BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012712
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
TD R ++ + G+ + A+ E G E + G H + + P P
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 165 VFYTCGEDGLVQ 176
V + ED ++Q
Sbjct: 391 VICSVSEDNIMQ 402
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 143/377 (37%), Gaps = 48/377 (12%)
Query: 43 ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97
AS+D ++L + L H VN V+F DG + S SDD+ V LW+ + L
Sbjct: 239 ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL--L 296
Query: 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157
+GH+ +V+ P D ++I + + D V+ + R G + L H +A
Sbjct: 297 QTLTGHSSSVWGVAFSP--DGQTIASASDDKTVK---LWNRNGQHLQTLTGHSSSVWGVA 351
Query: 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217
P + +D V+ ++ R G + T R +A P +
Sbjct: 352 FSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR----------GVAFSP-DGQ 398
Query: 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277
A A D+ +L++ GQ L G + G+AFS + +
Sbjct: 399 TIASASDDKTVKLWNRN----------GQ-----LLQTLTG-HSSSVWGVAFSPDDQTIA 442
Query: 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA-SEMGSDHTSAASPSTANTDVRIAP--Q 334
S +D+ G S R A S G SA+ T R Q
Sbjct: 443 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 502
Query: 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394
GH + +V+GV F P + + S SD + +W + G+L++ + V +
Sbjct: 503 TLTGHSS--SVRGV-AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFS 558
Query: 395 PHSTVLASSGIESDIKI 411
P +AS+ + +K+
Sbjct: 559 PDGQTIASASSDKTVKL 575
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 145/385 (37%), Gaps = 43/385 (11%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+L+ H V V+F+ DG + S SDD+ V LW+ + L +GH+ +V+ P
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSP- 67
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175
D ++I + + D V+ + R G + L H +A P + +D V
Sbjct: 68 -DGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTV 122
Query: 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235
+ ++ R G + T ++ +A P + A A D+ +L++
Sbjct: 123 KLWN-RNGQLLQTLTGHS----------SSVWGVAFSP-DGQTIASASDDKTVKLWNRN- 169
Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295
GQ L G + G+AFS + + S +D+ G
Sbjct: 170 ---------GQ-----LLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 214
Query: 296 NPPPSSPVSTRSEA-SEMGSDHTSAASPSTANTDVRIAP--QVYKGHRNCVTVKGVNFFG 352
S R A S G SA+ T R Q GH + +V GV F
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS--SVNGVAFR- 271
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412
P + + S SD + +W + G+L++ + V + P +AS+ + +K+
Sbjct: 272 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Query: 413 TPNAADRATLPTNIEQVCFSIYSAD 437
N TL + V +S D
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPD 355
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/403 (21%), Positives = 152/403 (37%), Gaps = 48/403 (11%)
Query: 43 ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97
AS+D ++L + L H V V+F+ DG + S SDD+ V LW+ + L
Sbjct: 75 ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--L 132
Query: 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157
+GH+ +V+ P D ++I + + D V+ + R G + L H +A
Sbjct: 133 QTLTGHSSSVWGVAFSP--DGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVA 187
Query: 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217
P + +D V+ ++ R G + T R +A P +
Sbjct: 188 FSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR----------GVAFSP-DGQ 234
Query: 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277
A A D+ +L++ GQ L G + G+AF + +
Sbjct: 235 TIASASDDKTVKLWNRN----------GQ-----LLQTLTG-HSSSVNGVAFRPDGQTIA 278
Query: 278 SY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP--Q 334
S +D+ + L+ ++ L S S G SA+ T R Q
Sbjct: 279 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ 338
Query: 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394
GH + +V GV F P + + S SD + +W + G+L++ + V +
Sbjct: 339 TLTGHSS--SVWGV-AFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS 394
Query: 395 PHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSAD 437
P +AS+ + +K+ N TL + V +S D
Sbjct: 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 437
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/401 (21%), Positives = 149/401 (37%), Gaps = 51/401 (12%)
Query: 43 ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL 97
AS+D ++L + L H V V+F+ DG + S SDD+ V LW+ + L
Sbjct: 157 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--L 214
Query: 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157
+GH+ +V P D ++I + + D V+ + R G + L H + +A
Sbjct: 215 QTLTGHSSSVRGVAFSP--DGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVNGVA 269
Query: 158 IEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217
P + +D V+ ++ R G + T ++ +A P +
Sbjct: 270 FRP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHS----------SSVWGVAFSP-DGQ 316
Query: 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277
A A D+ +L++ GQ + G+AFS + +
Sbjct: 317 TIASASDDKTVKLWNRN----------GQHLQTLTG------HSSSVWGVAFSPDGQTIA 360
Query: 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEA-SEMGSDHTSAASPSTANTDVRIAP--Q 334
S +D+ G S R A S G SA+ T R Q
Sbjct: 361 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 420
Query: 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394
GH + V GV F P + + S SD + +W + G+L++ + V +
Sbjct: 421 TLTGHSSSV--WGV-AFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFS 476
Query: 395 PHSTVLASSGIESDIKILTPNAADRATL---PTNIEQVCFS 432
P +AS+ + +K+ N TL +++ V FS
Sbjct: 477 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 517
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 43 ASEDLVLRL-----GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
AS+D ++L + L H V V+F+ DG + S S D+ V LW+
Sbjct: 526 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ + P
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
TD R ++ + G+ + + E G E + G H + + P P
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 165 VFYTCGEDGLVQ 176
V + ED ++Q
Sbjct: 389 VICSVSEDNIMQ 400
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ P
Sbjct: 271 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH 330
Query: 116 ---------TDDR-SIVTCAADGQVRHAQILERGGVETKLL-GKHQGRAHKLAIEPGSPH 164
TD R ++ + G+ + A+ E G E + G H + + P P
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 390
Query: 165 VFYTCGEDGLVQ 176
V + ED + Q
Sbjct: 391 VICSVSEDNIXQ 402
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ + P
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
+ +I+ + + H L + G E + G H + + P
Sbjct: 335 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 163 PHVFYTCGEDGLVQ 176
P + + ED ++Q
Sbjct: 393 PWIICSVSEDNIMQ 406
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ + P
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
+ +I+ + + H L + G E + G H + + P
Sbjct: 333 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 163 PHVFYTCGEDGLVQ 176
P + + ED ++Q
Sbjct: 391 PWIICSVSEDNIMQ 404
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+D H VN +SFN + IL +GS D+ V LWD + ++KL H D +FQ + P
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 116 TDDRSIVTCAADGQVRHAQILERGGVETK-------------LLGKHQGRAHKLAIEPGS 162
