KQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYATWWV 445
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QA+ ++++DQ+RTIR+PV
Sbjct: 446 RQAITRAIADQARTIRIPV 464
Score = 44 (20.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 284 SVQEVDYS---DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
S++ D+ DP+R SS LL+ E++++ I+ K+ LR ++
Sbjct: 88 SIKSWDFGQTDDPIRMYLCEMSSVELLSREGEIEIAKKIKSE-KVNMLRSLVESPIV-LR 145
Query: 341 TFAQW 345
TF W
Sbjct: 146 TFMSW 150
Score = 42 (19.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 182 DTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKL 235
D+ ++ Q E E SII ++ I + E++ S+ KS D T + +++
Sbjct: 52 DSGINVLEQSDEDEANSIIEENRIKDEMDEDDVSDTSI--KSWDFGQTDDPIRM 103
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 245 (91.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 41/81 (50%), Positives = 63/81 (77%)
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
L K +++ +N+RLV+SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA W
Sbjct: 339 LAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATW 398
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++DQ+RTIR+PV
Sbjct: 399 WIRQAITRAIADQARTIRIPV 419
Score = 49 (22.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQD 321
SDP+R YLR S S LLT E++++ I++
Sbjct: 94 SDPVRMYLREMGSVS-LLTREGEVEIAKRIEE 124
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 250 (93.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 354 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 371 KDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 430
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 431 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 466
Score = 42 (19.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
+DP+R + LLT E+ ++ I+D + ++ ++E G P
Sbjct: 97 TDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQSAIAEYPGTIP 144
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 250 (93.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 354 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 371 KDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 430
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 431 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 466
Score = 42 (19.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
+DP+R + LLT E+ ++ I+D + ++ ++E G P
Sbjct: 97 TDPVRMYMREMGTVELLTREGEIDIAKRIED--GINQVQSAIAEYPGTIP 144
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 251 (93.4 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 46/96 (47%), Positives = 70/96 (72%)
Query: 354 RELRRRLNYGIL----CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+++ RR++ G K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +K
Sbjct: 361 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 420
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+ +G+KFSTYA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 421 FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV 456
Score = 40 (19.1 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+DP+R + LLT E+ ++ I+ EG++EV
Sbjct: 95 TDPVRMYMREMGTVELLTRKGEIVIAKRIE-----EGIKEV 130
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 252 (93.8 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 53/127 (41%), Positives = 80/127 (62%)
Query: 326 EGLREVLSE--RCGGSPTFAQWAAAAGVDQ-RELRRRLNYGIL----CKDKMITSNIRLV 378
EGLR V + RC + + +++ RR++ G K +M+ +N+RLV
Sbjct: 331 EGLRMVEEDVQRCRSKLAAIEEETGLVIAAIKDINRRMSIGEAKARRAKKEMVEANLRLV 390
Query: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
ISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI+QA+ +S++DQ+
Sbjct: 391 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 450
Query: 439 RTIRLPV 445
RTIR+PV
Sbjct: 451 RTIRIPV 457
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 234 (87.4 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 41/95 (43%), Positives = 68/95 (71%)
Query: 352 DQRELRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
++ ++ RR++ G + +MI +N+RLV+ IA++Y G+ DL++EG GL+ EKF
Sbjct: 98 EELKIARRVHKGDPKARKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKF 157
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +GF+FSTYA WWI+Q + +++ +QSRT+RLP+
Sbjct: 158 DPERGFRFSTYATWWIRQTIERAIMNQSRTVRLPI 192
Score = 42 (19.8 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 276 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLS 316
+ ++ K +E SDP + YLR LL A EE++++
Sbjct: 63 ANAKAKTKKRRETRSSDPTQIYLREL-GFQPLLNAKEELKIA 103
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 246 (91.7 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 43/79 (54%), Positives = 62/79 (78%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K +M+ +N+RLVISIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 423 KKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI 482
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QA+ +S++DQ+RTIR+PV
Sbjct: 483 RQAITRSIADQARTIRIPV 501
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 240 (89.5 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 41/79 (51%), Positives = 61/79 (77%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K +M SN+RLV+SIAK Y G+ DL+QEG GL++ +KF+ +G+KFSTYA WWI
Sbjct: 382 KGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWI 441
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QA+ ++++DQ+RTIR+P+
Sbjct: 442 RQAISRAIADQARTIRIPI 460
