Query 012712
Match_columns 458
No_of_seqs 789 out of 1863
Neff 12.2
Searched_HMMs 46136
Date Fri Mar 29 05:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.1E-62 4.6E-67 389.4 29.2 332 52-454 106-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.4E-60 3.1E-65 379.0 29.8 321 3-413 120-479 (480)
3 KOG0318 WD40 repeat stress pro 100.0 2.3E-50 4.9E-55 333.8 41.7 420 4-455 65-559 (603)
4 KOG0272 U4/U6 small nuclear ri 100.0 9.6E-52 2.1E-56 332.8 23.5 290 53-413 167-458 (459)
5 KOG0319 WD40-repeat-containing 100.0 3.3E-50 7.1E-55 346.0 32.5 374 4-454 111-617 (775)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-50 6.7E-55 324.2 24.0 282 102-454 173-458 (459)
7 KOG0286 G-protein beta subunit 100.0 9.5E-48 2.1E-52 295.4 32.5 297 48-413 42-343 (343)
8 KOG0315 G-protein beta subunit 100.0 1.5E-47 3.3E-52 287.5 31.5 295 74-434 11-308 (311)
9 KOG0319 WD40-repeat-containing 100.0 1.8E-47 3.8E-52 329.2 33.2 414 2-455 66-576 (775)
10 KOG0318 WD40 repeat stress pro 100.0 2.1E-45 4.6E-50 304.4 38.7 379 1-455 193-601 (603)
11 KOG0306 WD40-repeat-containing 100.0 2.9E-46 6.4E-51 322.3 32.4 395 5-456 72-664 (888)
12 KOG0291 WD40-repeat-containing 100.0 8.3E-45 1.8E-49 313.6 38.7 408 3-456 101-550 (893)
13 KOG0315 G-protein beta subunit 100.0 4.6E-45 1E-49 274.2 30.0 297 10-394 10-309 (311)
14 KOG0279 G protein beta subunit 100.0 4.4E-44 9.5E-49 273.5 31.9 292 51-456 5-313 (315)
15 KOG0273 Beta-transducin family 100.0 4.1E-44 8.9E-49 292.9 32.5 326 57-456 174-523 (524)
16 KOG0291 WD40-repeat-containing 100.0 1.4E-42 3.1E-47 299.8 38.7 379 4-456 195-612 (893)
17 KOG0279 G protein beta subunit 100.0 4.9E-43 1.1E-47 267.7 30.6 286 9-373 27-313 (315)
18 KOG0286 G-protein beta subunit 100.0 4.4E-43 9.6E-48 269.7 30.1 290 98-454 49-343 (343)
19 KOG0265 U5 snRNP-specific prot 100.0 6E-43 1.3E-47 270.0 27.1 295 53-413 39-336 (338)
20 KOG0296 Angio-associated migra 100.0 1E-42 2.2E-47 275.8 29.0 339 53-455 56-397 (399)
21 KOG0295 WD40 repeat-containing 100.0 3.8E-43 8.2E-48 278.1 25.1 306 50-454 97-404 (406)
22 KOG0295 WD40 repeat-containing 100.0 3.9E-43 8.4E-48 278.0 24.6 291 4-414 114-405 (406)
23 KOG0645 WD40 repeat protein [G 100.0 1.6E-41 3.5E-46 258.3 31.3 295 51-456 4-311 (312)
24 KOG0282 mRNA splicing factor [ 100.0 7.1E-44 1.5E-48 292.5 19.3 295 52-413 205-503 (503)
25 KOG0296 Angio-associated migra 100.0 7E-42 1.5E-46 271.1 29.9 324 5-415 71-398 (399)
26 KOG0306 WD40-repeat-containing 100.0 2.1E-41 4.6E-46 292.4 34.9 400 12-454 35-620 (888)
27 KOG0293 WD40 repeat-containing 100.0 1.5E-42 3.2E-47 279.2 25.0 297 51-417 214-515 (519)
28 KOG0284 Polyadenylation factor 100.0 3.4E-43 7.4E-48 282.4 19.2 280 60-454 95-378 (464)
29 KOG0285 Pleiotropic regulator 100.0 7.9E-42 1.7E-46 270.1 25.1 293 50-416 140-440 (460)
30 KOG0284 Polyadenylation factor 100.0 8.4E-43 1.8E-47 280.1 17.4 280 1-415 99-380 (464)
31 KOG0273 Beta-transducin family 100.0 1.8E-40 3.9E-45 271.6 30.8 319 6-415 186-523 (524)
32 KOG0316 Conserved WD40 repeat- 100.0 2.3E-40 4.9E-45 247.0 27.4 284 54-413 10-297 (307)
33 KOG0263 Transcription initiati 100.0 3.7E-41 8.1E-46 293.1 23.5 278 55-457 372-650 (707)
34 KOG0275 Conserved WD40 repeat- 100.0 2.2E-41 4.7E-46 264.7 17.6 291 2-413 217-507 (508)
35 KOG0281 Beta-TrCP (transducin 100.0 7.3E-41 1.6E-45 263.9 18.1 274 59-457 195-478 (499)
36 KOG0266 WD40 repeat-containing 100.0 6.5E-39 1.4E-43 287.1 32.2 296 52-415 149-454 (456)
37 cd00200 WD40 WD40 domain, foun 100.0 2.3E-38 5.1E-43 273.0 34.6 286 55-413 3-289 (289)
38 KOG0265 U5 snRNP-specific prot 100.0 6.4E-39 1.4E-43 247.8 27.2 284 100-454 43-336 (338)
39 KOG0282 mRNA splicing factor [ 100.0 1.7E-40 3.7E-45 272.7 19.5 285 100-454 210-503 (503)
40 KOG0276 Vesicle coat complex C 100.0 9.7E-38 2.1E-42 264.5 35.7 417 2-456 17-490 (794)
41 PLN00181 protein SPA1-RELATED; 100.0 5.1E-38 1.1E-42 302.8 37.7 292 57-414 479-792 (793)
42 KOG0285 Pleiotropic regulator 100.0 3.4E-39 7.3E-44 255.3 23.6 285 2-373 155-439 (460)
43 KOG0263 Transcription initiati 100.0 4E-39 8.7E-44 280.5 25.5 257 3-291 383-650 (707)
44 KOG0645 WD40 repeat protein [G 100.0 9.8E-38 2.1E-42 237.8 29.8 282 4-373 20-311 (312)
45 KOG0278 Serine/threonine kinas 100.0 3.5E-39 7.6E-44 242.9 17.3 290 55-420 8-302 (334)
46 KOG0276 Vesicle coat complex C 100.0 8.1E-38 1.8E-42 265.0 27.4 287 52-410 4-294 (794)
47 KOG1539 WD repeat protein [Gen 100.0 6.4E-37 1.4E-41 267.9 33.1 387 11-454 173-646 (910)
48 cd00200 WD40 WD40 domain, foun 100.0 7E-37 1.5E-41 263.7 33.3 282 101-454 6-289 (289)
49 KOG1407 WD40 repeat protein [F 100.0 1.4E-37 3E-42 235.7 24.9 276 101-447 17-293 (313)
50 KOG0292 Vesicle coat complex C 100.0 2.3E-37 5.1E-42 272.3 28.7 305 56-417 4-323 (1202)
51 PLN00181 protein SPA1-RELATED; 100.0 1E-36 2.3E-41 293.7 36.2 305 82-456 457-793 (793)
52 KOG0281 Beta-TrCP (transducin 100.0 5.2E-39 1.1E-43 253.5 16.5 266 10-420 207-482 (499)
53 KOG1446 Histone H3 (Lys4) meth 100.0 5.1E-36 1.1E-40 234.0 31.9 298 51-417 4-305 (311)
54 KOG0266 WD40 repeat-containing 100.0 1.6E-36 3.4E-41 271.7 30.8 290 102-457 157-455 (456)
55 KOG0293 WD40 repeat-containing 100.0 2.4E-37 5.2E-42 249.3 22.1 286 99-454 219-511 (519)
56 KOG0292 Vesicle coat complex C 100.0 9.7E-36 2.1E-40 262.2 32.9 348 2-449 13-389 (1202)
57 KOG0643 Translation initiation 100.0 4.3E-37 9.3E-42 233.9 21.1 287 56-416 5-318 (327)
58 KOG0313 Microtubule binding pr 100.0 6.6E-36 1.4E-40 238.5 25.9 273 10-415 115-418 (423)
59 KOG1407 WD40 repeat protein [F 100.0 3.7E-35 8.1E-40 222.6 26.5 278 55-406 14-293 (313)
60 KOG0316 Conserved WD40 repeat- 100.0 1E-35 2.2E-40 222.3 22.7 273 3-371 22-297 (307)
61 KOG1408 WD40 repeat protein [F 100.0 7.5E-35 1.6E-39 251.0 31.0 383 9-456 269-713 (1080)
62 KOG0772 Uncharacterized conser 100.0 2.1E-35 4.6E-40 244.8 25.2 302 53-412 159-484 (641)
63 KOG0278 Serine/threonine kinas 100.0 1.2E-36 2.6E-41 229.3 15.3 275 7-378 26-302 (334)
64 KOG0313 Microtubule binding pr 100.0 7E-35 1.5E-39 232.6 24.9 306 59-456 103-418 (423)
65 KOG0283 WD40 repeat-containing 100.0 1.4E-35 3E-40 260.7 23.0 258 52-374 257-577 (712)
66 KOG1063 RNA polymerase II elon 100.0 3.6E-34 7.7E-39 245.8 30.6 404 8-455 157-647 (764)
67 KOG1334 WD40 repeat protein [G 100.0 1.6E-36 3.4E-41 249.8 15.4 352 36-419 117-470 (559)
68 KOG0643 Translation initiation 100.0 2.9E-34 6.2E-39 218.5 26.4 290 100-455 6-316 (327)
69 KOG1063 RNA polymerase II elon 100.0 6.1E-33 1.3E-37 238.2 36.9 403 2-455 195-698 (764)
70 KOG0310 Conserved WD40 repeat- 100.0 1.5E-34 3.2E-39 238.3 25.8 285 61-417 26-311 (487)
71 KOG0288 WD40 repeat protein Ti 100.0 4.7E-36 1E-40 241.9 16.5 289 53-413 167-459 (459)
72 KOG1408 WD40 repeat protein [F 100.0 2.1E-34 4.6E-39 248.3 27.2 404 3-452 83-575 (1080)
73 KOG0275 Conserved WD40 repeat- 100.0 1.4E-35 3E-40 232.3 17.5 286 59-454 211-507 (508)
74 KOG0268 Sof1-like rRNA process 100.0 1.5E-35 3.3E-40 235.0 15.9 289 52-418 57-348 (433)
75 KOG0277 Peroxisomal targeting 100.0 6.1E-34 1.3E-38 215.2 23.6 282 65-454 12-307 (311)
76 KOG0640 mRNA cleavage stimulat 100.0 3.2E-34 6.9E-39 223.1 21.5 299 55-414 106-425 (430)
77 KOG1539 WD repeat protein [Gen 100.0 2.5E-32 5.3E-37 239.4 35.7 401 8-456 122-606 (910)
78 KOG0277 Peroxisomal targeting 100.0 9E-34 1.9E-38 214.3 22.9 284 3-372 13-308 (311)
79 KOG2106 Uncharacterized conser 100.0 1.7E-32 3.7E-37 227.1 32.3 355 6-455 208-625 (626)
80 KOG0647 mRNA export protein (c 100.0 3.3E-33 7.3E-38 216.5 24.8 276 59-403 25-311 (347)
81 KOG0640 mRNA cleavage stimulat 100.0 2.1E-33 4.6E-38 218.5 23.0 294 99-455 107-425 (430)
82 KOG0274 Cdc4 and related F-box 100.0 8E-33 1.7E-37 246.5 27.4 271 9-421 217-488 (537)
83 KOG2048 WD40 repeat protein [G 100.0 6.6E-31 1.4E-35 225.4 37.8 404 3-455 30-547 (691)
84 KOG0268 Sof1-like rRNA process 100.0 8.2E-34 1.8E-38 225.3 17.4 271 11-379 80-351 (433)
85 KOG1036 Mitotic spindle checkp 100.0 3.7E-32 7.9E-37 211.5 26.0 275 60-405 12-294 (323)
86 KOG0289 mRNA splicing factor [ 100.0 5.3E-32 1.1E-36 220.0 26.9 283 62-414 220-505 (506)
87 KOG0973 Histone transcription 100.0 2.1E-32 4.5E-37 247.2 27.3 293 60-457 12-356 (942)
88 KOG0305 Anaphase promoting com 100.0 6.9E-32 1.5E-36 231.3 29.0 271 10-375 188-463 (484)
89 KOG0283 WD40 repeat-containing 100.0 5.6E-33 1.2E-37 244.5 22.8 263 5-291 274-577 (712)
90 PTZ00421 coronin; Provisional 100.0 2.3E-31 5.1E-36 237.0 32.6 275 4-397 26-315 (493)
91 KOG0310 Conserved WD40 repeat- 100.0 3.4E-32 7.3E-37 224.5 24.8 278 1-373 29-309 (487)
92 KOG2106 Uncharacterized conser 100.0 9.9E-31 2.1E-35 216.7 33.5 363 5-454 111-519 (626)
93 KOG0294 WD40 repeat-containing 100.0 3.4E-31 7.4E-36 206.6 28.7 297 12-393 3-305 (362)
94 KOG1446 Histone H3 (Lys4) meth 100.0 8.2E-31 1.8E-35 205.1 30.2 282 101-454 11-301 (311)
95 KOG0300 WD40 repeat-containing 100.0 2.9E-32 6.3E-37 213.1 21.9 308 38-417 125-478 (481)
96 KOG0973 Histone transcription 100.0 1.7E-32 3.6E-37 247.8 23.5 313 4-419 19-359 (942)
97 KOG0288 WD40 repeat protein Ti 100.0 2.4E-33 5.3E-38 226.3 15.3 279 2-370 179-458 (459)
98 KOG0289 mRNA splicing factor [ 100.0 2.4E-31 5.2E-36 216.2 26.3 276 8-372 229-505 (506)
99 KOG0305 Anaphase promoting com 100.0 2E-31 4.4E-36 228.4 27.3 275 66-417 182-463 (484)
100 KOG0299 U3 snoRNP-associated p 100.0 2.8E-31 6.1E-36 217.4 23.7 306 3-371 147-454 (479)
101 KOG0274 Cdc4 and related F-box 100.0 4.5E-31 9.7E-36 235.3 26.7 273 60-456 207-482 (537)
102 KOG1310 WD40 repeat protein [G 100.0 2.9E-31 6.3E-36 222.3 23.7 254 43-297 32-310 (758)
103 KOG0294 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 203.8 25.2 265 76-417 4-283 (362)
104 KOG0641 WD40 repeat protein [G 100.0 3.1E-29 6.7E-34 186.8 31.8 298 50-455 22-348 (350)
105 KOG0772 Uncharacterized conser 100.0 2.5E-31 5.3E-36 220.8 21.9 303 101-453 164-484 (641)
106 KOG0308 Conserved WD40 repeat- 100.0 2.2E-31 4.7E-36 227.2 22.0 336 59-457 19-394 (735)
107 KOG1332 Vesicle coat complex C 100.0 3.9E-31 8.4E-36 199.0 20.4 253 1-291 14-287 (299)
108 KOG0647 mRNA export protein (c 100.0 3.9E-30 8.5E-35 199.6 25.5 273 101-444 24-311 (347)
109 KOG0299 U3 snoRNP-associated p 100.0 3.6E-30 7.9E-35 210.9 26.1 296 54-412 135-453 (479)
110 PTZ00420 coronin; Provisional 100.0 2.3E-29 5E-34 225.2 32.7 251 79-398 50-319 (568)
111 PTZ00421 coronin; Provisional 100.0 1.4E-29 3.1E-34 225.7 29.6 271 60-438 19-315 (493)
112 KOG0639 Transducin-like enhanc 100.0 1.4E-30 3E-35 215.9 21.1 290 53-457 412-705 (705)
113 KOG0264 Nucleosome remodeling 100.0 7.4E-30 1.6E-34 209.1 24.9 259 50-416 114-405 (422)
114 KOG0641 WD40 repeat protein [G 100.0 2.6E-28 5.6E-33 181.9 30.9 301 1-415 35-349 (350)
115 KOG1332 Vesicle coat complex C 100.0 2.2E-30 4.7E-35 194.9 19.3 269 97-455 4-285 (299)
116 KOG0301 Phospholipase A2-activ 100.0 2E-29 4.3E-34 216.9 27.1 283 51-415 4-288 (745)
117 KOG2096 WD40 repeat protein [G 100.0 2.6E-29 5.7E-34 196.6 25.3 306 54-415 79-402 (420)
118 KOG0308 Conserved WD40 repeat- 100.0 2.3E-30 4.9E-35 221.1 20.4 240 8-292 35-287 (735)
119 PTZ00420 coronin; Provisional 100.0 7.8E-29 1.7E-33 221.8 30.6 215 53-292 66-295 (568)
120 KOG1036 Mitotic spindle checkp 100.0 1.2E-28 2.6E-33 192.1 27.3 269 101-445 10-293 (323)
121 KOG2055 WD40 repeat protein [G 100.0 2E-29 4.4E-34 206.7 23.9 288 103-456 212-512 (514)
122 KOG0300 WD40 repeat-containing 100.0 2.1E-29 4.7E-34 197.1 22.0 277 9-375 159-478 (481)
123 KOG2096 WD40 repeat protein [G 100.0 1.3E-28 2.8E-33 192.7 26.2 316 85-454 63-400 (420)
124 KOG0301 Phospholipase A2-activ 100.0 5.7E-29 1.2E-33 214.1 26.4 276 99-454 9-286 (745)
125 KOG2048 WD40 repeat protein [G 100.0 3.6E-27 7.9E-32 202.6 36.1 372 54-455 18-504 (691)
126 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2E-27 4.3E-32 206.0 34.6 292 11-395 2-300 (300)
127 KOG4283 Transcription-coupled 100.0 2.4E-28 5.2E-33 189.2 25.0 308 57-415 39-365 (397)
128 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.3E-27 2.8E-32 207.2 32.6 294 73-436 1-300 (300)
129 KOG0639 Transducin-like enhanc 100.0 2.6E-29 5.7E-34 208.4 19.5 274 5-372 426-703 (705)
130 KOG2055 WD40 repeat protein [G 100.0 3.1E-28 6.7E-33 199.8 25.2 290 61-415 213-512 (514)
131 KOG0264 Nucleosome remodeling 100.0 1E-28 2.2E-33 202.4 22.0 263 7-291 134-405 (422)
132 KOG0321 WD40 repeat-containing 100.0 2.5E-28 5.4E-33 208.2 25.0 307 66-417 54-393 (720)
133 KOG1273 WD40 repeat protein [G 100.0 3.8E-28 8.3E-33 189.8 23.6 295 64-416 26-323 (405)
134 KOG0646 WD40 repeat protein [G 100.0 2.3E-28 4.9E-33 200.9 21.5 260 61-414 81-349 (476)
135 KOG1274 WD40 repeat protein [G 100.0 2.3E-27 4.9E-32 210.8 29.4 286 58-412 10-297 (933)
136 KOG0650 WD40 repeat nucleolar 100.0 5.8E-28 1.3E-32 204.5 24.5 315 52-453 391-732 (733)
137 KOG1445 Tumor-specific antigen 100.0 4.1E-27 8.9E-32 201.1 27.2 113 341-454 626-748 (1012)
138 KOG1274 WD40 repeat protein [G 100.0 1.2E-26 2.5E-31 206.4 29.0 284 101-453 10-297 (933)
139 KOG0269 WD40 repeat-containing 100.0 9.6E-28 2.1E-32 209.2 21.1 290 62-417 40-342 (839)
140 KOG0646 WD40 repeat protein [G 100.0 7.9E-27 1.7E-31 191.9 24.4 296 78-438 12-331 (476)
141 KOG1538 Uncharacterized conser 100.0 4.8E-26 1.1E-30 195.8 30.1 273 1-372 15-292 (1081)
142 KOG0269 WD40 repeat-containing 100.0 1E-27 2.2E-32 209.0 17.9 239 3-286 93-336 (839)
143 KOG2919 Guanine nucleotide-bin 100.0 3.3E-26 7.1E-31 179.7 23.3 287 62-406 50-361 (406)
144 KOG4283 Transcription-coupled 100.0 9.5E-26 2.1E-30 174.9 25.1 302 9-372 55-364 (397)
145 KOG1273 WD40 repeat protein [G 100.0 3.9E-26 8.4E-31 178.7 23.0 289 4-373 29-322 (405)
146 KOG1963 WD40 repeat protein [G 100.0 1E-24 2.2E-29 193.6 34.4 381 4-457 22-539 (792)
147 KOG4328 WD40 protein [Function 100.0 6E-26 1.3E-30 186.3 24.7 305 52-415 177-495 (498)
148 KOG1034 Transcriptional repres 100.0 2.8E-26 6.1E-31 180.4 20.7 325 51-414 27-382 (385)
149 KOG4227 WD40 repeat protein [G 100.0 5.6E-26 1.2E-30 183.2 22.9 305 54-415 49-387 (609)
150 KOG0321 WD40 repeat-containing 100.0 7.5E-26 1.6E-30 193.3 24.4 297 8-375 62-393 (720)
151 KOG1009 Chromatin assembly com 100.0 7E-26 1.5E-30 183.1 22.7 313 11-420 27-377 (434)
152 KOG2445 Nuclear pore complex c 100.0 2.9E-25 6.2E-30 173.2 25.2 272 97-415 6-318 (361)
153 KOG4328 WD40 protein [Function 99.9 2.6E-25 5.6E-30 182.6 23.7 293 101-454 183-493 (498)
154 KOG0267 Microtubule severing p 99.9 1.9E-27 4.2E-32 205.8 11.7 237 57-407 24-260 (825)
155 KOG2445 Nuclear pore complex c 99.9 1.1E-24 2.3E-29 170.1 25.8 292 58-382 10-330 (361)
156 KOG0267 Microtubule severing p 99.9 3.5E-27 7.5E-32 204.2 11.9 255 118-448 4-260 (825)
157 KOG1188 WD40 repeat protein [G 99.9 3.6E-25 7.9E-30 175.1 20.6 290 11-372 41-345 (376)
158 KOG1445 Tumor-specific antigen 99.9 3E-24 6.6E-29 183.8 27.6 188 222-454 599-796 (1012)
159 KOG0302 Ribosome Assembly prot 99.9 2.6E-25 5.6E-30 178.2 19.7 262 9-288 164-436 (440)
160 KOG0270 WD40 repeat-containing 99.9 1.7E-24 3.7E-29 177.2 23.1 282 66-456 130-449 (463)
161 KOG1188 WD40 repeat protein [G 99.9 1.1E-24 2.3E-29 172.5 20.9 290 74-415 41-346 (376)
162 KOG0307 Vesicle coat complex C 99.9 1E-25 2.2E-30 205.3 17.3 290 66-418 11-330 (1049)
163 KOG0270 WD40 repeat-containing 99.9 9.9E-25 2.1E-29 178.6 20.2 254 9-292 191-451 (463)
164 COG2319 FOG: WD40 repeat [Gene 99.9 5.3E-22 1.1E-26 182.2 40.7 358 4-456 71-442 (466)
165 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-24 1.2E-28 176.8 23.5 288 19-397 11-305 (673)
166 KOG0302 Ribosome Assembly prot 99.9 1.4E-24 3.1E-29 174.0 19.3 265 55-365 145-431 (440)
167 KOG0322 G-protein beta subunit 99.9 2.2E-24 4.8E-29 164.6 19.2 303 54-414 7-322 (323)
168 KOG0650 WD40 repeat nucleolar 99.9 2.4E-24 5.3E-29 182.8 20.7 304 3-413 405-733 (733)
169 KOG1034 Transcriptional repres 99.9 1.8E-23 4E-28 164.7 22.1 323 98-458 32-385 (385)
170 KOG4378 Nuclear protein COP1 [ 99.9 1.2E-23 2.5E-28 174.8 18.9 215 10-273 91-305 (673)
171 KOG1538 Uncharacterized conser 99.9 2.5E-23 5.3E-28 179.3 21.5 275 63-416 14-294 (1081)
172 KOG1009 Chromatin assembly com 99.9 6.7E-23 1.5E-27 166.1 21.3 299 61-452 13-368 (434)
173 KOG1963 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 175.8 28.4 384 5-456 167-583 (792)
174 KOG0322 G-protein beta subunit 99.9 4.1E-23 8.9E-28 157.8 16.9 301 101-455 11-322 (323)
175 KOG0307 Vesicle coat complex C 99.9 8.4E-24 1.8E-28 193.0 15.6 251 61-376 64-330 (1049)
176 KOG4497 Uncharacterized conser 99.9 4.1E-23 9E-28 162.9 17.4 302 66-454 13-389 (447)
177 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-23 2.8E-28 177.3 14.5 306 11-420 243-566 (577)
178 KOG4497 Uncharacterized conser 99.9 4E-22 8.7E-27 157.4 21.3 373 4-448 14-424 (447)
179 COG2319 FOG: WD40 repeat [Gene 99.9 7.9E-20 1.7E-24 167.8 39.2 330 56-456 60-400 (466)
180 KOG1007 WD repeat protein TSSC 99.9 1.7E-21 3.8E-26 151.0 23.1 275 127-452 39-357 (370)
181 KOG0644 Uncharacterized conser 99.9 3.3E-23 7.1E-28 182.7 10.7 291 48-417 177-470 (1113)
182 PRK11028 6-phosphogluconolacto 99.9 8.8E-20 1.9E-24 159.1 32.2 278 121-455 5-303 (330)
183 KOG0642 Cell-cycle nuclear pro 99.9 4.9E-22 1.1E-26 167.9 16.9 256 2-292 298-563 (577)
184 PRK11028 6-phosphogluconolacto 99.9 1.5E-19 3.2E-24 157.6 32.5 282 77-415 6-304 (330)
185 KOG1007 WD repeat protein TSSC 99.9 1.4E-20 3E-25 146.0 22.5 280 55-372 57-360 (370)
186 KOG0290 Conserved WD40 repeat- 99.9 2.5E-20 5.4E-25 144.8 23.7 209 59-292 94-320 (364)
187 KOG2919 Guanine nucleotide-bin 99.9 2.6E-20 5.6E-25 146.9 23.7 285 3-364 54-361 (406)
188 KOG4227 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 153.0 21.7 293 101-454 53-385 (609)
189 KOG1587 Cytoplasmic dynein int 99.9 2.6E-20 5.6E-25 165.4 26.2 286 83-417 222-518 (555)
190 KOG1517 Guanine nucleotide bin 99.9 1.7E-20 3.7E-25 170.1 24.5 297 61-418 1064-1384(1387)
191 KOG0649 WD40 repeat protein [G 99.9 9E-20 1.9E-24 138.1 23.6 283 62-454 11-314 (325)
192 KOG0649 WD40 repeat protein [G 99.9 1.2E-19 2.6E-24 137.4 24.1 246 5-291 17-275 (325)
193 PF02239 Cytochrom_D1: Cytochr 99.9 2.2E-19 4.8E-24 155.4 28.5 330 13-421 9-353 (369)
194 KOG0290 Conserved WD40 repeat- 99.9 9.2E-20 2E-24 141.7 22.0 291 52-411 36-361 (364)
195 KOG0303 Actin-binding protein 99.9 9.6E-21 2.1E-25 153.2 16.7 210 101-376 78-297 (472)
196 KOG1524 WD40 repeat-containing 99.9 1.1E-19 2.4E-24 153.0 21.6 268 102-455 12-285 (737)
197 KOG1240 Protein kinase contain 99.9 1.8E-19 3.9E-24 165.9 24.8 354 52-454 1039-1431(1431)
198 KOG2110 Uncharacterized conser 99.9 6.6E-18 1.4E-22 135.9 30.3 290 61-425 5-343 (391)
199 KOG0644 Uncharacterized conser 99.9 4.1E-21 9E-26 169.7 13.0 277 101-454 187-466 (1113)
200 KOG2110 Uncharacterized conser 99.9 9.2E-18 2E-22 135.1 30.3 237 104-416 5-249 (391)
201 KOG0771 Prolactin regulatory e 99.8 8.4E-19 1.8E-23 143.5 23.1 195 207-456 148-354 (398)
202 KOG1517 Guanine nucleotide bin 99.8 6.5E-19 1.4E-23 160.0 24.4 296 4-375 1070-1383(1387)
203 PF02239 Cytochrom_D1: Cytochr 99.8 6.5E-18 1.4E-22 146.3 29.0 326 77-454 10-345 (369)
204 PRK01742 tolB translocation pr 99.8 5.1E-19 1.1E-23 158.8 22.2 237 82-396 183-426 (429)
205 KOG0303 Actin-binding protein 99.8 5.2E-19 1.1E-23 143.3 19.1 206 2-237 86-297 (472)
206 KOG1587 Cytoplasmic dynein int 99.8 2.6E-18 5.6E-23 152.8 25.4 285 128-456 222-516 (555)
207 KOG1523 Actin-related protein 99.8 6.6E-18 1.4E-22 133.3 24.6 225 57-292 6-238 (361)
208 KOG1524 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 147.2 19.1 208 74-370 76-283 (737)
209 KOG1310 WD40 repeat protein [G 99.8 3.9E-18 8.5E-23 144.2 22.4 172 100-291 46-232 (758)
210 KOG1240 Protein kinase contain 99.8 2E-17 4.3E-22 152.8 27.4 269 2-295 1053-1339(1431)
211 KOG1354 Serine/threonine prote 99.8 7.5E-18 1.6E-22 134.3 21.5 351 61-453 25-431 (433)
212 KOG1334 WD40 repeat protein [G 99.8 5.4E-19 1.2E-23 147.1 15.6 306 100-454 138-464 (559)
213 KOG2321 WD40 repeat protein [G 99.8 4.6E-18 9.9E-23 144.6 21.0 329 20-415 7-343 (703)
214 KOG2315 Predicted translation 99.8 2.6E-17 5.7E-22 139.7 25.5 334 3-437 39-411 (566)
215 PRK01742 tolB translocation pr 99.8 2.8E-18 6E-23 154.1 20.5 233 127-437 183-426 (429)
216 KOG3881 Uncharacterized conser 99.8 1.1E-17 2.5E-22 135.5 20.8 277 60-438 54-343 (412)
217 KOG1523 Actin-related protein 99.8 1.8E-17 3.8E-22 130.9 21.0 248 103-396 9-260 (361)
218 KOG0771 Prolactin regulatory e 99.8 1.1E-18 2.3E-23 142.9 14.4 199 3-236 149-356 (398)
219 KOG2394 WD40 protein DMR-N9 [G 99.8 4.9E-18 1.1E-22 143.2 17.3 196 216-435 185-383 (636)
220 KOG2139 WD40 repeat protein [G 99.8 1.8E-16 4E-21 127.3 24.6 198 62-290 99-309 (445)
221 PRK03629 tolB translocation pr 99.8 1.6E-16 3.5E-21 142.3 25.4 235 128-437 179-428 (429)
222 PRK04922 tolB translocation pr 99.8 9.4E-17 2E-21 144.6 22.9 234 83-395 184-432 (433)
223 PRK03629 tolB translocation pr 99.8 3.6E-16 7.8E-21 140.0 25.9 235 83-396 179-428 (429)
224 KOG2111 Uncharacterized conser 99.8 1E-14 2.2E-19 115.4 28.5 240 106-417 7-258 (346)
225 KOG2139 WD40 repeat protein [G 99.8 1.6E-15 3.4E-20 122.1 24.0 238 4-282 104-366 (445)
226 KOG2315 Predicted translation 99.8 4.3E-14 9.4E-19 120.5 33.6 317 61-456 34-390 (566)
227 KOG2111 Uncharacterized conser 99.8 8.8E-15 1.9E-19 115.8 27.4 237 64-374 8-257 (346)
228 KOG1272 WD40-repeat-containing 99.7 1.5E-17 3.2E-22 137.8 11.5 226 5-289 136-361 (545)
229 PRK04922 tolB translocation pr 99.7 3.9E-16 8.4E-21 140.6 21.5 234 128-436 184-432 (433)
230 PRK05137 tolB translocation pr 99.7 1.4E-15 3E-20 137.3 24.9 235 128-437 182-433 (435)
231 PRK02889 tolB translocation pr 99.7 1.1E-15 2.3E-20 137.3 22.8 238 128-437 176-425 (427)
232 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.3E-20 129.3 20.4 253 117-420 134-457 (636)
233 PRK05137 tolB translocation pr 99.7 6.7E-15 1.5E-19 132.9 25.7 235 82-396 181-433 (435)
234 PRK02889 tolB translocation pr 99.7 4.4E-15 9.4E-20 133.3 24.2 235 83-396 176-425 (427)
235 KOG1409 Uncharacterized conser 99.7 1.9E-15 4.1E-20 120.8 18.8 253 50-372 13-269 (404)
236 COG5354 Uncharacterized protei 99.7 7E-14 1.5E-18 117.9 27.9 323 57-456 28-395 (561)
237 COG5354 Uncharacterized protei 99.7 5.8E-14 1.3E-18 118.3 27.4 336 3-448 37-421 (561)
238 PF10282 Lactonase: Lactonase, 99.7 1.3E-13 2.8E-18 120.3 31.0 292 83-421 13-330 (345)
239 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-15 5.1E-20 118.5 17.5 108 344-456 61-179 (194)
240 KOG2321 WD40 repeat protein [G 99.7 1.9E-14 4.2E-19 122.9 22.8 280 5-374 58-344 (703)
241 PF10282 Lactonase: Lactonase, 99.7 1.4E-12 3E-17 113.9 34.3 279 62-393 37-345 (345)
242 KOG1272 WD40-repeat-containing 99.7 1E-16 2.2E-21 133.0 7.1 191 205-455 131-322 (545)
243 COG4946 Uncharacterized protei 99.7 6.1E-13 1.3E-17 111.4 28.8 223 159-443 275-505 (668)
244 KOG0974 WD-repeat protein WDR6 99.6 6.8E-13 1.5E-17 121.5 29.6 148 6-182 141-289 (967)
245 KOG0974 WD-repeat protein WDR6 99.6 1.2E-14 2.6E-19 132.7 18.0 278 60-457 6-289 (967)
246 KOG3881 Uncharacterized conser 99.6 7.3E-14 1.6E-18 113.8 20.4 252 103-456 54-320 (412)
247 PF08662 eIF2A: Eukaryotic tra 99.6 3.2E-14 7E-19 112.0 17.9 113 261-419 59-183 (194)
248 KOG1354 Serine/threonine prote 99.6 3.4E-14 7.4E-19 113.8 17.2 260 4-292 31-361 (433)
249 PRK00178 tolB translocation pr 99.6 1.9E-13 4.1E-18 123.9 24.6 235 129-437 180-428 (430)
250 KOG2314 Translation initiation 99.6 7E-13 1.5E-17 113.1 25.7 317 4-418 216-576 (698)
251 KOG2314 Translation initiation 99.6 8.7E-13 1.9E-17 112.6 26.1 306 64-447 213-558 (698)
252 PRK04792 tolB translocation pr 99.6 1.8E-13 3.9E-18 123.3 23.6 233 129-437 199-447 (448)
253 TIGR02800 propeller_TolB tol-p 99.6 1.9E-13 4.1E-18 123.9 23.7 232 129-434 171-416 (417)
254 PRK01029 tolB translocation pr 99.6 3.2E-13 6.9E-18 120.6 24.6 244 128-438 165-426 (428)
255 TIGR02800 propeller_TolB tol-p 99.6 4E-13 8.7E-18 121.8 24.5 233 82-393 169-416 (417)
256 TIGR02658 TTQ_MADH_Hv methylam 99.6 2.7E-11 5.7E-16 102.8 32.7 273 83-423 27-338 (352)
257 PRK04792 tolB translocation pr 99.6 5.1E-13 1.1E-17 120.4 24.0 236 83-396 198-447 (448)
258 KOG0280 Uncharacterized conser 99.6 1E-12 2.2E-17 103.2 22.1 206 61-292 69-286 (339)
259 KOG1409 Uncharacterized conser 99.6 3.1E-13 6.7E-18 108.4 19.1 246 99-415 19-270 (404)
260 COG2706 3-carboxymuconate cycl 99.6 7.6E-11 1.6E-15 96.1 32.6 292 82-420 15-328 (346)
261 COG2706 3-carboxymuconate cycl 99.6 5.6E-11 1.2E-15 96.8 31.4 281 59-394 37-345 (346)
262 KOG1912 WD40 repeat protein [G 99.6 5.6E-12 1.2E-16 112.1 27.6 402 12-455 28-550 (1062)
263 PRK00178 tolB translocation pr 99.6 9.9E-13 2.1E-17 119.2 24.1 235 84-396 180-428 (430)
264 PRK01029 tolB translocation pr 99.6 1.2E-12 2.7E-17 116.9 22.7 218 173-455 165-402 (428)
265 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.1E-10 2.3E-15 99.2 32.9 292 9-382 11-339 (352)
266 TIGR03300 assembly_YfgL outer 99.6 1.3E-11 2.8E-16 110.0 29.0 309 73-453 65-376 (377)
267 KOG2041 WD40 repeat protein [G 99.5 6.1E-12 1.3E-16 111.0 24.1 246 4-282 20-279 (1189)
268 KOG1912 WD40 repeat protein [G 99.5 2.3E-11 4.9E-16 108.4 26.6 347 9-419 78-555 (1062)
269 TIGR03300 assembly_YfgL outer 99.5 4.4E-11 9.6E-16 106.6 27.3 307 10-412 65-376 (377)
270 COG5170 CDC55 Serine/threonine 99.5 2.4E-12 5.1E-17 102.1 16.1 283 60-372 25-366 (460)
271 KOG2041 WD40 repeat protein [G 99.5 1.1E-11 2.4E-16 109.4 21.1 281 60-403 13-326 (1189)
272 KOG4547 WD40 repeat-containing 99.5 6.6E-12 1.4E-16 108.2 19.1 169 6-182 1-221 (541)
273 PF04762 IKI3: IKI3 family; I 99.5 7.2E-10 1.6E-14 107.4 34.6 369 3-452 125-560 (928)