+ +I+ + + H L + G E + G H + + P
Sbjct: 337 --NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 163 PHVFYTCGEDGLVQ 176
P + + ED ++Q
Sbjct: 395 PWIICSVSEDNIMQ 408
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/361 (19%), Positives = 141/361 (39%), Gaps = 80/361 (22%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 74
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 132
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 133 SVRIWDVKTG-----MCLKTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 180
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY---NDEFIYLFTQD 290
T GQ C LI D+ ++ + FS + +++ ND ++ +++
Sbjct: 181 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350
L + Y GH+N NF
Sbjct: 228 KCL----------------------------------------KTYTGHKNEKYCIFANF 247
Query: 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKT 307
Query: 411 I 411
I
Sbjct: 308 I 308
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G+ K L H
Sbjct: 101 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGMCLKTLPAHSDPV 155
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 156 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 205
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 206 --NGKYILAATLDNDLKLWDYSKGK 228
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 74
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 132
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 133 SVRIWDVKTG-----MCLKTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 180
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 181 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 228 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 249
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 250 TGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G+ K L H
Sbjct: 101 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGMCLKTLPAHSDPV 155
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 156 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 205
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 206 --NGKYILAATLDNTLKLWDYSKGK 228
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 93
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 151
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 152 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 199
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 200 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 247 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 268
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 269 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P ++ IV+ + D VR + + G K L H
Sbjct: 120 KC-LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 174
Query: 154 HKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 175 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 224
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 225 --NGKYILAATLDNTLKLWDYSKGK 247
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 95
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 153
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 154 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 201
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 202 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 248
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 249 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 270
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 271 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P ++ IV+ + D VR + + G K L H
Sbjct: 122 KC-LKTLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 176
Query: 154 HKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 177 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 226
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 227 --NGKYILAATLDNTLKLWDYSKGK 249
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 71
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 129
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 130 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 177
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 178 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 225 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 246
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 98 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 152
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 153 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 202
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 203 --NGKYILAATLDNTLKLWDYSKGK 225
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 74/373 (19%)
Query: 42 RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
R SE + + L H V++V F+ +G+ L S S D+ + +W D K E+
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 64
Query: 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
SGH + + ++ D +++ A+D + + G L G H
Sbjct: 65 --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
P S ++ + D V+ +D++TG + + + ++ V+ N R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278
+ D R++D T GQ C LI D+ ++ + FS
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSP------- 205
Query: 279 YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338
N ++I T D L D++ T Y G
Sbjct: 206 -NGKYILAATLDNTLKL------------------WDYSKGKCLKT-----------YTG 235
Query: 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398
H+N NF +++VSGS+ ++IW + E+++ ++ VV HP
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 399 VLASSGIESDIKI 411
++AS+ +E+D I
Sbjct: 296 IIASAALENDKTI 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 101 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 155
Query: 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213
+ + + DGL + +D +G + IDD ++ V +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP----- 205
Query: 214 RNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 206 -NGKYILAATLDNTLKLWDYSKGK 228
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 104 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 158
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 159 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 208
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 209 --NGKYILAATLDNTLKLWDYSKGK 231
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 144/373 (38%), Gaps = 74/373 (19%)
Query: 42 RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
R SE + + L H V++V F+ +G+ L S S D+ + +W D K E+
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-- 64
Query: 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
SGH + + ++ D +++ A+D + + G L G H
Sbjct: 65 --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
P S ++ + D V+ +D++TG + + + ++ V+ N R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278
+ D R++D T GQ C LI D+ ++ + FS
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSP------- 205
Query: 279 YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338
N ++I T D L D++ T Y G
Sbjct: 206 -NGKYILAATLDNTLKL------------------WDYSKGKCLKT-----------YTG 235
Query: 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST 398
H+N NF +++VSGS+ ++IW + E+++ ++ VV HP
Sbjct: 236 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 399 VLASSGIESDIKI 411
