BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012710
(458 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 302/423 (71%), Positives = 348/423 (82%), Gaps = 15/423 (3%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKCQPDTFSIHFR + H + + +KS+EPI +R C+LSTTSPSTSTA
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPS EA S+++A N WTY G++LATETL TSDEAVIAAA+
Sbjct: 59 VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAAA 109
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
AEAVALARAAVKVAKDAAL+V + SA+ +SK ++S + + S W Q TE ERA IIGD
Sbjct: 110 AEAVALARAAVKVAKDAALLVKNFPSAETESK--LTSPSTIDASRWPQFTETERARIIGD 167
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
SV E P EE S Q + +S LE TH+EL+LL++Q+S+ IAVRSRRQTERKARR RA
Sbjct: 168 SVATETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAA++V+SVK GSTS++KR S+QEVDYSDPLRYLR TTS+SRLLTA+EE++LSA IQDL
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE L+E L+ER GG PTFAQWAAAAGVDQR LR+R+N+G +CKDKMI SNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407
Query: 443 LPV 445
LP
Sbjct: 408 LPF 410
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 276/429 (64%), Positives = 328/429 (76%), Gaps = 15/429 (3%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSH-------PSKSKEPICFRTHCVLSTTSPS 76
MSCLLPQFKC P+TFSI F+T N+ HH S +K ++P RT C+LS SP
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 77 TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136
TST T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA
Sbjct: 61 TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 112
Query: 137 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERER 196
IAAA+AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ER
Sbjct: 113 SIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESER 172
Query: 197 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 256
A IIG+ V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKA
Sbjct: 173 ADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKA 232
Query: 257 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 316
RRTRAAEK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS
Sbjct: 233 RRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELS 292
Query: 317 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
GIQDLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIR
Sbjct: 293 EGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIR 352
Query: 377 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 436
LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSD
Sbjct: 353 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSD 412
Query: 437 QSRTIRLPV 445
QSRTIRLP
Sbjct: 413 QSRTIRLPF 421
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 295/424 (69%), Positives = 341/424 (80%), Gaps = 18/424 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNH-QHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMT 82
MSCLLPQFKCQPDTFS+HFR L +H +H+ P CVLS+ SPST+
Sbjct: 1 MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP-----------QCVLSSASPSTA---- 45
Query: 83 TVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTS-DEAVIAAA 141
VLD+EKLRLPSLE HS++++ANR WTY G +GP + GTSLA ETL + DEAVIAAA
Sbjct: 46 -VLDLEKLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAA 104
Query: 142 SAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG 201
+AEAVALARAAVKVAKDAA M +++S K ++K I+S+ D+ +SMW+ LTE+ERA IIG
Sbjct: 105 AAEAVALARAAVKVAKDAAEMAKNYSSMKKETKIPIASTTDSFSSMWSLLTEKERADIIG 164
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E EEYS Q P + LEPT EEL LL++Q+S+ IAVRS+RQTERKARR RA
Sbjct: 165 DSVSAETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARA 224
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKAAANV+SVKSGSTS++KR +QEVD SDPLR+ R +SSSRLL+A EE++LS GIQD
Sbjct: 225 AEKAAANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQD 284
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE + E L ER GG P+FAQWAAAAGVDQ LR+RLNYGILCKDKMI SN+RLVISI
Sbjct: 285 LLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISI 344
Query: 382 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441
AKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRTI
Sbjct: 345 AKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTI 404
Query: 442 RLPV 445
RLP
Sbjct: 405 RLPF 408
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 304/424 (71%), Positives = 336/424 (79%), Gaps = 10/424 (2%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKC PDTFS H + LH SK++E I FR C LSTTSP ST+ T
Sbjct: 1 MSCLLPQFKCPPDTFSTHPK-LHIL-------SKNREAIYFRVQCALSTTSPPLSTSTTA 52
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAAA+
Sbjct: 53 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAA 112
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASIIG 201
AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I+G
Sbjct: 113 AEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG 172
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR RA
Sbjct: 173 DSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARA 232
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GIQD
Sbjct: 233 AEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQD 292
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVISI
Sbjct: 293 LLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISI 352
Query: 382 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441
AKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353 AKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412
Query: 442 RLPV 445
RLP
Sbjct: 413 RLPF 416
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 302/424 (71%), Positives = 334/424 (78%), Gaps = 7/424 (1%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKC PDTFS H + H K++E I FR C LSTTSP ST+ T
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKL-----HILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA 55
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
VLD+EKLRLPSLE+HSN+VAA+R WTY G VGP TE N +LA ETL TS+EAVIAAA+
Sbjct: 56 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAA 115
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPA-ISSSADTNTSMWAQLTERERASIIG 201
AEAVALA+AAVKVAKDAA +V +NSAK ++KPA S DT+ Q TE ER I+G
Sbjct: 116 AEAVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILG 175
Query: 202 DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 261
DSV E + S Q S DLEPT EEL+LLE + S+SI VRS RQ ERKARR RA
Sbjct: 176 DSVGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARA 235
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
AEKA+A V+SV+SGSTSRRKR S+QEVDYSDPLRYLR TTS+SRLLTA EE++LS GIQD
Sbjct: 236 AEKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQD 295
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LLKLE L+E L ER G PTFAQWAAAAGVDQ+ LRRR NYGI CKDKMI SNIRLVISI
Sbjct: 296 LLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISI 355
Query: 382 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441
AKNYQGAGMN+QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 356 AKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 415
Query: 442 RLPV 445
RLP
Sbjct: 416 RLPF 419
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 281/423 (66%), Positives = 326/423 (77%), Gaps = 19/423 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLPQFKCQPD+FSIH + EP CFR C LS+ + + T
Sbjct: 1 MSCLLPQFKCQPDSFSIH---------------SNGEPFCFRAQCALSSA---SPSTSTA 42
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLT-SDEAVIAAAS 142
VL++EKLRLPSLE+HS+++AANR WTY G +GP E GTSLATETL +DEAVIAAA+
Sbjct: 43 VLNLEKLRLPSLESHSDSIAANRPWTYIGGIGPPKEPLFGTSLATETLIINDEAVIAAAA 102
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
AEAVALARAAVKVAKDAA M ++ S ++K I+S+AD+ +SMW+ LT +ERA IIG
Sbjct: 103 AEAVALARAAVKVAKDAAEMAKNYCSVNTETKIPIASTADSFSSMWSLLTGKERADIIGV 162
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
S E EE S Q P +S PTHEEL LLE+Q+S+SI VRS+RQT+RKA+R RAA
Sbjct: 163 SFSAETGLREECSTQYPTEESDCFGPTHEELALLEKQLSESIVVRSKRQTQRKAKRARAA 222
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAAAN + +KSGS ++KR VQEVD SDPLR+ R ++SSRLL+A EE++LS GIQDL
Sbjct: 223 EKAAANFVFMKSGSACKKKRVPVQEVDQSDPLRFFRGASTSSRLLSATEEVELSEGIQDL 282
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE + E L ER GG PTFAQWAAAA VDQ LR+RLNY ILCKDKMI SNIRLVISIA
Sbjct: 283 LKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAILCKDKMIKSNIRLVISIA 342
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
KNYQGAGMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+QAVR+SLSDQSRTIR
Sbjct: 343 KNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHWWIRQAVRRSLSDQSRTIR 402
Query: 443 LPV 445
LP
Sbjct: 403 LPF 405
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 257/428 (60%), Positives = 311/428 (72%), Gaps = 26/428 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLP FKCQPD+FS+HFRT ++ HS K F+ C +ST+ P +T+
Sbjct: 3 SCLLPNFKCQPDSFSVHFRTSYSVSKHS------KGSAFFQPQCAVSTSPP----LLTST 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S++ ++R WTY +GPSTE +LA+ETL TSDEAV+AAA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAKYLEALASETLLTSDEAVVAAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAA+KVAKDA L N HN+ K ++SS+AD S W Q TE+ERA I+G
Sbjct: 113 EAVALARAALKVAKDATLFGNSHNT-----KLSVSSAADKR-SKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARR 258
D+ +V S + S DL P K E++S S AVRS RQTERKARR
Sbjct: 167 AVSDTGVVSDRITAPGSLECNKEASDDLTPAE---KQEVEKLSVSSAVRSTRQTERKARR 223
Query: 259 TRAAEKAAANVMS-VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+ EK A+ + S VK+GS+SR+KR + QE+D++DPLRYLR TTSSS+LLTA EE QLS
Sbjct: 224 VKGLEKTASGMQSSVKTGSSSRKKRVASQEIDHNDPLRYLRMTTSSSKLLTAREEQQLSE 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ERCG PTF+QWA+AAGVD++ LR+R+ +G CKD+MI SNIRL
Sbjct: 284 GIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGTQCKDRMIKSNIRL 343
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
VISIAKNYQGAGM+ QDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 344 VISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 403
Query: 438 SRTIRLPV 445
SR IRLP
Sbjct: 404 SRMIRLPF 411
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 262/425 (61%), Positives = 311/425 (73%), Gaps = 20/425 (4%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT + H+ K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCARKHN------KGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EAVALARAAVKVAKDA L N +N+ ISS+AD S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNT-----NLLISSTADKR-SKWDQFTEKERAGILGHL 166
Query: 204 VIVEAAPEEEYSEQQPLNKSA--DLEPTHEELKLLEEQV-SQSIAVRSRRQTERKARRTR 260
+ + + NK + DLE +E L E+ S S+AVRS RQTERKARR +
Sbjct: 167 AVSDNGIVSDKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAK 226
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
EK A+ + SVK+GS R+KR QEVD++DPLRYLR TTSSS+LLT EE +LSAGIQ
Sbjct: 227 GLEKTASGIPSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQ 286
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L+ L+ERCG PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRLVIS
Sbjct: 287 DLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVIS 346
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR
Sbjct: 347 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRM 406
Query: 441 IRLPV 445
IRLP
Sbjct: 407 IRLPF 411
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 259/428 (60%), Positives = 311/428 (72%), Gaps = 26/428 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S S+AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSA
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRL
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 343
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 344 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 403
Query: 438 SRTIRLPV 445
SR IRLP
Sbjct: 404 SRMIRLPF 411
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 254/423 (60%), Positives = 305/423 (72%), Gaps = 25/423 (5%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
MSCLLP F C DTF H L +H SK++ +CF+ CVLS TSPST
Sbjct: 1 MSCLLPHFNCHLDTFRTHPYAL------PTHLSKTRPNLCFQPQCVLSATSPST------ 48
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 142
+L +EK +L +L+A S+ N W Y A N ++L+ E+L T++EAVI AA+
Sbjct: 49 LLSLEK-KL-ALDAPSDP---NTSWPYIAAA------NFKSTLSAESLLTNEEAVIVAAA 97
Query: 143 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGD 202
+EA+ALA+AA KVAKDAAL+V A+ + K +SS +D W + E E + +
Sbjct: 98 SEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQME-EVEDGVAE 156
Query: 203 SVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAA 262
+ A E + P + +DLEP+HEEL+ L+EQ+S SIAVRSRRQTERKA+R RA
Sbjct: 157 ESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRAT 216
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKA N S K GS+SRRKR S+QEVDYSDPLRYLR TTS+SRLLT EE++LSAGIQDL
Sbjct: 217 EKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDL 276
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
LKLE ++E L+ER G PTFAQWAA AGVDQ+ LR+RLNYGI CKDKMI SNIRLVISIA
Sbjct: 277 LKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIA 336
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
KNYQG+GMNLQDLVQEGCRGLV+GAEKFD +KGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 337 KNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 396
Query: 443 LPV 445
LP
Sbjct: 397 LPF 399
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 259/430 (60%), Positives = 311/430 (72%), Gaps = 28/430 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N +N+ ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNNTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S S+AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVSLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRL--LTANEEMQL 315
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+L LT EE +L
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHEL 283
Query: 316 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375
SAGIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNI
Sbjct: 284 SAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNI 343
Query: 376 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435
RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLS
Sbjct: 344 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLS 403
Query: 436 DQSRTIRLPV 445
DQSR IRLP
Sbjct: 404 DQSRMIRLPF 413
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 257/428 (60%), Positives = 309/428 (72%), Gaps = 26/428 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTTV 84
SCLLPQFKC PD+FSIHFRT P +K + F+ C +ST SP+ +T++
Sbjct: 3 SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPAL---LTSM 52
Query: 85 LDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASA 143
LDV KLRLPS + S+++ ++RQWTY GPSTE +LA+ETL TSDEAV+ AA+A
Sbjct: 53 LDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAA 112
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIG-- 201
EAVALARAAVKVAKDA L N + + ++SS S W Q TE+ERA I+G
Sbjct: 113 EAVALARAAVKVAKDATLFKNSNYTN------LLTSSTADKRSKWDQFTEKERAGILGHL 166
Query: 202 ---DSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
D+ IV S ++ + DLE +E L E+ S +AVRS RQTERKAR
Sbjct: 167 AVSDNGIVSDKITASASNKESI---GDLESEKQEEVELLEEQPSVGLAVRSTRQTERKAR 223
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R + EK A+ + SVK+GS+ ++KR QEVD++DPLRYLR TTSSS+LLT EE +LSA
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSA 283
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDLLKLE L+ L+ER G PTFAQWA+AAGVDQ+ LR+R+++G LCKDKMI SNIRL
Sbjct: 284 GIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRL 343
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 344 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 403
Query: 438 SRTIRLPV 445
SR IRLP
Sbjct: 404 SRMIRLPF 411
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 249/425 (58%), Positives = 298/425 (70%), Gaps = 12/425 (2%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPS--KSKEPICFRTHCVLSTTSPSTSTAM 81
M+CLLPQFKCQPDTFSI LH SS S ++++ +CFR C +ST P T+ A
Sbjct: 1 MTCLLPQFKCQPDTFSIS-SVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAE 59
Query: 82 TTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAA 141
T++ DVEKLRLP +E++SN+++A Q T+ +G E T+L + L +E + AA
Sbjct: 60 TSIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 142 SAEAVALARAAVKVAKDAA-LMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASII 200
+A A A LM + KP SK S + AQL E E+ +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSG----AQLLENEQ---V 172
Query: 201 GDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTR 260
G E + E E +++ AD+EPT EEL+LLE ++ +SI VRS RQ ERKARR R
Sbjct: 173 GSMRNFEGS-ENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRAR 231
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
AAEK A+NV+SVK GS SR+KR SVQEVDYSDPLRYLR T+SSRLLT++EE +LSAGIQ
Sbjct: 232 AAEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQ 291
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L + L R G SP+F QWAAAAG+DQR LRRRLN+G CKDKMI SN+RLVIS
Sbjct: 292 DLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVIS 351
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
IAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 352 IAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 411
Query: 441 IRLPV 445
IRLP
Sbjct: 412 IRLPF 416
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 287/428 (67%), Gaps = 28/428 (6%)
Query: 25 SCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRT-HCVLSTTSPSTSTAMTT 83
SCLLPQF C PDTF I T +H HH H + P T HC+LS++ T
Sbjct: 7 SCLLPQFICNPDTF-IRIPTHRHHHHHHHHLFLLQSPKTTTTRHCILSSS--------TA 57
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
+LD + P+ +S W Y +++ + +S LTS++AVIAAA++
Sbjct: 58 LLDFKFDVAPAESENSPP------WPY------ASQAHSSSSSVESLLTSEDAVIAAAAS 105
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EA+ LA+AA K+AKDA L+VN+ + P + S+ + W Q E + S
Sbjct: 106 EALTLAKAAAKLAKDATLLVNNKLPQHNQQPPQLPSTPENLLLKWVQHMEAAEYAAAAVS 165
Query: 204 VIVEAAPEE-----EYSEQQPLNKSADLEPTHEELKLLEEQV-SQSIAVRSRRQTERKAR 257
+ A + S Q + + D EPT EEL+ +EEQ+ SI RS RQTERKAR
Sbjct: 166 IATGPAGPDIMEHLHISPNQEDDFNDDDEPTSEELEDVEEQLYDTSIDARSGRQTERKAR 225
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
R RA+ KAA N++S +SGST+R+KR QEVDYSDPLRYLR TT ++RLLT +EE++ S
Sbjct: 226 RVRASGKAATNIVSFRSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTTSEEIKFSE 285
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRL 377
GIQDL+KLE L+E L+E+CGG PTFAQWA AGVDQ+ LR+RLNYG+ CK+KMI SNIRL
Sbjct: 286 GIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRL 345
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
VIS+AKNYQG+GM+LQDLVQEGCRGLVRGAEK+DASKGFKFSTYAHWWIKQAVRKSLS Q
Sbjct: 346 VISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQ 405
Query: 438 SRTIRLPV 445
SRTIRLP
Sbjct: 406 SRTIRLPF 413
>gi|449523964|ref|XP_004168993.1| PREDICTED: RNA polymerase sigma factor sigB-like, partial [Cucumis
sativus]
Length = 296
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 166/304 (54%), Positives = 215/304 (70%), Gaps = 15/304 (4%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSH-PS------KSKEPICFRTHCVLSTTSPS 76
MSCLLPQFKC P+TFSI F+T N+ HH S P+ K ++P RT C+LS SP
Sbjct: 1 MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60
Query: 77 TSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEA 136
TST T LDV++L+LP + ++++V+ R +Y GAV +SLA+ LTS+EA
Sbjct: 61 TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVE--------SSLASTLLTSEEA 112
Query: 137 VIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERER 196
IAAA+AEAV LA+AAVKVA+DAAL+ N+ NS++ +K S D WAQ E ER
Sbjct: 113 SIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESER 172
Query: 197 ASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKA 256
A IIG+ V V P E + + +S D+EPT EEL+LL++++S+SI V+S+RQTERKA
Sbjct: 173 ADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKA 232
Query: 257 RRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS 316
RRTRAAEK +V+S KSGS+SR+KR SVQEVDYSDPLRYLRATT++SRLLTA EE++LS
Sbjct: 233 RRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELS 292
Query: 317 AGIQ 320
GIQ
Sbjct: 293 EGIQ 296
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 157/202 (77%), Gaps = 1/202 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTE +ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTEGRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
HWWIKQA+RKS+S+QS+ RLP
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 180/421 (42%), Positives = 246/421 (58%), Gaps = 45/421 (10%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVLSTTSPSTSTAMTT 83
M+CL PQFK P H SS S R HC + TS A+
Sbjct: 1 MACLAPQFKWAPSA--------AAHMPSSSSSSSYSRCSALRVHCAV------TSAAV-- 44
Query: 84 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAVIAAASA 143
+E +N AA + Y P+ + N +LA+E L ++EAV+AAA+A
Sbjct: 45 -----------VEDRTNGSAAQLRLAY---AAPAIQRNFEATLASEALLNEEAVVAAAAA 90
Query: 144 EAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERERASIIGDS 203
EAVALARAA + A+D +V +N +P I + + ++ E S D
Sbjct: 91 EAVALARAAAEAAQDVVQIVQRNNH-----QPVIRPKKCVDNYLANEILRTEMRSSSPD- 144
Query: 204 VIVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAE 263
+ P EY + + + D EL Q +++IAV+S RQ+ERKARRTRAA
Sbjct: 145 -MYANNPLMEYLDSYGIMDAED------ELDAYA-QYTENIAVKSARQSERKARRTRAAI 196
Query: 264 KAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL 323
KA+ + + + + S +K+ S +PL L T RLLTA EE++ S GIQDLL
Sbjct: 197 KASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLWKMTGR-RLLTAKEEVEFSEGIQDLL 255
Query: 324 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAK 383
KLE ++ L E GG PTF+QWA AAGVD++ LR+RLNYGI CK++M+TSN+RLVISIA+
Sbjct: 256 KLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNYGIYCKNRMVTSNVRLVISIAR 315
Query: 384 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
++G GM+ DL+QEG +GL+RGAEKFD+SKGF+FSTY+HWWIKQA+RKS+S+QS+ RL
Sbjct: 316 EFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYSHWWIKQAMRKSVSEQSQIFRL 375
Query: 444 P 444
P
Sbjct: 376 P 376
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/206 (58%), Positives = 159/206 (77%), Gaps = 1/206 (0%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLR 298
Q +++IAV+S RQ+ERKARRTRAA KA+ + + + + S +K+ S +PL L
Sbjct: 172 QYTENIAVKSARQSERKARRTRAAIKASTTLHASQKVALSSKKKRSKGSSSSMNPLGSLW 231
Query: 299 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 358
T RLLTA EE++ S GIQDLLKLE ++ L E GG PTF+QWA AAGVD++ LR+
Sbjct: 232 KMTGR-RLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRK 290
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
RLNYGI CK++M+TSN+RLVISIA+ ++G GM+ DL+QEG +GL+RGAEKFD+SKGF+F
Sbjct: 291 RLNYGIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRF 350
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLP 444
STY+HWWIKQA+RKS+S+QS+ RLP
Sbjct: 351 STYSHWWIKQAMRKSVSEQSQIFRLP 376
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/125 (88%), Positives = 113/125 (90%)
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
DLLKLE L+E L ER G PTFAQWAAAAGV+QR LR+RLNYG LCKDKMI SNIRLVIS
Sbjct: 3 DLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVIS 62
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
I KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRT
Sbjct: 63 IXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRT 122
Query: 441 IRLPV 445
IRLP
Sbjct: 123 IRLPF 127
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/207 (56%), Positives = 153/207 (73%), Gaps = 9/207 (4%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMS---VKSGSTSRRKRPSVQEVDYSDPLRYL 297
S ++AV+S R+TERKARR RAA KAA S V + ST +++ Q PL
Sbjct: 165 SIAVAVKSARRTERKARRVRAAMKAAKCFSSRNAVGASSTRKKRLKGCQ-----TPLGCF 219
Query: 298 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357
T RLLTA +E++ S GIQDLLKLE +++ +++ GG PTF+QWAAAAG D+ LR
Sbjct: 220 YKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLR 278
Query: 358 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 417
RRLN+G+ CK++M+ SN+RLVISIAK ++G GM DL+QEG +GL+RGAEKFDASKGF+
Sbjct: 279 RRLNHGVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFR 338
Query: 418 FSTYAHWWIKQAVRKSLSDQSRTIRLP 444
FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 339 FSTYSHWWIKQAIRKSVLEQTQIIRLP 365
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 186/439 (42%), Positives = 258/439 (58%), Gaps = 68/439 (15%)
Query: 24 MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPIC-----FRTHCVLSTTSPSTS 78
M+CL P FK P +FS T H +QH S S S C R C + +
Sbjct: 1 MACLAPHFKWAPSSFS----TTHAYQHPSPSSSSSNSGRCSGRRLIRVQC-------AAT 49
Query: 79 TAMTTVLDVEKLRLPSLE-AHSNAVAANRQWTYFGAVGPSTEENLGTSLATETLTSDEAV 137
+A V+D E+ L +S+ +A P + N ++LA+ET+ + EAV
Sbjct: 50 SAAAAVVDGERAAGGPLHLVYSSPESA-----------PVLQRNFESTLASETVLNKEAV 98
Query: 138 IAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQLTERE-- 195
+ AA+AEAVALARAA + A++ MV K S+P + + ++ E
Sbjct: 99 VTAAAAEAVALARAAAEAAQEVVHMVQ-----KSSSQPVFRKKGEVENYLAKEILRTEML 153
Query: 196 --RASIIGDSVIVEAAPEEEYSEQQPLNKSADLEPT---HEELKLLEE-QVSQSIAVRSR 249
RA D V+ S LEP +E +L ++ Q +++IAV+S
Sbjct: 154 SSRAYEYSDGVL-----------------SGVLEPYGIPSDEAELDDDKQDAENIAVKSA 196
Query: 250 RQTERKARRTRAAEKAAANVM-SVKSGSTSRRKR---PSVQEVDYSDPLRYLRATTSSSR 305
RQ+ER+ARRTRA KAA V S+K ++S++KR PS +PL L T +
Sbjct: 197 RQSERRARRTRATMKAAITVRGSLKLVTSSKKKRSKGPSTM-----NPLGSLWKMTGR-K 250
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++LS GIQDLLKLE ++ L+E GG PTF QWAAAAG D+ LR+RL++GI
Sbjct: 251 LLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDHGIH 310
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
CK++M+TSN+RLVISIA+ ++G G+ L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWW
Sbjct: 311 CKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWW 370
Query: 426 IKQAVRKSLSDQSRTIRLP 444
IKQA+RKS+S+Q++ RLP
Sbjct: 371 IKQAMRKSVSEQTQIFRLP 389
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/202 (61%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
HWWIKQA+RKS+S+QS+ RLP
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/202 (61%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
HWWIKQA+RKS+S+QS+ RLP
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/202 (61%), Positives = 158/202 (78%), Gaps = 1/202 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 200 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 259
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 260 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
GI CK++M+TSN+RLVISIA+ ++G GM L DL+QEG +GL+RGAEKFDASKGF+FSTY+
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
HWWIKQA+RKS+S+QS+ RLP
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLP 400
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/237 (54%), Positives = 174/237 (73%), Gaps = 8/237 (3%)
Query: 212 EEYSEQQPLNKSADLEPTH----EELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA 267
+EYS+ L DLE +H +E++L + Q +SIAV+S RQ+ER+ARRTRAA KAA
Sbjct: 157 DEYSDDVLLE---DLESSHGVLNDEVELDDTQDYKSIAVKSERQSERRARRTRAAIKAAT 213
Query: 268 NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 327
V S + ++S +K+ S +PL L T +LLTA EE++LS GIQDLLKLE
Sbjct: 214 TVRSSQKLASSSKKKRSKGPTTSMNPLGSLWKLTGR-KLLTAKEEVELSNGIQDLLKLEA 272
Query: 328 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
++ L+E G PTF QWAAAAG D++ LR+RL +GI K++M+TSN+RLVISIA+ ++G
Sbjct: 273 IQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAHGIYSKNRMVTSNVRLVISIAREFEG 332
Query: 388 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
G+ L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+S+Q++ RLP
Sbjct: 333 PGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAMRKSVSEQTQIFRLP 389
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 152/211 (72%), Gaps = 8/211 (3%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 377
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 152/211 (72%), Gaps = 8/211 (3%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 129 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 184
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 185 LGCFYKMTGR-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 243
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 244 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 303
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 304 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 334
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/211 (54%), Positives = 152/211 (72%), Gaps = 8/211 (3%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAE---KAAANVMSVKSGSTSRRKRPSVQEVDYSDP 293
+EQ Q +AV+S RQ+ER+ARR RAA K+ + V + S++R+KR P
Sbjct: 172 DEQCVQGVAVKSVRQSERRARRVRAAMKAAKSFSGRNPVAASSSARKKRLK----GCRSP 227
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
L T RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+
Sbjct: 228 LGCFYKMTGW-RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDE 286
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
LR+RLNYGI CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDAS
Sbjct: 287 NTLRKRLNYGISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDAS 346
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
KGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 347 KGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 377
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 142/320 (44%), Positives = 195/320 (60%), Gaps = 27/320 (8%)
Query: 129 ETLTSDEAVIAAASAEAVALARAAVKVAKDAALMV-NHHNSAKPKSKPAISSSADTNTSM 187
E L + EAV+AAA+ + +L A +VA + A M N H +A P DT S
Sbjct: 68 EALLNKEAVVAAAAGKP-SLWLAQAEVAGEVARMAQNDHPAALPPRD-------DTVDSF 119
Query: 188 WAQLTERERASIIGDSV-IVEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAV 246
++ R + +VE EE+S D + H S ++ V
Sbjct: 120 LSREVLRSEVGLDARRAGLVEMLEGEEHSSIFSDESEDDDDGGH----------SIAVTV 169
Query: 247 RSRRQTERKARRTRAAEKAAANVMSVK--SGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
+S R++ER+ARR RAA K A S+K S++RRKR PL L T
Sbjct: 170 KSARRSERRARRVRAAMKTAKCSSSMKPVGASSTRRKRLK----GCLTPLGCLYKMTGP- 224
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA +E++ S GIQDLLKLE +++ +++ G PTF+QWAAAAG D+ LRRRLN+G+
Sbjct: 225 RLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGV 284
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
CK++M+ SN+RLVISIAK ++G GM DL+Q+G +GL+RGAEKFDASKGF+FSTY+HW
Sbjct: 285 YCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHW 344
Query: 425 WIKQAVRKSLSDQSRTIRLP 444
WIKQA+RKS+ +Q++ IRLP
Sbjct: 345 WIKQAIRKSVLEQTQIIRLP 364
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 91/140 (65%), Positives = 116/140 (82%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA +E++ S GIQDLLKLE +++ L+ GG PTF+QWA AAG D+ LR+RLNYGI
Sbjct: 41 RLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNYGI 100
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
CK+ M+ SN+RLVISIA+ ++G GM DL+QEG +GLVRGAEKFDASKGF+FSTY+HW
Sbjct: 101 SCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYSHW 160
Query: 425 WIKQAVRKSLSDQSRTIRLP 444
WIKQA+RKS+ +Q++ IRLP
Sbjct: 161 WIKQAIRKSVLEQTQIIRLP 180
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 130/175 (74%), Gaps = 5/175 (2%)
Query: 270 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
M S++RRKR PL L T RLLTA +E++ S GIQDLLKLE ++
Sbjct: 196 MKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQ 250
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 251 KEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 310
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
M DL+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 311 MEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 365
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 98/175 (56%), Positives = 130/175 (74%), Gaps = 5/175 (2%)
Query: 270 MSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
M S++RRKR PL L T RLLTA +E++ S GIQDLLKLE ++
Sbjct: 96 MKPVGASSTRRKRLK----GCLTPLGCLYKMTGP-RLLTAEQEVEFSEGIQDLLKLEAIQ 150
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ +++ G PTF+QWAAAAG D+ LRRRLN+G+ CK++M+ SN+RLVISIAK ++G G
Sbjct: 151 KEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNHGVYCKNRMVKSNVRLVISIAKEHEGPG 210
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
M DL+Q+G +GL+RGAEKFDASKGF+FSTY+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 211 MEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYSHWWIKQAIRKSVLEQTQIIRLP 265
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 90/143 (62%), Positives = 117/143 (81%)
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
S+ RLLTA +E++LS GIQD LKLE +++ ++ GG PTF QWAAAAG D+ LR+RL+
Sbjct: 232 SARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLS 291
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
YGI CK+ M+ SN+RLVISIAK ++G G DL+QEG +GL+RGAEKFDASKGF+FSTY
Sbjct: 292 YGIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTY 351
Query: 422 AHWWIKQAVRKSLSDQSRTIRLP 444
+HWWIKQA+RKS+ +Q++ IRLP
Sbjct: 352 SHWWIKQAIRKSVLEQTQIIRLP 374
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 147/206 (71%), Gaps = 5/206 (2%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRA 299
S +IAVRS R+ ER +R RA KA + + S +++ +P+ D DP+R YLR
Sbjct: 255 SYNIAVRSNRRRERLLKRERALVKADKAATAPPTTSKAKKSQPAY---DPQDPVRAYLR- 310
Query: 300 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 359
++LLT++EE++L+ GIQDLL++E ++ L E+ G PT +WA A G ++ L R
Sbjct: 311 DIGKTKLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESR 370
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
+ G CKD+M+ SN+RLV+SIAK YQG GM +QDL+QEG GL+RGAEKFD ++GFKFS
Sbjct: 371 IKSGQACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFS 430
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPV 445
TYAHWWI+QA+ ++++DQSRTIRLPV
Sbjct: 431 TYAHWWIRQAITRAIADQSRTIRLPV 456
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 251/446 (56%), Gaps = 37/446 (8%)
Query: 24 MSCLLPQ-------FKCQPDTFS--IHFR-TLHNHQHHSSHPSKSKEPICFRTHCVLSTT 73
M+ +LP+ F C +T S I F+ + NH S + +E C T VLS T
Sbjct: 1 MAWMLPRTGSPSIHFLCASETSSMPIGFKLVMKNH----SCALRIREASCCETTTVLSVT 56
Query: 74 SPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQWTY-FGAVGPSTEENLGTSLATETLT 132
+ + T K + P+ +AHS++++ Y + T+ ++ ++ATETL
Sbjct: 57 AVPSFT--------RKDQAPAAKAHSSSLSIIEDVQYNTEPINQQTKPSMKVTIATETLL 108
Query: 133 SDE-AVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISSSADTNTSMWAQL 191
E A I AA+AEAVALA+AAVK A+D + + + S AD A+L
Sbjct: 109 QSEMAGIEAAAAEAVALAKAAVKAARDVVALSEGQTPLESEYLKDFPSEADLLRIERARL 168
Query: 192 TERERASIIGDSVIVE-----------AAPEEEYSEQQPLNKSADLEPTHEELKLLEEQV 240
TE ER + S V+ + S L + ++ + Q
Sbjct: 169 TEMERLEAMNFSNRVQLFEIHSEEECESQSPSSSSSTPALGRECNISEHAANSLVSPLQK 228
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYLRA 299
+ +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R LR
Sbjct: 229 TYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLLR- 287
Query: 300 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 359
SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+ R
Sbjct: 288 DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMR 347
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
L G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFKFS
Sbjct: 348 LEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFS 407
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPV 445
TYA+WWI+Q++ K+L++QSRTIRLPV
Sbjct: 408 TYAYWWIRQSITKALTEQSRTIRLPV 433
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/158 (60%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
D SDP+R YLR ++LLTA EE+ LS IQDLLKLE ++ L G + T +W+
Sbjct: 259 DPSDPVRAYLR-DIGRTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSR 317
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A G++Q RL G KDKM+ SN+RLV+SIAKNYQG GM LQDL+QEG GLVRGA
Sbjct: 318 AVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGA 377
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYAHWWI+QAV +S++DQSRTIRLP+
Sbjct: 378 EKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPI 415
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 151/208 (72%), Gaps = 2/208 (0%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDY-SDPLRYL 297
Q + +I RS RQ ER+ARR RA+EKAA+ ++ +SR+ + ++ + SD +R L
Sbjct: 130 QKTYNITARSSRQMERRARRARASEKAASVASAISPTRSSRKGKKAISSKGHISDSIRLL 189
Query: 298 RATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR 357
R SSSRLLTA+EE++LS GIQDL+KL+ +R E+ G PT AQWA GVDQ+ L+
Sbjct: 190 R-DWSSSRLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLK 248
Query: 358 RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK 417
RL G DK+I N+RLVIS+AKNYQ G++LQDL+Q G GL+R AEKFD S+GFK
Sbjct: 249 MRLEVGRDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFK 308
Query: 418 FSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FSTYA+WWI+Q++ K+L++QSRTIRLPV
Sbjct: 309 FSTYAYWWIRQSITKALTEQSRTIRLPV 336
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 61 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 120
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 391
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 121 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 180
Query: 392 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 181 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 120/174 (68%), Gaps = 1/174 (0%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+ TSRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE
Sbjct: 45 RKAKTSRRKETATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQ 104
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 391
L+E PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 105 LTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 164
Query: 392 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 165 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 218
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 116/167 (69%), Gaps = 8/167 (4%)
Query: 281 KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
KRPS +D +R S LL A +E++L+ IQDL+ LE +RE L E G
Sbjct: 196 KRPS------TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 341 TFA--QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 398
+ QWAAAAG++ LR+RL+ G K++MI +N+RLV+SIAK Y M+ QDL+QE
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 399 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLPV
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPV 356
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 4/158 (2%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSPTFAQWAA 347
+DP+R YLR ++LLTA+EE+ LS IQ DLL LE ++ L G P+ +W+
Sbjct: 273 TDPVRAYLR-DIGKTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSR 331
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A G++Q R+ G KDKM+ SN+RLV+SI KNYQG GM L DL+QEG GL+RGA
Sbjct: 332 AVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGA 391
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYAHWWI+QAV ++++DQSR IRLP+
Sbjct: 392 EKFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPI 429
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 134/215 (62%), Gaps = 11/215 (5%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPL-RYLRA 299
S+++AV+S R+ ER +R RA EKA ++ S + S+ + SDP+ YLR
Sbjct: 207 SRNVAVKSNRKNERFRKRERALEKAGKVAFALASSPPVPKADKSLIKHRLSDPICSYLR- 265
Query: 300 TTSSSRLLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+S+LLTA EE+ LS IQ LKLE +R L G PT ++W+ A G
Sbjct: 266 DVKNSKLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVG 325
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
++Q R+ G KDK++ SN+RLV+SI KNYQG GM L DL+Q G GL+RGAEKF
Sbjct: 326 MNQTLFELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKF 385
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D GFKFSTYA WWI+QAV +S++DQSR IRLPV
Sbjct: 386 DPEMGFKFSTYATWWIRQAVTRSITDQSRIIRLPV 420
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
SRRK + ++ Y+ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 54 SRRKESATKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHE 113
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
PT +WA AAG+ ++ RRRL +G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 114 SRVPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 173
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 174 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 222
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R YLR ++LL+A+EE+ LS IQD+LKLE +R L G PT ++W+ A
Sbjct: 268 SDPIRSYLR-DIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAV 326
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+DQ L R+ G KDK++ SN+RLV+SI KNYQG GM L DL+QEG GL+RGAEK
Sbjct: 327 SLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEK 386
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD G+KFSTYA WWI+QAV ++++DQSR IRLPV
Sbjct: 387 FDPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPV 422
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/175 (52%), Positives = 120/175 (68%), Gaps = 14/175 (8%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
STSRR+ S++ YL+ S S LLT +E++L+ IQDL+ LEG+RE L E
Sbjct: 247 STSRRQTDSMKT--------YLKDIGSVS-LLTGEQEVELAMRIQDLVYLEGVREQLEEE 297
Query: 336 CGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
++ WA AA V +REL+ RL+ G K++MI +N+RLV+SIAK Y M
Sbjct: 298 AKRRKQTSEVSNFDWAIAANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSM 357
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLPV
Sbjct: 358 SFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPV 412
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 136/227 (59%), Gaps = 12/227 (5%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 379
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 136/227 (59%), Gaps = 12/227 (5%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 166 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 213
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + +D +P R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 214 SKRKDKFGRVLDPDEPFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 273
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 274 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 333
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 334 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 380
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQWAAA 348
+D +R S LL A +E++L+ IQDL+ LE +RE L E G T QWA+A
Sbjct: 14 TDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASA 73
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AG++ + L +RL G K++MI +N+RLV+SIAK Y + M+ QDL+QEGC GL+RGAE
Sbjct: 74 AGLNVQALHQRLRDGKSAKNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAE 133
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLPV
Sbjct: 134 KFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPV 170
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 115/170 (67%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ P+ ++ D +R RLL A EE++L+ I DLL+LE +RE ++E
Sbjct: 53 SASRRRDPNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIREKMTEH 112
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
G PT +W+ A ++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 113 MGRFPTDLEWSQAINMEWHAFQRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDL 172
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 173 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 222
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 112/166 (67%), Gaps = 5/166 (3%)
Query: 280 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 339
RK+P + D +R RLL A EE++L+ I DLL+LE +RE +++R
Sbjct: 55 RKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERY 109
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 399
P+ A+WA + E RRRL YG KDKM+ SN+RLV+SIAK Y G++ QDL+QEG
Sbjct: 110 PSDAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 169
Query: 400 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 170 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 215
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 119/176 (67%), Gaps = 3/176 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSG + SRR+ P+ ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 60 KSGKAAKSRRRTPTAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVR 119
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ L ++ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 120 DRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 179
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 180 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 235
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/185 (48%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 265 AAANVMSVKS---GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A+V S KS +T RR+ S ++ D +R RLL A EE++L+ I D
Sbjct: 45 GVADVSSKKSRKLSATPRRRGQSKKKPFTEDSIRVYLQEIGRIRLLRAEEEIELARQIAD 104
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 380
LL LE +R L E G PT +WA A+ + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 105 LLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIGRKAKDKMVQSNLRLVVS 164
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 165 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 224
Query: 441 IRLPV 445
IRLPV
Sbjct: 225 IRLPV 229
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 116/174 (66%), Gaps = 3/174 (1%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
K G T R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 64 KGGKT--RRRAQTKKKQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREK 121
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 391
LS+R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++
Sbjct: 122 LSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLS 181
Query: 392 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 182 FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 235
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 115/171 (67%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE LS+
Sbjct: 62 GVKSRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSQ 121
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
+ P ++WA A V + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 122 QLDRDPKDSEWAEAVQVPLPQFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 181
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 182 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 232
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 119/192 (61%), Gaps = 12/192 (6%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEM 313
KA+ TR A K A RR+ ++ Y+ D +R RLL A EE+
Sbjct: 67 KAKATRGAAKGKA-----------RRRTAQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEI 115
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
+L+ I DLL+LE +R+ + ++ PT A WA A + RRRL G KDKM+ S
Sbjct: 116 ELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQS 175
Query: 374 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 433
N+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++
Sbjct: 176 NLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRA 235
Query: 434 LSDQSRTIRLPV 445
++DQSRTIRLPV
Sbjct: 236 IADQSRTIRLPV 247
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 KLSEQLDRDPKDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 113/172 (65%), Gaps = 1/172 (0%)
Query: 275 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
G R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 63 GVAKSRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARRIADLLELERIREKLV 122
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 393
E P +WA+A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 123 EHNHCEPEDREWASAVDMALPEFRRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 182
Query: 394 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 183 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 116/183 (63%)
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
E A A K +SRR+ S ++ D +R RLL A EE++L+ I DL
Sbjct: 35 EDAIAEPEDRKVRGSSRRRETSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADL 94
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE + E L +R G P +WA A ++ +RRL G KDKM+ SN+RLV+SIA
Sbjct: 95 LELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIA 154
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 155 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 214
Query: 443 LPV 445
LPV
Sbjct: 215 LPV 217
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 119
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 120 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 179
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 180 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 58 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 117
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
LSE+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 118 RLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 177
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 178 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 232
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Query: 271 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
+ K+ ST RR +P + D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 ATKARSTRRRAQPKKKHY-TEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L + P A+WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 HLCDHLHREPYDAEWADAVKMSVGQFRHRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 230
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 117/176 (66%), Gaps = 3/176 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSG + SRR+ P ++ Y+ D +R RLL A+EE++L+ I +LL+LE R
Sbjct: 59 KSGKAAKSRRRTPIAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLELERAR 118
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L ER P ++WAA + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 ERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 273 KSGS--TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
KSGS R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R
Sbjct: 59 KSGSKVAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIR 118
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L E P +WA A G+ R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 119 EQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRG 178
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 114/170 (67%), Gaps = 1/170 (0%)
Query: 277 TSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
T+ R+R + ++ Y+ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 50 TATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRS 109
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 110 LGRYPSDKEWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 169
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 170 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 219
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 62 KSGKAAKSRRRSQNKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 121
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L ++ P +++WA A + + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 122 RLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 181
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 182 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ S ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 60 KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 119
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E+ P + +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 120 RLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 179
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 180 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 234
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 134/227 (59%), Gaps = 12/227 (5%)
Query: 218 QPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGST 277
QP +S D P H + +RS R ER++++ +A N ++ SG
Sbjct: 165 QPHRRSVD--PNHS---------YDQVFIRSTRLLERRSKKRNGGHRALDNGVAC-SGVN 212
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S+RK + + + R ++ LTA EE Q+ + IQ+L+KLEG + L +CG
Sbjct: 213 SKRKDKFGRVLIQTSLFRLFLRDRETTEFLTAKEEKQMFSQIQNLMKLEGAQRNLQAQCG 272
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
PT +WA A G+ REL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ
Sbjct: 273 REPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLVIHVARKYEGCGLDIQDLVQ 332
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 333 DGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 379
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 114/171 (66%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G TSRR+ + ++ D +R RLL A EE++L+ I DLL+LE + + L+E
Sbjct: 45 GKTSRRRTQTKKKHYTEDSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAE 104
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
P A+WA A + + +RRL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 105 TLQRDPQDAEWAEAVDMPLPKFQRRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 164
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 165 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 215
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 111/170 (65%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S +RR+ ++ D +R RLL A EE++L+ I DLL+LE LRE L
Sbjct: 51 SATRRRDAGKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRN 110
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
G P+ +WA G++ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 111 LGRYPSDKEWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 170
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 171 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 220
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSG--STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG + SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 59 KSGKAAKSRRRTQTKKKPFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRD 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E+ P F +WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 DLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Query: 280 RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L ++
Sbjct: 59 RRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRESLQQQLDR 118
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 398
+P A+WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 119 TPQDAEWANAVNMTLPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 178
Query: 399 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 225
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 114/173 (65%), Gaps = 14/173 (8%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG-LREVLSERCGGSPTF 342
S Q+VD YL+ S S LL ANEE+QL+ IQDL+ LE +E++++ G+
Sbjct: 373 SAQQVDSMKV--YLKEIGSVS-LLNANEEVQLARKIQDLMNLETTYKELVAKVAEGNDPI 429
Query: 343 AQ----------WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
AQ WA G+ + EL RL G K+ MI +N+RLV+SIAK Y M+
Sbjct: 430 AQTHGDKVTKSMWARELGLTEFELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSF 489
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QDL+QEGC GL+RGAEKFD +G+KFSTYAHWWI+QAV +S+SDQSRTIRLPV
Sbjct: 490 QDLIQEGCVGLIRGAEKFDFERGYKFSTYAHWWIRQAVTRSISDQSRTIRLPV 542
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 272 VKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
VK+G + R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +R
Sbjct: 54 VKAGKVVKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQMERVR 113
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E L +R P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G
Sbjct: 114 EQLCDRLDRDPHDSEWAEAVELPINSFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRG 173
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 174 LSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 229
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/185 (47%), Positives = 117/185 (63%), Gaps = 10/185 (5%)
Query: 266 AANVMSVKSGSTSRR----KRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A+N + K +T RR K+P + D +R RLL A EE++L+ I D
Sbjct: 55 ASNKKARKLPATRRRTQTKKKPFTE-----DSIRVYLQEIGRIRLLRAEEEIELARQIAD 109
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVIS 380
LL LE +R E G PT +WA A + + R+ RRL+ G KDKM+ SN+RLV+S
Sbjct: 110 LLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIGRRAKDKMVQSNLRLVVS 169
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
IAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRT
Sbjct: 170 IAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRT 229
Query: 441 IRLPV 445
IRLPV
Sbjct: 230 IRLPV 234
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 113/171 (66%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G ++RR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L +
Sbjct: 51 GRSTRRRSQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREQLYD 110
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
+ P +WA + + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QD
Sbjct: 111 KLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQD 170
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 171 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 221
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 114/171 (66%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G ++RR+ S ++ D +R RLL A+EE++L+ I DLL+LE +RE LSE
Sbjct: 46 GRSNRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSE 105
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
+ P +WA ++ R RL+ G K+KM+ SN+RLV+SIAK Y G++ QD
Sbjct: 106 QLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQD 165
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 166 LIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 216
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 117/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I +LL++E +RE
Sbjct: 59 KSGKAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLEMERVRE 118
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E+ P ++WA A + R RL+ G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 119 RLLEQLDREPQDSEWAEAVQLSLPTFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 121/183 (66%), Gaps = 2/183 (1%)
Query: 265 AAANVMSVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
A ++ +KSG ++ R R + ++ Y+ D +R RLL A+EE++L+ I DL
Sbjct: 47 AQSDEDDLKSGKVAKSRTRTAGKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADL 106
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE +RE L P ++WA A ++ + +RRL G K+KM+ SN+RLV+SIA
Sbjct: 107 LELERIREELIYHLDREPQVSEWANAVDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIA 166
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 167 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 226
Query: 443 LPV 445
LPV
Sbjct: 227 LPV 229
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVDMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 231
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/169 (47%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ LS++
Sbjct: 48 STRRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLSDQL 107
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
P ++WA + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 108 EREPQDSEWATEVNMPLQAFRHRLYVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 167
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 168 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 216
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
KSG ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 57 KSGKGAKARRRAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 116
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E P ++WA A + R RL+ G K+KM+ SN+RLV+SIAK Y G+
Sbjct: 117 QLLEEYNREPKDSEWANAVEMALPAFRHRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGL 176
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 177 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 231
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 112/169 (66%)
Query: 277 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
+ RRK + ++ D +R RLL A+EE++L+ I DLL+LE +R L+E+
Sbjct: 56 SGRRKAQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRADLAEQL 115
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
PT A+WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 116 EREPTDAEWAQKVDMALPAFRHRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 175
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 176 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 224
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 110/168 (65%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
SRR+ + ++ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 56 SRRRVQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLD 115
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
P +WAA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+Q
Sbjct: 116 REPHDREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQ 175
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 176 EGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 223
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 103/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL+LE R L G PT +WA +
Sbjct: 83 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELERKRTELEATIGCEPTDEEWAEEVDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 123/199 (61%), Gaps = 1/199 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + + +K+ Q VD D L+ + +
Sbjct: 187 VRSKRQLERRAKNRRAPKSNDVDNEGYVPQKINAKKKFK-QGVDTDDALQLFLWGPETKQ 245
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ +L+ ++ G
Sbjct: 246 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRGRS 305
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 306 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 365
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+Q++RKS+ SRTIRLP
Sbjct: 366 IRQSIRKSIFQNSRTIRLP 384
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 120/177 (67%), Gaps = 2/177 (1%)
Query: 271 SVKSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL 328
+VK+G ++ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +
Sbjct: 56 AVKAGKAAKGRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERV 115
Query: 329 REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
+ L ++ P ++WA A + ++ R RL+ G KDKM+ SN+RLV+SIAK Y
Sbjct: 116 GDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 175
Query: 389 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 176 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 232
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 112/173 (64%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
K ST RR+ + ++ D +R RLL A EE++L+ I DLL+LE RE L
Sbjct: 47 KKLSTIRRQETNKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELEQKREKL 106
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+ P +WAA+ ++ RRRL G K+KM+ SN+RLV+SIAK Y G++
Sbjct: 107 WQELKRIPNDREWAASVEMELPAFRRRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSF 166
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 167 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 219
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 110/169 (65%)
Query: 277 TSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
T+RR+ S ++ D +R RLL A+EE++L+ I DLL+LE + + L +R
Sbjct: 46 TARRRGQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIYDDLFDRL 105
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
P +WA + R RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 106 EREPQLQEWALEVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 165
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 166 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 214
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 246
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 247 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 306
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 307 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 366
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+Q++RKS+ SRTIRLP
Sbjct: 367 IRQSIRKSIFQNSRTIRLP 385
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 1/204 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRSRR R++ RA + + S S +KR S Q D +DPLR + +
Sbjct: 176 VRSRRHLARQSLNRRAPKTKDLIFETYDSKSADIQKRLS-QGFDPNDPLRLFLWGPETKQ 234
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L A IQDL+ LEG++ L + G PT +WA A G+ L+ +L+ G
Sbjct: 235 LLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNR 294
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++K+I +N+R+V+ IAK YQ G+ LQDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 295 SREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWW 354
Query: 426 IKQAVRKSLSDQSRTIRLPVISHG 449
I+Q + K++ SRTIRLP +G
Sbjct: 355 IRQTITKAIFQHSRTIRLPENVYG 378
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 6/223 (2%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 281
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 194 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 248
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
+ + ++ +P + ++ LTA EE L + IQ L+K+E L +CG PT
Sbjct: 249 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQILMKIEEAHRKLEVQCGREPT 308
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+GC
Sbjct: 309 LAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCS 368
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 369 GLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 411
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSR 305
VRS+RQ ER+A+ RA + + TS +K+ Q D D L+ + +
Sbjct: 128 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 186
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L + IQ LLKLE ++ L + G PT +WA A G+ L+ ++ G