274 KOG4547 WD40 repeat-containing 99.5 1.2E-11 2.6E-16 106.6 19.1 191 164-417 6-222 (541)
275 KOG0280 Uncharacterized conser 99.5 1.2E-11 2.7E-16 97.2 17.3 206 64-291 124-334 (339)
276 COG4946 Uncharacterized protei 99.5 6.1E-10 1.3E-14 93.9 28.2 225 7-280 275-507 (668)
277 KOG1064 RAVE (regulator of V-A 99.4 9.5E-13 2.1E-17 127.0 13.0 187 6-241 2216-2405(2439)
278 PF04762 IKI3: IKI3 family; I 99.4 1.3E-09 2.9E-14 105.6 33.7 327 60-455 74-518 (928)
279 KOG4190 Uncharacterized conser 99.4 1.1E-12 2.4E-17 112.2 11.0 176 53-239 727-911 (1034)
280 KOG0309 Conserved WD40 repeat- 99.4 5.7E-12 1.2E-16 111.5 13.6 291 61-416 24-340 (1081)
281 KOG4714 Nucleoporin [Nuclear s 99.4 3.1E-11 6.6E-16 93.4 14.6 201 12-235 49-255 (319)
282 PRK04043 tolB translocation pr 99.4 8.9E-10 1.9E-14 98.0 24.8 208 152-432 189-417 (419)
283 KOG4532 WD40-like repeat conta 99.4 3.6E-10 7.7E-15 88.1 19.2 244 10-291 84-332 (344)
284 PLN02919 haloacid dehalogenase 99.3 1.3E-09 2.8E-14 107.7 27.3 274 154-455 571-887 (1057)
285 KOG3914 WD repeat protein WDR4 99.3 6E-11 1.3E-15 97.6 14.4 167 2-190 66-232 (390)
286 PLN02919 haloacid dehalogenase 99.3 2.6E-09 5.6E-14 105.7 28.0 288 108-419 571-892 (1057)
287 PRK04043 tolB translocation pr 99.3 1.6E-09 3.4E-14 96.4 23.5 181 205-447 189-388 (419)
288 KOG1064 RAVE (regulator of V-A 99.3 1.9E-11 4.1E-16 118.4 11.7 220 118-420 2180-2403(2439)
289 KOG4190 Uncharacterized conser 99.3 3.9E-11 8.5E-16 102.9 10.7 287 101-452 732-1032(1034)
290 KOG0882 Cyclophilin-related pe 99.2 3.3E-10 7.2E-15 94.7 14.6 215 6-241 16-238 (558)
291 PF07433 DUF1513: Protein of u 99.2 3E-08 6.5E-13 81.3 25.5 241 3-289 9-284 (305)
292 KOG3914 WD repeat protein WDR4 99.2 1.1E-09 2.3E-14 90.5 15.5 164 64-244 65-233 (390)
293 PRK11138 outer membrane biogen 99.2 5.5E-08 1.2E-12 87.1 27.8 317 10-414 69-393 (394)
294 PRK11138 outer membrane biogen 99.2 6.5E-08 1.4E-12 86.7 28.2 310 73-454 69-392 (394)
295 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.5E-13 79.8 19.7 203 66-293 72-285 (344)
296 KOG0309 Conserved WD40 repeat- 99.2 2.7E-10 5.9E-15 101.2 12.1 286 103-455 23-338 (1081)
297 PF15492 Nbas_N: Neuroblastoma 99.2 5.1E-08 1.1E-12 77.5 23.0 148 67-225 3-168 (282)
298 PF08450 SGL: SMP-30/Gluconola 99.2 3.6E-07 7.8E-12 76.2 29.5 226 66-403 4-243 (246)
299 COG5170 CDC55 Serine/threonine 99.2 6.2E-10 1.3E-14 88.7 11.5 281 103-454 25-365 (460)
300 KOG0882 Cyclophilin-related pe 99.1 2E-09 4.3E-14 90.2 13.2 270 102-424 7-314 (558)
301 PF15492 Nbas_N: Neuroblastoma 99.1 2.3E-07 4.9E-12 73.9 23.0 235 110-419 3-263 (282)
302 PF00400 WD40: WD domain, G-be 99.1 7.3E-10 1.6E-14 62.1 6.6 38 52-89 2-39 (39)
303 KOG4714 Nucleoporin [Nuclear s 99.1 2.2E-09 4.7E-14 83.4 11.1 150 9-182 100-255 (319)
304 PF00400 WD40: WD domain, G-be 99.0 9.5E-10 2.1E-14 61.6 5.3 39 375-413 1-39 (39)
305 PF07433 DUF1513: Protein of u 99.0 1E-06 2.2E-11 72.5 24.4 240 107-410 7-280 (305)
306 PF08450 SGL: SMP-30/Gluconola 99.0 1.7E-06 3.6E-11 72.2 26.3 217 155-442 4-241 (246)
307 KOG1832 HIV-1 Vpr-binding prot 99.0 1.6E-09 3.6E-14 98.5 7.9 282 50-416 1090-1399(1516)
308 KOG2695 WD40 repeat protein [G 99.0 2.8E-09 6E-14 86.3 8.1 158 167-384 228-387 (425)
309 KOG1645 RING-finger-containing 99.0 9.7E-08 2.1E-12 79.2 16.9 95 130-237 175-269 (463)
310 KOG2066 Vacuolar assembly/sort 99.0 1.5E-07 3.1E-12 85.3 19.2 182 10-236 49-235 (846)
311 KOG1645 RING-finger-containing 98.9 2E-07 4.3E-12 77.4 18.2 95 85-185 175-270 (463)
312 KOG2695 WD40 repeat protein [G 98.9 5.6E-09 1.2E-13 84.6 8.7 155 77-244 228-386 (425)
313 PF13360 PQQ_2: PQQ-like domai 98.9 4.6E-07 9.9E-12 75.4 20.5 228 18-293 1-233 (238)
314 KOG4649 PQQ (pyrrolo-quinoline 98.9 1.4E-05 3E-10 63.0 26.8 147 8-183 21-167 (354)
315 PF00930 DPPIV_N: Dipeptidyl p 98.9 1.9E-06 4E-11 75.9 24.2 303 70-443 1-344 (353)
316 PF13360 PQQ_2: PQQ-like domai 98.9 1.3E-06 2.8E-11 72.7 22.3 233 82-379 2-236 (238)
317 KOG1920 IkappaB kinase complex 98.9 3.2E-07 6.9E-12 87.0 19.3 228 204-455 69-321 (1265)
318 PF14583 Pectate_lyase22: Olig 98.9 1.9E-06 4.2E-11 73.2 22.0 291 89-453 16-378 (386)
319 KOG2066 Vacuolar assembly/sort 98.8 1.4E-07 3.1E-12 85.3 15.5 191 61-290 39-233 (846)
320 cd00216 PQQ_DH Dehydrogenases 98.8 1.2E-05 2.6E-10 74.0 28.5 213 10-240 61-325 (488)
321 PRK02888 nitrous-oxide reducta 98.8 2E-06 4.4E-11 77.7 22.6 294 13-416 69-405 (635)
322 PF06433 Me-amine-dh_H: Methyl 98.8 6.7E-07 1.5E-11 74.5 18.0 286 83-428 17-333 (342)
323 PF00930 DPPIV_N: Dipeptidyl p 98.8 5.3E-06 1.1E-10 73.1 23.9 301 7-403 1-345 (353)
324 KOG1275 PAB-dependent poly(A) 98.8 2.2E-07 4.9E-12 85.2 15.1 184 10-233 147-341 (1118)
325 PF06977 SdiA-regulated: SdiA- 98.8 1.1E-05 2.3E-10 65.8 23.1 221 54-287 14-247 (248)
326 KOG3621 WD40 repeat-containing 98.8 1.2E-06 2.6E-11 78.5 18.2 153 6-184 41-200 (726)
327 KOG4649 PQQ (pyrrolo-quinoline 98.8 4.4E-05 9.6E-10 60.2 27.0 111 73-191 23-133 (354)
328 KOG1832 HIV-1 Vpr-binding prot 98.7 1.8E-08 3.9E-13 91.9 5.9 218 101-401 1098-1317(1516)
329 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.7 0.00014 3E-09 67.3 31.2 216 10-239 69-338 (527)
330 KOG1920 IkappaB kinase complex 98.7 7.6E-06 1.7E-10 78.1 22.7 249 151-456 69-365 (1265)
331 KOG3617 WD40 and TPR repeat-co 98.7 1.7E-06 3.7E-11 79.2 17.5 109 65-181 19-131 (1416)
332 KOG1275 PAB-dependent poly(A) 98.7 5.7E-07 1.2E-11 82.7 14.3 184 73-288 147-340 (1118)
333 KOG2114 Vacuolar assembly/sort 98.7 9.8E-06 2.1E-10 74.5 21.8 219 111-388 30-259 (933)
334 PF06433 Me-amine-dh_H: Methyl 98.6 1.3E-05 2.9E-10 66.9 19.2 275 20-383 17-330 (342)
335 KOG1008 Uncharacterized conser 98.6 5.6E-08 1.2E-12 85.6 5.4 206 61-291 56-276 (783)
336 COG0823 TolB Periplasmic compo 98.6 9.4E-06 2E-10 72.1 18.3 190 146-405 188-389 (425)
337 PRK02888 nitrous-oxide reducta 98.6 8.7E-06 1.9E-10 73.8 17.9 101 352-455 285-403 (635)
338 PF08596 Lgl_C: Lethal giant l 98.6 4.8E-05 1E-09 67.0 22.2 279 63-405 3-326 (395)
339 KOG2114 Vacuolar assembly/sort 98.6 3.1E-05 6.7E-10 71.4 21.2 198 63-291 27-244 (933)
340 KOG3617 WD40 and TPR repeat-co 98.5 6.9E-06 1.5E-10 75.3 16.6 110 153-291 18-132 (1416)
341 KOG3621 WD40 repeat-containing 98.5 0.00012 2.7E-09 66.1 23.9 120 60-182 32-155 (726)
342 cd00216 PQQ_DH Dehydrogenases 98.5 0.00042 9.1E-09 64.0 28.2 312 73-443 61-455 (488)
343 COG0823 TolB Periplasmic compo 98.5 4.2E-05 9E-10 68.1 19.9 174 84-291 174-359 (425)
344 PF08596 Lgl_C: Lethal giant l 98.5 5E-05 1.1E-09 66.9 19.9 266 3-291 6-336 (395)
345 PF00780 CNH: CNH domain; Int 98.4 0.00065 1.4E-08 57.9 24.9 146 71-238 5-169 (275)
346 PF11768 DUF3312: Protein of u 98.4 0.00074 1.6E-08 60.2 24.7 88 368-456 239-329 (545)
347 KOG1008 Uncharacterized conser 98.4 3.8E-07 8.2E-12 80.6 4.7 202 5-237 65-278 (783)
348 PF14583 Pectate_lyase22: Olig 98.4 0.0012 2.6E-08 56.8 28.0 275 68-414 42-380 (386)
349 PF04053 Coatomer_WDAD: Coatom 98.4 0.00031 6.8E-09 62.9 22.4 220 149-455 31-261 (443)
350 PF04053 Coatomer_WDAD: Coatom 98.3 0.00046 9.9E-09 61.9 22.8 231 104-417 32-264 (443)
351 PF06977 SdiA-regulated: SdiA- 98.3 0.00049 1.1E-08 56.2 21.0 222 144-412 15-247 (248)
352 COG3490 Uncharacterized protei 98.3 0.00041 8.9E-09 55.8 19.3 204 55-289 113-347 (366)
353 COG3391 Uncharacterized conser 98.3 0.0029 6.2E-08 56.4 28.7 284 85-438 13-310 (381)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.003 6.5E-08 58.7 27.1 159 25-191 21-199 (527)
355 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00019 4.2E-09 49.3 13.7 102 64-177 2-110 (111)
356 PF11768 DUF3312: Protein of u 98.2 9.7E-06 2.1E-10 71.6 8.9 75 59-138 257-331 (545)
357 COG3204 Uncharacterized protei 98.1 0.0036 7.9E-08 51.0 21.1 177 57-236 81-265 (316)
358 PF03178 CPSF_A: CPSF A subuni 98.1 0.0024 5.1E-08 55.8 21.7 221 173-452 2-261 (321)
359 KOG4640 Anaphase-promoting com 98.1 2.3E-05 4.9E-10 69.7 8.6 90 344-435 22-114 (665)
360 PF03178 CPSF_A: CPSF A subuni 98.0 0.0061 1.3E-07 53.2 23.6 135 83-233 2-156 (321)
361 PF02897 Peptidase_S9_N: Proly 98.0 0.012 2.5E-07 53.6 25.6 117 63-183 125-262 (414)
362 PF14655 RAB3GAP2_N: Rab3 GTPa 98.0 0.0097 2.1E-07 52.6 27.4 92 66-160 6-118 (415)
363 smart00320 WD40 WD40 repeats. 98.0 2.6E-05 5.6E-10 43.1 5.5 37 53-89 4-40 (40)
364 smart00320 WD40 WD40 repeats. 98.0 3E-05 6.5E-10 42.8 5.7 39 375-413 2-40 (40)
365 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00096 2.1E-08 45.9 13.4 101 345-451 2-109 (111)
366 COG3386 Gluconolactonase [Carb 98.0 0.0082 1.8E-07 51.1 22.0 226 156-447 30-277 (307)
367 COG3386 Gluconolactonase [Carb 98.0 0.0074 1.6E-07 51.4 21.7 225 111-404 31-274 (307)
368 KOG1897 Damage-specific DNA bi 98.0 0.02 4.3E-07 54.8 32.5 354 71-455 497-897 (1096)
369 PF14727 PHTB1_N: PTHB1 N-term 97.9 0.013 2.7E-07 52.1 27.0 150 73-235 37-205 (418)
370 COG3391 Uncharacterized conser 97.9 0.014 3E-07 52.1 27.2 267 63-397 32-310 (381)
371 KOG1897 Damage-specific DNA bi 97.9 0.023 5E-07 54.4 32.6 322 62-454 584-940 (1096)
372 PF04841 Vps16_N: Vps16, N-ter 97.8 0.025 5.5E-07 50.9 28.4 179 84-291 62-247 (410)
373 PF00780 CNH: CNH domain; Int 97.8 0.018 3.9E-07 49.1 22.9 250 117-423 6-263 (275)
374 PF04841 Vps16_N: Vps16, N-ter 97.8 0.029 6.2E-07 50.5 29.8 68 344-414 218-286 (410)
375 PF05096 Glu_cyclase_2: Glutam 97.7 0.016 3.5E-07 47.3 21.3 216 49-280 31-250 (264)
376 PF08553 VID27: VID27 cytoplas 97.7 0.0069 1.5E-07 57.9 19.7 148 73-234 493-647 (794)
377 KOG4640 Anaphase-promoting com 97.7 0.0002 4.2E-09 64.0 9.0 94 62-160 21-115 (665)
378 PF05096 Glu_cyclase_2: Glutam 97.7 0.01 2.2E-07 48.4 17.8 187 8-223 54-250 (264)
379 PF08553 VID27: VID27 cytoplas 97.7 0.0021 4.7E-08 61.1 15.1 148 117-290 492-647 (794)
380 PRK13616 lipoprotein LpqB; Pro 97.6 0.037 8.1E-07 52.1 21.9 154 61-234 349-525 (591)
381 KOG2395 Protein involved in va 97.6 0.0032 6.9E-08 55.5 13.5 142 218-413 348-498 (644)
382 PRK13616 lipoprotein LpqB; Pro 97.5 0.0026 5.6E-08 59.6 14.0 105 345-455 399-524 (591)
383 COG5276 Uncharacterized conser 97.5 0.036 7.8E-07 45.4 28.8 323 57-456 37-369 (370)
384 COG3490 Uncharacterized protei 97.5 0.035 7.6E-07 45.2 20.5 247 106-414 69-347 (366)
385 COG3204 Uncharacterized protei 97.5 0.039 8.4E-07 45.3 20.4 145 130-290 65-210 (316)
386 KOG4441 Proteins containing BT 97.5 0.046 9.9E-07 51.5 21.3 155 70-241 282-459 (571)
387 PF05694 SBP56: 56kDa selenium 97.5 0.063 1.4E-06 47.1 21.2 58 386-443 312-390 (461)
388 PF02897 Peptidase_S9_N: Proly 97.5 0.086 1.9E-06 48.1 25.7 224 152-438 125-382 (414)
389 PF15390 DUF4613: Domain of un 97.4 0.086 1.9E-06 47.8 27.8 156 62-236 20-188 (671)
390 PF12234 Rav1p_C: RAVE protein 97.4 0.015 3.2E-07 54.1 17.0 129 49-180 17-155 (631)
391 PF05694 SBP56: 56kDa selenium 97.4 0.079 1.7E-06 46.5 21.9 210 9-237 86-345 (461)
392 KOG2395 Protein involved in va 97.4 0.0044 9.5E-08 54.7 12.0 151 117-291 344-501 (644)
393 PHA02713 hypothetical protein; 97.4 0.024 5.1E-07 53.4 17.9 67 354-422 463-540 (557)
394 TIGR03074 PQQ_membr_DH membran 97.3 0.18 3.8E-06 49.2 32.1 215 10-241 194-484 (764)
395 PF07995 GSDH: Glucose / Sorbo 97.3 0.093 2E-06 45.9 22.6 66 386-451 253-330 (331)
396 KOG4441 Proteins containing BT 97.3 0.089 1.9E-06 49.6 21.0 234 117-422 284-553 (571)
397 PHA02713 hypothetical protein; 97.2 0.054 1.2E-06 51.1 18.4 95 84-184 273-378 (557)
398 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.7E-08 37.2 5.3 34 61-95 11-44 (47)
399 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0022 4.8E-08 36.7 4.7 31 385-415 11-41 (47)
400 KOG2444 WD40 repeat protein [G 96.9 0.0025 5.4E-08 49.8 5.5 101 355-455 70-176 (238)
401 PF10168 Nup88: Nuclear pore c 96.9 0.45 9.8E-06 46.0 21.3 127 11-139 34-182 (717)
402 KOG2444 WD40 repeat protein [G 96.8 0.0063 1.4E-07 47.7 7.2 105 10-137 70-178 (238)
403 KOG2079 Vacuolar assembly/sort 96.7 0.0062 1.3E-07 58.5 7.8 100 354-455 98-202 (1206)
404 TIGR02604 Piru_Ver_Nterm putat 96.7 0.093 2E-06 46.8 14.6 97 345-445 74-202 (367)
405 PF07995 GSDH: Glucose / Sorbo 96.6 0.48 1E-05 41.5 28.3 76 332-410 245-330 (331)
406 KOG2079 Vacuolar assembly/sort 96.5 0.016 3.6E-07 55.8 8.8 102 72-180 98-202 (1206)
407 KOG4499 Ca2+-binding protein R 96.5 0.32 7E-06 38.7 15.5 91 346-437 161-264 (310)
408 PF14655 RAB3GAP2_N: Rab3 GTPa 96.4 0.65 1.4E-05 41.5 25.8 75 345-420 310-403 (415)
409 KOG3630 Nuclear pore complex, 96.3 0.093 2E-06 51.4 12.5 153 260-443 99-260 (1405)
410 PF10647 Gmad1: Lipoprotein Lp 96.3 0.55 1.2E-05 39.2 22.5 154 63-226 25-187 (253)
411 COG3823 Glutamine cyclotransfe 96.2 0.26 5.7E-06 38.4 12.4 135 80-222 108-247 (262)
412 KOG4499 Ca2+-binding protein R 96.2 0.46 9.9E-06 37.9 19.1 47 347-394 216-262 (310)
413 KOG2377 Uncharacterized conser 96.2 0.23 4.9E-06 43.6 13.2 157 3-183 27-187 (657)
414 PF08728 CRT10: CRT10; InterP 96.2 0.67 1.4E-05 44.2 17.1 101 354-455 113-245 (717)
415 PHA03098 kelch-like protein; P 96.1 0.66 1.4E-05 44.0 17.8 150 72-238 342-515 (534)
416 PF12234 Rav1p_C: RAVE protein 96.1 0.15 3.2E-06 47.9 12.7 102 352-455 38-155 (631)
417 PF10647 Gmad1: Lipoprotein Lp 96.1 0.69 1.5E-05 38.7 21.1 112 152-290 25-144 (253)
418 PF10313 DUF2415: Uncharacteri 96.0 0.032 6.8E-07 30.9 4.9 31 205-235 2-34 (43)
419 PF15390 DUF4613: Domain of un 96.0 1.2 2.7E-05 40.8 23.9 122 59-183 54-188 (671)
420 PRK10115 protease 2; Provision 95.9 1.8 4E-05 42.2 28.6 73 105-183 127-209 (686)
421 KOG3630 Nuclear pore complex, 95.9 0.18 3.9E-06 49.5 12.4 149 106-280 102-262 (1405)
422 PF10313 DUF2415: Uncharacteri 95.9 0.054 1.2E-06 30.0 5.4 32 62-93 1-35 (43)
423 PHA03098 kelch-like protein; P 95.9 1.1 2.4E-05 42.6 17.9 189 71-292 293-513 (534)
424 PF08728 CRT10: CRT10; InterP 95.8 0.63 1.4E-05 44.4 15.3 162 10-180 49-245 (717)
425 COG4257 Vgb Streptogramin lyas 95.7 0.97 2.1E-05 37.1 22.1 267 104-448 61-340 (353)
426 KOG1916 Nuclear protein, conta 95.6 0.0069 1.5E-07 57.1 1.9 198 127-420 110-328 (1283)
427 PLN00033 photosystem II stabil 95.5 1.4 3E-05 39.6 15.9 105 344-453 282-396 (398)
428 COG4590 ABC-type uncharacteriz 95.5 0.29 6.3E-06 43.0 11.0 160 260-455 219-385 (733)
429 TIGR02604 Piru_Ver_Nterm putat 95.4 1.8 4E-05 38.6 25.0 72 105-181 14-99 (367)
430 PF14870 PSII_BNR: Photosynthe 95.4 1.5 3.3E-05 37.5 26.1 191 63-286 63-257 (302)
431 COG3292 Predicted periplasmic 95.4 2.1 4.6E-05 39.2 18.5 68 345-417 421-493 (671)
432 PF14870 PSII_BNR: Photosynthe 95.4 1.6 3.4E-05 37.4 30.9 149 260-453 143-301 (302)
433 PHA02790 Kelch-like protein; P 95.3 2.5 5.3E-05 39.4 19.1 147 71-237 317-473 (480)
434 PF03022 MRJP: Major royal jel 95.2 1.8 3.9E-05 37.0 17.4 198 174-403 35-253 (287)
435 PRK10115 protease 2; Provision 95.2 3.5 7.6E-05 40.4 30.1 115 62-181 127-255 (686)
436 PRK13684 Ycf48-like protein; P 95.1 2.2 4.7E-05 37.5 29.9 150 261-454 172-329 (334)
437 KOG2280 Vacuolar assembly/sort 95.0 3.4 7.3E-05 39.3 19.6 94 345-444 219-313 (829)
438 PRK13684 Ycf48-like protein; P 94.9 2.4 5.2E-05 37.2 26.4 153 205-414 174-330 (334)
439 PF14727 PHTB1_N: PTHB1 N-term 94.8 2.9 6.2E-05 37.7 27.4 155 117-290 36-204 (418)
440 KOG2377 Uncharacterized conser 94.8 1 2.2E-05 39.8 12.3 95 344-441 68-168 (657)
441 COG3292 Predicted periplasmic 94.7 3.4 7.4E-05 37.9 18.1 153 61-232 164-316 (671)
442 COG4257 Vgb Streptogramin lyas 94.6 2.1 4.6E-05 35.2 17.3 200 152-418 63-265 (353)
443 PF10168 Nup88: Nuclear pore c 94.6 2.8 6.1E-05 40.8 16.2 94 261-375 84-181 (717)
444 PHA02790 Kelch-like protein; P 94.6 3.9 8.5E-05 38.1 17.5 147 72-239 271-428 (480)
445 PF07569 Hira: TUP1-like enhan 94.6 0.25 5.4E-06 40.0 8.1 69 216-292 22-97 (219)
446 KOG3616 Selective LIM binding 94.5 0.6 1.3E-05 43.9 11.0 95 104-214 14-108 (1636)
447 PF11635 Med16: Mediator compl 94.4 5.8 0.00013 39.4 20.9 66 344-410 261-345 (753)
448 PF07569 Hira: TUP1-like enhan 94.4 0.35 7.7E-06 39.2 8.5 70 352-422 19-102 (219)
449 PF14781 BBS2_N: Ciliary BBSom 94.3 1.4 3.1E-05 31.8 10.7 101 352-455 7-124 (136)
450 COG4590 ABC-type uncharacteriz 94.3 0.45 9.7E-06 41.9 9.1 168 101-294 217-390 (733)
451 TIGR03074 PQQ_membr_DH membran 94.1 6.7 0.00014 38.8 26.5 158 33-191 146-354 (764)
452 PF12657 TFIIIC_delta: Transcr 93.9 1.2 2.6E-05 34.7 10.3 30 344-374 87-122 (173)
453 PF14761 HPS3_N: Hermansky-Pud 93.7 2.9 6.2E-05 33.3 14.9 118 164-292 30-165 (215)
454 PF13449 Phytase-like: Esteras 93.7 4.5 9.7E-05 35.5 20.2 70 345-415 149-249 (326)
455 TIGR02276 beta_rpt_yvtn 40-res 93.7 0.48 1E-05 26.2 5.9 40 353-393 1-41 (42)
456 KOG2280 Vacuolar assembly/sort 93.6 7 0.00015 37.4 17.4 180 21-238 65-250 (829)
457 COG5276 Uncharacterized conser 93.4 4.2 9E-05 34.0 25.1 156 62-237 87-244 (370)
458 PF13449 Phytase-like: Esteras 93.3 5.3 0.00011 35.0 15.9 164 104-278 19-231 (326)
459 PF11635 Med16: Mediator compl 93.2 9.8 0.00021 37.8 19.3 81 204-285 260-345 (753)
460 PF10214 Rrn6: RNA polymerase 93.1 10 0.00022 37.9 22.0 88 203-292 145-234 (765)
461 COG5167 VID27 Protein involved 92.9 2 4.3E-05 38.8 10.9 61 353-414 571-631 (776)
462 KOG1916 Nuclear protein, conta 92.8 0.19 4.2E-06 48.0 5.0 121 62-186 181-328 (1283)
463 PF07676 PD40: WD40-like Beta 92.5 0.47 1E-05 25.8 4.5 30 424-453 6-38 (39)
464 KOG2247 WD40 repeat-containing 92.0 0.03 6.4E-07 49.3 -1.1 144 64-227 37-181 (615)
465 KOG1900 Nuclear pore complex, 91.9 3.9 8.5E-05 41.6 12.6 150 4-182 85-273 (1311)
466 COG3823 Glutamine cyclotransfe 91.8 5.4 0.00012 31.5 15.5 110 109-237 50-161 (262)
467 PF12657 TFIIIC_delta: Transcr 91.7 2.2 4.9E-05 33.2 9.1 28 428-455 87-120 (173)
468 PF12768 Rax2: Cortical protei 91.7 2.5 5.4E-05 35.8 9.8 92 364-455 15-120 (281)
469 KOG4460 Nuclear pore complex, 91.7 7.5 0.00016 35.5 12.8 26 106-133 105-130 (741)
470 KOG1983 Tomosyn and related SN 91.3 10 0.00022 38.9 15.2 33 62-94 36-68 (993)
471 smart00036 CNH Domain found in 91.3 9 0.00019 33.1 28.3 61 72-137 12-74 (302)
472 TIGR03118 PEPCTERM_chp_1 conse 91.3 8.3 0.00018 32.7 25.3 247 152-436 24-307 (336)
473 PF14761 HPS3_N: Hermansky-Pud 91.3 6.5 0.00014 31.4 14.2 149 74-233 29-213 (215)
474 PF10214 Rrn6: RNA polymerase 91.2 18 0.00038 36.3 22.4 124 151-291 146-277 (765)
475 PF14781 BBS2_N: Ciliary BBSom 91.0 4.6 0.0001 29.3 12.0 113 66-184 3-128 (136)
476 KOG2247 WD40 repeat-containing 90.8 0.028 6E-07 49.5 -2.4 106 61-173 74-180 (615)
477 COG5167 VID27 Protein involved 90.8 8.3 0.00018 35.1 12.2 148 117-291 478-633 (776)
478 TIGR02276 beta_rpt_yvtn 40-res 90.4 1.4 2.9E-05 24.3 5.2 31 160-190 1-31 (42)
479 PF11725 AvrE: Pathogenicity f 90.3 28 0.00061 37.1 18.3 156 59-237 360-519 (1774)
480 PF07676 PD40: WD40-like Beta 90.2 1.4 3E-05 23.9 4.9 30 383-412 6-38 (39)
481 TIGR03118 PEPCTERM_chp_1 conse 89.8 11 0.00025 31.9 25.0 123 106-237 24-173 (336)
482 PF07250 Glyoxal_oxid_N: Glyox 89.6 10 0.00022 31.3 11.3 146 84-238 47-201 (243)
483 PLN00033 photosystem II stabil 89.6 16 0.00034 33.1 31.7 114 261-412 280-396 (398)
484 TIGR03606 non_repeat_PQQ dehyd 89.5 17 0.00036 33.4 14.6 117 54-173 22-167 (454)
485 PF03088 Str_synth: Strictosid 89.1 2.8 6.1E-05 28.1 6.4 53 402-455 32-84 (89)
486 PF05935 Arylsulfotrans: Aryls 88.7 21 0.00045 33.4 15.1 117 67-190 153-310 (477)
487 KOG3522 Predicted guanine nucl 88.5 3.4 7.3E-05 39.8 8.7 151 119-293 548-700 (925)
488 PF05935 Arylsulfotrans: Aryls 88.5 22 0.00047 33.3 15.5 155 75-238 117-305 (477)
489 KOG1900 Nuclear pore complex, 88.4 14 0.0003 38.0 13.1 186 151-374 79-273 (1311)
490 PF08801 Nucleoporin_N: Nup133 88.3 14 0.00031 33.9 12.8 30 205-235 191-220 (422)
491 PF02333 Phytase: Phytase; In 88.1 18 0.0004 32.1 21.6 196 8-235 66-291 (381)
492 KOG1983 Tomosyn and related SN 87.8 15 0.00033 37.7 13.4 34 103-138 34-67 (993)
493 PF11715 Nup160: Nucleoporin N 87.6 1.7 3.7E-05 41.4 6.7 38 62-99 215-256 (547)
494 PF11715 Nup160: Nucleoporin N 87.0 3.5 7.5E-05 39.3 8.4 74 117-190 157-257 (547)
495 PF02333 Phytase: Phytase; In 86.4 23 0.00051 31.5 19.5 195 71-291 66-291 (381)
496 KOG1896 mRNA cleavage and poly 86.3 43 0.00094 34.5 15.6 190 7-231 991-1210(1366)
497 PF10395 Utp8: Utp8 family; I 86.1 34 0.00073 33.0 15.8 171 61-243 129-314 (670)
498 KOG4460 Nuclear pore complex, 85.9 28 0.00062 32.0 13.3 96 262-377 104-202 (741)
499 PF12768 Rax2: Cortical protei 85.5 22 0.00047 30.3 12.4 81 19-122 15-105 (281)
500 PLN02153 epithiospecifier prot 85.0 27 0.00058 30.9 19.1 108 72-185 32-171 (341)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-62 Score=389.36 Aligned_cols=332 Identities=21% Similarity=0.298 Sum_probs=295.7
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
++...+.||.++|.|++|+|+|..||+|+.|.++++||+.+..+..+. ++|...|.+++|+| ||+.||+|+.||+|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsP--Dgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSP--DGKKIASGSKDGSIR 182 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECC--CcchhhccccCCeEE
Confidence 455678899999999999999999999999999999999999998887 89999999999999 999999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCC----CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGS----PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
+||..+++++. ..+.+|...|++++|.|-. ..+|++++.||.++|||+..+.++..+.. |..+|+
T Consensus 183 lwdpktg~~~g-~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg----------HT~~VT 251 (480)
T KOG0271|consen 183 LWDPKTGQQIG-RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG----------HTASVT 251 (480)
T ss_pred EecCCCCCccc-ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc----------CccceE
Confidence 99999988765 3489999999999998732 25799999999999999999988877754 566899
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC-----------CC----
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-----------DQ---- 272 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------~~---- 272 (458)
|+.|--+ .++++|+.|++|++|+...+.. ...+.+|...|+.++.+ |.
T Consensus 252 CvrwGG~--gliySgS~DrtIkvw~a~dG~~---------------~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 252 CVRWGGE--GLIYSGSQDRTIKVWRALDGKL---------------CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred EEEEcCC--ceEEecCCCceEEEEEccchhH---------------HHhhcccchheeeeeccchhhhhccccccccccC
Confidence 9999864 5999999999999999988764 33455677777777766 22
Q ss_pred ---------------------CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccc
Q 012712 273 ---------------------SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR 330 (458)
Q Consensus 273 ---------------------~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (458)
++.|++++|| ++.+|+.... .
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~-------------------------------------k 357 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS-------------------------------------K 357 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc-------------------------------------c
Confidence 2359999977 7999997653 4
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
+++....+|... |+.+.| |||++++|+++.|..|++|+..+|+.+.+|++|-+.|+.++|+.|.++|++|+.|.+++
T Consensus 358 kpi~rmtgHq~l--Vn~V~f-SPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 358 KPITRMTGHQAL--VNHVSF-SPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred cchhhhhchhhh--eeeEEE-CCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEE
Confidence 567778888885 899998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 411 ILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 411 iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+|++.+.++. .+++|...|.++.|+|||..+++|+.|..+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999998776 7899999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-60 Score=378.99 Aligned_cols=321 Identities=19% Similarity=0.248 Sum_probs=286.8
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
++.|+|++++|++|+.|.++|+||+.|...+ .+.++|..-|.|++|+|||+.||+|+.|
T Consensus 120 ~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~---------------------~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 120 SVQFSPTGSRLVTGSGDTTVRLWDLDTETPL---------------------FTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred EEEecCCCceEEecCCCceEEeeccCCCCcc---------------------eeecCCccEEEEEEECCCcchhhccccC
Confidence 4679999999999999999999999987665 5689999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
|+|++||.++|+++...+.+|...|++++|.|. ...++||+++.||.++|||+..+.++.. +.+|+.+|+|+.|-
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~--lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRT--LSGHTASVTCVRWG 256 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEE--eccCccceEEEEEc
Confidence 999999999999988888999999999999873 3667999999999999999988877765 89999999999998
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-----------CC--------------
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-----------PR-------------- 214 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~-------------- 214 (458)
-+| ++++++.|++|++|+...|.+...++. |...|+.++++ |.
T Consensus 257 G~g--liySgS~DrtIkvw~a~dG~~~r~lkG----------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 257 GEG--LIYSGSQDRTIKVWRALDGKLCRELKG----------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred CCc--eEEecCCCceEEEEEccchhHHHhhcc----------cchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 766 799999999999999999988877764 33356666655 22
Q ss_pred ----------CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712 215 ----------NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (458)
Q Consensus 215 ----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (458)
++..+++|+.|.++.+|+....+ .+...+.+|..-|+.+.|+||++++|+++ |..