++AS+ +E+D I
Sbjct: 296 IIASAALENDKTI 308
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 101 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 155
Query: 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213
+ + + DGL + +D +G + IDD ++ V +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP----- 205
Query: 214 RNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 206 -NGKYILAATLDNTLKLWDYSKGK 228
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 72
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 130
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 131 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 178
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 179 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 225
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 226 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 247
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 248 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 99 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 153
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 154 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 203
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 204 --NGKYILAATLDNTLKLWDYSKGK 226
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 104 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 158
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 159 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 208
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 209 --NGKYILAATLDNTLKLWDYSKGK 231
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 67
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 125
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 126 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 173
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 174 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 221 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 242
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 243 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 94 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 148
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 149 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 198
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 199 --NGKYILAATLDNTLKLWDYSKGK 221
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 71
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 129
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 130 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 177
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 178 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 225 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 246
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 98 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 152
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 153 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 202
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 203 --NGKYILAATLDNTLKLWDYSKGK 225
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 76
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 134
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 135 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 182
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 183 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 229
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 230 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 251
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 252 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 103 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 157
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 158 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 207
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 208 --NGKYILAATLDNTLKLWDYSKGK 230
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 77
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 135
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 136 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 183
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 184 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 231 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 252
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 253 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 104 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 158
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 159 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 208
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 209 --NGKYILAATLDNTLKLWDYSKGK 231
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 88
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 146
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 147 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 194
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 195 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 241
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 242 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 263
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 264 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 115 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 169
Query: 154 HKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 170 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 219
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 220 --NGKYILAATLDNTLKLWDYSKGK 242
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 76/359 (21%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLSFHSGHNDNVFQAKIM 113
L H V++V F+ +G+ L S S D+ + +W D K E+ SGH + +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI----SGHKLGISD---V 70
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
++ D +++ A+D + + G L G H P S ++ + D
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNFNPQS-NLIVSGSFDE 128
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
V+ +D++TG + + + ++ V+ N R+ +L + D R++D
Sbjct: 129 SVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSLIVSSSYDGLCRIWD- 176
Query: 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMG 292
T GQ C LI D+ ++ + FS + +L + D + L+ G
Sbjct: 177 --------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 223
Query: 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352
+ Y GH+N NF
Sbjct: 224 K--------------------------------------CLKTYTGHKNEKYCIFANFSV 245
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
+++VSGS+ ++IW + E+++ ++ VV HP ++AS+ +E+D I
Sbjct: 246 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 97 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 151
Query: 154 HKLAIE-PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212
+ GS + + DGL + +D +G + IDD ++ V +
Sbjct: 152 SAVHFNRDGS--LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP---- 201
Query: 213 PRNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 202 --NGKYILAATLDNTLKLWDYSKGK 224
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 143/374 (38%), Gaps = 76/374 (20%)