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 225 (84.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
R++ L+ K +M+ +N+RLVISIAK Y GM DL+QEG GL++ +KFD
Sbjct: 349 RKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKAVDKFDHR 408
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGN 452
+G KFSTYA WW +QA+ ++++D +R PV H N
Sbjct: 409 RGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETAN 447
Score = 47 (21.6 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
DP+R YLR S +LL+ ++E++++ I K E L VL
Sbjct: 92 DPVRLYLREM-SYVKLLSRDDEVEIAKAIV-AEKFESLSAVL 131
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 180 (68.4 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 41/142 (28%), Positives = 77/142 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+L++ E L +Q + L +++VL + G P A+ A + E+++++ G
Sbjct: 219 VLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRA 278
Query: 366 CKDKMITSNIRLVISIAKNYQGA---GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
++K+I N+RLV+ + Y G QDL Q G RGL+ ++F+ + F+ STY
Sbjct: 279 ARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYG 338
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WI+ A+ +S++ + T R+P
Sbjct: 339 LFWIRHAIIRSMTTSNFT-RVP 359
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 175 (66.7 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 41/142 (28%), Positives = 77/142 (54%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT+ + ++L +Q + + ++E L P AQ A A + ++RR L G
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 366 CKDKMITSNIRLVI-SIAKNYQGAGMN--LQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
++K+I N+RLV+ +I K Y + D+ Q G GL+ ++F+ +GF+ STYA
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WI+ ++ ++++ + T R P
Sbjct: 323 LFWIRHSIVRAITLSNFT-RFP 343
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 160 (61.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
N + K++TS++RLV+ +A ++ G+ L +L+ EG GL++ +KF+ GF+ ST
Sbjct: 42 NRSVADAHKLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLST 101
Query: 421 YAHWWIKQAVR 431
YA WWIK +++
Sbjct: 102 YAIWWIKASIK 112
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
++IT+ +RL IS+A ++ G + DL+QE GL++ A+KFD +G +FSTYA WWIK
Sbjct: 44 RLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTYAVWWIKA 103
Query: 429 AVR 431
+++
Sbjct: 104 SIQ 106
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 157 (60.3 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
KM+TS++RL IA Y+G G+ +++ E GL++ ++FD KGF+ +TYA WWI+
Sbjct: 52 KMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRA 111
Query: 429 AVRKSLSDQSRTIRLPVIS 447
A+++ + ++L S
Sbjct: 112 AIQEYILRSWSLVKLGTTS 130
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 148 (57.2 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
+ITSN+R V+ IA Y+ G+ + DL+QEG GL+ KF+ KG + +YA WWI+
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAY 108
Query: 430 VRKSL 434
++ +
Sbjct: 109 IQNHI 113
Score = 41 (19.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 210 PEEEYSEQQPLNKSADLEPTH 230
PEEEY + DLE H
Sbjct: 27 PEEEYRFAVKFYEDKDLEAAH 47
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 150 (57.9 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 352 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ R+L R + G I ++K++ N+RLV+S+ + + G + DL Q GC GL++ + F
Sbjct: 23 EMRKLFREMQSGEISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNF 82
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQS 438
D + KFSTYA I +R+ L D +
Sbjct: 83 DLGQNVKFSTYAVPMIIGEIRRYLRDNN 110
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 148 (57.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 31/94 (32%), Positives = 57/94 (60%)
Query: 352 DQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++REL RL+Y G + K +I S++R V+ +A+ Y G G+ + DLVQEG GL++ ++
Sbjct: 33 EERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKR 92
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
F+ G + ++A WIK + + + R +++
Sbjct: 93 FNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKI 126
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 148 (57.2 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 31/94 (32%), Positives = 57/94 (60%)
Query: 352 DQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++REL RL+Y G + K +I S++R V+ +A+ Y G G+ + DLVQEG GL++ ++
Sbjct: 33 EERELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKR 92
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
F+ G + ++A WIK + + + R +++
Sbjct: 93 FNPEMGVRLVSFAVHWIKAEIHEYVLRNWRIVKI 126
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 145 (56.1 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 352 DQRELRRRLNYGILCK-DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ R R GI+ +++TS++RLV+ +A +++ + L +L+ EG GL++ +KF
Sbjct: 32 EDRLARNWYENGIVADAHRLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKF 91
Query: 411 DASKGFKFSTYAHWWIKQAVR 431
+ + GF+ STYA WWIK ++
Sbjct: 92 NPTLGFRLSTYAIWWIKAFIK 112
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 144 (55.7 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 345 WAAAAGVDQRELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
W + ++R L +L+Y G L K +I S++R V+ IA+NY G G+ DL+QEG G
Sbjct: 26 WPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIG 85
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
L++ +F+ G + ++A WIK + + + R +++