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc--------------cchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 23469999999999999987654 34566778999999999999999999999 558
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
|++|+..+ ++.+..|++|... |..++| +.|.++|++|+.
T Consensus 391 VkLW~g~t--------------------------------------Gk~lasfRGHv~~--VYqvaw-saDsRLlVS~Sk 429 (480)
T KOG0271|consen 391 VKLWDGRT--------------------------------------GKFLASFRGHVAA--VYQVAW-SADSRLLVSGSK 429 (480)
T ss_pred eeeeeCCC--------------------------------------cchhhhhhhccce--eEEEEe-ccCccEEEEcCC
Confidence 99999998 5678889999986 899999 999999999999
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
|.++++|++.+.++...+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 430 DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 430 DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999999995
No 3
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-50 Score=333.83 Aligned_cols=420 Identities=13% Similarity=0.165 Sum_probs=319.4
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccc-cccc-----------------------------------------------
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTR----------------------------------------------- 35 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~-~~~~----------------------------------------------- 35 (458)
+-|+|.|-++|+|...|.|||||....+ .++.
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT 144 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee
Confidence 4589999999999999999999987522 2222
Q ss_pred --------------cccccccccccceEEe------eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce
Q 012712 36 --------------NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (458)
Q Consensus 36 --------------~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 95 (458)
+..+++++++|....+ +...+++.|...|+|++|+|||.++||++.||.|.+||=.+++.
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~ 224 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK 224 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccE
Confidence 2233778888887665 67778889999999999999999999999999999999999999
Q ss_pred eeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccc-ccceEEEEEcCCCCeEEEEecCC
Q 012712 96 KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKH-QGRAHKLAIEPGSPHVFYTCGED 172 (458)
Q Consensus 96 ~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~~~d 172 (458)
+..+. .+|++.|++++|+| |+..+++++.|.++++||+.+.+.+.+..+... .+.-..+.|.. ..|++.+.+
T Consensus 225 vg~l~~~~aHkGsIfalsWsP--Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk---d~lItVSl~ 299 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSP--DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK---DHLITVSLS 299 (603)
T ss_pred EEEecCCCCccccEEEEEECC--CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeC---CeEEEEEcC
Confidence 88873 38999999999999 999999999999999999999887766433322 13334445552 358999999
Q ss_pred CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (458)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (458)
|.|.+++...++....+.. |...|+++..+|+ +.+|++|+.||.|.-|+..++...
T Consensus 300 G~in~ln~~d~~~~~~i~G----------HnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~------------- 355 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISG----------HNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSD------------- 355 (603)
T ss_pred cEEEEecccCCChhheecc----------cccceeEEEEcCC-CCEEEeeccCceEEEEecCCcccc-------------
Confidence 9999999999887666654 5568999999998 599999999999999999887531
Q ss_pred CCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
......|...|.+++-+..+.++.++-|+++++.++.......... -....++.......++.........+....+.
T Consensus 356 -~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~ 433 (603)
T KOG0318|consen 356 -RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVLLQD 433 (603)
T ss_pred -ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccce-eecCCCceeEEEcCCCCEEEEEecCcEEEEec
Confidence 2233567889999999998999988889999999886543221110 01111122223333322222211111111110
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE--EEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
........-.....++++ +|++++++.|+.||.|+||.+..+++. ..+..|.++|+++++|||+.+||++...+.+.
T Consensus 434 ~~~~~~~~~~y~~s~vAv-~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAV-SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred CCcceeeccccccceEEE-cCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 000000011112567887 999999999999999999999776543 34567999999999999999999999999999
Q ss_pred EecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 411 ILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 411 iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
+|++.+.+.. ...-|..+|.+++|||+.+.+|||+-|-+|.||+.
T Consensus 513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 9999988664 44569999999999999999999999999999985
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.6e-52 Score=332.82 Aligned_cols=290 Identities=22% Similarity=0.313 Sum_probs=260.7
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
+...--|-+.+|..+.||+|++.||||+.+|.++||+..+...+..+ .+|...|.++.|+|..++..+|||+.||++++
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccCCceee
Confidence 33344467899999999999999999999999999999999877777 89999999999999433678999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
|++.+...+.. +.+|...|..++|+|+| ++|++++.|.+-++||++++...-... | |...|.+++|+
T Consensus 246 w~~~~e~~l~~--l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QE--------G--Hs~~v~~iaf~ 312 (459)
T KOG0272|consen 246 WKLSQETPLQD--LEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQE--------G--HSKGVFSIAFQ 312 (459)
T ss_pred eccCCCcchhh--hhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhc--------c--cccccceeEec
Confidence 99988777766 89999999999999999 789999999999999999987655443 2 55689999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
|| |.++++|+.|..-+|||+++++. ..++.+|..+|.+++|+|+|..||+|+ |++++|||++.
T Consensus 313 ~D-GSL~~tGGlD~~~RvWDlRtgr~---------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 313 PD-GSLAATGGLDSLGRVWDLRTGRC---------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred CC-CceeeccCccchhheeecccCcE---------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 98 78999999999999999999863 446677999999999999999999999 55899999987
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEE
Q 012712 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iw 370 (458)
......+.+|.+- |..+.| +| .|.+|++++.|++++||
T Consensus 377 --------------------------------------r~~ly~ipAH~nl--VS~Vk~-~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 377 --------------------------------------RSELYTIPAHSNL--VSQVKY-SPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred --------------------------------------cccceecccccch--hhheEe-cccCCeEEEEcccCcceeee
Confidence 4557778889885 899998 98 78999999999999999
Q ss_pred EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
...++.+++++.+|.+.|.++.++||+++++|++.|.++++|.
T Consensus 416 s~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999996
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.3e-50 Score=345.98 Aligned_cols=374 Identities=17% Similarity=0.180 Sum_probs=309.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCC--EEEEecC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGD--ILISGSD 81 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~~~ 81 (458)
+.|+|.+.+|++|+.|+.|+|||+..+.+. +.|+||.+.|.++.|.|+-+ .|++|..
T Consensus 111 ma~~~~g~LlAtggaD~~v~VWdi~~~~~t---------------------h~fkG~gGvVssl~F~~~~~~~lL~sg~~ 169 (775)
T KOG0319|consen 111 MAFDPTGTLLATGGADGRVKVWDIKNGYCT---------------------HSFKGHGGVVSSLLFHPHWNRWLLASGAT 169 (775)
T ss_pred EEEcCCCceEEeccccceEEEEEeeCCEEE---------------------EEecCCCceEEEEEeCCccchhheeecCC
Confidence 357889999999999999999999977665 56999999999999999764 5899999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce--------------------
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-------------------- 141 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-------------------- 141 (458)
|+++++||+.+.......+..|...|++++|++ |+..+++++.|..+.+||+.+.+..
T Consensus 170 D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 170 DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred CceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 999999999966653334478999999999999 8888888888888888877332111
Q ss_pred --------------------------------------------------------------------------------
Q 012712 142 -------------------------------------------------------------------------------- 141 (458)
Q Consensus 142 -------------------------------------------------------------------------------- 141 (458)
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence
Q ss_pred -----------------------------eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeec
Q 012712 142 -----------------------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (458)
Q Consensus 142 -----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (458)
....+.+|+..|.++....+| .+|++|+.|.++++|.++.+...... ..
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~-~a 405 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC-VA 405 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh-hh
Confidence 001123488888888866666 68999999999999988544322111 11
Q ss_pred ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (458)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (458)
. ..+ |...|.+++++..+..+|++++.|+++++|++...+.... | ..+........|...|++++++|+
T Consensus 406 ~---~~g--H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-----~-~~~~~~~t~~aHdKdIN~Vaia~n 474 (775)
T KOG0319|consen 406 Q---ANG--HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-----P-IVLTCRYTERAHDKDINCVAIAPN 474 (775)
T ss_pred h---hcc--cccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----c-ceehhhHHHHhhcccccceEecCC
Confidence 1 112 5557899999887778999999999999999987332211 1 111122345568999999999999
Q ss_pred CcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 273 SELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 273 ~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
.+++|+|+.| +.++|+++. ......+.||... +.++.|
T Consensus 475 dkLiAT~SqDktaKiW~le~--------------------------------------~~l~~vLsGH~RG--vw~V~F- 513 (775)
T KOG0319|consen 475 DKLIATGSQDKTAKIWDLEQ--------------------------------------LRLLGVLSGHTRG--VWCVSF- 513 (775)
T ss_pred CceEEecccccceeeecccC--------------------------------------ceEEEEeeCCccc--eEEEEe-
Confidence 9999999966 799999985 5678899999986 899999
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEE
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVC 430 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~ 430 (458)
+|..+.+++++.|++|+||.+.+..+++++.||...|..+.|-.+|+.|++++.||.|++|++.++++. .+..|..+|+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 7889999999
Q ss_pred EEEEecCCcEEEeeecCCceEEEE
Q 012712 431 FSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 431 ~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+++-+|.+..++||+.||.|.+|+
T Consensus 594 aL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 594 ALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred EEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999996
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-50 Score=324.17 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=256.8
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC-CCeEEEEecCCCeEEEEeC
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~~~dg~i~iwd~ 180 (458)
+-+.+|..+.|++ +++.|+||+.+|.+++|+..+...+.+ +.+|...+.++.|+|. ....+++|+.||++++|++
T Consensus 173 gd~rPis~~~fS~--ds~~laT~swsG~~kvW~~~~~~~~~~--l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSR--DSKHLATGSWSGLVKVWSVPQCNLLQT--LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeec--CCCeEEEeecCCceeEeecCCcceeEE--EeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 5577899999999 999999999999999999988765555 9999999999999998 3467999999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
.+..++..+.. |...|..++|+|+ |++|++++.|.+-++||+++... .....+|
T Consensus 249 ~~e~~l~~l~g----------H~~RVs~VafHPs-G~~L~TasfD~tWRlWD~~tk~E---------------lL~QEGH 302 (459)
T KOG0272|consen 249 SQETPLQDLEG----------HLARVSRVAFHPS-GKFLGTASFDSTWRLWDLETKSE---------------LLLQEGH 302 (459)
T ss_pred CCCcchhhhhc----------chhhheeeeecCC-Cceeeecccccchhhcccccchh---------------hHhhccc
Confidence 99887777754 4457999999998 79999999999999999999764 2345678
Q ss_pred ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|.+++|.|||.++++|+-| .-++||+++ +.++..+.+|
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--------------------------------------gr~im~L~gH 344 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--------------------------------------GRCIMFLAGH 344 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeeccc--------------------------------------CcEEEEeccc
Confidence 9999999999999999999966 689999999 5678889999
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC-CCCeEEEeecCCcEEEecCCccc
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
..+ |.+++| +|+|..||+|+.|++++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|++++||...+..
T Consensus 345 ~k~--I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 345 IKE--ILSVAF-SPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS 421 (459)
T ss_pred ccc--eeeEeE-CCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc
Confidence 886 999999 99999999999999999999999999999999999999999998 78899999999999999999987
Q ss_pred cc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 419 RA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 419 ~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+. .+.+|.+.|.+++.+|||.+++|++.|.++++|.
T Consensus 422 ~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 76 7889999999999999999999999999999995
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.5e-48 Score=295.37 Aligned_cols=297 Identities=18% Similarity=0.290 Sum_probs=262.0
Q ss_pred eEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
..+++..++|+||.+.|.++.|++|.++|++++.||.+.|||.-+...++.+ .-....|..++|+| .++++|.|+.|
T Consensus 42 ~i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sP--Sg~~VAcGGLd 118 (343)
T KOG0286|consen 42 RIQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSP--SGNFVACGGLD 118 (343)
T ss_pred eeeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECC--CCCeEEecCcC
Confidence 4566778999999999999999999999999999999999999988887777 56678999999999 99999999999
Q ss_pred CcEEEeecccc--c--ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 128 GQVRHAQILER--G--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 128 g~i~vw~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
+...||++.+. + ....+.+.+|++.+.++.|-+|+ .|++++.|.+..+||+++++....+.. |.
T Consensus 119 N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~G----------H~ 186 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHG----------HT 186 (343)
T ss_pred ceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecC----------Cc
Confidence 99999999854 2 23345589999999999999976 489999999999999999998888864 66
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 282 (458)
+.|.+++++|.+++.+++|+-|+..++||+|.+.. ...+.+|+..|+++.|.|+|.-+++|+++
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c---------------~qtF~ghesDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC---------------VQTFEGHESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcce---------------eEeecccccccceEEEccCCCeeeecCCCc
Confidence 68999999995589999999999999999999853 34566789999999999999999999976
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
+.++||++.. +.+..+........|++++| |..|++|++|.
T Consensus 252 tcRlyDlRaD--------------------------------------~~~a~ys~~~~~~gitSv~F-S~SGRlLfagy 292 (343)
T KOG0286|consen 252 TCRLYDLRAD--------------------------------------QELAVYSHDSIICGITSVAF-SKSGRLLFAGY 292 (343)
T ss_pred eeEEEeecCC--------------------------------------cEEeeeccCcccCCceeEEE-cccccEEEeee
Confidence 7999999984 33344443333335899999 99999999999
Q ss_pred CCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 363 DCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 363 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
.|.++.+||.-.++.+..|.+|.+.|+++..+|||..++||+.|.++|||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999999999999999999999999999995
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-47 Score=287.51 Aligned_cols=295 Identities=15% Similarity=0.231 Sum_probs=255.5
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v 153 (458)
-+|+++|.|.+|++|...+|.+..++ .-....|+.+...| +++.||+++. ..|++||++++...+...+.+|+..|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCce
Confidence 47999999999999999999999988 45567899999999 9999999886 58999999998886777799999999
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
+++.|..+| +.+++|++||+++|||++...+...+. +..+|+++..+|. ...|++|..+|.|++||+
T Consensus 87 taVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpn-QteLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 87 TAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPN-QTELISGDQSGNIRVWDL 153 (311)
T ss_pred EEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCC-cceEEeecCCCcEEEEEc
Confidence 999999999 799999999999999999987777666 5568999999997 678999999999999999
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
.+... ...+..+....|.++...|||++++.+. .|+.++|++.+.....+
T Consensus 154 ~~~~c--------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 154 GENSC--------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cCCcc--------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc---------------
Confidence 98753 3445555678999999999999999887 56899999987433222
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEE
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCI 391 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~ 391 (458)
..++.+++.|... +..+.+ |||+++||+++.|.+++||+.++. +....+++|+..+..+
T Consensus 205 -----------------l~P~~k~~ah~~~--il~C~l-SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 205 -----------------LEPVHKFQAHNGH--ILRCLL-SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC 264 (311)
T ss_pred -----------------ceEhhheecccce--EEEEEE-CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee
Confidence 4567778888885 788887 999999999999999999999887 6677889999999999
Q ss_pred EecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEE
Q 012712 392 EPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIY 434 (458)
Q Consensus 392 ~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~ 434 (458)
+||.||+||+||+.|+.+++|++..++.. ...+|.....+++.
T Consensus 265 ~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 265 AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999998755 66777766555553
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-47 Score=329.23 Aligned_cols=414 Identities=18% Similarity=0.210 Sum_probs=317.8
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEecCCCEEEEec
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~ 80 (458)
+.....||+.+|++++..+.+++|++.+|++++. ++. |++||.-++|+|.|..|++|+
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irs---------------------wKa~He~Pvi~ma~~~~g~LlAtgg 124 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRS---------------------WKAIHEAPVITMAFDPTGTLLATGG 124 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHh---------------------HhhccCCCeEEEEEcCCCceEEecc
Confidence 4556789999999999999999999999988744 666 999999999999999999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.|+.++|||+..+.+.+.+ .+|.+.|.++.|.|......|++|..|+.+++||+.+... ....+..|.+.|++++|.+
T Consensus 125 aD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl~~~~~H~S~vtsL~~~~ 202 (775)
T KOG0319|consen 125 ADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CLHTMILHKSAVTSLAFSE 202 (775)
T ss_pred ccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HHHHHHhhhhheeeeeecc
Confidence 9999999999999999998 8999999999999944455689999999999999986655 2234788999999999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC--C--CcEEEEecCCCeEEEEecCCC
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR--N--ANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~--~~~l~~~~~dg~i~i~d~~~~ 236 (458)
++ ..+++++.|..+.+||+.+-+....+...+ .+.++.+-++ + +.++++++.+|.+++||..+.
T Consensus 203 d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye-----------~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 203 DS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYE-----------SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred CC-ceEEEeccCcEEEEeehhhhhhhheechhh-----------heeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 98 678999999999999997766655554321 3445555443 1 358889999999999998766
Q ss_pred ccCCCccCCC------------------------------------------------------------------CCCC
Q 012712 237 KWDGSTDFGQ------------------------------------------------------------------PADY 250 (458)
Q Consensus 237 ~~~~~~~~~~------------------------------------------------------------------~~~~ 250 (458)
+......... .+..
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence 5332111000 0000
Q ss_pred c----CCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCC----CCCCCCccccccccccCCCCcc-cc
Q 012712 251 F----CPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPN----PPPSSPVSTRSEASEMGSDHTS-AA 320 (458)
Q Consensus 251 ~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 320 (458)
+ ....+..+|...|.++....+|-+|++++.| ++++|.++++.... ...++......... +..+.. ++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~--~~~~asffv 428 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG--SKLGASFFV 428 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee--cccCccEEE
Confidence 0 0011455677788888866778899999955 89999884433221 12333333332222 111111 11
Q ss_pred CCCCCCc----------cc-----ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC
Q 012712 321 SPSTANT----------DV-----RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR 385 (458)
Q Consensus 321 ~~~~~~~----------~~-----~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 385 (458)
..+.+.. .. .........|.. .|++++. +|+.+++|+|+.|.+.+||+++....+.++.+|.
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK--dIN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK--DINCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcc--cccceEe-cCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 1111110 11 111112335555 4999998 9999999999999999999999999999999999
Q ss_pred ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
..|.++.|+|..+.+||+|.|++|+||.+++..+. ++.+|...|..+.|-.+|+.|++++.||-|++|+.
T Consensus 506 RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 506 RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred cceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 99999999999999999999999999999999887 67789999999999999999999999999999986
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-45 Score=304.44 Aligned_cols=379 Identities=13% Similarity=0.244 Sum_probs=293.9
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
+.++.|+|||.++|+.+.||.|.|||=.+|+.+.. +..-.+|++.|.+++|+||++.++|++
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~------------------l~~~~aHkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE------------------LEDSDAHKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE------------------ecCCCCccccEEEEEECCCCceEEEec
Confidence 35788999999999999999999999999998744 111238999999999999999999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCC--cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEE
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHN--DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
.|.+++|||+.+++++.++..+.+ .....+.| ....|++.+.+|.|.+++......+.. +.+|...|+++..
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW----qkd~lItVSl~G~in~ln~~d~~~~~~--i~GHnK~ITaLtv 328 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW----QKDHLITVSLSGTINYLNPSDPSVLKV--ISGHNKSITALTV 328 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEE----eCCeEEEEEcCcEEEEecccCCChhhe--ecccccceeEEEE
Confidence 999999999999999888855443 34445556 456899999999999999988885444 8999999999999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
+|++ ..|++|+.||.|.-|+..++..-+... ..|...|.+++-+.. ..+++.+.|.++++.++.....
T Consensus 329 ~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g---------~~h~nqI~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 329 SPDG-KTIYSGSYDGHINSWDSGSGTSDRLAG---------KGHTNQIKGMAASES--GELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred cCCC-CEEEeeccCceEEEEecCCcccccccc---------ccccceEEEEeecCC--CcEEEEecCCeEEEEecccCcc
Confidence 9999 789999999999999999887654431 115557899988764 4677888999999998865443
Q ss_pred CCCc--cCCC-CCC--CcCC-----------Ccccc--------ccccceeEEEeCCCCcEEEEecC-CcEEEEEccCCC
Q 012712 239 DGST--DFGQ-PAD--YFCP-----------PNLIG--------DEQVGITGLAFSDQSELLVSYND-EFIYLFTQDMGL 293 (458)
Q Consensus 239 ~~~~--~~~~-~~~--~~~~-----------~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~ 293 (458)
.... .++. |.- .... ..++. .-.....+++++|++..++.|++ +++++|.+....
T Consensus 397 t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 397 TKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred cccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 3221 1110 000 0000 00000 11234567888899888888884 478999887642
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
. ........|..+ ++.++| |||+.|||++...+.+.+||+.
T Consensus 477 l------------------------------------~ee~~~~~h~a~--iT~vay-Spd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 477 L------------------------------------KEEAKLLEHRAA--ITDVAY-SPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred c------------------------------------cceeeeecccCC--ceEEEE-CCCCcEEEEeccCCcEEEEEcc
Confidence 1 223345566665 899998 9999999999999999999999
Q ss_pred CCeEEE-EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCce
Q 012712 374 GGELIR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSI 450 (458)
Q Consensus 374 ~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i 450 (458)
+.+... .+..|...|.+++|+|+..++|||+.|..|.||+++..... ....|...|+.+.|--+ ..+++.+.|..|
T Consensus 518 s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~i 596 (603)
T KOG0318|consen 518 SREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANI 596 (603)
T ss_pred cCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCccee
Confidence 887643 34559999999999999999999999999999999876443 34567778999999855 555688999999
Q ss_pred EEEEE
Q 012712 451 LLFEW 455 (458)
Q Consensus 451 ~~w~~ 455 (458)
++|..
T Consensus 597 K~W~v 601 (603)
T KOG0318|consen 597 KVWNV 601 (603)
T ss_pred EEecc
Confidence 99985
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-46 Score=322.29 Aligned_cols=395 Identities=17% Similarity=0.222 Sum_probs=326.9
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
+-+|+..+||.|..||.|+||+..++..+ -++.||+.+|+++.|...|..||+||.|+.
T Consensus 72 ~~~~d~l~lAVGYaDGsVqif~~~s~~~~---------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~ 130 (888)
T KOG0306|consen 72 RSSDDILLLAVGYADGSVQIFSLESEEIL---------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTD 130 (888)
T ss_pred eccCCcceEEEEecCceEEeeccCCCcee---------------------eeecccccceEEEEEcccCceEeecCCCcc
Confidence 44678888999999999999999976544 468999999999999999999999999999
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---------------------
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET--------------------- 143 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~--------------------- 143 (458)
|.+||+-......++ .+|...|+..-|.. +.+.+++.+.|+.|++||+.+..+..+
T Consensus 131 IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~ 207 (888)
T KOG0306|consen 131 IIVWDLVGEEGLFRL-RGHKDSITQALFLN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTA 207 (888)
T ss_pred EEEEEeccceeeEEe-ecchHHHhHHhccC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEE
Confidence 999999877776776 79999999888887 788888888888888888866543200
Q ss_pred --------------------------------------------------------------------------------
Q 012712 144 -------------------------------------------------------------------------------- 143 (458)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (458)
T Consensus 208 ~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 208 GTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred ecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------------------------------------------------e
Q 012712 144 -------------------------------------------------------------------------------K 144 (458)
Q Consensus 144 -------------------------------------------------------------------------------~ 144 (458)
.
T Consensus 288 k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i 367 (888)
T KOG0306|consen 288 KRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI 367 (888)
T ss_pred HHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee
Confidence 1
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
.+.+|...|.+++++.+. .+++++ ..+.+++|+..+.+++.++.+ ..+.+..|-|. ++++++|..
T Consensus 368 ~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~------------~y~l~~~Fvpg-d~~Iv~G~k 432 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITC------------GYILASKFVPG-DRYIVLGTK 432 (888)
T ss_pred eeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEecc------------ccEEEEEecCC-CceEEEecc
Confidence 112377888999999886 444444 457899999999999988864 25789999995 799999999
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCC-----CCCC
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLG-----PNPP 298 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~-----~~~~ 298 (458)
.|.+.+||+.+..+. .....|.+.|..++.+||++.+++++.| +|++||..-... ...+
T Consensus 433 ~Gel~vfdlaS~~l~---------------Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~l 497 (888)
T KOG0306|consen 433 NGELQVFDLASASLV---------------ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVL 497 (888)
T ss_pred CCceEEEEeehhhhh---------------hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceee
Confidence 999999999987643 3344689999999999999999999955 799999754322 0000
Q ss_pred -----CCCCccccccccccCCCCccccCCCCCCccc------ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 299 -----PSSPVSTRSEASEMGSDHTSAASPSTANTDV------RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 299 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
..-..........++|+++.+++...+.... .+..-.+.||.-+ |.++.. |||++.+++|+.|.+|
T Consensus 498 sl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP--V~smDI-S~DSklivTgSADKnV 574 (888)
T KOG0306|consen 498 SLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNV 574 (888)
T ss_pred eeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc--eeEEec-cCCcCeEEeccCCCce
Confidence 0111122344567899999999888776543 4555677899986 899998 9999999999999999
Q ss_pred EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-cccccccccEEEEEEecCCcEEEeeec
Q 012712 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-ATLPTNIEQVCFSIYSADYWWSKSQNF 446 (458)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~s~~~ 446 (458)
++|-++-|.+-+.+-+|...|.++.|-|+..++.++|.|+.|+-||-+.-+. ..+.+|...|++++.+|+|.++++++.
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 9999999999999999999999999999999999999999999999887655 488999999999999999999999999
Q ss_pred CCceEEEEEe
Q 012712 447 SCSILLFEWL 456 (458)
Q Consensus 447 d~~i~~w~~~ 456 (458)
|.+|++|+-.
T Consensus 655 D~sIRlwE~t 664 (888)
T KOG0306|consen 655 DKSIRLWERT 664 (888)
T ss_pred CceeEeeecc
Confidence 9999999864
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.3e-45 Score=313.55 Aligned_cols=408 Identities=14% Similarity=0.184 Sum_probs=317.8
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.|||+|+++|.|. ...+.||... |.... ....+.+.+++.+|-..|.++.|+.|.++|++|+.|
T Consensus 101 ~i~fSPng~~fav~~-gn~lqiw~~P-~~~~~------------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD 166 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGC-GNLLQIWHAP-GEIKN------------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD 166 (893)
T ss_pred eEEECCCCcEEEEEe-cceeEEEecC-cchhc------------ccCcceEeeeecCCccceeEEEeccCCceEEecccc
Confidence 456999999999988 6789999987 32221 112346678899999999999999999999999999
Q ss_pred CeEEEEECCCcceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-----------------------c
Q 012712 83 RRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-----------------------R 138 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-----------------------~ 138 (458)
..+++|+++..+... ..+.+|...|.+.-|.. +...+++.+.||.+.+|.... +
T Consensus 167 ~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~ 244 (893)
T KOG0291|consen 167 LSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDG 244 (893)
T ss_pred ceEEEEEeccccccceEeccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccc
Confidence 999999998766522 23489999999999999 999999999999999998861 1
Q ss_pred cc---------eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 139 GG---------VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 139 ~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
+. .....+......+++.+|++.. ++|+++-..|...+|.+..-.++..+.. ...+|..+
T Consensus 245 Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSi----------s~~~I~t~ 313 (893)
T KOG0291|consen 245 EEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSI----------SDQKILTV 313 (893)
T ss_pred hhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeec----------ccceeeEE
Confidence 11 0111223334789999999977 8999999999999999998888877765 33479999
Q ss_pred EECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712 210 AIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF 287 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~ 287 (458)
+|+.. |.+++.|+.. |.+-+|+.++.... ...++|...+++++++|||+++|+|++| +|++|
T Consensus 314 ~~N~t-GDWiA~g~~klgQLlVweWqsEsYV---------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 314 SFNST-GDWIAFGCSKLGQLLVWEWQSESYV---------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred Eeccc-CCEEEEcCCccceEEEEEeecccee---------------eeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 99987 6888888754 89999999876532 2234578899999999999999999955 89999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee---cCcc--ceeeeeEEEEecCCCcEEEEec
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY---KGHR--NCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
|...+.....+..+....... .+...+..+...+.+......-+..+ +... .+....+++. +|.|..+.+|+
T Consensus 378 n~~SgfC~vTFteHts~Vt~v--~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav-D~sGelV~AG~ 454 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAV--QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-DPSGELVCAGA 454 (893)
T ss_pred eccCceEEEEeccCCCceEEE--EEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE-cCCCCEEEeec
Confidence 999977766666555544333 34444455555555444433333222 2211 2233567776 88888888888
Q ss_pred CCC-eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccccccccEEEEEEecCCcE
Q 012712 363 DCG-RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLPTNIEQVCFSIYSADYWW 440 (458)
Q Consensus 363 ~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~ 440 (458)
.|. .|++|++++|+++..+.+|.++|.+++|+|++..||+++.|.+||+|++-.. .......+...+.+++|+|||+-
T Consensus 455 ~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e 534 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE 534 (893)
T ss_pred cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCe
Confidence 775 6888888999999999999999999999999999999999999999998654 33455566778999999999999
Q ss_pred EEeeecCCceEEEEEe
Q 012712 441 SKSQNFSCSILLFEWL 456 (458)
Q Consensus 441 l~s~~~d~~i~~w~~~ 456 (458)
||.++-||.|.+||..
T Consensus 535 laVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 535 LAVATLDGQITFFDIK 550 (893)
T ss_pred EEEEEecceEEEEEhh
Confidence 9999999999999964
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.6e-45 Score=274.20 Aligned_cols=297 Identities=16% Similarity=0.245 Sum_probs=251.7
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
.-+|++++.|.+||+|...+|.+.. +++...+.|+.+...||++.||+++. ..|++||
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~r---------------------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD 67 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSR---------------------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYD 67 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEE---------------------EEecCccceeeEEEcCCcchhhhccC-CeeEEEE
Confidence 3569999999999999999999884 47766789999999999999999887 5799999
Q ss_pred CCCcce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712 90 WKTERV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (458)
Q Consensus 90 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (458)
+.++.+ +..+ .+|+..|+++.|.. +|+.+++|++||+++|||++...... ...|..+|+++..+|+. ..|+
T Consensus 68 ~~S~np~Pv~t~-e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQ-teLi 140 (311)
T KOG0315|consen 68 LNSNNPNPVATF-EGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQ-TELI 140 (311)
T ss_pred ccCCCCCceeEE-eccCCceEEEEEee--cCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCc-ceEE
Confidence 988764 5666 79999999999999 99999999999999999999854433 44578999999999998 5789
Q ss_pred EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (458)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (458)
++..+|.|++||+.+..+...+... ....+.++...|| +.+++.+...|..++|++-.....
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe---------~~~~i~sl~v~~d-gsml~a~nnkG~cyvW~l~~~~~~-------- 202 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPE---------DDTSIQSLTVMPD-GSMLAAANNKGNCYVWRLLNHQTA-------- 202 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCC---------CCcceeeEEEcCC-CcEEEEecCCccEEEEEccCCCcc--------
Confidence 9999999999999988665444321 3347899999998 789999999999999999874422
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (458)
..+.|...+..|.+.+..+.+||++++||+++.+ +++||+.++-
T Consensus 203 -s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---------------------------------- 247 (311)
T KOG0315|consen 203 -SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---------------------------------- 247 (311)
T ss_pred -ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc----------------------------------
Confidence 2234556677789999999999999999999855 8999998863
Q ss_pred cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (458)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 394 (458)
.+....+.+|... +...+| |.||+||++|+.|+.+++|++..++.++...+|.....+++..
T Consensus 248 ---~kle~~l~gh~rW--vWdc~F-S~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 ---FKLELVLTGHQRW--VWDCAF-SADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ---eeeEEEeecCCce--EEeeee-ccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 2445677888874 899998 9999999999999999999999999999999998887777754
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-44 Score=273.47 Aligned_cols=292 Identities=16% Similarity=0.233 Sum_probs=239.9
Q ss_pred eeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCC-----cceeeeeccCCCcceeEEEEccCCCCeEEEEE
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT-----ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC 124 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~ 124 (458)
+.+..++++|++.|+.++..+. .+.|++++.|.++.+|++.. |..+..+ .+|...|..+..++ |+++.+++
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~--dg~~alS~ 81 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSS--DGNFALSA 81 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEcc--CCceEEec
Confidence 3455689999999999999987 47889999999999999854 4455666 89999999999999 99999999
Q ss_pred cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (458)
+.|+++++||+.+++.... +.+|...|.+++|+|++ ..+++|+.|.+|++||............ .+..
T Consensus 82 swD~~lrlWDl~~g~~t~~--f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~---------~~~~ 149 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRR--FVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHED---------SHRE 149 (315)
T ss_pred cccceEEEEEecCCcEEEE--EEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecC---------CCcC
Confidence 9999999999999866554 89999999999999999 6799999999999999876543322221 0245
Q ss_pred ceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 205 NLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 205 ~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
.|.|+.|+|.. .-+|++++.|++|++||+++.+.
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------------------------------- 184 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--------------------------------------------- 184 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch---------------------------------------------
Confidence 79999999973 46889999999999999987642
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
...+.+|... ++.+++ ||||..+++|+.
T Consensus 185 -------------------------------------------------~~~~~gh~~~--v~t~~v-SpDGslcasGgk 212 (315)
T KOG0279|consen 185 -------------------------------------------------RTTFIGHSGY--VNTVTV-SPDGSLCASGGK 212 (315)
T ss_pred -------------------------------------------------hhcccccccc--EEEEEE-CCCCCEEecCCC
Confidence 2233445553 788888 999999999999
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc-----cccc-----cccEEEEE
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT-----LPTN-----IEQVCFSI 433 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~-----~~~~-----~~~v~~~~ 433 (458)
||.+.+||++.++.+..+. |...|.+++|+|+.-.|+.+. +..|+|||++++..+. ..+. .....+++
T Consensus 213 dg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsla 290 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLA 290 (315)
T ss_pred CceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEE
Confidence 9999999999999988876 778999999999877776554 5569999999875531 1222 22367899
Q ss_pred EecCCcEEEeeecCCceEEEEEe
Q 012712 434 YSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 434 ~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
||+||..|++|-.|+.|++|+.-
T Consensus 291 ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 291 WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EcCCCcEEEeeecCCcEEEEEee
Confidence 99999999999999999999863
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.1e-44 Score=292.86 Aligned_cols=326 Identities=17% Similarity=0.229 Sum_probs=277.4
Q ss_pred eecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcc--ee--eee---------ccCCCcceeEEEEccCCCCeEEE
Q 012712 57 LDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTER--VK--LSF---------HSGHNDNVFQAKIMPFTDDRSIV 122 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~--~~--~~~---------~~~~~~~i~~~~~~~~~~~~~l~ 122 (458)
+..|+.+|.+.+|+|-.. .|++++.|...++|++.... .. ..+ .......|++++|+. +|..||
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~--~G~~La 251 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN--DGTLLA 251 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC--CCCeEE
Confidence 334999999999999765 89999999999999987511 10 111 012245799999999 999999
Q ss_pred EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
+|+.||.+++|+... ..... +..|.++|.++.|+..| .+|++++.|+++.+||..++...+.+..+.
T Consensus 252 tG~~~G~~riw~~~G-~l~~t--l~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s--------- 318 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDG-NLIST--LGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHS--------- 318 (524)
T ss_pred EeecCcEEEEEecCc-hhhhh--hhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeecc---------
Confidence 999999999999744 44444 78899999999999999 789999999999999999999888887532
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
.+-..+.|-.+ .-|++++.|+.|+++.+.... |...+.+|.+.|.++.|+|.|.+|+++++|
T Consensus 319 -~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~---------------P~~t~~GH~g~V~alk~n~tg~LLaS~SdD 380 (524)
T KOG0273|consen 319 -APALDVDWQSN--DEFATSSTDGCIHVCKVGEDR---------------PVKTFIGHHGEVNALKWNPTGSLLASCSDD 380 (524)
T ss_pred -CCccceEEecC--ceEeecCCCceEEEEEecCCC---------------cceeeecccCceEEEEECCCCceEEEecCC
Confidence 23356777654 689999999999999987654 345566699999999999999999999966
Q ss_pred -cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC------
Q 012712 283 -FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC------ 355 (458)
Q Consensus 283 -~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------ 355 (458)
+++||.+.. ......+.+|... |..+.| +|.|
T Consensus 381 ~TlkiWs~~~--------------------------------------~~~~~~l~~Hske--i~t~~w-sp~g~v~~n~ 419 (524)
T KOG0273|consen 381 GTLKIWSMGQ--------------------------------------SNSVHDLQAHSKE--IYTIKW-SPTGPVTSNP 419 (524)
T ss_pred CeeEeeecCC--------------------------------------Ccchhhhhhhccc--eeeEee-cCCCCccCCC
Confidence 899999876 3456677778764 778887 8865
Q ss_pred ---cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEE
Q 012712 356 ---EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFS 432 (458)
Q Consensus 356 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~ 432 (458)
..+++++.|++|++||+..+.++.+|..|..+|.+++|+|+|+++|+|+.||.|.||++.+++........+.|..+
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel 499 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFEL 499 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEecCCcEEEeeecCCceEEEEEe
Q 012712 433 IYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 433 ~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+|+.+|..|..+-.|+.+++-|+.