Sbjct: 187 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 246
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA+WW
Sbjct: 247 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 306
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+Q++RKS+ SRTIRLP
Sbjct: 307 IRQSIRKSIFQNSRTIRLP 325
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 112/169 (66%), Gaps = 1/169 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+ L ++
Sbjct: 55 STRRRTQAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDRLYDQL 114
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
P +WA ++ R+RL G K+KM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 115 EREPKEGEWAKEVEMELPAFRQRLFLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLI 174
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 175 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 223
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/169 (47%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 278 SRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERC 336
S R+R ++ Y+ D +R RLL A+EE++L+ I +LL+LE + E L +
Sbjct: 58 STRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQL 117
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
P ++WA A + + R RL G KDKM+ SN+RLV+SIAK Y G++ QDL+
Sbjct: 118 DREPKDSEWALAVEMPLPQFRHRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 177
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 178 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 226
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 7/202 (3%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS+RQ ER+A+ RA + +N M G ++ K+ Q D D L+
Sbjct: 188 VRSKRQLERRAKNRRAPK---SNNMD-SEGYVPQKINAKKKMKQGFDTDDALQLFLWGPE 243
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L A IQ L+KLE ++ L + G PT +WA A G+ L+ ++
Sbjct: 244 TKQLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHR 303
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G ++K+IT+N+RLV+ IAK YQ G+N QDL+QEG GL++ EKF G +F+TYA
Sbjct: 304 GRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYA 363
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WWI+Q++RKS+ SRTIRLP
Sbjct: 364 YWWIRQSIRKSIFQNSRTIRLP 385
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 101/154 (65%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L E + G P +WAA +
Sbjct: 134 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEM 193
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 194 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 253
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 254 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 287
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 130/204 (63%), Gaps = 5/204 (2%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE-----VDYSDPLRYLRAT 300
VRS R ER+A+ + + + + G + ++ VQ+ ++ SDPL +
Sbjct: 202 VRSTRLRERRAKERKVPKLKVKDKETYLDGKDAAEEKLQVQKKISKGMNQSDPLNKFLQS 261
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
S +LLT+ +E QL IQ+LL+LE L+ L + G PT A+WA AG++ R+++ +L
Sbjct: 262 PESKQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQL 321
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G ++K+I +N+RLV IAK+YQG G++++DL+QEG GL++ +KF G +F++
Sbjct: 322 RCGNRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFAS 381
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLP 444
YA+WWIKQA+RK++ + SRTIRLP
Sbjct: 382 YAYWWIKQAIRKAIYNHSRTIRLP 405
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 110/183 (60%), Gaps = 9/183 (4%)
Query: 263 EKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL 322
EKAA + S+K G V D +R RLL +EE++L+ I DL
Sbjct: 173 EKAAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADL 223
Query: 323 LKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
L+LE L G P +WAA + + RRRL G K+KM+ SN+RLV+SIA
Sbjct: 224 LQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIA 283
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
K Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIR
Sbjct: 284 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 343
Query: 443 LPV 445
LPV
Sbjct: 344 LPV 346
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 128/209 (61%), Gaps = 6/209 (2%)
Query: 239 QVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR--PSVQE-VDYSDPLR 295
++ +SI ++ RR +RK ++ + + K + RR R ++E +D + LR
Sbjct: 190 KIVRSIRLKERRSKQRKVSNSKVLDD---EMYLTKKSNVQRRLRLEKKLKEGLDGNHALR 246
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
+ + +LL+ EE QL A IQDL KL+ + L G PT A+WA G+ R+
Sbjct: 247 LFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRD 306
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L++RL+ G KDK+I +N+RLV+ IAK YQG G++LQDL+QEG GL+R EKF G
Sbjct: 307 LQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAG 366
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+FSTYA+WWI+Q +R++L S+TIRLP
Sbjct: 367 CRFSTYAYWWIRQTIRRALFLHSKTIRLP 395
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 101/154 (65%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L E + G P +WA+ +
Sbjct: 151 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEM 210
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 211 PNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 270
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 271 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 304
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 56 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 115
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 116 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 175
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 176 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 230
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 116/175 (66%), Gaps = 2/175 (1%)
Query: 273 KSGSTSR-RKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
K+GS + R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE
Sbjct: 41 KAGSAGKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRE 100
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGM 390
L E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G+
Sbjct: 101 KLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 160
Query: 391 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 161 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 215
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 111/187 (59%), Gaps = 9/187 (4%)
Query: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
T A + AA + S+K G V D +R RLL +EE++L+
Sbjct: 67 TVAKDGKAAKLPSIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARK 117
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
I DLL LE L + E G P +WA + + RRRL G K+KM+ SN+RLV
Sbjct: 118 IADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFRRRLMLGRRAKEKMVQSNLRLV 177
Query: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQS
Sbjct: 178 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 237
Query: 439 RTIRLPV 445
RTIRLPV
Sbjct: 238 RTIRLPV 244
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 113/172 (65%), Gaps = 1/172 (0%)
Query: 275 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
G+ R+R ++ Y+ D +R RLL A+EE++L+ I DLL+LE +RE L
Sbjct: 59 GAAKSRRRAQTKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLI 118
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 393
E P +WA A + E RRRL G KDKM+ SN+RLV+SIAK Y G++ Q
Sbjct: 119 EHYHREPNEKEWANAVDMRLPEFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 178
Query: 394 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 230
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 115/179 (64%), Gaps = 6/179 (3%)
Query: 273 KSGSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
K+G R+R + ++ Y+ D +R RLL A+EE++L+ I DLL+LE +R+
Sbjct: 47 KAGKAKGRRRATAKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIRDR 106
Query: 332 LSERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQ 386
+SE+ P + WA+ + R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 107 ISEQLDCDPDDLERHPEPWASEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYM 166
Query: 387 GAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 167 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 225
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 122/196 (62%)
Query: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
RR +RK +++ + + R ++ +E+D DPLR + +LLT
Sbjct: 214 RRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLT 273
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E QL + IQDLL+LE ++ L + G PT A+WA AG++ R L+ +L+ G ++
Sbjct: 274 LEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSRE 333
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 334 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQ 393
Query: 429 AVRKSLSDQSRTIRLP 444
A+RK++ SRTIRLP
Sbjct: 394 AIRKAVFRHSRTIRLP 409
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 136/214 (63%), Gaps = 12/214 (5%)
Query: 243 SIAVRSRRQT-ERKARRTR----AAEKAAANVMSVKSGSTSRRKR----PSVQEVDYSDP 293
S A R++R+T +R + +T+ AE +A + S + SRR R + +D
Sbjct: 212 STAPRAKRKTVKRVSTKTQLTGIVAEPGSAQEANEASAAESRRNRRIARKNADTKKQTDS 271
Query: 294 LR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGV 351
++ YL+ + S LLT EE++L+ IQDL+ L + E L E GG PT WA +
Sbjct: 272 MKTYLKDIGTVS-LLTGAEEVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNI 330
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++EL RRL G K+ MI +N+RLV+SIAK Y M+ QDL+QEGC GL+RGAEKFD
Sbjct: 331 TEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFD 390
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+G+KFSTYAHWWI+QAV +S+SDQSRTIRLPV
Sbjct: 391 FKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPV 424
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/197 (40%), Positives = 123/197 (62%)
Query: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
RR +RK +++ + + R ++ +E D DPLR + +LLT
Sbjct: 83 RRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEEHDQDDPLRLFLWGPETKQLLT 142
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E QL + IQDLL+LE ++ L + G PT A+WA AG++ R L+ +L+ GI ++
Sbjct: 143 LEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGIRSRE 202
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 203 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQ 262
Query: 429 AVRKSLSDQSRTIRLPV 445
A+RK++ SRTIRLP+
Sbjct: 263 AIRKAVFRHSRTIRLPI 279
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 106/154 (68%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 242
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 106/154 (68%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 89 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 148
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 149 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 208
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 209 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 242
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 106/154 (68%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DLL LE +R+ L E+ P+ A+WAAA
Sbjct: 74 DSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDS 133
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
E RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 134 PLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 193
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 194 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 227
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLT EE+ + +Q + LE L+E L+E G PT AQWA AA
Sbjct: 9 DPVRAYLREIGRVP-LLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAK 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ Q+ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 MTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P +WAA +
Sbjct: 154 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDM 213
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 214 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 273
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 274 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 307
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 106/155 (68%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLT EE+ S +Q ++ LE L+ L+E PT +WA AA
Sbjct: 8 SDPVRSYLKEIGRVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAK 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ Q+EL++R++ G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ITQKELKKRMSIGAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 134/230 (58%), Gaps = 14/230 (6%)
Query: 226 LEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTS------- 278
L+ H KLL + + +RS+R ER++++ A ++ + + ST
Sbjct: 174 LDLNHSYEKLLSKG---QVFIRSKRLLERRSKKRDAPRASSTDALCGVVSSTDALCGVVD 230
Query: 279 ----RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
+ + + +D +P + ++ LTA EE QL + +Q+L+KLE + L
Sbjct: 231 TKKKEKSKKYGRVLDPDEPFKLFLRDPETTEFLTAKEEKQLFSEVQNLMKLEEAQRRLEA 290
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
+CG P +WA A G+ ++L+ ++ G C++KM SN RLVI +A+ YQG G++++D
Sbjct: 291 QCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCREKMARSNFRLVIHVARKYQGYGLDIED 350
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
LVQ+GC GL++ EKF+ SKG +F TYA+WWI+QA++KS+ SR IRLP
Sbjct: 351 LVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQAIKKSIFKHSRLIRLP 400
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 103/158 (65%), Gaps = 4/158 (2%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG-GSP---TFAQWAA 347
D +R RLL A+EE++L+ I DLL+LE RE L+ G P + + WA
Sbjct: 98 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAV 157
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+ RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R A
Sbjct: 158 KVDMPLPRFRRRLYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 217
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 218 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 255
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLTRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 261
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L R G P +WAA +
Sbjct: 150 DSIRVYLQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEM 209
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 210 SLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 269
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 270 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 303
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE G P+ +WA A +
Sbjct: 108 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADM 167
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 168 PLARFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 227
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 228 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 261
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 133 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 192
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 193 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 252
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 253 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 286
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 9/202 (4%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 204 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 257
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 258 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 317
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 318 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 377
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WWI+QAVRK++ SRTIRLP
Sbjct: 378 YWWIRQAVRKAIFQHSRTIRLP 399
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 137 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 196
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 197 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 256
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 257 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 290
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 282
S LEPT LEE + VRS R+ ER+++ R + S +K+
Sbjct: 170 STGLEPTDLSNFSLEEVKT----VRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQKK 225
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
+ + D DPLR + +LLTA EE +L +QDL+ LE ++E + G PT
Sbjct: 226 IN-EGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+WA A G+ ++ +L+ G ++K+I +N+R+V+ IAK YQG G++LQDL+QEG G
Sbjct: 285 VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMG 344
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
L++ EKF G +F+TYA+WWI+Q VRK++ SRTIRLP
Sbjct: 345 LMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLP 386
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 123/202 (60%), Gaps = 9/202 (4%)
Query: 246 VRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRR---KRPSVQEVDYSDPLRYLRATTS 302
VRS R ER++++ R + A V SRR +R + D DPLR
Sbjct: 215 VRSTRLLERRSKKRRNPKVA------VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPE 268
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLTA EE +L IQ+L++LE +++ L PT +WA A G+ + L+ +L+
Sbjct: 269 TRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHS 328
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G + K+I +N+R+V+ IAK YQG G+NLQDL+QEG GL+ EKF + G +F++YA
Sbjct: 329 GNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYA 388
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WWI+QAVRK++ SRTIRLP
Sbjct: 389 YWWIRQAVRKAIFQHSRTIRLP 410
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 161 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEM 220
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 221 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 280
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 281 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 314
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 5/201 (2%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
+A ++RA + +N K SR+ + SV+E + D + Y T + LL NEE+
Sbjct: 114 RAIKSRATKPGNSNGEPPKP--VSRKIKASVRETGF-DSMHYYMKTMGNHELLQKNEEII 170
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR--ELRRRLNYGILCKDKMIT 372
L+ IQ L+ EG R+ L PT+ +WAA+ + +L+R++ + K +
Sbjct: 171 LAREIQILIGWEGKRDELEAELVRPPTYQEWAASIDPEMTVIQLKRQIRRSLRAKAALTE 230
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLVISIAK YQ G+N+QDL QEG GL R EKFD KGF+FSTYA WWIKQ + +
Sbjct: 231 SNLRLVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMR 290
Query: 433 SLSDQSRTIRLPVISHGRGNL 453
+++DQ+RTIRLPV H + NL
Sbjct: 291 AIADQARTIRLPVHIHDQLNL 311
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 294
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 105/154 (68%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A EE++L+ I DLL+LE +R+ LS+ P A WAAA +
Sbjct: 66 DSIRLYLQEIGRIRLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDM 125
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 126 PLPAFRRRLHLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 185
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 186 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 219
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYL+ LLT +E+ L +Q L+KLE +R+ L+E PT A+WA A +
Sbjct: 13 RYLKGIGRFP-LLTHEQEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPE 71
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
L++ + G KDKM+ SN+RLV+SIAK Y+G+ +++ DL+QEG GL RG EKFD K
Sbjct: 72 ALKKTVEIGQQAKDKMMRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLK 131
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G++FSTYA+WWI+QA+ ++++D RTIRLP+
Sbjct: 132 GYRFSTYAYWWIRQAITRAIADTGRTIRLPI 162
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 141 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEM 200
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 201 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 260
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 261 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 294
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/184 (44%), Positives = 108/184 (58%), Gaps = 9/184 (4%)
Query: 262 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 321
A K A + S+K G V D +R RLL +EE++L+ I D
Sbjct: 139 AAKTAKALASIKIGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKIAD 189
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 381
LL+LE L G P +WA + + RRRL G K+KM+ SN+RLV+SI
Sbjct: 190 LLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFRRRLMLGRRAKEKMVQSNLRLVVSI 249
Query: 382 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 441
AK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTI
Sbjct: 250 AKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTI 309
Query: 442 RLPV 445
RLPV
Sbjct: 310 RLPV 313
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 140 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEM 199
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 200 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 259
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 260 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 293
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 148 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 207
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 208 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 267
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 268 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 301
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE + G P+ +WAA +
Sbjct: 115 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEM 174
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 175 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 234
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 235 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 268
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 130 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEM 189
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 190 PVIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 249
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 250 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 283
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 125 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEM 184
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 185 PLIRFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 244
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 245 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 278
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 120/196 (61%)
Query: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
RR +RK +++ + + R ++ +E+D +DPL + + +LLT
Sbjct: 217 RRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNEELDQNDPLCFFLRGPETKQLLT 276
Query: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
+E QL + IQDLL+LE ++ L + G PT A+WA G++ R L +L G ++
Sbjct: 277 LEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSGSRSRE 336
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
K+I +N+R+V+ +AK+YQG G++LQDL+QEG GL++ EKF+ G +F YA WWI+Q
Sbjct: 337 KLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAFWWIRQ 396
Query: 429 AVRKSLSDQSRTIRLP 444
A+RK++ SRTIRLP
Sbjct: 397 AIRKAVFRHSRTIRLP 412
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 106/155 (68%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ QR+L+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRQLKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG++FSTYA+WWI+QA+ +++++QSRTIRLP+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEQSRTIRLPI 162
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 106/155 (68%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+R LLT EE+ S +Q ++ LE L+ L+E+ P+ +WA AA
Sbjct: 8 ADPVRTYLKEIGRVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAAN 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ QREL+++L G K KM+ +N+RLV+S+AK Y M+L DL+QEG G+ RG EKF
Sbjct: 68 LSQRELKKQLLLGKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKF 127
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 109/163 (66%), Gaps = 3/163 (1%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
++Q+ D D +R+ RLL +EE+QL+ I LL E ++ L ++ PT +
Sbjct: 107 NIQKAD--DSVRWYLQLIGRVRLLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNS 164
Query: 344 QWAAAAGV-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+W AA V D R+ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG G
Sbjct: 165 EWTAACKVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLG 224
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R AEKFD+ KGFKFSTYA WW+KQAV ++++D SRTIRLPV
Sbjct: 225 LIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPV 267
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
D +R+ +LL EE+QL+ I LL+ E ++ L E+ G PT +W+AA
Sbjct: 83 DDSVRWYLQLIGKVKLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACK 142
Query: 351 V-DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ D ++ + L K++MI +N+RLV+SIAK Y GM+LQDLVQEG GL+R EK
Sbjct: 143 ISDVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEK 202
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD+ KGFKFSTYA WWIKQ+V ++++D SRTIRLPV
Sbjct: 203 FDSEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPV 238
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 7/177 (3%)
Query: 275 GSTSRRKRPSVQEVDYS-DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
G SRR R V++ Y+ D +R RLL A+EE++L+ I DLL++E +R+ L
Sbjct: 86 GRASRR-RTQVKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLEMERVRDRLC 144
Query: 334 ERCGGSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGA 388
+ G + + WA G+ R RL G K+KM+ SN+RLV+SIAK Y
Sbjct: 145 QELGCTAEELERNPEPWAKELGMTVPAFRHRLFVGRKAKEKMVQSNLRLVVSIAKKYMNR 204
Query: 389 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 205 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 261
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 113/214 (52%), Gaps = 44/214 (20%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 336 CGGSPTFAQWA----AAAGVDQR------------------------------------- 354
P QW ++QR
Sbjct: 104 LDQEPNDDQWGHRIFQWENIEQRLCSQKNKEPKWSDIVAELNKAEIISDLEKTWKQQSKA 163
Query: 355 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 164 YLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 223
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 224 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 257
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/216 (40%), Positives = 114/216 (52%), Gaps = 46/216 (21%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ PS ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 44 SASRRRDPSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 103
Query: 336 CGGSPTFAQWA----------------AAAGVDQR------------------------- 354
PT QW +A D +
Sbjct: 104 LDQEPTDEQWGKRIFQWENIEQMLRAQSAKDKDPKWSEVTTMLQQADIISDLEKTWKLES 163
Query: 355 -----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEK
Sbjct: 164 KAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 223
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 224 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 259
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLPV
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPV 284
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 103/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LLT EE+ + +Q L+ LE LRE + E G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+RE R + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SKREFRSIVESGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 108/186 (58%), Gaps = 9/186 (4%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
R K A + S+K G V D +R RLL +EE++L+ I
Sbjct: 99 RKDAKGAKALASIKVGPKG---------VYTEDSIRVYLQEIGRIRLLRPDEEIELARKI 149
Query: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
DLL+LE G P +WAA + + RRRL G K+KM+ SN+RLV+
Sbjct: 150 ADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFRRRLMLGRRAKEKMVLSNLRLVV 209
Query: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSR
Sbjct: 210 SIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSR 269
Query: 440 TIRLPV 445
TIRLPV
Sbjct: 270 TIRLPV 275
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+ +DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NLTDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSE 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 130 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 189
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 190 SDVKKFRSILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 249
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLPV
Sbjct: 250 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPV 284
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 105/187 (56%), Gaps = 37/187 (19%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT---------- 341
D +R RLL A+EE++L+ I DLL LE LR R G + T
Sbjct: 61 DSIRVYLQEIGRIRLLRADEEIELARQIADLLTLERLRA----RMGAAGTDMHSDVADLL 116
Query: 342 -----------------------FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
+WA AAG+ + R R+ YG KDKM+ SN+RLV
Sbjct: 117 GDDDLLTENLLASGDQVTESEQELRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLV 176
Query: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQS
Sbjct: 177 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 236
Query: 439 RTIRLPV 445
RTIRLPV
Sbjct: 237 RTIRLPV 243
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ RLL EE+QL+ I LL E ++ L E+ PT ++W AA V
Sbjct: 133 DSVRWYLQLIGRVRLLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAACKV 192
Query: 352 -DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
D ++ R L+ K++M+ +N+RLV+SIAK Y GM+LQDL+QEG GL+R AEKF
Sbjct: 193 SDVKKFRAILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKF 252
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D+ KGFKFSTYA WW+KQAV ++++D SRTIRLPV
Sbjct: 253 DSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPV 287
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+
Sbjct: 6 NHTDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSE 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
AA + + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAEISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGV 124
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 22/239 (9%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRK 281
S D ++EEL Q + VRS R ER+++R A + A+V S + +
Sbjct: 103 SVDSSKSNEEL-----QSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKS 157
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD----------------LLKL 325
+ + ++ +P + ++ LTA EE L + IQ L+K+
Sbjct: 158 KKYGRVLEPDEPFKLFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKI 217
Query: 326 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
E L +CG PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y
Sbjct: 218 EEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKY 277
Query: 386 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 278 EGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 336
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 116/227 (51%), Gaps = 46/227 (20%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
A A+ + + SRR+ P ++ D +R RLL A EE++L+ I DLL+
Sbjct: 33 AEADGKKTRKITASRRRDPGKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQ 92
Query: 325 LEGLREVLSERCGGSPTFAQWAA-------------AAGVDQRE---------------- 355
LE +RE L E PT QW A ++E
Sbjct: 93 LERIREALWEELDQEPTDEQWGKRIFQWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEII 152
Query: 356 -----------------LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 398
+RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QE
Sbjct: 153 SDLEKTWKLESKAYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQE 212
Query: 399 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 213 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 259
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRSYLREIGRVP-LLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 17/225 (7%)
Query: 237 EEQVSQSIAVRSRRQTERKARRTRAAEKAAANV-MSVKSGSTSRRKRPSVQEVDYSDPLR 295
E Q + VRS R ER+++R A + A+V S + + + + ++ +P +
Sbjct: 152 ELQSKGQVFVRSTRLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFK 211
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQD----------------LLKLEGLREVLSERCGGS 339
++ LTA EE L + IQ L+K+E L +CG
Sbjct: 212 LFLRDRETTEFLTAKEERHLFSKIQAKPYFYPVIFIFRTAQILMKIEEAHRKLEVQCGRE 271
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 399
PT A+WA A G+ +EL+ + G C++KM SN RLVI +A+ Y+G G+++QDLVQ+G
Sbjct: 272 PTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDG 331
Query: 400 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
C GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ SR IRLP
Sbjct: 332 CSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNSRLIRLP 376
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 151 bits (381), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/189 (42%), Positives = 120/189 (63%), Gaps = 7/189 (3%)
Query: 259 TRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSA 317
TR A +A + + + R P V D +R YLR LLT +E+ L
Sbjct: 7 TRPAALQSAPALDSRQAPIAVRTLPPVD----GDLVRSYLRDIGRVP-LLTHEQEITLGR 61
Query: 318 GIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
+Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G K++M+ +N+R
Sbjct: 62 QVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGRRAKERMVAANLR 121
Query: 377 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 436
LV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + +++++
Sbjct: 122 LVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAE 181
Query: 437 QSRTIRLPV 445
+SRTIRLP+
Sbjct: 182 KSRTIRLPI 190
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 103/155 (66%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD +R S LLT +E+QL +Q +++LE +++ L++ CG P+ W AA
Sbjct: 21 SDNVRLYLRDIGRSPLLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAAD 80
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
++ EL+ L G K KMIT+N+RLV++IAK Y+ + L DL+QEG GL R AEK+
Sbjct: 81 LEIAELQTLLEKGHKAKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKY 140
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +GF+FSTYA+WWI+Q + +++++Q RTIRLP+
Sbjct: 141 DPQRGFRFSTYAYWWIRQGITRAIAEQGRTIRLPI 175
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE LRE L R GG+ P+ + AAAAG+ LR+RL+ G
Sbjct: 60 LLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLHAGR 119
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 120 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 179
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 180 WIRQGITRAIAEKSRTIRLPI 200
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 105/160 (65%), Gaps = 4/160 (2%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
D +R YLR +LL EE++LS + L+ LE + E G SPT ++WA G
Sbjct: 276 DTIRSYLREI-GRYQLLHPGEEIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCG 334
Query: 351 V--DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
D +LR + G K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG E
Sbjct: 335 YGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVE 394
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
KFDA +GF+FSTYA WWI+Q++ +++SD SR+IRLPV H
Sbjct: 395 KFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVH 434
>gi|223998999|ref|XP_002289172.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220974380|gb|EED92709.1| RNA polymerase [Thalassiosira pseudonana CCMP1335]
Length = 318
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 104/159 (65%), Gaps = 2/159 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA-- 349
D ++Y T + LL NEE+ L+ IQ L+K E +RE L + PT+ +WA A
Sbjct: 1 DSMKYYMKTMGNHDLLQKNEEIILAREIQILIKWEEVREELEGQLLRPPTYQEWANAIEP 60
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
G+ ++++++ + K + SN+RLVISIAK YQG G+N+QDL QEG GL R EK
Sbjct: 61 GMTVTQIKKQIRRSLRAKAALTESNLRLVISIAKRYQGRGLNMQDLCQEGTLGLTRACEK 120
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
FD +GF+FSTYA WWIKQ + ++++DQ+RTIRLPV H
Sbjct: 121 FDPERGFRFSTYATWWIKQGIMRAIADQARTIRLPVHIH 159
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 3/157 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER--CG-GSPTFAQWAAA 348
D +R RLL A+EE++L+ I DLL+LE + L+E+ C WA
Sbjct: 80 DSIRLYLQEIGRIRLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVE 139
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+ + + RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Sbjct: 140 MDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 199
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 200 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LL+ EE+ + +Q L+ LE ++E L + G P+ QW+ AA
Sbjct: 8 TDPVRAYLREIGRVP-LLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +LRR L G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 EISEEQLRRELGAGDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 129/230 (56%), Gaps = 31/230 (13%)
Query: 217 QQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGS 276
++P N DLE + ++ S+ IA K A+ + S +
Sbjct: 24 EEPQNLKGDLESSKKD-------SSEKIA------------------KLASKLASTPRRT 58
Query: 277 TSR-RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
R RK+P + D +R RLL A EE++L+ I DLL+LE +RE + +
Sbjct: 59 AERGRKKPYTE-----DSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERIEDE 113
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
+ A+W ++ R RRRL G KDKM+ SN+RLV+SIAK Y G++ QDL
Sbjct: 114 LDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDL 173
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 174 IQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 223
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++ QSRTIRLP+
Sbjct: 144 WIRQAITRAIAQQSRTIRLPI 164
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 101/154 (65%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL A+EE++L+ I DL +LE R L G PT +WA G
Sbjct: 77 DSIRLYLQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQ 136
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 137 ALPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 196
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 197 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 230
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L++LE + L R GG P+ A+WA+AAG+ L+R+L+ G
Sbjct: 34 LLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLSSGR 93
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPI 174
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 95/141 (67%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R + G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDREIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYAYW 143
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++ QSRTIRLP+
Sbjct: 144 WIRQAITRAIAQQSRTIRLPI 164
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ +Q L+KL L+E L G + QWA AA V EL+R++ G
Sbjct: 63 LLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELKRQVLAGSR 122
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG++FSTYA+WW
Sbjct: 123 AKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 182
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ QSRTIRLPV
Sbjct: 183 IRQGITRAIATQSRTIRLPV 202
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 96/141 (68%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
RLLTA EE+ +Q L+ L + L +R G P+ +WAAA ++ +L R++ G
Sbjct: 24 RLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQGQ 83
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD SKG+KFSTYA+W
Sbjct: 84 RAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFDPSKGYKFSTYAYW 143
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++ QSRTIRLP+
Sbjct: 144 WIRQAITRAIAQQSRTIRLPI 164
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT AQWA A G D QR+ RL G
Sbjct: 76 LLEAQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 136 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 195
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLT EE+ + +Q + LE RE+ ++ G PT QWA AA
Sbjct: 9 DPVRSYLREIGRVP-LLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAAR 67
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ +REL + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKF
Sbjct: 68 ISRRELHSAIASGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKF 127
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 128 DPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R +LL EE++LS + L+ LE ++ E+ G SPT +WA G
Sbjct: 406 DTIRSYLYEIGRYQLLQPGEEVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGY 465
Query: 352 --DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
D LR+ + G K++M+T+N+RLV+SIAK Y G+ LQDL+QEG GL+RG EK
Sbjct: 466 GEDVEALRKHIRDGRSAKERMVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEK 525
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
FDA +GF+FSTYA WWI+Q++ +++SD SR+IRLPV H
Sbjct: 526 FDAGRGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVH 564
>gi|428217032|ref|YP_007101497.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427988814|gb|AFY69069.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 346
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ +Q L++L L E L+E+ PT A+WA AG++ EL + + G
Sbjct: 51 LLTSEEEIIFGKRVQQLMRLSELYEDLAEQLDRQPTQAEWADKAGLNIEELEQIVRDGTR 110
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WW
Sbjct: 111 SKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 170
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLPV
Sbjct: 171 IRQAITRAIAQQARTIRLPV 190
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 102/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LLT EE+ + +Q L+ LE LR+ + E G PT QWA A +
Sbjct: 9 DPVRAYLKEIGRVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKI 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++EL+ + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKELQSIIEIGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 113/216 (52%), Gaps = 46/216 (21%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
S SRR+ S ++ D +R RLL A EE++L+ I DLL+LE +RE L E
Sbjct: 48 SASRRRDTSKKKPYTEDSIRVYLQEIGRIRLLRAEEEIELARKIADLLQLERIREALWEE 107
Query: 336 CGGSPTFAQWAAAA------------------------------------------GVDQ 353
P QWA ++Q
Sbjct: 108 LDQVPNDEQWAKRIFQWENIEQIIRTQSSKEKEPKWSEVTSLLQEKKTISNLEKIWELEQ 167
Query: 354 R----ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + +RRL G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEK
Sbjct: 168 KSYLPKFKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEK 227
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 228 FDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 263
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 98/154 (63%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G PT +WAA +
Sbjct: 128 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNM 187
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RRRL K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 188 PMARFRRRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 247
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 248 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 281
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
+ LLTA EE L ++ ++K E + E LS G SP+ A+WAAA R R +
Sbjct: 2 TELLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWAAACS--PRLFREMMLTA 59
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
K +M+ N+RLV+SIA+ Y G G+N+QDLVQEG GL R AEKFD KGFKFSTYA
Sbjct: 60 KEAKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYAS 119
Query: 424 WWIKQAVRKSLSDQSRTIRLPVISHGRGN 452
WWI+QAV +S++ SRTIRLPV H N
Sbjct: 120 WWIQQAVFRSIAYHSRTIRLPVHVHNLLN 148
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 108/156 (69%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P ++WA+AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + EL R + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KITEEELHRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP+R YLR LLT EE+ L+ +Q + L+ +++ L++ P +WA AA
Sbjct: 8 TDPVRAYLREIGRVP-LLTHEEEIVLAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ + ELRR + G K+KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 KISEEELRRTMAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAA 348
SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +WAAA
Sbjct: 9 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAA 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+ RG E
Sbjct: 68 AGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVE 127
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP+
Sbjct: 128 KFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 164
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 100/140 (71%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +QDL+ +E ++ L R G P+ + A A+G+ +L+R+L +G
Sbjct: 37 LLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 101/140 (72%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +QDL+KL+ +R+ L+E+ P A+W+ AA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEA 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L + G P+ Q A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQHGRR 99
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 146 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 205
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 206 PVIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 265
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 266 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 299
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 3/157 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQWAAA 348
SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +WAAA
Sbjct: 9 SDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAA 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+ RG E
Sbjct: 68 AGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVE 127
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP+
Sbjct: 128 KFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 164
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/161 (47%), Positives = 109/161 (67%), Gaps = 3/161 (1%)
Query: 287 EVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL-SERCGGSPTFAQ 344
E SD +R YLR LLT EE+ L +Q +KL+ LR+ L SE P+ +
Sbjct: 11 ETPTSDLVRTYLREIGRVP-LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLE 69
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WAAAAG+ ELR++ + G K KMI +N+RLV+S+AK Y M+L DL+QEG G+
Sbjct: 70 WAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQ 129
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
RG EKFD +KG++FSTYA+WWI+QA+ +++++++RTIRLP+
Sbjct: 130 RGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 170
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 34 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 93
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 94 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 153
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 154 WIRQGITRAIAEKSRTIRLPI 174
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ SRTIRLP+
Sbjct: 157 IRQAITRAIAQNSRTIRLPI 176
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L G P +WAA +
Sbjct: 169 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEM 228
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 229 PLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 288
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 289 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 322
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQWAAAAGVDQRELRRRLNYGI 364
LLT +E+ L +Q+L+ LE + + L+ R GG+ P+ A+ A AAG+ L++RL G
Sbjct: 18 LLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQAGR 77
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 78 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 137
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 138 WIRQGITRAIAEKSRTIRLPI 158
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 99/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL LE L + G P +WA +
Sbjct: 159 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDM 218
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 219 PPVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 278
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 279 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 312
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 69 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 128
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 129 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 188
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 189 WIRQAITRTIANDARTIRLPI 209
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E SP+ A+WA A G + Q++ RL+ G
Sbjct: 75 LLNAEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGR 134
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 135 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 195 WIRQAITRTIANDARTIRLPI 215
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ SRTIRLP+
Sbjct: 157 IRQAITRAIAQNSRTIRLPI 176
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Query: 273 KSGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
+ G + RPS ++ D D + + LL A+EE++L+ +Q L++++ L+E
Sbjct: 51 RDGDSLAAARPSGYRKTDSDDAVGAFFKEMARYPLLKADEEVELAKRVQFLVEVDNLQES 110
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 391
LS + T A+ AAA G+ +R+L ++L G + K KMI SN+RLV+SIAK Y G+
Sbjct: 111 LSSKLNRRATQAETAAAFGLTERQLEQKLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQ 170
Query: 392 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 171 FLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 224
>gi|413921194|gb|AFW61126.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 504
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 192 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 250
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q G GL+RG EKFDAS+G
Sbjct: 251 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRG 310
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+T RLP H R
Sbjct: 311 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHER 345
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 104/160 (65%), Gaps = 5/160 (3%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 345
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 88 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLW 147
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 148 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 207
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 208 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 247
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q +K+E ++E L ++ G PT +QWA AA + ELR + G
Sbjct: 23 LLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQAGEA 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 87 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDM 146
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 147 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 206
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 207 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 240
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 117/189 (61%), Gaps = 5/189 (2%)
Query: 259 TRAAEKAAANVMSVKSGST-SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
T A + AA KSG T + RPS +VD YLR LL+ +E+ L
Sbjct: 14 TVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGR 70
Query: 318 GIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
+Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G K++M+ +N+R
Sbjct: 71 QVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLR 130
Query: 377 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 436
LV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + +++++
Sbjct: 131 LVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAE 190
Query: 437 QSRTIRLPV 445
+SRTIRLP+
Sbjct: 191 KSRTIRLPI 199
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA+A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 101/140 (72%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+KL+ +R+ L+E+ P A+W+AAA + + EL++ L+ G
Sbjct: 23 LLTHEEEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEA 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 102/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT A+W+A AG+ + E+ +N G
Sbjct: 99 LLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRR 158
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 159 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 218
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ SRTIRLP+
Sbjct: 219 IRQAITRAIAQNSRTIRLPI 238
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L++R G P+ +WA ++++ L++ L G
Sbjct: 32 LLTHEQEIIYGKQVQTMMNLLEKKEELAQRVGKEPSIQEWAKEVNIEEKALQKALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 86 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDM 145
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 146 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 205
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 206 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 239
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 109/165 (66%), Gaps = 4/165 (2%)
Query: 282 RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT 341
RPS +VD YLR LL+ +E+ L +Q+L++LE + L E+ GG
Sbjct: 38 RPSGTDVDLVRS--YLR-DIGRVPLLSHQQEITLGRQVQELMELESVEAELQEKRGGEAV 94
Query: 342 FA-QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
A + A AAG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG
Sbjct: 95 LAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGT 154
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 155 IGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 199
>gi|219111033|ref|XP_002177268.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411803|gb|EEC51731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 324
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
+ LLTA+EE L IQ ++K E + E LS + PT +WAAA G + +
Sbjct: 9 TELLTADEEYSLGMKIQFMIKCELVHEGLSSKLMRLPTIEEWAAACGGTATDFVEMVMTS 68
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
K +M+ SN+RLV+SIA+ Y G++LQDLVQEG GL R AEKF+ KGFKFSTYA
Sbjct: 69 REAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYAS 128
Query: 424 WWIKQAVRKSLSDQSRTIRLPVISHG--------RGNLQSEGS 458
WWI+QAV +S++ SRTIRLPV H R NLQ E S
Sbjct: 129 WWIQQAVFRSIAYHSRTIRLPVHVHNLLNRVRKVRNNLQRELS 171
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 102/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL+ EE+ + +Q L+ LE LRE + + G PT +QWA AA +
Sbjct: 9 DPVRAYLKEIGRVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKL 68
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++E + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD
Sbjct: 69 SRKEFCSVVEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFD 128
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 129 PTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 104/160 (65%), Gaps = 5/160 (3%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG--GSPTFAQ---W 345
D +R RLL A+EE++L+ I DLL+LE RE + +R G P W
Sbjct: 87 DDSIRVYLQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLW 146
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
A + E RRRL+ G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R
Sbjct: 147 AEEVKMSLPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIR 206
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 207 AAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 246
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 121/200 (60%), Gaps = 3/200 (1%)
Query: 246 VRSRRQTERKARRTRAAEKAAA-NVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
VRS R +R++++ + + + +S G SRRK + ++ D +DPLR +
Sbjct: 203 VRSTRLQDRRSKKRKVPKHVTTIDEISNFRGKDSRRK--TSEKFDPNDPLRLFLWGPETK 260
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLTA EE +L IQDL+ L+ ++ L + PT +WA A G+ + L+ +L+
Sbjct: 261 KLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVFQ 320
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
++K+I +N+R+V+ IAK YQG G++L DL+Q G GL++ EKF G +F +YA+W
Sbjct: 321 TSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAYW 380
Query: 425 WIKQAVRKSLSDQSRTIRLP 444
WI+ ++ K++ SRTIRLP
Sbjct: 381 WIRHSITKAIFQHSRTIRLP 400
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L G P+ A AG+ REL +RL G+
Sbjct: 33 LLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVR 92
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 93 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 152
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 153 IRQGITRAIAEKSRIIRLPI 172
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 91/126 (72%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLV 378
IQ+L+KLEG + L +CG PT +WA A G+ REL+ + G C++KM SN RLV
Sbjct: 5 IQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSNFRLV 64
Query: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
I +A+ Y+G G+++QDLVQ+GC GL++ EKF+ SKG +F TYA+WWI+Q+++KS+ S
Sbjct: 65 IHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNS 124
Query: 439 RTIRLP 444
R IRLP
Sbjct: 125 RLIRLP 130
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|427735326|ref|YP_007054870.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370367|gb|AFY54323.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 332
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ L+ +Q + L L+E LSE+ PT +W+ A ++ EL ++N G +
Sbjct: 35 LLTSEEEIFLAKQVQQRISLLALKEELSEKLQRQPTLQEWSVKAQLNDSELLEQINQGQI 94
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ ++ DL+QEG GL R +KF S G+KFSTYA+WW
Sbjct: 95 AKQKMIAANLRLVVTIAKKYQKRNLDFPDLIQEGTLGLERAVDKFKPSLGYKFSTYAYWW 154
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++S QSRTIRLP+
Sbjct: 155 IRQGITRAISQQSRTIRLPI 174
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 101/157 (64%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D D + L S LL EE++L+ IQ+L+ E L E L+ G +PT ++ A A
Sbjct: 67 DIDDAVGALFKQMSRYPLLNQKEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVA 126
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AG + +L RL+ K +MI+SN+RLV+SIAK Y G+ DL+QEG GL R AE
Sbjct: 127 AGFTESQLDHRLHQCRTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAE 186
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD KG+KFSTYA+WWI+Q + +++++Q RTIRLPV
Sbjct: 187 KFDPDKGYKFSTYAYWWIRQGITRTIANQGRTIRLPV 223
>gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays]
Length = 349
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 37 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRISAPE 95
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA Y G++L DL+Q G GL+RG EKFDAS+G
Sbjct: 96 LRARMRESFLAREMLTMSNIRLVISIAHKYDNLGVDLADLIQGGLIGLLRGIEKFDASRG 155
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+T RLP H R
Sbjct: 156 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHER 190
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y + S +RL EE+ L+ I LL LE + E L E+ SP +WA A + + E
Sbjct: 192 YYKQVNSFARL-HPEEEIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWE 250
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L RL G K++M+T+N+RLV S+AK YQ G++ QDL+QEG GL+R EKFD +KG
Sbjct: 251 LCDRLEQGRRAKNQMVTANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKG 310
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTY WWI+QA+ +++ D SR +RLPV
Sbjct: 311 YKFSTYGIWWIRQAITRAICDYSRIVRLPV 340
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 144 bits (363), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ +Q L++++ + E L + G PT A+ A A + +R+ RL G +
Sbjct: 76 LLKPEEEIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQI 135
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+WW
Sbjct: 136 SKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWW 195
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 196 IRQAITRTIANDARTIRLPI 215
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLPKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 237
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 144 bits (363), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 83 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 142
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 143 PLSKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 202
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 203 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 236
>gi|2624403|emb|CAA74653.1| plastid RNA polymerase sigma factor [Sorghum bicolor]
Length = 500
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+ RLP H R
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHER 341
>gi|242078297|ref|XP_002443917.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
gi|241940267|gb|EES13412.1| hypothetical protein SORBIDRAFT_07g004340 [Sorghum bicolor]
Length = 500
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 188 YLRGTVSKD-LLTHKQVIQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLHISPPE 246
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 247 LRARMRESFLAREMLTMSNIRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 306
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+ RLP H R
Sbjct: 307 FRISTYVYWWIRQGVSRALADNSKAFRLPTYLHER 341
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 100/154 (64%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R RLL +EE++L+ I DLL+LE L G P+ +WA +
Sbjct: 84 DSIRVYLQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDM 143
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ RRRL G K+KM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD
Sbjct: 144 PLAKFRRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFD 203
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 204 HEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 237
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ +Q L++ E R+ L E PT A+W A G + Q++ RL+ G
Sbjct: 70 LLNAQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGR 129
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 130 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 189
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 190 WIRQAITRTIANDARTIRLPI 210
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 106/193 (54%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 330
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 331 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 RIIAEKSEKEPKLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 106/193 (54%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------------- 330
D +R RLL A EE++L+ I DLLKLE +RE
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQVFLFERIE 126
Query: 331 -VLSERCGGSPTFA-----------------QWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+++E+ P + +W A + +RRL +G K+KM+
Sbjct: 127 KIIAEKSEKEPKLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 39/193 (20%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE--------------VLSERCG 337
D +R RLL A EE++L+ I DLLKLE +RE L ER
Sbjct: 67 DSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFRLYTDAEWGKQVFLFERIE 126
Query: 338 G-------------------------SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMIT 372
+P +W A + +RRL +G K+KM+
Sbjct: 127 KIIVEKSEKEPKLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQ 186
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ +
Sbjct: 187 SNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITR 246
Query: 433 SLSDQSRTIRLPV 445
+++DQSRTIRLPV
Sbjct: 247 AIADQSRTIRLPV 259
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA---QWAAA 348
D +R RLL A+EE++L+ I DLL+LE RE L+ P +WA
Sbjct: 81 DSIRLYLQEIGRIRLLRADEEIELARKIADLLELELKREELATEADCHPDDVREPEWAIK 140
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
G+ E R+RL+ G KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AE
Sbjct: 141 MGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 200
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 201 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPV 237
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L ++ +RE LS+R G P +WA AA + + EL+ +N G L
Sbjct: 23 LLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNRGEL 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLNAEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L+ L+ ++ L E G +W+ AAG+ + EL +L +G
Sbjct: 32 LLTHEEEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+++AK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ QSRTIRLP+
Sbjct: 152 IRQAITRAIAQQSRTIRLPI 171
>gi|326512474|dbj|BAJ99592.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 312
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D SRT RLP H R
Sbjct: 313 FRISTYVYWWIRQGVSRALADNSRTFRLPTYMHER 347
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 32 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ IQ L ++E LR E G P A+ A A G+ +R+L +RL+ +
Sbjct: 67 LLKPDEEVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQV 126
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 127 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 186
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ +RTIRLP+
Sbjct: 187 IRQGITRTIANDARTIRLPI 206
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L ++ L++R G P+ +WA AA + +L R L G
Sbjct: 49 LLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEWAEAADLSVTKLHRYLGQGER 108
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 109 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 168
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 169 IRQAITRAIAQQGRTIRLPI 188