Query: 42 RASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---DWKTERVKLS 98
R SE + + L H V++V F+ +G+ L + S D+ + +W D K E+
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI-- 64
Query: 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158
SGH + + ++ D +++ A+D + + G L G H
Sbjct: 65 --SGHKLGISD---VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG-HSNYVFCCNF 118
Query: 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218
P S ++ + D V+ +D++TG + + + ++ V+ N R+ +L
Sbjct: 119 NPQS-NLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFN------RDGSL 166
Query: 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLV 277
+ D R++D T GQ C LI D+ ++ + FS + +L
Sbjct: 167 IVSSSYDGLCRIWD---------TASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILA 212
Query: 278 SYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337
+ D + L+ G + Y
Sbjct: 213 ATLDNTLKLWDYSKGK--------------------------------------CLKTYT 234
Query: 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHS 397
GH+N NF +++VSGS+ ++IW + E+++ ++ VV HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 398 TVLASSGIESDIKI 411
++AS+ +E+D I
Sbjct: 295 NIIASAALENDKTI 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 39 LRRRASEDLVLRLGIY-AKLDK----HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE 93
L +++ L+ G Y K +K H+ ++ V++++D ++L+S SDD+ + +WD +
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 94 RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153
+ L GH++ VF P IV+ + D VR + + G K L H
Sbjct: 101 KC-LKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPV 155
Query: 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213
+ + + DGL + +D +G + IDD ++ V +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPVSFVKFSP----- 205
Query: 214 RNANLFAVAGSDEYTRLYDIRKYK 237
N A D +L+D K K
Sbjct: 206 -NGKYILAATLDNTLKLWDYSKGK 228
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + ++ISGS D+ + +
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + ++ A L + +E
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
+G H + L P + + G+DG + ++L A ++T D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D ++LW+ ++ + + D VF
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFS 242
Query: 110 AKIMP 114
P
Sbjct: 243 LAFSP 247
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + ++ISGS D+ + +
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + ++ A L + +E
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
+G H + L P + + G+DG + ++L A ++T D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D ++LW+ ++ + + D VF
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFS 242
Query: 110 AKIMP 114
P
Sbjct: 243 LAFSP 247
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + ++ISGS D+ + +
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + ++ A L + +E
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
+G H + L P + + G+DG + ++L A ++T D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D ++LW+ ++ + + D VF
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFS 242
Query: 110 AKIMP 114
P
Sbjct: 243 LAFSP 247
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + ++ISGS D+ + +
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + ++ A L + +E
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
+G H + L P + + G+DG + ++L A ++T D+
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 239
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D ++LW+ ++ + + D VF
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFS 242
Query: 110 AKIMP 114
P
Sbjct: 243 LAFSP 247
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 15/172 (8%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + ++ISGS D+ + +
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + ++ A L + +E
Sbjct: 128 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196
+G H + L P + + G+DG + ++L A ++T D+
Sbjct: 186 FIG-HNSNINTLTASPDGT-LIASAGKDGEIMLWNL--AAKKAMYTLSAQDE 233
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D ++LW+ ++ + + D VF
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFS 236
Query: 110 AKIMP 114
P
Sbjct: 237 LAFSP 241
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
V T ++ G+ + G D +++ KT RV +L+ H+G+ F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
D IVT + D I G +T H G L++ P + +F + D +
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
+D+R G + FT D +NAI P N N FA D RL+D+R
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
Q + N+I GIT ++FS LL++ D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
V T ++ G+ + G D +++ KT RV +L+ H+G+ F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
D IVT + D I G +T H G L++ P + +F + D +
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
+D+R G + FT D +NAI P N N FA D RL+D+R
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
Q + N+I GIT ++FS LL++ D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
V T ++ G+ + G D +++ KT RV +L+ H+G+ F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
D IVT + D I G +T H G L++ P + +F + D +
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
+D+R G + FT D +NAI P N N FA D RL+D+R
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
Q + N+I GIT ++FS LL++ D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
V T ++ G+ + G D +++ KT RV +L+ H+G+ F D
Sbjct: 111 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 164
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
D IVT + D I G +T H G L++ P + +F + D +
Sbjct: 165 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 221
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
+D+R G + FT D +NAI P N N FA D RL+D+R
Sbjct: 222 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 268
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
Q + N+I GIT ++FS LL++ D+F
Sbjct: 269 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 303
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 91/226 (40%), Gaps = 39/226 (17%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTE----RV--KLSFHSGHNDNVFQAKIMPFTD 117
V T ++ G+ + G D +++ KT RV +L+ H+G+ F D
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY------LSCCRFLD 153
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
D IVT + D I G +T H G L++ P + +F + D +
Sbjct: 154 DNQIVTSSGDTTCALWDI--ETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKL 210
Query: 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237
+D+R G + FT D +NAI P N N FA D RL+D+R
Sbjct: 211 WDVREGMCRQTFTGHESD----------INAICFFP-NGNAFATGSDDATCRLFDLRA-- 257
Query: 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283
Q + N+I GIT ++FS LL++ D+F
Sbjct: 258 -------DQELMTYSHDNII----CGITSVSFSKSGRLLLAGYDDF 292
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 11/164 (6%)
Query: 57 LDKHRGCVNTVSFNTDGDI-LISGSDDRRVILWDWKT-ERVKL---SFHSGHNDNVFQAK 111
L H+G ++ + D + LI+GS D+ +LWD T +R+ + F SGH +V
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 112 IMPFTDDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170
I + I +C ++ +I R + H+G + + P F T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRA---VRTYHGHEGDINSVKFFPDGQR-FGTGS 268
Query: 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214
+DG + FD+RTG +++ P D N + +V A +I R
Sbjct: 269 DDGTCRLFDMRTGHQLQVYNREP-DRNDNELPIVTSVAFSISGR 311