T Consensus 500 ~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998875
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-42 Score=299.78 Aligned_cols=379 Identities=18% Similarity=0.232 Sum_probs=303.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccc-------cccc---cccccceEE--e-ee-eeEeecCCCceEEEEE
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNF-------ALRR---RASEDLVLR--L-GI-YAKLDKHRGCVNTVSF 69 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~-------~~~~---~~~~~~~~~--~-~~-~~~~~~h~~~v~~~~~ 69 (458)
+||..+..-|+|-+.||.+.+|..... +....- .... ...++...+ + +. ..-+......|++.+|
T Consensus 195 cfF~~~~~~l~tvskdG~l~~W~~~~~-P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f 273 (893)
T KOG0291|consen 195 CFFGANSLDLYTVSKDGALFVWTCDLR-PPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF 273 (893)
T ss_pred EEeccCcceEEEEecCceEEEEEecCC-CcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec
Confidence 457777778999999999999998832 110000 0000 001111111 1 11 2223334478999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-CcEEEeecccccceeeeeccc
Q 012712 70 NTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGGVETKLLGK 148 (458)
Q Consensus 70 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~~~~~~~~~~~~~ 148 (458)
++.-+.||+|-..|...+|.+.....++.+ .-...+|..+.|+. .|++||.++.. |.+-||++.+...+.. .++
T Consensus 274 H~~t~~lvvgFssG~f~LyelP~f~lih~L-Sis~~~I~t~~~N~--tGDWiA~g~~klgQLlVweWqsEsYVlK--QQg 348 (893)
T KOG0291|consen 274 HKGTNLLVVGFSSGEFGLYELPDFNLIHSL-SISDQKILTVSFNS--TGDWIAFGCSKLGQLLVWEWQSESYVLK--QQG 348 (893)
T ss_pred cCCceEEEEEecCCeeEEEecCCceEEEEe-ecccceeeEEEecc--cCCEEEEcCCccceEEEEEeeccceeee--ccc
Confidence 999999999999999999999999988887 45567899999998 89999998864 8999999988777665 789
Q ss_pred cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (458)
|...+++++++||| +++++|+.||.|++||...+-+..++.. |...|+.+.|+.. ++.+++.+.||+|
T Consensus 349 H~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts~Vt~v~f~~~-g~~llssSLDGtV 416 (893)
T KOG0291|consen 349 HSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTSGVTAVQFTAR-GNVLLSSSLDGTV 416 (893)
T ss_pred cccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEecc----------CCCceEEEEEEec-CCEEEEeecCCeE
Confidence 99999999999999 7999999999999999999999888864 5668999999997 7999999999999
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--cEEEEEccCCCCCCCCCCCCcccc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTR 306 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~ 306 (458)
+.||+...+.- ..+..+......+++..|.|.++++|+.+ .|++|++.+
T Consensus 417 RAwDlkRYrNf--------------RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--------------- 467 (893)
T KOG0291|consen 417 RAWDLKRYRNF--------------RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--------------- 467 (893)
T ss_pred Eeeeeccccee--------------eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---------------
Confidence 99999876632 22333334567899999999999999976 599999998
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecCC
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADR 385 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 385 (458)
++.+..+.||+++ |.+++| +|++..|++++.|.+|++||+-.. ..+.+++ +.
T Consensus 468 -----------------------GqllDiLsGHEgP--Vs~l~f-~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~ 520 (893)
T KOG0291|consen 468 -----------------------GQLLDILSGHEGP--VSGLSF-SPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IR 520 (893)
T ss_pred -----------------------CeeeehhcCCCCc--ceeeEE-ccccCeEEeccccceEEEEEeeccCceeeeEe-ec
Confidence 5678889999997 899998 999999999999999999998654 3445554 56
Q ss_pred ceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-----------------ccc----cccccEEEEEEecCCcEEEee
Q 012712 386 HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-----------------TLP----TNIEQVCFSIYSADYWWSKSQ 444 (458)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-----------------~~~----~~~~~v~~~~~s~d~~~l~s~ 444 (458)
..+..++|+|||+.||++..||.|.+||+..+... .+. ......+.+++|+||..+++|
T Consensus 521 sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 521 SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence 67999999999999999999999999998754222 001 111238899999999999999
Q ss_pred ecCCceEEEEEe
Q 012712 445 NFSCSILLFEWL 456 (458)
Q Consensus 445 ~~d~~i~~w~~~ 456 (458)
+..+.|++|+.-
T Consensus 601 G~sn~iCiY~v~ 612 (893)
T KOG0291|consen 601 GESNSICIYDVP 612 (893)
T ss_pred CCcccEEEEECc
Confidence 999999999853
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-43 Score=267.73 Aligned_cols=286 Identities=18% Similarity=0.210 Sum_probs=234.3
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
+...|++++.|.++.+|++..... ..-.+++.++||...|..+..++||++.++++.|+++++|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~----------------~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW 90 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDI----------------KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW 90 (315)
T ss_pred CCceEEEcccceEEEEEEeccCcc----------------ccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence 456799999999999999984311 1224567899999999999999999999999999999999
Q ss_pred ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEE
Q 012712 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFY 167 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~ 167 (458)
|+.+++..++| .+|...|.+++|+| |.+.|++|+.|.+|++|++..... .+..-..+.+.|.|+.|+|+. ..+++
T Consensus 91 Dl~~g~~t~~f-~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 91 DLATGESTRRF-VGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EecCCcEEEEE-EecCCceEEEEecC--CCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 99999888888 79999999999999 999999999999999999865443 332233347899999999984 36899
Q ss_pred EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (458)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (458)
+++.|++|++||+++.+....+.. +...++.++++|| |.++++|+.||.+.+||++.++...
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~g----------h~~~v~t~~vSpD-GslcasGgkdg~~~LwdL~~~k~ly------- 228 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIG----------HSGYVNTVTVSPD-GSLCASGGKDGEAMLWDLNEGKNLY------- 228 (315)
T ss_pred EccCCceEEEEccCCcchhhcccc----------ccccEEEEEECCC-CCEEecCCCCceEEEEEccCCceeE-------
Confidence 999999999999999887776653 5567999999998 7899999999999999999887422
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
..++...|.+++|+|+.-.|+.+.+..|+|||+.++.....+......
T Consensus 229 ---------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g----------------------- 276 (315)
T KOG0279|consen 229 ---------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIG----------------------- 276 (315)
T ss_pred ---------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccc-----------------------
Confidence 223567899999999999999999999999999987655543311110
Q ss_pred ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
. ..........+++| ++||+.|++|-.|+.|++|.+.
T Consensus 277 -------~-s~~~~~~~clslaw-s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 -------P-SSKAGDPICLSLAW-SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -------c-ccccCCcEEEEEEE-cCCCcEEEeeecCCcEEEEEee
Confidence 0 01111224778898 9999999999999999999874
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-43 Score=269.75 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=250.5
Q ss_pred eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712 98 SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177 (458)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 177 (458)
+.+++|.+.|+++.|++ |.++|++++.||.+.|||.-+...... ++-....|..++|+|.+ +++++|+.|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~TtnK~ha--ipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFTTNKVHA--IPLPSSWVMTCAYSPSG-NFVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecC--CcCeEEeeccCCeEEEEEcccccceeE--EecCceeEEEEEECCCC-CeEEecCcCceeEE
Confidence 44589999999999999 999999999999999999988776655 55567899999999999 78999999999999
Q ss_pred EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
|++.+.+......... ...+ |.+.+.|+.|-+| ..|++++.|.+..+||+++++. ...+
T Consensus 124 y~ls~~d~~g~~~v~r--~l~g--HtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~---------------~~~f 182 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSR--ELAG--HTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQ---------------TQVF 182 (343)
T ss_pred Eecccccccccceeee--eecC--ccceeEEEEEcCC--CceEecCCCceEEEEEcccceE---------------EEEe
Confidence 9998663221111110 1122 5668999999985 5899999999999999999874 3456
Q ss_pred cccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712 258 GDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (458)
Q Consensus 258 ~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (458)
.+|.+.|.++.++| +++.+++|+ |...++||++. ....+.
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--------------------------------------~~c~qt 224 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--------------------------------------GQCVQT 224 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccC--------------------------------------cceeEe
Confidence 68999999999999 899999988 55899999998 567899
Q ss_pred ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
|.+|+.. |+++.| .|+|.-+++|++|++.++||++..+.+..+... ..+|++++||..|++|.+|..|.++.+||
T Consensus 225 F~ghesD--INsv~f-fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 225 FEGHESD--INSVRF-FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred ecccccc--cceEEE-ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 9999985 999999 899999999999999999999999988888632 34799999999999999999999999999
Q ss_pred CCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 414 PNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 414 ~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.-.++.. .+.+|..+|.++..+|||.-++||+.|..++||.
T Consensus 302 tlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 302 TLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 8887766 7889999999999999999999999999999994
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6e-43 Score=270.03 Aligned_cols=295 Identities=20% Similarity=0.354 Sum_probs=254.8
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
+...+.+|++.|..+.|+|+|.+||||+.|..|.+|++.....-.-.+++|.+.|..+.|.+ |++.|++++.|.+++.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCGTDKTVRG 116 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEecCCceEEE
Confidence 34457899999999999999999999999999999997554443444479999999999999 9999999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
||+++++.... ++.|..-++++.-+.-|+.++.+++.|+++++||+++...++.+. ...+++++.|.
T Consensus 117 wD~~tG~~~rk--~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-----------~kyqltAv~f~ 183 (338)
T KOG0265|consen 117 WDAETGKRIRK--HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-----------NKYQLTAVGFK 183 (338)
T ss_pred Eecccceeeeh--hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----------cceeEEEEEec
Confidence 99999998876 889999999999777788899999999999999999999888875 34468999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
.+ +..+.+|+-|+.|++||++.+.. .....+|..+|+.+..+|+|.++.+-+ +.++++||++.
T Consensus 184 d~-s~qv~sggIdn~ikvWd~r~~d~---------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 184 DT-SDQVISGGIDNDIKVWDLRKNDG---------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cc-ccceeeccccCceeeeccccCcc---------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 87 68999999999999999998763 446778899999999999999999988 55899999875
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce--eeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC--VTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
-... .+++..+.+|... .....++| +|++..+.+|+.|..+++
T Consensus 248 ~~p~----------------------------------~R~v~if~g~~hnfeknlL~csw-sp~~~~i~ags~dr~vyv 292 (338)
T KOG0265|consen 248 FAPS----------------------------------QRCVKIFQGHIHNFEKNLLKCSW-SPNGTKITAGSADRFVYV 292 (338)
T ss_pred cCCC----------------------------------CceEEEeecchhhhhhhcceeec-cCCCCccccccccceEEE
Confidence 2211 2346666665543 23566777 999999999999999999
Q ss_pred EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
||......+..+.+|.+.|++++|+|...+|.+++.|++|.+=.
T Consensus 293 wd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 293 WDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred eecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99988899999999999999999999999999999999998744
No 20
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1e-42 Score=275.83 Aligned_cols=339 Identities=15% Similarity=0.162 Sum_probs=274.7
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
-+..|..|+++|.+++.+|+.++++||+.|..-.||+..+++....+ .+|+..|+++.|+. +|.+||||+.+|.|+|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSH--DGTLLATGDMSGKVLV 132 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEcc--CceEEEecCCCccEEE
Confidence 34678999999999999999999999999999999999999977766 89999999999999 9999999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
|+..++..... +...-..+.-+.|+|.+ .+|++|+.||.+.+|.+..+...+.+.. +..++++-.|.
T Consensus 133 ~~~stg~~~~~--~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~G----------h~~~ct~G~f~ 199 (399)
T KOG0296|consen 133 FKVSTGGEQWK--LDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSG----------HNSPCTCGEFI 199 (399)
T ss_pred EEcccCceEEE--eecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecC----------CCCCccccccc
Confidence 99998877655 44556778889999988 7899999999999999998766666653 55578999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDM 291 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~ 291 (458)
|+ |+.++++..||+|++|++.+++.... ..........++.++..+..++.|+. +.+++-+..+
T Consensus 200 pd-GKr~~tgy~dgti~~Wn~ktg~p~~~--------------~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 200 PD-GKRILTGYDDGTIIVWNPKTGQPLHK--------------ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred CC-CceEEEEecCceEEEEecCCCceeEE--------------ecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 98 79999999999999999999863321 12122345678888888888888874 4677777666
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
++......+ ..+.....+... ..|..+.+ +..-.+.|+|+-||+|.||
T Consensus 265 gKVv~~~n~------------------------------~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iy 313 (399)
T KOG0296|consen 265 GKVVNCNNG------------------------------TVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIY 313 (399)
T ss_pred ceEEEecCC------------------------------CCccccccchhhhhhhhhccc-ccccchhhcccccceEEEE
Confidence 543322211 000111111111 12444444 6667789999999999999
Q ss_pred EecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCc
Q 012712 371 KKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
|+...++.... .|..+|..+.|-+ ..+|++++.+|.|+.||..+|+++ ...+|...|.+++.+|+.++++|++.|++
T Consensus 314 D~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 314 DLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred ecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCe
Confidence 99776655544 4888999999998 789999999999999999999877 78999999999999999999999999999
Q ss_pred eEEEEE
Q 012712 450 ILLFEW 455 (458)
Q Consensus 450 i~~w~~ 455 (458)
.+||+.
T Consensus 392 a~VF~v 397 (399)
T KOG0296|consen 392 ALVFEV 397 (399)
T ss_pred EEEEec
Confidence 999985
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-43 Score=278.06 Aligned_cols=306 Identities=16% Similarity=0.241 Sum_probs=265.7
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
+..+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+ ++|...+..++|+. .|.+|++++.|=.
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a--~Gk~l~tcSsDl~ 173 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDA--SGKYLATCSSDLS 173 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEec--CccEEEecCCccc
Confidence 44677888999999999999999999999999999999999999996555 89999999999999 9999999999999
Q ss_pred EEEeecccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 130 VRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 130 i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
+++||..+. +++ +.+.+|...|.++.|-|.| ..+++++.|.+|+.|++.++.++..+.. +...|..
T Consensus 174 ~~LWd~~~~~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~----------h~ewvr~ 240 (406)
T KOG0295|consen 174 AKLWDFDTFFRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPG----------HSEWVRM 240 (406)
T ss_pred hhheeHHHHHHHH--HHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccC----------chHhEEE
Confidence 999999774 333 3377899999999999999 7899999999999999999999998875 3347889
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
+..+.| +.++++++.|.++++|-+.+.+. ......|+.+|.+++|-|...+=
T Consensus 241 v~v~~D-Gti~As~s~dqtl~vW~~~t~~~---------------k~~lR~hEh~vEci~wap~~~~~------------ 292 (406)
T KOG0295|consen 241 VRVNQD-GTIIASCSNDQTLRVWVVATKQC---------------KAELREHEHPVECIAWAPESSYP------------ 292 (406)
T ss_pred EEecCC-eeEEEecCCCceEEEEEeccchh---------------hhhhhccccceEEEEecccccCc------------
Confidence 999998 79999999999999999988742 33556688899999998864210
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
. |....--...++++.+++.|++|+
T Consensus 293 ----------------------------------------------~---------i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 293 ----------------------------------------------S---------ISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred ----------------------------------------------c---------hhhccCCCCCccEEEeecccceEE
Confidence 0 000000012467999999999999
Q ss_pred EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecC
Q 012712 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d 447 (458)
+||+.++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||+.+.++. .+..|..-++++.|..+-.+++||+.|
T Consensus 318 ~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 318 IWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred EEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence 9999999999999999999999999999999999999999999999998776 566777779999999999999999999
Q ss_pred CceEEEE
Q 012712 448 CSILLFE 454 (458)
Q Consensus 448 ~~i~~w~ 454 (458)
..+++|+
T Consensus 398 qt~KvwE 404 (406)
T KOG0295|consen 398 QTVKVWE 404 (406)
T ss_pred ceeeeee
Confidence 9999997
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-43 Score=278.00 Aligned_cols=291 Identities=20% Similarity=0.317 Sum_probs=253.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
+.|.|+..+++++++|++|++||..+|++.. .++||.+.|..++|+..|++||+++.|-
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---------------------~LrGHt~sv~di~~~a~Gk~l~tcSsDl 172 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELER---------------------SLRGHTDSVFDISFDASGKYLATCSSDL 172 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhh---------------------hhhccccceeEEEEecCccEEEecCCcc
Confidence 4578999999999999999999999999864 4999999999999999999999999998
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (458)
.+++||.++.......+.+|...|.+++|-| .|.+|++++.|.+|+.|++.++.++.+ +.+|...|..+..+.||
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P--~gd~ilS~srD~tik~We~~tg~cv~t--~~~h~ewvr~v~v~~DG- 247 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP--LGDHILSCSRDNTIKAWECDTGYCVKT--FPGHSEWVRMVRVNQDG- 247 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEe--cCCeeeecccccceeEEecccceeEEe--ccCchHhEEEEEecCCe-
Confidence 8999999874333334479999999999999 899999999999999999999998877 99999999999999999
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.++++++.|.++++|-+.++++...++. +..+|.+++|.|.. . +.... +. ++.
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~----------hEh~vEci~wap~~-~--~~~i~-------~a-t~~------ 300 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELRE----------HEHPVECIAWAPES-S--YPSIS-------EA-TGS------ 300 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhc----------cccceEEEEecccc-c--Ccchh-------hc-cCC------
Confidence 8999999999999999999988777764 44479999999862 1 11100 00 000
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
. ..++++.+++ |++|++||+.+
T Consensus 301 ------------------~--------~~~~~l~s~SrDktIk~wdv~t------------------------------- 323 (406)
T KOG0295|consen 301 ------------------T--------NGGQVLGSGSRDKTIKIWDVST------------------------------- 323 (406)
T ss_pred ------------------C--------CCccEEEeecccceEEEEeccC-------------------------------
Confidence 0 0456888888 44799999988
Q ss_pred CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEE
Q 012712 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLAS 402 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 402 (458)
..++.++.+|.+. |..++| +|.|+||+++.+|+++++||+++++++.++..|..-++++.|+.+..+++|
T Consensus 324 -------g~cL~tL~ghdnw--Vr~~af-~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 324 -------GMCLFTLVGHDNW--VRGVAF-SPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVT 393 (406)
T ss_pred -------CeEEEEEecccce--eeeeEE-cCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEe
Confidence 5678899999995 999999 999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcEEEecC
Q 012712 403 SGIESDIKILTP 414 (458)
Q Consensus 403 ~~~d~~i~iw~~ 414 (458)
|+-|.++++|..
T Consensus 394 GsVdqt~KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTVKVWEC 405 (406)
T ss_pred ccccceeeeeec
Confidence 999999999964
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=258.34 Aligned_cols=295 Identities=19% Similarity=0.216 Sum_probs=241.1
Q ss_pred eeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 126 (458)
+..++.+++|++.|..++|+|- |..||||+.|+.|++|+... -.+...+..+|+..|.+++|+| .|++|++++.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~g~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--HGRYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--CCcEEEEeec
Confidence 4566789999999999999998 88999999999999999884 3344445568999999999999 9999999999
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
|.++.||.-..++-.....+.+|..+|.+++|+++| ++|++++.|..|.+|.+..+.........+ . |...|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~-----~--HtqDV 153 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQ-----E--HTQDV 153 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeec-----c--ccccc
Confidence 999999998776655566699999999999999999 799999999999999988665444333322 2 44468
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (458)
..+.|+|. ..+|++++.|.+|++|+-... +.
T Consensus 154 K~V~WHPt-~dlL~S~SYDnTIk~~~~~~d------------------------------------dd------------ 184 (312)
T KOG0645|consen 154 KHVIWHPT-EDLLFSCSYDNTIKVYRDEDD------------------------------------DD------------ 184 (312)
T ss_pred cEEEEcCC-cceeEEeccCCeEEEEeecCC------------------------------------CC------------
Confidence 88999997 679999999999999976421 00
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~ 366 (458)
..+.+++.+|.+ +|.+++| ++.|..|+++++|++
T Consensus 185 -------------------------------------------W~c~~tl~g~~~--TVW~~~F-~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 185 -------------------------------------------WECVQTLDGHEN--TVWSLAF-DNIGSRLVSCSDDGT 218 (312)
T ss_pred -------------------------------------------eeEEEEecCccc--eEEEEEe-cCCCceEEEecCCcc
Confidence 234566777777 5999998 999999999999999
Q ss_pred EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc----c--c--cccccccccEEEEEEecC-
Q 012712 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA----D--R--ATLPTNIEQVCFSIYSAD- 437 (458)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~----~--~--~~~~~~~~~v~~~~~s~d- 437 (458)
++||...+. .-..|+..++.++|. ...||+++.|+.|+++.-... . . .....|...|+++.|.|.
T Consensus 219 v~Iw~~~~~----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 219 VSIWRLYTD----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred eEeeeeccC----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 999986521 112477899999997 568999999999999987643 1 1 133457778999999996
Q ss_pred CcEEEeeecCCceEEEEEe
Q 012712 438 YWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 438 ~~~l~s~~~d~~i~~w~~~ 456 (458)
...|++++.||.|++|++.
T Consensus 293 ~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCceeecCCCceEEEEEec
Confidence 5889999999999999975
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-44 Score=292.50 Aligned_cols=295 Identities=19% Similarity=0.288 Sum_probs=255.6
Q ss_pred eeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 52 GIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
+.++.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. ++++.++ .+|..+|.+++|++ +|..+++++.|+.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~--~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNN--CGTSFLSASFDRF 281 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccc--cCCeeeeeeccee
Confidence 67788999999999999999 889999999999999999976 6777777 89999999999999 9999999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
|++||+++++...... ....++++.|+|+++++|++|+.|+.|+.||+++++.++.+.. +-+.|..+
T Consensus 282 lKlwDtETG~~~~~f~---~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------hLg~i~~i 348 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH---LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------HLGAILDI 348 (503)
T ss_pred eeeeccccceEEEEEe---cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------hhhheeee
Confidence 9999999999877632 3356789999999989999999999999999999998887753 45579999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
.|-++ +..+++.+.|+.+++|+.+..-... .......-...++..+|++.++++-+ ++.|.+|.
T Consensus 349 ~F~~~-g~rFissSDdks~riWe~~~~v~ik--------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 349 TFVDE-GRRFISSSDDKSVRIWENRIPVPIK--------------NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred EEccC-CceEeeeccCccEEEEEcCCCccch--------------hhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 99997 7899999999999999998764322 12222344567899999999999988 55799998
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
+..... ....+.+.+|.....-..+.| ||||.+|++|+.||.+.
T Consensus 414 ~~~~~r-----------------------------------~nkkK~feGh~vaGys~~v~f-SpDG~~l~SGdsdG~v~ 457 (503)
T KOG0282|consen 414 TVPPFR-----------------------------------LNKKKRFEGHSVAGYSCQVDF-SPDGRTLCSGDSDGKVN 457 (503)
T ss_pred cccccc-----------------------------------cCHhhhhcceeccCceeeEEE-cCCCCeEEeecCCccEE
Confidence 654321 334567889988777788898 99999999999999999
Q ss_pred EEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEec
Q 012712 369 IWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILT 413 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~ 413 (458)
+||.++.+++..+++|.+++..+.|+|... .+||++.||.|++|+
T Consensus 458 ~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 458 FWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999754 799999999999996
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7e-42 Score=271.06 Aligned_cols=324 Identities=15% Similarity=0.198 Sum_probs=267.1
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
+.+|+.++++||+.|..-.+|++.+|..+ ..+.+|++.|+++.||.||.+||||+.+|.
T Consensus 71 sl~P~~~l~aTGGgDD~AflW~~~~ge~~---------------------~eltgHKDSVt~~~FshdgtlLATGdmsG~ 129 (399)
T KOG0296|consen 71 SLHPNNNLVATGGGDDLAFLWDISTGEFA---------------------GELTGHKDSVTCCSFSHDGTLLATGDMSGK 129 (399)
T ss_pred EeCCCCceEEecCCCceEEEEEccCCcce---------------------eEecCCCCceEEEEEccCceEEEecCCCcc
Confidence 35789999999999999999999999866 458999999999999999999999999999
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (458)
|+||+..++.....+. ..-+.|.=+.|+| .+..|+.|+.||.+.+|.+.++...+. +.+|+.++++=.|.|+| +
T Consensus 130 v~v~~~stg~~~~~~~-~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdG-K 203 (399)
T KOG0296|consen 130 VLVFKVSTGGEQWKLD-QEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDG-K 203 (399)
T ss_pred EEEEEcccCceEEEee-cccCceEEEEecc--cccEEEeecCCCcEEEEECCCcceeeE--ecCCCCCcccccccCCC-c
Confidence 9999999998877773 4556788899999 999999999999999999988654443 89999999999999999 6
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccC
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (458)
.++++..||+|++||+.++++...+.... .....++.++.. +..++.|..++.+++-+..+++......-
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~-~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLA-GSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccc---------cCcCCccccccc-cceeEeccCCccEEEEccccceEEEecCC
Confidence 89999999999999999998776654221 224578888886 78899999999999988888775443221
Q ss_pred CCCCCCcCCCccccccccceeEEEeCC---CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 245 GQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
. ...+...+...+.++.+.| .=.+.|+|+ +++|.|||+...
T Consensus 274 ~-------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~---------------------------- 318 (399)
T KOG0296|consen 274 T-------VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS---------------------------- 318 (399)
T ss_pred C-------CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----------------------------
Confidence 1 1222233344455555444 456778888 779999999863
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL 400 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 400 (458)
.++..-.|... |..+.| .+ ..+|++++.||.|+.||.++|+++.++.+|...|.+++.+|+.+++
T Consensus 319 -----------~~R~~c~he~~--V~~l~w-~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 319 -----------TLRHICEHEDG--VTKLKW-LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLV 383 (399)
T ss_pred -----------hhheeccCCCc--eEEEEE-cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEE
Confidence 22333345554 899998 66 6899999999999999999999999999999999999999999999
Q ss_pred EEeecCCcEEEecCC
Q 012712 401 ASSGIESDIKILTPN 415 (458)
Q Consensus 401 ~s~~~d~~i~iw~~~ 415 (458)
+|+|.|++.+|+++.
T Consensus 384 vT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 384 VTVSDDNTALVFEVP 398 (399)
T ss_pred EEecCCCeEEEEecC
Confidence 999999999999864
No 26
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-41 Score=292.44 Aligned_cols=400 Identities=16% Similarity=0.170 Sum_probs=302.6
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 91 (458)
+.++++.-..|.+||+.+|+..+..+ ...-...|+|++-+|+...||.|..||.|+||+..
T Consensus 35 r~va~~a~E~vn~WdlRtge~~~~l~-------------------~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~ 95 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGEIEKKLI-------------------LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLE 95 (888)
T ss_pred cEEEEeccccEeEEeeecchhhhhhh-------------------hhcccceEEEeeccCCcceEEEEecCceEEeeccC
Confidence 34444446679999999996664411 12234689999999999999999999999999999
Q ss_pred CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (458)
Q Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (458)
++.....+ .+|...|+.+.|.. .|..|++||.|+.|.+||+-....... +.+|.+.|+.+-|..+. .++++.+.
T Consensus 96 s~~~~~tf-ngHK~AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~r--L~GHkd~iT~~~F~~~~-~~lvS~sK 169 (888)
T KOG0306|consen 96 SEEILITF-NGHKAAVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFR--LRGHKDSITQALFLNGD-SFLVSVSK 169 (888)
T ss_pred CCceeeee-cccccceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEE--eecchHHHhHHhccCCC-eEEEEecc
Confidence 88877777 89999999999999 999999999999999999987666655 89999999999998866 78999999
Q ss_pred CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC------------
Q 012712 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD------------ 239 (458)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~------------ 239 (458)
|+.|++||+++..+..+... +...+.++++.+ +.+++++.|+.+++|++....-.
T Consensus 170 Ds~iK~WdL~tqhCf~Thvd----------~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~ 236 (888)
T KOG0306|consen 170 DSMIKFWDLETQHCFETHVD----------HRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR 236 (888)
T ss_pred CceEEEEecccceeeeEEec----------ccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence 99999999999998877654 555789999986 47888889999999998110000
Q ss_pred C---------Cc----------------------------------------------c-------C-------------
Q 012712 240 G---------ST----------------------------------------------D-------F------------- 244 (458)
Q Consensus 240 ~---------~~----------------------------------------------~-------~------------- 244 (458)
+ .. . .
T Consensus 237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 0 00 0 0
Q ss_pred ----------------CCC-----------------CCC-------cCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712 245 ----------------GQP-----------------ADY-------FCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (458)
Q Consensus 245 ----------------~~~-----------------~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i 284 (458)
..+ ... ........+|...|.+++++.+...+++++.+.+
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Si 396 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESI 396 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcE
Confidence 000 000 0000123567889999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCcccc------------------------------------------CC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA------------------------------------------SP 322 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~ 322 (458)
++|+..+.+....++.. ......|.|+...+. ..
T Consensus 397 kiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~ 472 (888)
T KOG0306|consen 397 KIWNRDTLKCIRTITCG----YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG 472 (888)
T ss_pred EEEEccCcceeEEeccc----cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe
Confidence 99999988766665532 222333333333332 22
Q ss_pred CCCCcccccCceeecC---cc-------------ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712 323 STANTDVRIAPQVYKG---HR-------------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH 386 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~---~~-------------~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (458)
+.+............. .. -...|.++.+ ||||++||.+--|+++++|-+.+.+..-.+.||.-
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL 551 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL 551 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE-cCCCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence 2222222111111111 00 0113667776 77777777777777777777777777778889999
Q ss_pred eeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 387 VVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
||.+|..|||+++++|||.|.+|+||-++-|.+. .+.+|...|.++.|-|+...+.+++.|+.|+-||
T Consensus 552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 9999999999999999999999999999999886 7889999999999999999999999999999996
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=279.20 Aligned_cols=297 Identities=22% Similarity=0.301 Sum_probs=246.5
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce---eeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV---KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
.+..+.+..|++.|.-+.||++|+||||++.|.+..+|++..... .+++ .+|..+|..+.|+| |.++|++|+.+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSP--DdryLlaCg~~ 290 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSP--DDRYLLACGFD 290 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECC--CCCeEEecCch
Confidence 356678899999999999999999999999999999998865443 3444 79999999999999 99999999999
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
..+.+||+.++...... -.++...+.+++|.||+ ..+++|+.|+.+..||+.... ....... ....|.
T Consensus 291 e~~~lwDv~tgd~~~~y-~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~-~~~W~gv---------r~~~v~ 358 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLY-PSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNI-LGNWEGV---------RDPKVH 358 (519)
T ss_pred HheeeccCCcchhhhhc-ccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcch-hhccccc---------ccceeE
Confidence 99999999999876543 23366889999999999 679999999999999987654 2222211 223589
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYL 286 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i 286 (458)
+++..+| +.++++.+.|..|++|+..+....+ ......+|+++..|.+++++.+.- +..+.+
T Consensus 359 dlait~D-gk~vl~v~~d~~i~l~~~e~~~dr~----------------lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 359 DLAITYD-GKYVLLVTVDKKIRLYNREARVDRG----------------LISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred EEEEcCC-CcEEEEEecccceeeechhhhhhhc----------------cccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 9999998 6788888899999999988754211 112356899999999999877766 558999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR 366 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~ 366 (458)
||+.. ...++.+.||.....+..-+|--.+..++++|++|+.
T Consensus 422 WDl~e--------------------------------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 422 WDLEE--------------------------------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred eecch--------------------------------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCCce
Confidence 99986 5667888898877777777773345589999999999
Q ss_pred EEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcc
Q 012712 367 IFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAA 417 (458)
Q Consensus 367 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~ 417 (458)
|+||+..+++++.++.||...|++++|+|... ++|++|+||+||||.+...
T Consensus 464 vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999999665 8999999999999987643
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-43 Score=282.37 Aligned_cols=280 Identities=18% Similarity=0.283 Sum_probs=240.7
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
-+.+|..+.|.|+|+.|++|+..|.+.+|+...... ..++..|..+|.++.|++ ++.++++|+.+|.|++|+.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-EtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-ETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeH-HHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEecccchhh
Confidence 356899999999999999999999999999754443 334478999999999999 99999999999999999986554
Q ss_pred ceeeeeccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 140 GVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 140 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
... +.. |...|++++|+|+. ..|++++.||+|+|||....+....+.. +.-.|.+++|+|. ..+
T Consensus 172 Vk~---~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksvdWHP~-kgL 236 (464)
T KOG0284|consen 172 VKI---IQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSVDWHPT-KGL 236 (464)
T ss_pred hHH---hhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheecc----------CCCCcceeccCCc-cce
Confidence 332 444 45899999999987 6799999999999999998887777653 4447899999998 679
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~ 298 (458)
+++|+.|..|++||.++++
T Consensus 237 iasgskDnlVKlWDprSg~------------------------------------------------------------- 255 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGS------------------------------------------------------------- 255 (464)
T ss_pred eEEccCCceeEeecCCCcc-------------------------------------------------------------
Confidence 9999999999999998764
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
++..+.+|.+ .|..+.| .|++++|++++.|..++++|+.+.+.+
T Consensus 256 ---------------------------------cl~tlh~HKn--tVl~~~f-~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 256 ---------------------------------CLATLHGHKN--TVLAVKF-NPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred ---------------------------------hhhhhhhccc--eEEEEEE-cCCCCeeEEccCCceEEEEehhHhHHH
Confidence 2334455666 4899998 999999999999999999999999999
Q ss_pred EEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 379 RVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.++++|...+++++|+|-. .+|.+|+.||.|..|.+...+.+ .-.+|...|++++|+|-|..|++|+.|.++++|-
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999999999999965 47889999999999999855444 3467888899999999999999999999999995
No 29
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.9e-42 Score=270.14 Aligned_cols=293 Identities=20% Similarity=0.314 Sum_probs=255.7
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCc
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQ 129 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~ 129 (458)
.+++.+.+.+|.+.|.|+++.|..++|+||+.|++|+|||+.+++...++ .+|...|..+++++ -..++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~--rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSK--RHPYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeecc--cCceEEEecCCCe
Confidence 34788899999999999999999999999999999999999999998887 89999999999999 8999999999999
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
|+.||++.++.+.. +.+|-..|.+++.+|.- .+|++|+.|.++++||+++...+..+.. |..+|.++
T Consensus 217 VKCwDLe~nkvIR~--YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~G----------H~~~V~~V 283 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRH--YHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSG----------HTNPVASV 283 (460)
T ss_pred eEEEechhhhhHHH--hccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecC----------CCCcceeE
Confidence 99999998887765 88999999999999988 7899999999999999999988877764 55579999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~ 289 (458)
.+.|.+ -.+++|+.|++|++||++.++. ......|...+++++.+|....+|+++.+.|+-|++
T Consensus 284 ~~~~~d-pqvit~S~D~tvrlWDl~agkt---------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~ 347 (460)
T KOG0285|consen 284 MCQPTD-PQVITGSHDSTVRLWDLRAGKT---------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL 347 (460)
T ss_pred EeecCC-CceEEecCCceEEEeeeccCce---------------eEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence 999874 5889999999999999999863 344566889999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
..+ .....+.+|... +++++. ..| .++++|+++|.+.+
T Consensus 348 p~g--------------------------------------~f~~nlsgh~~i--intl~~-nsD-~v~~~G~dng~~~f 385 (460)
T KOG0285|consen 348 PEG--------------------------------------EFLQNLSGHNAI--INTLSV-NSD-GVLVSGGDNGSIMF 385 (460)
T ss_pred Ccc--------------------------------------chhhccccccce--eeeeee-ccC-ceEEEcCCceEEEE
Confidence 873 445567788875 788876 555 48889999999999
Q ss_pred EEecCCeEEEEeec--------CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 370 WKKKGGELIRVIEA--------DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 370 wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
||.++|-..+..+. ....|.+.+|...|..|++|..|.+|++|.-+.
T Consensus 386 wdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 386 WDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred EecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 99998865544321 235689999999999999999999999997553
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8.4e-43 Score=280.14 Aligned_cols=280 Identities=19% Similarity=0.322 Sum_probs=235.4
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
|.+|.+.|+|++|++|+..|.+.+|+..+- .....++.|..+|+++.|+++|.++++|+
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~f---------------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD 157 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSF---------------------NFETILQAHDSPVRTMKWSHNGTWMISGD 157 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCcee---------------------eHHHHhhhhcccceeEEEccCCCEEEEcC
Confidence 346778999999999999999999998621 12234678999999999999999999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.+|.|++|+..-.. ++.+...|...|++++|+| ....+++|+.||+|+|||....+.... +.+|.-.|.++.|+|
T Consensus 158 ~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSp--nDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP 232 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSP--NDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHP 232 (464)
T ss_pred CCceEEecccchhh-hHHhhHhhhhhhheeccCC--CCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCC
Confidence 99999999976544 4555456669999999999 899999999999999999988776554 799999999999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
.. .++++++.|..|++||.++++++..+.. +...|..+.|+|+ +++|++++.|..++++|+++.+.
