BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012711
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 311 bits (797), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 257/441 (58%), Gaps = 29/441 (6%)
Query: 8 KDFKTFFYTQTLDHFNYRPDSYATFQQRYVINFKHWGGSNSSAPIFVYLGAEGSLDEDLD 67
K++ ++ Q +DHF + ++ TF QRY++ K+W + S I Y G EG + +
Sbjct: 1 KNYSVLYFQQKVDHFGF--NTVKTFNQRYLVADKYWKKNGGS--ILFYTGNEGDIIWFCN 56
Query: 68 VAGFLPDNAPRFKALLVYIEHRYYGKSVPFGSREEAMKNASTLGYFNSAQAIADYADVLL 127
GF+ D A KA+LV+ EHRYYG+S+PFG + + K++ L + S QA+AD+A+++
Sbjct: 57 NTGFMWDVAEELKAMLVFAEHRYYGESLPFG--DNSFKDSRHLNFLTSEQALADFAELIK 114
Query: 128 HIKKKY-SAERSPSIVVGGSYGGMLAAWFRLKYPHIALGALASSAPILYFHDTAPQVGYY 186
H+K+ AE P I +GGSYGGMLAAWFR+KYPH+ +GALA+SAPI F D P +
Sbjct: 115 HLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFM 174
Query: 187 TIVTKDFKETSQSCYETVRKSWDEIRKVASRPNGLSMLSKKFRTCKPL--KKTSELEDFL 244
IVT DF+++ C E++ +SWD I ++++ +GL L+ C PL + L+D++
Sbjct: 175 KIVTTDFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQDIQHLKDWI 234
Query: 245 DSLYTDVAQYDDP---------PTYPLSIVCGGIDGAPTGID--VLGKIFKGVVA---YK 290
+ ++A D P P +P+ +VC + P D +L IF+ + Y
Sbjct: 235 SETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKN-PNVSDSLLLQNIFQALNVYYNYS 293
Query: 291 GNRSCYDMDEYIRPTETNVGWRWQTCSEMVMPIGHGHKDTMFPPAPFDLNRFTKDCEGTF 350
G C ++ E + +GW +Q C+E+VMP D MF P ++L + DC +
Sbjct: 294 GQVKCLNISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQW 353
Query: 351 GVKPKPHWVTTYYGGRDLKLILHRFGSNIIFSNGLRDPYSTGGVLGNISDSVVAISTVNG 410
GV+P+P W+TT YGG+++ +NI+FSNG DP+S GGV +I+D++VA++ G
Sbjct: 354 GVRPRPSWITTMYGGKNIS-----SHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEG 408
Query: 411 SHCLDILPESKSDPQWLVMQR 431
+H LD+ ++ DP +++ R
Sbjct: 409 AHHLDLRTKNALDPMSVLLAR 429
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/443 (33%), Positives = 228/443 (51%), Gaps = 32/443 (7%)
Query: 10 FKTFFYTQTLDHFNYRPDSYATFQQRYVINFKHWGGSNSSAPIFVYLGAEGSLDEDLDVA 69
F+ F+ Q LDHFN+ TF QR++++ + W PIF Y G EG + + +
Sbjct: 8 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDVWAFANNS 65
Query: 70 GFLPDNAPRFKALLVYIEHRYYGKSVPFGSREEAMKNASTLGYFNSAQAIADYADVLLHI 129
F+ + A ALLV+ EHRYYGKS+PFG++ + L QA+AD+A++L +
Sbjct: 66 AFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELLRAL 122
Query: 130 KKKYSAERSPSIVVGGSYGGMLAAWFRLKYPHIALGALASSAPILYFHDTAPQVGYYTIV 189
++ A+ +P+I GGSYGGML+A+ R+KYPH+ GALA+SAP+L ++ V
Sbjct: 123 RRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDV 182
Query: 190 TKDFKETSQSCYETVRKSWDEIRKVASRPNGLSMLSKKFRTCKPL---KKTSELEDFLDS 246
T DF+ S C + VR+++ +I+ + + + +F TC+PL K ++L F +
Sbjct: 183 TADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFMFARN 241
Query: 247 LYTDVAQYDDP---------PTYPLSIVCGGIDGAPTGIDVLGKIFKGVVAYKGNRSCYD 297
+T +A D P P P+ + C + I L + V G+ CYD
Sbjct: 242 AFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYD 301
Query: 298 M----DEYIRPTETNVG-----WRWQTCSEMVMPIGHGHKDTMFPPAPFDLNRFTKDCEG 348
+ PT G W +Q C+E+ + + MFP PF + C
Sbjct: 302 IYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLD 361
Query: 349 TFGVKPKPHWVTTYYGGRDLKLILHRFGSNIIFSNGLRDPYSTGGVLGNISDSVVAISTV 408
T+GV P+P W+ T + G DL R SNIIFSNG DP++ GG+ N+S SV+A++