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 21/187 (11%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWD----WKTERVKLSFHSGHNDNVFQAKI 112
L H G V ++ + + + ++S S D R+I+W+ KT +KL H V +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-----HCPWVMECAF 116
Query: 113 MPFTDDRSIVTCAADGQVR----HAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFY 167
P + +S+ D +Q G + +++L H+G A P
Sbjct: 117 AP--NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227
T D +D+ TG +F ++ +++I+ NAN+F D
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGH-----TADVLSLSINSLNANMFISGSCDTT 229
Query: 228 TRLYDIR 234
RL+D+R
Sbjct: 230 VRLWDLR 236
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 46 DLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER 94
++VL LG + H G ++ + ++DG L +GS D+ + +W + R
Sbjct: 331 EMVLNLGTLQ--NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%)
Query: 34 TRNFALRRRASEDLVLRLG------IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87
T + A AS D LRL Y + H+ V +V + +ISGS D+ + +
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 88 WDWKTERVKLSFHSGHNDNVFQAKIMP---FTDDRSIVTCAADGQVRHAQILERGGVETK 144
W K + L+ GHND V Q +++P DD + A + + A L + +E
Sbjct: 134 WTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192
+G H + L P + + G+DG + ++L A + +
Sbjct: 192 FIG-HNSNINTLTASPDGT-LIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQ 109
+ I A H +NT++ + DG ++ S D + LW+ ++ + + D VF
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEVFS 242
Query: 110 AKIMP 114
P
Sbjct: 243 LAFSP 247
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/356 (19%), Positives = 142/356 (39%), Gaps = 54/356 (15%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L HR V V F+ +++S S+D + +WD++T + + GH D+V I
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSV--QDISFDH 160
Query: 117 DDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175
+ + +C+AD ++ + + G E + + H ++I P H+ + D +
Sbjct: 161 SGKLLASCSADMTIK---LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTI 216
Query: 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235
+ ++++TG + FT R ++ +V N ++ L A +D+ R++ +
Sbjct: 217 KMWEVQTGYCVKTFT-----GHREWVRMVRPN------QDGTLIASCSNDQTVRVWVV-- 263
Query: 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295
A C L V + ++++ +S S E T+ G
Sbjct: 264 ------------ATKECKAELREHRHV-VECISWAPESSY--SSISEATGSETKKSG--- 305
Query: 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355
P P +R + +M T + GH N V+GV F
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTG------------MCLMTLVGHDNW--VRGV-LFHSGG 350
Query: 356 EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411
++++S +D + +W K ++ + A H V ++ H + + + ++ +K+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H+G V ++SF DG ++ISGS D+ +W + L HN +V+ AK++ F++++
Sbjct: 103 HQGNVCSLSFQ-DG-VVISGSWDKTAKVWKEGSLVYNLQ---AHNASVWDAKVVSFSENK 157
Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179
+T +AD ++ + + V G H LA+ F +C DGL++ D
Sbjct: 158 -FLTASADKTIK---LWQNDKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVD 211
Query: 180 LRTG 183
TG
Sbjct: 212 XHTG 215
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L H V+ V ++DG +SGS D + LWD T F GH +V +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFS--S 138
Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH----VFYTCGED 172
D+R IV+ + D ++ L GV K + + + ++ SP+ + +CG D
Sbjct: 139 DNRQIVSGSRDKTIKLWNTL---GV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194
Query: 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232
LV+ ++L C+ + + LN + + P + +L A G D L+D
Sbjct: 195 KLVKVWNLA--------NCKLKTNHIGHTGY--LNTVTVSP-DGSLCASGGKDGQAMLWD 243
Query: 233 IRKYKWDGSTDFGQPADYFC-PPN 255
+ + K + D G + C PN
Sbjct: 244 LNEGKHLYTLDGGDIINALCFSPN 267
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 23/204 (11%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L H V+ V ++DG +SGS D + LWD T F GH +V +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFS--S 115
Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH----VFYTCGED 172
D+R IV+ + D ++ L GV K + + + ++ SP+ + +CG D
Sbjct: 116 DNRQIVSGSRDKTIKLWNTL---GV-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 171
Query: 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232
LV+ ++L C+ + + LN + + P + +L A G D L+D
Sbjct: 172 KLVKVWNLA--------NCKLKTNHIGHTGY--LNTVTVSP-DGSLCASGGKDGQAMLWD 220
Query: 233 IRKYKWDGSTDFGQPADYFC-PPN 255
+ + K + D G + C PN
Sbjct: 221 LNEGKHLYTLDGGDIINALCFSPN 244
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 32/229 (13%)
Query: 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI 112
I+ +H+ V + F D LIS SDD + +W+W+ + K F GH + V ++
Sbjct: 1001 IFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD--KCIFLRGHQETVKDFRL 1058
Query: 113 MPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED 172
+ + +++ + DG V+ I+ G + K HQG I + T +
Sbjct: 1059 LK---NSRLLSWSFDGTVKVWNII--TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADK 1113
Query: 173 -GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231
+ FDL P+ + R + V +A ++D + L A + R++
Sbjct: 1114 TAKIWSFDLLL----------PLHELRGHNGCVRCSAFSVD---STLLATGDDNGEIRIW 1160
Query: 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSELLVS 278
++ G+ P + G G +T L FS ++L+S
Sbjct: 1161 NVSN---------GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLIS 1200
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 58 DKHRGCVNTVSFNTDGD--ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
D+H VN F +L +GS D + LWD + + + GH ++V + P
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSP- 759
Query: 116 TDDRSIVTCAADGQVR 131
DD+ + +C+ADG ++
Sbjct: 760 -DDKLLASCSADGTLK 774
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 309 ASEMGSDHTSAASPSTANT------DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362
+ ++ D T +S S T D+ + +GH CV F + +G
Sbjct: 1096 SCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSA---FSVDSTLLATGD 1152
Query: 363 DCGRIFIWKKKGGELIRV 380
D G I IW GEL+ +
Sbjct: 1153 DNGEIRIWNVSNGELLHL 1170
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H V F+ DG + S D+ + ++ +T KL H D V TDDR
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE-KLLEIKAHEDEVLCCAFS--TDDR 676
Query: 120 SIVTCAADGQVR 131
I TC+ D +V+
Sbjct: 677 FIATCSVDKKVK 688
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMP 114
KL H G ++ + FN +L+S SDD + +W + F+ GH+ ++ A
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSAS--- 296
Query: 115 FTDDRSIVTCAADGQVR 131
+ D +++C+ DG VR
Sbjct: 297 WVGDDKVISCSMDGSVR 313
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H+ V + F DG LIS S+D + +W+W+T F H + V +++ D
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLL---QDS 1063
Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHF 178
+++ + DG V+ ++ G +E HQG AI + T + + F
Sbjct: 1064 RLLSWSFDGTVKVWNVI-TGRIERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1121
Query: 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
DL + P+ + + + V +A ++D L A + R++++
Sbjct: 1122 DLLS----------PLHELKGHNGCVRCSAFSLD---GILLATGDDNGEIRIWNV 1163
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 58 DKHRGCVNTVSFNTDGD--ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
D+H VN F + +L +GS+D + LWD + + + GH ++V + P
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSP- 760