T Consensus 233 ~k-gLiasgskDnlVKlWDprSg~cl~tlh~----------HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkE-- 298 (464)
T KOG0284|consen 233 TK-GLIASGSKDNLVKLWDPRSGSCLATLHG----------HKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKE-- 298 (464)
T ss_pred cc-ceeEEccCCceeEeecCCCcchhhhhhh----------ccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHH--
Confidence 98 6899999999999999999999887764 5557999999998 69999999999999999986432
Q ss_pred CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
T Consensus 299 -------------------------------------------------------------------------------- 298 (464)
T KOG0284|consen 299 -------------------------------------------------------------------------------- 298 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCC
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHST 398 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~ 398 (458)
+..+++|+.. ++++.| +| ...+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|-|.
T Consensus 299 ------------l~~~r~Hkkd--v~~~~W-hP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 299 ------------LFTYRGHKKD--VTSLTW-HPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred ------------HHHhhcchhh--heeecc-ccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence 2333444442 556665 44 3457889999999999999866666555 57999999999999999
Q ss_pred eEEEeecCCcEEEecCC
Q 012712 399 VLASSGIESDIKILTPN 415 (458)
Q Consensus 399 ~l~s~~~d~~i~iw~~~ 415 (458)
+|++|+.|.++++|.-.
T Consensus 364 il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTRN 380 (464)
T ss_pred eEeecCCCcceeeeccC
Confidence 99999999999999754
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-40 Score=271.61 Aligned_cols=319 Identities=18% Similarity=0.255 Sum_probs=264.3
Q ss_pred CCCCCC-eEEEeeCCCcEEEEEccc--cccccccccccccccccceEEeeeeeEe--ec----CCCceEEEEEecCCCEE
Q 012712 6 NNNNNK-RARTSVDKALVDVWLREL--GQLSTRNFALRRRASEDLVLRLGIYAKL--DK----HRGCVNTVSFNTDGDIL 76 (458)
Q Consensus 6 ~~~~~~-~l~~~~~d~~i~iw~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----h~~~v~~~~~s~~~~~l 76 (458)
++|-.. +|++|+.|.+.|+|++.. .....+ +.+.+.+ -+ -...|++++|+.+|..|
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q---------------~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---------------LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchh---------------hhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 455544 899999999999999984 111100 0011111 11 23579999999999999
Q ss_pred EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~ 156 (458)
|+|+.||.+++|+.. |..+..+ ..|.++|.++.|+. .|.+|++++.|+++.+||..++...+. +..|..+...+
T Consensus 251 atG~~~G~~riw~~~-G~l~~tl-~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~--f~~~s~~~lDV 324 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKD-GNLISTL-GQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQ--FEFHSAPALDV 324 (524)
T ss_pred EEeecCcEEEEEecC-chhhhhh-hccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEe--eeeccCCccce
Confidence 999999999999965 5665666 78999999999999 999999999999999999988877665 66688887888
Q ss_pred EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
.|-.+. -|++++.|+.|+++.+....++..+.. |.++|.++.|+|. +.+|++++.|++++||.....
T Consensus 325 dW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~G----------H~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 325 DWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIG----------HHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred EEecCc--eEeecCCCceEEEEEecCCCcceeeec----------ccCceEEEEECCC-CceEEEecCCCeeEeeecCCC
Confidence 998765 489999999999999999888888864 5668999999998 799999999999999998765
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc---------EEEEec-CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---------LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~ 306 (458)
.. .+-+..|...|..+.|+|.|. .+++++ +..+++||+..
T Consensus 392 ~~---------------~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~--------------- 441 (524)
T KOG0273|consen 392 NS---------------VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES--------------- 441 (524)
T ss_pred cc---------------hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---------------
Confidence 42 234556788999999999753 556555 67899999987
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCc
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRH 386 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 386 (458)
+.++..|..|..+ |.+++| +|+|+|+|+|+.||.|.+|+.++++.++.+.+ .+
T Consensus 442 -----------------------gv~i~~f~kH~~p--Vysvaf-S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~ 494 (524)
T KOG0273|consen 442 -----------------------GVPIHTLMKHQEP--VYSVAF-SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TG 494 (524)
T ss_pred -----------------------CceeEeeccCCCc--eEEEEe-cCCCcEEEecCCCCeeEeccccchheeEeecC-CC
Confidence 5678888888886 999999 99999999999999999999999999999985 45
Q ss_pred eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 387 VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
.|..++|+.+|..|..+-.|+.+.+.|+.
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 69999999999999999999999998763
No 32
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-40 Score=247.03 Aligned_cols=284 Identities=21% Similarity=0.303 Sum_probs=244.7
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
.+.+..|+++|+++.|+-||+|.++++.|++|++|+...+.+++++ .+|..+|..++.+. |+..+++|+.|..+.+|
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~--Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSS--DNSKFASCGGDKAVQVW 86 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeeccccc--cccccccCCCCceEEEE
Confidence 4567899999999999999999999999999999999999999988 89999999999998 99999999999999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCCcceeecceEEEEE
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
|+.+++.... +.+|.+.|+.+.|+.+. ..+++|+.|.++++||.+.... ++.+.. ....|.++..
T Consensus 87 DV~TGkv~Rr--~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQilde----------a~D~V~Si~v 153 (307)
T KOG0316|consen 87 DVNTGKVDRR--FRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDE----------AKDGVSSIDV 153 (307)
T ss_pred EcccCeeeee--cccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhh----------hcCceeEEEe
Confidence 9999998876 99999999999999988 7999999999999999987654 333321 3336888887
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~ 290 (458)
.. ..|++|+.||+++.||++.+++... ....+|+++.|+++++....++ +..+++.|-.
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~G~l~sD-----------------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRKGTLSSD-----------------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeecceeehh-----------------hcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 63 5899999999999999999874321 2245899999999999877777 6689999988
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+ ++.++.+++|.+...-...++ ......+++|++||.|++|
T Consensus 214 t--------------------------------------GklL~sYkGhkn~eykldc~l-~qsdthV~sgSEDG~Vy~w 254 (307)
T KOG0316|consen 214 T--------------------------------------GKLLKSYKGHKNMEYKLDCCL-NQSDTHVFSGSEDGKVYFW 254 (307)
T ss_pred h--------------------------------------hHHHHHhcccccceeeeeeee-cccceeEEeccCCceEEEE
Confidence 8 567788899998877677777 8888899999999999999
Q ss_pred EecCCeEEEEeecCCce-eeEEEecCCCCeEEEeecCCcEEEec
Q 012712 371 KKKGGELIRVIEADRHV-VNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
|+.+...+..+..+... |.+++++|.-..|+++. ++.+..|.
T Consensus 255 dLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 255 DLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred EeccceeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 99999999999988877 89999999888777775 34555554
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-41 Score=293.12 Aligned_cols=278 Identities=22% Similarity=0.318 Sum_probs=230.4
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
.++..-...++|..|++|+.+||.|-.|..|++|.+...+ +..+ .+...+ ..+=+.+.|-.+.+.|
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~l--k~~~~l-----------~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKL--KDASDL-----------SNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccc--cchhhh-----------ccccccccchhhhhcc
Confidence 3444445679999999999999999999999999987543 2222 111111 1222233344455666
Q ss_pred cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
-.+...... +.+|.++|..+.|+|+. ++|++++.|+++++|.+.+..+.-.++. |..+|..+.|+|.
T Consensus 438 ~~~~~~~~~--L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 438 DDSSGTSRT--LYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPR 504 (707)
T ss_pred ccCCceeEE--eecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCC
Confidence 555444433 88999999999999999 7899999999999999999988777763 5568999999997
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~ 294 (458)
|.+||+++.|++-++|.....+
T Consensus 505 -GyYFatas~D~tArLWs~d~~~--------------------------------------------------------- 526 (707)
T KOG0263|consen 505 -GYYFATASHDQTARLWSTDHNK--------------------------------------------------------- 526 (707)
T ss_pred -ceEEEecCCCceeeeeecccCC---------------------------------------------------------
Confidence 7999999999999999876432
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
+.+.+.+|.+. +.|+.| +|+..|+++|+.|.++|+||+.+
T Consensus 527 -------------------------------------PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~ 566 (707)
T KOG0263|consen 527 -------------------------------------PLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVST 566 (707)
T ss_pred -------------------------------------chhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCC
Confidence 34556667664 888888 99999999999999999999999
Q ss_pred CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
|..++.+.||.++|.+++|||+|++||+|+.||.|++||+.++.++ .+.+|.+.|.++.||.||..||+|+.|++|++|
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEE
Confidence 9999999999999999999999999999999999999999998765 788998899999999999999999999999999
Q ss_pred EEec
Q 012712 454 EWLV 457 (458)
Q Consensus 454 ~~~~ 457 (458)
|+..
T Consensus 647 D~~~ 650 (707)
T KOG0263|consen 647 DLTK 650 (707)
T ss_pred Echh
Confidence 9863
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-41 Score=264.72 Aligned_cols=291 Identities=19% Similarity=0.304 Sum_probs=251.4
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..+.|+|||.+|++|+-||.|.+||..+|++.+. .+++....|.-|..+|.|++||.|...||+|+.
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD-------------LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq 283 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD-------------LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ 283 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhh-------------hhhhhhcceeecccceEEEeecccHHHhhccCc
Confidence 4678999999999999999999999999998754 233334456678999999999999999999999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
||.|++|.+.+|.++..|...|+..|+++.|+. |+..+++++.|.++++-.+.+++.+.. +.+|...|+...|.++
T Consensus 284 DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKSGK~LKE--frGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 284 DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKSGKCLKE--FRGHSSYVNEATFTDD 359 (508)
T ss_pred CCcEEEEEEecchHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEeccccchhHHH--hcCccccccceEEcCC
Confidence 999999999999999999889999999999999 999999999999999999999998876 9999999999999999
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
| +.+++++.||+|++|+..+.++...++... ...+|+++-.-|.++..+++|...+++++.++...-
T Consensus 360 G-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~--------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv---- 426 (508)
T KOG0275|consen 360 G-HHIISASSDGTVKVWHGKTTECLSTFKPLG--------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV---- 426 (508)
T ss_pred C-CeEEEecCCccEEEecCcchhhhhhccCCC--------CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE----
Confidence 9 789999999999999999999999887543 344788888889888899999999999888775321
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
|.+ |+...
T Consensus 427 ----------------------Vrs--fsSGk------------------------------------------------ 434 (508)
T KOG0275|consen 427 ----------------------VRS--FSSGK------------------------------------------------ 434 (508)
T ss_pred ----------------------Eee--eccCC------------------------------------------------
Confidence 111 11100
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 401 (458)
.++. ...+.+. +|.|.++++.++|+.++.|...+|++.+++.-|...+..++-+|..+.||
T Consensus 435 -----------------REgG-dFi~~~l-SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 435 -----------------REGG-DFINAIL-SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred -----------------ccCC-ceEEEEe-cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhh
Confidence 0011 1334444 99999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcEEEec
Q 012712 402 SSGIESDIKILT 413 (458)
Q Consensus 402 s~~~d~~i~iw~ 413 (458)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.3e-41 Score=263.91 Aligned_cols=274 Identities=21% Similarity=0.346 Sum_probs=230.7
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.....|.|+.+. ...+++|..|.+|+|||..+..++..+ .+|++.|.|+.| +.+.|++|+.|.+|++||++++
T Consensus 195 e~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqy----d~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQY----DERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeec----cceEEEecCCCceEEEEeccCC
Confidence 345789999984 557999999999999999888887666 899999999999 6679999999999999999999
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
+++.+ +..|...|..+.|+. .++++++.|.++.+||+.....+...... .+ |...|+.+.|+. ++
T Consensus 268 e~l~t--lihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVL-----vG--HrAaVNvVdfd~---ky 332 (499)
T KOG0281|consen 268 EPLNT--LIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVL-----VG--HRAAVNVVDFDD---KY 332 (499)
T ss_pred chhhH--HhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHH-----hh--hhhheeeecccc---ce
Confidence 99877 788999999999986 47899999999999999887644332221 12 445788888874 59
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~ 298 (458)
+++++.|.+|++|++.+.+
T Consensus 333 IVsASgDRTikvW~~st~e------------------------------------------------------------- 351 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCE------------------------------------------------------------- 351 (499)
T ss_pred EEEecCCceEEEEecccee-------------------------------------------------------------
Confidence 9999999999999987754
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
.++++.+|... |.|+.+ .|+++++|+.|.+|++||++.|.++
T Consensus 352 ---------------------------------fvRtl~gHkRG--IAClQY---r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 352 ---------------------------------FVRTLNGHKRG--IACLQY---RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ---------------------------------eehhhhccccc--ceehhc---cCeEEEecCCCceEEEEeccccHHH
Confidence 23445566654 666655 7899999999999999999999999
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc----------cccccccccEEEEEEecCCcEEEeeecCC
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR----------ATLPTNIEQVCFSIYSADYWWSKSQNFSC 448 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~----------~~~~~~~~~v~~~~~s~d~~~l~s~~~d~ 448 (458)
+.+++|..-|.++.| |.+.+++|+.||+|++||+..+.. ..+..|.++|..+.| |...+++++.|.
T Consensus 394 RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 394 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 999999999999999 678899999999999999986632 256778889999888 467788999999
Q ss_pred ceEEEEEec
Q 012712 449 SILLFEWLV 457 (458)
Q Consensus 449 ~i~~w~~~~ 457 (458)
+|.||||+.
T Consensus 470 tILiWdFl~ 478 (499)
T KOG0281|consen 470 TILIWDFLN 478 (499)
T ss_pred eEEEEEcCC
Confidence 999999975
No 36
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.5e-39 Score=287.06 Aligned_cols=296 Identities=23% Similarity=0.401 Sum_probs=250.2
Q ss_pred eeeeEeecC-CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 52 GIYAKLDKH-RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 52 ~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
.+...+.+| ...|.++.|+++|+.|++++.++.+++|+....+ ....+ .+|...|.+++|+| +++++++++.|+
T Consensus 149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~--d~~~l~s~s~D~ 225 (456)
T KOG0266|consen 149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSP--DGSYLLSGSDDK 225 (456)
T ss_pred eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECC--CCcEEEEecCCc
Confidence 445666665 7899999999999999999999999999997766 44444 78999999999999 999999999999
Q ss_pred cEEEeecccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 129 QVRHAQILER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 129 ~i~vw~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
+|++||+... ..+. .+.+|...|++++|+|++ +++++|+.|++|++||++++++...+.. +...|.
T Consensus 226 tiriwd~~~~~~~~~--~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is 292 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLK--TLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGIS 292 (456)
T ss_pred eEEEeeccCCCeEEE--EecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceE
Confidence 9999999444 4444 488999999999999999 8999999999999999999998888875 555899
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEEEeCCCCcEEEEecCC-cEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGLAFSDQSELLVSYNDE-FIY 285 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~-~i~ 285 (458)
+++|+++ +++|++++.|+.|++||+.++... +...+...... +++++.|+|++++++++..+ .++
T Consensus 293 ~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 293 GLAFSPD-GNLLVSASYDGTIRVWDLETGSKL------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred EEEECCC-CCEEEEcCCCccEEEEECCCCcee------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 9999998 789999999999999999998731 00111111122 69999999999999999976 899
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~d 364 (458)
+||+..+ .....+.+|... ..+.+... ++.++++++|+.|
T Consensus 360 ~w~l~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 360 LWDLRSG--------------------------------------KSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSED 400 (456)
T ss_pred EEEccCC--------------------------------------cceeeecccCCcceeEecccc-cCCCCeEEEEeCC
Confidence 9999873 455666666664 23455555 8899999999999
Q ss_pred CeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEee--cCCcEEEecCC
Q 012712 365 GRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSG--IESDIKILTPN 415 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~d~~i~iw~~~ 415 (458)
+.|++|++.++..+..+.+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 401 ~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 401 GSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999 88999999999999999998 78999999764
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.3e-38 Score=272.97 Aligned_cols=286 Identities=25% Similarity=0.417 Sum_probs=242.1
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
+++++|.++|.+++|+|++++|++++.|+.|++|++.+++....+ ..|...+..+.|+| +++.+++++.+|.|++|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD 79 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECC--CCCEEEEEcCCCeEEEEE
Confidence 457799999999999999999999999999999999988766665 68889999999999 889999999999999999
Q ss_pred cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
+.+++.... +..|...+.++.|+|++ .++++++.++.|.+||+++++....+.. +...+.+++|+|+
T Consensus 80 ~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~ 146 (289)
T cd00200 80 LETGECVRT--LTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVNSVAFSPD 146 (289)
T ss_pred cCcccceEE--EeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEEEEEEcCc
Confidence 987665544 66788899999999997 6788888899999999997766555542 3446999999997
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
+.++++++.++.|++||+++.+.. .....+...+.++.|+|+++.+++++ ++.+++||+..+
T Consensus 147 -~~~l~~~~~~~~i~i~d~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 147 -GTFVASSSQDGTIKLWDLRTGKCV---------------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred -CCEEEEEcCCCcEEEEEccccccc---------------eeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 678888888999999999866532 22334567899999999998777776 668999999763
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
.....+..|.. .+.++.| +|++.++++++.||.|++|++.
T Consensus 210 -------------------------------------~~~~~~~~~~~--~i~~~~~-~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 210 -------------------------------------KCLGTLRGHEN--GVNSVAF-SPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred -------------------------------------ceecchhhcCC--ceEEEEE-cCCCcEEEEEcCCCcEEEEEcC
Confidence 23334445554 3888998 9999999998889999999999
Q ss_pred CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
+++.+..+..|...|.+++|+|++++|++++.|+.+++|+
T Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999999999999999999999996
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.4e-39 Score=247.82 Aligned_cols=284 Identities=17% Similarity=0.228 Sum_probs=241.8
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
+.+|++.|+.+.|+| +|..||+++.|..|.+|++..... ....+++|.+.|..+.|.+++ +.+++++.|.+++.||
T Consensus 43 l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECC--CCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEe
Confidence 479999999999999 999999999999999999754333 223478999999999999999 7899999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
+++++....++. +..-++++.-+..+..++.+++.|+++++||+|+....+. ..
T Consensus 119 ~~tG~~~rk~k~----------h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t----------------~~ 172 (338)
T KOG0265|consen 119 AETGKRIRKHKG----------HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT----------------FE 172 (338)
T ss_pred cccceeeehhcc----------ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc----------------cc
Confidence 999998877764 4445777775555678899999999999999998763322 11
Q ss_pred cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
...+++++.|..++..+.+|. ++.|++||++. ......+.|
T Consensus 173 ~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~--------------------------------------~d~~~~lsG 214 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK--------------------------------------NDGLYTLSG 214 (338)
T ss_pred cceeEEEEEecccccceeeccccCceeeecccc--------------------------------------CcceEEeec
Confidence 256799999999998888888 77899999976 456788999
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC----CeEEEEeecCCc----eeeEEEecCCCCeEEEeecCCcEE
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG----GELIRVIEADRH----VVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
|... |+.+.. +|+|.++.+-+.|.++++||+.. ..++..+.+|.. ....++|+|++..+.+|+.|..++
T Consensus 215 h~Dt--It~lsl-s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 215 HADT--ITGLSL-SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred ccCc--eeeEEe-ccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 9985 899998 99999999999999999999864 345777877653 356789999999999999999999
Q ss_pred EecCCcc-cccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 411 ILTPNAA-DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 411 iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+||.... -+..+++|.+.|..++|+|....|.+++.|.+|++=|
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 9999885 4558999999999999999999999999999998743
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.7e-40 Score=272.74 Aligned_cols=285 Identities=16% Similarity=0.199 Sum_probs=240.3
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (458)
..+|+..|+++.|.|. .+.+|++++.|+.|+||++.. ++++. .+.+|..+|.+++|+++| ..|++++.|+.|++|
T Consensus 210 ~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~~~lr--tf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDRRCLR--TFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLW 285 (503)
T ss_pred ccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCcceeh--hhhcchhhhhhhhccccC-Ceeeeeecceeeeee
Confidence 3899999999999994 788999999999999999987 44444 499999999999999999 679999999999999
Q ss_pred eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
|+++|++...+. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++.++ ...
T Consensus 286 DtETG~~~~~f~-----------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---------------eYd 339 (503)
T KOG0282|consen 286 DTETGQVLSRFH-----------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---------------EYD 339 (503)
T ss_pred ccccceEEEEEe-----------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---------------HHH
Confidence 999999998887 344689999999977999999999999999999998543 344
Q ss_pred ccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 259 DEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.|-+.|..+.|-++|+.+++.+++ ++++|+...+-. ..+.
T Consensus 340 ~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---------------------------------------ik~i 380 (503)
T KOG0282|consen 340 RHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---------------------------------------IKNI 380 (503)
T ss_pred hhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---------------------------------------chhh
Confidence 577899999999999999999976 799999876321 1111
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEeecCC--ceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
......+..++.. +|+++++++-+.|+.|.+|.+... ...+.+++|. +--..+.|||||.+|++|+.||.+.+|
T Consensus 381 ~~~~~hsmP~~~~-~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 381 ADPEMHTMPCLTL-HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFW 459 (503)
T ss_pred cchhhccCcceec-CCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEe
Confidence 1112223567777 999999999999999999997543 2335677775 345678999999999999999999999
Q ss_pred cCCccccc-ccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712 413 TPNAADRA-TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE 454 (458)
Q Consensus 413 ~~~~~~~~-~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~ 454 (458)
|..+.++. .+..|.+.+..+.|+|.. .-+||++.||.|++||
T Consensus 460 dwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 460 DWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred echhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99988766 778898999999999988 8889999999999996
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-38 Score=264.55 Aligned_cols=417 Identities=13% Similarity=0.141 Sum_probs=288.0
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccc---------------cccccccccccceEEe------eeeeEeecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTR---------------NFALRRRASEDLVLRL------GIYAKLDKH 60 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~---------------~~~~~~~~~~~~~~~~------~~~~~~~~h 60 (458)
.++-+.|..+.++++-..|.|.|||.+|..+++. +-.-+++|++|..+++ +.++.|..|
T Consensus 17 KsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH 96 (794)
T KOG0276|consen 17 KSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH 96 (794)
T ss_pred eeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc
Confidence 4677899999999999999999999998877765 1123888999998876 788899999
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
.+.|+|++.+|...+++|+|.|-+|++||.+..-...+...+|..-|.+++|.|. |.+.+|+++-|++|++|.+.++.+
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~ 175 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHP 175 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCCCCC
Confidence 9999999999999999999999999999998765444444899999999999995 889999999999999999987776
Q ss_pred eeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
..+ +.+|...|+++.+-+.+ +-+|++|+.|.+|++||.++..+++++.. |...|..+.|+|. -.++
T Consensus 176 nfT--l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG----------Ht~Nvs~v~fhp~-lpii 242 (794)
T KOG0276|consen 176 NFT--LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG----------HTNNVSFVFFHPE-LPII 242 (794)
T ss_pred cee--eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc----------ccccceEEEecCC-CcEE
Confidence 655 88999999999998865 34799999999999999999999998864 4447999999997 6799
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~ 299 (458)
++|++||+++||+..+.++...+. -.-.++.+++-.+.+..++.|.|....+..+........+.
T Consensus 243 isgsEDGTvriWhs~Ty~lE~tLn---------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd 307 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLEKTLN---------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMD 307 (794)
T ss_pred EEecCCccEEEecCcceehhhhhh---------------cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeec
Confidence 999999999999999877544332 23568999999999888999998876666665543322222
Q ss_pred CCCcccccccccc-CCCCccccCCC-CCCcccccC-ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC--
Q 012712 300 SSPVSTRSEASEM-GSDHTSAASPS-TANTDVRIA-PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-- 374 (458)
Q Consensus 300 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-- 374 (458)
....-.......+ ......+.... ..+.+..+. .+.+ +... .....++. +|+|+++++++ ||.-.||..-.
T Consensus 308 ~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeL-gs~e-iyPq~L~h-sPNGrfV~Vcg-dGEyiIyTala~R 383 (794)
T KOG0276|consen 308 SNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKEL-GSVE-IYPQTLAH-SPNGRFVVVCG-DGEYIIYTALALR 383 (794)
T ss_pred CCccEEEEcCceeeeeeceeccCcccccCCccccchhhhc-cccc-cchHHhcc-CCCCcEEEEec-CccEEEEEeeehh
Confidence 1111111111100 00000000000 000000000 0111 1110 11234555 99999888776 77777775311
Q ss_pred ----CeEE--------------------E---EeecCCceeeEEEecC---CCCeEEEeecCCcEEEecCCccccccccc
Q 012712 375 ----GELI--------------------R---VIEADRHVVNCIEPHP---HSTVLASSGIESDIKILTPNAADRATLPT 424 (458)
Q Consensus 375 ----~~~~--------------------~---~~~~~~~~v~~~~~s~---~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 424 (458)
|+.+ . .++.|.. ..+.++. -|..|+....++.+++||-+++++..-..
T Consensus 384 nK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ks--i~~~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~ 461 (794)
T KOG0276|consen 384 NKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKS--IRPDMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE 461 (794)
T ss_pred hcccccceeEEEcCCCCeEEEEecCCceEEEecceeccc--cccccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe
Confidence 1100 0 1111110 0001111 12334444456788888888877653322
Q ss_pred ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 425 NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 425 ~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
-....+.|+-+|.+++.++.| +.++..+.
T Consensus 462 --v~~k~v~w~d~g~lVai~~d~-Sfyil~~n 490 (794)
T KOG0276|consen 462 --VTSKHVYWSDNGELVAIAGDD-SFYILKFN 490 (794)
T ss_pred --eccceeEEecCCCEEEEEecC-ceeEEEec
Confidence 224568899999999887766 45555543
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-38 Score=302.75 Aligned_cols=292 Identities=16% Similarity=0.277 Sum_probs=231.7
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
+..|.+.|.+++|+|+|++||+|+.|+.|+||++.... ....+ .+...+.+++|+|. ++.+|++++.||
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~~las~~~Dg 555 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSY-IKSQVASSNFEG 555 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccC-CCCEEEEEeCCC
Confidence 45699999999999999999999999999999975421 11222 34567999999873 478999999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.|++||+.+++.+.. +.+|...|++++|+|.++.+|++++.|+.|++||++++.....+. ....+.+
T Consensus 556 ~v~lWd~~~~~~~~~--~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------~~~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQLVTE--MKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------TKANICC 622 (793)
T ss_pred eEEEEECCCCeEEEE--ecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------cCCCeEE
Confidence 999999988766554 788999999999998444789999999999999999887766554 2235889
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLF 287 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~ 287 (458)
+.|++.++.+|++|+.||.|++||+++.+. +......|...|.++.|. ++.+|++++ ++.|++|
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------------~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKL--------------PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------------cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEE
Confidence 999765589999999999999999987541 122344678899999997 566777776 5689999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
|+....... ....+..+.+|... +..++| +|++++|++|+.|+.|
T Consensus 688 d~~~~~~~~--------------------------------~~~~l~~~~gh~~~--i~~v~~-s~~~~~lasgs~D~~v 732 (793)
T PLN00181 688 DLSMSISGI--------------------------------NETPLHSFMGHTNV--KNFVGL-SVSDGYIATGSETNEV 732 (793)
T ss_pred eCCCCcccc--------------------------------CCcceEEEcCCCCC--eeEEEE-cCCCCEEEEEeCCCEE
Confidence 987531100 02345677888774 778888 9999999999999999
Q ss_pred EEEEecCCeEEEEe-------------ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 368 FIWKKKGGELIRVI-------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 368 ~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
++|+.....++..+ ..|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 733 ~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 733 FVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99998665443222 234567999999999999999999999999985
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.4e-39 Score=255.30 Aligned_cols=285 Identities=20% Similarity=0.319 Sum_probs=240.1
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
.++.+.|.+..++||+.|++|+|||+.+|++.. ++.||-..|..+++|+--.||.+++.
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---------------------tltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---------------------TLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEE---------------------eecchhheeeeeeecccCceEEEecC
Confidence 467788999999999999999999999998773 58999999999999999999999999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
|+.|+.||++..+.+..+ .+|-..|+++...| .-..|++|+.|.++++||+++...+.. +.+|..+|..+.+.|-
T Consensus 214 dk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRtr~~V~~--l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRTRASVHV--LSGHTNPVASVMCQPT 288 (460)
T ss_pred CCeeEEEechhhhhHHHh-ccccceeEEEeccc--cceeEEecCCcceEEEeeecccceEEE--ecCCCCcceeEEeecC
Confidence 999999999999998888 79999999999999 899999999999999999999887766 9999999999999998
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
++ .+++|+.|++|++||++.++....+.. +...+.+++.+|. .+.|++++.|. |+-|++..+....
T Consensus 289 dp-qvit~S~D~tvrlWDl~agkt~~tlt~----------hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~- 354 (460)
T KOG0285|consen 289 DP-QVITGSHDSTVRLWDLRAGKTMITLTH----------HKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQ- 354 (460)
T ss_pred CC-ceEEecCCceEEEeeeccCceeEeeec----------ccceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhh-
Confidence 85 589999999999999999988777654 4557999999998 68899988874 9999998876432
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
...+|...|++++.+.||-+++.+..+.+..||.+++........
T Consensus 355 --------------nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t--------------------- 399 (460)
T KOG0285|consen 355 --------------NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQT--------------------- 399 (460)
T ss_pred --------------ccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccc---------------------
Confidence 255678899999999998655555566899999998754433210
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
......+.... .|.+.+| +..|..|++|..|.+|++|.-.
T Consensus 400 --------~vqpGSl~sEa---gI~as~f-Dktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 400 --------IVQPGSLESEA---GIFASCF-DKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------cccCCcccccc---ceeEEee-cccCceEEeccCCcceEEEecc
Confidence 00111122222 3788888 9999999999999999999753
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-39 Score=280.52 Aligned_cols=257 Identities=21% Similarity=0.286 Sum_probs=217.0
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccc----cccccccccccceEEe------eeeeEeecCCCceEEEEEecC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTR----NFALRRRASEDLVLRL------GIYAKLDKHRGCVNTVSFNTD 72 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~s~~ 72 (458)
.+-|++++.+||.|..|..|++|.+...++.+- .....-..+.|....+ ...+++.||.++|..++|+|+
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd 462 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPD 462 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeeccc
Confidence 355899999999999999999999985332211 0111111111111111 345568999999999999999
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
.++|++++.|+++++|.+.+..++..+ .+|..+|..+.|+| .|-++||++.|++-++|.......... +.+|.+.
T Consensus 463 ~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRi--faghlsD 537 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRI--FAGHLSD 537 (707)
T ss_pred ccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhh--hcccccc
Confidence 999999999999999999999998887 79999999999999 999999999999999999887666554 8999999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
|.|+.|+|+. +++++|+.|.++++||+.+|..+..|.. |..+|.+++|+|+ |.+|++|+.||.|.+||
T Consensus 538 V~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al~~Sp~-Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 538 VDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTALAFSPC-GRYLASGDEDGLIKIWD 605 (707)
T ss_pred cceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEEEEcCC-CceEeecccCCcEEEEE
Confidence 9999999999 7899999999999999999999988864 5668999999997 89999999999999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccC
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDM 291 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~ 291 (458)
+.+++.. ....+|.+.|.++.|+.+|..||+++.| +|++||+..
T Consensus 606 l~~~~~v---------------~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 606 LANGSLV---------------KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cCCCcch---------------hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9998643 3345578999999999999999999855 899999875
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.8e-38 Score=237.82 Aligned_cols=282 Identities=17% Similarity=0.289 Sum_probs=219.2
Q ss_pred CCCCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEe-ecCCCceEEEEEecCCCEEEEecC
Q 012712 4 ASNNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKL-DKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 4 ~~~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
++++|. |..||+|+.|..||||+...+. .+.+...+ .+|+..|++++|+|.|++||+||.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~~~------------------s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSSGD------------------SWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCCCC------------------cEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 456677 8899999999999999998432 12333444 479999999999999999999999
Q ss_pred CCeEEEEECCCc--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTE--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~ 158 (458)
|.++.||.-..+ +++..+ .+|...|.+++|++ +|++||+++.|..|-+|.+..+... ....++.|+..|..+.|
T Consensus 82 D~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATL-EGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred cceEEEeecCCCceeEEeee-eccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 999999986654 444444 89999999999999 9999999999999999999865543 23458899999999999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCC---CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTG---AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
+|.. .+|++++.|.+|++|.-..+ .+.+.+.. +...|.+++|+|. +..+++++.|++++||...+
T Consensus 159 HPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g----------~~~TVW~~~F~~~-G~rl~s~sdD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 159 HPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDG----------HENTVWSLAFDNI-GSRLVSCSDDGTVSIWRLYT 226 (312)
T ss_pred cCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecC----------ccceEEEEEecCC-CceEEEecCCcceEeeeecc
Confidence 9988 79999999999999987632 23444432 3447999999997 68999999999999998763
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
. +...|...+..++|. +| .|++++ ++.|++|..........+
T Consensus 227 ~-------------------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~---------------- 269 (312)
T KOG0645|consen 227 D-------------------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSW---------------- 269 (312)
T ss_pred C-------------------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchH----------------
Confidence 2 233356789999998 44 677766 668999986532111110
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEec
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 373 (458)
......-..|.. .|++++| .|. .++|++|+.||.|++|.+.
T Consensus 270 ---------------~l~~~~~~aHe~--dVNsV~w-~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 270 ---------------NLLAKKEGAHEV--DVNSVQW-NPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---------------HHHHhhhccccc--ccceEEE-cCCCCCceeecCCCceEEEEEec
Confidence 111223334555 5999999 994 6799999999999999874
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=242.88 Aligned_cols=290 Identities=20% Similarity=0.273 Sum_probs=247.1
Q ss_pred eEeecCCCceEEEEEec---CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 55 AKLDKHRGCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
.+..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+-+| .+|.+.|++..... +...-++++.|-+-+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~--na~~aasaaadftak 84 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNK--NATRAASAAADFTAK 84 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCc--hhhhhhhhcccchhh
Confidence 35679999999999986 8999999999999988888999999998 79999999999987 777888999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccc-eeeecccCCCCcceeecceEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
+||.-++..+.. + .|..-|.+++|+.|. +.|++|+.+..+++||++..+... .+. + +.+.|..+.
T Consensus 85 vw~a~tgdelhs--f-~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~--------g--htg~Ir~v~ 150 (334)
T KOG0278|consen 85 VWDAVTGDELHS--F-EHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEIS--------G--HTGGIRTVL 150 (334)
T ss_pred hhhhhhhhhhhh--h-hhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhc--------C--CCCcceeEE
Confidence 999999988764 3 488899999999998 689999999999999998775432 222 2 556789999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~ 290 (458)
|... .+.|++.+.|++||+||.+++...+.+.+ +.+|+++.++++|++|..+....|..||..
T Consensus 151 wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------~s~VtSlEvs~dG~ilTia~gssV~Fwdak 213 (334)
T KOG0278|consen 151 WCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------NSPVTSLEVSQDGRILTIAYGSSVKFWDAK 213 (334)
T ss_pred Eecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------CCCCcceeeccCCCEEEEecCceeEEeccc
Confidence 9876 57888889999999999999986554333 457899999999999999989999999988
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+ ...++.+.-.. .|.+... +|+...+++|++|..++.|
T Consensus 214 s--------------------------------------f~~lKs~k~P~---nV~SASL-~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 214 S--------------------------------------FGLLKSYKMPC---NVESASL-HPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred c--------------------------------------ccceeeccCcc---ccccccc-cCCCceEEecCcceEEEEE
Confidence 7 23333333332 3777777 9999999999999999999
Q ss_pred EecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 371 KKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 371 d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
|..+++.+..+ ++|.++|.++.|+|||...|+|++||+|+||....++..