Sbjct: 362 TWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQ 416
Query: 409 NGSHCLDILPESKSDPQWLVMQR 431
G+H LD+ DP +V R
Sbjct: 417 GGAHHLDLRASHPEDPASVVEAR 439
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 225/443 (50%), Gaps = 32/443 (7%)
Query: 10 FKTFFYTQTLDHFNYRPDSYATFQQRYVINFKHWGGSNSSAPIFVYLGAEGSLDEDLDVA 69
F+ F+ Q LDHFN+ TF QR++++ + W PIF Y G EG + + +
Sbjct: 5 FQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFW--VRGEGPIFFYTGNEGDVWAFANNS 62
Query: 70 GFLPDNAPRFKALLVYIEHRYYGKSVPFGSREEAMKNASTLGYFNSAQAIADYADVLLHI 129
F+ + A ALLV+ EHRYYGKS+PFG++ + L QA+AD+A++L +
Sbjct: 63 AFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELL---TVEQALADFAELLRAL 119
Query: 130 KKKYSAERSPSIVVGGSYGGMLAAWFRLKYPHIALGALASSAPILYFHDTAPQVGYYTIV 189
++ A+ +P+I GGSYGG L+A+ R KYPH+ GALA+SAP+L ++ V
Sbjct: 120 RRDLGAQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFFRDV 179
Query: 190 TKDFKETSQSCYETVRKSWDEIRKVASRPNGLSMLSKKFRTCKPL---KKTSELEDFLDS 246
T DF+ S C + VR+++ +I+ + + + +F TC+PL K ++L F +
Sbjct: 180 TADFEGQSPKCTQGVREAFRQIKDLFLQ-GAYDTVRWEFGTCQPLSDEKDLTQLFXFARN 238
Query: 247 LYTDVAQYDDP---------PTYPLSIVCGGIDGAPTGIDVLGKIFKGVVAYKGNRSCYD 297
+T +A D P P P+ + C + I L + V G+ CYD
Sbjct: 239 AFTVLAXXDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYD 298
Query: 298 M----DEYIRPTETNVG-----WRWQTCSEMVMPIGHGHKDTMFPPAPFDLNRFTKDCEG 348
+ PT G W +Q C+E+ + + FP PF + C
Sbjct: 299 IYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQRYCLD 358
Query: 349 TFGVKPKPHWVTTYYGGRDLKLILHRFGSNIIFSNGLRDPYSTGGVLGNISDSVVAISTV 408
T+GV P+P W+ T + G DL R SNIIFSNG DP++ GG+ N+S SV+A++
Sbjct: 359 TWGVWPRPDWLLTSFWGGDL-----RAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQ 413
Query: 409 NGSHCLDILPESKSDPQWLVMQR 431
G+H LD+ DP +V R
Sbjct: 414 GGAHHLDLRASHPEDPASVVEAR 436
>pdb|1YKD|A Chain A, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
pdb|1YKD|B Chain B, Crystal Structure Of The Tandem Gaf Domains From A
Cyanobacterial Adenylyl Cyclase: Novel Modes Of
Ligand-Binding And Dimerization
Length = 398
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 279 LGKIFKGVVAYKGNRSCYDMDEYIRPTETNV-------GWRWQTCSEMVMPIGHGHKDTM 331
+GK F G+VA G + D Y P G+R TCS + MP+ +G ++ +
Sbjct: 265 IGKGFAGIVAASGQKLNIPFDLYDHPDSATAKQIDQQNGYR--TCSLLCMPVFNGDQELI 322
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 53 FVYLGAEGSLDEDLDVAGFLPDNAPRFKAL 82
F +L G L E+LD+ FLP +FK+L
Sbjct: 306 FYWLDLYGILGENLDIQNFLPLETSKFKSL 335
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 53 FVYLGAEGSLDEDLDVAGFLPDNAPRFKAL 82
F +L G L E+LD+ FLP +FK+L
Sbjct: 87 FYWLDLYGILGENLDIQNFLPLETSKFKSL 116
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 219 NGLSMLSKKFRTCKPLKKTSELEDFLDSLYTDVAQYDDPPTYPLSIVCGGIDGAPTGI-- 276
+GL ++ + T K L SEL++ + ++YT D P Y L V ID I
Sbjct: 72 DGLDLVKQYEETLKLL---SELDNLIGTIYTKAQNKIDKPVY-LKKVITXIDEEQWLIXD 127
Query: 277 -DVLGKIFKGVVAYKGNRSCYDMDEYIRP 304
DV G I++ ++ G +Y P
Sbjct: 128 GDVKGAIYESILEKNGQDKKSGAGQYFTP 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,968,785
Number of Sequences: 62578
Number of extensions: 672620
Number of successful extensions: 1693
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 7
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)