Query: 116 TDDRSIVTCAADGQVR 131
DD + +C+ADG +R
Sbjct: 761 -DDELLASCSADGTLR 775
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
+L H GCV +F+ DG +L +G D+ + +W+
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
V S++ DGD +I + ++ V+L+D T + H+GH+ + P+
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 83/206 (40%), Gaps = 26/206 (12%)
Query: 36 NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
NFA+ AS D LRL K H V +V+F+ D ++SG D + +W+
Sbjct: 80 NFAVS--ASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Query: 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149
K E + H D V + P D IV+ D V+ L G + T L G H
Sbjct: 138 VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK-VWDLATGRLVTDLKG-H 195
Query: 150 QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNA 208
+ + P + + +DG+ + +DL G A +E+ PI N
Sbjct: 196 TNYVTSVTVSPDGS-LCASSDKDGVARLWDLTKGEALSEMAAGAPI------------NQ 242
Query: 209 IAIDPRNANLFAVAGSDEYTRLYDIR 234
I P + A +++ R++D+
Sbjct: 243 ICFSPN--RYWMCAATEKGIRIFDLE 266
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 21/175 (12%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H+ V + F DG LIS S+D + +W+W+T F H + V +++ D
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG--DYVFLQAHQETVKDFRLL---QDS 1056
Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-GLVQHF 178
+++ + DG V+ ++ G +E HQG AI + T + + F
Sbjct: 1057 RLLSWSFDGTVKVWNVI-TGRIERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIWSF 1114
Query: 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
DL + P+ + + + V +A ++D L A + R++++
Sbjct: 1115 DLLS----------PLHELKGHNGCVRCSAFSLD---GILLATGDDNGEIRIWNV 1156
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 58 DKHRGCVNTVSFNTDGD--ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
D+H VN F + +L +GS+D + LWD + + + GH ++V + P
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSP- 753
Query: 116 TDDRSIVTCAADGQVR 131
DD + +C+ADG +R
Sbjct: 754 -DDELLASCSADGTLR 768
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89
+L H GCV +F+ DG +L +G D+ + +W+
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
V S++ DGD +I + ++ V+L+D T + H+GH+ + P+
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 110 AKIMPFTDDRSIVTC-----------AADGQVRHAQI--LERGGVETKLLGKHQGRAHKL 156
++I+ T DR + C A GQ I + +G + LL H+ ++
Sbjct: 227 SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEV 286
Query: 157 AIEPGSPHVFYTCGEDGLVQHFDLRT-----------GAATELFTCRPIDDRRNYMTVVN 205
P +P +TC EDG + H+D T G + F I ++ N V
Sbjct: 287 HFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVI 346
Query: 206 LNAIAIDP 213
+ ++ DP
Sbjct: 347 SSWLSTDP 354
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 18/139 (12%)
Query: 115 FTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA--HKLAIEPGSPHVFYTCGED 172
F I+T + GQ++ ++G +++L R H + P HV T G+D
Sbjct: 199 FLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQD 258
Query: 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232
G++ +D+R G M V L A + + +T D
Sbjct: 259 GMLSIWDVRQGT----------------MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED 302
Query: 233 IRKYKWDGSTDFGQPADYF 251
+ WD STD + + F
Sbjct: 303 GSLWHWDASTDVPEKSSLF 321
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLS-FHSGHNDNVFQAKIMPFTD 117
H V +V+F+ D ++S S DR + LW+ E + +S GH D V + P T
Sbjct: 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530
Query: 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177
+IV+ + D V+ L + + L G H G +A+ P + + G+DG+V
Sbjct: 531 QPTIVSASWDKTVKVWN-LSNCKLRSTLAG-HTGYVSTVAVSPDG-SLCASGGKDGVVLL 587
Query: 178 FDLRTG 183
+DL G
Sbjct: 588 WDLAEG 593
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+L H V V ++DG +SGS D + LWD V GH +V
Sbjct: 425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD-LAAGVSTRRFVGHTKDVLSVAFS-- 481
Query: 116 TDDRSIVTCAADGQVR 131
D+R IV+ + D ++
Sbjct: 482 LDNRQIVSASRDRTIK 497
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+L H G V + + G IL+SGS DR V +WD K F GHN V I+ +
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEY 214
Query: 116 TDDRSIVTCAADGQV 130
+ + IVT + D +
Sbjct: 215 KNIKYIVTGSRDNTL 229
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L H V TVS G+I++SGS D +I+WD + L SGH D ++ + I
Sbjct: 266 LRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKC-LYILSGHTDRIY-STIYDHE 321
Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
R I + + D +R LE G + L QG + + S + DG ++
Sbjct: 322 RKRCI-SASXDTTIRIWD-LENGELXYTL----QGHTALVGLLRLSDKFLVSAAADGSIR 375
Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236
+D + R+ NL+AI + N+ V+GS+ +Y++R
Sbjct: 376 GWDANDYS------------RKFSYHHTNLSAITTFYVSDNIL-VSGSENQFNIYNLRSG 422
Query: 237 K 237
K
Sbjct: 423 K 423
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115
+L H G V + + G IL+SGS DR V +WD K F GHN V I+ +
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEY 214
Query: 116 TDDRSIVTCAADGQV 130
+ + IVT + D +
Sbjct: 215 KNIKYIVTGSRDNTL 229
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 23/181 (12%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L H V TVS G+I++SGS D +I+WD + L SGH D ++ + I
Sbjct: 266 LRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHTDRIY-STIYDHE 321
Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
R I + + D +R LE G +L+ QG + + S + DG ++
Sbjct: 322 RKRCI-SASMDTTIRIWD-LENG----ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIR 375
Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236
+D + R+ NL+AI + N+ V+GS+ +Y++R
Sbjct: 376 GWDANDYS------------RKFSYHHTNLSAITTFYVSDNIL-VSGSENQFNIYNLRSG 422
Query: 237 K 237
K
Sbjct: 423 K 423
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSI 121
V V++ ++ IL++ SD V LW+ + L F +D++ + + F+D
Sbjct: 97 VTDVAWVSEKGILVA-SDSGAVELWEILEKESLLVNKFAKYEHDDIVKT-LSVFSDGTQA 154
Query: 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181
V+ D V+ + ++ + K H + +A PG +F +CGEDG + +D R
Sbjct: 155 VSGGKDFSVKVWDLSQKAVL--KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF 108
L + +AK + H V T+S +DG +SG D V +WD +++ L ++ H+ V
Sbjct: 128 LLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVWD-LSQKAVLKSYNAHSSEVN 185
Query: 109 QAKIMPFTDDRSIVTCAADGQV 130
P D ++C DG++
Sbjct: 186 CVAACP-GKDTIFLSCGEDGRI 206
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 43 ASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
+ED ++R+ I L H + ++ + GD L+SGS DR V +WD +T +
Sbjct: 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS 200
Query: 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131
L+ D V + P D + I + D VR
Sbjct: 201 LTL--SIEDGVTTVAVSP-GDGKYIAAGSLDRAVR 232
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD 72
A S+D+A V VW E G F + R SE+ H+ V +V F D
Sbjct: 223 AAGSLDRA-VRVWDSETG------FLVERLDSEN--------ESGTGHKDSVYSVVFTRD 267
Query: 73 GDILISGSDDRRVILWDWKTERVKLSFHS-----------GHNDNVFQAKIMPFTDDRSI 121
G ++SGS DR V LW+ + K + GH D F + +D I
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYI 325
Query: 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162
++ + D V ++ G +L H+ +A+ GS
Sbjct: 326 LSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISVAVANGS 364
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 78/182 (42%), Gaps = 28/182 (15%)
Query: 72 DGDILISGSDDRRVILWDWKT----ERVKLSFHS--GHNDNVFQAKIMPFT-DDRSIVTC 124