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L++L L E L+ G PT A+ A A + +L L G
Sbjct: 30 LLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRKGQR 89
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 90 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 149
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 150 IRQAITRAIAQQARTIRLPI 169
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q+L+ LE L L + G P+ A A+G+ +L+R+L +G
Sbjct: 40 LLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQHGRR 99
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q + L +++ L E+ G PT++QWA A + +EL+ L G
Sbjct: 23 LLTHEEEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEA 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LL+A EE++L+ ++ L++ E +R+ L E PT +WA A +D +R+L RL G
Sbjct: 78 LLSAEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGR 137
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 138 TAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 197
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 198 WIRQAITRTIANDARTIRLPI 218
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 127/205 (61%), Gaps = 11/205 (5%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 300
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 256 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 307
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 308 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 367
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 368 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 427
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
Y +WI++++ ++ +R +++P
Sbjct: 428 YVQYWIRKSMSTLVARHARGVKIPF 452
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 132/215 (61%), Gaps = 12/215 (5%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRK---RPSVQEVDYSDPLRYLRAT 300
+ VRS ++ ERK++R RA EKA N+ + S + RK RPSV V +
Sbjct: 206 VVVRSGKKEERKSKRERALEKAD-NIYAFPLPSKTIRKGPGRPSVSTVKRT-------LN 257
Query: 301 TSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL 360
+ RL+ A E ++S G++ + LE +R L E G + + WA AAGVD++ L+++L
Sbjct: 258 SRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQL 317
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
+G C+D+++ S LV+ IA+NY+G G+ +D++Q G G+++GAE+FD +KG++FST
Sbjct: 318 QFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFST 377
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV-ISHGRGNLQ 454
Y +WI++++ ++ +R +++P ++ G +Q
Sbjct: 378 YVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQ 412
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 39 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ SRTIRLP+
Sbjct: 159 IRQAITRAIAQNSRTIRLPI 178
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ QSRTIRLP+
Sbjct: 152 IRQAITRAIAQQSRTIRLPI 171
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L +R+ L++ PT +W+A AG+ + E+ +N G
Sbjct: 37 LLTREEEIIYGKKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 97 AKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ SRTIRLP+
Sbjct: 157 IRQAITRAIAQNSRTIRLPI 176
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L++LE + L E+ GG A + A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L L ++E L+E+ G PT +W+ AAG+ EL++ + G
Sbjct: 23 LLTHEQEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGET 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum]
Length = 461
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 149 YLRGTVSKE-LLTQKQVVHLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 207
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 208 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 267
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+T RLP H R
Sbjct: 268 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHER 302
>gi|194699556|gb|ACF83862.1| unknown [Zea mays]
gi|223944677|gb|ACN26422.1| unknown [Zea mays]
gi|413917282|gb|AFW57214.1| RNA polymerase sigma factor 1 isoform 1 [Zea mays]
gi|413917283|gb|AFW57215.1| RNA polymerase sigma factor 1 isoform 2 [Zea mays]
gi|413917284|gb|AFW57216.1| RNA polymerase sigma factor 1 isoform 3 [Zea mays]
Length = 496
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 184 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 242
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 243 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 302
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D SR+ RLP H R
Sbjct: 303 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHER 337
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L R+ L++ G TF +WAAA + EL L G
Sbjct: 14 LLTHEQEIILGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGER 73
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DLVQEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 74 AKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWW 133
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 134 IRQAITRAIAQQARTIRLPI 153
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 102/151 (67%), Gaps = 2/151 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L+ LE L L ++ GG +WA AAG+
Sbjct: 13 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAA 71
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++
Sbjct: 72 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 131
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 132 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 162
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|326523529|dbj|BAJ92935.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 506
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L+E G P++ Q A + + E
Sbjct: 194 YLRGTVSKE-LLTHKQVVHLSKKIKDGIWLQQQRSKLTEILGNEPSYKQMAQSLRISTPE 252
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SNIRLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 253 LRSRMRESFLAREVLTMSNIRLVISIAQKYDKLGVELSDLIQGGLIGLLRGIEKFDASRG 312
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+T RLP H R
Sbjct: 313 FRISTYVYWWIRQGVSRALADNSKTFRLPTYMHER 347
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + IQ+L+ LE +E L+++ PT +WA AA + ++ L+ ++ G
Sbjct: 23 LLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQGEK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SR IRLP+
Sbjct: 143 IRQAITRAIAEKSRAIRLPL 162
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 103/154 (66%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+ L + LLTA EE++L+ +Q+L+ L+ L + L + PT A+ AAA G+
Sbjct: 45 DPVGALFKEMARYPLLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGI 104
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ +L++ + K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD
Sbjct: 105 SETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFD 164
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA+WWI+Q + +++++Q RTIRLPV
Sbjct: 165 PEKGYKFSTYAYWWIRQGITRTIANQGRTIRLPV 198
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 100/160 (62%)
Query: 286 QEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW 345
++V+ D +R LL+ +E+ +Q ++ L +E L+E PT +W
Sbjct: 12 KKVNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQIMMSLYAQKEELAENLDREPTLEEW 71
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
A AA EL++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL R
Sbjct: 72 AQAAEKTPAELKKLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 132 GVEKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L+++E L L R G P Q A AA + +L+R+L G
Sbjct: 37 LLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQGHR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 157 IRQGITRAIAEKSRTIRLPI 176
>gi|297608012|ref|NP_001061065.2| Os08g0163400 [Oryza sativa Japonica Group]
gi|255678168|dbj|BAF22979.2| Os08g0163400 [Oryza sativa Japonica Group]
Length = 520
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 208 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 266
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 267 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 326
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 327 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 361
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ +Q ++ L+G+ E L + PT +WA AA + + EL R L G
Sbjct: 31 LLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQGRQ 90
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD S+G+KFSTYA+WW
Sbjct: 91 AKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYKFSTYAYWW 150
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q R+IRLP+
Sbjct: 151 IRQAITRAIAQQGRSIRLPI 170
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 103/155 (66%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+ L + LLTA EE++L+ +Q+L+ L+ + + L + PT A+ AAA G
Sbjct: 44 DDPVGALFKEMARYPLLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALG 103
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ + +L++ + K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R AEKF
Sbjct: 104 ISETQLQQLRHQCQSAKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKF 163
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KG+KFSTYA+WWI+Q + +++++Q RTIRLPV
Sbjct: 164 DPEKGYKFSTYAYWWIRQGITRTIANQGRTIRLPV 198
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L+ IQ+L+ LE RE L ++ P+ +WA AA + ++ L +++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+SIAK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SR IRLP+
Sbjct: 143 IRQAITRAIAEKSRAIRLPL 162
>gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays]
Length = 398
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 86 YLRGTVSKD-LLTHKQVVQLSRKIKDGIWLQHQRSKLKEKLGNEPSYKQLAQSLRIPAPE 144
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SN RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 145 LRARMRESFLAREMLAMSNTRLVISIAQKYDNLGVELPDLIQGGLIGLLRGIEKFDASRG 204
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D SR+ RLP H R
Sbjct: 205 FRISTYVYWWIRQGVSRALADNSRSFRLPTYLHER 239
>gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 207 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 265
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 266 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 325
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 326 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 360
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ +E L+++ G PT +W+ ++Q+ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L+ +RE L ER PT +WA AAGV + +L + + G L
Sbjct: 23 LLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQEGEL 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +E R+ L+ G SPT + AA + +EL R+L+ G L
Sbjct: 78 LLQPDEEIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRL 137
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+WW
Sbjct: 138 AKRQMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWW 197
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 198 IRQAITRTIANDARTIRLPI 217
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 5/174 (2%)
Query: 272 VKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREV 331
VKS R+ P+ +VD YLR LL+ +E+ L +Q+L+ LE L
Sbjct: 26 VKSAVVPARQLPA--DVDLVRS--YLRDIGRVP-LLSHEQEITLGRQVQELMSLEQLESE 80
Query: 332 LSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMN 391
L + G + + A AAG+ + +L+++L G K++M+++N+RLV+S+AK Y M
Sbjct: 81 LEGKTGAPASRKELAKAAGLSELQLKKKLQIGRRAKERMVSANLRLVVSVAKKYTKRNME 140
Query: 392 LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 141 LLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 194
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L++ G P+ +WA ++++ L + L G
Sbjct: 32 LLTHEQEIIYGKQVQKMMSLLETKEELAQSLGKEPSLQEWAKEVNLEEKALTKALEQGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE+ L+ +Q +L++E + E L + P+ A+ A + G+++++L RL +
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ SRTIRLP+
Sbjct: 195 IRQAITRTIANDSRTIRLPI 214
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + +Q L++LE + L E+ + A+WA AA V +LR+ ++ G +
Sbjct: 23 LLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDAGEV 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SRTIRLP+
Sbjct: 143 IRQAITRAIAEKSRTIRLPI 162
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P +WA + + + EL R L G
Sbjct: 32 LLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKTGDR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|357144851|ref|XP_003573435.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 531
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR + S LLT + +QLS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 219 YLRGSVSKE-LLTHKQVVQLSKKIKDGIWLQQQRSKLKEKLGNEPSYKQMAQSLRISTPE 277
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R+ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 278 LRSRMRDSFLAREVLTMSNLRLVISIAQKYDKLGVELPDLIQGGLIGLLRGIEKFDASRG 337
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L+D S+T RLP H R
Sbjct: 338 FRISTYVYWWIRQGVSRALADNSKTFRLPTYLHER 372
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L+ ++E L + G PT +WA AA + EL +N G +
Sbjct: 23 LLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINAGEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|125602291|gb|EAZ41616.1| hypothetical protein OsJ_26150 [Oryza sativa Japonica Group]
Length = 420
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 108 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 166
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 167 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 226
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 227 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 261
>gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 76 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 134
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 135 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 194
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 195 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 229
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 145 IRQGITRAIAEKSRTIRLPI 164
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +++ L++ G P+ +WA A + + EL++ + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMSLFEMKDQLTQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|125560253|gb|EAZ05701.1| hypothetical protein OsI_27933 [Oryza sativa Indica Group]
Length = 372
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 60 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 118
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 119 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 178
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 179 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 213
>gi|219130701|ref|XP_002185497.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403028|gb|EEC42984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 329
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R T + LL NEE+ L +Q L++ E RE L PT+ +WA
Sbjct: 1 DSIRSYIKTMCNHELLNKNEEIILGREVQVLIQYEATREQLEAELLRPPTYQEWATKIQP 60
Query: 352 DQR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
D +L++++ + K + SNIRLV+SIAK YQ G++ QDL QEG GL R EK
Sbjct: 61 DMMVPDLKKQIRRSLRAKAALTESNIRLVVSIAKRYQHRGLSFQDLAQEGILGLTRACEK 120
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGN 452
FD +GF+FSTYA WWIKQ++ ++++DQ RTIRLPV H + N
Sbjct: 121 FDPERGFRFSTYASWWIKQSIMRAIADQGRTIRLPVHIHDQIN 163
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q + L L+ + E G P+ +WA AA +D L ++L+ G
Sbjct: 32 LLTHEQEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +MI +N+RLV++IAK YQ + DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 92 AKRQMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 103/162 (63%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
S Q+ Y D + + LL +EE++L+ ++ E R+ L+E+ G PT
Sbjct: 56 SSQKSKYEDTVGAFFKEMARYPLLQPDEEVELAQQVKLAADFEHKRQELAEKLGSPPTKQ 115
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
Q A A + +EL R+L G + K +MI SN+RLV+SIAK Y G+ DL+QEG GL
Sbjct: 116 QLAEALEMGVKELDRKLYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGL 175
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R AEKFD +KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 176 NRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPI 217
>gi|443316918|ref|ZP_21046344.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783448|gb|ELR93362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 317
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L LE RE L+E +PT A+WAAA + + +L + G
Sbjct: 22 LLTHEEEIVLGKQVQHLSLLEKRREALTEELDRTPTQAEWAAAVNLSEGQLLTIVRAGDT 81
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 82 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 141
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SRTIRLP+
Sbjct: 142 IRQAITRAIAEKSRTIRLPI 161
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ +E L++R G P++A+WA AGV +EL++ L G
Sbjct: 24 LLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALEDGQT 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++KL +E L+++ G + +W G+ + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 82 LKKTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q+L++L RE L ER TF++WA A + ++ELRR + G
Sbjct: 32 LLTHEEEIVYGKQVQELMRLLAERETLEERLERESTFSEWAEAIKLSEKELRRAVAVGER 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 123/215 (57%), Gaps = 12/215 (5%)
Query: 241 SQSIAVRSRRQTERKARRTRAAEKAAANVMSV------KSGSTSRR-KRPSVQEVDYSDP 293
S S + R+RR R+ R A + + + +++ + G RR K VQ DY
Sbjct: 302 SGSPSARTRRLESRQRRVAIAGKPTSPDALTIHPLKKYQKGERVRRVKFDGVQ--DYLTT 359
Query: 294 LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ 353
YLR T + LLT EE+ LS ++ L L R+ L+ G P+ +WA +
Sbjct: 360 --YLREITKIN-LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSV 416
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
+L R+L +DKM+ +N+RLV+S+AK Y G+ + DL+QEG GL+RG EKFD +
Sbjct: 417 GDLVRKLGEAEWARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHT 476
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
+G+K STY HWWI+Q V ++++D SRT+RLPV H
Sbjct: 477 RGYKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVH 511
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/140 (48%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+ +E LSE+ PT +WA A G++ L L G
Sbjct: 38 LLTNEEEIIYGKQVQHLMGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WW
Sbjct: 98 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 157
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLPV
Sbjct: 158 IRQAITRAIAQQARTIRLPV 177
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR+IRLP+
Sbjct: 160 IRQGITRAIAEKSRSIRLPI 179
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L L++ + + G P+ +WA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQGQQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|323453176|gb|EGB09048.1| hypothetical protein AURANDRAFT_53467 [Aureococcus anophagefferens]
Length = 468
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 104/177 (58%), Gaps = 7/177 (3%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
+V D + L + + LL+++EE L+ +Q L EG+R L+ G PT
Sbjct: 126 AVSYKDRDEGLHWQIRNMGQTALLSSDEEKALARRVQRLCTWEGIRANLTASLGREPTEL 185
Query: 344 QWAAAAGV-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 398
+W AAA + + + + K MI +N+RLV+SI+K YQ G++ QD++QE
Sbjct: 186 EWGAAARISRAACENGSFEKARKKCLKAKAAMINANLRLVVSISKRYQHRGLHFQDVIQE 245
Query: 399 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNLQS 455
G GL R EKFD KGFKFSTYA WWIKQAV ++++DQSRTIRLPV H LQS
Sbjct: 246 GTFGLTRAVEKFDPEKGFKFSTYATWWIKQAVMRAIADQSRTIRLPV--HVHDQLQS 300
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQ 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L+R L G K KMI +N+RLV++IAK YQ + DL+QEG GL RG EKFD +KG
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G+
Sbjct: 32 LLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQKGVQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQG + DL+QEG GL RG EKFD+++G+KFSTYA+WW
Sbjct: 92 AKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFDSTRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I Q + +++S QSRTIRLP+
Sbjct: 152 ISQGMTRAISQQSRTIRLPI 171
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L++LE L E+ +R G + A+ A AAG+
Sbjct: 4 YLRDIGRVP-LLSHQQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSAL 62
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++
Sbjct: 63 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 122
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 123 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 153
>gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 427
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD S LL+A EE++LS I+DL++LE +++ L+ R G P +WA AAG
Sbjct: 102 SDSFNSFIKEVGSFELLSAEEEIELSRQIRDLVQLETVKKRLAARIGREPREDEWAMAAG 161
Query: 351 VDQRE-LRRRLNYGILCKDKMITSNIRLVISIAKNYQGA-GMNLQDLVQEGCRGLVRGAE 408
+ R+ G + +++ SN+R V+SIAK Y M LQDL+QEG GL++ AE
Sbjct: 162 TQPGPAFQSRILKGRRARARLVQSNLRWVVSIAKKYANKHTMPLQDLIQEGSIGLMKAAE 221
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
+FD KGFKF TYA WWI+QA+ +SL DQ RTIRLPV H
Sbjct: 222 RFDLDKGFKFLTYATWWIRQAIFRSLQDQGRTIRLPVHVH 261
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPT-FAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE L E+ GG A+ A AAG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+E+ PT ++WAA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITLGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+R IRLP+
Sbjct: 152 IRQAITRAIAQQARAIRLPI 171
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+D +R YLR LLT +E+ +Q L+ L ++ L E G P+ +WA AA
Sbjct: 8 TDTVRTYLREIGRVP-LLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAA 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+D+ +L++ ++ G K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 NIDELQLQKTISAGENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKG++FSTYA+WWI+QA+ +++++++R IRLP+
Sbjct: 127 FDPSKGYRFSTYAYWWIRQAITRAIAEKARAIRLPI 162
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL A EE++L+ +Q LL++E ++ L E +P+ A+ A A G + ++ RL+ G
Sbjct: 75 LLNAEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGR 134
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 135 IAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 194
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 195 WIRQAITRTIANDARTIRLPI 215
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/141 (48%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+QL+ ++ L E R L+E G SP+ +WAA + REL +L G
Sbjct: 74 LLKPDEEIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGR 133
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 134 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 193
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 194 WIRQAITRTIANDARTIRLPI 214
>gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T S LLT + + LS I+D + L+ R L E+ G P++ Q A + + E
Sbjct: 30 YLRGTVSKE-LLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPE 88
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LR R++ L ++ + SN+RLVISIA+ Y G+ L DL+Q G GL+RG EKFDAS+G
Sbjct: 89 LRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRG 148
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGR 450
F+ STY +WWI+Q V ++L++ S+T RLP H R
Sbjct: 149 FRISTYVYWWIRQGVSRALAENSKTFRLPTYLHER 183
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 25 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 84
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 85 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 144
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 145 IRQGITRAIAEKSRTIRLPI 164
>gi|299472559|emb|CBN79861.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 694
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T + LL +EE+ L IQ + E R+ L G P+ +WA A G+D+ E
Sbjct: 54 YLR-TVAKVDLLKPHEEIVLGRQIQKGVSYENTRDHLQLMRGYEPSEEEWAVALGMDREE 112
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + L+ K M+ +N+RLV+S+AK Y+ ++ QDL+QEG GLV+ AEKFD +G
Sbjct: 113 LVKELSRASKAKMAMLAANLRLVVSVAKRYRFQKLSFQDLIQEGTFGLVKAAEKFDPERG 172
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
FKFSTYA WWIKQ++ + ++DQSR IRLPV H
Sbjct: 173 FKFSTYATWWIKQSIMRGIADQSRIIRLPVHVH 205
>gi|449019011|dbj|BAM82413.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 649
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 104/194 (53%), Gaps = 26/194 (13%)
Query: 283 PSVQEVDYS--DP------------------------LRYLRATTSSSRLLTANEEMQLS 316
PS++E+DYS DP LR+ +LT EE+ LS
Sbjct: 289 PSIRELDYSEDDPSDNEPLAWETYPETPRARSSESSTLRWYLRMIGRVDMLTPEEEVSLS 348
Query: 317 AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
I LL E R L +PT + A GVD RR L KD+M+ +N+R
Sbjct: 349 RQISRLLHWERKRIELHGALDRAPTDDELAEHLGVDPERFRRNLAEARRAKDRMVAANLR 408
Query: 377 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 436
LV+SIAK Y G+ L+DL+QEG GL+R AEKFD +G +FSTYA WW+KQ+V ++L+D
Sbjct: 409 LVVSIAKRYMRKGLPLEDLIQEGSLGLIRAAEKFDDRRGCRFSTYATWWVKQSVMRALAD 468
Query: 437 QSRTIRLPVISHGR 450
Q R +RLPV H R
Sbjct: 469 QGRIVRLPVHMHDR 482
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE L L ++ GG + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 159 WIRQGITRAIAEKSRTIRLPI 179
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ L ++ LS G P F+QWA A ++++EL++ + L
Sbjct: 23 LLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIATAEL 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++R IRLP+
Sbjct: 143 IRQAITRAIAEKARAIRLPI 162
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 99/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+L+ LE L L + G + + A AAG+ + +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+++N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SRTIRLP+
Sbjct: 160 IRQGITRAIAEKSRTIRLPI 179
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +EE+ +Q ++ L ++ L++ P+ +WAA + ++E
Sbjct: 23 YLREIGRVP-LLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+ + + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 82 VTQIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G PT +WAAA+ ++ EL + + G +
Sbjct: 23 LLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAVGEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 143 IRQAITRAIAEKARTIRLPI 162
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ L+ +Q L++++ L+E L G P A+ A + +R+L RL G +
Sbjct: 79 LLKPEEEVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWW 198
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 199 IRQAITRTIANDARTIRLPI 218
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +EVL+++ P+ +WAA + E
Sbjct: 23 YLREIGRVP-LLTREQEIVYGKQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E LS++ G P+ +WA + E+ + + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 99/155 (63%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D +R LL+ EE+ + ++ L++L ++E L+E+ P+ + WA A
Sbjct: 20 TDTVRSFLVQIGRVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVE 79
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ +L+ L+ G + + KMI +N+RLV++IAK YQ + DL+QEG GL RG EKF
Sbjct: 80 MTPTQLQETLDNGEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKF 139
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KG+KFSTYA+WWI+QA+ ++L +SR+IRLP+
Sbjct: 140 DPDKGYKFSTYAYWWIRQAITRALDQKSRSIRLPI 174
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 94/147 (63%), Gaps = 7/147 (4%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 358
LL +EE+ L+ +QD +KL LR L + G PT A+W A A + +L++
Sbjct: 60 LLGRDEEVALAQKVQDYMKLLDLRLRLQKELGRDPTLAEWVAKANQYPEWAQLTPEKLQQ 119
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 120 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 179
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPV 445
STYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 180 STYAYWWIRQGITRAIATQSRTIRLPV 206
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE+ L+ ++ L++++ L L E+ PT A+ AAA + +R+L L G +
Sbjct: 75 LLKPDEEVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRV 134
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 195 IRQAITRTIANDARTIRLPI 214
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 7/147 (4%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-------VDQRELRR 358
LL +EE+ L+ +QD +KL +R L + G PT A+WAA A + +L++
Sbjct: 58 LLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWANLTPEKLQQ 117
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD KG++F
Sbjct: 118 IQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRF 177
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPV 445
STYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 178 STYAYWWIRQGITRAIATQSRTIRLPV 204
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ I+ L ++E LR L++ G P+ A+ A A G+ +R+L +L+ +
Sbjct: 109 LLKPDEEVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRV 168
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 169 AKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 228
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ SRTIRLPV
Sbjct: 229 IRQGITRTIANDSRTIRLPV 248
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+ + G P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQRMMTLLEKKEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q L++L RE L+ SPT +WA A + +L + G
Sbjct: 32 LLTHEQEIVLGKQVQQLMELLEAREKLTTSLDRSPTAEEWAEQANLSVADLNTAVRRGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RT+RLP+
Sbjct: 152 IRQAITRAIAQQARTVRLPI 171
>gi|443316147|ref|ZP_21045603.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784247|gb|ELR94131.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 318
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ ++ ++ + LRE L E G P++A WA G+D L+ ++ G
Sbjct: 22 LLTHEQEINYGKQVKQMMVVLALREDLMEPLGAEPSWAAWAEETGLDVETLQAQVAAGEA 81
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK Y ++L DLVQEG GL R EKFD +KG++FSTYA+WW
Sbjct: 82 AKSKMIEANLRLVVSIAKKYTDRNLDLLDLVQEGSIGLNRAVEKFDPAKGYRFSTYAYWW 141
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SRT+RLP+
Sbjct: 142 IRQAMTRAIAEKSRTVRLPI 161
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +QDL+ LE L L G P +A AG+ +L+++L G
Sbjct: 40 LLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKSGRR 99
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 100 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 159
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR+IRLP+
Sbjct: 160 IRQGITRAIAEKSRSIRLPI 179
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++ L L++ + G P+ +WAA A + +L L+ G
Sbjct: 32 LLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQGQQ 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G PT +WAA+A V+ EL + G +
Sbjct: 37 LLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAEGEI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L++L L++ L + G S T + AAA + +++L+ R+ G +
Sbjct: 74 LLQPSEEIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQV 133
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DLVQEG GL R EKFD KGFKFSTYA+WW
Sbjct: 134 AKSKMIRSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFSTYAYWW 193
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ SRTIRLP+
Sbjct: 194 IRQGITRAIANDSRTIRLPI 213
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+ G P +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ ++E LS + PT +WAA+AG++ EL + + G +
Sbjct: 23 LLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIALGEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 109/171 (63%), Gaps = 6/171 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
+T+ +RP V D +R YLR LL+ +E+ L +Q+L++LE
Sbjct: 3 TTAVDQRPPVD----GDLVRSYLRDIGRVP-LLSHEQEITLGRQVQELVRLEEAEAEFKM 57
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
R G P+ + A++ G+ LRRRL G K++M+ +N+RLV+S+AK Y M L D
Sbjct: 58 RQGHEPSREELASSFGISPAVLRRRLINGRRAKERMVAANLRLVVSVAKKYTKRNMELLD 117
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 118 LIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 168
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+ L+ ++ +++ E +R+ L E+ +P+ +WA A G+ REL + L G
Sbjct: 76 LLNTDEEVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGK 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 136 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL +EE+QL+ ++ L E R L E+ G SPT +WA+ G++ ++L L G
Sbjct: 66 LLKPDEEIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGR 125
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 126 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 185
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 186 WIRQAITRTIANDARTIRLPI 206
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L ++ ++ L E+ G PT Q AA + +++L RL G +
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 100/173 (57%), Gaps = 4/173 (2%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
K ST R RP V D +R LLT EE+ +Q ++K ++ L
Sbjct: 9 KDQSTKRNTRPGVS----VDTVRTYLHEIGRVPLLTQEEEIHYGKQVQQMMKQLEEKDKL 64
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+++ P+ +WA + + EL R L+ G K KMI +N+RLV+SIAK YQ M
Sbjct: 65 TKKLEHEPSKTEWANEVELTEDELDRILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEF 124
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL RG EKFD +G+KFSTYA+WW++QA+ ++++ RTIRLP+
Sbjct: 125 LDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWVRQAITRAIAQNGRTIRLPI 177
>gi|427735339|ref|YP_007054883.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427370380|gb|AFY54336.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 339
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+ EE+ L+ +Q + L ++E LS++ PT +W+ A ++ EL +++ G
Sbjct: 44 LLTSEEEINLAKKVQQRMSLLAIKEELSKKLQRQPTLQEWSDKAQLNDTELLEQIDRGQR 103
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ ++ DL+QEG GL R +KF + G+KFSTYA+WW
Sbjct: 104 AKQKMIAANLRLVVTIAKKYQKRNLDFLDLIQEGTLGLERAVDKFQPALGYKFSTYAYWW 163
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++S QSRTIRLP+
Sbjct: 164 IRQGITRAISQQSRTIRLPI 183
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+E PT +WA +++ L++ +N G
Sbjct: 57 LLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQGTR 116
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 117 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 176
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+R IRLP+
Sbjct: 177 IRQAITRAIAQQARAIRLPI 196
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL ANEE++L+ I+ L+ + L E L+ G P ++ A A G+ + EL + GI+
Sbjct: 33 LLKANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGII 92
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI+SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++Q RT+RLPV
Sbjct: 153 IRQGITRTIANQGRTVRLPV 172
>gi|62701715|gb|AAX92788.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
Length = 368
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 243 SIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTS 302
SIAV+S RQTER+ARRTRAA KAA V + +TS +K+ S ++PL L T
Sbjct: 201 SIAVKSARQTERRARRTRAAIKAATIVRTSPKPATSSKKKRSKGASSGTNPLGSLWKMTG 260
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
RLLTA EE++ S GIQDLLKLE ++ L+E GG PTFAQWA AAGVD+R LR+RL++
Sbjct: 261 R-RLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
GI CK++M+TSN+RLVISIA+ ++G GM L DL+Q
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQ 354
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++ L+E L G PT AQ A + +++L RL G +
Sbjct: 90 LLKPDEEVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRV 149
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 150 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 209
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 210 IRQAITRAIANDARTIRLPI 229
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 106/163 (65%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P+ Q +D +R S LLT +E+ L +Q+L+ ++ + L + G PT
Sbjct: 4 PNDQTSSDADLVRSYLKEISRIPLLTHEQEITLGRQVQELICIQETEQKLELKNGIKPTQ 63
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+ A + + +++R++ +G K++M++SN+RLV+SIAK Y M L DLVQEG G
Sbjct: 64 EELANSLDLSINQVKRKIIHGKRAKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIG 123
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+RG EKFD ++G+KFSTYA+WWI+Q + +++S+QSRTIRLP+
Sbjct: 124 LIRGVEKFDPTRGYKFSTYAYWWIRQGITRAISEQSRTIRLPI 166
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ L +Q L+ L + L + PT +WAAA G+ + EL + G
Sbjct: 3 LLTHEEEILLGKQVQKLMSLIAIHSSLVDTLDREPTRTEWAAAGGISEAELAAIVTAGEQ 62
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 63 AKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYAYWW 122
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SRTIRLP+
Sbjct: 123 IRQAITRAIAEKSRTIRLPI 142
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 103/156 (66%), Gaps = 2/156 (1%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD +R YLR LLT +E+ +Q L L ++ L+ R G +P+F +WA A+
Sbjct: 8 SDLVRTYLREIGRVP-LLTHEQEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQAS 66
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ EL++ + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EK
Sbjct: 67 QLSSAELKQAIAEGEYAKRKMVEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEK 126
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG++FSTYA+WWI+QA+ ++++++ RTIRLP+
Sbjct: 127 FDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPI 162
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L ++E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 4/172 (2%)
Query: 274 SGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
+ + + RP++ ++D +R LLT +E+ +Q ++ L +E ++
Sbjct: 4 ANTVENKNRPTL----HTDMVRTYLHEIGRVPLLTHEQEIIYGKQVQQMMALLQKQEAIA 59
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 393
E G P+ +WA + + +L + L G K KMI +N+RLV+SIAK YQ +
Sbjct: 60 ETLGREPSQQEWAEGVQLSEADLAKALKQGQRAKQKMIEANLRLVVSIAKKYQKRNLEFL 119
Query: 394 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL RG EKFD S+G+KFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 120 DLIQEGTLGLERGVEKFDPSRGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L++ E R+ L PT +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQQLQIDLQRPPTKLEWAQAMGLQNERQLENRLYRGR 132
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 133 SAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 193 WIRQAITRTIANDARTIRLPI 213
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L+ L++ L E+ P ++WA A + +L++ L G
Sbjct: 23 LLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKLGQT 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD +KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++Q RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa]
Length = 431
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 4/161 (2%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQ 353
RYL+ S LL A +E++L+ I+ KLE ++E + + G PT +WA AA + D
Sbjct: 116 RYLQEIGEIS-LLKAEDEIELAKRIETFRKLEKVKEHMKWKTGVEPTDEEWARAAALSDA 174
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNY--QGAGMNLQDLVQEGCRGLVRGAEKFD 411
ELR + G L +D+++ +N+R V+++AK Y Q M++QDL+QEG GL+R EKFD
Sbjct: 175 EELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMSMQDLIQEGNIGLIRAVEKFD 234
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGN 452
G++F+TYA WWI+QA+ +S+ + SR IRLP H + N
Sbjct: 235 PRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKIN 275
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 111/180 (61%), Gaps = 9/180 (5%)
Query: 267 ANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 325
AN+ S+ S + + P+ D +R YLR LLT +E+ +Q L
Sbjct: 5 ANLASLNSSAMKTAQTPT-------DIVRTYLREIGKVP-LLTHEQEIYYGKQVQKSTAL 56
Query: 326 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
++ L++ P+ +WA AA +D +EL R L G + K KM+ +N+RLV+S+AK Y
Sbjct: 57 YETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLRLVVSVAKKY 116
Query: 386 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++L DL+QEG G+ RG EKFD SKG++FSTYA+WWI+QA+ +++++++RTIRLP+
Sbjct: 117 IKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAEKARTIRLPI 176
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 113/180 (62%), Gaps = 5/180 (2%)
Query: 270 MSVKSGSTSRRKRPSV---QEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKL 325
M+V++ TS RK V + +D +R YLR LL+ ++E+ L +Q+L+ L
Sbjct: 1 MAVQAEITSSRKIIPVTLEKSTSDNDLIRSYLRDIGRVP-LLSNDQEITLGRHVQELMAL 59
Query: 326 EGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNY 385
E L + G P + A+AAG+ L+++ G K++M+ +N+RLV+SIAK Y
Sbjct: 60 ENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRLGERAKERMVAANLRLVVSIAKKY 119
Query: 386 QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GLVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SR IRLP+
Sbjct: 120 TKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPI 179
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF-AQWAAAAGVDQRELRRRLNYGI 364
LLT EE+ + IQ ++ L +++ L+E G P ++WA AA + REL + + G
Sbjct: 22 LLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIKEGE 81
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 82 RAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 141
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++++SRTIRLP+
Sbjct: 142 WIRQAITRAIAEKSRTIRLPI 162
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L LE +E L E+ G PT +WA A+ + + EL+ + G
Sbjct: 35 LLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRAGQT 94
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 95 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 154
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 155 IRQAITRAIAEKGRTIRLPI 174
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 89/140 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ G +WA +D EL + G
Sbjct: 32 LLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQKGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KGFKFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ ++ +++ E +++ L P A+ A G+ +R+L RL G +
Sbjct: 86 LLKPEEEVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRV 145
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 146 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWW 205
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 206 IRQAITRAIANDARTIRLPI 225
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ +Q + L+ L++ L E PT A+WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKLGHK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++Q RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L + + L E+ G P+ A+ AA + +R+L RL G +
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R +EKFD KG+KFSTYA+WW
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 209 IRQAITRAIANDARTIRLPI 228
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL EE++L+ ++ +++ E +R+ L E+ PT +W A ++ R+L RL G
Sbjct: 69 LLKPEEEVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGR 128
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 129 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 188
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 189 WIRQAITRTIANDARTIRLPI 209
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L +++L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 95/142 (66%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
+ +LLT EE QL + IQ+L +LE ++ L + G PT A+WA G+ L+ +L
Sbjct: 8 TKKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRS 67
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G K+K+I +N+R+V+ +AKNY G G++ QDL+QEG GL++ EKF G +F++YA
Sbjct: 68 GTRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYA 127
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WWI+Q +R++L SRTIRLP
Sbjct: 128 YWWIRQTIRRALFLHSRTIRLP 149
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L++ E R+ L + P+ +WA A G+ ++R+L RL G
Sbjct: 73 LLKPEEEIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGR 132
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 133 AAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 192
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 193 WIRQAITRTIANDARTIRLPI 213
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ PT +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 82 LNLTVHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|302851352|ref|XP_002957200.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
gi|300257450|gb|EFJ41698.1| hypothetical protein VOLCADRAFT_109400 [Volvox carteri f.
nagariensis]
Length = 733
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/146 (41%), Positives = 96/146 (65%)
Query: 300 TTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR 359
++++ +L+ E++++ QD L LE ++ + PT + AAA G+D R
Sbjct: 408 SSANVNILSPEAELEVTEMCQDFLFLEKVKRQCEKTLHRKPTNDECAAAVGMDVMAYNMR 467
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
+ G+ K+ ++ SN RLV+++ K Y G GM+LQDLV EG +GL+RG E +DAS+GF+F
Sbjct: 468 YDAGLKAKELLLKSNYRLVMTVCKRYIGKGMHLQDLVSEGVKGLLRGVEMYDASRGFRFG 527
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPV 445
TYAHWWI+QAV +S+++ R +RLPV
Sbjct: 528 TYAHWWIRQAVSRSMAETGRAVRLPV 553
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L ++ P+ +WAA + E
Sbjct: 23 YLREIGRVP-LLTREQEIVYGKQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 82 VKQTVQQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L G + L++ PT +WA+ + EL++ ++ G
Sbjct: 38 LLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQGTR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 157
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+R IRLP+
Sbjct: 158 IRQAITRAIAQQARAIRLPI 177
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q +++L +E L++ PT +WA + + EL+R ++ G
Sbjct: 39 LLTREQEIIYGKQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ +RTIRLP+
Sbjct: 159 IRQAITRAIAQHARTIRLPI 178
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + +RE L+ PT A+WAAAA + + EL + G
Sbjct: 20 LLTHEQEVIYGKQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGER 79
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 80 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 139
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 140 IRQAITRAIAEKGRTIRLPI 159
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LL EE++L+ ++ L+ E R L E PT A+WA A + ++R+L RL G
Sbjct: 76 LLKPEEEIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGR 135
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 136 CAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYW 195
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 196 WIRQAITRTIANDARTIRLPI 216
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 101/157 (64%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D +D +R LLT +E+ ++ L L+ ++E L ++ G PTF++WA A
Sbjct: 6 DSTDLVRTYLKEIGRVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATA 65
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+ + +L+ + G K KM+ +N+RLV+++AK Y + L DL+QEG GL RG E
Sbjct: 66 SCLTDSQLKSSIAVGESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVE 125
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG++FSTYA+WWI+QA+ ++++++ RTIRLP+
Sbjct: 126 KFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPI 162
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L +E L++ G P+ ++WA + +L+ +++ G
Sbjct: 32 LLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKISTGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WAA + +
Sbjct: 23 YLREIGRVP-LLTREQEIVFGKQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETD 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 82 VKQTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|428204671|ref|YP_007083260.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427982103|gb|AFY79703.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 318
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 289 DYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
+++DP+R YLR LLT EE+ + +Q L+ LE L+E L ++ G PT ++WAA
Sbjct: 6 NFTDPVRAYLREIGRVP-LLTHEEEIHYAKRVQRLVVLENLKESLKQKLGKEPTDSEWAA 64
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
AA + + ELR + G K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG
Sbjct: 65 AAELTEAELRNCIAAGDAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTLGMQRGV 124
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG++FSTYA+WWI+QA+ ++++++SRTIRLP+
Sbjct: 125 EKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPI 162
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGI 364
LLTA EE+ L+ ++ L E ++ L + +P+ + A A G++ +R+L RL G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+W
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ SRTIRLP+
Sbjct: 184 WIRQAITRTIANDSRTIRLPI 204
>gi|186682180|ref|YP_001865376.1| SigH/RpoD family RNA polymerase sigma factor [Nostoc punctiforme
PCC 73102]
gi|186464632|gb|ACC80433.1| RNA polymerase, sigma 70 subunit SigH, RpoD family [Nostoc
punctiforme PCC 73102]
Length = 321
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMIT+N+RLV+SIAK YQ + L DL+QEG GL RG EKF+ + G++FSTYA+WW
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWW 153
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ Q R IRLP+
Sbjct: 154 IRQGITRAIAQQGRAIRLPI 173
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Query: 282 RPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
RPS + +Y D + + LL +EE++L+ ++ L ++ ++ L + G P
Sbjct: 66 RPSGYNKTEYDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVNEIQAALRQELGHQP 125
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
T A AA + +++L RL G + K KMI SN+RLV+SIAK Y G+ DL+QEG
Sbjct: 126 TKASIAAHLQITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGA 185
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 186 MGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 230
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT EE+ +Q L+ L+ R+ L E T +WA AA + ++
Sbjct: 23 YLREIGRVP-LLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQ 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L+R L G K KMI +N+RLV++IA+N + + DL+QEG GL RG EKFD +KG
Sbjct: 82 LQRDLQIGERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPTKG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + +L+E G PT A+WA A G+ + +L+R + G
Sbjct: 24 LLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQGER 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ + +E LSE+ PT +WA +++ L ++L+ G +
Sbjct: 37 LLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQGQI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ QSRTIRLP+
Sbjct: 157 IRQGITRAIAQQSRTIRLPI 176
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 2/151 (1%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQR 354
YLR LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV
Sbjct: 16 YLRDIGRVP-LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAA 74
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
+L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++
Sbjct: 75 QLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTR 134
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 135 GYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 165
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 97/141 (68%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLR-EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +Q+L+ LE L E+ +R + A AAGV +L+R+L G
Sbjct: 39 LLSHQQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGR 98
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 99 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 158
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 159 WIRQGITRAIAEKSRTIRLPI 179
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE+ +Q L L+ + L+E G PT +WA A + + EL+R + G
Sbjct: 24 LLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIREGER 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L+ +RE L+ + PT +WA AA +D EL + G
Sbjct: 23 LLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIADGEF 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 143 IRQAITRAIAEKARTIRLPI 162
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 79/104 (75%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA +G+D +EL++RL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 112 YTLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 171
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 215
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L ++ L++ P+ +WA AA +D +EL R L G +
Sbjct: 37 LLTHEQEIYYGKQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RL++S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ L +E L+ + PT +W + ++ L ++L+ G
Sbjct: 37 LLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQGQK 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ ++ DL+QEG GL RG EKFD +KG+KFSTY +WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYGYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++Q RTIRLP+
Sbjct: 157 IRQAITRAIAEQGRTIRLPI 176
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L + G + +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQGQR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EK+D +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 113/182 (62%), Gaps = 6/182 (3%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
A +V+ SG+ SRR++ ++ D + + LL+A EE+ L+ ++ L
Sbjct: 28 AHFSVIEDDSGTKSRRQKTKIE-----DSIGSFFKEMARYPLLSAEEEVNLAYAVKFLSD 82
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVD-QRELRRRLNYGILCKDKMITSNIRLVISIAK 383
E ++ L + +P+ + A A G++ +R+L RL G K KMI SN+RLV+SIAK
Sbjct: 83 CEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAKRKMIRSNLRLVVSIAK 142
Query: 384 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
Y G+ DL+QEG GL R AEKFD +KG+KFSTYA+WWI+QA+ +++++ SRTIRL
Sbjct: 143 RYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDSRTIRL 202
Query: 444 PV 445
P+
Sbjct: 203 PI 204
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V+ D +R LL+ +E+ +Q ++ L ++E L + T +WA
Sbjct: 18 VNTVDMVRTYLQEIGKVPLLSHEQEIVFGKQVQQMMSLYEVKENLEKNLEREVTLEEWAQ 77
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A E+++ ++ G K KMI +N+RLV++IAK YQ M DL+QEG GL RG
Sbjct: 78 KADKTPNEVKKIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGV 137
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 138 EKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPI 175
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 274 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 47 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 106
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+ G PT AQ AA + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 107 QLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 166
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 167 LDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 219
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L ++ L+ + P+ +WA + + EL R + G
Sbjct: 32 LLTHEQEIVYGKQVQKMMTLLEKKDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ +RTIRLP+
Sbjct: 159 IRQAITRAIAQHARTIRLPI 178
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q ++KL ++ L++ T +WAA + + EL R L+ G
Sbjct: 39 LLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELSRILHIGRR 98
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 158
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ +RTIRLP+
Sbjct: 159 IRQAITRAIAQHARTIRLPI 178
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E G P+ ++ AA + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +EVL+++ P ++WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMTLIDAKEVLAKKLHREPDMSEWADVVQQSETEVQQTVAQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE+ +Q ++ L ++E ++ PT +WA A G++ L + G
Sbjct: 41 LLSNEEEIVYGKQVQQMMLLFEVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTR 100
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+S+AK YQ + L DLVQEG GL R +KFD +KGFKFSTYA+WW
Sbjct: 101 AKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWW 160
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLPV
Sbjct: 161 IRQAITRAIAQQARTIRLPV 180
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-WAAAAGVDQRELRRRLNYGI 364
LL+ +E+ L +QDL++LE L L G + A AG+ +L+R+L G
Sbjct: 25 LLSHQQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGR 84
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+W
Sbjct: 85 RAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYW 144
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++++++SRTIRLP+
Sbjct: 145 WIRQGITRAIAEKSRTIRLPI 165
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L ++ PT +W A + E
Sbjct: 26 YLREIGRVP-LLTREQEIVYGKQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAE 84
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G
Sbjct: 85 LNDLIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPIRG 144
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 145 YKFSTYAYWWIRQAITRAIAQQARTIRLPI 174
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE++L+ ++ ++++E E SE PT A+ A A G + +LR++L
Sbjct: 169 LLQPTEEIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARA 228
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 229 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 288
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ +RTIRLP+
Sbjct: 289 IRQGITRTIANDARTIRLPI 308
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE++ +Q L+ +RE L+ + G PT +WA + +D +L + G +
Sbjct: 37 LLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ + +E L+++ PT +WA+ + + +
Sbjct: 24 YLREIGRVP-LLTREQEIIYGKQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEAD 82
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G
Sbjct: 83 LHDTVRRGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPTRG 142
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 143 YKFSTYAYWWIRQAITRAIAQQARTIRLPI 172
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L L+E L + G PT +W+ AA +D+ L + G +
Sbjct: 23 LLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAEGEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17134693|dbj|BAB77251.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 323
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ S +Q ++ L+ +E L ++ P+ + A + + E++ G
Sbjct: 27 LLTHEEEIVYSKQVQQMMVLQKKKETLKKQLNHEPSQKELAKYVQLSEIEVKDIFQQGTQ 86
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV++IAK YQ + L DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 87 AKQKMMVANLRLVVAIAKKYQRRNLELMDLIQEGSLGLERGVEKFDPTRGYKFSTYAYWW 146
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I QA+ +++S QSRTIRLP+
Sbjct: 147 ISQAMTRAISQQSRTIRLPI 166
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 32 LLTREQEIVYGKQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 152 IRQAITRAIAQQGRTIRLPI 171
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 274 SGSTSRRKRPS-VQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
SG RPS + ++ D + + LL +EE++L+ ++ L ++ L+ L
Sbjct: 59 SGDEMAAARPSGYNKTEHDDAVGAFFKEMARYPLLKPDEEVELARRVRFLEEVRDLQADL 118
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+ G PT AQ A + +++L RL G + K KMI SN+RLV+SIAK Y G+
Sbjct: 119 QLQIGQHPTKAQVAGQLEITEKQLENRLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPF 178
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 179 LDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 231
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L +E L + + E +PT + A A + + + RL Y
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+WW
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ +RTIRLP+
Sbjct: 213 IRQGITRTIANDARTIRLPI 232
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 103/163 (63%), Gaps = 4/163 (2%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
+V EVD YLR LL+ +E+ L +QDL++LE L L G
Sbjct: 26 AVAEVDLVRS--YLRDIGRVP-LLSHQQEITLGRQVQDLMELEALESELKSESGEEVVAP 82
Query: 344 Q-WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+ A AG+ +L+R+L G K++M+ +N+RLV+S+AK Y M L DL+QEG G
Sbjct: 83 EALAKKAGLSGVQLKRKLQAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIG 142
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
LVRG EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 143 LVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 185
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ P+ +WA + E+++ + G
Sbjct: 57 LLTREQEIVYGKQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKR 116
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 117 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 176
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q RTIRLP+
Sbjct: 177 IRQAITRAIAQQGRTIRLPI 196
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 97/140 (69%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ EE++ +Q L+ +RE L+ + G P+ +WA AA ++ +L + G +
Sbjct: 37 LLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIADGEV 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|411116559|ref|ZP_11389046.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410712662|gb|EKQ70163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 327
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
+LT +E+ +Q ++ L+ +E L+++ PT A+ A+ + + EL+ ++ G
Sbjct: 32 MLTHEQEIIYGKQVQQMMALQEKKEALAKKLNREPTDAELASHTNLSEDELKGIMHRGRR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 94/157 (59%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
D +D +R LLT +E+ +Q ++ +E L ++ PT +WA A
Sbjct: 22 DSTDTIRSYLHEIGRVPLLTHEQEIVFGKQVQQMMAFLEAKETLEKKLKREPTEEEWAEA 81
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
G +L+ + G K KMI +N+RLV++IAK YQ + DL+QEG GL RG E
Sbjct: 82 VGHSVGDLKNLVKIGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVE 141
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +G+KFSTYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 142 KFDPMRGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 178
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE L+ + G P +WAAA ++ L + G +
Sbjct: 54 LLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIADGEI 113
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 114 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 173
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 174 IRQAITRAIAEKARTIRLPI 193
>gi|427717250|ref|YP_007065244.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427349686|gb|AFY32410.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 318
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEAREYLAAQLGRQPTLEEWATTAKLESTELNDIIADGEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 143 IRQAITRAIAEKARTIRLPI 162
>gi|354566206|ref|ZP_08985379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353546714|gb|EHC16162.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 318
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L +RE+L+ + G PT +WA A ++ EL + + +
Sbjct: 23 LLTHEEEIFYGKQVQRATALHEVRELLATQLGREPTLEEWATATQLELTELNQAIADAEI 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L + G P+ Q A+ + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R +EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 210
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ + +Q ++ + +E L+E+ PT +WA + + L ++L+ G +
Sbjct: 37 LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ + DL+QEG GL RG EKFD + G+KFSTYA+WW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ QSRTIRLP+
Sbjct: 157 IRQGITRAIAQQSRTIRLPI 176
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E+ G S T + A +++++L RL G +
Sbjct: 98 LLKPDEEVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRV 157
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 158 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 217
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 218 IRQAITRAIANDARTIRLPI 237
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 89/140 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L +E L+++ PT +WA + EL + G
Sbjct: 32 LLTREQEIIYGKQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAELPETIKRGKR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G+KFSTYA+WW
Sbjct: 92 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 152 IRQAITRAIAQQARTIRLPI 171
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+Q +Q L +R+ L + G P+ +WA AA ++ EL + G
Sbjct: 37 LLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIADGET 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE++ +Q L +RE L+ + P +WAAAA ++ EL + G
Sbjct: 23 LLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAEGET 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 143 IRQAITRAIAEKARTIRLPI 162
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ +Q ++ L +E L+++ PT +WA + + L+++L G
Sbjct: 39 LLSHEQEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQ 98
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+++AK YQ ++ DL+QEG GL RG EKFD ++GF+FSTYA+WW
Sbjct: 99 AKQKMIEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWW 158
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q V ++++ QSRTIRLP+
Sbjct: 159 IRQGVTRAIAQQSRTIRLPI 178
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGI 364
LLT +E+ +Q L L+ +RE L G PT +WA A+ + D EL + + G
Sbjct: 23 LLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIAAGE 82
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
L K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+W
Sbjct: 83 LAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 142
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++++ RTIRLP+
Sbjct: 143 WIRQAITRAIAEKGRTIRLPI 163
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LL+ +E+ +Q ++ L +E L + P+ ++WAA + E
Sbjct: 23 YLREIGRVP-LLSREQEIIYGKQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G
Sbjct: 82 LNHLMVQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L ++ L+ L+ + G PT + A+ + +++L RL G +
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 200 IRQAITRAIANDARTIRLPI 219
>gi|409991559|ref|ZP_11274809.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
gi|409937568|gb|EKN78982.1| RNA polymerase sigma factor SigD [Arthrospira platensis str.