T Consensus 252 Dy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 252 DYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred eccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999886 899999999999999999999999999999998765443
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-38 Score=264.99 Aligned_cols=287 Identities=22% Similarity=0.338 Sum_probs=251.3
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
+..+++..|+..|.++.|+|...+++++-.+|.|.||+.++...+..+ .-...+|.+..|-+ ..+++++|+.|..|+
T Consensus 4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfia--RknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIA--RKNWIVTGSDDMQIR 80 (794)
T ss_pred hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeee--ccceEEEecCCceEE
Confidence 344567779999999999999999999999999999999999998888 56678999999999 899999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
+|+..+.+.+.. +..|.+.|++++.+|..| ++++++.|-.|++||.+.. .+.+.+. +|.| .|.+++
T Consensus 81 Vfnynt~ekV~~--FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfe--------GH~H--yVMqv~ 147 (794)
T KOG0276|consen 81 VFNYNTGEKVKT--FEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFE--------GHEH--YVMQVA 147 (794)
T ss_pred EEecccceeeEE--eeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEc--------Ccce--EEEEEE
Confidence 999999988876 899999999999999996 6899999999999998765 3444443 4334 799999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCC-cEEEE
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLF 287 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~-~i~i~ 287 (458)
|+|.+.+.|++++-|++|++|.+.+.. +.....+|...|+++.|-+.| .+|++|+|| .+++|
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~---------------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPH---------------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCC---------------CceeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 999999999999999999999998754 234556899999999999866 599999988 79999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
|.++ ..+++++.||.+. |..+.| +|.-.++++|++||++
T Consensus 213 DyQt--------------------------------------k~CV~TLeGHt~N--vs~v~f-hp~lpiiisgsEDGTv 251 (794)
T KOG0276|consen 213 DYQT--------------------------------------KSCVQTLEGHTNN--VSFVFF-HPELPIIISGSEDGTV 251 (794)
T ss_pred ecch--------------------------------------HHHHHHhhccccc--ceEEEe-cCCCcEEEEecCCccE
Confidence 9988 6789999999986 788887 9999999999999999
Q ss_pred EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
+||+..+.++..++.-.-+.+++++-.+.++.++.|.++|.|.
T Consensus 252 riWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 252 RIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999988888877778899999988888888888777653
No 47
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=6.4e-37 Score=267.89 Aligned_cols=387 Identities=15% Similarity=0.192 Sum_probs=302.6
Q ss_pred CeEEEeeCCCcEEEEEccccccccccc-----------cc----cccccccceEEe------eeeeEeecCCCceEEEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNF-----------AL----RRRASEDLVLRL------GIYAKLDKHRGCVNTVSF 69 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~-----------~~----~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~ 69 (458)
..++.|+.+|.++|||+.+++++.+.. +| .+.|..++.+-+ +.+.+|+.-.+.|++++|
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 347889999999999999999987611 11 566777776554 667777744699999999
Q ss_pred ecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeec
Q 012712 70 NTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLL 146 (458)
Q Consensus 70 s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~ 146 (458)
..||+ .+|+|+..|.+.+||++..+........|.+.|....|.| ....+++++.|..+++|=..++.. ...+.-
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~--~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R 330 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP--GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSR 330 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC--CCceEeeccCCCceeEEEeeCCCCcchheeec
Confidence 99995 6677778899999999998888888778999999999999 999999999999999987665543 222335
Q ss_pred cccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccce---------------e-----eecccC-----------
Q 012712 147 GKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL---------------F-----TCRPID----------- 195 (458)
Q Consensus 147 ~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---------------~-----~~~~~~----------- 195 (458)
.+|..+..++.|.-...+.+.+++.|++++.+++......+. . ..++..
T Consensus 331 ~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 331 GGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred cCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 689999999999854448899999999888886532110000 0 000000
Q ss_pred ----------------------CCCcc--------eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712 196 ----------------------DRRNY--------MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (458)
Q Consensus 196 ----------------------~~~~~--------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (458)
....| .....+.+++.++. |++.+.|+..|.|-+|++.++-..+.+
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf--- 486 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSF--- 486 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEecc-CceEEEeccCCeEEEEEcccCeeeccc---
Confidence 00000 02356788999997 799999999999999999988643331
Q ss_pred CCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
.-...|.++|++++...-++.+++++ +|-++.||.....
T Consensus 487 ---------~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~------------------------------- 526 (910)
T KOG1539|consen 487 ---------GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV------------------------------- 526 (910)
T ss_pred ---------ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-------------------------------
Confidence 11245789999999999888888877 6789999998742
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 404 (458)
....+.-.. .+..+.+ +.....++.+..|-.|+++|..+.+.++.+.+|.+.|++++|||||++|++++
T Consensus 527 -------l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 527 -------LKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred -------eeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 222222211 2556665 66777889999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecC-CceEEEE
Q 012712 405 IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFS-CSILLFE 454 (458)
Q Consensus 405 ~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-~~i~~w~ 454 (458)
.|++|++||+.++.+.....-..+.+++.|||+|.+|||...| .-|++|-
T Consensus 596 mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999998877788889999999999999999999 5599985
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7e-37 Score=263.75 Aligned_cols=282 Identities=21% Similarity=0.326 Sum_probs=240.4
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|..+|.+++|+| ++++|++++.+|.+++|++.+++.... +..|...+..+.|+|++ ..+++++.+|.|++||+
T Consensus 6 ~~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 6 KGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDL 80 (289)
T ss_pred cccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeCCCcEEE--EecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEc
Confidence 58999999999999 999999999999999999987765444 67788899999999998 68899999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
+.++....+.. +...+.++.|+|+ +.++++++.++.+.+||+++.+.. .....|
T Consensus 81 ~~~~~~~~~~~----------~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~---------------~~~~~~ 134 (289)
T cd00200 81 ETGECVRTLTG----------HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL---------------TTLRGH 134 (289)
T ss_pred CcccceEEEec----------cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE---------------EEeccC
Confidence 98766555542 3346899999997 678888888999999999865432 222346
Q ss_pred ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...+.+++|+|++.++++++ ++.+++||+... .....+..|
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~--------------------------------------~~~~~~~~~ 176 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG--------------------------------------KCVATLTGH 176 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc--------------------------------------ccceeEecC
Confidence 67899999999999999998 779999999753 334455556
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
.. .+.++.| +|+++.+++++.++.|++||+.+++.+..+..|...+.+++|+|++.++++++.|+.|++|++..++.
T Consensus 177 ~~--~i~~~~~-~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 177 TG--EVNSVAF-SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred cc--ccceEEE-CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 54 3889998 99999999999999999999999999999988999999999999998999888899999999987654
Q ss_pred c-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 420 A-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 420 ~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
. .+..|...+.+++|+|++.+|++++.|+.|++|+
T Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 254 VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 4 5567778899999999999999999999999996
No 49
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=235.73 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=240.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|...+.+++|.. +|..|++++.|+++++|++...+........+|.+.|-.++|+|..+.+|++++.|.+|++||+
T Consensus 17 ~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhcceEEEEcc--cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 67899999999999 9999999999999999999887666555678899999999999999899999999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
+.+++...... ...-.-+.|+|+ +.++++++.|..|.+.|.++.+.....+ .
T Consensus 95 r~~k~~~~i~~-----------~~eni~i~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~ 146 (313)
T KOG1407|consen 95 RSGKCTARIET-----------KGENINITWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQ----------------F 146 (313)
T ss_pred ccCcEEEEeec-----------cCcceEEEEcCC-CCEEEEecCcccEEEEEecccceeehhc----------------c
Confidence 99998877653 223456889998 6899999999999999999987543322 2
Q ss_pred ccceeEEEeCCCCcEE-EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELL-VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l-~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...+..++|+-++.++ ++.+.|.|.|..... .+++..++.|
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps--------------------------------------Lkpv~si~AH 188 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPS--------------------------------------LKPVQSIKAH 188 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccc--------------------------------------cccccccccC
Confidence 3457778888666554 455568888887765 5677888899
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
... ..++.| +|+|+|+|+|+.|..+.+||++..-+++.+.-+.-+|..+.||.||++||+|++|..|-|=++++|..
T Consensus 189 ~sn--CicI~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 189 PSN--CICIEF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred Ccc--eEEEEE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 874 889998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccEEEEEEecCCcEEEeeecC
Q 012712 420 ATLPTNIEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~s~~~d 447 (458)
..-..+.++...++|+|...+||.+..|
T Consensus 266 ~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 266 VWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EEEeeccCCceeEEecCCCceeeEEecC
Confidence 8888889999999999999999987765
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-37 Score=272.34 Aligned_cols=305 Identities=16% Similarity=0.256 Sum_probs=261.3
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
.|...+..|..++|+|...+++++-..|.|++||.+-+.++..| ..|.++|..++|+| .+.++++|+.|-.|++|+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~--~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHP--TQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecC--CCCeEEecCCccEEEEEec
Confidence 35566788999999999999999999999999999999999998 79999999999999 9999999999999999999
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
.+.+++.+ +.+|.+.|..+.|++.-+ .+++++.|.+|+||+..+++++..+.. |...|.|..|+|.
T Consensus 81 k~rrclft--L~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltG----------HnHYVMcAqFhpt- 146 (1202)
T KOG0292|consen 81 KTRRCLFT--LLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTG----------HNHYVMCAQFHPT- 146 (1202)
T ss_pred ccceehhh--hccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEec----------CceEEEeeccCCc-
Confidence 99888876 899999999999999985 789999999999999999999988874 4447999999997
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCC--C------------CCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFG--Q------------PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (458)
..++++++-|.+|++||+...+.......+ . +......+.+..+|...|+-++|+|.-.+|++|+|
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 689999999999999999765433221110 0 00011234567789999999999999999999998
Q ss_pred C-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712 282 E-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 282 ~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~ 360 (458)
| .|++|.++..+ .....+..+|.+. |.++.| +|...++++
T Consensus 227 DRqVKlWrmnetK------------------------------------aWEvDtcrgH~nn--Vssvlf-hp~q~lIlS 267 (1202)
T KOG0292|consen 227 DRQVKLWRMNETK------------------------------------AWEVDTCRGHYNN--VSSVLF-HPHQDLILS 267 (1202)
T ss_pred cceeeEEEecccc------------------------------------ceeehhhhcccCC--cceEEe-cCccceeEe
Confidence 8 69999987632 3456678899986 889998 999999999
Q ss_pred ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.++|++|++||+...+.+++++...+.-+.++-+|..+++|+| .|+-+.+|.++..
T Consensus 268 nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERE 323 (1202)
T ss_pred cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEccc
Confidence 9999999999999999999998777889999999999988765 5777788887744
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1e-36 Score=293.72 Aligned_cols=305 Identities=13% Similarity=0.123 Sum_probs=238.9
Q ss_pred CCeEEEEECCCcceeeeec----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc----c--eeeeecccccc
Q 012712 82 DRRVILWDWKTERVKLSFH----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG----G--VETKLLGKHQG 151 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~----~--~~~~~~~~~~~ 151 (458)
+|.+++|+.........+. ..|.+.|.+++|+| ++++|++|+.|+.|++|+..... . .....+. +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccC
Confidence 6778888887655433321 34899999999999 99999999999999999975421 1 0111122 346
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.+.+++|+|....+|++++.||.|++||+.+++....+.. +...|.+++|+|.++.+|++|+.|+.|++|
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~----------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE----------HEKRVWSIDYSSADPTLLASGSDDGSVKLW 603 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC----------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEE
Confidence 7899999986557899999999999999998876655542 455799999998557899999999999999
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC-CCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS-DQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 309 (458)
|+++...... .. +...+.++.|+ +++.+|++++ ++.|++||+....
T Consensus 604 d~~~~~~~~~---------------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---------------- 651 (793)
T PLN00181 604 SINQGVSIGT---------------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---------------- 651 (793)
T ss_pred ECCCCcEEEE---------------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----------------
Confidence 9987653211 11 23568899995 5789999988 5589999987631
Q ss_pred cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC------CeEEEEeec
Q 012712 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------GELIRVIEA 383 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~ 383 (458)
.....+.+|... |.++.| . ++.+|++++.|++|++||+.. .+++..+.+
T Consensus 652 ---------------------~~~~~~~~h~~~--V~~v~f-~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 652 ---------------------LPLCTMIGHSKT--VSYVRF-V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred ---------------------ccceEecCCCCC--EEEEEE-e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence 134456677764 888988 5 678999999999999999974 357788999
Q ss_pred CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--------------ccccccccEEEEEEecCCcEEEeeecCCc
Q 012712 384 DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--------------TLPTNIEQVCFSIYSADYWWSKSQNFSCS 449 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--------------~~~~~~~~v~~~~~s~d~~~l~s~~~d~~ 449 (458)
|...+..++|+|++++||+|+.|+.|++|+....... ....+...|.+++|+|++..|++|+.||.
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 9999999999999999999999999999997644211 11234456999999999999999999999
Q ss_pred eEEEEEe
Q 012712 450 ILLFEWL 456 (458)
Q Consensus 450 i~~w~~~ 456 (458)
|+|||..
T Consensus 787 I~i~~~~ 793 (793)
T PLN00181 787 IKILEMV 793 (793)
T ss_pred EEEEecC
Confidence 9999963
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.2e-39 Score=253.48 Aligned_cols=266 Identities=18% Similarity=0.293 Sum_probs=222.7
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
...+++|..|.+|+|||.++-+++. .+.||++.|.|+.|. .+.+++|+.|.+|+|||
T Consensus 207 D~kiVSGlrDnTikiWD~n~~~c~~---------------------~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWD 263 (499)
T KOG0281|consen 207 DEKIVSGLRDNTIKIWDKNSLECLK---------------------ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWD 263 (499)
T ss_pred chhhhcccccCceEEeccccHHHHH---------------------hhhcCCCcEEeeecc--ceEEEecCCCceEEEEe
Confidence 3458999999999999999766664 489999999999995 56999999999999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEE
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (458)
+++++++..+ ..|.+.|..+.|+ ..++++++.|.++.+||+.....+ ....+.+|...|+.+.|+. +++++
T Consensus 264 v~tge~l~tl-ihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVs 335 (499)
T KOG0281|consen 264 VNTGEPLNTL-IHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVS 335 (499)
T ss_pred ccCCchhhHH-hhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEE
Confidence 9999998887 6899999999995 469999999999999999876543 2244789999999999976 58999
Q ss_pred ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
++.|.+|++|++.+.+.+..+.. |...|.|+.+. ++++++|+.|.+|++||+..+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~g----------HkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~----------- 391 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNG----------HKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA----------- 391 (499)
T ss_pred ecCCceEEEEeccceeeehhhhc----------ccccceehhcc---CeEEEecCCCceEEEEeccccH-----------
Confidence 99999999999999999888764 33356777664 5799999999999999987653
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
T Consensus 392 -------------------------------------------------------------------------------- 391 (499)
T KOG0281|consen 392 -------------------------------------------------------------------------------- 391 (499)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe---------EEEEeecCCceeeEEEecCCCCe
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE---------LIRVIEADRHVVNCIEPHPHSTV 399 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~s~~~~~ 399 (458)
+++.+.||+.- |.++.| |.+.+++|+.||+|++||+..+. ++.++..|++.|..+.| |...
T Consensus 392 ---cLRvLeGHEeL--vRciRF---d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fq 461 (499)
T KOG0281|consen 392 ---CLRVLEGHEEL--VRCIRF---DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQ 461 (499)
T ss_pred ---HHHHHhchHHh--hhheee---cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceE
Confidence 34556677764 778877 67889999999999999987653 33455679999999999 6678
Q ss_pred EEEeecCCcEEEecCCccccc
Q 012712 400 LASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 400 l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+++++.|.+|.|||..++...
T Consensus 462 IvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 462 IISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEeccCCCeEEEEEcCCCCcc
Confidence 999999999999999876443
No 53
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-36 Score=234.02 Aligned_cols=298 Identities=23% Similarity=0.419 Sum_probs=240.0
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--CC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA--DG 128 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~--dg 128 (458)
++..+.+..-.+.|+++.|+++|.+|++++.|.+++|||..++..+..+ ..+.-.+..++|.. ....++.++. |.
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth--~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTH--HSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEec--CCceEEEccCCCCC
Confidence 3445567767889999999999999999999999999999999998888 56677889999987 6666666665 88
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
+|+..++.+++.+.. +.+|...|.+++.+|-+ ..+++++.|++|++||++..++...+... .-..
T Consensus 81 tIryLsl~dNkylRY--F~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~pi 145 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRY--FPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRPI 145 (311)
T ss_pred ceEEEEeecCceEEE--cCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecC------------CCcc
Confidence 999999999888765 99999999999999998 78999999999999999988877666432 3356
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF 287 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~ 287 (458)
++|+|+ |-++|++.....|++||+|..... |...+. +........+.+.|+|||++|+.+++. .+++.
T Consensus 146 ~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkg-------PF~tf~---i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~l 214 (311)
T KOG1446|consen 146 AAFDPE-GLIFALANGSELIKLYDLRSFDKG-------PFTTFS---ITDNDEAEWTDLEFSPDGKSILLSTNASFIYLL 214 (311)
T ss_pred eeECCC-CcEEEEecCCCeEEEEEecccCCC-------CceeEc---cCCCCccceeeeEEcCCCCEEEEEeCCCcEEEE
Confidence 899998 788998888889999999987532 222222 122446788999999999988877754 69999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
|.-.+. ....+.++.+...+..-+.|+||++++++|+.||+|
T Consensus 215 DAf~G~--------------------------------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 215 DAFDGT--------------------------------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred EccCCc--------------------------------------EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 987743 444555554433233333349999999999999999
Q ss_pred EEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 368 FIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 368 ~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.+|+++++..+..+++ +.+++.++.|+|...++++++ ..+.+|-+...
T Consensus 257 ~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 257 HVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred EEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 9999999999999988 788999999999888887765 57888876544
No 54
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=271.74 Aligned_cols=290 Identities=19% Similarity=0.273 Sum_probs=243.4
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC-
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL- 180 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~- 180 (458)
.+...|.++.|+| +|+.+++++.++.+++|+....+......+.+|...|..++|+|++ .++++++.|++|++||+
T Consensus 157 ~~~~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcC--CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeecc
Confidence 3478899999999 9999999999999999999666521223368899999999999999 68999999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
..+..++.+.. |...|++++|+|+ ++++++|+.|++|++||+++++. ......|
T Consensus 234 ~~~~~~~~l~g----------H~~~v~~~~f~p~-g~~i~Sgs~D~tvriWd~~~~~~---------------~~~l~~h 287 (456)
T KOG0266|consen 234 DDGRNLKTLKG----------HSTYVTSVAFSPD-GNLLVSGSDDGTVRIWDVRTGEC---------------VRKLKGH 287 (456)
T ss_pred CCCeEEEEecC----------CCCceEEEEecCC-CCEEEEecCCCcEEEEeccCCeE---------------EEeeecc
Confidence 44466666654 5568999999998 49999999999999999999653 3456668
Q ss_pred ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|++++|++++.+|++++ ++.+++||+.++... +...+.++
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~------------------------------------~~~~~~~~ 331 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL------------------------------------CLKLLSGA 331 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee------------------------------------eeecccCC
Confidence 89999999999999999998 568999999885310 23444455
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce---eeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV---VNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
.....+..+.| +|++++++++..|+.+++||+..++.+..+.+|... +.+...++.++++++|+.|+.|++|++.+
T Consensus 332 ~~~~~~~~~~f-sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 332 ENSAPVTSVQF-SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred CCCCceeEEEE-CCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 44324788888 999999999999999999999999999999998764 44555678999999999999999999997
Q ss_pred cccc-ccccc-cccEEEEEEecCCcEEEeee--cCCceEEEEEec
Q 012712 417 ADRA-TLPTN-IEQVCFSIYSADYWWSKSQN--FSCSILLFEWLV 457 (458)
Q Consensus 417 ~~~~-~~~~~-~~~v~~~~~s~d~~~l~s~~--~d~~i~~w~~~~ 457 (458)
+..+ .+.+| ...+..+.++|...++++++ .|+.+++|.+-.
T Consensus 411 ~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 411 GGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred cchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 6554 67778 78899999999999999988 789999998743
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-37 Score=249.33 Aligned_cols=286 Identities=13% Similarity=0.174 Sum_probs=234.3
Q ss_pred eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177 (458)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 177 (458)
++..|..+|.-+.|++ +|++||+++.|.+..+|.+..... ...+.+.+|..+|..+.|+||. ++|++|+.|..+.+
T Consensus 219 il~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSL 295 (519)
T ss_pred hHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHheee
Confidence 3478999999999999 999999999999999999876554 2234588999999999999999 67888888889999
Q ss_pred EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
||+.++.....+... ....+.+++|.|| +..+++|+.|+.+..||+....... ..
T Consensus 296 wDv~tgd~~~~y~~~---------~~~S~~sc~W~pD-g~~~V~Gs~dr~i~~wdlDgn~~~~---------------W~ 350 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSG---------LGFSVSSCAWCPD-GFRFVTGSPDRTIIMWDLDGNILGN---------------WE 350 (519)
T ss_pred ccCCcchhhhhcccC---------cCCCcceeEEccC-CceeEecCCCCcEEEecCCcchhhc---------------cc
Confidence 999999987776522 2346899999998 7899999999999999998764221 11
Q ss_pred cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
.-....|.+++..+||+++++.. +..|++|+..+.. .....
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--------------------------------------dr~li 392 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--------------------------------------DRGLI 392 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--------------------------------------hhccc
Confidence 11235699999999999877766 5589999987631 12222
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce--eeEEEec-CCCCeEEEeecCCcEEEec
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV--VNCIEPH-PHSTVLASSGIESDIKILT 413 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~s-~~~~~l~s~~~d~~i~iw~ 413 (458)
..+. .|++.+. |.|++++++--.+..+++||++..+.++.+.||... +..-+|- -+..++++|++|+.|+||+
T Consensus 393 se~~---~its~~i-S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 393 SEEQ---PITSFSI-SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccC---ceeEEEE-cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 2232 3888888 999999999999999999999999999999998753 3333554 3457999999999999999
Q ss_pred CCccccc-ccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712 414 PNAADRA-TLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE 454 (458)
Q Consensus 414 ~~~~~~~-~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~ 454 (458)
..+++++ .+.+|...|.+++|+|.. ..+|+++.||+|+||-
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 9999876 789999999999999988 7789999999999995
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-36 Score=262.24 Aligned_cols=348 Identities=16% Similarity=0.211 Sum_probs=271.8
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..++|.|..+.++++--.|.|++||..-|.++.+ |..|.++|+.++|+|.+.++++|+.
T Consensus 13 KglsFHP~rPwILtslHsG~IQlWDYRM~tli~r---------------------FdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR---------------------FDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred cceecCCCCCEEEEeecCceeeeehhhhhhHHhh---------------------hhccCCccceeeecCCCCeEEecCC
Confidence 4578999999999999999999999998888854 8999999999999999999999999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
|-.|+||+.++.+++.++ .+|-.-|..+.|++ .-.+|+++|.|.+|+||+..+.+++.. +.+|...|.|..|+|.
T Consensus 72 DykIkVWnYk~rrclftL-~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqsr~~iav--ltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQSRKCIAV--LTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ccEEEEEecccceehhhh-ccccceeEEeeccC--CCceEEEccCCCeEEEEeccCCceEEE--EecCceEEEeeccCCc
Confidence 999999999999998888 79999999999999 999999999999999999999998877 9999999999999998
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeee--------cc-------------cCCCCcceeecceEEEEECCCCCcEEE
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTC--------RP-------------IDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~-------------~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
. .++++++-|.+|++||+...+....-.. .+ ..-.+| |...|+-++|+|. -.+|+
T Consensus 147 E-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG--HDRGVNwaAfhpT-lpliV 222 (1202)
T KOG0292|consen 147 E-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG--HDRGVNWAAFHPT-LPLIV 222 (1202)
T ss_pred c-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc--cccccceEEecCC-cceEE
Confidence 7 6899999999999999864322111000 00 011234 4457999999998 57999
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~ 299 (458)
+|+.|+.|++|.+...+.- ......+|.+.|.++-|+|...++++.++| .|++||+..
T Consensus 223 SG~DDRqVKlWrmnetKaW-------------EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k-------- 281 (1202)
T KOG0292|consen 223 SGADDRQVKLWRMNETKAW-------------EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK-------- 281 (1202)
T ss_pred ecCCcceeeEEEeccccce-------------eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc--------
Confidence 9999999999999765421 133566789999999999999999999965 799999987
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 379 (458)
+..++.++..... ...++. +|..+++++|- |+-+.+|.++...
T Consensus 282 ------------------------------Rt~v~tfrrendR--FW~laa-hP~lNLfAAgH-DsGm~VFkleREr--- 324 (1202)
T KOG0292|consen 282 ------------------------------RTSVQTFRRENDR--FWILAA-HPELNLFAAGH-DSGMIVFKLERER--- 324 (1202)
T ss_pred ------------------------------ccceeeeeccCCe--EEEEEe-cCCcceeeeec-CCceEEEEEcccC---
Confidence 4566667654443 677777 99999888775 5556677664222
Q ss_pred EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc---cccc---ccccEEEEEEecCC-cEEEeeecCCc
Q 012712 380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA---TLPT---NIEQVCFSIYSADY-WWSKSQNFSCS 449 (458)
Q Consensus 380 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---~~~~---~~~~v~~~~~s~d~-~~l~s~~~d~~ 449 (458)
+.. +. .++.|...- |..|+-+|+.+.+-. .+.. ...++.++.++|.. ..|++...|+.
T Consensus 325 -------pa~--~v--~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 325 -------PAY--AV--NGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred -------ceE--EE--cCCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 222 22 233344443 889999998875332 1222 23568889999976 44555454443
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-37 Score=233.87 Aligned_cols=287 Identities=16% Similarity=0.218 Sum_probs=231.6
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
.++||+.+++.+.|+.+|.+|.+++.|.+..||-..+|+.+-++ .+|++.|+++...- +.+.+++|+.|.++++||+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~--~s~~liTGSAD~t~kLWDv 81 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDW--DSKHLITGSADQTAKLWDV 81 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecC--CcceeeeccccceeEEEEc
Confidence 36899999999999999999999999999999999899998888 89999999999998 9999999999999999999
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEec-----CCCeEEEEeCCCCC-------ccceeeecccCCCCcceee
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDLRTGA-------ATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~ 203 (458)
++++.+... + ...+|..+.|++++ ++++.+. ..+.|.++|++... +...+.. +.
T Consensus 82 ~tGk~la~~--k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t----------~~ 147 (327)
T KOG0643|consen 82 ETGKQLATW--K-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT----------PD 147 (327)
T ss_pred CCCcEEEEe--e-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC----------Cc
Confidence 999988763 2 45789999999999 4444443 34689999998443 2222222 34
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 282 (458)
..++.+.|.|- +..|++|.+||.|.+||+++++.. ......|...|+.++++|+..++++++.+
T Consensus 148 skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~--------------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 148 SKITSALWGPL-GETIIAGHEDGSISIYDARTGKEL--------------VDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred cceeeeeeccc-CCEEEEecCCCcEEEEEcccCcee--------------eechhhhccccccccccCCcceEEecccCc
Confidence 57899999998 789999999999999999997532 22334577799999999999999999965
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
+.++||..+ ...++++.... ++++.++ +|-..+++.|+
T Consensus 213 takl~D~~t--------------------------------------l~v~Kty~te~---PvN~aai-sP~~d~VilgG 250 (327)
T KOG0643|consen 213 TAKLVDVRT--------------------------------------LEVLKTYTTER---PVNTAAI-SPLLDHVILGG 250 (327)
T ss_pred cceeeeccc--------------------------------------eeeEEEeeecc---cccceec-ccccceEEecC
Confidence 799999987 44555555443 3888888 89877777765
Q ss_pred CCCe--------------EEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 363 DCGR--------------IFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 363 ~dg~--------------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
.... .++|++-..+.+..+++|-++|++++|+|+|+..++|++||.|++...+.
T Consensus 251 GqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 251 GQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 3321 22333333355677889999999999999999999999999999986554
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.6e-36 Score=238.46 Aligned_cols=273 Identities=21% Similarity=0.330 Sum_probs=227.5
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEecCCCeEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRRVI 86 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~i~ 86 (458)
++.+++|+.||.+||||.. |+.. ..+.||.++|.+++|.-.. ..|++++.|.+++
T Consensus 115 ~~~IltgsYDg~~riWd~~-Gk~~---------------------~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~ 172 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-GKSI---------------------KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR 172 (423)
T ss_pred CceEEEeecCCeeEEEecC-CceE---------------------EEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence 6789999999999999999 7766 4588999999988885433 3599999999999
Q ss_pred EEECCCcceeeee---ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-----------------------c
Q 012712 87 LWDWKTERVKLSF---HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-----------------------G 140 (458)
Q Consensus 87 iwd~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-----------------------~ 140 (458)
+|.++.++..... ..+|...|-++...+ ++..+++|+.|..|++|+..+.. .
T Consensus 173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 9999887653322 259999999999999 99999999999999999942211 1
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
.+...+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.....+. ....+.++..+|. .++|+
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~-----------~~ksl~~i~~~~~-~~Ll~ 316 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT-----------TNKSLNCISYSPL-SKLLA 316 (423)
T ss_pred CceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-----------cCcceeEeecccc-cceee
Confidence 122347799999999999994 478999999999999999999887776 3446899999997 78999
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~ 300 (458)
+|+.|..+++||.+++. |
T Consensus 317 ~gssdr~irl~DPR~~~-----------------------------------g--------------------------- 334 (423)
T KOG0313|consen 317 SGSSDRHIRLWDPRTGD-----------------------------------G--------------------------- 334 (423)
T ss_pred ecCCCCceeecCCCCCC-----------------------------------C---------------------------
Confidence 99999999999998753 1
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCe-EE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGE-LI 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~ 378 (458)
....+.|.+|.+ .|.++.| +|.. ..|++|+.|+++++||+++.+ ++
T Consensus 335 -----------------------------s~v~~s~~gH~n--wVssvkw-sp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 335 -----------------------------SVVSQSLIGHKN--WVSSVKW-SPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred -----------------------------ceeEEeeecchh--hhhheec-CCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 112355677887 4888888 7755 467799999999999999887 99
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
..+.+|...|.++.|+ ++..|++||.|++|+|+.-.
T Consensus 383 ydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 383 YDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 9999999999999996 56789999999999998743
No 59
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.7e-35 Score=222.60 Aligned_cols=278 Identities=19% Similarity=0.209 Sum_probs=232.9
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
+.+++|...|.+++|+.+|..|++|+.|+++++|+++..+..... ..+|.+.|-.++|.|. ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEE
Confidence 457899999999999999999999999999999999877543332 3689999999999984 67899999999999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
|++.+++....... ..-.-+.|+|+| .+++.+..|..|.+.|.++.+.....+ ....+..++|+-
T Consensus 93 d~r~~k~~~~i~~~---~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~-----------~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 93 DIRSGKCTARIETK---GENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQ-----------FKFEVNEISWNN 157 (313)
T ss_pred EeccCcEEEEeecc---CcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhc-----------ccceeeeeeecC
Confidence 99999887663322 333458899999 678999999999999999887766554 333578888986
Q ss_pred CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCC
Q 012712 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMG 292 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~ 292 (458)
+ +++|+.....|.|.|......+. ...+..|.....|+.|+|+|+++|+|+.+ .+.+||++.
T Consensus 158 ~-nd~Fflt~GlG~v~ILsypsLkp---------------v~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E- 220 (313)
T KOG1407|consen 158 S-NDLFFLTNGLGCVEILSYPSLKP---------------VQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE- 220 (313)
T ss_pred C-CCEEEEecCCceEEEEecccccc---------------ccccccCCcceEEEEECCCCceEeeccccceeeccChhH-
Confidence 5 56777777789999998876652 34455678889999999999999999966 699999986
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
..+.+.+..+.-+ |+.+.| +.||++||+|++|..|-|=++
T Consensus 221 -------------------------------------LiC~R~isRldwp--VRTlSF-S~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 221 -------------------------------------LICERCISRLDWP--VRTLSF-SHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred -------------------------------------hhhheeeccccCc--eEEEEe-ccCcceeeccCccceEEeEec
Confidence 5567777777765 899998 999999999999999999999
Q ss_pred cCCeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 406 (458)
++|..+..++ +.++...++|+|...+||.++.|
T Consensus 261 etGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 261 ETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999887 67889999999999999988765
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-35 Score=222.26 Aligned_cols=273 Identities=16% Similarity=0.203 Sum_probs=226.0
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.|-|+-+|++.+|++.|.+||+||...|.++ ++..+|...|..++.+.|...+++|+.|
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~li---------------------ktYsghG~EVlD~~~s~Dnskf~s~GgD 80 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALI---------------------KTYSGHGHEVLDAALSSDNSKFASCGGD 80 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeeccccccee---------------------eeecCCCceeeeccccccccccccCCCC
Confidence 4668999999999999999999999988877 4589999999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
+.+.+||+.+|+....+ .+|.+.|+.++|.. +...+++|+.|..+++||.++....+.+.+....+.|.++....
T Consensus 81 k~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-- 155 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-- 155 (307)
T ss_pred ceEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--
Confidence 99999999999999998 89999999999998 99999999999999999999887766666888889999999876
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
+.+++|+.||+++.||++.|+....+. ..+|++++|+++ ++..++++.|+++++.|-.++++++.+
T Consensus 156 -heIvaGS~DGtvRtydiR~G~l~sDy~------------g~pit~vs~s~d-~nc~La~~l~stlrLlDk~tGklL~sY 221 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKGTLSSDYF------------GHPITSVSFSKD-GNCSLASSLDSTLRLLDKETGKLLKSY 221 (307)
T ss_pred -cEEEeeccCCcEEEEEeecceeehhhc------------CCcceeEEecCC-CCEEEEeeccceeeecccchhHHHHHh
Confidence 569999999999999999998765553 337999999998 789999999999999999999875542
Q ss_pred cCCCCCCCcCCCcccccccc--ceeEEEeCCCCcEEEEecC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 243 DFGQPADYFCPPNLIGDEQV--GITGLAFSDQSELLVSYND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
. +|.. .-...+++.....+++|++ +.+++||+...
T Consensus 222 k---------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~--------------------------- 259 (307)
T KOG0316|consen 222 K---------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE--------------------------- 259 (307)
T ss_pred c---------------ccccceeeeeeeecccceeEEeccCCceEEEEEeccc---------------------------
Confidence 2 2222 2344566777788999995 57999999874
Q ss_pred cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd 371 (458)
..+..+..+... .+.++.+ +|...-++++. ++.+..|-
T Consensus 260 -----------~~~sk~~~~~~v-~v~dl~~-hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 260 -----------TQISKLSVVSTV-IVTDLSC-HPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred -----------eeeeeeccCCce-eEEeeec-ccCccceeEec-CCceecee
Confidence 233344433332 4788888 88877777665 34455664
No 61
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=7.5e-35 Score=251.03 Aligned_cols=383 Identities=15% Similarity=0.170 Sum_probs=283.9
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC----CCceEEEEEecCCCEEEEecCCCe
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH----RGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
..+++++|+.+|+||+++.++-....+..-+-+-+++-... .+....+.+- --...++.|+|....|.+...|..
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~-~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhS 347 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL-SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHS 347 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhc-ccccccccccCcccCCceeEEEecCCCceEEEEEcCce
Confidence 45789999999999999999877665533221111110000 0111111111 112347889998999999999999
Q ss_pred EEEEECCCcceee---eeccCCCcceeEEEEccCC---------CCeEEEEEcCCCcEEEeecccccc--eeee-e----
Q 012712 85 VILWDWKTERVKL---SFHSGHNDNVFQAKIMPFT---------DDRSIVTCAADGQVRHAQILERGG--VETK-L---- 145 (458)
Q Consensus 85 i~iwd~~~~~~~~---~~~~~~~~~i~~~~~~~~~---------~~~~l~s~~~dg~i~vw~~~~~~~--~~~~-~---- 145 (458)
++|||+++-..+. .+ --|...|+.+.--|-+ ....++||+.|++|++|++..... +..+ .
T Consensus 348 lYvWDvrD~~kvgk~~s~-lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 348 LYVWDVRDVNKVGKCSSM-LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred EEEEeccccccccceeee-eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 9999998754332 22 3588888888766510 123589999999999999865211 1000 0
Q ss_pred ----------------------------ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 146 ----------------------------LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 146 ----------------------------~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
..+....+.+++.+|++ +.|++|..-|.+++|++...+....+..
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eA------ 499 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEA------ 499 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheec------
Confidence 00123468999999999 7899999999999999988776655554
Q ss_pred CcceeecceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--
Q 012712 198 RNYMTVVNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 273 (458)
|...|.|+.|+-- ..++|++++.|+-|++||+...- .+.....+|...|+++.|..+|
T Consensus 500 ----HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--------------~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 500 ----HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--------------DLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred ----ccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--------------chhhhhcccccceeEEEEeecCCc
Confidence 5668999999752 24689999999999999997642 3355677889999999999887
Q ss_pred cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc---cceeeeeEEEE
Q 012712 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH---RNCVTVKGVNF 350 (458)
Q Consensus 274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~ 350 (458)
..+++++.++...|+...... ....+..| ....++..++.