Sbjct: 86 LMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKV 126
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 140 (54.3 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 34/93 (36%), Positives = 52/93 (55%)
Query: 352 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ +EL RR G +D++I N+RLV S+ + + G DL Q GC GL++ +KF
Sbjct: 16 EMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKF 75
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
D S KFSTYA I +++ L D T+++
Sbjct: 76 DLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKV 107
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 140 (54.3 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 352 DQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ ++L ++ G + + K+I+ N+RLV+SI + + G + DL Q GC GL++ + F
Sbjct: 23 EMKKLFLKVKEGDMEARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNF 82
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQS 438
D + KFSTYA I +R+ L D +
Sbjct: 83 DLEQNVKFSTYAVPMIIGEIRRYLRDNN 110
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 133 (51.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 30/91 (32%), Positives = 51/91 (56%)
Query: 354 RELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+EL + G + ++K+I N++LV + + + G ++DL Q G GL++ +KFD
Sbjct: 22 KELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDL 81
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
+ KFSTYA I +R+ L D + IR+
Sbjct: 82 KQQVKFSTYAVPMIVGEIRRFLRDD-QAIRI 111
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 134 (52.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 31/91 (34%), Positives = 52/91 (57%)
Query: 355 ELRRRLNY-GILCKDK-MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
EL +RL G L K +I S++R V+ +AK Y G G+ DL+QEG GL++ ++FD
Sbjct: 39 ELAKRLQETGDLQAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDP 98
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
G + ++A WIK + + + R +++
Sbjct: 99 DVGVRLVSFAVHWIKAEIHEYVLKNWRIVKV 129
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 134 (52.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
K++ S++R V+ IA+ Y G G++ DL+QEG GL++ ++FD G + ++A WI+
Sbjct: 54 KLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRA 113
Query: 429 AVRKSLSDQSRTIRL 443
+ + + R +++
Sbjct: 114 EIHEFILKNWRIVKI 128
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 29/79 (36%), Positives = 45/79 (56%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K +I N+RLV+ IA+ ++ G+N++DLV G GL++ F+ K K +TYA I
Sbjct: 57 KSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRCI 116
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+ + L S+ IRL V
Sbjct: 117 ENEILMYLRRNSK-IRLEV 134
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 128 (50.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
+D ++ SN+RLV S+ + + G DL Q GC GL++ +KFD S KFSTYA I
Sbjct: 34 RDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPMI 93
Query: 427 KQAVRKSLSD 436
+++ L D
Sbjct: 94 IGEIQRFLRD 103
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 352 DQRELRRR--LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++REL R ++ I +++ + +RLV+ + ++ G L DL EG GL++ +
Sbjct: 30 EERELIDRWFVHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKN 89
Query: 410 FDASKGFKFSTYAHWWIKQAVRK 432
F+ + G +TYA WWIK A+ +
Sbjct: 90 FNPTLGHGIATYAIWWIKAAINE 112
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 353 QRELRRRL-NYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ +L RL N L ++I S++R VI +AK Y G G+ DLVQEG GL++ ++F
Sbjct: 33 EHDLATRLYNENDLQAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRF 92
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
+ G + ++A WIK + + + R +++
Sbjct: 93 NPEVGVRLVSFAVHWIKAEIHEFVLKNWRIVKV 125
>TIGR_CMR|BA_4566 [details] [associations]
symbol:BA_4566 "RNA polymerase sigma-27 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
RefSeq:NP_846788.1 RefSeq:YP_021211.1 RefSeq:YP_030484.1
ProteinModelPortal:P62182 DNASU:1088335
EnsemblBacteria:EBBACT00000010179 EnsemblBacteria:EBBACT00000016313
EnsemblBacteria:EBBACT00000019367 GeneID:1088335 GeneID:2818972
GeneID:2852916 KEGG:ban:BA_4566 KEGG:bar:GBAA_4566 KEGG:bat:BAS4236
HOGENOM:HOG000270274 KO:K03091 OMA:WWIRESI ProtClustDB:PRK05803
BioCyc:BANT260799:GJAJ-4292-MONOMER
BioCyc:BANT261594:GJ7F-4441-MONOMER TIGRFAMs:TIGR02846
Uniprot:P62182
Length = 237
Score = 119 (46.9 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 31/108 (28%), Positives = 52/108 (48%)
Query: 352 DQRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
D+R+ + G ++ +I N+RLV I K ++ G + +DL+ G GL++ E +
Sbjct: 34 DERKYLELMEQGDAQARNLLIEHNLRLVAHIVKKFENTGEDAEDLISIGTIGLIKAIESY 93
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNLQSEGS 458
A KG K +TYA I+ + L +T + V H EG+
Sbjct: 94 SAGKGTKLATYAARCIENEILMHLRVLKKT-KKDVSLHDPIGQDKEGN 140
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
+I N+RLV+ IA+ ++ G+N++DL+ G GL++ F+ K K +TYA I+
Sbjct: 62 LIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEKKIKLATYASRCIENE 121
Query: 430 V 430
+
Sbjct: 122 I 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 458 370 0.00086 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 612 (65 KB)
Total size of DFA: 236 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.27u 0.17s 27.44t Elapsed: 00:00:01
Total cpu time: 27.28u 0.17s 27.45t Elapsed: 00:00:01
Start: Sat May 11 07:13:11 2013 End: Sat May 11 07:13:12 2013