Paraca]
Length = 319
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 24 LLTHEQEILYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q L RE L+ + G PT +WA A ++ EL + G +
Sbjct: 37 LLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEI 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++++RTIRLP+
Sbjct: 157 IRQAITRAIAEKARTIRLPI 176
>gi|288923254|ref|ZP_06417393.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288345398|gb|EFC79788.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 400
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQWA 346
SDP+R T RLLTA EE+ L+ I+ L KL R++ SP Q
Sbjct: 101 SDPVRMYLKTIGRVRLLTAAEEVDLAKRIEAGLFASEKLAATRKI-------SPQLRQDL 153
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
A D G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 154 QAVEQD----------GQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIRA 203
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QAV ++L+DQ RTIR+PV
Sbjct: 204 VEKFDYTKGYKFSTYATWWIRQAVTRALADQGRTIRIPV 242
>gi|427418169|ref|ZP_18908352.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760882|gb|EKV01735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 319
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/147 (40%), Positives = 96/147 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ ++ L+ +E +++ L G PT W+ AA + EL+ + G
Sbjct: 23 LLTPEQEVTFGNAVRTLMTIETIKDGLVGSLGHEPTLEDWSKAANLTIEELKMAVEKGQR 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y + + DL+QEG GL RG EKFD SKG++FSTYA+WW
Sbjct: 83 AKRQMVEANLRLVVSVAKKYLKRNVEILDLIQEGTIGLQRGVEKFDPSKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPVISHGRGN 452
I+QA+ ++++++SRT+RLP+ H + N
Sbjct: 143 IRQAMTRAIAEKSRTMRLPIHIHEKIN 169
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 88/140 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL EE+ +Q + L+ L++ L PT +WA A + +L++ L G
Sbjct: 23 LLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKLGHK 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG++FSTYA+WW
Sbjct: 83 ANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++Q RTIRLP+
Sbjct: 143 IRQAMTRAIAEQERTIRLPI 162
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 114/203 (56%), Gaps = 29/203 (14%)
Query: 272 VKSGSTSRRKRPSVQEVDYSDPL----RYLRATTSSSRLLTANEEMQLSA---GIQDLLK 324
+++GS + R +Q++ D L L A R + EE L+ IQ LL+
Sbjct: 1 MRTGSGNDLLRLYLQDIGRVDLLTNEEEVLLARQVQQREVLLAEERALAGEHPTIQRLLE 60
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVDQ----------------------RELRRRLNY 362
LE L++ + PT +WA AAG+ Q +EL++RL
Sbjct: 61 LEQLQQREANHVCHWPTKKEWAEAAGLTQEQLTTVLREGYGIWSDHSALESKELQKRLRE 120
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G +D+MI +N+RLV+++AK YQ G+ L DLVQEG GL R EKFD ++GF+FSTYA
Sbjct: 121 GRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYA 180
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
+WWI+Q + ++++ QSRTIRLPV
Sbjct: 181 YWWIRQGITRAIATQSRTIRLPV 203
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ + L+ L+E L+ PT +WA A ++ ++L + G +
Sbjct: 27 LLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEKGEV 86
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD SKG++FSTYA+WW
Sbjct: 87 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWW 146
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 147 IRQAITRAIAEKGRTIRLPI 166
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + +
Sbjct: 23 YLREIGRVP-LLTREQEIVFGKQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETD 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q + L+ R L P+ +WA AAG+ EL + ++ G L
Sbjct: 23 LLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDAGDL 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD KG++FSTYA+WW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++SRTIRLP+
Sbjct: 143 IRQAITRAIAEKSRTIRLPI 162
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 97/157 (61%)
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
+Y D + + LL +EE++L+ ++ L ++ + E+ G P A A
Sbjct: 63 EYDDAVGAFFKEMARYPLLKPDEEVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKE 122
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
G+ Q++L RL G + K KMI SN+RLV+SIAK Y G+ DL+QEG GL R E
Sbjct: 123 MGIVQKQLEHRLYQGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATE 182
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD KG+KFSTYA+WWI+QA+ +++++ +RTIRLP+
Sbjct: 183 KFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPI 219
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLT +E+ +Q ++ L +E L+++ P+ +WA + E
Sbjct: 23 YLREIGRVP-LLTREQEIIFGKQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETE 81
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
+++ + G K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +G
Sbjct: 82 VKQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRG 141
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA+WWI+QA+ ++++ Q RTIRLP+
Sbjct: 142 YKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQ 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L++ L G KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++FSTYA+WWI+QA+ +++++Q RTIRLP+
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPI 162
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 98/140 (70%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+ L E+ G S + ++ A+ +++++L RL G +
Sbjct: 101 LLKPDEEVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRV 160
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 161 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 220
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 221 IRQAITRAIANDARTIRLPI 240
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S LL +E+ +Q L L+ +++ L + PT +WA A V +
Sbjct: 14 YLREI-SRFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQ 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L++ L G KM+ SN+RLV+SIAK Y A + DL+QEG GL RG EKFD KG
Sbjct: 73 LQKELKLGHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKG 132
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++FSTYA+WWI+QA+ +++++Q RTIRLP+
Sbjct: 133 YRFSTYAYWWIRQAMTRAIAEQERTIRLPI 162
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+++E+ +Q ++ +E ++ LS++ PT A+ A + E+ + L G
Sbjct: 14 LLTSDQEITYGRQVQQMIAIEEHKQQLSQQLHREPTLAELADFVNKSETEVNQILQQGQR 73
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMIT+N+RLV+S+AK YQ + DLVQEG GL RG EKFD ++G+K STYA+WW
Sbjct: 74 AKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEGAIGLQRGIEKFDPNRGYKLSTYAYWW 133
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I QA+ ++++++SRT+RLPV
Sbjct: 134 ISQAITRAIAEKSRTVRLPV 153
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 113/200 (56%), Gaps = 21/200 (10%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYS----------DPLR-YLRATTSSSRLLTANEEM 313
A+ +V V+S + + ++E+D S DP+R YLR LLTA +E+
Sbjct: 94 ASIDVFDVESEKDAAKLTQQIEEIDLSKISLDKTVSSDPVRMYLREIGKVD-LLTAKQEI 152
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK---- 369
+L A + K + L++ G PT + A G+D++ ++ DK
Sbjct: 153 EL-AQCAEAFKFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKDWNDKQGEA 211
Query: 370 ----MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
+I +N+RLV+SIAK Y G G+ DL+QEG GL+R EKFD +GFKFSTYA WW
Sbjct: 212 AERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFKFSTYATWW 271
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQSRTIR+PV
Sbjct: 272 IRQAITRALADQSRTIRIPV 291
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L + L+ G PT +WA AAG+ + EL+R ++ G
Sbjct: 24 LLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHAGER 83
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 84 AKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 143
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 144 IRQAITRAIAEKGRTIRLPI 163
>gi|428308709|ref|YP_007119686.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428250321|gb|AFZ16280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 327
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 89/140 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L + L+E+ PT +W D+ L + ++ G
Sbjct: 32 LLTHEQEIVYGKQVQQMMLLMDAKAALAEKLQREPTTKEWTMHVKHDEATLNKIVSQGTW 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD +KG+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+R IRLP+
Sbjct: 152 IRQAITRAIAQQARAIRLPI 171
>gi|376005594|ref|ZP_09783057.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375326028|emb|CCE18810.1| group 2 RNA polymerase sigma factor SigD (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 331
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 156 IRQAITRAIAEKGRTIRLPI 175
>gi|209524631|ref|ZP_03273179.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064274|ref|ZP_17053064.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209495089|gb|EDZ95396.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406713517|gb|EKD08685.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 331
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ G PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLGYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 156 IRQAITRAIAEKGRTIRLPI 175
>gi|256377300|ref|YP_003100960.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255921603|gb|ACU37114.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 349
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 106/176 (60%), Gaps = 17/176 (9%)
Query: 271 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 32 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 88
Query: 331 VL-SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + R P ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 89 LPPAARGSRRPI-------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 135
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLPV
Sbjct: 136 MALLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPV 191
>gi|449468291|ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
gi|449514942|ref|XP_004164521.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
Length = 508
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 112/199 (56%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
+ RR + K + + + S++ RP++ + L+ S LL+ E ++
Sbjct: 154 RQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVR 213
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L LE + L +R G P+ Q A + + + ELR R+ L ++K+ SN
Sbjct: 214 LSKKIKVGLTLEERKTRLKQRLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSN 273
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGFK STY +WWI+Q V ++L
Sbjct: 274 VRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 333
Query: 435 SDQSRTIRLPVISHGRGNL 453
+ SRT+RLP H R L
Sbjct: 334 VENSRTLRLPTHLHERLGL 352
>gi|21449377|gb|AAM54109.1|AF453501_35 RNA polymerase sigma factor [Actinosynnema pretiosum subsp.
auranticum]
Length = 348
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 106/176 (60%), Gaps = 17/176 (9%)
Query: 271 SVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLRE 330
+K +T RR + D + YL+A RLLTA++E++L+ ++ L E L +
Sbjct: 31 DIKLAATLRRDAEAANAADSTRA--YLKAI-GRVRLLTADQEVELARRVEAGLYAEHLLD 87
Query: 331 VL-SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ + R P ELRR + G KD ++ +N+RLV+SIAK Y G G
Sbjct: 88 LPPAARGSRRPV-------------ELRRVVRDGQRAKDHLLEANLRLVVSIAKRYTGKG 134
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L D++QEG GLVR EKFD +KGFKFSTYA WWI+QA+ ++L+DQSRTIRLPV
Sbjct: 135 MALLDVIQEGNLGLVRAVEKFDYAKGFKFSTYATWWIRQAITRALADQSRTIRLPV 190
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++KL +E L E G T +W AG+ Q EL++ + G
Sbjct: 32 LLTHEQEIILGKQVQKMMKLIEQKEELEEELGREATDEEWTQKAGISQEELQKAMREGNR 91
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+R IRLP+
Sbjct: 152 IRQAITRAIAQQARAIRLPI 171
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L+++E + L ++ P + A G+ ++L +L G +
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 221
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 222 IRQAITRAIANDARTIRLPI 241
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LL+ EE++ +Q + L +RE L+ + G PT +WA A+ ++ E
Sbjct: 14 YLREIGKVP-LLSHEEEIKFGKQVQRAVVLNEVRESLALKLGHEPTLEEWAIASELEPLE 72
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + + K +M+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG
Sbjct: 73 LNQAIADADEAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKG 132
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++FSTYA+WWI+QA+ ++++++ RTIRLP+
Sbjct: 133 YRFSTYAYWWIRQAITRAIAEKGRTIRLPI 162
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 96/165 (58%), Gaps = 24/165 (14%)
Query: 305 RLLTANEEMQLSAG--IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL-- 360
RLL +E + G IQ +++ R+ L+ G P+ +WA AAGVD EL+ L
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 361 --------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 254
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 17/158 (10%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA+EE M++ AG + KLE + +
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEATQKLEDFED-------------EKIE 198
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+ +QR L R G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 199 LSRAEQRRLMRIEQVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 296
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q ++ L + L ++ + +W+ +A + + EL R L G
Sbjct: 33 LLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKLGQR 92
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD KG+KFSTYA+WW
Sbjct: 93 AKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYAYWW 152
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 153 IRQAITRAIAQQARTIRLPI 172
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 10/156 (6%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R YLR LL EE+ L+ +Q+ E+L +R G T WA
Sbjct: 19 SDPIRLYLREIGRVD-LLRQEEEILLARLVQER------EELLRQRGDGELT--AWAGRC 69
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
GV +LR+ L+ G K++M+ +N+RLV+++AK YQ G++L DL+QEG GL R E+
Sbjct: 70 GVPPADLRQALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVER 129
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+D +GF+FSTYA+WWI+Q + ++L+ QSRTIRLPV
Sbjct: 130 YDPRRGFRFSTYAYWWIRQGITRALASQSRTIRLPV 165
>gi|253761922|ref|XP_002489335.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
gi|241946983|gb|EES20128.1| hypothetical protein SORBIDRAFT_0010s016080 [Sorghum bicolor]
Length = 238
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 69/75 (92%)
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
M+TSN+RLVISIA+ ++G GM+L DL+QEG +GL+RGAEKFDASKGF+FSTY+HWWIKQA
Sbjct: 1 MVTSNVRLVISIAREFEGPGMDLYDLIQEGMQGLIRGAEKFDASKGFRFSTYSHWWIKQA 60
Query: 430 VRKSLSDQSRTIRLP 444
+RKS+S+QS+ RLP
Sbjct: 61 MRKSVSEQSQIFRLP 75
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCG------GSPTFAQWAAAAGVDQRELRRR 359
LL+ +E+ L +Q ++ L ++E L+ + + A WAAAA + + EL
Sbjct: 88 LLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESELDHH 147
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
+ G K KMI +N+RLV+++AK YQ + DL+QEG GL RG EKFD KG+KFS
Sbjct: 148 MRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFS 207
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPV 445
TYA+WWI+QA+ ++++ Q+RTIRLP+
Sbjct: 208 TYAYWWIRQAITRAIAQQARTIRLPI 233
>gi|352095714|ref|ZP_08956728.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351678856|gb|EHA62001.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 355
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 77/104 (74%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA D R+L+RRL G +D+MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 91 YQTWADLITSDSRDLQRRLREGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLVQEGTL 150
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD+++GF+FSTY++WWI+Q + ++++ QSRTIRLPV
Sbjct: 151 GLERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPV 194
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR T RL TA EE+ LS I+ L+ R+ G T QWA + +
Sbjct: 258 YLRDITKIDRL-TAEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWAGHMHMAVGD 316
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L +L+ L +D+M+ +N+RLV+S+ K Y G+ + DL+QEG GL++G EKFD ++G
Sbjct: 317 LDAQLHEAELARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQEGSIGLLKGVEKFDHTRG 376
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
+K STY HWWI+Q V ++++D SRT+RLPV H
Sbjct: 377 YKLSTYVHWWIRQGVTRAIADHSRTVRLPVHVH 409
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 95/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A+EE++L+ ++ L +++ L+ L G P+ + A+ + +++L RL G +
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|427706144|ref|YP_007048521.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358649|gb|AFY41371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 316
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT+++E+ +Q ++ +EG ++ LS++ P A+ A + E+ + L G
Sbjct: 21 LLTSDQEITYGRQVQQMIAIEGQKKQLSQQLHREPKLAELADFVNKSETEVTQILQLGQR 80
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+T+N+RLV+SIAK YQ + L DL+QEG GL RG EKFD ++G+K STYA+WW
Sbjct: 81 AKQKMVTANLRLVVSIAKKYQRRNLELLDLIQEGAIGLQRGIEKFDPNRGYKLSTYAYWW 140
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I QA+ ++++++SR +RLP+
Sbjct: 141 ISQAITRAIAEKSRAVRLPI 160
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 17/158 (10%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA+EE M++ AG KLE + L E
Sbjct: 152 DPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRA--------- 202
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+QR L R + G+ K ++I++N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 203 ----EQRRLMRIESVGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 258
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 259 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 296
>gi|452821128|gb|EME28162.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 670
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
L+ EE + I L +LE +RE L + G P +WA A + ELR +L G
Sbjct: 356 LSLVEEKVICEEIARLTRLEAVREDLRRKMGRLPRENEWAWEANLSVSELRGKLIKGRRA 415
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K++M+ +N+RLVI AK Y+ G+ QDLVQEG GL+RG EK+DA +GF+FSTYA WWI
Sbjct: 416 KNRMVAANLRLVICFAKRYRNRGVAFQDLVQEGSIGLIRGVEKYDAHRGFRFSTYASWWI 475
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + K+L + SR RLPV
Sbjct: 476 RQGIHKALLECSRMFRLPV 494
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++E L+ L++ G P A A A + + ++R+ L G
Sbjct: 94 LLKPDEEIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRA 153
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 154 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 213
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++ +RTIRLP+
Sbjct: 214 IRQGITRTIANDARTIRLPI 233
>gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
gi|28476507|gb|AAO44596.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist]
Length = 387
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 99/156 (63%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEK 193
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 194 FDYVKGFKFSTYATWWIRQAITRAMADQARTIRIPV 229
>gi|28572422|ref|NP_789202.1| RNA polymerase sigma factor [Tropheryma whipplei TW08/27]
gi|28410553|emb|CAD66939.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei
TW08/27]
Length = 387
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 99/156 (63%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LLTA+EE+ L+ I+ L E E LSE +P
Sbjct: 88 ADPVKDYLKQIGKVS-LLTADEEVSLAKRIEAGLFAE---EKLSESGDLAPKL------- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+RELR + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 137 ---KRELRWVVRDGQRAKDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEK 193
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 194 FDYVKGFKFSTYATWWIRQAITRAMADQARTIRIPV 229
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LLTA EE LS +Q L+ +E + ++R G T +WAA G R+ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ +M+ SN RLV +A+ Y G++ QDL+ EG GL RG EKFDA +GFKFSTYAHW
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 425 WIKQAVRKSLSDQSRTIRLPVISH 448
W++QA+ +++S+Q R +RLPV H
Sbjct: 129 WVRQAITRAISEQGRVVRLPVHLH 152
>gi|113953359|ref|YP_732042.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
gi|113880710|gb|ABI45668.1| RNA polymerase sigma-70 factor family protein [Synechococcus sp.
CC9311]
Length = 376
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 78/109 (71%)
Query: 337 GGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLV 396
G + + WA D REL+ RL G +D+MI +N+RLV+++AK YQ GM L DLV
Sbjct: 107 GLTQGYETWANLISTDSRELQLRLRRGRKARDRMIQANLRLVVAVAKKYQHRGMELLDLV 166
Query: 397 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
QEG GL R EKFD+++GF+FSTY++WWI+Q + ++++ QSRTIRLPV
Sbjct: 167 QEGTLGLERAVEKFDSTRGFRFSTYSYWWIRQGITRAIATQSRTIRLPV 215
>gi|328955627|ref|YP_004372960.1| RNA polymerase sigma-70 subunit RpoD [Coriobacterium glomerans PW2]
gi|328455951|gb|AEB07145.1| RNA polymerase, sigma 70 subunit, RpoD [Coriobacterium glomerans
PW2]
Length = 442
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 96/158 (60%), Gaps = 17/158 (10%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA +E M++ AG++ KLE S+R + T A
Sbjct: 139 DPVRMYLKEIGKVDLLTAADEVDLAMKIEAGLEAAEKLES-----SDRGEIALTRA---- 189
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
D R L R G+ K +I++N+RLV+SIAK Y G GM+ DL+QEG GL+R
Sbjct: 190 ----DMRRLSRIEQVGLEAKQALISANLRLVVSIAKRYVGRGMHFLDLIQEGNLGLIRAV 245
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 246 EKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 283
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L +++ L+E LS G + Q A + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRV 138
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|33864481|ref|NP_896041.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
gi|33641261|emb|CAE22391.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
Length = 376
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 76/104 (73%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP+
Sbjct: 172 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPM 215
>gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme PCC 73102]
Length = 321
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q L+ + E L+ +PT ++WA + ++EL ++LN G
Sbjct: 34 LLTQEQEIIFAQEVQQLMTILAESEKLTIELKRTPTLSEWANQMQLSEQELLQQLNQGKK 93
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMIT+N+RLV+SIAK YQ + L DL+QEG GL RG EKF+ + G++ +TYA+WW
Sbjct: 94 AKHKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRKTTYAYWW 153
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ Q R IRLP+
Sbjct: 154 IRQGITRAIAQQGRAIRLPI 173
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 99/173 (57%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I L++ +E L+ G P+ +WA+ AGVD
Sbjct: 115 RYLRL-----RVVLANAAKQGDEIIAPYLRIIEAQERLASELGHRPSMERWASTAGVDVF 169
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL++ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 ELKQILAKGKRRWAEVAKLTVEELEQMQSSGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 230 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 282
>gi|124024644|ref|YP_001018951.1| type II alternative RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
gi|123964930|gb|ABM79686.1| Putative type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9303]
Length = 376
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 76/104 (73%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ W A G+D EL+R L G KD+MI +N+RLV+++AK YQ G+ L DLVQEG
Sbjct: 112 YKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVAVAKKYQQRGIELLDLVQEGTL 171
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLP+
Sbjct: 172 GLERAVEKFDPARGFRFSTYAYWWIRQGITRAIATQSRTIRLPM 215
>gi|139436983|ref|ZP_01771143.1| Hypothetical protein COLAER_00117 [Collinsella aerofaciens ATCC
25986]
gi|133776630|gb|EBA40450.1| RNA polymerase sigma factor RpoD [Collinsella aerofaciens ATCC
25986]
Length = 454
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 29/164 (17%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA+EE M++ AG++ KLE AA
Sbjct: 151 DPVRMYLKEIGKVDLLTASEEVDLAMKIEAGLEATEKLE-------------------AA 191
Query: 348 AAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
AG + R L R N G+ K +I++N+RLV+SIAK Y G GM DL+QEG
Sbjct: 192 DAGELELTRAEIRRLTRIENVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNL 251
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 252 GLIRAVEKFDYQKGFKFSTYATWWIRQAITRAIADQARTIRIPV 295
>gi|427701550|ref|YP_007044772.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344718|gb|AFY27431.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 335
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 108/160 (67%), Gaps = 3/160 (1%)
Query: 288 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS-PTFAQW 345
V D LR YLR LL+ +E+ L +Q+L+ LE LRE L+ R GG P+
Sbjct: 21 VPTGDSLRSYLRDIGRVP-LLSHEQEITLGRQVQELMVLEELREELTLRSGGEEPSPELL 79
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
AA AG+ LR+RL+ G K++M+ +N+RLV+S+AK Y M L DL+QEG GLVR
Sbjct: 80 AAEAGLTPALLRKRLHAGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVR 139
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G EKFD ++G+KFSTYA+WWI+Q + ++++++SRTIRLP+
Sbjct: 140 GVEKFDPTRGYKFSTYAYWWIRQGITRAIAEKSRTIRLPI 179
>gi|291565943|dbj|BAI88215.1| group 2 RNA polymerase sigma factor SigD [Arthrospira platensis
NIES-39]
Length = 331
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L+ R L+++ PT AQWA + +L+ L+ G L
Sbjct: 36 LLTHEQEIVYGKQVQQATLLQEKRNELAKQLAYEPTEAQWAELVNLSVAQLQHILHQGQL 95
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 96 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 155
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 156 IRQAITRAIAEKGRTIRLPI 175
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 98/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + AN Q A + L+L ++E L+ G P+ +WAA AGV
Sbjct: 89 RYLRMRT-----VLANAAKQGDAVVSPYLRLIEVQERLASELGHRPSLERWAATAGVQLS 143
Query: 355 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLSEGKRRWAEIAKITVEELEQIQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor [Cyanidium caldarium]
Length = 589
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 103/190 (54%), Gaps = 10/190 (5%)
Query: 262 AEKAAANVMSVKS------GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQL 315
A K A +M G+ R+R S +S YL RL + EE ++
Sbjct: 225 AAKTVARIMDYSDSYWSDHGNKKNRRRRSTNSDSFST---YLTEIGKVHRL-SLEEEKEI 280
Query: 316 SAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375
I LE +RE L R G P +WA + ELR +L G K++M+ +N+
Sbjct: 281 CQEIAFFTHLEAVREDLRRRIGRLPREHEWAMETNMSVSELRGKLIKGRRAKNRMVAANL 340
Query: 376 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435
RLVI AK ++ G+ QDLVQEG GL+RG EK+DA++GF+FSTYA WWI+Q + K+L
Sbjct: 341 RLVICFAKRFRNRGVAFQDLVQEGSIGLIRGVEKYDANRGFRFSTYASWWIRQGIHKALL 400
Query: 436 DQSRTIRLPV 445
+ S+ RLPV
Sbjct: 401 ECSKMFRLPV 410
>gi|186687052|ref|YP_001870195.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186469355|gb|ACC85154.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 316
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT ++E+ + +Q ++ +E R L+ + PT + A + G ++ EL+ + G
Sbjct: 21 LLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEAELQSVIQQGQK 80
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+T+N+RLV+S+AK YQ ++ DL+QEG GL RG EKFD +KG+K STY +WW
Sbjct: 81 AKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFDPNKGYKLSTYVYWW 140
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I Q++ ++++D+SRTIRLP+
Sbjct: 141 ITQSITRAVADKSRTIRLPI 160
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 104/192 (54%), Gaps = 19/192 (9%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEE----M 313
+AAE A N+ V + S+ R+R + V DP+R LLTA EE M
Sbjct: 55 KAAEDAEVNLPKVTTRSSKVRRRSADTSVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 114
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
++ AG+ +LE E E G+D K ++I +
Sbjct: 115 KIEAGVAATAELEKAEEEGIELERRERRRLTRVEQVGID-------------AKQQLIEA 161
Query: 374 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 433
N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++
Sbjct: 162 NLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRA 221
Query: 434 LSDQSRTIRLPV 445
++DQSRTIR+PV
Sbjct: 222 IADQSRTIRIPV 233
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 101/183 (55%), Gaps = 43/183 (23%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGG---------------------SPTFAQ 344
LL +EE+ + +Q ++L LR+ +E+ GG P+ +
Sbjct: 89 LLERDEEVAEAQRVQQHMELLALRDRAAEKTGGLLATYVHLLNTRARLTAQLGHRPSLER 148
Query: 345 WAAAAGVDQRELR------RRL----------------NYGILCKDKMITSNIRLVISIA 382
WA A+GVD +L+ +RL N G K+ MI +N+RLV+S+A
Sbjct: 149 WAKASGVDMPDLKPTLAQGKRLWAEIAGMSVEEIVEIQNEGTRAKEHMIKANLRLVVSVA 208
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
K YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIR
Sbjct: 209 KKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIR 268
Query: 443 LPV 445
LPV
Sbjct: 269 LPV 271
>gi|3077738|dbj|BAA25787.1| SigB [Cyanidium caldarium]
Length = 424
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 30/178 (16%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSMATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQ-------------GAGMN----------- 391
+R+R+ G +++++ SN+RLV++IA Y+ GM+
Sbjct: 133 VRKRIERGRRARERLVASNLRLVLAIANRYKLRAVVCSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 392 -----LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
L DL+QEG GL+R AEKFD SKGFKFSTYA WWI+QA+++ +S+ SRTIRLP
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLP 250
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT EE+ +Q +++ L+E L E+ + T +WA V ++ L++ + G
Sbjct: 41 LLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQR 100
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV++IAK YQ M DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 101 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 160
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++ Q+RTIRLP+
Sbjct: 161 IRQAITRAIAQQARTIRLPI 180
>gi|72161271|ref|YP_288928.1| sigma-70 factor [Thermobifida fusca YX]
gi|71915003|gb|AAZ54905.1| sigma-70 factor [Thermobifida fusca YX]
Length = 388
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 8/150 (5%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ I+ + L +++ + R G P AQ++ D E
Sbjct: 90 YLREIGRVP-LLTAEEEVELAKAIE--IGLYAEQKLRAARTG--PVPAQYSPEWFEDLNE 144
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L R G L K ++I SN+RLV+S+AK Y G G+ L DL+QEG GL+R EKFD ++G
Sbjct: 145 LVRE---GKLAKRRLIESNLRLVVSVAKRYLGRGLALLDLIQEGNLGLIRAVEKFDYTRG 201
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 202 YKFSTYATWWIRQAITRAIADQARTIRVPV 231
>gi|6682869|dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 93/151 (61%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
S LLT E +QLS IQ L LE + L ER G P+ Q A + + + +L+ L
Sbjct: 202 SEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPSDDQLAVSLKMSRTDLQSTLIE 261
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
L ++++ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD SKG+K STY
Sbjct: 262 CSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLIGLLRGIEKFDPSKGYKISTYV 321
Query: 423 HWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
+WWI+Q V ++L + SRT+RLP H R +L
Sbjct: 322 YWWIRQGVSRALVENSRTLRLPTYLHERLSL 352
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 18/157 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + AT LLT EE++L +Q ++ L +G RE G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMSLTEDGSREF----EDGELTTAQ---- 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R E
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE 119
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 120 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 156
>gi|356531599|ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/151 (45%), Positives = 94/151 (62%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
S LL+ E + LS I+ L LE + L ER G P+ Q A + + + ELR R+
Sbjct: 197 SEELLSHAEVVNLSERIKVGLSLEEHKSRLKERLGCEPSDDQMAISLKISRTELRARMIE 256
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGFK STY
Sbjct: 257 CTLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYV 316
Query: 423 HWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
+WWI+Q V ++L + SRT+RLP H R +L
Sbjct: 317 YWWIRQGVSRALVENSRTLRLPAHLHERLSL 347
>gi|78185801|ref|YP_378235.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9902]
gi|78170095|gb|ABB27192.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9902]
Length = 377
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 75/104 (72%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA A +D +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQEG
Sbjct: 113 YEAWAEKAAIDAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTL 172
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 173 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPV 216
>gi|297737220|emb|CBI26421.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 123/225 (54%), Gaps = 16/225 (7%)
Query: 235 LLEEQVSQSIAVRSRRQ------TERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEV 288
+LE+Q + S R +R+ T + RR ++ VM+ KS S R +
Sbjct: 185 MLEKQWNLSFKARQKRREVTCSGTSARQRRISGRKR----VMNEKSKSRVR------AAL 234
Query: 289 DYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
+ L+ S LLT + + LS I+ L LE + L ER G PT Q AA+
Sbjct: 235 GVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAAS 294
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+ + EL+ +L L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG E
Sbjct: 295 LRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIE 354
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
KFD+SKGFK STY +WWI+Q V ++L + SRT+RLP H R +L
Sbjct: 355 KFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSL 399
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 18/157 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + AT LLT EE++L +Q ++ +G RE+ G T AQ
Sbjct: 16 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMAFTEDGSREI----EDGELTTAQ---- 67
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R E
Sbjct: 68 --------RRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE 119
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 120 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 156
>gi|113954655|ref|YP_729975.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113882006|gb|ABI46964.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 313
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLTA EE++L +Q ++L ++ SP ++++
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMEL-------TQDGSVSPDSEEFSSKD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 69 ------RRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|282897491|ref|ZP_06305492.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281197586|gb|EFA72481.1| sigC (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 429
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 22/163 (13%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 361
RLL AN Q A I L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 107 RLLLANAAKQGDALIVLYLQLIEVQERLVSELGHRPSLERWASTAGIKLMDLKPTLSEGK 166
Query: 362 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG G
Sbjct: 167 RRWGEIAQLTVEELDEIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG 226
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 227 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 269
>gi|2706544|emb|CAA75859.1| Sig1 [Sinapis alba]
Length = 481
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 117/202 (57%), Gaps = 12/202 (5%)
Query: 263 EKAAANVMSVKSGSTSRRKR---------PSVQEVDYSDPL--RYLRATTSSSRLLTANE 311
EK V SG ++R++R +V EV++ + L Y++ S +L+ E
Sbjct: 125 EKTRKKVPVTCSGISARQRRIGAKKKTNVKAVSEVNFQNNLVKGYVKGVISD-HVLSHAE 183
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
++LS I+ L+L+ + L++R G P+ Q A + + + EL+ L L ++K+
Sbjct: 184 VVRLSKKIKSGLRLDEHKSRLTDRLGCEPSDEQLAMSLKISRAELQAWLMECHLAREKLA 243
Query: 372 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 431
SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V
Sbjct: 244 MSNVRLVMSIAQRYDNMGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVS 303
Query: 432 KSLSDQSRTIRLPVISHGRGNL 453
++L D SRT+RLP H R L
Sbjct: 304 RALVDNSRTLRLPTHLHERLGL 325
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I +L ++E LS G P+ +WA AG+D
Sbjct: 90 RYLRL-----RIVLANAAKQGDTVIVPYQRLIEVQERLSSELGHRPSLERWAKTAGIDLA 144
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 145 DLKPTLLEGKRRWAEIAKLKVEELENVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 204
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 205 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 257
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR-------------------- 358
+Q ++ LE +R+ L+ R P+ QWA A + ELRR
Sbjct: 89 LQAMVDLEVVRQRLASRLTHQPSHGQWAEACDLPVAELRRLLQEGHRTWAACLDLSLSDL 148
Query: 359 --RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
RL G +D+MI +N+RLV+++AK YQ G+ L DLVQEG GL R EK+D ++GF
Sbjct: 149 QQRLLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLERAVEKYDPTRGF 208
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q V ++++ QSRTIRLPV
Sbjct: 209 RFSTYAYWWIRQGVTRAIATQSRTIRLPV 237
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 93/150 (62%), Gaps = 25/150 (16%)
Query: 321 DLLKLEGLREV-LSE--RCGGSPTFAQWAAAAGVDQRELR-------------------- 357
D+ +LE L E L E + G P+ +QWA A G+ ELR
Sbjct: 61 DVARLEALEEQRLRETSKLGHQPSQSQWAQACGLSAGELRAQVQAGNKAWAELLDMSPGD 120
Query: 358 --RRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
R+L +G K++MI +N+RLV+++AK YQ GM L DLVQEG GL RG EK+D ++G
Sbjct: 121 LQRQLLHGRRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEGTLGLERGVEKYDPTRG 180
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 181 FRFSTYAYWWIRQGITRAIATQSRTIRLPV 210
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 94/140 (67%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + + E G P+ + +A + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 169 IRQGITRAIAEKSRAIRLPI 188
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 98/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R L + + + I+ + L +E L+ G P+ +WAA+AG+
Sbjct: 89 RYLRM-----RALCVSHAAKDDSIIKTYITLIEAQERLTSELGHRPSLERWAASAGISVM 143
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL+ L N GI K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKPALAVGKRRWAEIAKITVEELEQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 256
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 44/199 (22%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIARFVHLIEVR 122
Query: 330 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 366
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVETIERIQAEGVEA 182
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 242
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + ++++ QSRTIRLPV
Sbjct: 243 RQGITRAIATQSRTIRLPV 261
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 43/198 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 52 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 111
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ EL++ + G C K
Sbjct: 112 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 171
Query: 368 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 427
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 172 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 231
Query: 428 QAVRKSLSDQSRTIRLPV 445
Q + ++++ QSRTIRLPV
Sbjct: 232 QGITRAIATQSRTIRLPV 249
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 44/199 (22%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q +KL EGL R
Sbjct: 63 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIKLLELRNTVASQEEGLIGRFVHLIEVR 122
Query: 330 EVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYG----------------------ILC 366
+ L+ + G P+ +WA AGV D EL+R ++ G +
Sbjct: 123 DRLAAQLGHKPSLERWALTAGVGDVPELKRIMSEGKRQWAELAEMTVEAIERVQAEGVEA 182
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 183 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 242
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + ++++ QSRTIRLPV
Sbjct: 243 RQGITRAIATQSRTIRLPV 261
>gi|428203439|ref|YP_007082028.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427980871|gb|AFY78471.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 407
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 74/101 (73%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA AG+D +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 147 WAEIAGMDVQELDRIQKAGIRAKEHMIEANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 206
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 207 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 247
>gi|282900041|ref|ZP_06308000.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195073|gb|EFA70011.1| sigC (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 432
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 22/163 (13%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN--- 361
RLL AN Q A + L+L ++E L G P+ +WA+ AG+ +L+ L+
Sbjct: 110 RLLLANAAKQGDALVVPYLQLIEVQERLVSELGHRPSLERWASTAGIKLVDLKPTLSEGK 169
Query: 362 -------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG G
Sbjct: 170 RRWAEIAKLTVEELDQIQSQGIQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLG 229
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 230 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 272
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 96/155 (61%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q ++ L+E GS TF
Sbjct: 17 SDPVSWYLATIGRIPLLTPAEEIELGNQVQAMM-------TLTE--DGSKTFEDHELTG- 66
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 67 ----KQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|318041016|ref|ZP_07972972.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 323
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 103/161 (63%), Gaps = 4/161 (2%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG-SPTFAQWAAAAGVDQ 353
R+LRA LLTA+EE+ L +Q+ L E L R GG +P+ WA++ +
Sbjct: 17 RHLRAIGRVP-LLTADEEISLGRAVQNGRLLLEAAEELKLRAGGEAPSLEAWASSVNLSP 75
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
R+L+R+L ++M+T+N+RLV+S+A+ ++L DL+QEG GL+R ++FD S
Sbjct: 76 RQLQRQLRLAERASEQMVTANLRLVVSLARRISHRRLDLDDLIQEGTLGLIRAVQRFDPS 135
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNLQ 454
+G+KFSTYA WWI++ + ++L QSRTIRLP +H + LQ
Sbjct: 136 RGYKFSTYATWWIREGMGRALQQQSRTIRLP--AHMQDRLQ 174
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 44/199 (22%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL-----------EGL----------R 329
+D +R RLL +EE+ + +Q ++L EGL R
Sbjct: 103 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYIRLLELRNTAAEQEEGLIRRYVELIEAR 162
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQ-RELRR----------------------RLNYGILC 366
+ L+ + G P+ +WAA AGV + EL+R + GI
Sbjct: 163 DRLAAQLGHRPSLERWAALAGVAEVSELKRIMAEGKRRWAELAGVTLEALDQMITEGIQA 222
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTYA+WWI
Sbjct: 223 KDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWI 282
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + ++++ QSRTIRLPV
Sbjct: 283 RQGITRAIATQSRTIRLPV 301
>gi|33866957|ref|NP_898516.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639558|emb|CAE08942.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 467
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA A ++ REL+ L G KD MI +N+RLV+++AK YQ GM L DLVQEG
Sbjct: 203 YGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMELLDLVQEGTL 262
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 263 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPV 306
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 364
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 365 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPV 238
>gi|158316157|ref|YP_001508665.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158111562|gb|ABW13759.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 400
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 98/160 (61%), Gaps = 23/160 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLL----KLEGLREVLSERCGGSPTFAQW 345
SDP+R YL+A RLLTA EE+ L+ I+ L KL +R SP
Sbjct: 101 SDPVRMYLKAI-GRVRLLTAEEEVDLAKRIEAGLFASEKLAAIRRT-------SPRL--- 149
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+R+L G + K K++ +N+RLV+SIAK Y G GM L DL+QEG GL+R
Sbjct: 150 -------RRDLEAIEQDGQIAKRKLVEANLRLVVSIAKRYVGRGMLLLDLIQEGNLGLIR 202
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QAV ++++DQ RTIR+PV
Sbjct: 203 AVEKFDYTKGYKFSTYATWWIRQAVTRAIADQGRTIRIPV 242
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E +SE G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 169 IRQGITRAIAEKSRAIRLPI 188
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGI 364
LL+ +EE+ L+ +Q L+ L R L G P+ +WA A G + LR R+ +
Sbjct: 17 LLSLDEEVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMK 76
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
C++++I N+RLV+S+AK Y G+ DL QEG GL + ++FD SKGF+FSTYA W
Sbjct: 77 ACREELIQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPSKGFRFSTYAVW 136
Query: 425 WIKQAVRKSLSDQSRTIRLPVISH 448
WI+QAV +++ QSRTIRLP H
Sbjct: 137 WIRQAVAHAVAHQSRTIRLPTHVH 160
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI-------------- 364
++D + L+ R+ L+ + G P+F WA ELR+ L G+
Sbjct: 90 LKDYVDLQEGRDRLTAQLGHRPSFEAWAKIVDCSLTELRQALQLGLHRWAEVCQLDLEEL 149
Query: 365 --LCK------DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
+CK D MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG+
Sbjct: 150 KQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGY 209
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 210 RFSTYAYWWIRQGITRAIATQSRTIRLPV 238
>gi|302335781|ref|YP_003800988.1| RNA polymerase sigma-70 subunit RpoD [Olsenella uli DSM 7084]
gi|301319621|gb|ADK68108.1| RNA polymerase, sigma 70 subunit, RpoD [Olsenella uli DSM 7084]
Length = 453
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 17/158 (10%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA+EE M++ AG + +LE ++R T A+
Sbjct: 150 DPVRMYLKEIGKVDLLTASEEVHLAMKIEAGTEATERLEA-----ADRGEIELTRAE--- 201
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
QR L R G+ K +I++N+RL +SIAK Y G GM DL+QEG GL+R
Sbjct: 202 -----QRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 256
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 257 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 294
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ +N Q + L++ ++E L+ G P+ +WA+AAGV+
Sbjct: 89 RYLRM-----RIVLSNAAKQGDEILIPYLRVIEVQERLASELGHRPSIERWASAAGVEVL 143
Query: 355 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL++ L G + K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 ELKQILGQGKRRWAEIAKLTVEELEKIQSDGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|359489968|ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
vinifera]
Length = 497
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S LLT + + LS I+ L LE + L ER G PT Q AA+ + + E
Sbjct: 185 YVKGVVSEE-LLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMSRAE 243
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L+ +L L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKG
Sbjct: 244 LQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 303
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
FK STY +WWI+Q V ++L + SRT+RLP H R +L
Sbjct: 304 FKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSL 341
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + AN Q I L+L ++E LS G P+ +WA AG++
Sbjct: 85 RYLRMRT-----VLANAAKQGDEVIVPYLRLIEVQERLSSELGHRPSLERWATTAGIELP 139
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 140 DLKPTLANGKRRWAETAKLTVEELDQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 199
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 200 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 252
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 27/164 (16%)
Query: 291 SDPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LLTA EE M++ AG+ + +LE A
Sbjct: 105 GDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEK------------------A 146
Query: 347 AAAGVD-QRELRRRLN----YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
G++ +R +RRL GI K ++I +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 147 EDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 206
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 207 GLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 250
>gi|297837779|ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 160 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 208
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 209 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 268
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 269 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 328
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 329 VDNSRTLRLPTHLHERLGL 347
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 74/102 (72%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
QWAA A + EL R GI K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL
Sbjct: 157 QWAALASLTVEELERTQAEGIGAKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGL 216
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R +KFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 217 ERAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 258
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 9/125 (7%)
Query: 330 EVLSERCG-----GSPTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
E LS+ CG PT QWA G+ +EL + G K+ MI +N+RLV+S
Sbjct: 150 ERLSKECGIESIELKPTLQAGKRQWAELVGMSVQELDEACSEGTRAKEHMIKANLRLVVS 209
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
+AK YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRT
Sbjct: 210 VAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRT 269
Query: 441 IRLPV 445
IRLPV
Sbjct: 270 IRLPV 274
>gi|359463990|ref|ZP_09252553.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 326
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 10/158 (6%)
Query: 298 RATTSSSR----------LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
RATT R LLT +E+ +Q + L + L E S + A WA
Sbjct: 11 RATTDLVRNYLHEIGRIPLLTHEQEVLYGKQVQQMKMLLARKVELEEINPTSISQADWAQ 70
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A + + EL + L G K+KMI +N+RLV+S+AK Y M L DL+QEG GL RG
Sbjct: 71 AVELTESELEQALVQGQRAKNKMIQANLRLVVSVAKQYLRRNMELLDLIQEGSLGLERGV 130
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFD SKG++FSTYA+WWI+QA+ ++++ QSRTIRLPV
Sbjct: 131 DKFDPSKGYRFSTYAYWWIRQAMTRAIAQQSRTIRLPV 168
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 93/163 (57%), Gaps = 23/163 (14%)
Query: 306 LLTANEEMQLS-AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL---- 360
LL EE S I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 101 LLETREEFLDSHPAIAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGK 160
Query: 361 ------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG G
Sbjct: 161 TAWAEKAELSNAELDQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLG 220
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 221 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 263
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 89/135 (65%)
Query: 311 EEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKM 370
EE++LS IQ L ++ R ++ G P+ + AAA + LR R+ G + K+
Sbjct: 69 EEIELSRKIQQKLLIDQARREWRQQWGQDPSDEELAAALQIPVSTLRSRIRQGEQAQRKL 128
Query: 371 ITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 430
I +N+RLV+S+AK Y G+ DL+QEG GL+R EKF+A +GF+FSTYAHWWI+Q +
Sbjct: 129 INANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHWWIRQGI 188
Query: 431 RKSLSDQSRTIRLPV 445
+ +++Q+RTIRLPV
Sbjct: 189 TRCIANQARTIRLPV 203
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ-RELRRRLNYGI 364
LL+A EE++L+ I+ L+ E +R+ L+++ +P+ +W A Q R+ L
Sbjct: 71 LLSAAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQVRQFEIWLYQLR 130
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K +MI SN+RLV+SIAK Y G+ DL+QEG GL R AEKFD KG+KFSTYA+W
Sbjct: 131 AAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYW 190
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 191 WIRQAITRTIANDARTIRLPI 211
>gi|11762220|gb|AAG40388.1|AF325036_1 At1g64860 [Arabidopsis thaliana]
Length = 502
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 268 VRLVMSIAQRYNNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 327
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 328 VDNSRTLRLPTHLHERLGL 346
>gi|15217767|ref|NP_176666.1| sigma factor A [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA polymerase sigma factor sigA; Short=Sigma factor
A; Short=Sigma-A; AltName: Full=RNA polymerase sigma
factor sig1; Short=Atsig1; Short=Sigma factor 1;
AltName: Full=RNA polymerase sigma factor sig2;
Short=Atsig2; Short=Sigma factor 2; AltName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; Flags: Precursor
gi|5042421|gb|AAD38260.1|AC006193_16 RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis thaliana]
gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis thaliana]
gi|2558514|emb|CAA74640.1| plastid RNA polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA [Arabidopsis thaliana]
gi|17064900|gb|AAL32604.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|222423019|dbj|BAH19492.1| AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| sigma factor A [Arabidopsis thaliana]
Length = 502
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 327
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 328 VDNSRTLRLPTHLHERLGL 346
>gi|2565297|gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHAEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 327
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 328 VDNSRTLRLPTHLHERLGL 346
>gi|356543070|ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 503
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 94/151 (62%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
S LL+ E + LS I+ L LE + L E+ G P+ Q A + + + ELR R+
Sbjct: 197 SEELLSHAEVVNLSEKIKVGLSLEEHKSRLKEKLGCEPSDDQMATSLKISRTELRARMIE 256
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGFK STY
Sbjct: 257 CSLAREKLAMSNVRLVMSIAQKYDNLGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYV 316
Query: 423 HWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
+WWI+Q V ++L + SRT+RLP H R +L
Sbjct: 317 YWWIRQGVSRALVENSRTLRLPAHLHERLSL 347
>gi|6682871|dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 93/148 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT E +QLS I+ L LE + L ER G P+ Q A + + + +LR L L
Sbjct: 199 LLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDDQLAISLKISRADLRSTLIECSL 258
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++K+ SN+RLV+SIA+ Y G + DL+Q G GL+RG EKFD S+GFK STY +WW
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGLLRGIEKFDHSRGFKISTYVYWW 318
Query: 426 IKQAVRKSLSDQSRTIRLPVISHGRGNL 453
I+Q V ++L + SRT+RLP+ H R +L
Sbjct: 319 IRQGVSRALVENSRTLRLPIHLHERLSL 346
>gi|2385344|emb|CAA74896.1| sigma factorB [Arabidopsis thaliana]
Length = 500
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 157 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 205
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 206 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 265
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 266 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 325
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 326 VDNSRTLRLPTHLHERLGL 344
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 104/199 (52%), Gaps = 44/199 (22%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR--------------------- 329
+D +R RLL +EE+ + +Q +KL LR
Sbjct: 59 TDLVRLYLQEIGRVRLLRRDEEVSEAQKVQRYMKLLRLRNNKSAISEDKVMERFVHLIEI 118
Query: 330 -EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL----------------------C 366
+ L+ + G P+ +WA AAG+D +L+ ++ G L
Sbjct: 119 HDRLASQLGHRPSLERWATAAGIDVSQLKPSMSAGKLRWAELAELTSKELEQVQAEGLQA 178
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG++FSTYA+WWI
Sbjct: 179 KEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWI 238
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + ++++ QSRTIRLPV
Sbjct: 239 RQGITRAIATQSRTIRLPV 257
>gi|87125501|ref|ZP_01081346.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86166801|gb|EAQ68063.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 312
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 98/155 (63%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q++++L +E +P +++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQEMMRL-------TEDGTLAPDHDGFSSHD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
RR + G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 69 ------RRMIRVGKRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 43/198 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 28 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYVQLVELRDTEAETNGGVLQTYVNLLKVR 87
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ EL++ + G C K
Sbjct: 88 DRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAELANLSVEELKQVQREGIQAK 147
Query: 368 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 427
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 148 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 207
Query: 428 QAVRKSLSDQSRTIRLPV 445
Q + ++++ QSRTIRLPV
Sbjct: 208 QGITRAIATQSRTIRLPV 225
>gi|334183639|ref|NP_001185314.1| sigma factor A [Arabidopsis thaliana]
gi|332196178|gb|AEE34299.1| sigma factor A [Arabidopsis thaliana]
Length = 498
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 112/199 (56%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR+ R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARQRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 327
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 328 VDNSRTLRLPTHLHERLGL 346
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E P+ + AA + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAELEIIELTDNKPSVEELAAKLNLSSSQIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 158 IRQGITRAIAEKSRAIRLPI 177
>gi|146739110|gb|ABQ42602.1| chloroplast RNA-polymerase sigma factor precursor [Heterosigma
akashiwo]
Length = 404
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD ++ + +LTA EE+ L+ I+ +++E L + G PT +W G
Sbjct: 72 SDTMKEYVKDLRTVDMLTAQEEILLTRQIKRGMEIEKALVTLEKTLGRKPTEEEWVNFVG 131
Query: 351 VDQ-RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+ ++R+ L K +I +N+RLV+S AK YQ G++ QDLVQEG GL + EK
Sbjct: 132 LKSIDDIRKNLKRASKSKSAIINANLRLVVSTAKAYQYRGVSFQDLVQEGTCGLHKATEK 191
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
FD KGF+FSTYA WWIKQ + ++++DQSR +RLPV H
Sbjct: 192 FDPRKGFRFSTYATWWIKQGIMRAVTDQSRVVRLPVHVH 230
>gi|116071891|ref|ZP_01469159.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
gi|116065514|gb|EAU71272.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. BL107]
Length = 355
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 75/104 (72%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA A ++ +EL+ L G KD MI +N+RLV+++AK YQ GM + DLVQEG
Sbjct: 91 YVAWAEQAAIEAKELKLSLRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTL 150
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 151 GLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSRTIRLPV 194
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN A I+ L+L ++E L+ G P+ +WA AG+
Sbjct: 89 RYLRM-----RIVLANAAKLGDAVIEPYLRLIEVQERLTSELGHRPSLERWATTAGIVLS 143
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPTLANGKRRWAEIAKLTVEELEQIQTQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 23/161 (14%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 141 DPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEAG 184
Query: 348 AAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 185 EIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 244
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 245 RAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 285
>gi|315226631|ref|ZP_07868419.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
gi|315120763|gb|EFT83895.1| DNA-directed RNA polymerase sigma subunit RpoD [Parascardovia
denticolens DSM 10105 = JCM 12538]
Length = 690
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 387 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 437
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 438 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 495
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 496 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 530
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
++PL T +LL +EE+ L IQ L+LE +R+ L G +P+ +WA+
Sbjct: 225 ANPLNVYFKTLKKIKLLKPDEEVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLH 284
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ + EL R L K+ MI++N+RLV+S+A+ Y+G G+ DL+QEG GLV+ EKF
Sbjct: 285 LTKDELLRELAVADEAKEHMISANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKF 344
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
+ GF+F TYA WWIK+++ +++QSR IRLP H
Sbjct: 345 NPEMGFQFYTYARWWIKKSILTGIANQSRVIRLPTQVH 382
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMS-------VKSGSTSRRKRPSVQEVDYSDPLRY 296
+ V + ++ ERK+RR RA+ + S ++SGS ++P+V +
Sbjct: 204 VVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPIQSGS----EKPTVSSGKKA----- 254
Query: 297 LRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 356
+ + S RL+ A E +++ GI+ L LE +R L E + + WA AAG+D + L
Sbjct: 255 --SKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGLDVKVL 312
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
+++L++G C+D++I S LV+ A+NY+G G+ L+DL+Q G G++ GAE+FD ++G+
Sbjct: 313 QQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFDHTRGY 372
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+FSTY +WI++++ K +S +R I++P
Sbjct: 373 RFSTYVQYWIRKSMSKIVSRLARGIQIP 400
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 66/80 (82%)
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KDKM+ SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQSRTIRLPV
Sbjct: 249 IRQAITRAIADQSRTIRLPV 268
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 360
I + +L +R+ L+ G P+F +WA A + +L+ RL
Sbjct: 115 IAEYARLTDVRDRLTAMLGHRPSFNRWAKEADIPVADLKPRLAEGKTAWAEKAELSNAEL 174
Query: 361 ----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG+
Sbjct: 175 DQIVKQGIKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 234
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 235 RFSTYAYWWIRQGITRAIATQSRTIRLPV 263
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 109/194 (56%), Gaps = 27/194 (13%)
Query: 264 KAAANV----MSVKSGSTSRRKRPSVQEVDY--SDPLRYLRATTSSSRLLTANEEMQLSA 317
KA +V +S KS S RKR + + DP+R LLTA EE+ L+
Sbjct: 82 KATVDVQLPKVSSKSKVRSARKRSADAGITVLTGDPVRMYLKEIGKVPLLTAAEEIDLAM 141
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAGVD-QRELRRRLN----YGILCKDKMI 371
I+ G + T + A G++ +R +RRL GI K ++I
Sbjct: 142 KIE---------------AGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLI 186
Query: 372 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 431
+N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+
Sbjct: 187 EANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAIT 246
Query: 432 KSLSDQSRTIRLPV 445
++++DQ+RTIR+PV
Sbjct: 247 RAIADQARTIRIPV 260
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 95/155 (61%), Gaps = 13/155 (8%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ GL +E+ GG + A
Sbjct: 94 SDPVRMYLKEIGKVPLLTAAEEVDLAKRIE-----AGL--FAAEKLGGG---RRLTVALR 143
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EKF
Sbjct: 144 VDLEAVARD---GDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKF 200
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 201 DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 235
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 43/198 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG------------ 338
+D +R RLL +EE+ + +Q ++L LR+ +E GG
Sbjct: 50 TDLVRLYLQEIGRVRLLGKDEEVSEAQKVQRYVQLVELRDTEAETKGGVLQTYVNLLKVR 109
Query: 339 ---------SPTFAQWAAAAGVDQRELRRRLNYGILC----------------------K 367
P+ +WAAA GV+ +L++ + G C K
Sbjct: 110 DRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAELANLSVEELKQVQREGLQAK 169
Query: 368 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 427
D MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI+
Sbjct: 170 DHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWIR 229
Query: 428 QAVRKSLSDQSRTIRLPV 445
Q + ++++ QSRTIRLPV
Sbjct: 230 QGITRAIATQSRTIRLPV 247
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 93/161 (57%), Gaps = 23/161 (14%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA EE M++ AG+ KLE Q A
Sbjct: 144 DPVRMYLKEIGKVDLLTAAEEVDLAMKIEAGLDAADKLE----------------KQEAG 187
Query: 348 AAGVDQRELRRRL---NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
+ + E+RR + G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL+
Sbjct: 188 EIELTRAEMRRLMRVEQVGLDAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLI 247
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 248 RAVEKFDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPV 288
>gi|317969234|ref|ZP_07970624.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0205]
Length = 311
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 93/141 (65%), Gaps = 11/141 (7%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q +++L ERC + + + +++R +R G
Sbjct: 16 QLLTPEQELMLGRKVQAMVQLH-------ERCAMAGGVGEACSYNDIEKRTMR----VGE 64
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
KD+MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTYA+W
Sbjct: 65 RAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 124
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++LS QSRTIR+PV
Sbjct: 125 WIRQGLNRALSTQSRTIRIPV 145
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 127 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 186
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
++++ S RLV+SIA YQG G++LQDL+QEG GL+RGAE+FD +G+K STY +
Sbjct: 187 RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVY 246
Query: 424 WWIKQAVRKSLSDQSRTIRLP 444
WWI+QA+ ++++++SR IRLP
Sbjct: 247 WWIRQAIVRAIANKSRIIRLP 267
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 88/140 (62%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ + +Q ++ L +E L+ + PT +WA + L +L+ G
Sbjct: 44 LLTREQEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQ 103
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+++AK YQ + DL+QEG GL RG +KFD + G+KFSTYA+WW
Sbjct: 104 AKQKMIQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWW 163
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++ Q RTIRLP+
Sbjct: 164 IRQGITRAIAQQGRTIRLPI 183
>gi|148240795|ref|YP_001226182.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147849334|emb|CAK24885.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 376
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 102/197 (51%), Gaps = 42/197 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--------------------AGIQDLLKLEGLRE 330
+D LR LLT+ EE+ LS A I+ LL LE L++
Sbjct: 19 NDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDLSTRIAAIRVLLDLEELQQ 78
Query: 331 VLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC----------------------KD 368