T Consensus 562 ~~MiscGADksimFr~~qk~~-------------------------------------~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKAS-------------------------------------SGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred eEEEeccCchhhheehhcccc-------------------------------------CceeccccccccccceEEEeee
Confidence 566777766555555443110 01111111 12235889998
Q ss_pred ecCCCcEEEEecCCCeEEEEEecCCeEEEEeec---CCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-cccccc
Q 012712 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA---DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNI 426 (458)
Q Consensus 351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~ 426 (458)
.|..+++++++.|..|+||++++++..+.|++ |.+....+...|.|-|||+...|+++.++|..++++. ++.+|.
T Consensus 605 -dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 605 -DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred -CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 99999999999999999999999999999975 6677888999999999999999999999999999987 788999
Q ss_pred ccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 427 EQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+-|+.+.|++|.+.|++.+.||.|+||..-
T Consensus 684 E~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 684 EAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred hheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999999999999999999863
No 62
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.1e-35 Score=244.84 Aligned_cols=302 Identities=16% Similarity=0.201 Sum_probs=234.5
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
....+++|+..|.++++.|.|-.|++|+.|-+|++||+..... ...+.......|.++.|++ .+..|++.+...
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--TGDQILVVSGSA 236 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC--CCCeEEEEecCc
Confidence 3446789999999999999999999999999999999875432 2333344556899999999 888888888888
Q ss_pred cEEEeecccccceee----------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCC
Q 012712 129 QVRHAQILERGGVET----------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDR 197 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 197 (458)
..+|+|-........ ...++|...+++.+|+|.....|++++.||++++||+...+. .+.+.......
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g- 315 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG- 315 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC-
Confidence 999998644332211 124689999999999999988999999999999999976543 33443322221
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc--ceeEEEeCCCCcE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV--GITGLAFSDQSEL 275 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~ 275 (458)
...+++.++|+|+ +.+||+|+.||.|.+|+.+...... ...+...|.. .|+++.||++|++
T Consensus 316 ----~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p------------~~~vk~AH~~g~~Itsi~FS~dg~~ 378 (641)
T KOG0772|consen 316 ----KRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRP------------VMKVKDAHLPGQDITSISFSYDGNY 378 (641)
T ss_pred ----cccCceeeecCCC-cchhhhcccCCceeeeecCCccccc------------ceEeeeccCCCCceeEEEeccccch
Confidence 3447899999998 7899999999999999986543211 1233445555 8999999999999
Q ss_pred EEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712 276 LVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (458)
Q Consensus 276 l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (458)
|++-+ ++++++||++..+. ++....+-.+...-+.++| ||+
T Consensus 379 LlSRg~D~tLKvWDLrq~kk-------------------------------------pL~~~tgL~t~~~~tdc~F-SPd 420 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKK-------------------------------------PLNVRTGLPTPFPGTDCCF-SPD 420 (641)
T ss_pred hhhccCCCceeeeecccccc-------------------------------------chhhhcCCCccCCCCcccc-CCC
Confidence 99987 66899999987532 3333333333333466777 999
Q ss_pred CcEEEEecC------CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 355 CEYVVSGSD------CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 355 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
.++|++|+. .|++.+||..+.+.+..+.-....|..+.|+|.-+.|..|+.||++++|
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 999999863 4789999999999999888778889999999999999999999999986
No 63
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=229.28 Aligned_cols=275 Identities=18% Similarity=0.277 Sum_probs=235.9
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEE
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVI 86 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~ 86 (458)
-|+|-.|++++.||.=.+-+-+||..+. +|.||++.|.+..+..+....|+++.|=+-+
T Consensus 26 tp~g~flisa~kd~~pmlr~g~tgdwig---------------------tfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGDTGDWIG---------------------TFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred CCCceEEEEeccCCCchhccCCCCCcEE---------------------eeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 3678889999999999999999999884 5999999999999999988999999999999
Q ss_pred EEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712 87 LWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 87 iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (458)
|||.-+|..++.+ .|..-|.+++|+. |.++|++|+.+..++++|++..+..+ ..+.+|++.|..+.|.... +.+
T Consensus 85 vw~a~tgdelhsf--~hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD-~~i 158 (334)
T KOG0278|consen 85 VWDAVTGDELHSF--EHKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHED-KCI 158 (334)
T ss_pred hhhhhhhhhhhhh--hhhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccC-ceE
Confidence 9999999999998 6888999999999 99999999999999999998776544 3488999999999999877 678
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (458)
++++.|++|++||.+++..++.+. ...+|+++..+++ +.++. -...+.|.+||..+...++...+
T Consensus 159 LSSadd~tVRLWD~rTgt~v~sL~-----------~~s~VtSlEvs~d-G~ilT-ia~gssV~Fwdaksf~~lKs~k~-- 223 (334)
T KOG0278|consen 159 LSSADDKTVRLWDHRTGTEVQSLE-----------FNSPVTSLEVSQD-GRILT-IAYGSSVKFWDAKSFGLLKSYKM-- 223 (334)
T ss_pred EeeccCCceEEEEeccCcEEEEEe-----------cCCCCcceeeccC-CCEEE-EecCceeEEeccccccceeeccC--
Confidence 888999999999999999998887 4457999999998 55554 44567899999999876554332
Q ss_pred CCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
...|.+...+|+...+++|+++ .++.||..++.
T Consensus 224 --------------P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge-------------------------------- 257 (334)
T KOG0278|consen 224 --------------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE-------------------------------- 257 (334)
T ss_pred --------------ccccccccccCCCceEEecCcceEEEEEeccCCc--------------------------------
Confidence 3568888999999888888866 79999999853
Q ss_pred CcccccCceee-cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 326 NTDVRIAPQVY-KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 326 ~~~~~~~~~~~-~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
.+..+ ++|.++ |.++.| +|||...++|++||+|+||.+..++..
T Consensus 258 ------Ei~~~nkgh~gp--VhcVrF-SPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 258 ------EIGSYNKGHFGP--VHCVRF-SPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ------eeeecccCCCCc--eEEEEE-CCCCceeeccCCCceEEEEEecCCCch
Confidence 33333 778885 999999 999999999999999999998766543
No 64
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7e-35 Score=232.62 Aligned_cols=306 Identities=14% Similarity=0.210 Sum_probs=235.1
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeeccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILE 137 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~ 137 (458)
-|.+-|.++... ++.++||++||.+++||.. |+....+ .+|.++|.+++|.-.. ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 378888888877 7799999999999999965 6776766 7999999988886521 233599999999999999987
Q ss_pred ccceeee--eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 138 RGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 138 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
++..... ...+|...|.++...+++ ..+++|+.|.+|.+|+..+. ....+. ...--+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~-~~~~~E-----------------~~s~~r-- 237 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETD-EEDELE-----------------SSSNRR-- 237 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCC-cccccc-----------------ccchhh--
Confidence 7654332 234999999999999999 78999999999999993322 111111 000000
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~ 294 (458)
+..+. ..+......|.....+|..+|.++.|++ ...+.+++ |.+|+.||+.++.
T Consensus 238 ------------------rk~~~-----~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~- 292 (423)
T KOG0313|consen 238 ------------------RKKQK-----REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG- 292 (423)
T ss_pred ------------------hhhhh-----hhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-
Confidence 00000 0001112235567788999999999999 55677777 5589999999853
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
....+.+... ++++.+ +|..++|++|+.|..+++||.++
T Consensus 293 -------------------------------------~~~~~~~~ks---l~~i~~-~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 293 -------------------------------------LKSTLTTNKS---LNCISY-SPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred -------------------------------------ceeeeecCcc---eeEeec-ccccceeeecCCCCceeecCCCC
Confidence 3344444443 788998 99999999999999999999876
Q ss_pred Ce---EEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccc--ccccccccccEEEEEEecCCcEEEeeecCC
Q 012712 375 GE---LIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD--RATLPTNIEQVCFSIYSADYWWSKSQNFSC 448 (458)
Q Consensus 375 ~~---~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~ 448 (458)
+. ...++.+|.+.|.++.|+|... +|++++.|+++++||+.+.. +..+.+|...|.++.|. ++.++++|+.|+
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~ 410 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADN 410 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcc
Confidence 52 4467899999999999999766 68899999999999998765 45889999999999998 677889999999
Q ss_pred ceEEEEEe
Q 012712 449 SILLFEWL 456 (458)
Q Consensus 449 ~i~~w~~~ 456 (458)
.|++++..
T Consensus 411 ~l~i~~~~ 418 (423)
T KOG0313|consen 411 KLRIFKGS 418 (423)
T ss_pred eEEEeccc
Confidence 99999753
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-35 Score=260.72 Aligned_cols=258 Identities=20% Similarity=0.314 Sum_probs=207.2
Q ss_pred eeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-------------------------------------
Q 012712 52 GIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE------------------------------------- 93 (458)
Q Consensus 52 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~------------------------------------- 93 (458)
...+.+. .|++.|.++.||+||+|||+||.|+.|+||.+...
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4556677 99999999999999999999999999999987650
Q ss_pred -----------------------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712 94 -----------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (458)
Q Consensus 94 -----------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 150 (458)
+++.. ..+|.+.|.++.|+ ..++|++++.|.+|++|++...+++.. ..|.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~e-f~GHt~DILDlSWS---Kn~fLLSSSMDKTVRLWh~~~~~CL~~---F~Hn 409 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCE-FKGHTADILDLSWS---KNNFLLSSSMDKTVRLWHPGRKECLKV---FSHN 409 (712)
T ss_pred cccccccCCccccCCCccccccccchhh-hhccchhheecccc---cCCeeEeccccccEEeecCCCcceeeE---EecC
Confidence 00112 26899999999999 577999999999999999998887764 4599
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
+.|+|++|+|-+.++|++|+-||.|+||++...+.+.-..+. .-|++++|.|+ |+..++|+.+|.+++
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~Pd-Gk~avIGt~~G~C~f 477 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPD-GKGAVIGTFNGYCRF 477 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccC-CceEEEEEeccEEEE
Confidence 999999999988899999999999999999887765544432 25899999998 799999999999999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
|+....+.......... ......+ ..|+++.|.|.. ++|++..|..|+|||.++
T Consensus 478 Y~t~~lk~~~~~~I~~~------~~Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~----------------- 533 (712)
T KOG0283|consen 478 YDTEGLKLVSDFHIRLH------NKKKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD----------------- 533 (712)
T ss_pred EEccCCeEEEeeeEeec------cCccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc-----------------
Confidence 99998876443222110 0011112 389999999864 488888888999999976
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
..++..|+|..+...-....| +.||++|+++++|..|++|+...
T Consensus 534 ---------------------~~lv~KfKG~~n~~SQ~~Asf-s~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 534 ---------------------KDLVHKFKGFRNTSSQISASF-SSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------------------hhhhhhhcccccCCcceeeeE-ccCCCEEEEeecCceEEEEeCCC
Confidence 456677777776545556666 89999999999999999999743
No 66
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.6e-34 Score=245.78 Aligned_cols=404 Identities=16% Similarity=0.175 Sum_probs=286.9
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEecCCCe
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGSDDRR 84 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~ 84 (458)
++.-+|+.|+.+..|.++.-.++ ++..+..+.||.+.|.+++|...+ -+||++|.|..
T Consensus 157 ~~~~lla~Ggs~~~v~~~s~~~d-------------------~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~y 217 (764)
T KOG1063|consen 157 NKTFLLACGGSKFVVDLYSSSAD-------------------SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRY 217 (764)
T ss_pred CCcEEEEecCcceEEEEeccCCc-------------------ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceE
Confidence 34445777888887877766533 345668899999999999998755 48999999999
Q ss_pred EEEEECCCcc------------------------eee------eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee
Q 012712 85 VILWDWKTER------------------------VKL------SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ 134 (458)
Q Consensus 85 i~iwd~~~~~------------------------~~~------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~ 134 (458)
||||.+.-+. .+. .++.+|.+.|+++.|+| .+..|++++.|.++.+|.
T Consensus 218 IRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~ 295 (764)
T KOG1063|consen 218 IRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWK 295 (764)
T ss_pred EEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEe
Confidence 9999864322 011 22469999999999999 999999999999999999
Q ss_pred cccccceee-----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 135 ILERGGVET-----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 135 ~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
..+...+.. -...+.........|+|++ +.+++-+.-|..++|....... ........| |...|..+
T Consensus 296 pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~-----w~~~~~iSG--H~~~V~dv 367 (764)
T KOG1063|consen 296 PDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTF-----WTQEPVISG--HVDGVKDV 367 (764)
T ss_pred cCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccc-----eeecccccc--ccccceee
Confidence 876643321 1123344567889999999 7889999999999998322211 111111233 55579999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc-EEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF-IYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~-i~i~~ 288 (458)
+|+|. |.++++.+.|.+-|+|-.-..+ ..-.++ ...+-|...++|+++-+....+++|.+.+ +++|+
T Consensus 368 ~W~ps-GeflLsvs~DQTTRlFa~wg~q-~~wHEi----------aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 368 DWDPS-GEFLLSVSLDQTTRLFARWGRQ-QEWHEI----------ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFE 435 (764)
T ss_pred eecCC-CCEEEEeccccceeeecccccc-cceeee----------cccccccccceeeehccCCceeeecccceeeeeec
Confidence 99998 7899999999999998765222 111122 22334677899999999766777777764 78998
Q ss_pred ccCCC----------CCCCC----CCCCccccccc-cccCC----CCcc------cc-C----CCCCC--------cccc
Q 012712 289 QDMGL----------GPNPP----PSSPVSTRSEA-SEMGS----DHTS------AA-S----PSTAN--------TDVR 330 (458)
Q Consensus 289 ~~~~~----------~~~~~----~~~~~~~~~~~-~~~~~----~~~~------~~-~----~~~~~--------~~~~ 330 (458)
....- ..... .+......+.+ ..+.+ ++.. .. . ..... ....
T Consensus 436 aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLw 515 (764)
T KOG1063|consen 436 APKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLW 515 (764)
T ss_pred CcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccc
Confidence 65321 00000 00000000000 01110 0000 00 0 00000 1123
Q ss_pred cCceeecCccceeeeeEEEEecCCCcEEEEecCC-----CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712 331 IAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-----GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 331 ~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 405 (458)
+..+++.||... |.+++. +|+|+++|+++.. ..|++|+..+...++.+.+|+-.|+.|+|||||++|++++.
T Consensus 516 PEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR 592 (764)
T KOG1063|consen 516 PEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR 592 (764)
T ss_pred hhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec
Confidence 456677888885 999998 9999999998754 46999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCccccc-----ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 406 ESDIKILTPNAADRA-----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 406 d~~i~iw~~~~~~~~-----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
|.++.+|+....... ....|..-|++..|+|+++++||++.|..|+||..
T Consensus 593 DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 593 DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE 647 (764)
T ss_pred CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence 999999998655332 35677777999999999999999999999999975
No 67
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=249.84 Aligned_cols=352 Identities=58% Similarity=0.982 Sum_probs=296.6
Q ss_pred cccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC
Q 012712 36 NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF 115 (458)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~ 115 (458)
.|...+.++...+.++.+...|.+|.+.|..+.|...|..|++|+.|..|.+||+..+..+..+..+|...|....|.|+
T Consensus 117 ~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 117 RFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF 196 (559)
T ss_pred HHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC
Confidence 45557778888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEEEcCCCcEEEeeccccccee-eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712 116 TDDRSIVTCAADGQVRHAQILERGGVE-TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (458)
Q Consensus 116 ~~~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (458)
.+...+++++.||.+++=.+...+... +..+..|.++|..++.-|+.++-|++++.|+.+.-+|++++.+...+.+...
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~ 276 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA 276 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence 888999999999999998876554433 5557889999999999999999999999999999999999988777765443
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-C
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S 273 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 273 (458)
... .......++.+|.+.+.+++++.|-.+++||.+....... ..++..+++.++.......|++++|+.+ +
T Consensus 277 ~~~----~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~---n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 277 DEK----ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEEN---NGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred CCc----cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccc---cchhhhcCCccccccCcccceeEEecCCcc
Confidence 221 1235789999999888999999999999999987654322 3366778888888877889999999955 5
Q ss_pred cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
.+|++..+..|++|....+....+.+..+. .....+.+++|.+..+|.++.||.|
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~-------------------------~~~~k~vYKGHrN~~TVKgVNFfGP 404 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPR-------------------------EQYVKRVYKGHRNSRTVKGVNFFGP 404 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcch-------------------------hhccchhhcccccccccceeeeccC
Confidence 788888888999996655443333221111 0223344999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
...|+++|++-|.|.||+-.+++.++.+++....|+||.-+|.-..||+.|-|..|+||...+.+.
T Consensus 405 rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 405 RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 999999999999999999999999999998777999999999999999999999999999865443
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=218.55 Aligned_cols=290 Identities=16% Similarity=0.158 Sum_probs=235.8
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
+.+|..+++.+.|+. +|.+|++|+.|....+|-..+++.+-+ +.+|++.|.++..+.+. ..+++|+.|.++++||
T Consensus 6 l~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~nGerlGt--y~GHtGavW~~Did~~s-~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLNGERLGT--YDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWD 80 (327)
T ss_pred cccCccccceEEecC--CCcEEEEecCCCCceEEEecCCceeee--ecCCCceEEEEEecCCc-ceeeeccccceeEEEE
Confidence 479999999999999 999999999999999999888888877 89999999999999988 6899999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-----CCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
+++|+.+..+. ...+|..+.|+++ +++++... ..+.|.++|++....... ...|.
T Consensus 81 v~tGk~la~~k-----------~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~--------s~ep~ 140 (327)
T KOG0643|consen 81 VETGKQLATWK-----------TNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDID--------SEEPY 140 (327)
T ss_pred cCCCcEEEEee-----------cCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhc--------ccCce
Confidence 99999988887 4557999999997 56666654 346799999986532110 11122
Q ss_pred ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
.....+...++.+.|.|-+++|++|. ++.|.+||+.++. +.+
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------------------------------------~~v 183 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------------------------------------ELV 183 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------------------------------------eee
Confidence 33344568899999999999999998 5589999999863 233
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc-----
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD----- 408 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~----- 408 (458)
..-..|.. .|+.+++ ++|..++++++.|.+-++||..+.+.++++.. ..+|++.+++|....++.|+....
T Consensus 184 ~s~~~h~~--~Ind~q~-s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTT 259 (327)
T KOG0643|consen 184 DSDEEHSS--KINDLQF-SRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTT 259 (327)
T ss_pred echhhhcc--ccccccc-cCCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeee
Confidence 34445555 4899998 99999999999999999999999999999874 568999999998777776653221
Q ss_pred ---------EEEecCCcc-cccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 409 ---------IKILTPNAA-DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 409 ---------i~iw~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
-++|++-.. +...+.+|.++|++++|+|||+..++|++||.|++..+
T Consensus 260 T~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 260 TSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF 316 (327)
T ss_pred ecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence 223333322 34478899999999999999999999999999998754
No 69
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.1e-33 Score=238.24 Aligned_cols=403 Identities=16% Similarity=0.189 Sum_probs=286.7
Q ss_pred CCCCCCCCC---CeEEEeeCCCcEEEEEccccccccc----cccccccc-----c-ccceEEeeeeeEeecCCCceEEEE
Q 012712 2 DDASNNNNN---KRARTSVDKALVDVWLRELGQLSTR----NFALRRRA-----S-EDLVLRLGIYAKLDKHRGCVNTVS 68 (458)
Q Consensus 2 ~~~~~~~~~---~~l~~~~~d~~i~iw~~~~g~~~~~----~~~~~~~~-----~-~~~~~~~~~~~~~~~h~~~v~~~~ 68 (458)
+++.|...+ -+|++++.|..||||.+.-+..... .+...... . .....++.....+.||++-|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 344444433 4799999999999999876553321 11111000 0 001112233345679999999999
Q ss_pred EecCCCEEEEecCCCeEEEEECCCccee----eee--ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-ccce
Q 012712 69 FNTDGDILISGSDDRRVILWDWKTERVK----LSF--HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE-RGGV 141 (458)
Q Consensus 69 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~--~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~-~~~~ 141 (458)
|+|.+..|++++.|.++.+|..++..-+ .++ ..+.....+...|+| +++.+++-+.-|..++|.... ....
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC--CCCEEEEecccCcEEEEeccCcccee
Confidence 9999999999999999999987765221 111 133455688999999 999999999999999999333 2234
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
+...+.+|.+.|+.++|+|.| .+|++.+.|.+-|++-.- ++... .++....+- |...++|++|-+. ...|++
T Consensus 353 ~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~w-g~q~~---wHEiaRPQi--HGyDl~c~~~vn~-~~~FVS 424 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARW-GRQQE---WHEIARPQI--HGYDLTCLSFVNE-DLQFVS 424 (764)
T ss_pred eccccccccccceeeeecCCC-CEEEEeccccceeeeccc-ccccc---eeeeccccc--ccccceeeehccC-Cceeee
Confidence 445578999999999999999 689999999999998654 22211 111111111 4557899999985 578999
Q ss_pred ecCCCeEEEEecCCCc-----------cCCC--c---------------cC-------------------CCCCCCcCC-
Q 012712 222 AGSDEYTRLYDIRKYK-----------WDGS--T---------------DF-------------------GQPADYFCP- 253 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~-----------~~~~--~---------------~~-------------------~~~~~~~~~- 253 (458)
|.....+|+|+....- .... . .+ ..|.....|
T Consensus 425 gAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP 504 (764)
T KOG1063|consen 425 GADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPP 504 (764)
T ss_pred cccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCC
Confidence 9999999999873210 0000 0 00 000000000
Q ss_pred -------------CccccccccceeEEEeCCCCcEEEEecCC------cEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 254 -------------PNLIGDEQVGITGLAFSDQSELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 254 -------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
.+..-+|...|.+++.+|+|+++|+++.. .|++|+..+
T Consensus 505 ~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----------------------- 561 (764)
T KOG1063|consen 505 TEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----------------------- 561 (764)
T ss_pred hHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc-----------------------
Confidence 11223577899999999999999998732 399999887
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE----EEEeecCCceeeE
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL----IRVIEADRHVVNC 390 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~ 390 (458)
....+.+.+|.- +|+.++| ||||+||++.+.|.++.+|....... ....+.|..-|.+
T Consensus 562 ---------------W~~~~~L~~HsL--TVT~l~F-Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWd 623 (764)
T KOG1063|consen 562 ---------------WLQVQELEGHSL--TVTRLAF-SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWD 623 (764)
T ss_pred ---------------hhhhheecccce--EEEEEEE-CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEE
Confidence 344556778877 5999999 99999999999999999999754322 2336789999999
Q ss_pred EEecCCCCeEEEeecCCcEEEecCCcc--ccc---ccccccccEEEEEEecCC-----cEEEeeecCCceEEEEE
Q 012712 391 IEPHPHSTVLASSGIESDIKILTPNAA--DRA---TLPTNIEQVCFSIYSADY-----WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 391 ~~~s~~~~~l~s~~~d~~i~iw~~~~~--~~~---~~~~~~~~v~~~~~s~d~-----~~l~s~~~d~~i~~w~~ 455 (458)
+.|+|+++++||+|.|++|++|..... +.. ....+...|++++|.|-- ..++.|-..|.|.+|.+
T Consensus 624 csW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 624 CSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred cccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEec
Confidence 999999999999999999999998876 222 345677789999987632 46788999999999985
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=238.32 Aligned_cols=285 Identities=17% Similarity=0.208 Sum_probs=236.8
Q ss_pred CCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
.+.|.+++|+|... -+|+.+. -.+.||+..+......+ ......++++.|.. ||++|+.|...|.|+++|..+..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSRV 101 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeec--CCeEEEccCCcCcEEEeccccHH
Confidence 46899999999553 2444444 46999999887776666 56788999999999 99999999999999999965533
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
.+. .+.+|+.++..+.|+|++..+|++|+.|+.+++||+.+......+. + +...|.|.+|+|.++.++
T Consensus 102 iLR--~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--------~--htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 102 ILR--QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--------G--HTDYVRCGDISPANDHIV 169 (487)
T ss_pred HHH--HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec--------C--CcceeEeeccccCCCeEE
Confidence 333 3889999999999999998999999999999999999887422222 2 566899999999888899
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~ 299 (458)
++|+.||.|++||++... .....-.|..+|..+.+-|.|..+++++.+.+++||+.++
T Consensus 170 vtGsYDg~vrl~DtR~~~---------------~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------- 227 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT---------------SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------- 227 (487)
T ss_pred EecCCCceEEEEEeccCC---------------ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence 999999999999999863 1223345788999999999999999999999999999875
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 379 (458)
++.+.....|.. +|+|+++ ..++..|++|+-|+.+++||+.+.+.+.
T Consensus 228 ------------------------------~qll~~~~~H~K--tVTcL~l-~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 228 ------------------------------GQLLTSMFNHNK--TVTCLRL-ASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred ------------------------------ceehhhhhcccc--eEEEEEe-ecCCceEeecccccceEEEEccceEEEE
Confidence 344455555666 4999998 7899999999999999999998888888
Q ss_pred EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 380 VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 380 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.+. ..++|.+++.+|+++.++.|..||.+.+=+....
T Consensus 275 s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 275 SWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred eee-cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 886 5689999999999999999999999888755443
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=241.86 Aligned_cols=289 Identities=20% Similarity=0.271 Sum_probs=235.6
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+. ....+.+..++|+++.|.+ ++..+++++.|+.++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEEeecCCCcee
Confidence 3456788999999999999988999999999999999876551 2233367788999999999 999999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
+|++...+...+ +.+|++.|+++.|.... ..+++|+.|.+|++||+....+.+.+. ....+..++.
T Consensus 245 ~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-----------~~S~cnDI~~ 310 (459)
T KOG0288|consen 245 LWNVDSLRLRHT--LSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-----------PGSQCNDIVC 310 (459)
T ss_pred eeeccchhhhhh--hcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-----------ccccccceEe
Confidence 999998887766 88999999999999877 458999999999999999987776654 2334667776
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEcc
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQD 290 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~ 290 (458)
++ ..+++|..|++|++||.++....... +-.+.|+++..+++|..|.+++ ++.+.+.|+.
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv----------------~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRSV----------------PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLR 371 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeEe----------------ecCcceeeEeeccCCeEEeeecCCCceeeeecc
Confidence 63 57899999999999999987643221 1245899999999998777777 7799999998
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+......+ .-.+.......+.+.| ||++.|+++|+.||.|+||
T Consensus 372 t~eI~~~~------------------------------------sA~g~k~asDwtrvvf-Spd~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 372 TKEIRQTF------------------------------------SAEGFKCASDWTRVVF-SPDGSYVAAGSADGSVYIW 414 (459)
T ss_pred cccEEEEe------------------------------------eccccccccccceeEE-CCCCceeeeccCCCcEEEE
Confidence 74322211 1112222223677887 9999999999999999999
Q ss_pred EecCCeEEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 371 KKKGGELIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 371 d~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 415 ~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 415 SVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999988876443 599999999999999999999999994
No 72
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-34 Score=248.28 Aligned_cols=404 Identities=14% Similarity=0.111 Sum_probs=274.2
Q ss_pred CCCCCCCCCeEEEee--CCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 3 DASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~--~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
.++|+++|+++|||- ..-.+++|++.+...+ ..|..|+-.|+|++|+|.++|+++.+
T Consensus 83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vV---------------------AEfvdHKY~vtcvaFsp~~kyvvSVG 141 (1080)
T KOG1408|consen 83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVV---------------------AEFVDHKYNVTCVAFSPGNKYVVSVG 141 (1080)
T ss_pred EEEEcCCCcEEEecccCCCccceeeeeccccch---------------------hhhhhccccceeeeecCCCcEEEeec
Confidence 478999999999986 6677999999966544 45889999999999999999999876
Q ss_pred C--CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee-eec-----------
Q 012712 81 D--DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET-KLL----------- 146 (458)
Q Consensus 81 ~--d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~-~~~----------- 146 (458)
. |-.|.+||++.+..... ..-...|..++|+. |+.+++|++. ..|++|.+..++.... ..+
T Consensus 142 sQHDMIVnv~dWr~N~~~as--nkiss~Vsav~fsE--dgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr 216 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNSSGAS--NKISSVVSAVAFSE--DGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLR 216 (1080)
T ss_pred cccceEEEhhhhhhcccccc--cccceeEEEEEEcc--CCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccc
Confidence 5 55778898876544333 23456899999999 9999999885 6899999876552100 000
Q ss_pred -----------------------cc-----------------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712 147 -----------------------GK-----------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (458)
Q Consensus 147 -----------------------~~-----------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (458)
.+ .+...+||+.+. .++++|+.+|.|++|+..+....
T Consensus 217 ~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~---r~I~cgCa~g~vrlFnp~tL~y~ 293 (1080)
T KOG1408|consen 217 FNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSS---RLIACGCAKGMVRLFNPETLDYA 293 (1080)
T ss_pred cchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeec---ceEEEeeccceeeecCcchhhhc
Confidence 00 112234555554 57899999999999998876554
Q ss_pred ceeeecccCC------------C--CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcC
Q 012712 187 ELFTCRPIDD------------R--RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFC 252 (458)
Q Consensus 187 ~~~~~~~~~~------------~--~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (458)
.++....... . .....-....++.|+|. ...+.+...|..+++||++..+....
T Consensus 294 ~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk----------- 361 (1080)
T KOG1408|consen 294 GTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGK----------- 361 (1080)
T ss_pred cccccccccccchhhcccccccccccCcccCCceeEEEecCC-CceEEEEEcCceEEEEeccccccccc-----------
Confidence 4433211100 0 00001112457789987 57888899999999999998765433
Q ss_pred CCccccccccceeEEEeCC------------CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 253 PPNLIGDEQVGITGLAFSD------------QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
...+-.|...|+.+.--| .+.++.+.+|++|++|++........+................+...+.
T Consensus 362 -~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 -CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred -eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 112223445555554333 3445555558899999998754333322111111111111111111110
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecC---CC
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP---HS 397 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~---~~ 397 (458)
.......-.......+.+.. .+++++. +|+|++||+|..-|++++|++...+....+.+|...|.++.+|. ..
T Consensus 441 ~d~~~~~fdka~~s~~d~r~---G~R~~~v-Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRF---GFRALAV-SPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhccCCcccccchhhcCccc---ceEEEEE-CCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 00000000011112222222 3899998 99999999999999999999999999999999999999999984 35
Q ss_pred CeEEEeecCCcEEEecCCccc--ccccccccccEEEEEEecCC--cEEEeeecCCceEE
Q 012712 398 TVLASSGIESDIKILTPNAAD--RATLPTNIEQVCFSIYSADY--WWSKSQNFSCSILL 452 (458)
Q Consensus 398 ~~l~s~~~d~~i~iw~~~~~~--~~~~~~~~~~v~~~~~s~d~--~~l~s~~~d~~i~~ 452 (458)
++||+++.|..|+|||+...- ..++.+|...|+++.|...| ..+++++.|..|.+
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF 575 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF 575 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe
Confidence 799999999999999998763 34788899999999999998 77889999988754
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=232.32 Aligned_cols=286 Identities=15% Similarity=0.184 Sum_probs=235.2
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeee-------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSF-------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
+.+..+-|..|||||++|++|+.||.|.+|+..+|+....+ ..-+..+|.|+.|+. |.+.|++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEMLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHhhccCcCCcEE
Confidence 56677899999999999999999999999999998764433 134778999999999 999999999999999
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
+|.+.++.++... -..|+..|+++.|+.|+ ..+++++.|.++++.-+..|++.+.++. |...|+...|
T Consensus 289 vWri~tG~ClRrF-drAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrG----------HsSyvn~a~f 356 (508)
T KOG0275|consen 289 VWRIETGQCLRRF-DRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRG----------HSSYVNEATF 356 (508)
T ss_pred EEEEecchHHHHh-hhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcC----------ccccccceEE
Confidence 9999999988762 23899999999999999 5789999999999999999999988864 5557999999
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
.++ |+.+++++.||+|++|+.++.+.... |-|-+
T Consensus 357 t~d-G~~iisaSsDgtvkvW~~KtteC~~T---------------------------fk~~~------------------ 390 (508)
T KOG0275|consen 357 TDD-GHHIISASSDGTVKVWHGKTTECLST---------------------------FKPLG------------------ 390 (508)
T ss_pred cCC-CCeEEEecCCccEEEecCcchhhhhh---------------------------ccCCC------------------
Confidence 998 79999999999999999988763222 11100
Q ss_pred CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712 292 GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (458)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd 371 (458)
....|+++..+..+-..++.+...++++|.+
T Consensus 391 -------------------------------------------------~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 391 -------------------------------------------------TDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred -------------------------------------------------CcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 0001333333233445677777888999999
Q ss_pred ecCCeEEEEeecC---CceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecC
Q 012712 372 KKGGELIRVIEAD---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 372 ~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d 447 (458)
+ .|+.++.+... .+.-.+.+.||.|.++.+.++|+.++.+.+.+|.+. .+.-|...+..++-+|..+.||+-++|
T Consensus 422 ~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED 500 (508)
T KOG0275|consen 422 M-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED 500 (508)
T ss_pred c-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc
Confidence 8 68888888532 244556788999999999999999999999988765 667788889999999999999999999
Q ss_pred CceEEEE
Q 012712 448 CSILLFE 454 (458)
Q Consensus 448 ~~i~~w~ 454 (458)
|.+++|.
T Consensus 501 gllKLWk 507 (508)
T KOG0275|consen 501 GLLKLWK 507 (508)
T ss_pred chhhhcC
Confidence 9999995
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=235.03 Aligned_cols=289 Identities=20% Similarity=0.279 Sum_probs=233.9
Q ss_pred eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++...+ ..|.+.|..+++. ...+++++.|.+|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~----~~~~~tvgdDKtv 131 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVT----QTSFFTVGDDKTV 131 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEec----ccceEEecCCcce
Confidence 4556789999999999999977 78999999999999999999998888 8999999999995 3789999999999
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
+.|.+... ...+ +. -...+..+.-+..+ ..+++++. .|.|||.+...+++.+.. ....+.++.
T Consensus 132 K~wk~~~~-p~~t--il-g~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smsw----------G~Dti~svk 194 (433)
T KOG0268|consen 132 KQWKIDGP-PLHT--IL-GKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSW----------GADSISSVK 194 (433)
T ss_pred eeeeccCC-ccee--ee-cccccccccccccc-ccccccCc--eeeecccccCCccceeec----------CCCceeEEe
Confidence 99998653 2222 22 23455666666655 67888886 489999998888888775 334689999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEc
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQ 289 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~ 289 (458)
|+|-...+|++|+.|+.|.+||+++...+....+ ...-+.++|+|++-.++++++| .++.||+
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~----------------~mRTN~IswnPeafnF~~a~ED~nlY~~Dm 258 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVIL----------------TMRTNTICWNPEAFNFVAANEDHNLYTYDM 258 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceeee----------------eccccceecCccccceeeccccccceehhh
Confidence 9998778899999999999999999874433111 2355789999988788888876 7999999
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
+.- ..+...+.+|.+. |.++.| +|.|+-+++|+.|.+|+|
T Consensus 259 R~l-------------------------------------~~p~~v~~dhvsA--V~dVdf-sptG~EfvsgsyDksIRI 298 (433)
T KOG0268|consen 259 RNL-------------------------------------SRPLNVHKDHVSA--VMDVDF-SPTGQEFVSGSYDKSIRI 298 (433)
T ss_pred hhh-------------------------------------cccchhhccccee--EEEecc-CCCcchhccccccceEEE
Confidence 864 3456777888886 999999 999999999999999999
Q ss_pred EEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 370 WKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 370 wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
|....+.....+.. --..|.++.||.|.+++++||+|+.|++|.....+
T Consensus 299 f~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 299 FPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99987654433321 12469999999999999999999999999876543
No 75
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-34 Score=215.21 Aligned_cols=282 Identities=16% Similarity=0.233 Sum_probs=221.8
Q ss_pred EEEEEecC-CCEEEEec-------CCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 65 NTVSFNTD-GDILISGS-------DDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 65 ~~~~~s~~-~~~l~s~~-------~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
.++.|||- .++||.+. ..|.+.|-++.....+.... -.-...+..++|++. ..+.+++++.||.+++||.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEecc
Confidence 47889982 23444332 25789999986444333321 235678999999983 5677889999999999997
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
..... +...++.|..+|.++.|++..+..+++++.|++|++|+...++.+.++.. +...|+..+|+|..
T Consensus 91 ~~~s~-Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----------h~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 91 TMPSK-PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----------HNSCIYQAAFSPHI 159 (311)
T ss_pred CCCCc-chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----------CccEEEEEecCCCC
Confidence 55443 33458999999999999998878899999999999999998888887764 55579999999998
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
++++++++.|+++++||++.... .