DG + +GS DR V +WD +T ER+ S GH D+V+ + FT D +S+V+
Sbjct: 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS---VVFTRDGQSVVSG 274
Query: 125 AADGQVR-----------HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173
+ D V+ ++ G E +G H+ +A ++ + G
Sbjct: 275 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRG 333
Query: 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233
++ +D ++G + R + ++V N ++ P N+FA D R++
Sbjct: 334 VL-FWDKKSGNPLLMLQGH----RNSVISVAVANGSSLGPE-YNVFATGSGDCKARIWKY 387
Query: 234 RK 235
+K
Sbjct: 388 KK 389
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 17/178 (9%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H ++ SF +++ S D LWD ++ ++ SFH GH +V + P
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGN 211
Query: 120 SIVTCAADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178
+ V+ D + A + + R G + H+ + + P S F + +D + +
Sbjct: 212 TFVSGGCD---KKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLY 267
Query: 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT-RLYDIRK 235
DLR +++ I A ++D + AG ++YT ++D+ K
Sbjct: 268 DLRADREVAIYSKESI----------IFGASSVDFSLSGRLLFAGYNDYTINVWDVLK 315
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
+ H VN+V + GD SGSDD L+D + +R +++ +S + +F A + F+
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR-EVAIYSKES-IIFGASSVDFS 293
Query: 117 -DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160
R + D + +L+ G +L H+ R L + P
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLK--GSRVSILFGHENRVSTLRVSP 336
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418
VSG + +W + G+ ++ E VN + +P AS ++ ++ AD
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR-AD 272
Query: 419 RATLPTNIEQVCFSIYSADY 438
R + E + F S D+
Sbjct: 273 REVAIYSKESIIFGASSVDF 292
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88
L++ + ++ D H G V +VS+N G IL S DD +V LW
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88
L++ + ++ D H G V +VS+N G IL S DD +V LW
Sbjct: 294 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88
L++ + ++ D H G V +VS+N G IL S DD +V LW
Sbjct: 292 LQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
AS+DL +++ Y A L+ H V+ F+ I+ISGS+D + +W+ T +V+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 97 LSFHSG 102
+ + G
Sbjct: 264 KTLNVG 269
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
S+D +R+ Y + H + +++ + ++SGSDD V LW+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH-K 155
GH V P D + + D V+ + + T G+ +G +
Sbjct: 133 EQTFEGHEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184
P P++ T +D ++ +D +T +
Sbjct: 192 YYPLPDKPYMI-TASDDLTIKIWDYQTKS 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 324 TANTDVRIAPQVYKGHRNCVTVKG----VNF--FGPKCEYVVSGSDCGRIFIWKKKGGEL 377
TA+ D+ I Y+ T++G V+F F P ++SGS+ G + IW ++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 378 IRVIEADRHVVNCIEPHP 395
+ + CI HP
Sbjct: 263 EKTLNVGLERSWCIATHP 280
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
AS+DL +++ Y A L+ H V+ F+ I+ISGS+D + +W+ T +V+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 97 LSFHSG 102
+ + G
Sbjct: 264 KTLNVG 269
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
S+D +R+ Y + H + +++ + ++SGSDD V LW+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH-K 155
GH V P D + + D V+ + + T G+ +G +
Sbjct: 133 EQTFEGHEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGA 184
P P++ T +D ++ +D +T +
Sbjct: 192 YYPLPDKPYMI-TASDDLTIKIWDYQTKS 219
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 324 TANTDVRIAPQVYKGHRNCVTVKG----VNF--FGPKCEYVVSGSDCGRIFIWKKKGGEL 377
TA+ D+ I Y+ T++G V+F F P ++SGS+ G + IW ++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 378 IRVIEADRHVVNCIEPHP 395
+ + CI HP
Sbjct: 263 EKTLNVGLERSWCIATHP 280
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 57 LDKHRGCVNTVSFNTD--GDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKIM 113
L H G V V + G IL S S D +V++W + R +++ H+ H+ +V +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPH---- 164
P ++ ++DG+V + E G ++ +G + IE H
Sbjct: 109 PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 165 ---VFYTCGEDGLVQHFDLRTGAATELF 189
F T G D LV+ + + A T +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVL 196
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
Query: 73 GDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131
G IL S S D +V++W + R +++ H+ H+ +V + P ++ ++DG+V
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 132 HAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPH-------VFYTCGEDGLVQHFD 179
+ E G ++ +G + IE H F T G D LV+ +
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 180 LRTGAAT 186
+ A T
Sbjct: 187 YNSDAQT 193
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKG---------VNFFG 352
P + R + S+ + T V + P + + +T KG +NFF
Sbjct: 192 PENIRGTYEGLASEQMISYLKDLGITTVELMPVFHFIDQRFLTDKGLTNYWGYDPINFFS 251
Query: 353 PKCEYVVSGSDCGRIFIWKKKGGEL 377
P+C Y +G G++ +KK EL
Sbjct: 252 PECRYSSTGCLGGQVLSFKKMVNEL 276
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 73 GDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131
G IL S S D +V++W + R +++ H+ H+ +V + P ++ ++DG+V
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 132 HAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPH-------VFYTCGEDGLVQHFD 179
+ E G ++ +G + IE H F T G D LV+ +
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
Query: 180 LRTGAATELF 189
+ A T +
Sbjct: 189 YNSDAQTYVL 198
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
AS+DL +++ Y A L+ H V+ F+ I+ISGS+D + +W+ T +V+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 97 LSFHSG 102
+ + G
Sbjct: 264 KTLNVG 269
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 324 TANTDVRIAPQVYKGHRNCVTVKG----VNF--FGPKCEYVVSGSDCGRIFIWKKKGGEL 377
TA+ D+ I Y+ T++G V+F F P ++SGS+ G + IW ++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 378 IRVIEADRHVVNCIEPHP 395
+ + CI HP
Sbjct: 263 EKTLNVGLERSWCIATHP 280
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
S+D +R+ Y + H + +++ + ++SGSDD V LW+W+
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH-K 155
GH V P D + + D V+ + + T G+ +G +
Sbjct: 133 EQTFEGHEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 156 LAIEPGSPHVFYTCGEDGLVQHFDLRT 182
P P++ T +D ++ +D +T
Sbjct: 192 YYPLPDKPYMI-TASDDLTIKIWDYQT 217
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 63/229 (27%)
Query: 53 IYAKLDKHRGCVNTVSFNTD----GDILISGSDDRRVILWDWKTERVKLSFH-SGHNDNV 107
++ + H + +V++ T+ + +++GS D V +W W+ ER+ L + GH V
Sbjct: 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGV 83
Query: 108 FQAKI---MPFTDDRSIVTCAADGQVR--------HAQILERGGVETKLL---------- 146
I +P S+ D +R + ++ G V+ L
Sbjct: 84 VSVDISHTLPIAASSSL-----DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138
Query: 147 -GKHQGRAHKLAIEPG------------------SPHVFYTCGE--DGLVQHFDLRTGAA 185
G H G+ + +E G SP Y DG++ FD+ TG
Sbjct: 139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL 198
Query: 186 TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
+ R ++ P ++ L A D Y ++YD++
Sbjct: 199 LHTLEGHAMPIR----------SLTFSP-DSQLLVTASDDGYIKIYDVQ 236
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTV--VN 205
H G + L IEP + G DG++ +DL + +TC+ + R++ V +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251
+ + P + +F + D+ +++D T+ Q AD F