+ PT +WA AA + EL R LN G +D
Sbjct: 79 REANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESGLEAKELQRRLREGRRARD 138
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
+MI +N+RLV+++AK YQ GM L DLVQEG GL R EKFD ++GF+FSTYA+WWI+Q
Sbjct: 139 RMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQ 198
Query: 429 AVRKSLSDQSRTIRLPV 445
+ ++++ QSRTIRLPV
Sbjct: 199 GITRAIATQSRTIRLPV 215
>gi|452819932|gb|EME26982.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 544
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 92/139 (66%), Gaps = 1/139 (0%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV-DQRELRRRLNYGIL 365
L+ EE+ + IQ L E R+ +SE G +PT A+WA A G D E R++
Sbjct: 219 LSFEEEVDICNQIQLLRTWERERDRVSELLGRNPTLAEWAEAVGFSDSVEFARKIKGLRE 278
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KDK+I SN+RLV IA+ Y G++LQDL+QEG GL++ AE+FD+SKGF+F +YA WW
Sbjct: 279 SKDKIIHSNLRLVYYIARFYSKYGLSLQDLMQEGSIGLIKAAERFDSSKGFRFGSYAIWW 338
Query: 426 IKQAVRKSLSDQSRTIRLP 444
IK A+ ++L++Q+R R+P
Sbjct: 339 IKYAMTRALTEQTRHWRIP 357
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 97/173 (56%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVD-- 352
RY+R ++ T E + I+ + L + L+ + G P+ +WA AGVD
Sbjct: 89 RYMRLLDLRAKFATPEEPV-----IEHFVHLIETHDRLASQLGHRPSLERWATTAGVDVA 143
Query: 353 ----------QR----------ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
QR EL + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 TLKPSLVKGKQRWAELAELTVKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 204 LDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 256
>gi|423348933|ref|ZP_17326589.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
gi|393703162|gb|EJD65363.1| RNA polymerase principal sigma factor hrdB [Scardovia wiggsiae
F0424]
Length = 593
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 290 SDPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHL---LDTSPAEDLTFQR------ 340
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+RELR N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 341 --RRELRWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 398
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 399 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 433
>gi|386386524|ref|ZP_10071665.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
gi|385666011|gb|EIF89613.1| RNA polymerase sigma factor [Streptomyces tsukubaensis NRRL18488]
Length = 409
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 92/140 (65%), Gaps = 12/140 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ G+P AA +D R + G +
Sbjct: 124 LLTAAEEVELARCVEAGLFAE-------EKLAGTPDLNDSPLAADLD-----RLVVLGRM 171
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 172 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 231
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 232 IRQAMSRALADQARTIRVPV 251
>gi|126660028|ref|ZP_01731150.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
gi|126618706|gb|EAZ89453.1| RNA polymerase sigma-C factor [Cyanothece sp. CCY0110]
Length = 418
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 73/102 (71%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 157 QWATEANIDVKELDEIQKSGIRAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 216
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 217 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 258
>gi|161899381|ref|XP_001712917.1| sigma 2 transcription factor [Bigelowiella natans]
gi|75756411|gb|ABA27305.1| sigma 2 transcription factor [Bigelowiella natans]
Length = 389
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 87/138 (63%)
Query: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCK 367
T+ E + ++DLL+ E L L + G PT + E++ RL G + K
Sbjct: 92 TSTNESIIMEWVKDLLRWEDLFLKLENKLGFYPTIDFFTKGIIDLTSEIKERLAIGKISK 151
Query: 368 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 427
+ +I +++L+ISIAK Y G G++ +DL+ EG GL++G K+D SKG KFSTYAHWWI+
Sbjct: 152 EILIKRSLKLIISIAKRYNGCGLSFEDLIAEGILGLMKGIRKYDFSKGHKFSTYAHWWIR 211
Query: 428 QAVRKSLSDQSRTIRLPV 445
Q++ +S+ DQSR IRLPV
Sbjct: 212 QSISRSIDDQSRIIRLPV 229
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ L ++ ++ L G T Q A + +++L RL G +
Sbjct: 91 LLKPDEEVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRV 150
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 151 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 210
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 211 IRQAITRAIANDARTIRLPI 230
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 109/207 (52%), Gaps = 39/207 (18%)
Query: 259 TRAAEKAAANVMSVKSGSTSR----RKRPSVQEVDYS------DPLRYLRATTSSSRLLT 308
+ A+ A A + S K SR R R + +D S DP+R LLT
Sbjct: 97 VKVAKMADAEMASEKPKKKSRVRTARSRNRARGIDASTVMLTGDPVRMYLKEIGKVDLLT 156
Query: 309 ANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRR 358
A +E M++ AG++ KLE AA AG + R L R
Sbjct: 157 AADEVDLAMKIEAGLEASNKLE-------------------AADAGEIELTRAEMRRLTR 197
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
G+ K +I++N+RLV+SIAK Y G GM DL+QEG GL+R EKFD KGFKF
Sbjct: 198 VEQVGLEAKQALISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKF 257
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPV 445
STYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 258 STYATWWIRQAITRAIADQARTIRIPV 284
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 96/164 (58%), Gaps = 4/164 (2%)
Query: 284 SVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE--RCGGSPT 341
S V+ DP+R LLTA EE+ L+ ++ LK + E+L E R G
Sbjct: 295 STDAVNIDDPVRMYLKEIGKVHLLTAEEEVDLAQKMEKGLKADEQIEILREEIRSGDLSE 354
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
A + + L+ G K K+ +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 355 EDMMNLEAQI--KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 412
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL++ EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 413 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 456
>gi|148240072|ref|YP_001225459.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147848611|emb|CAK24162.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 313
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 95/157 (60%), Gaps = 18/157 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q L++L + AA
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLT----------------EDGSIAAD 60
Query: 351 VDQRE--LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
DQ + RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R E
Sbjct: 61 SDQFDGKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE 120
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 121 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|172036788|ref|YP_001803289.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|354554599|ref|ZP_08973903.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698242|gb|ACB51223.1| group 2 sigma-70 RNA polymerase sigma factor C [Cyanothece sp. ATCC
51142]
gi|353553408|gb|EHC22800.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 420
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 73/102 (71%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
QWA A +D +EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 159 QWATLANIDIQELEEIQKSGIRSKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGL 218
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 219 EKAVEKFDPIKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 260
>gi|2398851|dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 111/199 (55%), Gaps = 12/199 (6%)
Query: 256 ARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQ 314
AR R K N+ VK+ V +V +R Y++ S +L+ E ++
Sbjct: 159 ARPRRIGAKKKTNMTHVKA----------VSDVSSGKQVRGYVKGVISED-VLSHVEVVR 207
Query: 315 LSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSN 374
LS I+ L+L+ + L +R G P+ Q A + + + EL+ L L ++K+ SN
Sbjct: 208 LSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSN 267
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L
Sbjct: 268 VRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRAL 327
Query: 435 SDQSRTIRLPVISHGRGNL 453
D SRT+RLP H R L
Sbjct: 328 VDNSRTLRLPTHLHERLGL 346
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ +Q L L R L G P+ +WA+ A + EL + G
Sbjct: 23 LLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQGGER 82
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KM+ +N+RLV+S+AK Y ++L DL+QEG G+ RG EKFD +KG++FSTYA+WW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++++ RTIRLP+
Sbjct: 143 IRQAITRAIAEKGRTIRLPI 162
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 95/150 (63%), Gaps = 15/150 (10%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ I+ L E + L E+ AAG++ E
Sbjct: 76 YLREIGKVP-LLTAEEEVELAKAIEAGLFAE---DKLCEK-----------KAAGIECPE 120
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L + GI K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +KG
Sbjct: 121 LEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKG 180
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 181 YKFSTYATWWIRQAITRAIADQARTIRIPV 210
>gi|113475621|ref|YP_721682.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166669|gb|ABG51209.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 410
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GVDQREL 356
IQ +++ +R+ L+ R G P+F +W A G++ +EL
Sbjct: 102 IQRYVEMIKIRDRLAARLGHKPSFERWLKAGNLSMAELKEIIAVGKLRWAKLTGLNVKEL 161
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
+ GI + +MI++N+RLV+SIAK YQ G+ L DL+QEG GL R EKFD +G+
Sbjct: 162 EQIQTEGIEARHQMISTNLRLVVSIAKKYQNRGVELLDLIQEGTLGLERAVEKFDPQRGY 221
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + ++++ QSRTIRLP+
Sbjct: 222 RFSTYAYWWIRQGITRAIATQSRTIRLPI 250
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG-VDQRELRRRLNYGI 364
LLT +E+ +Q + L+ +++ L+++ G P+ +WA A+G +D +L + + G
Sbjct: 27 LLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIADGE 86
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K K++ +N+RLV+SIAK Y + L DL+QEG GL RG EKFD +KG++ STYA+W
Sbjct: 87 SAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEKFDPTKGYRLSTYAYW 146
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++ SR IRLP+
Sbjct: 147 WIRQAITRAIAQNSRNIRLPI 167
>gi|345851793|ref|ZP_08804757.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
gi|345636744|gb|EGX58287.1| RNA polymerase sigma factor [Streptomyces zinciresistens K42]
Length = 442
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ GG+P A
Sbjct: 143 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLGGTPDLDSELAL- 193
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 194 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 248
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 249 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 284
>gi|87302558|ref|ZP_01085375.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
gi|87282902|gb|EAQ74859.1| Sigma-70 factor family protein [Synechococcus sp. WH 5701]
Length = 307
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 92/140 (65%), Gaps = 11/140 (7%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT +E+ L +Q ++ L+ERC + + V++R +R G
Sbjct: 17 LLTPTQELTLGRKVQAMV-------ALNERCALAGGNGEACDYNDVERRTIR----TGER 65
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KD+MIT+N+RLV+++AK YQG G++L DL+QEG GLVR EK+D ++G +FSTYA+WW
Sbjct: 66 AKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLVRAVEKYDPTRGHRFSTYAYWW 125
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++LS QSRTIR+PV
Sbjct: 126 IRQGLNRALSTQSRTIRIPV 145
>gi|88809137|ref|ZP_01124646.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88787079|gb|EAR18237.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 313
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q L++L GS AA +
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQKLMQLTE---------DGSI-----AADSE 62
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ + RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 63 LFDSKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 21/160 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAG 350
DP+R LLTA EE+ L+ I+ G + T + A G
Sbjct: 91 DPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDEG 135
Query: 351 V-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 IELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 195
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 196 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 235
>gi|157412994|ref|YP_001483860.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157387569|gb|ABV50274.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 307
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G+ L DL+QEG GL R EK+D S+G +FSTY
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTY 120
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + K+LS QSRTIR+PV
Sbjct: 121 AYWWIRQGLNKALSTQSRTIRIPV 144
>gi|324999213|ref|ZP_08120325.1| RNA polymerase sigma factor SigB [Pseudonocardia sp. P1]
Length = 380
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 25/149 (16%)
Query: 306 LLTANEEMQLSAGIQ---------DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQREL 356
LLTA EE+ L+ I+ D EG E L P + +R+L
Sbjct: 90 LLTAAEEVDLAKRIEAGIFAQHRLDTATAEGTLESLD------PQY----------RRDL 133
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
R + G L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGF
Sbjct: 134 RAVVRDGALAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGF 193
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFSTYA WWI+QA+ + ++DQ+RTIRLPV
Sbjct: 194 KFSTYATWWIRQAITRGMADQARTIRLPV 222
>gi|218440090|ref|YP_002378419.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172818|gb|ACK71551.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 21/154 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL + EE+QL+ +Q++L L +E L+ A V
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEVQLATKVQNMLPLLE-KENLTA-----------AEKKIV 54
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+Q G + K KMI +N+RLV+SIAK YQ G++L DL+QEG GL+R EKFD
Sbjct: 55 EQ---------GQIAKRKMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFD 105
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
SKG+KFSTYA+WW++QA+ ++L+++SRTIRLP+
Sbjct: 106 PSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPI 139
>gi|307152083|ref|YP_003887467.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982311|gb|ADN14192.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 418
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 74/101 (73%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA A ++ +EL R GI K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 158 WAELANLEVQELERVQKAGIYAKEQMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLE 217
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R +KFD +KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 218 RAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 258
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN Q I +L ++E LS G P+ +WA AG++
Sbjct: 89 RYLRL-----RIVLANAAKQGDEVIVPYQRLIEVQERLSSELGHRPSLERWATTAGIELS 143
Query: 355 ELRRRLN----------------------YGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
L+ L+ G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 NLKPTLSEGKRRWAEIAELTVLELEKIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E L E G P+ + + + +++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 158 IRQGITRAIAEKSRAIRLPI 177
>gi|307150096|ref|YP_003885480.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306980324|gb|ADN12205.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 298
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 95/154 (61%), Gaps = 19/154 (12%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LL + EE+QL+ +Q +L L L++ AAA
Sbjct: 7 DPVRSYLQEIGRIPLLNSEEEIQLATKVQKMLSLLELKK------------DNLAAAE-- 52
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
++ + G K +MI +N+RLV+SIAK YQ G++L DL+QEG GL+R EKFD
Sbjct: 53 -----QKIIEQGQRAKQQMIQANLRLVVSIAKRYQRRGLSLLDLIQEGSLGLIRAVEKFD 107
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
SKG+KFSTYA+WW++QA+ ++L+++SRTIRLP+
Sbjct: 108 PSKGYKFSTYAYWWVRQAITRALAEKSRTIRLPI 141
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 92/141 (65%)
Query: 304 SRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
S +LT EE + +++ LE R ++E PT QWA A G+ + L + L G
Sbjct: 20 SAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNG 79
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
++++ S RLV+SIA YQG G++LQDL+QEG GL+RGAE+FD +G+K STY +
Sbjct: 80 RESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVY 139
Query: 424 WWIKQAVRKSLSDQSRTIRLP 444
WWI+QA+ ++++++SR IRLP
Sbjct: 140 WWIRQAIVRAIANKSRIIRLP 160
>gi|307155201|ref|YP_003890585.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306985429|gb|ADN17310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 295
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 89/139 (64%), Gaps = 21/139 (15%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A +E++L+ +Q ++ L ++ +P E +R + G
Sbjct: 21 LLNAQQEIELATQVQKMM-------ALIDKENPTP--------------EEKRIIQQGKR 59
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI +N+RLV+SIAK YQ G++ DL+QEG GL+RG EKFD SKG+KFSTYA+WW
Sbjct: 60 AKRKMINANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFSTYAYWW 119
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+QA+ ++++DQSRTIRLP
Sbjct: 120 IRQAMTRAIADQSRTIRLP 138
>gi|81300366|ref|YP_400574.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
gi|81169247|gb|ABB57587.1| principal RNA polymerase sigma factor SigA [Synechococcus elongatus
PCC 7942]
Length = 310
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 17/140 (12%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 32 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 74
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 75 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 134
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q++ ++++ QSRTIRLPV
Sbjct: 135 IRQSMTRAIACQSRTIRLPV 154
>gi|352094648|ref|ZP_08955819.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351680988|gb|EHA64120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 308
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 16 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 64
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTYA+W
Sbjct: 65 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 124
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++LS QSRTIR+PV
Sbjct: 125 WIRQGLNRALSTQSRTIRIPV 145
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + AAA
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAAATR 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QAV ++++DQ+RTIR+PV
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAVTRAIADQARTIRIPV 234
>gi|307700837|ref|ZP_07637862.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
gi|307613832|gb|EFN93076.1| RNA polymerase sigma factor RpoD [Mobiluncus mulieris FB024-16]
Length = 614
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
REL + G+ K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 421
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 422 DYSKGYKFSTYATWWIRQAITRAMADQARTIRVPV 456
>gi|56750024|ref|YP_170725.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
gi|56684983|dbj|BAD78205.1| group2 RNA polymerase sigma factor RpoD6 [Synechococcus elongatus
PCC 6301]
Length = 316
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/140 (46%), Positives = 91/140 (65%), Gaps = 17/140 (12%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA++E++L +Q ++ L L E S+R TF + AA + G
Sbjct: 38 LLTADQEIELGQKVQVMMNL--LEETSSDR-----TFTEAETAA----------IQLGQR 80
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++MI +N+RLV+S+AK YQG G+ DL+QEG GL R EKFD SKG+KFSTYA WW
Sbjct: 81 AKERMIKANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWW 140
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q++ ++++ QSRTIRLPV
Sbjct: 141 IRQSMTRAIACQSRTIRLPV 160
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 351
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARLAHRPSLERWAKTAQISVSELKNALKAGKQHWAHLAGL 181
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 182 EVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 241
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 242 PTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPV 275
>gi|318040801|ref|ZP_07972757.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CB0101]
Length = 381
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 91/150 (60%), Gaps = 22/150 (14%)
Query: 318 GIQDLLKLEGLREVLSERCGGSPTFAQ----------------------WAAAAGVDQRE 355
+Q+L+ LE ++ L+ + G P Q WA + + E
Sbjct: 66 ALQELIDLEDDQQRLASQLGHWPAVQQLAEQQRCTVSELREQIRQKQQAWAEHSNLSVAE 125
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L++ L++G +D+MI +N+RLV+++AK YQ GM L DLVQEG GL R EK+D ++G
Sbjct: 126 LKQALHHGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKYDPTRG 185
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
F+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 186 FRFSTYAYWWIRQGITRAIATQSRTIRLPV 215
>gi|352096241|ref|ZP_08957121.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351676935|gb|EHA60086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 313
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 22/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLTA EE++L +Q ++L +
Sbjct: 17 SDPISWYLATIGRIPLLTAAEEIELGNQVQKFMELTQ------------------DGSVS 58
Query: 351 VDQREL----RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
D E RR + G K +M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R
Sbjct: 59 ADSEEFSSKDRRMIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERA 118
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 119 VEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|227875511|ref|ZP_03993651.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269977243|ref|ZP_06184216.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|306818820|ref|ZP_07452542.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
gi|227843847|gb|EEJ54016.1| RNA polymerase sigma factor SigA [Mobiluncus mulieris ATCC 35243]
gi|269934546|gb|EEZ91107.1| RNA polymerase principal sigma factor HrdB [Mobiluncus mulieris
28-1]
gi|304648506|gb|EFM45809.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus mulieris
ATCC 35239]
Length = 614
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ L+ I+ L E L + +E+ +P A
Sbjct: 314 SDPVKDYLKQIGKVALLNAEQEVNLAKRIEAGLYAEHL--LKTEQDSMTPKHA------- 364
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
REL + G+ K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 365 ---RELHWVVQDGVNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 421
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 422 DYSKGYKFSTYATWWIRQAITRAMADQARTIRVPV 456
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 93/160 (58%), Gaps = 21/160 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA-QWAAAAG 350
DP+R LLTA EE+ L+ I+ G + T + A G
Sbjct: 80 DPVRMYLKEIGKVPLLTAAEEIDLAMKIE---------------AGVAATAELERAEDEG 124
Query: 351 V-----DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+ D+R L R G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 125 IELNRRDKRRLTRVEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIR 184
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 185 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 224
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR-ELRRRLNYGI 364
LL EE+ L+ I+ L+K+E + L SPT A+ A ++ +L L G
Sbjct: 55 LLNPEEELTLAYQIKFLIKVEEQTQQLERELRRSPTKAELVTALALNSVGQLDNLLYQGR 114
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
+ K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD +KG+KFSTYA+W
Sbjct: 115 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRATEKFDPNKGYKFSTYAYW 174
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ +++++ +RTIRLP+
Sbjct: 175 WIRQAITRTIANDARTIRLPI 195
>gi|113953662|ref|YP_731106.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9311]
gi|113881013|gb|ABI45971.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9311]
Length = 307
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 11/141 (7%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q + L+ERC T A A V E +R + G
Sbjct: 15 QLLTPEQELTLGRKVQAM-------AALTERC----TMAGGEGDACVYSDEEKRTIKRGE 63
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTYA+W
Sbjct: 64 KAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 123
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++LS QSRTIR+PV
Sbjct: 124 WIRQGLNRALSTQSRTIRIPV 144
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 92/145 (63%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LLTA EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 159 LLTAEEEVDLAKRIEAGLYGAERLRQVEEEGQKLSP--------------QMRRDLNWIV 204
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 205 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 264
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 265 YATWWIRQAITRAMADQARTIRIPV 289
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
A WA G + EL + GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG G
Sbjct: 155 ASWAQVTGCEVNELEKIQKDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLG 214
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 215 LERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 257
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA----------------------GV 351
Q A +Q +KL +R+ L+ R P+ +WA A G+
Sbjct: 122 QGDAQVQQFVKLIAVRDQLTARSAHRPSLERWAKTAQITVSELKNALKAGKQRWAHLAGL 181
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 182 EVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 241
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 242 PTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPV 275
>gi|116073370|ref|ZP_01470632.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068675|gb|EAU74427.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 313
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + AT LLT EE++L +Q L+ L + G P + ++
Sbjct: 17 SDPISWYLATIGRIPLLTPAEEIELGNQVQQLMALT--------QDGTIPIDSDQFSSKD 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------RRIIRVGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 43/198 (21%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL---------------------R 329
+D +R RLL +EE+ + +Q LKL L +
Sbjct: 62 TDLVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLKLRILLSEAASKGDELLAHYLKIIEAQ 121
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG----------------------ILCK 367
E L+ G P+ +WA AG+++ EL+ L+ G + K
Sbjct: 122 ERLTSELGHRPSMKRWANTAGIEESELKGALSQGKRRWAETAKLTVQELEQIQTQGLQAK 181
Query: 368 DKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK 427
+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL R EKFD +KG++FSTYA+WWI+
Sbjct: 182 EHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIR 241
Query: 428 QAVRKSLSDQSRTIRLPV 445
Q + ++++ SRTIRLPV
Sbjct: 242 QGITRAIATSSRTIRLPV 259
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 3/165 (1%)
Query: 283 PSVQEVDYSDPL--RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSP 340
PS E SD L YL R+ T EE+ L+ IQ L ++G RE L+ R G
Sbjct: 22 PSRSEAQGSDDLVDLYLNEIGRIPRV-TPEEEIHLARRIQAKLAIDGAREELAMRLGRPS 80
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
AA G D + L G+ + K+I +N+RLV+SIAK Y G + DL+QEG
Sbjct: 81 PEEDVAAFMGRDPKALIEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGN 140
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD KG++FSTYA WWI+Q++ +++++Q+RTIRLP+
Sbjct: 141 IGLMRATEKFDPEKGYRFSTYATWWIRQSITRAIANQARTIRLPI 185
>gi|416375138|ref|ZP_11683291.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
gi|357266581|gb|EHJ15189.1| Group 2 RNA polymerase sigma factor @ Cyanobacteria-specific
RpoD-like sigma factor, type-7 [Crocosphaera watsonii WH
0003]
Length = 418
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+QWA A +D EL GI KD+MI +N+RLV+S+AK YQ G+ L DL+QEG G
Sbjct: 156 SQWAVLANMDVAELEEIQKSGIKAKDEMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLG 215
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L + EKFD KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 216 LEKAVEKFDPVKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 258
>gi|159470255|ref|XP_001693275.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
gi|42742499|gb|AAM88387.2|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
gi|47076042|emb|CAF25319.1| sigma-like transcription factor [Chlamydomonas reinhardtii]
gi|158277533|gb|EDP03301.1| chloroplast RNA polymerase sigma factor, c [Chlamydomonas
reinhardtii]
Length = 752
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 92/139 (66%)
Query: 307 LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILC 366
L +E +++A +D L LE ++ + T + AAA +D L+ R + G+
Sbjct: 431 LDVEKEREVTAVCRDFLFLEKVKRQCEKTLHRPATSEEIAAAVAMDVESLKLRYDAGLKA 490
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
K+ ++ SN +LV+++ K++ G G ++QDLV EG +GL++G EK+DA+KGF+F TYAHWWI
Sbjct: 491 KELLLKSNYKLVMTVCKSFVGKGPHIQDLVSEGVKGLLKGVEKYDATKGFRFGTYAHWWI 550
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QAV +SL++ R +RLP+
Sbjct: 551 RQAVSRSLAETGRAVRLPM 569
>gi|318041996|ref|ZP_07973952.1| RNA polymerase sigma factor, sigma-70 family protein [Synechococcus
sp. CB0101]
Length = 318
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 92/141 (65%), Gaps = 11/141 (7%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
+LLT +E+ L +Q ++ L ERC + + + +++R +R G
Sbjct: 25 QLLTPEQELMLGRKVQAMV-------ALHERCHSAGGVGEACSYNDIEKRTMR----VGE 73
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
KD+MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTYA+W
Sbjct: 74 RAKDQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYAYW 133
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+Q + ++LS QSRTIR+PV
Sbjct: 134 WIRQGLNRALSTQSRTIRIPV 154
>gi|3077740|dbj|BAA25788.1| SigC [Cyanidium caldarium]
Length = 424
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 94/178 (52%), Gaps = 30/178 (16%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y+R RL T E LS QD L RE L + G PT +W+ GV + E
Sbjct: 74 YVREICRLDRL-TDEEVASLSLATQDYCALMKQREELCAKLGREPTDTEWSTTVGVSEEE 132
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQG-------------AGMN----------- 391
+R + G + +++ SN+RLV++IA Y+ GM+
Sbjct: 133 VRNEIERGRRARARLVASNLRLVLAIANRYKSRAVVRSAWKSRSKGGMDMPSHEKVRLQR 192
Query: 392 -----LQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
L DL+QEG GL+R AEKFD SKGFKFSTYA WWI+QA+++ +S+ SRTIRLP
Sbjct: 193 QHNIFLGDLIQEGALGLIRAAEKFDPSKGFKFSTYATWWIRQAIQRCVSEHSRTIRLP 250
>gi|270283843|ref|ZP_05965086.2| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
gi|270277549|gb|EFA23403.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
gallicum DSM 20093]
Length = 485
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE +FA+
Sbjct: 184 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----SFAR----- 233
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 234 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 290
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 291 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 326
>gi|357389445|ref|YP_004904284.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311895920|dbj|BAJ28328.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 389
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/181 (43%), Positives = 108/181 (59%), Gaps = 26/181 (14%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAA 348
+D LR YLR RLLTA EE++L+ I+ L E L V P A+ A
Sbjct: 84 ADLLRQYLR-EIGRVRLLTAVEEVELARAIEAGLFAEEALDRV--------PPAAERRPA 134
Query: 349 AGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
D+R +L R + G + K ++I +N+RLV+S+AK Y G G+ L DL+QEG GL+R
Sbjct: 135 ---DERLLGDLDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTLLDLIQEGNVGLIR 191
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP---------VISHGRGNLQSE 456
EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+P V+ RG LQ
Sbjct: 192 AVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVLRVQRGLLQER 251
Query: 457 G 457
G
Sbjct: 252 G 252
>gi|260436706|ref|ZP_05790676.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260414580|gb|EEX07876.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 377
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 22/162 (13%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI- 364
LL E + A I +L +LE L+ + + PT +WA AAG+ +L++R+ G
Sbjct: 55 LLQQRELAESDAAIGELHRLEELQRREANQHSHWPTKQEWARAAGLPLPDLQQRIELGYQ 114
Query: 365 ---------------------LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
KD MI +N+RLV+++AK YQ GM + DLVQEG GL
Sbjct: 115 AWAEQAQLEAKDVKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTLGL 174
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 175 ERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 216
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/100 (59%), Positives = 75/100 (75%), Gaps = 4/100 (4%)
Query: 347 AAAGVDQRELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
AA VD L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+QEG GLVR
Sbjct: 114 AAEEVD---LAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVR 170
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
AEKFD KGFKFSTYA WWI+QA+ ++L+D++RTIR+PV
Sbjct: 171 AAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPV 210
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 101/163 (61%), Gaps = 16/163 (9%)
Query: 284 SVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
V+ + DP+R YLR + LLTA EE+ L+ ++ G E SER
Sbjct: 96 DVESMGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQVE-----RG--EQASERL------ 141
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
Q A ++ +L R + G ++++I +N+RLV+SIAK Y G GM+L DL+QEG G
Sbjct: 142 -QKGDYAPSERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIG 200
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KG+KFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 201 LMRATEKFDYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPV 243
>gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
gi|17135717|dbj|BAB78263.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120]
Length = 316
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 97/155 (62%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD +R LLT+++E+ + +Q ++ L+ + L+++ PT + A
Sbjct: 6 SDLVRIYLQEIGQFPLLTSDQEITYARLVQQMIALQEQQHELTQKLEREPTTLELANFLN 65
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ ++ + L G K KMIT+N+RLV+SIAK YQ + DLVQEG GL RG EKF
Sbjct: 66 KTEAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKF 125
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+K STYA+WW+ QA+ ++++++SRT+RLP+
Sbjct: 126 DPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPI 160
>gi|427704523|ref|YP_007047745.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427347691|gb|AFY30404.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 306
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ L +Q ++ L +ERC GGS A D E +R L
Sbjct: 16 QLLTPEQELTLGRKVQAMVSL-------NERCAQAGGS------GPACEFDDLE-KRTLR 61
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K +M+T+N+RLV+++AK YQG G++L DL+QEG GL R EKFD ++G +FSTY
Sbjct: 62 NGERAKQQMVTANLRLVVNLAKRYQGKGLDLLDLIQEGTIGLTRAVEKFDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 94/154 (61%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+ + T + EE++LS IQ L ++ R+ ++ G P+ A A +
Sbjct: 50 DPVDHYLNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQI 109
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
LR R+ G + K+I +N+RLV+S+AK Y G+ DL+QEG GL+R EKF+
Sbjct: 110 SVSTLRSRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFN 169
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
A +GF+FSTYAHWWI+Q + + +++Q+RTIRLPV
Sbjct: 170 AERGFRFSTYAHWWIRQGITRCIANQARTIRLPV 203
>gi|78214100|ref|YP_382879.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78198559|gb|ABB36324.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 377
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 75/104 (72%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
+ WA A ++ ++L+ L G KD MI +N+RLV+++AK YQ GM + DLVQEG
Sbjct: 113 YQAWAEQAQLEAKDLKLALRNGRRAKDHMIQANLRLVVAVAKKYQQRGMEILDLVQEGTL 172
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL R EKFD ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 173 GLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 216
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 93/140 (66%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E G P+ + ++ + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMQVERAELEIIELTGDKPSIEELSSKLNLSIPIIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 169 IRQGITRAIAEKSRAIRLPI 188
>gi|123968168|ref|YP_001009026.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123198278|gb|ABM69919.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. AS9601]
Length = 307
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G+ L DL+QEG GL R EK+D S+G +FSTY
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTY 120
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 121 AYWWIRQGLNRALSTQSRTIRIPV 144
>gi|453073916|ref|ZP_21976714.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
gi|452765402|gb|EME23659.1| RNA polymerase sigma factor SigB [Rhodococcus triatomae BKS 15-14]
Length = 323
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 17/176 (9%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
S +T+RR RP+ +++D P +R + LLTA +E++L+ I+ L +
Sbjct: 3 SPTTTRRARPTAEDLDAQSPSADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAAHVL 62
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E +R S +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 63 ET-GKRLSASK------------KRDLAAIVRDGEAARRHLLEANLRLVVSLAKRYTGRG 109
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 110 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|33862619|ref|NP_894179.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33634535|emb|CAE20521.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 313
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 22/173 (12%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSL------- 51
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
++ +P ++ RR + G K++M+ +N+RLV+S+AK YQG G+ L
Sbjct: 52 TQDGSVAPDDKEFTTHQ-------RRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLEL 104
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 105 LDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|172037252|ref|YP_001803753.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|354553864|ref|ZP_08973170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171698706|gb|ACB51687.1| group 2 sigma-70 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
gi|353554581|gb|EHC23971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 297
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 97/154 (62%), Gaps = 21/154 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ + + LL+ EE++L+ IQ +L L +E LS
Sbjct: 8 DTVRHYLQSIGKTPLLSGPEEIKLAEEIQAMLPLLE-KEALS------------------ 48
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+E + + G +DKMI +N+RLV+SIAK Y +G++L DL+QEG GL+RG EKFD
Sbjct: 49 --KEEEKIVAKGQRARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFD 106
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
S+G+KFSTYA+WWI+Q + +++++QSRTIRLP+
Sbjct: 107 PSRGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|119487601|ref|ZP_01621211.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
gi|119455770|gb|EAW36906.1| RNA polymerase sigma-like factor [Lyngbya sp. PCC 8106]
Length = 404
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 85/139 (61%), Gaps = 22/139 (15%)
Query: 329 REVLSERCGGSPTFAQWAAAAGVDQRELR-------RRL---------------NYGILC 366
R L + G SP+ +WAA +GV+ +L+ RR GI
Sbjct: 106 RSRLVAQLGHSPSLERWAAVSGVEVSDLKPIIAAGKRRWAELAELTVEELDQVQTEGIKA 165
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
KD MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD ++G++FSTY++WWI
Sbjct: 166 KDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYWWI 225
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+Q + ++++ QSRTIRLPV
Sbjct: 226 RQGITRAIATQSRTIRLPV 244
>gi|126695941|ref|YP_001090827.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126542984|gb|ABO17226.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 307
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G+ L DL+QEG GL R EK+D S+G +FSTY
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTY 120
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 121 AYWWIRQGLNRALSTQSRTIRIPV 144
>gi|365862000|ref|ZP_09401757.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
gi|364008482|gb|EHM29465.1| putative RNA polymerase principal sigma factor [Streptomyces sp.
W007]
Length = 363
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR + LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIT-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 205
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
Query: 355 ELRRRLNYGIL-CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
+L +R+ G L K KM+ SN+RLV+SIAKNY+ G+ DL+QEG GLVR AEKFD
Sbjct: 119 DLAKRIERGDLDAKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYR 178
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KGFKFSTYA WWI+QA+ ++L+D++RTIR+PV
Sbjct: 179 KGFKFSTYATWWIRQAIARALADKARTIRIPV 210
>gi|291439967|ref|ZP_06579357.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
gi|291342862|gb|EFE69818.1| transcription initiation factor sigma [Streptomyces ghanaensis ATCC
14672]
Length = 335
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 14/150 (9%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR S RLLTA +E++L+ I+ L E L L+E P + +RE
Sbjct: 40 YLR-LISRVRLLTAEQEVELAKRIEAGLYAERL---LAEEPVLEPRY----------RRE 85
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L G K+ + +N+RLV+S+AK Y G G+ DL+QEG GL+R EKFD +KG
Sbjct: 86 LGLLAEDGRRAKNHLTEANLRLVVSVAKRYTGRGLQFMDLIQEGNAGLIRAVEKFDYTKG 145
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FKFSTYA WWIKQ + ++++DQSRTIR+PV
Sbjct: 146 FKFSTYATWWIKQGITRAMADQSRTIRIPV 175
>gi|310287737|ref|YP_003938995.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
gi|309251673|gb|ADO53421.1| RNA polymerase sigma factor [Bifidobacterium bifidum S17]
Length = 506
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 347
>gi|290960625|ref|YP_003491807.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
gi|260650151|emb|CBG73267.1| Principal sigma factor HrdA [Streptomyces scabiei 87.22]
Length = 387
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 21/159 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G A+
Sbjct: 88 SDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------ERLG---------TAS 130
Query: 350 GVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D R +L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R
Sbjct: 131 GLDTRLALDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRA 190
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 191 VEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 229
>gi|421733382|ref|ZP_16172488.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
gi|407078624|gb|EKE51424.1| RNA polymerase sigma factor [Bifidobacterium bifidum LMG 13195]
Length = 506
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 347
>gi|311064624|ref|YP_003971349.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|421736043|ref|ZP_16174897.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
gi|310866943|gb|ADP36312.1| RNA polymerase principal sigma factor HrdB [Bifidobacterium bifidum
PRL2010]
gi|407296670|gb|EKF16198.1| RNA polymerase sigma factor [Bifidobacterium bifidum IPLA 20015]
Length = 506
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 205 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 248
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 249 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 308
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 309 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 347
>gi|254526924|ref|ZP_05138976.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
gi|221538348|gb|EEE40801.1| sigma-70 factor family protein [Prochlorococcus marinus str. MIT
9202]
Length = 307
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G+ L DL+QEG GL R EK+D S+G +FSTY
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTY 120
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 121 AYWWIRQGLNRALSTQSRTIRIPV 144
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 96/157 (61%), Gaps = 14/157 (8%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
DP+R LLTA EE+ L+ +K+E E G A+ A +
Sbjct: 118 DPVRMYLKEIGKVPLLTAAEEIDLA------MKIEAGVE-----AGEQLEAAEADNAEEL 166
Query: 352 DQRELRR--RLN-YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+RE RR R+ G+ K ++I +N+RLV+SIAK Y G GM DL+QEG GL+R E
Sbjct: 167 SRREHRRLTRIEAVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVE 226
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 227 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 263
>gi|294812504|ref|ZP_06771147.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|294325103|gb|EFG06746.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
Length = 436
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 151 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 198
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 199 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 258
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 259 IRQAMSRALADQARTIRVPV 278
>gi|257064907|ref|YP_003144579.1| sigma-70 family RNA polymerase sigma factor [Slackia
heliotrinireducens DSM 20476]
gi|256792560|gb|ACV23230.1| RNA polymerase sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 314
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 97/159 (61%), Gaps = 17/159 (10%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
D +R YLR LLT EE++L+ Q L E ++E +
Sbjct: 14 GDSIRMYLRDIGKVD-LLTPAEEVELAKKYQTGLAAEAALAQMNE------------GSV 60
Query: 350 GVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
VD+RE R+ L G KDK++ +N+RLV+SIAK Y+G G+ L DLVQEG GL+R
Sbjct: 61 EVDRRECRKLLRVQRAGQEAKDKLVAANLRLVVSIAKKYRGRGLPLLDLVQEGNLGLIRA 120
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFK STYA WWI+QAV ++++D++RTIRLPV
Sbjct: 121 VEKFDYTKGFKLSTYATWWIRQAVTRAIADKARTIRLPV 159
>gi|308233952|ref|ZP_07664689.1| RNA polymerase, sigma 70 subunit, RpoD [Atopobium vaginae DSM
15829]
gi|328943964|ref|ZP_08241429.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
gi|327491933|gb|EGF23707.1| putative DNA-directed RNA polymerase sigma subunit RpoD [Atopobium
vaginae DSM 15829]
Length = 441
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 98/187 (52%), Gaps = 27/187 (14%)
Query: 271 SVKSGSTSRRKRPSVQEVDYS------DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
+ K S R R + +D S DP+R LL A+EE+ L+ IQ
Sbjct: 111 ATKKRSNKRSSRARTRRIDSSAVMLTGDPVRMYLKEIGKVDLLNASEEVHLAMKIQ---- 166
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAG------VDQRELRRRLNYGILCKDKMITSNIRLV 378
G + AA G +QR L R G+ K + ++N+RL
Sbjct: 167 -----------AGTDASKKLEAAENGEIELTRAEQRRLMRIEQVGLDAKQALTSANLRLT 215
Query: 379 ISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 438
+SIAK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+
Sbjct: 216 VSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQA 275
Query: 439 RTIRLPV 445
RTIR+PV
Sbjct: 276 RTIRIPV 282
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 91/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E E G P+ + + + +++RL G
Sbjct: 49 LLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRAGQR 108
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 169 IRQGITRAIAEKSRAIRLPI 188
>gi|124025343|ref|YP_001014459.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123960411|gb|ABM75194.1| Putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. NATL1A]
Length = 307
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 93/143 (65%), Gaps = 17/143 (11%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q ++ L+ERC GG+ ++++A ++R
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGNGPECEYSSAE-------KKRFKA 61
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D +G +FSTYA
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPKRGHRFSTYA 121
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 YWWIRQGLNRALSTQSRTIRIPV 144
>gi|78778962|ref|YP_397074.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78712461|gb|ABB49638.1| putative type II alternative sigma factor, sigma70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 307
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT E+ + +Q+++ VL RC GG +++ A R+++
Sbjct: 15 QLLTPERELTMGRKVQEMV-------VLVNRCQEAGGKGPACEYSEAE-------RKKIK 60
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G+ L DL+QEG GL R EK+D S+G +FSTY
Sbjct: 61 IGEKAKNEMITANLRLVVNLAKRYQGKGLELLDLIQEGTLGLTRAVEKYDPSRGHRFSTY 120
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 121 AYWWIRQGLNRALSTQSRTIRIPV 144
>gi|254389040|ref|ZP_05004270.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
gi|326441042|ref|ZP_08215776.1| RNA polymerase sigma factor [Streptomyces clavuligerus ATCC 27064]
gi|197702757|gb|EDY48569.1| RNA polymerase principal sigma factor hrdA [Streptomyces
clavuligerus ATCC 27064]
Length = 385
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 12/140 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P AA +D R + G +
Sbjct: 100 LLTAAEEVELARRVEAGLFAE-------EKLAATPDLNSSRLAADLD-----RLVVMGRM 147
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 148 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYTRGYKFSTYATWW 207
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 208 IRQAMSRALADQARTIRVPV 227
>gi|124023660|ref|YP_001017967.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123963946|gb|ABM78702.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 313
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 100/173 (57%), Gaps = 22/173 (12%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
KS T RR+ SDP+ + T LLT EE++L +Q ++ L
Sbjct: 7 KSAETQRRR--------SSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSL------- 51
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
++ +P ++ RR + G K++M+ +N+RLV+S+AK YQG G+ L
Sbjct: 52 TQDGSVAPDDKEFTTHQ-------RRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLEL 104
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL R EKFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 105 LDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR R++ AN I L+L ++E L+ G P+ +WAA A +
Sbjct: 89 RYLRM-----RIVLANAAKLGDEVIIPYLRLVEVQERLTSELGHRPSLERWAATADIVLS 143
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+LR L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLRPTLANGKRRWAEIAKLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|313140538|ref|ZP_07802731.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
gi|313133048|gb|EFR50665.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
NCIMB 41171]
Length = 500
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 341
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 9/140 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P G+ R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------GIHHRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 351 IRQAITRAMADQARTIRIPV 370
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 95/157 (60%), Gaps = 18/157 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
SDP+ + +T LLT EE++L +Q ++ L +G +V SE
Sbjct: 17 SDPISWYLSTIGRVPLLTPAEEIELGNQVQVMMNLTEDGSIDVKSEEFTSHQ-------- 68
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R E
Sbjct: 69 --------RRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVE 120
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 121 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 92 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 135
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 136 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 195
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 196 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|86742187|ref|YP_482587.1| sigma 38 [Frankia sp. CcI3]
gi|86569049|gb|ABD12858.1| sigma 38 [Frankia sp. CcI3]
Length = 422
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 8/97 (8%)
Query: 355 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 170 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 227
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 228 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 264
>gi|156740438|ref|YP_001430567.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156231766|gb|ABU56549.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 405
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
Query: 285 VQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
V + DP+R YLR + LLTA EE+ L+ + ER +
Sbjct: 101 VDGIGVDDPVRVYLREIGRVN-LLTAQEEIMLAQQV--------------ERGEQANERL 145
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
Q V++ +L R + G ++++I +N+RLV+SIAK Y G GM+L DL+QEG GL
Sbjct: 146 QNGDYTPVERLQLHRWVQEGQAARERLIQANLRLVVSIAKKYLGRGMSLLDLIQEGNIGL 205
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KG+KFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 206 MRATEKFDYRKGYKFSTYATWWIRQAITRVIADQSRTIRLPV 247
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 74/102 (72%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL
Sbjct: 179 RWAEIAGLTVEQLEQIQTQGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGL 238
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 239 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 280
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 286 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 336
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 337 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 396
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 397 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 431
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+R LLTA EE+ L+ I+ G + A A
Sbjct: 109 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIE----------------AGLFASEKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|408500874|ref|YP_006864793.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
gi|408465698|gb|AFU71227.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
Length = 474
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + E
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGE--------------- 216
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 217 GMDFKRRRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 276
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 277 VEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRVPV 315
>gi|443627733|ref|ZP_21112109.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
gi|443338746|gb|ELS53012.1| putative RNA polymerase sigma factor [Streptomyces
viridochromogenes Tue57]
Length = 430
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ G +P A +L R + G +
Sbjct: 146 LLTAAEEVELARRVEAGLFAE-------EKLGNTPDLDSELAL------DLDRLVVMGRM 192
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 193 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 252
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 253 IRQAMSRALADQARTIRVPV 272
>gi|218439766|ref|YP_002378095.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172494|gb|ACK71227.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 418
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/101 (52%), Positives = 73/101 (72%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA AG+ +EL + GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 158 WANLAGLKVQELEQIQKAGIEAKNHMIKANLRLVVSVAKRYQNRGLELLDLIQEGTLGLE 217
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 218 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRIIRLPV 258
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+ +E+ L +Q+ +++E + E P+ + A + ++++RL G
Sbjct: 38 LLSHEQEITLGRQVQEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQR 97
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++M+ +N+RLV+S+AK Y M L DL+QEG GLVRG EKFD ++G+KFSTYA+WW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + ++++++SR IRLP+
Sbjct: 158 IRQGITRAIAEKSRAIRLPI 177
>gi|218438398|ref|YP_002376727.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171126|gb|ACK69859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 295
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 68/82 (82%)
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G K KMI++N+RLV+SIAK YQ G++ DL+QEG GL+RG EKFD SKG+KFSTYA
Sbjct: 57 GKRAKRKMISANLRLVVSIAKKYQRRGLSFLDLIQEGSIGLIRGVEKFDPSKGYKFSTYA 116
Query: 423 HWWIKQAVRKSLSDQSRTIRLP 444
+WWI+QA+ ++++DQSRTIRLP
Sbjct: 117 YWWIRQAMTRAIADQSRTIRLP 138
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 76/97 (78%), Gaps = 1/97 (1%)
Query: 350 GVD-QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
G D +R+L++ + G K +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 168 GTDLRRDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 227
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 228 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 264
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 75/102 (73%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+WA AG+ +EL + + G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 156 RWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 215
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 216 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 257
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER PT AQ +R++ G
Sbjct: 288 LLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT-AQ--------RRDMMWICRDGDR 338
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 339 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 398
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 399 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 433
>gi|254430393|ref|ZP_05044096.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197624846|gb|EDY37405.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 302
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 17/143 (11%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q + VL ERC GG A D RE +R L
Sbjct: 13 LLTPEQELTLGRKVQAM-------AVLQERCREAGGQ------GPACEYDDRE-KRVLRL 58
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G K++MIT+N+RLV+++AK YQ G++L DL+QEG GL R EK+D ++G +FSTYA
Sbjct: 59 GERAKNQMITANLRLVVNLAKRYQNKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTYA 118
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
+WWI+Q + ++LS QSRTIR+PV
Sbjct: 119 YWWIRQGLNRALSTQSRTIRIPV 141
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + +T LLTA EE++L +Q ++ GS F
Sbjct: 17 SDPVSWYLSTIGRIPLLTAAEEIELGNQVQAMMAFTE---------DGSKDFK----VED 63
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+ ++ RR L G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 64 LTTKQ-RRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RVVLANAAKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|386840029|ref|YP_006245087.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100330|gb|AEY89214.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793323|gb|AGF63372.1| RNA polymerase sigma factor [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 374
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 19/168 (11%)
Query: 283 PSVQEVDYSDP-----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
P+V V+ P +YLR LLTA EE++L+ ++ L E E+ G
Sbjct: 63 PAVARVESGGPSADLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLG 114
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
+P A ++L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQ
Sbjct: 115 TTPDLDSELA------QDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQ 168
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EG GL+R EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 169 EGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 216
>gi|312195044|ref|YP_004015105.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226380|gb|ADP79235.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 424
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 92/147 (62%), Gaps = 20/147 (13%)
Query: 317 AGIQDLLKLEGLREV-------------LSERCGGSPTFAQWAAAAGVD-----QRELRR 358
AG DL+++ LRE+ LS+R FA+ A D R+L+
Sbjct: 122 AGTADLVRMY-LREIGRVPLLNAAQEVELSKRVEAG-LFAEHKLATAADLEPELHRDLKL 179
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
+ G K +++++N+RLV+S+AK Y G GM L DLVQEG GL+R EKFD +KG+KF
Sbjct: 180 LVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKF 239
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPV 445
STYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 240 STYATWWIRQAIGRALADQARTIRIPV 266
>gi|226357433|ref|YP_002787172.1| sigma-70 family RNA polymerase sigma factor [Deinococcus deserti
VCD115]
gi|226319423|gb|ACO47418.1| putative RNA polymerase sigma factor, sigma-70 family [Deinococcus
deserti VCD115]
Length = 363
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 96/159 (60%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
+DP+R LLT EE+ L+ AG + +LE E L ER
Sbjct: 60 NDPVRQYLHEIGRVPLLTVTEEIDLARRMEAGQEARTQLETEHE-LGER----------- 107
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++R L+R + G K ++I +N+RLV+SIAK Y GM L DL+QEG +GL+RG
Sbjct: 108 -----ERRRLQRTVEDGEHAKQQLIEANLRLVVSIAKKYANRGMGLLDLIQEGNQGLIRG 162
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
AEKF+ +GFKFSTYA WWI+QAV ++++DQ+R IR+PV
Sbjct: 163 AEKFEYRRGFKFSTYATWWIRQAVNRAIADQARNIRIPV 201
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 134 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 193
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 194 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 227
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 22/154 (14%)
Query: 314 QLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG---VDQR---------------- 354
Q S ++ + L R+ L+ G P+ +WA AG VD +
Sbjct: 130 QASGPLERYVHLMDTRDRLTSHLGHRPSLERWAETAGISVVDLKPTLSSGKRHWAELASL 189
Query: 355 ---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
EL + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD
Sbjct: 190 TVAELEEAIREGLRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFD 249
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 250 PTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 283
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 73/101 (72%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA AG+ +L + G+ K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 162 WAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLE 221
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 222 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 262
>gi|411007263|ref|ZP_11383592.1| RNA polymerase principal sigma factor [Streptomyces globisporus
C-1027]
Length = 363
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAV- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 205
>gi|374992526|ref|YP_004968021.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
gi|297163178|gb|ADI12890.1| RNA polymerase sigma factor [Streptomyces bingchenggensis BCW-1]
Length = 336
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 97/164 (59%), Gaps = 25/164 (15%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V +DP++ + RLLTA +E+ L+ I+ L E L L ER
Sbjct: 33 VGSTDPVKDYLKLIARVRLLTAEQEVDLAKRIEAGLYAERL---LRER------------ 77
Query: 348 AAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
G+D+ R G L +D ++ +N+RLV+S+AK Y G G+ DL+QEG
Sbjct: 78 -PGLDRHS---RGELGALAEDGHRAKTHLVEANLRLVVSVAKRYTGRGLAFLDLIQEGNT 133
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R AEKFD +KGFKFSTYA WWIKQAV ++L+DQSRTIR+PV
Sbjct: 134 GLIRAAEKFDYAKGFKFSTYATWWIKQAVSRALADQSRTIRVPV 177
>gi|229491301|ref|ZP_04385127.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070914|ref|ZP_21974141.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
gi|226185408|dbj|BAH33512.1| RNA polymerase sigma factor SigB [Rhodococcus erythropolis PR4]
gi|229321840|gb|EEN87635.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452759997|gb|EME18340.1| RNA polymerase sigma factor SigB [Rhodococcus qingshengii BKS
20-40]
Length = 323
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 17/176 (9%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
S ST+ R RPS ++D P +R + LLTA +E++L+ I+ GL
Sbjct: 3 SPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIE-----AGLY 57
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G T A+ +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 ASHVLATGKRLTVAK--------KRDLATIVREGQSARSHLLEANLRLVVSLAKRYTGRG 109
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 110 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|182438860|ref|YP_001826579.1| RNA polymerase principal sigma factor [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326779516|ref|ZP_08238781.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|178467376|dbj|BAG21896.1| putative RNA polymerase principal sigma factor [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326659849|gb|EGE44695.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 363
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLAGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 205
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 242
>gi|390937151|ref|YP_006394710.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
gi|389890764|gb|AFL04831.1| RNA polymerase principal sigma factor [Bifidobacterium bifidum
BGN4]
Length = 500
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 98/159 (61%), Gaps = 20/159 (12%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S+
Sbjct: 199 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESD--------------- 242
Query: 350 GVD---QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
G+D +REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 243 GMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 303 VEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 341
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 242
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 67/83 (80%)
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G+L K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 84 GVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYA 143
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
WWI+QA+ + ++DQSRTIRLPV
Sbjct: 144 TWWIRQAITRGMADQSRTIRLPV 166
>gi|119512139|ref|ZP_01631231.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
gi|119463229|gb|EAW44174.1| RNA polymerase sigma-like factor [Nodularia spumigena CCY9414]
Length = 442
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + +E+ + L L ++E L+ G P+ +WA AG++
Sbjct: 115 RYLRMRTVLADAAKEGDEI-----VAPFLNLVQVQERLTSELGHRPSLERWANTAGIELV 169
Query: 355 ELRRRL----------------------NYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 170 DLKPTLANGKRRWAEIAQLTVEELEQVQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 229
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 230 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 282
>gi|365842430|ref|ZP_09383441.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
gi|364575646|gb|EHM53025.1| RNA polymerase sigma factor RpoD [Flavonifractor plautii ATCC
29863]
Length = 453
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 145 DDPVRMYLKEIGKVNLLTPDEEIQLAQDMGAGDAAK-EQMEELEQARKNGEEVSLTEEEE 203
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ E
Sbjct: 204 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE 258
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 259 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 295
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 97/165 (58%), Gaps = 17/165 (10%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ--DLLKLEGLREVLSERCGGSP 340
P + ++ + DP+R LLTA +E++L+ ++ D+ + RE +
Sbjct: 84 PDLTDIAFDDPVRMYLQEIGQVPLLTAEKEVELAKSMEAGDIARQRIDREEYT------- 136
Query: 341 TFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
+G ++ EL R G + +I +N+RLV+SIAK Y G+ + DLVQEG
Sbjct: 137 --------SGRERMELERAYALGCESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGN 188
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 189 IGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 233
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 149 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 208
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 209 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 242
>gi|357399796|ref|YP_004911721.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355832|ref|YP_006054078.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|337766205|emb|CCB74916.1| RNA polymerase principal sigma factor hrdD [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365806340|gb|AEW94556.1| RNA polymerase principal sigma factor [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 326
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 74/99 (74%)
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+A G + ELR ++ G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 70 SAEGATEEELRALVDAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 129
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 130 VEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 168
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 6/156 (3%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLE-GLREVLSERCGGSPTFAQWAAAA 349
DP+R LLT +EE+ L+ + + E L+E+ +R G P A A
Sbjct: 170 DDPVRMYLKEIGKVPLLTPDEEVDLAQRMASGAEAERKLKELTGQREAGDPAAATKEEEA 229
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
L++ L+ G K K+ +N+RLV+SIAK Y G GM DL+QEG GL++ EK
Sbjct: 230 -----ALKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEK 284
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 285 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 320
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 10/203 (4%)
Query: 244 IAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE--VDYSDPLRYLRATT 301
+ V+S ++ E K RR R A + S+ + QE + +S L T
Sbjct: 197 VVVQSSKKKENKTRRKREFVSTAVSSQSLTLKAN--------QEDLLGFSASLVKRAPNT 248
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
+ R+L A E ++S G++ L +LE +R + E + + WA A+GVD++ L++ L+
Sbjct: 249 KNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLH 308
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G C+D++I S LV+ +A+ Y+G G+ L DL+Q G G+++GAE+FD+++G+KFSTY
Sbjct: 309 RGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTY 368
Query: 422 AHWWIKQAVRKSLSDQSRTIRLP 444
+WI++++ + ++ +R I +P
Sbjct: 369 VQYWIRKSILRVVARYARGIVIP 391
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 96/173 (55%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQ- 353
RYL+ R++ AN Q L L ++E L+ G P+ +WAA AG++
Sbjct: 89 RYLKL-----RIVLANAVKQGDEVATPYLHLIEVQERLASELGHRPSLERWAATAGINLC 143
Query: 354 ---------------------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
EL + + G+ K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 20/196 (10%)
Query: 256 ARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
A+ T EK A + V + R+ R + +D +R LL A EE++
Sbjct: 150 AKETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 209
Query: 315 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 369
L+ I+ L E LR ++ G T AQ +R LN+ G K+
Sbjct: 210 LAKRIEAGLFATERLRRIME--SGEKITTAQ------------KRDLNWISRDGNRAKNH 255
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 256 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 315
Query: 430 VRKSLSDQSRTIRLPV 445
+ ++++DQ+RTIR+PV
Sbjct: 316 ITRAMADQARTIRIPV 331
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 3/149 (2%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF---AQWAAAAGVDQRELRRR 359
S RLL A+EE+ L+ +Q L E +R L E G + A WA A V +LR
Sbjct: 67 SGRLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAA 126
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
+ G+ + + ++N+RLV+SIAK Y+ G+ +DL+QEG GL R E+FD +GF+FS
Sbjct: 127 RSRGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQEGAFGLSRAVERFDPERGFRFS 186
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPVISH 448
TYA +WI+QAV ++ ++QSR IRLP H
Sbjct: 187 TYATFWIRQAVLRACAEQSRVIRLPAHVH 215
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 353 QRELRRRLNYG-ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
+REL RR G K+K+ITSN+RLV+SIAK Y G G++ QDL+QEG GL++ EKFD
Sbjct: 141 ERELARRAQMGDKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFD 200
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 201 WRKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|25991936|gb|AAN76995.1|AF481769_1 primary sigma 70 transcriptional factor [Frankia sp. ACN14a]
Length = 385
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 8/97 (8%)
Query: 355 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 133 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 190
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 191 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 227
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 95/163 (58%), Gaps = 18/163 (11%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P Q SDP+ + T LLT EE++L +Q +++L + P+
Sbjct: 8 PREQRRRGSDPISWYLGTIGRVPLLTPAEEIELGNQVQAMMQL------IDSGVEDPPSL 61
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
Q ++ L G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG G
Sbjct: 62 RQ------------KQLLRLGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLG 109
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L R EKFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 110 LERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 152
>gi|224146103|ref|XP_002325882.1| predicted protein [Populus trichocarpa]
gi|222862757|gb|EEF00264.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
Y++ S +L E ++LS I+ L E + L ER G P+ Q A + + + +
Sbjct: 197 YVKGVVSDE-VLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEPSDEQIADSLRISRAD 255
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L+ +L L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKG
Sbjct: 256 LQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGLIGLLRGIEKFDSSKG 315
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
FK STY +WWI+Q V ++L D SRT+RLP H R L
Sbjct: 316 FKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGL 353
>gi|111225055|ref|YP_715849.1| alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
gi|111152587|emb|CAJ64329.1| Alternative primary sigma 70 transcriptional factor [Frankia alni
ACN14a]
Length = 373
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 8/97 (8%)
Query: 355 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 121 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 178
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 179 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 215
>gi|212715646|ref|ZP_03323774.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661013|gb|EEB21588.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 448
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 147 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQMD----FKR----- 196
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 197 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 253
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 254 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 289
>gi|291444398|ref|ZP_06583788.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
gi|291347345|gb|EFE74249.1| RNA polymerase principal sigma factor hrdA [Streptomyces
roseosporus NRRL 15998]
Length = 395
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E ER G+P A +L R + G
Sbjct: 111 LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG------DLDRLVVMGRT 157
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 158 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 217
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 218 IRQAMSRALADQARTIRVPV 237
>gi|294786990|ref|ZP_06752244.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
gi|294485823|gb|EFG33457.1| RNA polymerase sigma (70) factor RpoD [Parascardovia denticolens
F0305]
Length = 403
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 100 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 150
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 151 --KRELKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 208
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 209 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 243
>gi|373118497|ref|ZP_09532625.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666996|gb|EHO32129.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
7_1_58FAA]
Length = 448
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 92/157 (58%), Gaps = 8/157 (5%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS--AGIQDLLKLEGLREVLSERCGGSPTFAQWAAA 348
DP+R LLT +EE+QL+ G D K E + E+ R G
Sbjct: 140 DDPVRMYLKEIGKVNLLTPDEEVQLAQDMGAGDAAK-EQMEELEQARKNGEEVSITEEEE 198
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
ELRR + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++ E
Sbjct: 199 K-----ELRRLVKRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVE 253
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 254 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 290
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 17/158 (10%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLT +EE M++ AG+ +LE +E G +
Sbjct: 91 DPVRMYLKEIGKVPLLTPSEEVDLAMKIEAGVAATAELEK-----AEEEGVELDRRERRR 145
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
V+Q G+ KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 146 LTRVEQ--------VGLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAV 197
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 198 EKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 235
>gi|383763158|ref|YP_005442140.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383426|dbj|BAM00243.1| RNA polymerase sigma factor SigA [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 441
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 100/156 (64%), Gaps = 8/156 (5%)
Query: 292 DPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
DP+R YLR LLTA EEM+L+ I+ L +E ++ L E GG
Sbjct: 105 DPVRMYLRDIGRHP-LLTAEEEMELAEKIR--LGVEAEKK-LQELFGGRSE--DELTDEE 158
Query: 351 VDQR-ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+DQ+ EL ++ G + ++ SN+RLV+S+AK Y G G+N DL+QEG GL+R +K
Sbjct: 159 LDQKDELEMLVHQGRMAHSRLAQSNLRLVVSVAKRYIGRGLNFLDLIQEGNLGLLRAVDK 218
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD + GFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 219 FDHTLGFKFSTYATWWIRQAISRAIADQARTIRIPV 254
>gi|355576273|ref|ZP_09045605.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
gi|354816925|gb|EHF01437.1| hypothetical protein HMPREF1008_01582 [Olsenella sp. oral taxon 809
str. F0356]
Length = 461
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 92/164 (56%), Gaps = 29/164 (17%)
Query: 292 DPLRYLRATTSSSRLLTANEE----MQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
DP+R LLTA+EE M++ AG + KLE AA
Sbjct: 158 DPVRMYLKEIGKVDLLTASEEVNLAMKIEAGTEASQKLE-------------------AA 198
Query: 348 AAG------VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
G + R L R G+ K +I++N+RL +SIAK Y G GM DL+QEG
Sbjct: 199 DNGEIELTRAEMRRLMRIEQVGLEAKQALISANLRLTVSIAKRYVGRGMLFLDLIQEGNL 258
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 259 GLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 302
>gi|291451171|ref|ZP_06590561.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|291354120|gb|EFE81022.1| RNA polymerase sigma factor [Streptomyces albus J1074]
Length = 397
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 72/92 (78%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD +
Sbjct: 148 RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDYT 207
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+GFKFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 208 RGFKFSTYATWWIRQAMSRALADQARTIRVPV 239
>gi|291295726|ref|YP_003507124.1| RNA polymerase sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
gi|290470685|gb|ADD28104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus ruber
DSM 1279]
Length = 507
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 103/188 (54%), Gaps = 30/188 (15%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLS-------AGIQDL-----LKLEGLREVLSER 335
+ SDP+R LLT EE+ L+ A Q L L E +R VL +
Sbjct: 159 ISTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEEGVAAAQRLAEETGLDAELIRHVLRSQ 218
Query: 336 CGGSPTFAQWAAA---------AGVD------QRELRRRLNY---GILCKDKMITSNIRL 377
GS A A VD RE++R L+ G +C+ +I +N+RL
Sbjct: 219 VQGSSRVASIPGTDLRIDPETIAAVDARLRALPREVKRYLHIARDGEICRQHLIEANLRL 278
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
V+SIAK Y G G++ DL+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ
Sbjct: 279 VVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEFKRRFKFSTYATWWIRQAINRAIADQ 338
Query: 438 SRTIRLPV 445
+RTIR+PV
Sbjct: 339 ARTIRIPV 346
>gi|119026029|ref|YP_909874.1| RNA polymerase sigma factor [Bifidobacterium adolescentis ATCC
15703]
gi|118765613|dbj|BAF39792.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
adolescentis ATCC 15703]
Length = 479
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 178 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 227
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 228 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 285
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 286 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 320
>gi|154488794|ref|ZP_02029643.1| hypothetical protein BIFADO_02101 [Bifidobacterium adolescentis
L2-32]
gi|154082931|gb|EDN81976.1| RNA polymerase sigma factor RpoD [Bifidobacterium adolescentis
L2-32]
Length = 478
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ LS I+ L + L + S++ F +
Sbjct: 177 ADPVKDYLKQIGRVNLLNAEQEVDLSERIEAGLYAQHLLDTESDKM----DFKR------ 226
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 227 --RRELKWAANDGKRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 284
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 285 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 319
>gi|420236839|ref|ZP_14741316.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
gi|391879942|gb|EIT88442.1| RNA polymerase sigma factor [Parascardovia denticolens IPLA 20019]
Length = 624
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 91/155 (58%), Gaps = 11/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP++ LL A +E+ LS I+ L + L L TF +
Sbjct: 321 SDPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTPADQMTFQR------ 371
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+R L+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 372 --KRGLKWAANDGRKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 429
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 430 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 464
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 97/160 (60%), Gaps = 23/160 (14%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE+ L+ I+ L E LR+V E SP ++RR LN+
Sbjct: 162 LLNAEEEVDLAKRIEAGLYGSERLRQVEEEGQKISP--------------QMRRDLNWIV 207
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 208 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 267
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
YA WWI+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 268 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 307
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 94/160 (58%), Gaps = 25/160 (15%)
Query: 308 TANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELR---------- 357
TA++E + IQ +KL + L+ G P+ +WA AGV +L+
Sbjct: 98 TADKE---AGAIQQYVKLIEAHDRLTAHLGHRPSLERWATEAGVTVADLKPIMAEGKREW 154
Query: 358 ---RRLNY---------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+L+ GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R
Sbjct: 155 AKVAKLSVEELETIQMEGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLER 214
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 215 AVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 254
>gi|398786196|ref|ZP_10548973.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
gi|396993817|gb|EJJ04874.1| RNA polymerase sigma factor [Streptomyces auratus AGR0001]
Length = 385
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P + A
Sbjct: 86 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLTNTPDLSTRLAV- 136
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 137 -----DLDRLVVLGRMAKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 191
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 192 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 227
>gi|299115565|emb|CBN75768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ectocarpus
siliculosus]
Length = 244
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 299 ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRR 358
A ++LLT EE +L IQ L+ G R+ L+ G +PTF++WA + + EL
Sbjct: 15 AELCQAKLLTRAEEYELGTKIQTLMGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEE 74
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
L G K M+ +N+R+VISIA+ YQ G+ L DL+QEG GLVR EKFD +GFK
Sbjct: 75 SLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKL 134
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPVISHGRG 451
STY+ WWI+QA+ K + + R ++P G G
Sbjct: 135 STYSAWWIQQAIFKVRAGR-REAKVPAADRGDG 166
>gi|284991968|ref|YP_003410522.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284065213|gb|ADB76151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 327
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 97/168 (57%), Gaps = 14/168 (8%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
S R+ P + +D +R T + LLTA +E++LS I+ L E L L+ER
Sbjct: 16 SSRREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELSKRIEAGLYAERL---LTERQL 72
Query: 338 GSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQ 397
+P + A D G K ++ +N+RLV+S+AK Y G GM DL+Q
Sbjct: 73 -TPALQRDYKALAAD----------GKAAKRHLLEANLRLVVSVAKRYTGHGMTFLDLIQ 121
Query: 398 EGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++D RTIRLPV
Sbjct: 122 EGNVGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADSGRTIRLPV 169
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 92/156 (58%), Gaps = 15/156 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP+R LLTA EE+ L+ I+ L E L E + A
Sbjct: 93 SDPVRMYLKEIGKVPLLTAEEEVDLAKRIEAGLFAAEKLSEA-----------RRVTVAL 141
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
VD + R G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R EK
Sbjct: 142 RVDLEAVERD---GNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEK 198
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 199 FDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 234
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 72/102 (70%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+WA +EL R GI K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 155 RWAEVVNCSVKELERIQRDGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 214
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 215 ERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 256
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 121/201 (60%), Gaps = 8/201 (3%)
Query: 245 AVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
VR+ ++ ERK RR RAA S+ S +VQ + P R ++SSS
Sbjct: 206 VVRTGKKEERKFRRERAASDNGKKTTSLSLPS------KTVQN-NLPKPTFVKRTSSSSS 258
Query: 305 RL-LTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
R L A E +++ G++ LE +R L E G + + WA A G+D++ L+++L +G
Sbjct: 259 RRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKKVLQQQLQFG 318
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
C+D++I + LV+ IA+NY+G G+ ++DL+Q G GL++GAE+FD ++G++FSTY
Sbjct: 319 WYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTRGYRFSTYVQ 378
Query: 424 WWIKQAVRKSLSDQSRTIRLP 444
+WI++++ K + +R I++P
Sbjct: 379 YWIRKSMLKIVERHARGIQIP 399
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 22/160 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQW 345
+DP++ YL+ S LL A +E+ L+ AG+ KL+ + ++ +
Sbjct: 319 ADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEYKLKNEADSMTAK---------- 367
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
++REL + G L K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 368 ------ERRELHFMASDGQLAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIR 421
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 422 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 461
>gi|325673633|ref|ZP_08153324.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|325555654|gb|EGD25325.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 448
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 90/140 (64%), Gaps = 9/140 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA+EE++LS I+ L L E R A ++R+LR+ + G
Sbjct: 162 LLTADEEVELSRSIEAGLYASHLLEAYPSRT---------TRPAPAERRDLRQIVQDGRS 212
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
+ +MI +N+RLV+S A+NY+G G+++ DLVQEG GL+R EKFD G KFSTYA WW
Sbjct: 213 ARTRMIEANLRLVVSTAQNYEGRGLDMLDLVQEGNTGLIRAVEKFDYRLGNKFSTYATWW 272
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ + ++D+SRTIRLPV
Sbjct: 273 IRQAITRGIADKSRTIRLPV 292
>gi|283783165|ref|YP_003373919.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
gi|283441732|gb|ADB14198.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 409-05]
Length = 489
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 288
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 289 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 330
>gi|153304|gb|AAA26762.1| principal sigma-like factor [Streptomyces aureofaciens]
gi|450077|prf||1920369A RNA polymerase:SUBUNIT=sigma
Length = 393
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 109 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 155
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 156 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 215
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 216 IRQAMSRALADQARTIRVPV 235
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 102/176 (57%), Gaps = 17/176 (9%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
S ST+ R RPS ++D P +R + LLTA +E++LS I+ GL
Sbjct: 3 SPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIE-----AGLY 57
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
G + A+ +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 AAHILETGKRLSPAK--------KRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRG 109
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 110 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 22/146 (15%)
Query: 322 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRR---------------------- 359
LKL + + L+ G PT +WAA +D+ LR++
Sbjct: 91 FLKLIEVHDRLAIELGCRPTMGRWAAEVDLDREVLRQKIREGKQHWAACVDLDIKEIEAV 150
Query: 360 LNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 419
L G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R +KFD +KG++FS
Sbjct: 151 LKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFS 210
Query: 420 TYAHWWIKQAVRKSLSDQSRTIRLPV 445
TYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 211 TYAYWWIRQGITRAIATQSRTIRLPV 236
>gi|336179421|ref|YP_004584796.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334860401|gb|AEH10875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 425
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 93/147 (63%), Gaps = 20/147 (13%)
Query: 317 AGIQDLLKLEGLREV-------------LSERCGGSPTFAQWAAAAGVD-----QRELRR 358
AG DL+++ LRE+ LS+R FA++ D +R+L+
Sbjct: 123 AGTADLVRMY-LREIGKVPLLNAAQEVELSKRVEAG-LFAEYKLDTDTDLAPELRRDLQT 180
Query: 359 RLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF 418
+ G K +++++N+RLV+S+AK Y G GM L DLVQEG GL+R EKFD +KG+KF
Sbjct: 181 LVRDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAKGYKF 240
Query: 419 STYAHWWIKQAVRKSLSDQSRTIRLPV 445
STYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 241 STYATWWIRQAIGRALADQARTIRIPV 267
>gi|75812337|ref|YP_319956.1| sigma-28 [Anabaena variabilis ATCC 29413]
gi|75705093|gb|ABA24767.1| Sigma-28 [Anabaena variabilis ATCC 29413]
Length = 316
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 98/155 (63%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SD +R LLT+++E+ +Q ++ ++ ++ LS++ PT A+ A
Sbjct: 6 SDLIRIYLQEIGQFPLLTSDQEITYGRQVQQMIAIQEQQQQLSQQLHREPTTAELANFLN 65
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
Q ++ + L G K KMIT+N+RLV+SIAK YQ + DLVQEG GL RG EKF
Sbjct: 66 TTQAQVNQILELGQRAKQKMITANLRLVVSIAKKYQRRNLEFLDLVQEGAIGLQRGIEKF 125
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+K STYA+WW+ QA+ ++++++SRT+RLP+
Sbjct: 126 DPNRGYKLSTYAYWWVTQAITRAIAEKSRTVRLPI 160
>gi|315655467|ref|ZP_07908366.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
gi|315490122|gb|EFU79748.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
Length = 553
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 253 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 303
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
REL + G + K+ ++ +N+RLV+++AK Y G GM DL+QEG GL+R EK
Sbjct: 304 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEK 359
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 360 FDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 395
>gi|239987439|ref|ZP_04708103.1| putative RNA polymerase principal sigma factor [Streptomyces
roseosporus NRRL 11379]
Length = 363
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G+P A
Sbjct: 64 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------ERLTGTPDLDSRLAG- 114
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 115 -----DLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 169
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 170 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 205
>gi|297243591|ref|ZP_06927522.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|415709860|ref|ZP_11463439.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
gi|296888342|gb|EFH27083.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis AMD]
gi|388055862|gb|EIK78747.1| RNA polymerase sigma factor [Gardnerella vaginalis 6420B]
Length = 489
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 288
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 289 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 330
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 103/176 (58%), Gaps = 17/176 (9%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
S ST+ R RPS ++D P +R + LLTA +E++LS I+ L +
Sbjct: 3 SPSTTTRIRPSAADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHIL 62
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
E +R SP +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 63 ET-GKRL--SPA----------KKRDLATVVREGQSARAHLLEANLRLVVSLAKRYTGRG 109
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 110 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|433603602|ref|YP_007035971.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
gi|407881455|emb|CCH29098.1| RNA polymerase sigma factor SigB [Saccharothrix espanaensis DSM
44229]
Length = 330
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 23/160 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ-----W 345
+D +R + LLTA EE++L+ I+ + FAQ
Sbjct: 31 ADLVRVYLNGIGKTALLTAAEEVELAKRIE------------------AGVFAQHMLETG 72
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+ A + ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 73 SGPASTRREELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 132
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ + ++DQ RTIRLPV
Sbjct: 133 AVEKFDYTKGFKFSTYATWWIRQAITRGMADQGRTIRLPV 172
>gi|298253932|ref|ZP_06977519.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
gi|297532075|gb|EFH71050.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gardnerella vaginalis 5-1]
Length = 489
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 188 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 228
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 229 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 288
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 289 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 330
>gi|345000232|ref|YP_004803086.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344315858|gb|AEN10546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 333
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 106/190 (55%), Gaps = 21/190 (11%)
Query: 262 AEKAAANVMSVKSGSTSRRK--RPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS--- 316
A +A A S +SG T R R E+ D + + + LL A +E+ LS
Sbjct: 2 ATRAVARRSSAESGGTDRASSVRAGGGEIADRDLVGMYLDEIARTPLLDAAKEVDLSQTI 61
Query: 317 -AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNI 375
AG+ L+G EV SE A G + EL + G KD I SN+
Sbjct: 62 EAGVYAQQILDG--EVESE-------------AGGAKREELEALVAEGERAKDIFIRSNL 106
Query: 376 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435
RLV+++A+ Y AG+ L DL+QEG GLVR EKFD +KGFKFSTYA WWI+QA+ +S++
Sbjct: 107 RLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIA 166
Query: 436 DQSRTIRLPV 445
DQSRTIRLPV
Sbjct: 167 DQSRTIRLPV 176
>gi|379736727|ref|YP_005330233.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
gi|378784534|emb|CCG04203.1| RNA polymerase sigma factor sigB [Blastococcus saxobsidens DD2]
Length = 328
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 98/172 (56%), Gaps = 25/172 (14%)
Query: 280 RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGS 339
R+ P + +D +R T + LLTA +E++L+ I+ L E L L+E+ G +
Sbjct: 18 RREPDTSGLVSTDLVRVYLNTIGKTALLTAEQEVELAKRIEAGLYAERL---LAEQQGLT 74
Query: 340 PTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQ 393
P R+ +Y L D ++ +N+RLV+S+AK Y G GM
Sbjct: 75 PA----------------RKRDYKTLATDGKAAKAHLLEANLRLVVSVAKRYTGHGMTFL 118
Query: 394 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ ++++D RTIRLPV
Sbjct: 119 DLIQEGNVGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADSGRTIRLPV 170
>gi|302525710|ref|ZP_07278052.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434605|gb|EFL06421.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 317
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 23/160 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D +R + LLTA +E++L+ I+ + FAQ
Sbjct: 18 ADLVRVYLNGIGKTALLTAADEVELAKRIE------------------AGVFAQHMLDTA 59
Query: 351 VD-----QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
D ++ELR + G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 60 EDLTPQRRKELRALVRDGHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 119
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLPV
Sbjct: 120 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPV 159
>gi|374853415|dbj|BAL56324.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374857281|dbj|BAL60134.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 334
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Query: 355 ELRRRLNYGILC-KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
EL R+ G C +D++IT+N+RLV+SIAK Y G G++ DL+QEG GL+R EKFD +
Sbjct: 79 ELASRVVAGEKCARDELITANLRLVVSIAKKYMGRGLSFLDLIQEGNLGLMRAVEKFDPT 138
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KGFKFSTYA WWI+QA+ ++++DQSRTIR+PV
Sbjct: 139 KGFKFSTYATWWIRQAITRAIADQSRTIRIPV 170
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 97/157 (61%), Gaps = 18/157 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKL--EGLREVLSERCGGSPTFAQWAAA 348
+DP+ + AT LLT EE++L +Q ++ L +G+ ++E+ +
Sbjct: 17 TDPISWYLATIGRVPLLTPAEEIELGNQVQVMMNLTEDGM---VNEKTKKFTSHE----- 68
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R E
Sbjct: 69 --------RRSIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVE 120
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 121 KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|304389369|ref|ZP_07371334.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327487|gb|EFL94720.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 564
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 264 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 314
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
REL + G + K+ ++ +N+RLV+++AK Y G GM DL+QEG GL+R EK
Sbjct: 315 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEK 370
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 371 FDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 406
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 96/170 (56%), Gaps = 26/170 (15%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-------DLLKLEGLREVLSER 335
P + ++ DP+R LLTA EE+ L+ ++ LL+ +G+ E
Sbjct: 78 PDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAANDTLLQDDGMLE----- 132
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
D+ L+R ++ G + +I +N+RLV+SIAK Y G+ + DL
Sbjct: 133 --------------HSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDL 178
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
VQEG GL+R EKFD +KG KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 179 VQEGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 228
>gi|452822634|gb|EME29651.1| RNA polymerase primary sigma factor [Galdieria sulphuraria]
Length = 601
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 90/139 (64%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL N+ + L+ I+ L R L ++ G P +WA + + EL R L
Sbjct: 265 LLNENQVISLAREIRKLALWNATRIQLRQQYGREPDRVEWAKSLNMSSEELTRNLLRAQR 324
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++ ++ +N+RLV+S+AK + G+++QDL+QEG GL++GAE+FD +GF+FSTYA WW
Sbjct: 325 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRRGFRFSTYAMWW 384
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+QA++++++D SR IR+P
Sbjct: 385 IRQAMQRAIADTSRPIRIP 403
>gi|229817449|ref|ZP_04447731.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229785238|gb|EEP21352.1| hypothetical protein BIFANG_02712 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 482
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + G + F +
Sbjct: 181 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDT----EGDTMDFKR----- 230
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 231 ---KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 287
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 288 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 323
>gi|311111671|ref|YP_003982893.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
gi|310943165|gb|ADP39459.1| DNA-directed RNA polymerase sigma subunit RpoD [Rothia dentocariosa
ATCC 17931]
Length = 468
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ L+ I+ L E L++ P
Sbjct: 169 ADPVKDYLKQIGKVS-LLNAQQEVDLAMRIEAGLYAE---HKLADNPDMDPKL------- 217
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++ELR ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 218 ---KKELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 274
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 275 FDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPV 310
>gi|298346920|ref|YP_003719607.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
gi|298236981|gb|ADI68113.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
Length = 563
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 263 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 313
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
REL + G + K+ ++ +N+RLV+++AK Y G GM DL+QEG GL+R EK
Sbjct: 314 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEK 369
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 370 FDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 405
>gi|159896548|ref|YP_001542795.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159889587|gb|ABX02667.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 400
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 73/90 (81%)
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
LRRR++ G ++ + T+N+RLV+S+AK Y G G++L DL+QEG GL+R EKF+ +KG
Sbjct: 153 LRRRIDRGEQAREHLTTANLRLVVSVAKKYIGRGLSLLDLIQEGNVGLIRAVEKFNYTKG 212
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 213 FKFSTYATWWIRQAITRAIADQARTIRIPV 242
>gi|50954703|ref|YP_061991.1| RNA polymerase sigma factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951185|gb|AAT88886.1| RNA polymerase, sigma-70 family factor [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 440
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE++L+ I+ L E +R +P
Sbjct: 141 ADPVKDYLKQIGKVPLLNAAEEVELAMRIEAGLFAE-------DRLANTPNMP------- 186
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 187 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 243
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 244 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 282
>gi|421739056|ref|ZP_16177384.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|406692448|gb|EKC96141.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 357
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 72/92 (78%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD +
Sbjct: 108 RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDYT 167
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+GFKFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 168 RGFKFSTYATWWIRQAMSRALADQARTIRVPV 199
>gi|300741779|ref|ZP_07071800.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
gi|300380964|gb|EFJ77526.1| RNA polymerase sigma (70) factor RpoD [Rothia dentocariosa M567]
Length = 468
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ L+ I+ L E L++ P
Sbjct: 169 ADPVKDYLKQIGKVS-LLNAQQEVDLAMRIEAGLYAE---HKLADNPDMDPKL------- 217
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++ELR ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 218 ---KKELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 274
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 275 FDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPV 310
>gi|315656627|ref|ZP_07909514.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492582|gb|EFU82186.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 564
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SDP++ YL+ + LL A +E+ LS I+ L E L + E T Q
Sbjct: 264 SDPVKDYLKQIGKVA-LLNAEQEVDLSKRIEAGLYAEHLLKTKQETM----TPKQI---- 314
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
REL + G + K+ ++ +N+RLV+++AK Y G GM DL+QEG GL+R EK
Sbjct: 315 ----RELHYVVQDGQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEK 370
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 371 FDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 406
>gi|359145132|ref|ZP_09178962.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Streptomyces sp. S4]
Length = 357
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 72/92 (78%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
R+LRR + G K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD +
Sbjct: 108 RDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRAVEKFDYT 167
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+GFKFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 168 RGFKFSTYATWWIRQAMSRALADQARTIRVPV 199
>gi|225351336|ref|ZP_03742359.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157680|gb|EEG70963.1| hypothetical protein BIFPSEUDO_02929 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 472
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + S++ F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESDQM----DFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 ---KRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 277
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 278 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 313
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 92/140 (65%), Gaps = 6/140 (4%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L+ ++ +E +RE+ + T Q AA + +++L RL G +
Sbjct: 79 LLKPDEEVELARRVR---FIEEVREL---QASLQATKGQVAAELDMTEKQLESRLYQGRV 132
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K KMI SN+RLV+SIAK Y G+ DL+QEG GL R EKFD KG+KFSTYA+WW
Sbjct: 133 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 192
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++ +RTIRLP+
Sbjct: 193 IRQAITRAIANDARTIRLPI 212
>gi|325283594|ref|YP_004256135.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
gi|324315403|gb|ADY26518.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Deinococcus
proteolyticus MRP]
Length = 487
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQD----LLKLEGLREVLSERCGGSPTFAQWA 346
+DP+R LLT EE+ L+ I+D ++LE E L +R
Sbjct: 184 NDPVRQYLHEIGRVPLLTLEEEIALARRIEDGEFARVELEEKGEELDDRG---------- 233
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+R L+RR+ G + +I +N+RLV+SIAK Y G G+N DL+QEG +GL+R
Sbjct: 234 ------RRALQRRMEDGAAARQGLIEANLRLVVSIAKKYTGRGLNFLDLIQEGNQGLIRA 287
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKF+ + +KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 288 VEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPV 326
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 87/144 (60%), Gaps = 22/144 (15%)
Query: 324 KLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL----------------------N 361
+L ++E L+ G P+ +WA +AG++ EL+ L +
Sbjct: 110 QLMAVQERLTSELGHRPSLERWATSAGIEVAELKPLLIKGKRRWAEITGLTVQELEQIQS 169
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K+ MI +N+RLV+S+AK YQ G+ L DLVQEG GL R +KFD +KG++FSTY
Sbjct: 170 EGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTY 229
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++++ QSRTIRLPV
Sbjct: 230 AYWWIRQGITRAIATQSRTIRLPV 253
>gi|345014897|ref|YP_004817251.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344041246|gb|AEM86971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 414
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 14/151 (9%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
+YLR LL+A EE++L+ ++ L E E+ G +P A
Sbjct: 120 QYLREIGRIP-LLSAVEEVELARRVEAGLFAE-------EKLGNTPDLDSQLAV------ 165
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++
Sbjct: 166 DLDRLVVLGRVAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEKFDYAR 225
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 226 GYKFSTYATWWIRQAMSRALADQARTIRVPV 256
>gi|383808262|ref|ZP_09963813.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
gi|383448918|gb|EID51864.1| RNA polymerase sigma factor RpoD [Rothia aeria F0474]
Length = 491
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ L+ I+ L E L++ P
Sbjct: 192 ADPVKDYLKQIGKVS-LLNAQQEVDLAMRIEAGLYAE---HKLADNPDMDPKL------- 240
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
++ELR ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 241 ---KKELRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 297
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD SKGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 298 FDYSKGFKFSTYATWWIRQAITRAMADQARTIRIPV 333
>gi|40353299|gb|AAR84413.1| alternative primary sigma 70 factor [Frankia sp. ORS020607]
Length = 220
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 75/97 (77%), Gaps = 8/97 (8%)
Query: 355 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+LRR L G+L KD +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 8 DLRRDL--GLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 65
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 66 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 102
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 12/194 (6%)
Query: 254 RKARRTRAAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEE 312
R A TR++++ +A+ V + R+ R + +D +R LL A EE
Sbjct: 128 RVAPTTRSSQQKSADFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEE 187
Query: 313 MQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
++L+ I+ L E +R++ SP +R+LR + G K+ ++
Sbjct: 188 VELAKRIEAGLYGAERIRKLFESNDKLSPQM----------RRDLRWIVRDGERAKNHLL 237
Query: 372 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 431
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+
Sbjct: 238 EANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAIT 297
Query: 432 KSLSDQSRTIRLPV 445
++++DQ+RTIR+PV
Sbjct: 298 RAMADQARTIRIPV 311
>gi|317968274|ref|ZP_07969664.1| putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. CB0205]
Length = 382
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 75/101 (74%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA + + EL++ L+ G +D+MI +N+RLV+++AK YQ GM L DLVQEG GL
Sbjct: 115 WATLSELSIAELKQALHQGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLE 174
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EK+D ++GF+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 175 RAVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 215
>gi|255566078|ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 508
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 93/151 (61%)
Query: 303 SSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY 362
S LL+ E ++LS I+ L LE + L ER G P+ Q A + + + EL+ +
Sbjct: 202 SEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPSDEQVATSLKISRAELQSKSIA 261
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY
Sbjct: 262 CSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFRISTYV 321
Query: 423 HWWIKQAVRKSLSDQSRTIRLPVISHGRGNL 453
+WWI+Q V ++L + SRT+RLP H R L
Sbjct: 322 YWWIRQGVSRALVENSRTLRLPNHLHERLGL 352
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 254 RKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEM 313
+++ +T AA K+ V + R+ R + +D +R LL A EE+
Sbjct: 175 KESSKTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEV 234
Query: 314 QLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKD 368
+L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 235 ELAKRIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKN 280
Query: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+Q
Sbjct: 281 HLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQ 340
Query: 429 AVRKSLSDQSRTIRLPV 445
A+ ++++DQ+RTIR+PV
Sbjct: 341 AITRAMADQARTIRIPV 357
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 108/191 (56%), Gaps = 20/191 (10%)
Query: 261 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 145 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 204
Query: 320 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 374
+ L E LR ++ G T AQ +R LN+ G K+ ++ +N
Sbjct: 205 EAGLFATERLRRMVD--AGEKITTAQ------------KRDLNWISRDGNRAKNHLLEAN 250
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 251 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 310
Query: 435 SDQSRTIRLPV 445
+DQ+RTIR+PV
Sbjct: 311 ADQARTIRIPV 321
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 33/223 (14%)
Query: 223 SADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKR 282
S ++EP E + L++ +Q I + + + + K + A E+ N +SV G
Sbjct: 42 SFEMEPEQFE-EFLDQIEAQGIEMDRKEEADAK---SDAEEQFDLNDLSVPPG------- 90
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
V +DP+R LLT EE+ L+ IQ+ ++ E L+E +P
Sbjct: 91 -----VRINDPVRMYLKEIGRVDLLTGKEEVDLAIRIQESIEAEA---ELAETNEMTPK- 141
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+D +R G K K+ +N+RLV+SIAK Y G GM DL+QEG G
Sbjct: 142 --------IDAAIIR-----GENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMG 188
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L++ EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 189 LIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|260655747|ref|ZP_05861216.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
gi|260629363|gb|EEX47557.1| RNA polymerase major sigma factor [Jonquetella anthropi E3_33 E1]
Length = 969
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 356 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +
Sbjct: 721 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRR 780
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 781 GFKFSTYATWWIRQAITRAIADQARTIRIPV 811
>gi|72381853|ref|YP_291208.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. NATL2A]
gi|72001703|gb|AAZ57505.1| possible type II alternative RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
Length = 307
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 92/143 (64%), Gaps = 17/143 (11%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLNY 362
LLT +E+ L +Q ++ L+ERC GG ++++A +++
Sbjct: 16 LLTPEQELTLGREVQAMV-------ALNERCQQAGGHGPECEYSSAE-------KKKFKA 61
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D +G +FSTYA
Sbjct: 62 GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPKRGHRFSTYA 121
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 YWWIRQGLNRALSTQSRTIRIPV 144
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 108/193 (55%), Gaps = 19/193 (9%)
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 139 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 198
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 372
I+ L E LR +++ G + AQ +R LN+ G K+ ++
Sbjct: 199 RIEAGLFATERLRRMMA--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 244
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 245 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 304
Query: 433 SLSDQSRTIRLPV 445
+++DQ+RTIR+PV
Sbjct: 305 AMADQARTIRIPV 317
>gi|229820409|ref|YP_002881935.1| RNA polymerase sigma factor [Beutenbergia cavernae DSM 12333]
gi|229566322|gb|ACQ80173.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Beutenbergia
cavernae DSM 12333]
Length = 499
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 96/159 (60%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E E L+ GGS F
Sbjct: 200 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ETLA--AGGSMEF-------- 246
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+LRR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 247 ----KLRRELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 302
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 303 VEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 341
>gi|158313089|ref|YP_001505597.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158108494|gb|ABW10691.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 423
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 74/97 (76%), Gaps = 8/97 (8%)
Query: 355 ELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
+LRR L G+L D +++++N+RLV+S+AK Y G GM L DLVQEG GL+R E
Sbjct: 171 DLRRDL--GVLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVE 228
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 229 KFDYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 265
>gi|271966792|ref|YP_003340988.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270509967|gb|ACZ88245.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 331
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 95/150 (63%), Gaps = 13/150 (8%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR + LL+A +E++L+ I+ GL + C G+ Q A + V + E
Sbjct: 37 YLRRIGKVA-LLSAEQEVELARRIE-----AGL---FAAECLGT----QAQAPSTVVRAE 83
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L G+ K+ ++ +N+RLV+SIAK + G GM DL+QEG GL+R AEKFD +KG
Sbjct: 84 LEWLAEDGLRAKNHLLEANLRLVVSIAKRHTGRGMAFADLIQEGNLGLIRAAEKFDYTKG 143
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FKFSTYA WWIKQAV ++L+DQ RTIR+PV
Sbjct: 144 FKFSTYATWWIKQAVTRALADQGRTIRIPV 173
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 26/156 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
DP+R YLR LLTA+EE++L+ + + +ER +P +
Sbjct: 134 DDPVRMYLREIGRVP-LLTAHEEIRLA---------QLMERGKAERLKPAPNY------- 176
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
R ++ G + ++ +N+RLV+S+AK Y G GMNL DL+QEG GL+R EK
Sbjct: 177 --------RYISEGEEAQKRLTEANLRLVVSVAKKYIGRGMNLLDLIQEGNIGLIRAVEK 228
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 229 FDYNKGFKFSTYATWWIRQAITRAIADQARTIRIPV 264
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 105/186 (56%), Gaps = 35/186 (18%)
Query: 274 SGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEG 327
S + S R RP++ E D +D +R + LLTA +E+ LS I+ G
Sbjct: 10 SEARSTRTRPALTEQDLDAQSPSADLVRVYLNGIGRTALLTAEQEVDLSKAIE-----AG 64
Query: 328 L--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVI 379
L + +L+ + SP ++ +Y IL ++ ++ +N+RLV+
Sbjct: 65 LYAKHLLATKKRLSPA----------------KKRDYAILVREGEQARAHLLEANLRLVV 108
Query: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ + ++DQSR
Sbjct: 109 SLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKGYKFSTYATWWIRQAISRGMADQSR 168
Query: 440 TIRLPV 445
TIRLPV
Sbjct: 169 TIRLPV 174
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR V+ G + AQ RR LN+
Sbjct: 201 LLNAEEEVELAKRIEAGLFATERLRRVME--AGEKLSVAQ------------RRDLNWIS 246
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 247 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 306
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 307 YATWWIRQAITRAMADQARTIRIPV 331
>gi|415722105|ref|ZP_11468993.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
gi|388060269|gb|EIK82968.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Bmash]
Length = 434
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 233
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 234 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 275
>gi|148272828|ref|YP_001222389.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830758|emb|CAN01698.1| RNA polymerase principal sigma factor [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 492
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE++L+ I+ L E ++ +P +
Sbjct: 193 ADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------DKLANTPGIS------- 238
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 239 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 295
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 296 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 334
>gi|88809561|ref|ZP_01125068.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786311|gb|EAR17471.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 211
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 95/144 (65%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q + L+ERC GGS +++ D++ + +R
Sbjct: 16 QLLTPEQELTMGRKVQAM-------ATLTERCMLAGGSGPACEYSE----DEKRIIKR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTY
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|238924709|ref|YP_002938225.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
gi|238876384|gb|ACR76091.1| RNA polymerase sigma factor RpoD [Eubacterium rectale ATCC 33656]
Length = 434
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 121 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 180
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 181 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 238
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 239 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPV 276
>gi|302537866|ref|ZP_07290208.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
gi|302446761|gb|EFL18577.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
Length = 481
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
+DP++ LL A +E++L+ AG+ KLE E P F
Sbjct: 182 ADPVKDYLKLIGKVPLLNAEQEVELAKRIEAGLFSEYKLE-------EEEDHKPAF---- 230
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+REL + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 231 ------KRELEILVEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNVGLIRA 284
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQSRTIR+PV
Sbjct: 285 VEKFDYTKGFKFSTYATWWIRQAITRAMADQSRTIRIPV 323
>gi|124023525|ref|YP_001017832.1| type II alternative sigma factor, sigma70 family [Prochlorococcus
marinus str. MIT 9303]
gi|123963811|gb|ABM78567.1| Putative type II alternative sigma factor, sigma70 family protein
[Prochlorococcus marinus str. MIT 9303]
Length = 308
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L++RC GG+ +++ DQR RR
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------ALTDRCHLAGGAGPECEYSD----DQRLTIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTY
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|392946711|ref|ZP_10312353.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392290005|gb|EIV96029.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 422
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 71/91 (78%), Gaps = 6/91 (6%)
Query: 361 NYGILCKD------KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
+ G+L KD +++++N+RLV+S+AK Y G GM L DLVQEG GL+R EKFD +K
Sbjct: 174 DLGLLVKDGHAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYAK 233
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 234 GYKFSTYATWWIRQAIGRALADQARTIRIPV 264
>gi|291526136|emb|CBK91723.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale DSM
17629]
gi|291527130|emb|CBK92716.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium rectale M104/1]
Length = 418
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347
V DP+R LL+A+EE++L+ ++D VL R G+ +
Sbjct: 105 VSVEDPVRMYLKEIGKVPLLSADEEIELAQNMEDGAVATEKINVLKGRIDGASEEEKAEI 164
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+ L+R ++ G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 165 KEE--IKTLQRDVDKGADAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAV 222
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 223 EKFDYKKGYKFSTYATWWIRQAITRAIADQARTIRIPV 260
>gi|256375630|ref|YP_003099290.1| RNA polymerase sigma factor SigB [Actinosynnema mirum DSM 43827]
gi|255919933|gb|ACU35444.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 330
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 69/91 (75%)
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
ELR + G+ K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +K
Sbjct: 82 ELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTK 141
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GFKFSTYA WWI+QA+ + ++DQ RTIRLPV
Sbjct: 142 GFKFSTYATWWIRQAITRGMADQGRTIRLPV 172
>gi|334337294|ref|YP_004542446.1| RpoD subfamily RNA polymerase sigma-70 subunit [Isoptericola
variabilis 225]
gi|334107662|gb|AEG44552.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Isoptericola
variabilis 225]
Length = 547
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 13/160 (8%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQW-AAAA 349
+DP++ LL A +E++L+ I+ L E E LS+ G W A
Sbjct: 238 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---ERLSKEFGEG-----WDKTKA 289
Query: 350 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
++R L R L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 290 SAEERRLYRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIR 349
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 350 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 389
>gi|415723156|ref|ZP_11469330.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
gi|388063606|gb|EIK86175.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703C2mash]
Length = 429
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 128 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 168
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 169 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 228
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 229 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 270
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 107/193 (55%), Gaps = 19/193 (9%)
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+T AA K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 134 KTDAAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 193
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 372
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 194 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 239
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 240 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 299
Query: 433 SLSDQSRTIRLPV 445
+++DQ+RTIR+PV
Sbjct: 300 AMADQARTIRIPV 312
>gi|408678775|ref|YP_006878602.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
gi|328883104|emb|CCA56343.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
Length = 333
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 90/144 (62%), Gaps = 19/144 (13%)
Query: 306 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
LL A +E++LS AG+ L+G EV SE AAG + EL
Sbjct: 48 LLDAAKEVELSQTIEAGVYARQILDG--EVESE-------------AAGASREELEALYA 92
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR EKFD +KGFKFSTY
Sbjct: 93 AGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTY 152
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A WWI+QA+ +S++DQSRTIRLPV
Sbjct: 153 ATWWIRQAITRSIADQSRTIRLPV 176
>gi|126660003|ref|ZP_01731125.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126618681|gb|EAZ89428.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 297
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 68/80 (85%)
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
+DKMI +N+RLV+SIAK Y +G++L DL+QEG GL+RG EKFD S+G+KFSTYA+WW
Sbjct: 61 ARDKMIQANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFDPSRGYKFSTYAYWW 120
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+Q + +++++QSRTIRLP+
Sbjct: 121 IRQGITRAIAEQSRTIRLPI 140
>gi|408532063|emb|CCK30237.1| RNA polymerase principal sigma factor hrdA [Streptomyces davawensis
JCM 4913]
Length = 437
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 92/140 (65%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P + G+D L R + G +
Sbjct: 153 LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLD---SQLGLD---LDRLVVMGRM 199
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 200 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 259
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 260 IRQAMSRALADQARTIRVPV 279
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 105/160 (65%), Gaps = 7/160 (4%)
Query: 292 DPLR-----YLR--ATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQ 344
DPLR +++ + T + R + A E+++S G++ L +LE +R + E + +
Sbjct: 235 DPLRSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSS 294
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA +GVD++ L+++L +G C+D++I S LV+ A+ Y+G G+ L+DL+Q G G++
Sbjct: 295 WAETSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVL 354
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
+GAE+FD++KG++FSTY +WI++++ + ++ +R I +P
Sbjct: 355 QGAERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVP 394
>gi|218248849|ref|YP_002374220.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257061911|ref|YP_003139799.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218169327|gb|ACK68064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256592077|gb|ACV02964.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 417
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 360
IQ L+++ + + L G P++ +WA AA + EL+ L
Sbjct: 109 IQQLIEMAEIHDRLFISLGYRPSWDRWAKAAQISVGELKTILGQGKERWAQLADIELDQL 168
Query: 361 ----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
GI K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG+
Sbjct: 169 ETIEKVGIRAKEQMIKANLRLVVSVAKKYQHRGLELLDLIQEGTLGLERAVEKFDPTKGY 228
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + +++S QSR IRLPV
Sbjct: 229 RFSTYAYWWIRQGITRAISTQSRIIRLPV 257
>gi|78212534|ref|YP_381313.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
CC9605]
gi|78196993|gb|ABB34758.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. CC9605]
Length = 309
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 19/145 (13%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 360
+LLT +E+ + +Q ++ ++ERC GGS +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMV-------AITERCHLAGGSGPACEYSDEEKGVIRR------ 63
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K++MITSN+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FST
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFST 121
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 YAYWWIRQGLNRALSTQSRTIRIPV 146
>gi|415715691|ref|ZP_11466114.1| RNA polymerase sigma factor [Gardnerella vaginalis 1400E]
gi|388058138|gb|EIK80936.1| RNA polymerase sigma factor [Gardnerella vaginalis 1400E]
Length = 434
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 233
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 234 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 275
>gi|415707695|ref|ZP_11462312.1| RNA polymerase sigma factor [Gardnerella vaginalis 0288E]
gi|415712116|ref|ZP_11464612.1| RNA polymerase sigma factor [Gardnerella vaginalis 55152]
gi|388053374|gb|EIK76363.1| RNA polymerase sigma factor [Gardnerella vaginalis 0288E]
gi|388057343|gb|EIK80175.1| RNA polymerase sigma factor [Gardnerella vaginalis 55152]
Length = 434
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 233
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 234 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 275
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 105/190 (55%), Gaps = 19/190 (10%)
Query: 261 AAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ 320
AA K+ V + R+ R + +D +R LL A EE++L+ I+
Sbjct: 187 AAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE 246
Query: 321 -DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSNI 375
L E LR ++ G + AQ +R LN+ G K+ ++ +N+
Sbjct: 247 AGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWISRDGNRAKNHLLEANL 292
Query: 376 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 435
RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++
Sbjct: 293 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 352
Query: 436 DQSRTIRLPV 445
DQ+RTIR+PV
Sbjct: 353 DQARTIRIPV 362
>gi|308234847|ref|ZP_07665584.1| RNA polymerase sigma factor [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114490|ref|YP_003985711.1| DNA-directed RNA polymerase sigma subunit RpoD [Gardnerella
vaginalis ATCC 14019]
gi|385801872|ref|YP_005838275.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis HMP9231]
gi|415702756|ref|ZP_11458902.1| RNA polymerase sigma factor [Gardnerella vaginalis 284V]
gi|415705487|ref|ZP_11460758.1| RNA polymerase sigma factor [Gardnerella vaginalis 75712]
gi|417556475|ref|ZP_12207534.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 315-A]
gi|310945984|gb|ADP38688.1| DNA-directed RNA polymerase sigma subunit RpoD [Gardnerella
vaginalis ATCC 14019]
gi|333394129|gb|AEF32047.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis HMP9231]
gi|333602970|gb|EGL14395.1| RNA polymerase sigma factor RpoD [Gardnerella vaginalis 315-A]
gi|388052209|gb|EIK75233.1| RNA polymerase sigma factor [Gardnerella vaginalis 75712]