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWD---------TNTLQTADVF 138
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 57 LDKHRGCVNTVSFNTD--GDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKIM 113
L H G V V + G IL S S D +V++W + R +++ H+ H+ +V +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPH---- 164
P ++ ++DG+V + E G ++ +G + IE H
Sbjct: 109 PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 165 ---VFYTCGEDGLVQHFDLRTGAATELF 189
F T G D LV+ + + A T +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVL 196
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 43 ASEDLVLRLGIY------AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96
AS+DL +++ Y A L+ H V+ F+ I+ISGS+D + +W+ T +V+
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263
Query: 97 LSFHSG 102
+ + G
Sbjct: 264 KTLNVG 269
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 324 TANTDVRIAPQVYKGHRNCVTVKG----VNF--FGPKCEYVVSGSDCGRIFIWKKKGGEL 377
TA+ D+ I Y+ T++G V+F F P ++SGS+ G + IW ++
Sbjct: 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 378 IRVIEADRHVVNCIEPHP 395
+ + CI HP
Sbjct: 263 EKTLNVGLERSWCIATHP 280
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 57 LDKHRGCVNTVSFNTD--GDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKIM 113
L H G V V + G IL S S D +V +W + R +++ H+ H+ +V +
Sbjct: 49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWA 108
Query: 114 PFTDDRSIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPH---- 164
P ++ ++DG+V + E G ++ +G + IE H
Sbjct: 109 PHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTK 168
Query: 165 ---VFYTCGEDGLVQHFDLRTGAATELF 189
F T G D LV+ + + A T +
Sbjct: 169 ESRKFVTGGADNLVKIWKYNSDAQTYVL 196
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD 118
+H V+TVS + G +SGS D + +WD ++V LS + H V P D
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWD-LAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 119 RSIVTCAADGQV 130
++C+ D ++
Sbjct: 184 V-FLSCSEDNRI 194
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 59/165 (35%), Gaps = 34/165 (20%)
Query: 39 LRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW---------- 88
L R +D V A L+ H V +++F+ G L S SDDR V +W
Sbjct: 176 LYREEEDDWV----CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 89 --------DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140
WK FHS ++ T ++ T D +R Q
Sbjct: 232 VACSGSDPSWKCICTLSGFHS---RTIYDIAWCQLTG--ALATACGDDAIRVFQEDPNSD 286
Query: 141 VE--TKLLGKHQGRAHK-----LAIEPGSPHVFYTCGEDGLVQHF 178
+ T L H +AH +A P P + +C +DG V +
Sbjct: 287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 70 NTDGDILISGSDDRRVILWDWKTERVKLSFH------SGHNDNVFQAKIMPFTDDRSIVT 123
N D +LISGS D+ V++W E F +GHN F + + ++ ++
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH--FVSDLALSQENCFAIS 93
Query: 124 CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171
+ D +R + R G K HQ + +A P + + E
Sbjct: 94 SSWDKTLRLWDL--RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT 116
L H V V + DG ++SG+ D V +WD +TE L GH + V+ +
Sbjct: 235 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF---- 287
Query: 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQ 176
D +V+ + D +R + E G L G HQ + ++ ++ + D V+
Sbjct: 288 DGIHVVSGSLDTSIRVWDV-ETGNCIHTLTG-HQSLTSGMELK---DNILVSGNADSTVK 342
Query: 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234
+D++TG L T + + ++ +T + N N + D +L+D++
Sbjct: 343 IWDIKTGQC--LQTLQGPNKHQSAVTCLQF--------NKNFVITSSDDGTVKLWDLK 390
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92
+KH+ V + FN + +I+ SDD V LWD KT
Sbjct: 359 NKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKT 391
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392
+G+ + VVSGS I +W + G +RV+E +V CI
Sbjct: 297 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374
D + A + TD+ + +V GHR V V V+F +Y+VS S I +W
Sbjct: 232 DRSIAVWDMASPTDITLR-RVLVGHRAAVNV--VDFDD---KYIVSASGDRTIKVWNTST 285
Query: 375 GELIRVIEADRHVVNCIEPHPHSTVLASS 403
E +R + + + C++ V SS
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRLVVSGSS 314
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 75 ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134
+++SGS D + LWD + L GH + V + + F D++ IV+ A DG+++
Sbjct: 308 LVVSGSSDNTIRLWDIECGAC-LRVLEGHEELV---RCIRF-DNKRIVSGAYDGKIKVWD 362
Query: 135 ILE-------RGGVETKLLGKHQGRAHKLAIE 159
++ G + + L +H GR +L +
Sbjct: 363 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD 394
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H G V ++++ DG + S S D+ + +W+ T +V+ + G Q I+ +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII--WTKQ 295
Query: 120 SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179
++V+ +A+G + E G ++ G ++ + G ++ +G + +D
Sbjct: 296 ALVSISANGFINFVN-PELGSIDQVRYGHNKAITALSSSADGK--TLFSADAEGHINSWD 352
Query: 180 LRTGAATELF 189
+ TG + +F
Sbjct: 353 ISTGISNRVF 362
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 53 IYAKLDKHRGCVNTVSFNTD--GDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQ 109
+ A L H G V V++ G+IL S S DR+VI+W + + S H+GH+ +V
Sbjct: 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNS 108
Query: 110 AKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLL 146
P D I+ C ++DG + G E K +
Sbjct: 109 VCWAPH-DYGLILACGSSDGAISLLTYTGEGQWEVKKI 145
>pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
Length = 224
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 91 KTERVKLSFHSGHNDNVFQAKIMPF-TDDRSIVTCAADGQVRHAQILERGGVETKLLGKH 149
+T ++ +FH + V ++ PF T+ I+ DGQ Q+LER
Sbjct: 63 RTMEIESTFHM-YVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLER---------VD 112
Query: 150 QGRAHKLAIEPGSPHVFYTCGE 171
+ A + ++P +F TCG+
Sbjct: 113 EWMAKEGLLDPNVKSIFVTCGD 134
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 107 VFQAKIMPFTDDRS---IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163
+ Q ++ TD+ ++ AA GQ+ + L + G + +LLGK + A LA G
Sbjct: 21 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 80
Query: 164 HV---FYTCGEDGLVQHFDLRTG 183
+ CG D V +D G
Sbjct: 81 DIVKMLLDCGVD--VNEYDWNGG 101
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR 119
H+ V+++ D +L +G DD+ + WDWKT + +F + + I P+ +D+
Sbjct: 240 HKHFVSSICCGKDYLLLSAGGDDK-IFAWDWKTGKNLSTFD-------YNSLIKPYLNDQ 291
Query: 120 SI 121
+
Sbjct: 292 HL 293
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 107 VFQAKIMPFTDDRS---IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163
+ Q ++ TD+ ++ AA GQ+ + L + G + +LLGK + A LA G
Sbjct: 39 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 98
Query: 164 HV---FYTCGEDGLVQHFDLRTG 183
+ CG D V +D G
Sbjct: 99 DIVKMLLDCGVD--VNEYDWNGG 119
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 107 VFQAKIMPFTDDRS---IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163
+ Q ++ TD+ ++ AA GQ+ + L + G + +LLGK + A LA G
Sbjct: 23 IEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT 82
Query: 164 HV---FYTCGEDGLVQHFDLRTG 183
+ CG D V +D G
Sbjct: 83 DIVKMLLDCGVD--VNEYDWNGG 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,301,050
Number of Sequences: 62578
Number of extensions: 606010
Number of successful extensions: 1753
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1340
Number of HSP's gapped (non-prelim): 376
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)