gi|388053302|gb|EIK76293.1| RNA polymerase sigma factor [Gardnerella vaginalis 284V]
Length = 434
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 133 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 173
Query: 350 GVDQRELRRR--LNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+DQ E +R+ L + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 174 QIDQMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 233
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 234 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 275
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL A EE++L+ I+ L E LR + SP +R+LR + G
Sbjct: 173 LLNAEEEVELAKRIEAGLYAAERLRRAIESGEKVSPQL----------RRDLRWIVRDGE 222
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 223 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 282
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++DQ+RTIR+PV
Sbjct: 283 WIRQAITRAMADQARTIRIPV 303
>gi|379707440|ref|YP_005262645.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
gi|374844939|emb|CCF62003.1| RNA polymerase principal sigma factor hrdA [Nocardia
cyriacigeorgica GUH-2]
Length = 319
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 105/182 (57%), Gaps = 25/182 (13%)
Query: 270 MSVKSGSTSRRKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLK 324
M+ + R P++ V DP+R YLRA + LL+A EE+ L+ AG+
Sbjct: 1 MTTRCLPARRTASPTLGTVS-DDPIRDYLRAIGRTP-LLSAEEEVALAERIAAGVL---- 54
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 384
R+ L E GG P ++R LRR + G K+ MI +N+RLV+SIA+
Sbjct: 55 ---ARQRLDE-AGGLPP---------AERRALRRTVADGARAKEHMIQANLRLVVSIARR 101
Query: 385 Y-QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 443
Y GM+L DLVQEG GL+R EKFD +G K STYA WWI+QA+ ++L+DQ RTIR+
Sbjct: 102 YPTNTGMSLLDLVQEGTFGLIRAIEKFDHRRGLKLSTYATWWIRQAIGRALADQGRTIRI 161
Query: 444 PV 445
PV
Sbjct: 162 PV 163
>gi|288920765|ref|ZP_06415065.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288347841|gb|EFC82118.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 425
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/95 (55%), Positives = 72/95 (75%), Gaps = 4/95 (4%)
Query: 355 ELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+LRR L G K +++++N+RLV+S+AK Y G GM L DLVQEG GL+R EKF
Sbjct: 173 DLRRDLGLLVTDGQAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKF 232
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 233 DYAKGYKFSTYATWWIRQAIGRALADQARTIRIPV 267
>gi|294790965|ref|ZP_06756123.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
gi|294458862|gb|EFG27215.1| RNA polymerase sigma (70) factor RpoD [Scardovia inopinata F0304]
Length = 588
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 11/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ LS I+ L + L L +F +
Sbjct: 285 ADPVKDYLKQIGRVNLLNAQQEVDLSERIEAGLYAQHL---LDTTDPDKLSFQR------ 335
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 336 --KRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 393
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 394 DWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 428
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 97/163 (59%), Gaps = 13/163 (7%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTF 342
P + E+ + DP+R LLTA +E++L+ ++ + +R
Sbjct: 74 PDLGEIAFDDPVRMYLQEIGQVPLLTAEQEVELAKAME-------AGAIARQRLDRE--- 123
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
++A+A ++ EL R + G + +I +N+RLV+SIAK Y G+ + DLVQEG G
Sbjct: 124 -EYASAR--ERFELERAVQQGQDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIG 180
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KG KFSTYA WWI+QA+ ++++DQSRTIRLPV
Sbjct: 181 LMRAVEKFDYKKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 223
>gi|254388870|ref|ZP_05004102.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294813166|ref|ZP_06771809.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|326441537|ref|ZP_08216271.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|197702589|gb|EDY48401.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
gi|294325765|gb|EFG07408.1| RNA polymerase principal sigma factor hrdD [Streptomyces
clavuligerus ATCC 27064]
Length = 333
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 71/98 (72%)
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A G +EL + G KD I SN+RLV+++A+ Y +G+ L DLVQEG GLVR
Sbjct: 79 AGGATHKELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLVQEGNAGLVRAV 138
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD SKGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 139 EKFDYSKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 176
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 110/202 (54%), Gaps = 13/202 (6%)
Query: 247 RSRRQTERKARRTRAAEKAAAN--VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSS 304
R RRQ E A AE A+ V + R+ R + +D +R
Sbjct: 125 RRRRQPEEDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKV 184
Query: 305 RLLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
LL A EE++L+ I+ L +E +RE S G AQ +R++ G
Sbjct: 185 ALLNAEEEVELAKRIEAGLFAVEKMRE--SAEKGEKLPVAQ--------RRDMTWICRDG 234
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA
Sbjct: 235 NRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 294
Query: 424 WWIKQAVRKSLSDQSRTIRLPV 445
WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 295 WWIRQAITRAMADQARTIRIPV 316
>gi|395776036|ref|ZP_10456551.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 328
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 90/156 (57%), Gaps = 18/156 (11%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
DP++ YLR + RLLTA +E+ L+ I+ L E L A
Sbjct: 32 DDPVKDYLR-LIARVRLLTAEQEVDLAKRIEAGLYAERL----------------LTAET 74
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
D REL G K ++ +N+RLV+S+AK Y G+ DL+QEG GL+R EK
Sbjct: 75 AYDTRELALLAEDGRRAKGHLVEANLRLVVSVAKRYINRGLAFLDLIQEGNTGLIRAVEK 134
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KGFKFSTYA WWIKQAV ++L+DQ RTIR+PV
Sbjct: 135 FDYTKGFKFSTYATWWIKQAVSRALADQGRTIRVPV 170
>gi|257068601|ref|YP_003154856.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
gi|256559419|gb|ACU85266.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium faecium DSM
4810]
Length = 433
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E ++ G +F
Sbjct: 128 ADPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDDSFRDKNGRLT 180
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 181 KAGRELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 240
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 241 DYAKGYKFSTYATWWIRQAITRAMADQARTIRIPV 275
>gi|416379954|ref|ZP_11684013.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357265758|gb|EHJ14479.1| RNA polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 297
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 21/154 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ + + LL++ EE++L+ IQ +L L +E LS
Sbjct: 8 DTVRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLE-KEQLS------------------ 48
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RE + + G +++MI +N+RLV+SIAK Y +G++L DL+QEG GL+RG EKFD
Sbjct: 49 --REEEKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFD 106
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++G+KFSTYA+WWI+Q + +++++QSRTIRLP+
Sbjct: 107 PARGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|67920853|ref|ZP_00514372.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856970|gb|EAM52210.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 297
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 98/154 (63%), Gaps = 21/154 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R+ + + LL++ EE++L+ IQ +L L +E LS
Sbjct: 8 DTVRHYLQSIGKTPLLSSAEEIKLAEEIQAMLPLLE-KEQLS------------------ 48
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
RE + + G +++MI +N+RLV+SIAK Y +G++L DL+QEG GL+RG EKFD
Sbjct: 49 --REEEKIVAKGQKARERMIEANLRLVVSIAKKYLNSGLSLLDLIQEGSLGLIRGVEKFD 106
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
++G+KFSTYA+WWI+Q + +++++QSRTIRLP+
Sbjct: 107 PARGYKFSTYAYWWIRQGITRAIAEQSRTIRLPI 140
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 88/139 (63%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLT ++ + L+ I+ L R L G P +WA A + EL R L
Sbjct: 273 LLTESQVVSLAREIRKLALWNATRIQLRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQR 332
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
++ ++ +N+RLV+S+AK + G+++QDL+QEG GL++GAE+FD GF+FSTYA WW
Sbjct: 333 ARESLVAANLRLVVSVAKQFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYAMWW 392
Query: 426 IKQAVRKSLSDQSRTIRLP 444
I+QA++++++D SR IR+P
Sbjct: 393 IRQAMQRAIADTSRPIRIP 411
>gi|133468|sp|P27785.1|RPOD_STRAU RecName: Full=RNA polymerase sigma factor RpoD
Length = 317
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE+ L+ ++ L E E+ GG+ A +L R + G +
Sbjct: 33 LLTAAEEVDLARRVEAGLFAE-------EKLGGAADLDSQLAV------DLDRLVVMGRM 79
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 80 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 139
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 140 IRQAMSRALADQARTIRVPV 159
>gi|295394756|ref|ZP_06804971.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
gi|294972352|gb|EFG48212.1| DNA-directed RNA polymerase sigma subunit RpoD [Brevibacterium
mcbrellneri ATCC 49030]
Length = 473
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 95/155 (61%), Gaps = 13/155 (8%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE+ L+ I+ + E L + G T A+
Sbjct: 174 ADPVKDYLKQIGKVALLNAAEEVDLAKRIEAGMYAEHLVD------EGKVTDAR------ 221
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
D R+ + ++ G + K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 222 -DLRDYKWIIHDGRIAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 280
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 281 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 315
>gi|428769135|ref|YP_007160925.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
gi|428683414|gb|AFZ52881.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium aponinum
PCC 10605]
Length = 399
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 71/101 (70%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA A V EL L GI K KMI +N+RLV+SIAK YQ G+ L DL+QEG GL
Sbjct: 139 WANLAQVKLSELETILANGIKAKQKMINANLRLVVSIAKKYQNRGLELLDLIQEGTLGLE 198
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ EKFD +KG+ FSTYA+WWI+Q + ++++ Q+RTIRLP+
Sbjct: 199 KAVEKFDHTKGYHFSTYAYWWIRQGMTRAIATQARTIRLPI 239
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA +E++LS I+ L E L E G T A+ +R+L+ G
Sbjct: 113 LLTAADEVELSQRIEAGLYAEHLLE-----TGEKLTRAR--------KRDLKILAREGRA 159
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WW
Sbjct: 160 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWW 219
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ + ++DQSRTIRLPV
Sbjct: 220 IRQAITRGMADQSRTIRLPV 239
>gi|170076898|ref|YP_001733536.1| group 2 sigma factor [Synechococcus sp. PCC 7002]
gi|169884567|gb|ACA98280.1| Group 2 sigma factor [Synechococcus sp. PCC 7002]
Length = 398
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 73/102 (71%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+WA G+ +EL L G K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 137 RWAEQVGLSVKELDSILKAGAKAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 196
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R +KFD +KG++FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 197 ERAVDKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 238
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
SDP+ + ++ LLT EE++L +Q L+ L ++ + S F
Sbjct: 17 SDPISWYLSSIGRVPLLTPAEEIELGNQVQTLMSLTEDGQIKEQ----SKEFTSHQ---- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
RR + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------RRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|424844271|ref|ZP_18268882.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
gi|363985709|gb|EHM12539.1| RNA polymerase sigma factor, sigma-70 family [Jonquetella anthropi
DSM 22815]
Length = 805
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Query: 356 LRRRLNYGI-LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
L +R+ G KD++I +N+RLV+SIAK Y G GM DL+QEG GL+R EKFD +
Sbjct: 557 LAKRVEAGDETAKDEIINANLRLVVSIAKKYIGRGMQFLDLIQEGNLGLIRAVEKFDYRR 616
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 617 GFKFSTYATWWIRQAITRAIADQARTIRIPV 647
>gi|429197710|ref|ZP_19189588.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
gi|428666600|gb|EKX65745.1| putative RNA polymerase sigma factor RpoD [Streptomyces ipomoeae
91-03]
Length = 429
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 145 LLTAAEEVELARRVEAGLFAE-------EKLSNTPDLDSELAL------DLDRLVVMGRM 191
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 192 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 251
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 252 IRQAMSRALADQARTIRVPV 271
>gi|18477825|emb|CAC83730.1| sigma factor [Rhodococcus fascians D188]
Length = 323
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 21/178 (11%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 328
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIE-----AGLY 57
Query: 329 -REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
++VL + V +R L + G + ++ +N+RLV+S+AK Y G
Sbjct: 58 AKQVLE----------NTKRLSAVKKRNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTG 107
Query: 388 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|358456365|ref|ZP_09166589.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357080541|gb|EHI89976.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 413
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 24/173 (13%)
Query: 279 RRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
RR P V DP+R + + LLTA E+ L+ I+ GL
Sbjct: 101 RRVAPREAPVTAHDPVRLYLTSIGKTPLLTAAGEVDLAKRIE-----AGL---------- 145
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKD------KMITSNIRLVISIAKNYQGAGMNL 392
FA + A D R+RL+ + D +++ +N+RLV+SIA+ Y G GM
Sbjct: 146 ---FAGYKLANDADDMSPRQRLDLEAIELDGQRANRQLVEANLRLVVSIARRYAGRGMLF 202
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D+VQEG GL+R EKFD +KG+KFSTYA WW++QA+ ++L+DQSRT+RLPV
Sbjct: 203 LDVVQEGNLGLIRAVEKFDYTKGYKFSTYATWWVRQAITRALADQSRTVRLPV 255
>gi|171742642|ref|ZP_02918449.1| hypothetical protein BIFDEN_01756 [Bifidobacterium dentium ATCC
27678]
gi|171278256|gb|EDT45917.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium ATCC
27678]
Length = 461
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQMD----FKR----- 209
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 266
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 267 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 302
>gi|311742667|ref|ZP_07716476.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
gi|311314295|gb|EFQ84203.1| DNA-directed RNA polymerase sigma subunit RpoD [Aeromicrobium
marinum DSM 15272]
Length = 464
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LLTA EE++L+ I+ L E E L++ SP +
Sbjct: 165 ADPVKDYLKQIGKVS-LLTAGEEVELAKRIEAGLFAE---EKLAKGGRISPKMREELDWI 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
VD R K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 VVDGRR----------AKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 270
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 271 FDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 306
>gi|269127406|ref|YP_003300776.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268312364|gb|ACY98738.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 385
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 97/165 (58%), Gaps = 27/165 (16%)
Query: 288 VDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
V SD +R YLR LLTA EE++L+ I+ G + A
Sbjct: 84 VPTSDLVRIYLREIGRVP-LLTAEEEVELAKTIE----------------AGLFAEEKLA 126
Query: 347 AAAGVDQRELRRRLNYGILC------KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGC 400
AA + RE RL+ ++ K ++I +N+RLV+SIAK Y G GM DL+QEG
Sbjct: 127 RAAFISPRE---RLDLELIAREGARAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGN 183
Query: 401 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL+R EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 184 LGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 228
>gi|297199501|ref|ZP_06916898.1| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
gi|297147415|gb|EDY56986.2| RNA polymerase sigma factor RpoS [Streptomyces sviceus ATCC 29083]
Length = 428
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 144 LLTAVEEVELARRVEAGLFAE-------EKLSSTPDLDSQLAL------DLDRLVVLGRM 190
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 191 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 250
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 251 IRQAMSRALADQARTIRVPV 270
>gi|33862729|ref|NP_894289.1| RNA polymerase sigma-70 factor family protein [Prochlorococcus
marinus str. MIT 9313]
gi|33634645|emb|CAE20631.1| Sigma-70 factor family [Prochlorococcus marinus str. MIT 9313]
Length = 308
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 94/144 (65%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L+ RC GG+ +++ DQR RR
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------ALTNRCHLAGGAGPECEYSD----DQRLTIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTY
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|303233350|ref|ZP_07320019.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
gi|302480479|gb|EFL43570.1| RNA polymerase sigma factor RpoD [Atopobium vaginae PB189-T1-4]
Length = 441
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 88/160 (55%), Gaps = 21/160 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG- 350
DP+R LLTA++E+ L+ I+ G T A G
Sbjct: 138 DPVRMYLKEIGKVDLLTADDEVHLAMKIE---------------AGNKATEQLEKAEKGE 182
Query: 351 -----VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
+ R L R G+ K + ++N+RL +SIAK Y G GM DL+QEG GL+R
Sbjct: 183 IELSRSEMRRLMREEQVGLDAKQALTSANLRLTVSIAKRYVGRGMLFLDLIQEGNLGLIR 242
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 243 AVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 282
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LL+A +E++L+ ++ L E ER G+P A
Sbjct: 59 SDLFRQYLREIGRIP-LLSAADEVELARRVEAGLFAE-------ERLAGTPDPDSGLAV- 109
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 110 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 164
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 165 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 200
>gi|359419322|ref|ZP_09211280.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
gi|358244729|dbj|GAB09349.1| RNA polymerase sigma factor SigB [Gordonia araii NBRC 100433]
Length = 321
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 103/176 (58%), Gaps = 21/176 (11%)
Query: 276 STSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--R 329
+TS R P+ ++D P +R + LL A +E++L+ I+ GL +
Sbjct: 3 TTSVRPAPTESDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIE-----AGLYAK 57
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
VL+ R P V +R+L + + G + ++ +N+RLV+S+AK Y G G
Sbjct: 58 HVLATRKRIGP----------VRKRDLNQIVREGEQARAHLLEANLRLVVSLAKRYTGRG 107
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 108 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 163
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 94/173 (54%), Gaps = 27/173 (15%)
Query: 295 RYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQR 354
RYLR T + A Q A L L ++E L+ G P+ +WA AGV
Sbjct: 89 RYLRLRT-----VLAGAAKQGDAVATPYLHLIEVQERLASELGHRPSLERWANTAGVQVS 143
Query: 355 ELRRRLNYG----------------------ILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+L+ L+ G + K+ MI +N+RLV+S+AK YQ G+ L
Sbjct: 144 DLKPILSEGKRRWAEIAKMTVEELEQIQSNGLQAKEHMIKANLRLVVSVAKKYQNRGLEL 203
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DLVQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 204 LDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 256
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 10/140 (7%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A +E++LS ++ + + + + +E G AAG + EL G
Sbjct: 47 LLDAAKEVELSQAVEAGVYAQQILDGEAEDTG----------AAGASREELEAIAAEGAR 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR EKFD +KGFKFSTYA WW
Sbjct: 97 AKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +S++DQSRTIRLPV
Sbjct: 157 IRQAITRSIADQSRTIRLPV 176
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 242 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 292
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 293 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 352
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 353 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 387
>gi|153309|gb|AAA26764.1| principal sigma-like factor [Streptomyces aureofaciens]
Length = 528
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
+DP++ LL A +E++L+ AG+ KLE E P F
Sbjct: 229 ADPVKDYLKLIGKVPLLNAEQEVELAKRIEAGLFSEYKLE-------EEEDHKPAF---- 277
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+REL + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 278 ------KRELEILVEDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNVGLIRA 331
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQSRTIR+PV
Sbjct: 332 VEKFDYTKGFKFSTYATWWIRQAITRAMADQSRTIRIPV 370
>gi|408677973|ref|YP_006877800.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
gi|328882302|emb|CCA55541.1| RNA polymerase principal sigma factor HrdA [Streptomyces venezuelae
ATCC 10712]
Length = 336
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE+ L+ ++ L E E+ +P A+
Sbjct: 37 SDLFRQYLREIGRIP-LLTAEEEVDLARRVEAGLFAE-------EKLANTPDLDSRLAS- 87
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K K+I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 88 -----DLDRLVVLGRIAKRKLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 142
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 143 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 178
>gi|260435993|ref|ZP_05789963.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
gi|260413867|gb|EEX07163.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8109]
Length = 309
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 19/145 (13%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWA-AAAGVDQRELRRRL 360
+LLT +E+ + +Q ++ + +ERC GG+ +++ GV +R
Sbjct: 17 QLLTPEQELMMGRKVQAMVSI-------TERCHLAGGTGPACEYSDEEKGVIRR------ 63
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K++MITSN+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FST
Sbjct: 64 --GERAKNQMITSNLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFST 121
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 YAYWWIRQGLNRALSTQSRTIRIPV 146
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 90/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE+ L+ I+ L E LR+ E SP ++RR LN+
Sbjct: 141 LLNAEEEVDLAKRIEAGLYGAERLRQAEEEGQKLSP--------------QMRRDLNWIV 186
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 187 RDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 246
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 247 YATWWIRQAITRAMADQARTIRIPV 271
>gi|116075407|ref|ZP_01472667.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116067604|gb|EAU73358.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 310
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 93/144 (64%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ ++ERC GG+ ++ E +R +
Sbjct: 16 QLLTPEQELTMGRKVQAMV-------AITERCMLAGGTGPACNYS-------EEEKRTIK 61
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTY
Sbjct: 62 KGEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|403512655|ref|YP_006644293.1| RNA polymerase sigma factor, sigma-70 family protein [Nocardiopsis
alba ATCC BAA-2165]
gi|402798576|gb|AFR05986.1| RNA polymerase sigma factor, sigma-70 family protein [Nocardiopsis
alba ATCC BAA-2165]
Length = 470
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 90/150 (60%), Gaps = 8/150 (5%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YL+A +LLTA +E+ L+ ++ L E R G + A V++ E
Sbjct: 171 YLKAI-GRRQLLTAEQEVDLAKRVEAGLYAE-------YRLGLHGEIDESVPMADVEREE 222
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L G K M+ +N+RLV+S+AK Y GM+L D+VQEG GL+R EKFD +KG
Sbjct: 223 LEWVAEDGRKAKSHMLEANLRLVVSVAKKYSDRGMSLLDVVQEGNLGLIRAVEKFDYTKG 282
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FKFSTYA WWI+QA+++ +D +RTIRLPV
Sbjct: 283 FKFSTYAMWWIRQAIQRGFADSARTIRLPV 312
>gi|428774079|ref|YP_007165867.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
gi|428688358|gb|AFZ48218.1| RNA polymerase, sigma subunit, RpsC/SigC [Cyanobacterium stanieri
PCC 7202]
Length = 389
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 74/104 (71%)
Query: 342 FAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCR 401
F +WA A + ELR L+ G K +MI +N+RLV+SIAK YQ G++L DL+QEG
Sbjct: 126 FQKWAELADLSVDELREILSVGKRAKQQMINANLRLVVSIAKKYQNRGLDLLDLIQEGTL 185
Query: 402 GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GL + EKFD KG+ FSTY++WWI+Q + ++++ QSR+IR+P+
Sbjct: 186 GLEKAVEKFDYRKGYHFSTYSYWWIRQGMTRAIATQSRSIRIPI 229
>gi|359771709|ref|ZP_09275155.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
gi|359311145|dbj|GAB17933.1| RNA polymerase sigma factor SigB [Gordonia effusa NBRC 100432]
Length = 329
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 23/173 (13%)
Query: 281 KRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL--REVL 332
KRP + E D +D +R + LL A +E++L+ I+ GL + VL
Sbjct: 14 KRPPMTEQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVELAKQIE-----TGLYAKHVL 68
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+ R + V +R+L + + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 69 ATR----------KRLSAVKKRDLAQIIREGEAARAHLLEANLRLVVSLAKRYTGRGMPL 118
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 119 LDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 22/149 (14%)
Query: 319 IQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRL------------------ 360
IQ + L + + L+ + G P +WA AGV +L+ L
Sbjct: 147 IQQYVHLIDIHDRLAAQLGHRPPLERWAREAGVVAGQLKTLLAEGKQAWATAIGMMVGEL 206
Query: 361 ----NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
G+ K+ MI +N+RLV+S+AK YQ G+ L DL+QEG GL R EKFD +KG+
Sbjct: 207 DQIQKEGVRAKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGY 266
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+FSTYA+WWI+Q + ++++ QSRTIRLPV
Sbjct: 267 RFSTYAYWWIRQGITRAIATQSRTIRLPV 295
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 9/140 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 351 IRQAITRAMADQARTIRIPV 370
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 9/140 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 351 IRQAITRAMADQARTIRIPV 370
>gi|294629207|ref|ZP_06707767.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292832540|gb|EFF90889.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 386
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 14/150 (9%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ ++ L E E+ +P A +
Sbjct: 93 YLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLSSTPDLDSRLAG------D 138
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G
Sbjct: 139 LDRLVVSGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 198
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 199 YKFSTYATWWIRQAMSRALADQARTIRVPV 228
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 351 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 385
>gi|386385680|ref|ZP_10070942.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385666870|gb|EIF90351.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 333
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 13/186 (6%)
Query: 262 AEKAAANVMSVKSGSTSR--RKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
A +A A S G+T R R S E+ D + + + LL A E++LS I
Sbjct: 2 ATRAVARRQSETKGTTGRASSARASGGEIADRDLVGMYLDEIARTPLLDAAREVELSQTI 61
Query: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
+ + R++L G A G + EL G KD+ I SN+RLV+
Sbjct: 62 EAGVYA---RQILDGEVEGE--------AGGAGREELEALAAAGERAKDEFIRSNLRLVV 110
Query: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
++A+ Y +G+ L DL+QEG GLVR EKFD +KGFKFSTYA WWI+QA+ +S++DQSR
Sbjct: 111 AVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSR 170
Query: 440 TIRLPV 445
TIRLPV
Sbjct: 171 TIRLPV 176
>gi|302802267|ref|XP_002982889.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
gi|302818650|ref|XP_002990998.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300141329|gb|EFJ08042.1| hypothetical protein SELMODRAFT_132663 [Selaginella moellendorffii]
gi|300149479|gb|EFJ16134.1| hypothetical protein SELMODRAFT_117159 [Selaginella moellendorffii]
Length = 292
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 84/126 (66%)
Query: 320 QDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVI 379
Q+ +K+E L +SE+ G PTF +WA A ++ +ELRR+L + C+ M++SN+ LVI
Sbjct: 1 QEHIKMEALFTSMSEQLGREPTFREWAEALKIEPQELRRKLKHAKRCRTNMVSSNLGLVI 60
Query: 380 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSR 439
+A+ + G ++DL+QEG GL+ G EKFD S+GF+ STY WWI+ +VR++ +S
Sbjct: 61 KVARKFGLKGTTIEDLIQEGINGLLHGVEKFDTSRGFRLSTYVLWWIELSVRRASVKRSI 120
Query: 440 TIRLPV 445
++P+
Sbjct: 121 MCQVPM 126
>gi|427709662|ref|YP_007052039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427362167|gb|AFY44889.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 92/140 (65%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +E+ +Q ++ L +E L + PT ++A + + EL ++L G
Sbjct: 37 LLDHEQEINFGKQVQQMMSLLTAKEKLVIQLNRQPTQLEFAEYIKLSESELLQQLQQGYQ 96
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K++MI +N+RLV+SIAK YQ ++ DL+QEG GL RG EKFD ++G+KFSTYA+WW
Sbjct: 97 AKEQMIRANLRLVVSIAKKYQRRNLDFLDLIQEGSLGLERGVEKFDPTRGYKFSTYAYWW 156
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++++Q RTIRLP+
Sbjct: 157 IRQAITRAIAEQGRTIRLPI 176
>gi|347951690|gb|AEP32981.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951692|gb|AEP32982.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951694|gb|AEP32983.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951696|gb|AEP32984.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951698|gb|AEP32985.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951700|gb|AEP32986.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951702|gb|AEP32987.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951704|gb|AEP32988.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951706|gb|AEP32989.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951708|gb|AEP32990.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951710|gb|AEP32991.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951712|gb|AEP32992.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951714|gb|AEP32993.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951716|gb|AEP32994.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951718|gb|AEP32995.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951720|gb|AEP32996.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951722|gb|AEP32997.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951724|gb|AEP32998.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951726|gb|AEP32999.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951728|gb|AEP33000.1| RpoD [Clavibacter michiganensis subsp. michiganensis]
gi|347951730|gb|AEP33001.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951732|gb|AEP33002.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951734|gb|AEP33003.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951736|gb|AEP33004.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951738|gb|AEP33005.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951740|gb|AEP33006.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951742|gb|AEP33007.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951744|gb|AEP33008.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951746|gb|AEP33009.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951748|gb|AEP33010.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951750|gb|AEP33011.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951752|gb|AEP33012.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951754|gb|AEP33013.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951756|gb|AEP33014.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951758|gb|AEP33015.1| RpoD [Clavibacter michiganensis subsp. sepedonicus]
gi|347951760|gb|AEP33016.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951762|gb|AEP33017.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951764|gb|AEP33018.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951766|gb|AEP33019.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951768|gb|AEP33020.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951770|gb|AEP33021.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951772|gb|AEP33022.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951774|gb|AEP33023.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951776|gb|AEP33024.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951778|gb|AEP33025.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951780|gb|AEP33026.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951782|gb|AEP33027.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951784|gb|AEP33028.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951786|gb|AEP33029.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951788|gb|AEP33030.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
michiganensis]
gi|347951790|gb|AEP33031.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951792|gb|AEP33032.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951794|gb|AEP33033.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951796|gb|AEP33034.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951798|gb|AEP33035.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951800|gb|AEP33036.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951802|gb|AEP33037.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951804|gb|AEP33038.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951806|gb|AEP33039.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951808|gb|AEP33040.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951810|gb|AEP33041.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951812|gb|AEP33042.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951814|gb|AEP33043.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951816|gb|AEP33044.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951818|gb|AEP33045.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951820|gb|AEP33046.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
sepedonicus]
gi|347951832|gb|AEP33052.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951834|gb|AEP33053.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
nebraskensis]
gi|347951836|gb|AEP33054.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
gi|347951838|gb|AEP33055.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
tessellarius]
Length = 265
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE++L+ I+ L E ++ +P +
Sbjct: 16 ADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------DKLANTPGIS------- 61
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 62 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 118
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 119 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 157
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 320
A A+V +T R+ R Q +D +R LL A +E+ L+ AG+
Sbjct: 132 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 191
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 192 AQHRLDEMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 244
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 245 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 304
Query: 441 IRLPV 445
IR+PV
Sbjct: 305 IRIPV 309
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%)
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
A AAG + EL G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 77 APAAGASRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 137 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 176
>gi|359776762|ref|ZP_09280065.1| RNA polymerase sigma factor SigA [Arthrobacter globiformis NBRC
12137]
gi|359305899|dbj|GAB13894.1| RNA polymerase sigma factor SigA [Arthrobacter globiformis NBRC
12137]
Length = 424
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ L+ I+ L E ++ ++ P +
Sbjct: 124 ADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLFAE--EKIAADDGSMDPKY-------- 173
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 174 --KRELEFIIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 231
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 232 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 266
>gi|406926592|gb|EKD62776.1| hypothetical protein ACD_52C00059G0002 [uncultured bacterium]
Length = 359
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 67/80 (83%)
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KDK+I SN+RLV+SIAK Y G G++L DL+QEG +GL+R EK+D +GFKFSTYA WW
Sbjct: 122 AKDKLIESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRRGFKFSTYATWW 181
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 182 IRQAITRAIADQARTIRIPV 201
>gi|296454312|ref|YP_003661455.1| RpoD family RNA polymerase sigma-70 factor [Bifidobacterium longum
subsp. longum JDM301]
gi|296183743|gb|ADH00625.1| RNA polymerase, sigma 70 subunit, RpoD family [Bifidobacterium
longum subsp. longum JDM301]
Length = 474
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 222
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 223 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 279
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 280 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 315
>gi|414077595|ref|YP_006996913.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
gi|413971011|gb|AFW95100.1| RpoD family RNA polymerase sigma factor SigC [Anabaena sp. 90]
Length = 411
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 74/110 (67%), Gaps = 4/110 (3%)
Query: 340 PTFA----QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
PT A +WA A + EL + G+ K MI +N+RLV+S+AK YQ G+ L DL
Sbjct: 142 PTLANGKRRWAEIANLTVEELEQVQTQGLQAKSHMIKANLRLVVSVAKKYQNRGLELLDL 201
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
VQEG GL R EKFD +KG++FSTYA+WWI+Q + ++++ SRTIRLPV
Sbjct: 202 VQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPV 251
>gi|170782020|ref|YP_001710352.1| RNA polymerase sigma factor [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156588|emb|CAQ01739.1| putative RNA polymerase sigma factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 355
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE++L+ I+ L E ++ +P +
Sbjct: 56 ADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------DKLANTPGIS------- 101
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 102 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 158
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 159 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 197
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 13/155 (8%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 232 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGDR 282
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 283 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 342
Query: 426 IKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
I+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 343 IRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 377
>gi|347951822|gb|AEP33047.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951824|gb|AEP33048.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951826|gb|AEP33049.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951828|gb|AEP33050.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
gi|347951830|gb|AEP33051.1| RNA polymerase sigma subunit [Clavibacter michiganensis subsp.
insidiosus]
Length = 265
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A EE++L+ I+ L E ++ +P +
Sbjct: 16 ADPVKDYLKQIGKVALLNAAEEVELAMRIEAGLFAE-------DKLANTPGIS------- 61
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
REL R L + G K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 62 ---RELERELRWVARDGQRAKSHLLGANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRA 118
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 119 VEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 157
>gi|339479381|gb|ABE95849.1| RNA polymerase principal sigma factor hrdB [Bifidobacterium breve
UCC2003]
Length = 472
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 277
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 278 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 313
>gi|297566693|ref|YP_003685665.1| RpoD subfamily RNA polymerase sigma-70 subunit [Meiothermus
silvanus DSM 9946]
gi|296851142|gb|ADH64157.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Meiothermus
silvanus DSM 9946]
Length = 483
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 283 PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDL------------LKLEGLRE 330
P V SDP+R LLT EE+ L+ ++D L+ + +R+
Sbjct: 130 PLTTRVSTSDPVRQYLHEIGQVPLLTLEEEIDLARRVEDGVASAQFLAQETGLETDLIRQ 189
Query: 331 VLSERCGGSPTFAQWAAA---------AGVDQR------ELRRRLNY---GILCKDKMIT 372
VL + G Q VD R E++R L+ G L + +I
Sbjct: 190 VLRAQVQGGARIHQVPGMEVKLDPETITAVDSRLRALPREVKRHLHIARDGELARQHLIE 249
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
+N+RLV+SIAK Y G G++ DL+QEG +GL+R EKF+ + +KFSTYA WWI+QA+ +
Sbjct: 250 ANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRYKFSTYATWWIRQAINR 309
Query: 433 SLSDQSRTIRLPV 445
+++DQ+RTIR+PV
Sbjct: 310 AIADQARTIRIPV 322
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 22/128 (17%)
Query: 340 PTFAQWAAAAGVDQRELRRRLN--YGIL--------------------CKDKMITSNIRL 377
PT +WA AAG+ EL+ LN YG +D+MI +N+RL
Sbjct: 88 PTRQEWARAAGMSVAELQTILNEGYGTWSRLIELEPCTLKAQLRDGRRARDRMIAANLRL 147
Query: 378 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 437
V+++AK YQ G+ L DLVQEG GL R EKFD ++GF+FSTYA+WWI+Q + ++++ Q
Sbjct: 148 VVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQ 207
Query: 438 SRTIRLPV 445
SRTIRLPV
Sbjct: 208 SRTIRLPV 215
>gi|309801431|ref|ZP_07695558.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
gi|308221946|gb|EFO78231.1| RNA polymerase sigma factor RpoD [Bifidobacterium dentium
JCVIHMP022]
Length = 461
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 160 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQMD----FKR----- 209
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 210 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 266
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 267 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 302
>gi|16331621|ref|NP_442349.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
gi|383323363|ref|YP_005384217.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326532|ref|YP_005387386.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492416|ref|YP_005410093.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437684|ref|YP_005652409.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815773|ref|YP_007452225.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|2500787|sp|Q59996.1|RPSC_SYNY3 RecName: Full=Probable RNA polymerase sigma-C factor
gi|1001684|dbj|BAA10419.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274717|dbj|BAK51204.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272683|dbj|BAL30202.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275853|dbj|BAL33371.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279023|dbj|BAL36540.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781742|gb|AGF52711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 404
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 70/101 (69%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 203
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTY++WWI+Q + ++++ QSR IRLPV
Sbjct: 204 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPV 244
>gi|239621277|ref|ZP_04664308.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
gi|239515738|gb|EEQ55605.1| RNA polymerase principal sigma factor [Bifidobacterium longum
subsp. infantis CCUG 52486]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 236
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 237 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 293
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 294 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 329
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 69/92 (75%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD S
Sbjct: 209 RELAMIVEDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYS 268
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 269 KGYKFSTYATWWIRQAITRAMADQARTIRIPV 300
>gi|302551232|ref|ZP_07303574.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
gi|302468850|gb|EFL31943.1| RNA polymerase sigma factor RpoS [Streptomyces viridochromogenes
DSM 40736]
Length = 438
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P A
Sbjct: 139 SDLFRQYLREIGRVP-LLTAAEEVELARRVEAGLFAE-------EKLRLAPDLDSQLAV- 189
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 190 -----DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 244
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 245 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 280
>gi|227547666|ref|ZP_03977715.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227211921|gb|EEI79817.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 464
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 163 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 212
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 213 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 269
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 270 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 305
>gi|23465986|ref|NP_696589.1| RNA polymerase sigma factor [Bifidobacterium longum NCC2705]
gi|46191322|ref|ZP_00206768.1| COG0568: DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Bifidobacterium longum DJO10A]
gi|189439160|ref|YP_001954241.1| RNA polymerase sigma factor [Bifidobacterium longum DJO10A]
gi|312132592|ref|YP_003999931.1| rpod [Bifidobacterium longum subsp. longum BBMN68]
gi|317482450|ref|ZP_07941467.1| RNA polymerase sigma factor RpoD [Bifidobacterium sp. 12_1_47BFAA]
gi|322689398|ref|YP_004209132.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis 157F]
gi|322691364|ref|YP_004220934.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum JCM 1217]
gi|384201340|ref|YP_005587087.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum KACC 91563]
gi|419846679|ref|ZP_14369907.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 1-6B]
gi|419850914|ref|ZP_14373876.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 35B]
gi|419853859|ref|ZP_14376659.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 2-2B]
gi|419855743|ref|ZP_14378493.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 44B]
gi|23326702|gb|AAN25225.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium
longum NCC2705]
gi|189427595|gb|ACD97743.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium longum
DJO10A]
gi|311773536|gb|ADQ03024.1| RpoD [Bifidobacterium longum subsp. longum BBMN68]
gi|316916110|gb|EFV37515.1| RNA polymerase sigma factor RpoD [Bifidobacterium sp. 12_1_47BFAA]
gi|320456220|dbj|BAJ66842.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320460734|dbj|BAJ71354.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis 157F]
gi|338754347|gb|AEI97336.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum KACC 91563]
gi|386406433|gb|EIJ21440.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 2-2B]
gi|386407605|gb|EIJ22573.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 35B]
gi|386413459|gb|EIJ28065.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 1-6B]
gi|386414966|gb|EIJ29507.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
longum 44B]
Length = 474
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 173 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 222
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 223 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 279
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 280 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 315
>gi|213691851|ref|YP_002322437.1| RNA polymerase sigma factor [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|384198994|ref|YP_005584737.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213523312|gb|ACJ52059.1| RNA polymerase, sigma 70 subunit, RpoD family [Bifidobacterium
longum subsp. infantis ATCC 15697 = JCM 1222]
gi|320457946|dbj|BAJ68567.1| RNA polymerase sigma factor RpoD [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 464
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 163 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 212
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 213 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 269
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 270 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 305
>gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
gi|21466014|pdb|1L9U|Q Chain Q, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
Length = 332
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 15/170 (8%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKL--------EGLREVLSERCGG 338
SDP+R LLT EE+ L+ G++ + KL E +REV+ + G
Sbjct: 2 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILG 61
Query: 339 SPTFAQWAAAAGVDQRELRRRLNY---GILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
+ + +EL+R L+ G + +I +N+RLV+SIAK Y G G++ DL
Sbjct: 62 TARVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDL 121
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+QEG +GL+R EKF+ + FKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 122 IQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPV 171
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 21/159 (13%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 362
LL A EE++L+ I+ L L +ER PT LRR + +
Sbjct: 239 LLNAEEEVELAKRIEAGLYASQLLAETAERGEKLPTA-------------LRRDMMWICR 285
Query: 363 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 286 DGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 345
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
A WWI+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 346 ATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 384
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 20/191 (10%)
Query: 261 AAEKAAAN-VMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGI 319
AA+KA+ + V + R+ R + +D +R LL A EE++L+ I
Sbjct: 120 AADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRI 179
Query: 320 Q-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMITSN 374
+ L E +RE FA+ V +RR N+ G K+ ++ +N
Sbjct: 180 EAGLFAAEKMRE-----------FAEQGEKLPV---AVRRDFNWIIRDGNRAKNHLLEAN 225
Query: 375 IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSL 434
+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +++
Sbjct: 226 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 285
Query: 435 SDQSRTIRLPV 445
+DQ+RTIR+PV
Sbjct: 286 ADQARTIRIPV 296
>gi|415726886|ref|ZP_11471114.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Dmash]
gi|388062615|gb|EIK85220.1| RNA polymerase sigma factor [Gardnerella vaginalis 00703Dmash]
Length = 501
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 200 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 240
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+D E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 241 DIDNMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 300
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 301 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 342
>gi|23295779|gb|AAN12882.1| principal sigma factor RpoD [Bifidobacterium animalis subsp.
lactis]
Length = 508
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 28/163 (17%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 207 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 259
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+QEG G
Sbjct: 260 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 306
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 307 LIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 349
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL +EE++L ++ ++ +E L T +WA G+ REL+ L G
Sbjct: 20 LLKPDEEIELGKQVKRMMTCWEKKENLQVE-KSYITEEEWAKEIGISVRELQLILKRGKR 78
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+KMI +N+RLV++++K YQG G+ DLV EG GL+R EKF+ KG+KFSTYA+ W
Sbjct: 79 AKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLIRAVEKFEYDKGYKFSTYAYHW 138
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ +++ D+ RTIR+PV
Sbjct: 139 IRQALVRAICDKGRTIRVPV 158
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 9/140 (6%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL A EE++L+ I+ L L LSER P +R++ G
Sbjct: 240 LLNAEEEVELAKRIEAGLYATQLMTELSERGEKLP---------AAQRRDMMWICRDGGR 290
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 291 AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW 350
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 351 IRQAITRAMADQARTIRIPV 370
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 19/193 (9%)
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+T A K+ V + R+ R + +D +R LL A EE++L+
Sbjct: 136 KTEPAAKSGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAK 195
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDKMIT 372
I+ L E LR ++ G + AQ +R LN+ G K+ ++
Sbjct: 196 RIEAGLFATERLRRMMD--SGEKISTAQ------------KRDLNWISRDGNRAKNHLLE 241
Query: 373 SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK 432
+N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ +
Sbjct: 242 ANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITR 301
Query: 433 SLSDQSRTIRLPV 445
+++DQ+RTIR+PV
Sbjct: 302 AMADQARTIRIPV 314
>gi|384196835|ref|YP_005582579.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110812|gb|AEF27828.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 472
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 277
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 278 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 313
>gi|384191381|ref|YP_005577129.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|384192526|ref|YP_005578273.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289178873|gb|ADC86119.1| HrdB [Bifidobacterium animalis subsp. lactis BB-12]
gi|340365263|gb|AEK30554.1| HrdB [Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 522
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 28/163 (17%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 221 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 273
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+QEG G
Sbjct: 274 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 320
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 321 LIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 363
>gi|407960748|dbj|BAM53988.1| RNA polymerase sigma factor SigC [Synechocystis sp. PCC 6803]
Length = 385
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 70/101 (69%)
Query: 345 WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
WA AG+ EL GI K MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 125 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 184
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG++FSTY++WWI+Q + ++++ QSR IRLPV
Sbjct: 185 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPV 225
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 99/171 (57%), Gaps = 26/171 (15%)
Query: 275 GSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
G SRR+ SDP+ + +T LLT EE++L +Q +++L
Sbjct: 9 GGASRRR--------GSDPISWYLSTIGRVPLLTPAEEIELGNQVQAMMRLT-------- 52
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
+ DQ+ ++ + G K++M+ +N+RLV+S+AK YQG G+ L D
Sbjct: 53 --------EEEPENGYTDQQ--KKTIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLD 102
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL R EKFD ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 103 LIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 153
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 70/89 (78%)
Query: 357 RRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF 416
+R+ I+ K+K+I +N+RLV+SIAK Y G GM+ DLVQEG GL++G EKFD +KG+
Sbjct: 182 KRKTEGDIVAKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGY 241
Query: 417 KFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
K STYA WWI+Q+V ++L+D +RTIR+PV
Sbjct: 242 KLSTYATWWIRQSVTRALADHARTIRVPV 270
>gi|183601374|ref|ZP_02962744.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683429|ref|YP_002469812.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191127|ref|YP_002968521.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196533|ref|YP_002970088.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194120|ref|YP_005579866.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384195685|ref|YP_005581430.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|387820993|ref|YP_006301036.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|387822671|ref|YP_006302620.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
gi|423679653|ref|ZP_17654529.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|183218980|gb|EDT89621.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis HN019]
gi|219621079|gb|ACL29236.1| principal sigma factor RpoD [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249519|gb|ACS46459.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251087|gb|ACS48026.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794116|gb|ADG33651.1| DNA-directed RNA polymerase sigma subunit [Bifidobacterium animalis
subsp. lactis V9]
gi|345282979|gb|AEN76833.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366041297|gb|EHN17801.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp. lactis
BS 01]
gi|386653694|gb|AFJ16824.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis B420]
gi|386655279|gb|AFJ18408.1| RNA polymerase sigma factor RpoD [Bifidobacterium animalis subsp.
lactis Bi-07]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 28/163 (17%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+QEG G
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 286
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 287 LIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 329
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 17/159 (10%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWA 346
DP+R LL+++EE++L+ AG + +L L+E G A+
Sbjct: 143 DDPVRMYLKEIGKVNLLSSDEEIELAQAMGAGAEAKEQLAELQE------SGEEIPAEVL 196
Query: 347 AAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
A EL + + G K ++ +N+RLV+SIAK Y G GM DL+QEG GL++
Sbjct: 197 A-------ELNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKA 249
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 250 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 288
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA +E++LS I+ L E L + G T A+ +R+L+ + G
Sbjct: 137 LLTAADEVELSQRIEAGLYAEHLLD-----SGEKLTRAR--------KRDLKVLVREGRA 183
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KG+KFSTYA WW
Sbjct: 184 ARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGYKFSTYATWW 243
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ + ++DQSRTIRLPV
Sbjct: 244 IRQAITRGMADQSRTIRLPV 263
>gi|309791990|ref|ZP_07686468.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225984|gb|EFO79734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 396
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 355 ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 414
ELRR++ G + +M +N+RLV+SIAK Y+ G+ L DL+QEG GL+R EKFD K
Sbjct: 146 ELRRQIEKGNDARQQMAAANLRLVVSIAKRYRDRGLPLLDLIQEGSLGLLRAIEKFDHDK 205
Query: 415 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GFKFSTYA WWIKQA+ ++L+DQSR +RLPV
Sbjct: 206 GFKFSTYATWWIKQALSRALADQSRLVRLPV 236
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 73/93 (78%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+REL+ ++ G L K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 255 RRELQILVHDGQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDY 314
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 315 TKGYKFSTYATWWIRQAITRAMADQARTIRIPV 347
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 91/159 (57%), Gaps = 20/159 (12%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
S+P+R LLTA E++ L+ I+ G + A A
Sbjct: 109 SEPVRMYLKEIGKVPLLTAEEQVDLAKRIE----------------AGLFASDKLAVATK 152
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
++RR L G + K K++ +N+RLV+SIAK Y G GM DL+QEG GL+R
Sbjct: 153 KTSPQMRRDLEAIERDGQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRA 212
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 213 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 251
>gi|291457726|ref|ZP_06597116.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|417942051|ref|ZP_12585328.1| RNA polymerase sigma factor [Bifidobacterium breve CECT 7263]
gi|291380779|gb|EFE88297.1| RNA polymerase sigma factor RpoD [Bifidobacterium breve DSM 20213 =
JCM 1192]
gi|376167436|gb|EHS86272.1| RNA polymerase sigma factor [Bifidobacterium breve CECT 7263]
Length = 472
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 96/156 (61%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + SE F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTESEGM----EFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 ---KRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 277
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 278 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 313
>gi|306822519|ref|ZP_07455897.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
gi|304554064|gb|EFM41973.1| DNA-directed RNA polymerase sigma subunit RpoD [Bifidobacterium
dentium ATCC 27679]
Length = 472
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 14/156 (8%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ L + L + + + F +
Sbjct: 171 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEASQM----DFKR----- 220
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+REL+ N G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EK
Sbjct: 221 ---RRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEK 277
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 278 FDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 313
>gi|291453499|ref|ZP_06592889.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|359149807|ref|ZP_09182739.1| RNA polymerase principal sigma factor hrdD [Streptomyces sp. S4]
gi|421740810|ref|ZP_16179040.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|17366575|sp|Q59914.1|HRDD_STRGR RecName: Full=RNA polymerase principal sigma factor HrdD
gi|510454|emb|CAA56305.1| sigma factor [Streptomyces griseus]
gi|291356448|gb|EFE83350.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|406690772|gb|EKC94563.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 332
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 72/98 (73%)
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+AG + EL + G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 78 SAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAV 137
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 138 EKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 175
>gi|443673296|ref|ZP_21138364.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414111|emb|CCQ16702.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 323
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 21/178 (11%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGL- 328
S ST+ R RP+ ++D P +R + LLTA EE+ L+ I+ GL
Sbjct: 3 SPSTTIRPRPTDADLDAQSPAADLVRVYLNGIGRTALLTAAEEVDLAKRIE-----AGLY 57
Query: 329 -REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
++VL + V +R L + G + ++ +N+RLV+S+AK Y G
Sbjct: 58 AKQVLE----------NTKRLSAVKKRNLAIIVRDGSSARSHLLEANLRLVVSLAKRYTG 107
Query: 388 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 108 RGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 165
>gi|269956779|ref|YP_003326568.1| RpoD subfamily RNA polymerase sigma-70 subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269305460|gb|ACZ31010.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Xylanimonas
cellulosilytica DSM 15894]
Length = 549
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 14/160 (8%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWA-AAA 349
+DP++ LL A +E++L+ I+ L E E LS+ FA + A
Sbjct: 241 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE---EKLSK------DFADFDRTKA 291
Query: 350 GVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
D R L R L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 292 DADTRRLVRDLQWIAHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIR 351
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 352 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 391
>gi|33866043|ref|NP_897602.1| type II alternative RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
gi|33639018|emb|CAE08024.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
Length = 308
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 96/144 (66%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ L +Q ++ V++E C GGS +++ +++ + RR
Sbjct: 16 QLLTPEQELMLGRKVQAMV-------VITEPCQLAGGSGPSCEYSD----EEKAVIRR-- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FSTY
Sbjct: 63 -GERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSTY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|377562738|ref|ZP_09792106.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
gi|377530035|dbj|GAB37271.1| RNA polymerase sigma factor SigB [Gordonia sputi NBRC 100414]
Length = 336
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 24/183 (13%)
Query: 271 SVKSGSTSRRKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
+V SG T+ RP++ E D +D +R + LL A +E++L+ I+
Sbjct: 12 TVASGDTTP-SRPAMTEQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIE---- 66
Query: 325 LEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIA 382
GL + VL+ R + +AA +R+L + G + + ++ +N+RLV+S+A
Sbjct: 67 -AGLYAKHVLATR-------KRLSAAK---KRDLTIVVREGEVARAHLLEANLRLVVSLA 115
Query: 383 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 442
K Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIR
Sbjct: 116 KRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIR 175
Query: 443 LPV 445
LPV
Sbjct: 176 LPV 178
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 452 NLQSE 456
+Q E
Sbjct: 351 RIQRE 355
>gi|318058872|ref|ZP_07977595.1| RNA polymerase principal sigma factor [Streptomyces sp. SA3_actG]
gi|333027299|ref|ZP_08455363.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
gi|332747151|gb|EGJ77592.1| putative RNA polymerase sigma (70) factor RpoD [Streptomyces sp.
Tu6071]
Length = 338
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 12/127 (9%)
Query: 343 AQWAAAAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 399
A+ A +D R +L R + G K ++I SN+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 75 AKLAGPGPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEG 134
Query: 400 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP---------VISHGR 450
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P V+ R
Sbjct: 135 NLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 194
Query: 451 GNLQSEG 457
G LQ G
Sbjct: 195 GLLQERG 201
>gi|302545597|ref|ZP_07297939.1| RNA polymerase sigma (70) factor RpoD [Streptomyces hygroscopicus
ATCC 53653]
gi|302463215|gb|EFL26308.1| RNA polymerase sigma (70) factor RpoD [Streptomyces himastatinicus
ATCC 53653]
Length = 443
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LL+A EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 159 LLSAAEEVELARRVEAGLFAE-------EKLASAPDLDSQLAL------DLDRLVVLGRM 205
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 206 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 265
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 266 IRQAMSRALADQARTIRVPV 285
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 198 LLNAEEEVELAKRIEAGLYATERLRRIME--SGEKLSTAQ------------KRDLNWIS 243
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 244 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 303
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 304 YATWWIRQAITRAMADQARTIRIPV 328
>gi|373470015|ref|ZP_09561166.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371763329|gb|EHO51816.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 340
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 361 NYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
N I + KM SN+RLV+SIAK Y G GM L DL+QEG GL+R EKFD KGFKFST
Sbjct: 147 NVRIEARKKMAESNLRLVVSIAKRYMGRGMQLLDLIQEGNLGLLRAVEKFDYQKGFKFST 206
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ +S++DQ+RTIR+PV
Sbjct: 207 YATWWIRQAITRSIADQARTIRIPV 231
>gi|345849581|ref|ZP_08802591.1| RNA polymerase principal sigma factor [Streptomyces zinciresistens
K42]
gi|345638994|gb|EGX60491.1| RNA polymerase principal sigma factor [Streptomyces zinciresistens
K42]
Length = 332
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 71/97 (73%)
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AG + EL ++ G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR E
Sbjct: 79 AGATREELEALVDEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVE 138
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 139 KFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 175
>gi|336320563|ref|YP_004600531.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
gi|336104144|gb|AEI11963.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [[Cellvibrio]
gilvus ATCC 13127]
Length = 541
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 21/159 (13%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E ER G T
Sbjct: 242 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAE-------ERLGSGATM-------- 286
Query: 351 VDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+ ++RR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 287 --EPKIRRELEWIAQDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRA 344
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 345 VEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 383
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKIKEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL A EE++L+ I+ L E LR E +P +R+LR + G
Sbjct: 147 LLNAEEEVELAKRIEAGLYAAERLRRAEDESEKLTPQM----------RRDLRWIVRDGE 196
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA W
Sbjct: 197 RAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATW 256
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++DQ+RTIR+PV
Sbjct: 257 WIRQAITRAMADQARTIRIPV 277
>gi|345008771|ref|YP_004811125.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
violaceusniger Tu 4113]
gi|344035120|gb|AEM80845.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
violaceusniger Tu 4113]
Length = 334
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 72/100 (72%)
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
A AAG + EL G KD I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 78 APAAGASREELAAIAAEGARAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 137
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 138 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 177
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 452 NLQSE 456
+Q E
Sbjct: 347 RIQRE 351
>gi|452911225|ref|ZP_21959896.1| RNA polymerase sigma factor RpoD [Kocuria palustris PEL]
gi|452833651|gb|EME36461.1| RNA polymerase sigma factor RpoD [Kocuria palustris PEL]
Length = 544
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 72/94 (76%)
Query: 352 DQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFD 411
D++ LR ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 293 DRKALRWVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 352
Query: 412 ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 353 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 386
>gi|386867263|ref|YP_006280257.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
gi|385701346|gb|AFI63294.1| RNA polymerase sigma factor [Bifidobacterium animalis subsp.
animalis ATCC 25527]
Length = 488
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 97/163 (59%), Gaps = 28/163 (17%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGI--QDLLKLEG-LREVLSERCGGSPTF 342
+DP++ YL+ S LL A +E+ LS AG+ Q LL EG E +R
Sbjct: 187 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIEAGLYAQHLLDTEGDTMEFRRKRE------ 239
Query: 343 AQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 402
+WAAA G KD ++ +N+RLV+S+AK Y G GM DL+QEG G
Sbjct: 240 LKWAAADGKK-------------AKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLG 286
Query: 403 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 287 LIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 329
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 452 NLQSE 456
+Q E
Sbjct: 347 RIQRE 351
>gi|256832655|ref|YP_003161382.1| RpoD subfamily RNA polymerase sigma-70 subunit [Jonesia
denitrificans DSM 20603]
gi|256686186|gb|ACV09079.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Jonesia
denitrificans DSM 20603]
Length = 504
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 94/161 (58%), Gaps = 24/161 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L +A+ AAG
Sbjct: 204 ADPVKDYLKQIGKVALLNAEQEVELAKRIEAGL------------------YAEERLAAG 245
Query: 351 VDQ------RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV 404
V + RE R + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+
Sbjct: 246 VAEGDRKLEREYRWIIQDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLI 305
Query: 405 RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 306 RAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 346
>gi|383776221|ref|YP_005460787.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381369453|dbj|BAL86271.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 333
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/144 (45%), Positives = 87/144 (60%), Gaps = 13/144 (9%)
Query: 302 SSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
S + LL A E++LS I+ L E L E ER GV + EL R +
Sbjct: 47 SRTPLLDAEREVELSRTIEAGLYAEHLLEQGEER-------------RGVSREELERLVT 93
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR EKFD KGFKFSTY
Sbjct: 94 EGQRAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVEKFDYEKGFKFSTY 153
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A WW++QA+ ++++ Q RT+RLPV
Sbjct: 154 ATWWVRQAISRAIAQQERTVRLPV 177
>gi|358457491|ref|ZP_09167709.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357079327|gb|EHI88768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 385
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 28/177 (15%)
Query: 278 SRRKRPSVQEVDY--SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSE 334
SRR+ P D +DP+R YLR + LLTA E+ L+ I+
Sbjct: 70 SRRRGPEKPASDAPATDPVRVYLRDIGKVA-LLTAEGEVDLAKRIE-------------- 114
Query: 335 RCGGSPTFA--QWAAAAGVDQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGA 388
+ FA + A A G RR L G + K +++ +N+RLV+S+AK Y
Sbjct: 115 ----AGVFAAHKLATATGATTPRERRDLEAVEADGNIAKRRLVEANLRLVVSVAKRYVSR 170
Query: 389 GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GM D+VQEG GL+R EKFD +KGFKFSTYA WWI+QA+ +SL+DQ+RTIR+PV
Sbjct: 171 GMPFLDVVQEGNLGLIRAVEKFDYAKGFKFSTYATWWIRQAISRSLADQARTIRIPV 227
>gi|315604554|ref|ZP_07879617.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315313566|gb|EFU61620.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 516
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/256 (34%), Positives = 131/256 (51%), Gaps = 34/256 (13%)
Query: 207 EAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAA 266
EA EE + D EPT E+LK + + S + E + +A E AA
Sbjct: 120 EAEVAEEVIDDIETGDDEDFEPTGEDLKDPDLETDADDEEESDVEEEAEEEDPKAFEGAA 179
Query: 267 ANV-----MSVKSG---STSRRKRPSVQEVDYS----DPLR-YLRATTSSSRLLTANEEM 313
+ VK G S S VQ+V + DP++ YL+ S LL A +E+
Sbjct: 180 LRERTNAGIHVKGGFVVSDSDETDEPVQQVTVAGATADPVKDYLKQIGKVS-LLNAEQEV 238
Query: 314 QLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDK 369
L+ AG+ KL+ + ++ R ++REL G K+
Sbjct: 239 DLARRIEAGLYAEYKLKNQADEMTSR----------------ERRELHFLAQDGQQAKNH 282
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 283 LLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 342
Query: 430 VRKSLSDQSRTIRLPV 445
+ ++++DQ+RTIR+PV
Sbjct: 343 ITRAMADQARTIRIPV 358
>gi|312195623|ref|YP_004015684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226959|gb|ADP79814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 418
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 21/158 (13%)
Query: 292 DPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGV 351
D +R + RLLTA EE+ L+ ++ G + AA G+
Sbjct: 120 DSVRQYLSQIGRVRLLTAEEEVDLAKRVE----------------AGLFAAEKLAAENGL 163
Query: 352 DQRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
+LRR L + G + K +++ +N+RLV+SIA+ Y G GM DL+QEG GL+R
Sbjct: 164 -VGDLRRELVWVERDGEIAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAV 222
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 223 EKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 260
>gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum]
Length = 497
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 173 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 232
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 233 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 289
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 290 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 349
Query: 452 NLQSE 456
+Q E
Sbjct: 350 RIQRE 354
>gi|116670178|ref|YP_831111.1| RNA polymerase subunit sigma 28 [Arthrobacter sp. FB24]
gi|116610287|gb|ABK03011.1| RNA polymerase, sigma 70 subunit, RpoD [Arthrobacter sp. FB24]
Length = 441
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 93/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ L+ I+ L E ++ ++ P
Sbjct: 141 ADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLFAE--EKIAADDGSMDPKL-------- 190
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 191 --KRELEFVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 248
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 249 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 283
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLS----AGIQ 320
A A+V +T R+ R + +D +R LL A +E+ L+ AG+
Sbjct: 137 AGASVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 196
Query: 321 DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVIS 380
+L+ + +++E A + +R+LR G K+ ++ +N+RLV+S
Sbjct: 197 AQHRLDDMERLIAEGDAA-------AKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVS 249
Query: 381 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 440
+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RT
Sbjct: 250 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 309
Query: 441 IRLPV 445
IR+PV
Sbjct: 310 IRIPV 314
>gi|227488742|ref|ZP_03919058.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227542262|ref|ZP_03972311.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227091164|gb|EEI26476.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182091|gb|EEI63063.1| RNA polymerase sigma factor SigB [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 327
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 16/142 (11%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGL--REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYG 363
LL+A EE++L+ ++ GL R +L++ P + A +R+L+ G
Sbjct: 42 LLSAEEEVELAKTVE-----VGLYARHLLND-----PEYKPTRAM----KRDLKELAREG 87
Query: 364 ILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
++ M+ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD +KGFKFSTYA
Sbjct: 88 DKARNHMLEANLRLVVSLAKRYSGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYAT 147
Query: 424 WWIKQAVRKSLSDQSRTIRLPV 445
WWI+QA+ + ++DQSRTIRLPV
Sbjct: 148 WWIRQAITRGMADQSRTIRLPV 169
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 15/249 (6%)
Query: 207 EAAPEEEYS---------EQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKAR 257
E AP EE EQ D +PTHE+++ E + Q E
Sbjct: 92 EKAPSEEAEDAEDQLDSVEQDAPADDVDFDPTHEDIEEDEFDAPTDLD-EDDIQEELGEE 150
Query: 258 RTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSA 317
+ ++V + R+ R Q +D +R LL A +E+ L+
Sbjct: 151 EDEDEVEDTSSVWDEEESVALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAK 210
Query: 318 GIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIR 376
I+ L + E+ R G A + +++R+LR G K+ ++ +N+R
Sbjct: 211 RIEAGLYAQHRMDEMEKARAEGDKA----AKLSPMEKRDLRSIARDGRKAKNHLLEANLR 266
Query: 377 LVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD 436
LV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++D
Sbjct: 267 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 326
Query: 437 QSRTIRLPV 445
Q+RTIR+PV
Sbjct: 327 QARTIRIPV 335
>gi|386773591|ref|ZP_10095969.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium
paraconglomeratum LC44]
Length = 437
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ L E ++ G ++
Sbjct: 132 ADPVKDYLKQIGKVALLNAAQEVELAERIEAGLYAE-------QKLKGDESYRDKNGRLT 184
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
REL + G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 185 KAGRELTMIADDGRAAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 244
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 245 DYAKGYKFSTYATWWIRQAITRAMADQARTIRIPV 279
>gi|415728225|ref|ZP_11471798.1| RNA polymerase sigma factor [Gardnerella vaginalis 6119V5]
gi|388065363|gb|EIK87854.1| RNA polymerase sigma factor [Gardnerella vaginalis 6119V5]
Length = 501
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 200 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 240
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+D E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 241 EIDNMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 300
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 301 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 342
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 452 NLQSE 456
+Q E
Sbjct: 347 RIQRE 351
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 6/231 (2%)
Query: 216 EQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSG 275
EQ D +PTHE+++ E + Q E + ++V +
Sbjct: 109 EQDAPADDVDFDPTHEDIEEDEFDAPTDLD-EDDIQEELGEEEDEDEVEDTSSVWDEEES 167
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQ-DLLKLEGLREVLSE 334
R+ R Q +D +R LL A +E+ L+ I+ L + E+
Sbjct: 168 VALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYAQHRMDEMEKA 227
Query: 335 RCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQD 394
R G A + +++R+LR G K+ ++ +N+RLV+S+AK Y G GM D
Sbjct: 228 RAEGDKA----AKLSPMEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 283
Query: 395 LVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
L+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 284 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 334
>gi|455652448|gb|EMF31078.1| RNA polymerase sigma factor [Streptomyces gancidicus BKS 13-15]
Length = 428
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 93/150 (62%), Gaps = 14/150 (9%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ ++ L E E+ +P A +
Sbjct: 135 YLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLRLTPDLDSRLA------HD 180
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G
Sbjct: 181 LDRLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 240
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FKFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 241 FKFSTYATWWIRQAMSRALADQARTIRVPV 270
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 186 LLNAEEEVELAKRIEAGLFATERLRRIMD--AGEKLSTAQ------------KRDLNWIS 231
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 232 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 291
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 292 YATWWIRQAITRAMADQARTIRIPV 316
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 17/144 (11%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY--- 362
LL A EE++L+ I+ L E + ER G P +RR +N+
Sbjct: 195 LLNAEEEVELAKRIEAGLFAEQMINRWVER-GEKPAIG------------IRRDMNWIAR 241
Query: 363 -GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 242 DGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 301
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 302 ATWWIRQAITRAMADQARTIRIPV 325
>gi|148239078|ref|YP_001224465.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847617|emb|CAK23168.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 308
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 95/144 (65%), Gaps = 17/144 (11%)
Query: 305 RLLTANEEMQLSAGIQDLLKLEGLREVLSERC---GGSPTFAQWAAAAGVDQRELRRRLN 361
+LLT +E+ + +Q ++ L +ERC GGS +++ ++R ++R
Sbjct: 16 QLLTPEQELTMGRKVQAMVSL-------TERCHLAGGSGPACEYSDD---EKRTIKR--- 62
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K++MIT+N+RLV+++AK YQG G++L DL+QEG GL R EK+D ++G +FS Y
Sbjct: 63 -GEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGTLGLTRAVEKYDPTRGHRFSNY 121
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A+WWI+Q + ++LS QSRTIR+PV
Sbjct: 122 AYWWIRQGLNRALSTQSRTIRIPV 145
>gi|256376033|ref|YP_003099693.1| RpoD subfamily RNA polymerase sigma-70 subunit [Actinosynnema mirum
DSM 43827]
gi|255920336|gb|ACU35847.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 320
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 15/173 (8%)
Query: 273 KSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVL 332
K + R+R S Q D +YLR S+ LLTA EE+ LS I+ + E L
Sbjct: 5 KPNADQSRRRASEQAADADLFGQYLRQVGSTP-LLTAAEEVVLSRRIEAGVYAEHLL--- 60
Query: 333 SERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+PT A+ +R L + + G KD MI +N+RLV+S+AK + G+ L
Sbjct: 61 ---ADTAPTPAR--------RRALNQVVADGRDAKDHMIRANLRLVVSVAKKHSFRGLPL 109
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D+VQEG GL+R EKFD SKG+KFSTYA WWI+QA+ + L++Q+RT+RLPV
Sbjct: 110 LDVVQEGNLGLIRAVEKFDYSKGYKFSTYAIWWIRQAIERGLAEQTRTVRLPV 162
>gi|296139548|ref|YP_003646791.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027682|gb|ADG78452.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 330
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 19/172 (11%)
Query: 280 RKRPSVQEVDY------SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLS 333
R RP + E D +D +R + LLTA +E++L+ I+ L + L +
Sbjct: 14 RVRPELTEADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDT-K 72
Query: 334 ERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQ 393
+R S +R+L + G + ++ +N+RLV+S+AK Y G GM L
Sbjct: 73 KRLSASK------------KRDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLL 120
Query: 394 DLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 121 DLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 172
>gi|29832222|ref|NP_826856.1| RNA polymerase sigma factor [Streptomyces avermitilis MA-4680]
gi|29609340|dbj|BAC73391.1| putative RNA polymerase sigma factor [Streptomyces avermitilis
MA-4680]
Length = 389
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ +P +
Sbjct: 90 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLSSTPDLD---SQL 138
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
G+D L + + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 139 GLD---LDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK 195
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 196 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 231
>gi|408826954|ref|ZP_11211844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
somaliensis DSM 40738]
Length = 328
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 71/98 (72%)
Query: 348 AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407
A G + EL R G K+ I SN+RLV+++A+ Y +G+ L DL+QEG GLVR
Sbjct: 78 AGGATREELERLAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAV 137
Query: 408 EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 138 EKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 175
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 91/133 (68%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 372 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 431
S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 338 KSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397
Query: 432 KSLSDQSRTIRLP 444
+S +R + +P
Sbjct: 398 TMVSRHARGVHIP 410
>gi|168029696|ref|XP_001767361.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens]
gi|162681425|gb|EDQ67852.1| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens]
Length = 632
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 3/152 (1%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE +L+ ++ + KLE L++VL ++ G PT +WAAAAGVD +RRRL G
Sbjct: 334 LLTAVEENRLAVFMKPMKKLEKLQKVLMKQLGRDPTDEEWAAAAGVDLLIMRRRLALGRA 393
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNL--QDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 423
+ K+I N+RLV+S A Y M+L QDL QEG GL++ +KFD KG++FSTY
Sbjct: 394 ARTKLIQRNLRLVLSQAYKYHKDSMSLSIQDLCQEGVIGLMQAVDKFDPGKGYRFSTYGI 453
Query: 424 WWIKQAVRKSLSDQSRTIRLP-VISHGRGNLQ 454
+WI+ ++ ++ + +R P +S R N+Q
Sbjct: 454 YWIRNSILRAQTKSGHMLRSPHNVSTHRVNIQ 485
>gi|154509177|ref|ZP_02044819.1| hypothetical protein ACTODO_01698 [Actinomyces odontolyticus ATCC
17982]
gi|153798811|gb|EDN81231.1| RNA polymerase sigma factor RpoD [Actinomyces odontolyticus ATCC
17982]
Length = 561
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 125/238 (52%), Gaps = 34/238 (14%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA-----NVMSVKSG---S 276
D EPT E+L+ E + E + + AE AA + + VK G S
Sbjct: 183 DFEPTGEDLEDPELGTETVDEDDVDAEDEAEEEDPKLAEGAALRERTNDGIHVKGGFVVS 242
Query: 277 TSRRKRPSVQEVDYS----DPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEG 327
S VQ+V + DP++ YL+ S LL A +E+ L+ AG+ KL+
Sbjct: 243 DSDETDEPVQQVTVAGATADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEYKLKN 301
Query: 328 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
+ ++ R ++REL G K+ ++ +N+RLV+S+AK Y G
Sbjct: 302 QADEMTSR----------------ERRELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTG 345
Query: 388 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 346 RGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 403
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 174 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 233
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 234 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 290
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 291 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 350
Query: 452 NLQSE 456
+Q E
Sbjct: 351 RIQRE 355
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 103/185 (55%), Gaps = 7/185 (3%)
Query: 276 STSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSER 335
+T R+ R + +D +R LL A +E+ L+ I+ L E + E
Sbjct: 170 ATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLAKRIEAGLYATHRMEEMEEA 229
Query: 336 CGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDL 395
A+ A +R+LR G K+ ++ +N+RLV+S+AK Y G GM DL
Sbjct: 230 FAAGDKDAKLTPAV---RRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDL 286
Query: 396 VQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRG 451
+QEG GL+R EKFD SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G
Sbjct: 287 IQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLG 346
Query: 452 NLQSE 456
+Q E
Sbjct: 347 RIQRE 351
>gi|357391472|ref|YP_004906313.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
gi|311897949|dbj|BAJ30357.1| putative RNA polymerase sigma factor [Kitasatospora setae KM-6054]
Length = 323
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 94/173 (54%), Gaps = 24/173 (13%)
Query: 278 SRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCG 337
+R RP+ E D YL + LL A EE++LS I+
Sbjct: 14 TRTARPTNLEADRDLVGMYLDEIARTP-LLDAAEEVELSLRIE----------------- 55
Query: 338 GSPTFAQ-----WAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNL 392
+ FAQ GV ELR KD I SN+RLV+++A+ Y +G+ L
Sbjct: 56 -AGVFAQHLLDEGEGLDGVSTEELRAIAEDAERAKDVFIRSNLRLVVAVARRYPRSGLPL 114
Query: 393 QDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
DL+QEG GLVR EKFD SKGFKFSTYA WWI+QA+ +S++DQSRTIRLPV
Sbjct: 115 LDLIQEGNAGLVRAVEKFDYSKGFKFSTYATWWIRQAITRSIADQSRTIRLPV 167
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR ++ G + AQ +R LN+
Sbjct: 195 LLNAEEEVELAKRIEAGLFATERLRRIME--SGEKISTAQ------------KRDLNWIS 240
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 241 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 300
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 301 YATWWIRQAITRAMADQARTIRIPV 325
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKINEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|159901184|ref|YP_001547431.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159894223|gb|ABX07303.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 375
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 89/162 (54%), Gaps = 22/162 (13%)
Query: 288 VDYSDPLRYLRATTSSSRLLTANEEM----QLSAGIQDLLKLEGLREVLSERCGGSPTFA 343
V DP+R LLTA+EE QL G + +++L +L E+
Sbjct: 73 VSLDDPVRMYLREIGQVHLLTAHEETMLAKQLERGERAMIRLARHEYLLEEKARLQQQVL 132
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+ AA + +I +N+RLV+SIAK Y G GM+ DL+QEG GL
Sbjct: 133 ESEAA------------------RQHLIQANLRLVVSIAKKYVGRGMSFLDLIQEGNIGL 174
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ +S+SD SRTIRLPV
Sbjct: 175 MRATEKFDYHKGFKFSTYATWWIRQAITRSISDHSRTIRLPV 216
>gi|453051815|gb|EME99312.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 379
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 15/156 (9%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E E+ P A
Sbjct: 80 SDLFRQYLREIGRIP-LLTAAEEVELARRVEAGLFAE-------EKLSNDPDLDTCLAL- 130
Query: 350 GVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEK 409
+L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EK
Sbjct: 131 -----DLDRLVVLGRMAKRRLIEANLRLVVSVAKRYIGRGLTMLDLVQEGNLGLIRAVEK 185
Query: 410 FDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
FD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 186 FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 221
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 255 KARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQ 314
KA + A+ A V + R+ R + +D +R LL A EE++
Sbjct: 144 KASKDADAKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVE 203
Query: 315 LSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY----GILCKDK 369
L+ I+ L E LR ++ G + AQ +R LN+ G K+
Sbjct: 204 LAKRIEAGLYATERLRRIME--SGEKISTAQ------------KRDLNWISRDGNRAKNH 249
Query: 370 MITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA 429
++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA
Sbjct: 250 LLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQA 309
Query: 430 VRKSLSDQSRTIRLPV 445
+ ++++DQ+RTIR+PV
Sbjct: 310 ITRAMADQARTIRIPV 325
>gi|318080032|ref|ZP_07987364.1| RNA polymerase sigma factor [Streptomyces sp. SA3_actF]
Length = 340
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 12/127 (9%)
Query: 343 AQWAAAAGVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEG 399
A+ A +D R +L R + G K ++I SN+RLV+S+AK Y G G+ + DLVQEG
Sbjct: 77 AKLAGPGPLDTRLALDLDRLVVLGRAAKRRLIESNLRLVVSVAKRYAGRGLTMLDLVQEG 136
Query: 400 CRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP---------VISHGR 450
GL+R EKFD ++GFKFSTYA WWI+QA+ ++L+DQ+RTIR+P V+ R
Sbjct: 137 NLGLIRAVEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 196
Query: 451 GNLQSEG 457
G LQ G
Sbjct: 197 GLLQERG 203
>gi|220912379|ref|YP_002487688.1| RpoD subfamily RNA polymerase sigma-70 subunit [Arthrobacter
chlorophenolicus A6]
gi|219859257|gb|ACL39599.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Arthrobacter
chlorophenolicus A6]
Length = 433
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ L+ I+ L E ++ ++ P +
Sbjct: 133 ADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLFAE--EKIAADDGSMEPKY-------- 182
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 183 --KRELEFIIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 240
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 241 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 275
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 89/141 (63%), Gaps = 11/141 (7%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGI 364
LL A EE++L+ I+ L E LR V E G Q +R+L+ + G
Sbjct: 226 LLNAEEEVELAKRIEAGLYAAERLRVVEEE---GEKLSTQM-------RRDLKWIVRDGE 275
Query: 365 LCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 424
K ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KGFKFSTYA W
Sbjct: 276 RAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATW 335
Query: 425 WIKQAVRKSLSDQSRTIRLPV 445
WI+QA+ ++++DQ+RTIR+PV
Sbjct: 336 WIRQAITRAMADQARTIRIPV 356
>gi|390439227|ref|ZP_10227637.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
gi|389837354|emb|CCI31761.1| putative RNA polymerase sigma-C factor [Microcystis sp. T1-4]
Length = 414
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 74/102 (72%)
Query: 344 QWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+WA AG++ EL + G K++MI +N+RLV+S+AK YQ G+ L DL+QEG GL
Sbjct: 153 RWAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGL 212
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+ +KFD SKG++FSTYA+WWI+Q + ++++ QSR IRLPV
Sbjct: 213 EQAVKKFDPSKGYRFSTYAYWWIRQGMTRAIATQSRLIRLPV 254
>gi|357399134|ref|YP_004911059.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|386355181|ref|YP_006053427.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337765543|emb|CCB74252.1| RNA polymerase principal sigma factor hrdA [Streptomyces cattleya
NRRL 8057 = DSM 46488]
gi|365805689|gb|AEW93905.1| RNA polymerase sigma factor [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 393
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 14/150 (9%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YLR LLTA EE++L+ ++ L E E+ +P A +
Sbjct: 100 YLREIGRIP-LLTAEEEVELARRVEAGLFAE-------EKLEHTPDLDTRLAG------D 145
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G
Sbjct: 146 LDRLVVLGRIAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG 205
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 206 YKFSTYATWWIRQAMSRALADQARTIRVPV 235
>gi|291301996|ref|YP_003513274.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290571216|gb|ADD44181.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 559
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 92/145 (63%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A +E++L+ I+ L +E LR+ L E PT ++RR L +
Sbjct: 271 LLNAAQEVELAKRIEAGLYAVERLRQ-LKEAGEEIPT-------------QVRRDLEWVT 316
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KGFKFST
Sbjct: 317 RDGDRAKNHLLAANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFST 376
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 377 YATWWIRQAITRAMADQARTIRIPV 401
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 91/133 (68%)
Query: 312 EMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMI 371
E ++S G++ + +E +R L E G + + WAAAAG++++ L R L+YG C+D+++
Sbjct: 278 ETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELV 337
Query: 372 TSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 431
S LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 338 KSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMS 397
Query: 432 KSLSDQSRTIRLP 444
+S +R + +P
Sbjct: 398 TMVSRHARGVHIP 410
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 23/160 (14%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E LR V+ G + AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFATERLRRVME--SGEKLSVAQ------------RRDLSWIS 223
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
YA WWI+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 323
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + + LLT EE++L +Q ++ VL+E + ++
Sbjct: 17 NDPISWYLSNIGRVPLLTPAEEIELGNQVQKMM-------VLTEDGQLNEKTKEFTPQD- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|399525366|ref|ZP_10765810.1| RNA polymerase sigma factor RpoD [Atopobium sp. ICM58]
gi|398373259|gb|EJN51219.1| RNA polymerase sigma factor RpoD [Atopobium sp. ICM58]
Length = 488
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 22/160 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQW 345
+DP++ YL+ S LL A +E+ L+ AG+ KL+ + ++ R
Sbjct: 188 ADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEFKLKNQADEMTSR---------- 236
Query: 346 AAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
++REL G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 237 ------ERRELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIR 290
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 291 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 330
>gi|406995970|gb|EKE14509.1| hypothetical protein ACD_12C00462G0001, partial [uncultured
bacterium]
Length = 272
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 66/80 (82%)
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K K++ SN+RLV+SIAK Y G GM+L DL+QEG +GL+R EK+D KGFKFSTYA WW
Sbjct: 175 AKKKLVESNLRLVVSIAKKYIGRGMSLLDLIQEGNQGLIRAVEKYDWRKGFKFSTYATWW 234
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 235 IRQAITRAIADQARTIRIPV 254
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 92/144 (63%), Gaps = 17/144 (11%)
Query: 306 LLTANEEMQLS----AGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLN 361
LL A +E+ L+ AG+ K+E ++E E+ SP + +R+LR
Sbjct: 248 LLNAEQEVSLAKRIEAGLYATYKMEQIKES-GEKV--SP----------MQKRDLREIDR 294
Query: 362 YGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 421
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFSTY
Sbjct: 295 DGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTY 354
Query: 422 AHWWIKQAVRKSLSDQSRTIRLPV 445
A WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 355 ATWWIRQAITRAMADQARTIRIPV 378
>gi|406914403|gb|EKD53587.1| hypothetical protein ACD_61C00009G0004 [uncultured bacterium]
Length = 367
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 65/80 (81%)
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
KD + SN+RLV+SIAK Y G GM+ DL+QEG +GL+R EK+D +KGFKFSTYA WW
Sbjct: 130 AKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFKFSTYATWW 189
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++++DQ+RTIR+PV
Sbjct: 190 IRQAITRAIADQARTIRIPV 209
>gi|302534283|ref|ZP_07286625.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
gi|302443178|gb|EFL14994.1| RNA polymerase sigma factor RpoS [Streptomyces sp. C]
Length = 361
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ G+ A +L + + G +
Sbjct: 77 LLTAAEEVELARRVEAGLFAE-------EKLAGATDLDSQLAV------DLDKLVVMGRM 123
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I SN+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 124 AKRRLIESNLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 183
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 184 IRQAMSRALADQARTIRVPV 203
>gi|145596092|ref|YP_001160389.1| RpoD family RNA polymerase sigma factor [Salinispora tropica
CNB-440]
gi|145305429|gb|ABP56011.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora tropica
CNB-440]
Length = 332
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 72/97 (74%)
Query: 349 AGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 408
AGV++ EL+R + G KD I +N+RLV+SIA+ Y +GM + DL+QEG GLVR E
Sbjct: 79 AGVEKAELQRLVAEGARAKDLFIRANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRAVE 138
Query: 409 KFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KFD +GFKFSTYA WWI+QA+ ++++ Q RT+RLPV
Sbjct: 139 KFDYERGFKFSTYATWWIRQAISRAIAQQERTVRLPV 175
>gi|441518658|ref|ZP_21000373.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454472|dbj|GAC58334.1| RNA polymerase sigma factor SigB [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 322
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 274 SGSTSRRKRPSVQEVDYSDP----LRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLR 329
S +T R P+ Q++D P +R + LL A +E+ L+ I+ L L
Sbjct: 2 STATRTRPAPTAQDLDAQSPSADLVRVYLNGIGRTALLNAEQEVDLAKAIEVGLYARHLL 61
Query: 330 EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAG 389
+ ++R G + +R+L + G + ++ +N+RLV+S+AK Y G G
Sbjct: 62 DT-TKRMGPAR------------KRDLNILVREGEQARAHLLEANLRLVVSLAKRYTGRG 108
Query: 390 MNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
M L DL+QEG GL+R EKFD +KGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 109 MPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAISRGMADQSRTIRLPV 164
>gi|119961685|ref|YP_947521.1| RNA polymerase sigma (70) factor RpoD [Arthrobacter aurescens TC1]
gi|403526728|ref|YP_006661615.1| RNA polymerase principal sigma factor HrdB [Arthrobacter sp.
Rue61a]
gi|119948544|gb|ABM07455.1| RNA polymerase sigma (70) factor RpoD [Arthrobacter aurescens TC1]
gi|403229155|gb|AFR28577.1| RNA polymerase principal sigma factor HrdB [Arthrobacter sp.
Rue61a]
Length = 437
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 71/93 (76%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+REL ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 187 KRELEFVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDY 246
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 247 TKGFKFSTYATWWIRQAITRAMADQARTIRIPV 279
>gi|456390566|gb|EMF55961.1| hrdA protein [Streptomyces bottropensis ATCC 25435]
Length = 405
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 21/159 (13%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
SD R YLR LLTA EE++L+ ++ L E ER G A+
Sbjct: 106 SDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------ERLGN---------AS 148
Query: 350 GVDQR---ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 406
+D R +L + + G + K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R
Sbjct: 149 DLDTRLALDLDKLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRA 208
Query: 407 AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 209 VEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 247
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 19/145 (13%)
Query: 306 LLTANEEMQLSAGIQ-DLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNY-- 362
LL A EE++L+ I+ L E +R ++ G T AQ RR L++
Sbjct: 178 LLNAEEEVELAKRIEAGLFSTERMRRIME--SGEKLTVAQ------------RRDLSWIA 223
Query: 363 --GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFST 420
G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD +KG+KFST
Sbjct: 224 RDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 283
Query: 421 YAHWWIKQAVRKSLSDQSRTIRLPV 445
YA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 284 YATWWIRQAITRAMADQARTIRIPV 308
>gi|415718247|ref|ZP_11467229.1| RNA polymerase sigma factor [Gardnerella vaginalis 1500E]
gi|388060076|gb|EIK82777.1| RNA polymerase sigma factor [Gardnerella vaginalis 1500E]
Length = 497
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 94/162 (58%), Gaps = 26/162 (16%)
Query: 291 SDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAA 349
+DP++ YL+ S LL A +E+ LS I+ GL +AQ
Sbjct: 196 ADPVKDYLKQIGRVS-LLNAEQEVDLSERIE-----AGL-------------YAQHLLDT 236
Query: 350 GVDQRELRRRLNY------GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 403
+D E +R+ G KD ++ +N+RLV+S+AK Y G GM DL+QEG GL
Sbjct: 237 EIDSMEFKRKRELKWAAADGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGL 296
Query: 404 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+R EKFD KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 297 IRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPV 338
>gi|148242803|ref|YP_001227960.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851113|emb|CAK28607.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 309
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 18/155 (11%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + ++ LLT EE++L +Q ++ T + A
Sbjct: 17 NDPVSWYLSSIGRVPLLTPAEEIELGNQVQTMM-----------------TLVEQGEEAT 59
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
RE ++ + G K++M+ +N+RLV+S+AK YQG G+ L DL+QEG GL R EKF
Sbjct: 60 YTARE-KKLIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKF 118
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 119 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 153
>gi|406993818|gb|EKE12911.1| hypothetical protein ACD_13C00122G0001 [uncultured bacterium]
Length = 359
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 89/139 (64%), Gaps = 14/139 (10%)
Query: 314 QLSAGIQDLLKLEGL------REVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL-C 366
+L I+ L KLEG+ R+ L E G P + D+ EL +R
Sbjct: 70 KLDREIELLTKLEGIESTDPVRQYLRE-IGRVPLLS------AEDEVELAKRYEKADRRA 122
Query: 367 KDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWI 426
KDK+ SN+RLV+SIAK Y G G++L DL+QEG +GL+R EK+D KGFKFSTYA WWI
Sbjct: 123 KDKLTESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRKGFKFSTYATWWI 182
Query: 427 KQAVRKSLSDQSRTIRLPV 445
+QA+ ++++DQ+RTIR+PV
Sbjct: 183 RQAITRAIADQARTIRIPV 201
>gi|332670669|ref|YP_004453677.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cellulomonas fimi
ATCC 484]
gi|332339707|gb|AEE46290.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulomonas fimi
ATCC 484]
Length = 538
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E++L+ I+ GL FA+ AG
Sbjct: 239 ADPVKDYLKQIGKVALLNAEQEVELAKRIE-----AGL-------------FAEERLNAG 280
Query: 351 VD-QRELRRRLNY----GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
V + +LRR L + G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R
Sbjct: 281 VAMEPKLRRELEWIAGDGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIR 340
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 341 AVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 380
>gi|443325525|ref|ZP_21054216.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
gi|442794846|gb|ELS04242.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
Length = 294
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 22/150 (14%)
Query: 296 YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRE 355
YL+A LLT EE+ L+ IQ +L L ++++ E
Sbjct: 11 YLKAIGRIP-LLTGEEEVILANQIQAMLPLLDKKDLVLEE-------------------- 49
Query: 356 LRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKG 415
++ + G K KM+ +N+RLV+SIAK YQ G+ L DL+QEG GL+RGAEKFD SKG
Sbjct: 50 -KKIVQNGQRAKRKMVQANLRLVVSIAKKYQNRGLTLLDLIQEGSIGLMRGAEKFDPSKG 108
Query: 416 FKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
+KFSTY++WWI+QA+ +++++Q+R IRLP+
Sbjct: 109 YKFSTYSYWWIRQAMTRAIANQARIIRLPL 138
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 70/93 (75%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|325962990|ref|YP_004240896.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469077|gb|ADX72762.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 437
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 12/155 (7%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP++ LL A +E+ L+ I+ L E ++ ++ P +
Sbjct: 137 ADPVKDYLKQIGKVALLNAEQEVDLALRIEAGLFAE--EKINADDGSMDPKY-------- 186
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+REL ++ G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKF
Sbjct: 187 --KRELEFIIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKF 244
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D +KGFKFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 245 DYTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 279
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 93/155 (60%), Gaps = 14/155 (9%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+DP+ + LLT EE++L +Q ++ +L+E + ++
Sbjct: 17 NDPISWYLQNIGRVPLLTPAEEIELGNQVQKMM-------ILTEDGQLNEKVNEFTTQQ- 68
Query: 351 VDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 410
+R + G K++M+ +N+RLV+S+AK YQG G+ L DLVQEG GL R EKF
Sbjct: 69 ------KRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKF 122
Query: 411 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
D ++G+KFSTYA WWI+Q++ ++++ QSRTIRLPV
Sbjct: 123 DPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPV 157
>gi|395772635|ref|ZP_10453150.1| RNA polymerase sigma factor [Streptomyces acidiscabies 84-104]
Length = 362
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 15/167 (8%)
Query: 280 RKRPSVQEVDYSDPLR-YLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGG 338
R RP+ SD R YLR LLTA EE++L+ ++ L E E+
Sbjct: 52 RIRPADTGGPSSDLFRQYLREIGRIP-LLTAVEEVELARRVEAGLFAE-------EKLLN 103
Query: 339 SPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQE 398
+P A +L R + G + K ++I +N+RLV+S+AK Y G G+ + DLVQE
Sbjct: 104 TPDLDSQLAL------DLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQE 157
Query: 399 GCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
G GL+R EKFD ++G+KFSTYA WWI+QA+ ++L+DQ+RTIR+PV
Sbjct: 158 GNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPV 204
>gi|383647771|ref|ZP_09958177.1| RNA polymerase sigma factor [Streptomyces chartreusis NRRL 12338]
Length = 430
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 13/140 (9%)
Query: 306 LLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGIL 365
LLTA EE++L+ ++ L E E+ +P A +L R + G +
Sbjct: 146 LLTAAEEVELARRVEAGLFAE-------EKLRLAPDLDSQLAL------DLDRLVVMGRM 192
Query: 366 CKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 425
K ++I +N+RLV+S+AK Y G G+ + DLVQEG GL+R EKFD ++G+KFSTYA WW
Sbjct: 193 AKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWW 252
Query: 426 IKQAVRKSLSDQSRTIRLPV 445
I+QA+ ++L+DQ+RTIR+PV
Sbjct: 253 IRQAMSRALADQARTIRVPV 272
>gi|427390144|ref|ZP_18884550.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733159|gb|EKU95965.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 585
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 69/92 (75%)
Query: 354 RELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 413
RELR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GLVR EKFD +
Sbjct: 336 RELRIIARDGRSAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLVRAVEKFDYT 395
Query: 414 KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
KG+KFSTYA WWI+QA+ ++++DQSRTIR+PV
Sbjct: 396 KGYKFSTYATWWIRQAITRAMADQSRTIRIPV 427
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+R+LR G K+ ++ +N+RLV+S+AK Y G GM DL+QEG GL+R EKFD
Sbjct: 256 KRDLRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 315
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV----ISHGRGNLQSE 456
SKG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV + + G +Q E
Sbjct: 316 SKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRE 363
>gi|375094942|ref|ZP_09741207.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655675|gb|EHR50508.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 346
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 90/160 (56%), Gaps = 23/160 (14%)
Query: 291 SDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAG 350
+D +R + LLTA EE+ L+ I+ + FAQ
Sbjct: 47 ADLVRVYLNGIGKTALLTAEEEVDLAKRIE------------------AGVFAQHVLDTA 88
Query: 351 VD---QR--ELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVR 405
D QR EL + G K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R
Sbjct: 89 EDLPRQRRVELTALVRDGQRAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIR 148
Query: 406 GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
EKFD SKGFKFSTYA WWI+QA+ + ++DQ RTIRLPV
Sbjct: 149 AVEKFDYSKGFKFSTYATWWIRQAITRGMADQGRTIRLPV 188
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 70/93 (75%)
Query: 353 QRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA 412
+R+L+ + G + ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD
Sbjct: 79 KRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 138
Query: 413 SKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
SKGFKFSTYA WWI+QA+ + ++DQSRTIRLPV
Sbjct: 139 SKGFKFSTYATWWIRQAITRGMADQSRTIRLPV 171
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 102/181 (56%), Gaps = 3/181 (1%)
Query: 265 AAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLK 324
A A+V +T R+ R Q +D +R LL A +E+ L+ I+ L
Sbjct: 136 AGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGKVALLNAEQEVSLAERIEAGLY 195
Query: 325 LEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKN 384
+ + + A+ + A +R+LR G K+ ++ +N+RLV+S+AK
Sbjct: 196 AQHRMDEMERLTAEGDAAAKLSPAQ---KRDLRWIARDGRKAKNHLLEANLRLVVSLAKR 252
Query: 385 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 444
Y G GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+P
Sbjct: 253 YTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIP 312
Query: 445 V 445
V
Sbjct: 313 V 313
>gi|293189827|ref|ZP_06608541.1| carbamoyl-phosphate synthase L chain, ATP-binding [Actinomyces
odontolyticus F0309]
gi|292821242|gb|EFF80187.1| carbamoyl-phosphate synthase L chain, ATP-binding [Actinomyces
odontolyticus F0309]
Length = 561
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 125/238 (52%), Gaps = 34/238 (14%)
Query: 225 DLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAA-----NVMSVKSG---S 276
D EPT E+L+ E + E + + AE AA + + VK G S
Sbjct: 183 DFEPTGEDLEDPELGTETVDEDDVDAEDEAEEEDPKLAEGAALRERTNDGIHVKGGFVVS 242
Query: 277 TSRRKRPSVQEVDYS----DPLR-YLRATTSSSRLLTANEEMQLS----AGIQDLLKLEG 327
S VQ+V + DP++ YL+ S LL A +E+ L+ AG+ KL+
Sbjct: 243 DSDETDEPVQQVTVAGATADPVKDYLKQIGKVS-LLNAEQEVDLARRIEAGLYAEYKLKN 301
Query: 328 LREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQG 387
+ ++ R ++REL G K+ ++ +N+RLV+S+AK Y G
Sbjct: 302 QADEMTSR----------------ERRELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTG 345
Query: 388 AGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPV 445
GM DL+QEG GL+R EKFD +KG+KFSTYA WWI+QA+ ++++DQ+RTIR+PV
Sbjct: 346 RGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 403
>gi|300784474|ref|YP_003764765.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|399536359|ref|YP_006549021.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
gi|299793988|gb|ADJ44363.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei U32]
gi|398317129|gb|AFO76076.1| RNA polymerase primary-like sigma factor [Amycolatopsis
mediterranei S699]
Length = 343
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 65/83 (78%)
Query: 363 GILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 422
G + K+ ++ +N+RLV+S+AK Y G GM L DL+QEG GL+R EKFD SKGFKFSTYA
Sbjct: 103 GHVAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYSKGFKFSTYA 162
Query: 423 HWWIKQAVRKSLSDQSRTIRLPV 445
WWI+QA+ + ++DQ RTIRLPV
Sbjct: 163 TWWIRQAITRGMADQGRTIRLPV 185
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 13/192 (6%)
Query: 260 RAAEKAAANVMSVKSGSTSRRKR-PSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAG 318
+ A++ M +K KR +Q++D D + L+ +L EE S G
Sbjct: 234 KIADELKELYMKLKRKEKDLNKRIKRLQKID-PDVEKLLKGDYDDPEILKKIEENGFSFG 292
Query: 319 IQDLLKLEGLR-----EVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITS 373
++L+ E L+ E L E G PT ++ + Q E R+ +N K K++ S
Sbjct: 293 RFEILRTETLKLQEEIEELKEMIGTVPT--EFDHVINIIQ-EGRKEVNE---TKQKIVQS 346
Query: 374 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKS 433
N+RLV+SIAK Y G+ DL+QEG GL++ +KFD KG+KFSTYA WWI+QA+ ++
Sbjct: 347 NLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATWWIRQAITRA 406
Query: 434 LSDQSRTIRLPV 445
++DQ+RTIR+PV
Sbjct: 407 IADQARTIRIPV 418
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.124 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,263,652,054
Number of Sequences: 23463169
Number of extensions: 234004499
Number of successful extensions: 817240
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10568
Number of HSP's successfully gapped in prelim test: 1257
Number of HSP's that attempted gapping in prelim test: 802150
Number of HSP's gapped (non-prelim): 15031
length of query: 458
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 312
effective length of database: 8,933,572,693
effective search space: 2787274680216
effective search space used: 2787274680216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)