T Consensus 160 ~nlfas~Sgd~~l~lwdvr~~gk------------------------------------~-------------------- 183 (311)
T KOG0277|consen 160 PNLFASASGDGTLRLWDVRSPGK------------------------------------F-------------------- 183 (311)
T ss_pred CCeEEEccCCceEEEEEecCCCc------------------------------------e--------------------
Confidence 99999999999999999875310 0
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
..+..|.. .+.++.|..-+.+.|++|+.|+.|+.||+...
T Consensus 184 --------------------------------------~~i~ah~~--Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 184 --------------------------------------MSIEAHNS--EILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred --------------------------------------eEEEeccc--eeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 01223332 26777773346678999999999999999764
Q ss_pred -eEEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcccc--cccccccccEEEEEEecCC-cEEEeeecCCce
Q 012712 376 -ELIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAADR--ATLPTNIEQVCFSIYSADY-WWSKSQNFSCSI 450 (458)
Q Consensus 376 -~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~~~--~~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i 450 (458)
.++.++.+|.-.|..+.|||.. ..||+++.|-+++|||.+.+.- .+...|.+-+..+.||+-. .++|+.+.|+.+
T Consensus 224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 224 RTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred cccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence 5788899999999999999975 4889999999999999985532 3556677779999999854 999999999999
Q ss_pred EEEE
Q 012712 451 LLFE 454 (458)
Q Consensus 451 ~~w~ 454 (458)
+||+
T Consensus 304 ~Vw~ 307 (311)
T KOG0277|consen 304 YVWN 307 (311)
T ss_pred eeec
Confidence 9997
No 76
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.2e-34 Score=223.11 Aligned_cols=299 Identities=12% Similarity=0.195 Sum_probs=227.9
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC-----------------cceeeeeccCCCcceeEEEEccCCC
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT-----------------ERVKLSFHSGHNDNVFQAKIMPFTD 117 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~-----------------~~~~~~~~~~~~~~i~~~~~~~~~~ 117 (458)
..+..|++++++.+|+|||.++|||+.|..|+|.|++. +.++.+.+-.|..+|+++.|+| .
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP--r 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP--R 183 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc--h
Confidence 45678999999999999999999999999999999872 1133344468999999999999 9
Q ss_pred CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
...|++++.|++|+++|+................+|.++.|+|.| .+|+.|..-..+++||+++-++...-..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanP------ 256 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANP------ 256 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCc------
Confidence 999999999999999999765443322233355789999999999 6788888889999999998876433321
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELL 276 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l 276 (458)
...+...|+++.+++. +++.++++.||.|++||--+++. ...+...| ...|.+..|..+|+++
T Consensus 257 -d~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~rC--------------v~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 257 -DDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNRC--------------VRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred -ccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHHH--------------HHHHHhhcCCceeeeEEEccCCeEE
Confidence 1126678999999997 78999999999999999887763 33344434 4579999999999999
Q ss_pred EEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 277 VSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 277 ~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
.+.+.+ .+++|.+.++.....+.+..... -..| -+...| ....
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tg------------------------------rq~~-----rtqAvF-NhtE 364 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTG------------------------------RQKH-----RTQAVF-NHTE 364 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCccc------------------------------chhh-----hhhhhh-cCcc
Confidence 988855 79999999865433332110000 0000 111222 5555
Q ss_pred cEEEEecC-CCeEEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 356 EYVVSGSD-CGRIFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 356 ~~l~~~~~-dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
.|++.-.+ .+.+.-||..++..+..+ .+|++.+..+.-||.+.-+.+|+.|-.+|+|--
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 56655433 367889999888776655 479999999999999999999999999999953
No 77
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=239.39 Aligned_cols=401 Identities=14% Similarity=0.149 Sum_probs=296.8
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccc---------------cc------cccccccccccceEEe------eeeeEeecC
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLS---------------TR------NFALRRRASEDLVLRL------GIYAKLDKH 60 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~---------------~~------~~~~~~~~~~~~~~~~------~~~~~~~~h 60 (458)
+-|..|+++..++.+.||+..+++.. .. ....++.++.++...+ +.+.+++++
T Consensus 122 ~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~ 201 (910)
T KOG1539|consen 122 PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF 201 (910)
T ss_pred eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence 45778899999999999999874211 00 1122666777776666 788999999
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeeccccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERG 139 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~ 139 (458)
...|+++.-+|--..+|.|..+|+|.+++++.++.+..+.. ..+.|++++|.. ||+. +++++..|.+.+||++..+
T Consensus 202 ~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrt--DG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 202 FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRT--DGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEecc--CCCeeEEeccCCceEEEEEcCCCe
Confidence 99999999999889999999999999999999999999832 259999999998 8865 5566667999999998765
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
... .....|.+.+..+.|.|.. .++++++.|+.+++|=..++.-.. .++. +.| |..+..++.|...++..
T Consensus 279 l~~-v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~-----R~G--Hs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 279 LIN-VTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRS-----RGG--HSAPPSCIRFYGSQGHF 349 (910)
T ss_pred eee-eeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheee-----ccC--CCCCchheeeeccCcEE
Confidence 544 3356788999999999988 589999999999988665544322 2221 223 55578999999666899
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCC-CCC--CcCCCccccccccceeEEEeCCCC-----cEEEEecCC-cEEEEEc
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQ-PAD--YFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQ 289 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~-~i~i~~~ 289 (458)
+.+++.|++++.+++......+...... +.. .........-.-.+|..+++.... ..+++.-+. .++.|+.
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 9999999999999887654333221100 000 000000111123466677665432 233333343 6999998
Q ss_pred cCCCCC-CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 290 DMGLGP-NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 290 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
.+...- ..+ ....++. ....+++++. ++.|++.+.|...|.|-
T Consensus 430 ~n~~~G~~~L---------------------------------~~~~~~~--~~~~~~av~v-s~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 430 RNKTSGRHVL---------------------------------DPKRFKK--DDINATAVCV-SFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCcccccEEe---------------------------------cCccccc--cCcceEEEEE-eccCceEEEeccCCeEE
Confidence 874320 000 0111111 2224888988 99999999999999999
Q ss_pred EEEecCCeEEEEe---ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccc---------------------------
Q 012712 369 IWKKKGGELIRVI---EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD--------------------------- 418 (458)
Q Consensus 369 iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~--------------------------- 418 (458)
+|++++|-....+ ..|.++|++++...-++.+++++.+|.+++|+.....
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9999999888888 5899999999998889999999999999999887532
Q ss_pred ---------------ccccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 419 ---------------RATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 419 ---------------~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
...+.+|..+|++++|||||+||++++.|++|++||..
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 02345788999999999999999999999999999974
No 78
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-34 Score=214.30 Aligned_cols=284 Identities=17% Similarity=0.227 Sum_probs=223.8
Q ss_pred CCCCCCC-CCeEEEe-------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-
Q 012712 3 DASNNNN-NKRARTS-------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG- 73 (458)
Q Consensus 3 ~~~~~~~-~~~l~~~-------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~- 73 (458)
+|.|||- ..+||.+ ...|.+.|-++..++-+ ...+.+. -.+.+..++|++..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi------------------~e~~s~d-~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGI------------------QECQSYD-TEDGLFDVAWSENHE 73 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCe------------------EEEEeee-cccceeEeeecCCCc
Confidence 4567775 3444443 24688889888744433 2233343 45789999999964
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v 153 (458)
+.+++++.||.++|||+..........+.|..+|.++.|++. ....+++++.|++|++|+...+..+.+ +.+|...|
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~~Sv~T--f~gh~~~I 150 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDPNRPNSVQT--FNGHNSCI 150 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecCCCCcceEe--ecCCccEE
Confidence 678899999999999976554433344899999999999984 667788889999999999988888776 99999999
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
...+|+|..++++++++.|+.+++||++.......+.. +..++.|+.|+.-+.+++++|+.|+.|+.||+
T Consensus 151 y~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a----------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 151 YQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA----------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDI 220 (311)
T ss_pred EEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe----------ccceeEeecccccCCcEEEecCCCceEEEEeh
Confidence 99999999999999999999999999987654444543 44579999999988899999999999999999
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
++.+ .|.....+|.-.|+.+.|||.. .+|++++-| ++++||...+
T Consensus 221 r~~r--------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------------------- 267 (311)
T KOG0277|consen 221 RNLR--------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------------------- 267 (311)
T ss_pred hhcc--------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------------------
Confidence 9876 2344567889999999999975 588888866 8999998753
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEe
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~ 372 (458)
...+.+...|.. .+..+.| ++ +..++|+.+.|..++||+.
T Consensus 268 ------------------ds~~e~~~~HtE--Fv~g~Dw-s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 ------------------DSAIETVDHHTE--FVCGLDW-SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------------hhhhhhhhccce--EEecccc-ccccCceeeecccccceeeecc
Confidence 233445555555 5788888 44 6679999999999999984
No 79
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=227.11 Aligned_cols=355 Identities=17% Similarity=0.216 Sum_probs=269.7
Q ss_pred CCCC-CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecCCC
Q 012712 6 NNNN-NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 6 ~~~~-~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
|.|. ..++++++ .|.+..|+.+++.+.++ ...+++++ ..|.|++|.++|+ ++||..+|
T Consensus 208 FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~------------------~~~fek~ekk~Vl~v~F~engd-viTgDS~G 267 (626)
T KOG2106|consen 208 FHPTDPNLIITCG-KGHLYFWTLRGGSLVKR------------------QGIFEKREKKFVLCVTFLENGD-VITGDSGG 267 (626)
T ss_pred eccCCCcEEEEeC-CceEEEEEccCCceEEE------------------eeccccccceEEEEEEEcCCCC-EEeecCCc
Confidence 4455 45556655 78899999998877644 33455443 6799999999997 67999999
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--e--------------------
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--V-------------------- 141 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~-------------------- 141 (458)
.|.||+..+.+..++.. .|.+.|.+++... +|. |++|+.|..|..||-.-.+. .
T Consensus 268 ~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr--~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH-AHDGGVFSLCMLR--DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred eEEEEeCCCceEEeEee-ecCCceEEEEEec--Ccc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 99999998888777775 9999999999997 775 55599999999998321110 0
Q ss_pred ----------------eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 142 ----------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 142 ----------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
......+|......++.+|+. .++++++.|+.+++|+ ..++..... ...+
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~-----------~~d~ 409 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKI-----------IEDP 409 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEE-----------ecCc
Confidence 011234588889999999998 6899999999999999 333333322 3346
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcE
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFI 284 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i 284 (458)
+.|+.|+|. + .++.|...|...+.|.++..+. ..... ..++++++|+|+|.+||.++ ++.|
T Consensus 410 ~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv---------------~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 410 AECADFHPS-G-VVAVGTATGRWFVLDTETQDLV---------------TIHTD-NEQLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred eeEeeccCc-c-eEEEeeccceEEEEecccceeE---------------EEEec-CCceEEEEEcCCCCEEEEecCCCeE
Confidence 899999998 5 9999999999999999885432 22222 67899999999999999999 5579
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++|.+.... ........+.. ..|+.+.| |+|+++|.+-+-|
T Consensus 472 yiy~Vs~~g-------------------------------------~~y~r~~k~~g-s~ithLDw-S~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 472 YIYRVSANG-------------------------------------RKYSRVGKCSG-SPITHLDW-SSDSQFLVSNSGD 512 (626)
T ss_pred EEEEECCCC-------------------------------------cEEEEeeeecC-ceeEEeee-cCCCceEEeccCc
Confidence 999987642 22223332333 46999999 9999999999999
Q ss_pred CeEEEEEecCCeEEEEe------------------ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc----ccccc
Q 012712 365 GRIFIWKKKGGELIRVI------------------EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA----DRATL 422 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~------------------~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~----~~~~~ 422 (458)
-.|..|.....+..... ..+...|..++-+.+.+++|+|.+.|.|++|...-. .....
T Consensus 513 ~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~ 592 (626)
T KOG2106|consen 513 YEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEY 592 (626)
T ss_pred eEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceee
Confidence 99999954322211111 124455777788888999999999999999986533 33467
Q ss_pred ccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 423 PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 423 ~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.+|.+.|++++|..+...|.+.+.|.+|..|+.
T Consensus 593 ~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 593 GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 788899999999999888888779999999986
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=216.49 Aligned_cols=276 Identities=14% Similarity=0.207 Sum_probs=220.9
Q ss_pred cCCCceEEEEEec-CCCEEEEecCCCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 59 KHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 59 ~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
.-++.|.+|+||| ...+++.+|.|++||+|+++. +.........|.++|.+++|+. ||..+++|+.|+.+++||+.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEEcc
Confidence 4568899999999 556777899999999999987 4554455578999999999999 99999999999999999999
Q ss_pred cccceeeeeccccccceEEEEEcCCCC-eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
+++... +..|.++|..+.|-+... ..|++|+.|.+|+.||++...++..+..+ ..++++..-.
T Consensus 103 S~Q~~~---v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-----------eRvYa~Dv~~-- 166 (347)
T KOG0647|consen 103 SGQVSQ---VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-----------ERVYAADVLY-- 166 (347)
T ss_pred CCCeee---eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-----------ceeeehhccC--
Confidence 985433 678999999999987652 47899999999999999999888887743 3577776653
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLG 294 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~ 294 (458)
.+++++..++.|.+|++++..... +.....-+-.+++++..++....+.|+ +|.+.+..++.+..
T Consensus 167 -pm~vVata~r~i~vynL~n~~te~-------------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 167 -PMAVVATAERHIAVYNLENPPTEF-------------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred -ceeEEEecCCcEEEEEcCCCcchh-------------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 478888899999999998754221 112222345788999988887777777 88888888876432
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc-------eeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN-------CVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
.. -..|+.|.. -..|++++| +|.-..|++++.||++
T Consensus 233 ~~------------------------------------nFtFkCHR~~~~~~~~VYaVNsi~F-hP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 233 KD------------------------------------NFTFKCHRSTNSVNDDVYAVNSIAF-HPVHGTLVTAGSDGTF 275 (347)
T ss_pred cC------------------------------------ceeEEEeccCCCCCCceEEecceEe-ecccceEEEecCCceE
Confidence 21 123333331 234889998 9999999999999999
Q ss_pred EEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712 368 FIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 368 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
.+||-.....+.+.+.|..+|++.+|+.+|.++|.+
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999998888888989999999999999999998865
No 81
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-33 Score=218.53 Aligned_cols=294 Identities=15% Similarity=0.176 Sum_probs=237.9
Q ss_pred eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc------cc----------ceeeeeccccccceEEEEEcCCC
Q 012712 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE------RG----------GVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~------~~----------~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
++..|+.++.+.+|+| ||.++++|+.|..|++.|++. .+ ....+.+..|..+|+++.|+|..
T Consensus 107 ylt~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEeecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3478999999999999 999999999999999999861 11 12234577899999999999998
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
.+|++++.|++|+++|.......+-++... ...+|.+++|+|. |.++++|.....+++||+++.+.-.
T Consensus 185 -~ILiS~srD~tvKlFDfsK~saKrA~K~~q--------d~~~vrsiSfHPs-GefllvgTdHp~~rlYdv~T~Qcfv-- 252 (430)
T KOG0640|consen 185 -TILISGSRDNTVKLFDFSKTSAKRAFKVFQ--------DTEPVRSISFHPS-GEFLLVGTDHPTLRLYDVNTYQCFV-- 252 (430)
T ss_pred -heEEeccCCCeEEEEecccHHHHHHHHHhh--------ccceeeeEeecCC-CceEEEecCCCceeEEeccceeEee--
Confidence 799999999999999998765544433221 4457999999997 7899999999999999999876321
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
+...-..|.+.|+++.+++.|++.++++ ||.|++||--+
T Consensus 253 ----------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS------------------------------ 292 (430)
T KOG0640|consen 253 ----------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS------------------------------ 292 (430)
T ss_pred ----------ecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc------------------------------
Confidence 1234456789999999999999999999 66899999655
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC-----ceeeEEEecCC
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR-----HVVNCIEPHPH 396 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~s~~ 396 (458)
.+++..+....+...|.+..| ..+|+|+++.+.|..+++|.+.+++.+.++.+.. .--+...|+..
T Consensus 293 --------~rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht 363 (430)
T KOG0640|consen 293 --------NRCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT 363 (430)
T ss_pred --------HHHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc
Confidence 455666654444446888888 9999999999999999999999999999887541 12355667777
Q ss_pred CCeEEEeec-CCcEEEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 397 STVLASSGI-ESDIKILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 397 ~~~l~s~~~-d~~i~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
..+++.-.+ .+.+.-||..+.... ...+|.+.+..+.-||.+.-+.+++.|-.+++|--
T Consensus 364 EdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 364 EDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 777766543 578899999988665 44789999999999999999999999999999953
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8e-33 Score=246.47 Aligned_cols=271 Identities=21% Similarity=0.338 Sum_probs=231.1
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
....+++++.|++|++||..++..+.. .+.||.+.|.+++|..-+.+|++|+.|.++++|
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~--------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILT--------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEe--------------------eccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 366789999999999999998887632 589999999999998778899999999999999
Q ss_pred ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712 89 DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (458)
|..+|++...+ .+|.+.|.++... ...+++|+.|.+|++|++.++..+.. +.+|.++|+++..+ + .++++
T Consensus 277 d~~sg~C~~~l-~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~-~~lvs 346 (537)
T KOG0274|consen 277 DCSTGECTHSL-QGHTSSVRCLTID----PFLLVSGSRDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--E-PLLVS 346 (537)
T ss_pred ecCCCcEEEEe-cCCCceEEEEEcc----CceEeeccCCceEEEEeccCcceEEE--eccccccEEEEEec--C-CEEEE
Confidence 99999999988 6999999999884 46888899999999999998888766 67799999999998 3 57999
Q ss_pred ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
|+.|++|++||+.+++++..+.. |...|.++.+.+. ..+++|+.|++|++||+++..
T Consensus 347 gs~d~~v~VW~~~~~~cl~sl~g----------H~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~----------- 403 (537)
T KOG0274|consen 347 GSYDGTVKVWDPRTGKCLKSLSG----------HTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR----------- 403 (537)
T ss_pred EecCceEEEEEhhhceeeeeecC----------CcceEEEEEecCc--ceEEeeeeccceEeecCCchh-----------
Confidence 99999999999999999888864 5568999988763 699999999999999998751
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTD 328 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (458)
T Consensus 404 -------------------------------------------------------------------------------- 403 (537)
T KOG0274|consen 404 -------------------------------------------------------------------------------- 403 (537)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec-CCceeeEEEecCCCCeEEEeecCC
Q 012712 329 VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA-DRHVVNCIEPHPHSTVLASSGIES 407 (458)
Q Consensus 329 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~ 407 (458)
+++..+.+|..- +..+. ..+++|++++.|++|++||.+++++++++.+ |...|..+++. ...+++++.|+
T Consensus 404 --~c~~tl~~h~~~--v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~ 474 (537)
T KOG0274|consen 404 --KCIHTLQGHTSL--VSSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDG 474 (537)
T ss_pred --hhhhhhcCCccc--ccccc---cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCC
Confidence 122334444442 34443 3678999999999999999999999999998 67889988886 46788899999
Q ss_pred cEEEecCCcccccc
Q 012712 408 DIKILTPNAADRAT 421 (458)
Q Consensus 408 ~i~iw~~~~~~~~~ 421 (458)
.+++||+.+++...
T Consensus 475 ~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 475 SVKLWDLRSGTLIR 488 (537)
T ss_pred eeEEEecccCchhh
Confidence 99999999987653
No 83
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-31 Score=225.35 Aligned_cols=404 Identities=12% Similarity=0.130 Sum_probs=283.0
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC-CceEEEEEecCCCEEEEecC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~ 81 (458)
.++|+.+.+.||.+-.||.|.||++..+-.. ...+.++. +.|.+++|++ +..|.+.+.
T Consensus 30 slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~--------------------~~vi~g~~drsIE~L~W~e-~~RLFS~g~ 88 (691)
T KOG2048|consen 30 SLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL--------------------EPVIHGPEDRSIESLAWAE-GGRLFSSGL 88 (691)
T ss_pred EEEEeccCCceeeeccCCcEEEEccCCCcee--------------------eEEEecCCCCceeeEEEcc-CCeEEeecC
Confidence 5678899999999999999999999965443 23566664 6899999995 556888899
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
+|.|.-||+.+++..... ....+.|++++.+| .+..++.|+.||.+..++...+.......+...++.+.++.|+|+
T Consensus 89 sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNI-DSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred CceEEEEecccCceeEEe-cCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 999999999999998877 67788999999999 899999999999888888877776666667777899999999999
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
+ ..+++|+.||.|++||...+..............++ ...-|.++.|-.+ ..+++|..-|+|.+||...+.+.+.
T Consensus 166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~--~~~iVWSv~~Lrd--~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR--EPTIVWSVLFLRD--STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred c-cEEEecccCceEEEEEcCCCceEEEeeecccccccC--CceEEEEEEEeec--CcEEEecCCceEEEEcccCcchhhh
Confidence 9 678999999999999999988766332211111111 2335778888765 5899999999999999998875433
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCC------CCCCCcccccccc--cc
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNP------PPSSPVSTRSEAS--EM 312 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~------~~~~~~~~~~~~~--~~ 312 (458)
...|...|.+++..+++..+.+++ ++.+..|...+....+. ...+......... .+
T Consensus 241 ---------------~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~ 305 (691)
T KOG2048|consen 241 ---------------HSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALI 305 (691)
T ss_pred ---------------hhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEE
Confidence 334788999999999977777666 77888887776643111 1111111100000 00
Q ss_pred CC-----------------CCcc---------cc--------CCC---------CCCc------ccccCc-eeecCccce
Q 012712 313 GS-----------------DHTS---------AA--------SPS---------TANT------DVRIAP-QVYKGHRNC 342 (458)
Q Consensus 313 ~~-----------------~~~~---------~~--------~~~---------~~~~------~~~~~~-~~~~~~~~~ 342 (458)
+. ++.. +. ... .+.. ...... -..+.++
T Consensus 306 sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~-- 383 (691)
T KOG2048|consen 306 SGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKE-- 383 (691)
T ss_pred ecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcc--
Confidence 00 0000 00 000 0000 000011 1112222
Q ss_pred eeeeEEEEecCCCcEEEEecCCCeEEEEEecC------------------------------------------------
Q 012712 343 VTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------------------------------------------------ 374 (458)
Q Consensus 343 ~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------------------------------------------------ 374 (458)
.|.+.+. ||+|++++.+.- .+++||.+..
T Consensus 384 -nIs~~ai-SPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 384 -NISCAAI-SPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred -ceeeecc-CCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 3777777 999999998762 2333443321
Q ss_pred C--eEEEEee--cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEEEEEecCC-cEEEeeecCC
Q 012712 375 G--ELIRVIE--ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCFSIYSADY-WWSKSQNFSC 448 (458)
Q Consensus 375 ~--~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~~~~s~d~-~~l~s~~~d~ 448 (458)
. +.+..+. +-...|..+..||+|++||+.+.+|.|.+|++++.+...+. .-...+++++|+|.. ..|+.+..|+
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~n 540 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNN 540 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCC
Confidence 0 0000000 12245889999999999999999999999999998776554 455779999999554 8888889999
Q ss_pred ceEEEEE
Q 012712 449 SILLFEW 455 (458)
Q Consensus 449 ~i~~w~~ 455 (458)
++.-||.
T Consensus 541 Qv~efdi 547 (691)
T KOG2048|consen 541 QVFEFDI 547 (691)
T ss_pred eEEEEec
Confidence 9988886
No 84
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.2e-34 Score=225.27 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=220.7
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEEC
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (458)
..+++|+.||.|+|||+...++. .+++.|.+.|..|++.. ..+++++.|.+|+.|.+
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~---------------------~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECI---------------------RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhhccccCceEEEEehhhhhhh---------------------heeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 66999999999999999976665 45999999999999986 67889999999999997
Q ss_pred CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712 91 KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
+. .+..++ .....+..+.-+. .++.++|+|. .|.|||.....++.. +.--.+.|.++.|+|....+|++++
T Consensus 137 ~~-~p~~ti--lg~s~~~gIdh~~--~~~~FaTcGe--~i~IWD~~R~~Pv~s--mswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 137 DG-PPLHTI--LGKSVYLGIDHHR--KNSVFATCGE--QIDIWDEQRDNPVSS--MSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred cC-Ccceee--ecccccccccccc--ccccccccCc--eeeecccccCCccce--eecCCCceeEEecCCCcchheeeec
Confidence 75 455555 2345677777776 7788999986 589999987777665 4445678999999999988999999
Q ss_pred CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCC
Q 012712 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADY 250 (458)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 250 (458)
.|+.|.+||+++..++.... ....-+.++|+|. ...|++|++|..++.||++..+
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi-----------~~mRTN~IswnPe-afnF~~a~ED~nlY~~DmR~l~------------- 262 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVI-----------LTMRTNTICWNPE-AFNFVAANEDHNLYTYDMRNLS------------- 262 (433)
T ss_pred cCCceEEEecccCCccceee-----------eeccccceecCcc-ccceeeccccccceehhhhhhc-------------
Confidence 99999999999999887765 3335688999994 8899999999999999999875
Q ss_pred cCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 251 FCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
.+.....+|...|..+.|+|.|+-+++|+ |.+|+||..+.+.....
T Consensus 263 -~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi-------------------------------- 309 (433)
T KOG0268|consen 263 -RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI-------------------------------- 309 (433)
T ss_pred -ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh--------------------------------
Confidence 34566778889999999999999999999 45899999887532211
Q ss_pred ccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 379 (458)
+. ......|.++.| |.|.+|+++|++|+.|++|.....+.+.
T Consensus 310 ------Yh-tkRMq~V~~Vk~-S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 310 ------YH-TKRMQHVFCVKY-SMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred ------hh-HhhhheeeEEEE-eccccEEEecCCCcceeeeecchhhhcC
Confidence 11 111224899999 9999999999999999999986554443
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-32 Score=211.53 Aligned_cols=275 Identities=18% Similarity=0.226 Sum_probs=218.8
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
-...|++|.|+|.+..|+.++.||.+++||+...+....+ .|..++.+++|. +...+++|+.||.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~---d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFA---DESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeecc---CCceEEEeccCceEEEEEecCCc
Confidence 3678999999999999999999999999999988766665 689999999998 56789999999999999999887
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
... +..|..++.++.+.+.. ..+++|+.|++|++||.+.......+. ....|.++... ++.|
T Consensus 87 ~~~---igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-----------~~kkVy~~~v~---g~~L 148 (323)
T KOG1036|consen 87 EDQ---IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-----------QGKKVYCMDVS---GNRL 148 (323)
T ss_pred cee---eccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-----------cCceEEEEecc---CCEE
Confidence 654 67799999999999876 679999999999999999855554443 33368888876 4689
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~ 298 (458)
++|+.+..+.+||+++..... ......-+..++++++.|++.-.++++ +|.+.+=.++.....
T Consensus 149 vVg~~~r~v~iyDLRn~~~~~-------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~--- 212 (323)
T KOG1036|consen 149 VVGTSDRKVLIYDLRNLDEPF-------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA--- 212 (323)
T ss_pred EEeecCceEEEEEcccccchh-------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH---
Confidence 999999999999999876321 111223356789999999877666666 887666544432100
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc-------ceeeeeEEEEecCCCcEEEEecCCCeEEEEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR-------NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWK 371 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd 371 (458)
......|+.|. -..+|++++| +|-.+.||+|+.||.|.+||
T Consensus 213 -------------------------------~skkyaFkCHr~~~~~~~~~yPVNai~F-hp~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 213 -------------------------------QSKKYAFKCHRLSEKDTEIIYPVNAIAF-HPIHGTFATGGSDGIVNIWD 260 (323)
T ss_pred -------------------------------hhhceeEEeeecccCCceEEEEeceeEe-ccccceEEecCCCceEEEcc
Confidence 11122333332 2235899999 99999999999999999999
Q ss_pred ecCCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712 372 KKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 372 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 405 (458)
+.+.+.+..+......|.+++|+.||..||+++.
T Consensus 261 ~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999888788999999999999999864
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=219.99 Aligned_cols=283 Identities=15% Similarity=0.261 Sum_probs=238.9
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 141 (458)
..|.++...|....++||+.|..+.++|...++.+..+ .||...|+.+.|+| +...+++++.|-.|++|........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEecc--chhheeecCCcceEEeeccccccCc
Confidence 56888888888788999999999999999988887777 89999999999999 9999999999999999999877655
Q ss_pred eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 142 ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 142 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
.. ...|..+|+.+..+|.| .+|++++.|++..+.|++++.......... ....+++.+|+|| |.+|.+
T Consensus 297 ~~--~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~--------s~v~~ts~~fHpD-gLifgt 364 (506)
T KOG0289|consen 297 TS--SRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDET--------SDVEYTSAAFHPD-GLIFGT 364 (506)
T ss_pred cc--cccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeecc--------ccceeEEeeEcCC-ceEEec
Confidence 44 77899999999999999 689999999999999999998776654210 3346899999998 799999
Q ss_pred ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCC
Q 012712 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~ 300 (458)
|..||.|++||+.+... ...+.+|.++|..++|+.+|-+|++++++ .|++||++..+.
T Consensus 365 gt~d~~vkiwdlks~~~---------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n------ 423 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTN---------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN------ 423 (506)
T ss_pred cCCCceEEEEEcCCccc---------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc------
Confidence 99999999999998753 23455689999999999999999999977 599999987432
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe--cCCeEE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK--KGGELI 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~ 378 (458)
.+++.-.... .+.++.| ++.|++|+.++.|=+|++++- .++.++
T Consensus 424 --------------------------------~kt~~l~~~~-~v~s~~f-D~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 424 --------------------------------FKTIQLDEKK-EVNSLSF-DQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred --------------------------------cceeeccccc-cceeEEE-cCCCCeEEeecceeEEEEEecccccceee
Confidence 2333322222 3788998 999999999988877777763 356778
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888889989999999999999999999999998864
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=2.1e-32 Score=247.20 Aligned_cols=293 Identities=13% Similarity=0.181 Sum_probs=228.6
Q ss_pred CCCceEEEEEecCCCEEEEec--CCCeEEEEECCCc-----------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcC
Q 012712 60 HRGCVNTVSFNTDGDILISGS--DDRRVILWDWKTE-----------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA 126 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~--~d~~i~iwd~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~ 126 (458)
++..|.++..+|||..+|||+ .|+.++||+.+.- .........|.+.|+|+.|+| ||++||+|+.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~--dG~~lAsGSD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP--DGSYLASGSD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC--CCCeEeeccC
Confidence 456799999999999999999 8999999986421 111222367999999999999 9999999999
Q ss_pred CCcEEEeecccc----------c------ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712 127 DGQVRHAQILER----------G------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (458)
Q Consensus 127 dg~i~vw~~~~~----------~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 190 (458)
|+.|.+|+.... . ......+.+|...|..++|+|++ .+|++++.|++|.+||.++.+....+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence 999999998730 0 01234577899999999999998 799999999999999999998777776
Q ss_pred ecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712 191 CRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (458)
Q Consensus 191 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (458)
. |...|..+.|+|- |++|++-+.|++|++|++.+....+. ..+
T Consensus 169 ~----------H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~---------------It~----------- 211 (942)
T KOG0973|consen 169 G----------HQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKS---------------ITK----------- 211 (942)
T ss_pred c----------ccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEe---------------ecc-----------
Confidence 4 5557899999998 79999999999999999765332111 000
Q ss_pred CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
.+........+..+.|
T Consensus 212 ----------------------------------------------------------------pf~~~~~~T~f~RlSW 227 (942)
T KOG0973|consen 212 ----------------------------------------------------------------PFEESPLTTFFLRLSW 227 (942)
T ss_pred ----------------------------------------------------------------chhhCCCcceeeeccc
Confidence 0000001113566777
Q ss_pred ecCCCcEEEEecC----CCeEEEEEecCCeEEEEeecCCceeeEEEecCC-----CC------------eEEEeecCCcE
Q 012712 351 FGPKCEYVVSGSD----CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH-----ST------------VLASSGIESDI 409 (458)
Q Consensus 351 ~s~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~s~~~d~~i 409 (458)
||||++|++... -.++.|.+-.+.+.-..|-+|.+++.+++|+|. .+ .+|+|+.|++|
T Consensus 228 -SPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 228 -SPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred -CCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 888888876532 246888888888888899999999999999982 11 67899999999
Q ss_pred EEecCCcccccccccc--cccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 410 KILTPNAADRATLPTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 410 ~iw~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
-||.....+++.+..+ ...|..++|+|||..|+.++.||+|.+..|-+
T Consensus 307 SVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 307 SVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 9999876665543332 34599999999999999999999999998754
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-32 Score=231.28 Aligned_cols=271 Identities=19% Similarity=0.263 Sum_probs=227.3
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
...||+|. ...|.+|+..+|+... ....+.+.|+++.|+++|.+||+|..+|.|.|||
T Consensus 188 ~n~laVal-g~~vylW~~~s~~v~~---------------------l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 188 ANVLAVAL-GQSVYLWSASSGSVTE---------------------LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred CCeEEEEe-cceEEEEecCCCceEE---------------------eEecCCCceEEEEECCCCCEEEEeecCCeEEEEe
Confidence 34567666 6689999999887441 2333489999999999999999999999999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
..+.+.+..+...|...|-+++|. +..+.+|+.++.|..+|++..+.... .+.+|...|..++|++++ .++++|
T Consensus 246 ~~~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~-~~lASG 319 (484)
T KOG0305|consen 246 VKEQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDG-NQLASG 319 (484)
T ss_pred hhhccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCC-CeeccC
Confidence 999888887743399999999995 57899999999999999998877655 588999999999999999 789999
Q ss_pred cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCCccCCCC
Q 012712 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGSTDFGQP 247 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~ 247 (458)
+.|+.+.|||....++...+.. |...|.+++|+|-...+||+|+ .|+.|++||..+++.+...
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~----------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----- 384 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTE----------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----- 384 (484)
T ss_pred CCccceEeccCCCccccEEEec----------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-----
Confidence 9999999999976666655543 6668999999998788999975 7899999999988754321
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
.....|..|.|++..+-|+++. ++.|.||+..+
T Consensus 385 -----------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--------------------------------- 420 (484)
T KOG0305|consen 385 -----------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--------------------------------- 420 (484)
T ss_pred -----------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc---------------------------------
Confidence 1356899999999986666543 45799999887
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
...+..+.+|... |..+++ +|||..+++|+.|.++++|++-..
T Consensus 421 -----~~~~~~l~gH~~R--Vl~la~-SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 -----MKLVAELLGHTSR--VLYLAL-SPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -----cceeeeecCCcce--eEEEEE-CCCCCEEEEecccCcEEeccccCC
Confidence 4567888899985 999998 999999999999999999998664
No 89
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-33 Score=244.45 Aligned_cols=263 Identities=18% Similarity=0.276 Sum_probs=202.6
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccc------------------------------cccccccccccce------
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTR------------------------------NFALRRRASEDLV------ 48 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~------------------------------~~~~~~~~~~~~~------ 48 (458)
-||+||++||+|++|+.||||.+...+...- .............
T Consensus 274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~ 353 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK 353 (712)
T ss_pred EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence 3899999999999999999999985221110 0000000000000
Q ss_pred ---EEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 49 ---LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 49 ---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
..-++++.+.||.+.|..|.||.+ ++|++++.|.+|+||++...+++..| .|..-|+|++|+|. |.+++++|+
T Consensus 354 ~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPv-DDryFiSGS 429 (712)
T KOG0283|consen 354 AFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPV-DDRYFISGS 429 (712)
T ss_pred cccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEeccc-CCCcEeecc
Confidence 111788899999999999999975 58999999999999999999999998 79999999999995 889999999
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
-||.++||++...+.+. ...-..-|++++|.|+| +..+.|+.+|.+++|+.+..+....+.......... ....
T Consensus 430 LD~KvRiWsI~d~~Vv~---W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~--~~~r 503 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVD---WNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK--QGKR 503 (712)
T ss_pred cccceEEeecCcCeeEe---ehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc--cCce
Confidence 99999999997765543 34444789999999999 788999999999999999888776665443222111 1227
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEecCC-c
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYNDE-F 283 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~-~ 283 (458)
|+.+.|.|.....+++.+.|..|+|||.+..++...+ ...+ ...-....|+.||++|+++++| .
T Consensus 504 ITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~Kf--------------KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 504 ITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKF--------------KGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred eeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhh--------------cccccCCcceeeeEccCCCEEEEeecCce
Confidence 9999999976777888999999999999877654331 1111 1234567899999999999977 6
Q ss_pred EEEEEccC
Q 012712 284 IYLFTQDM 291 (458)
Q Consensus 284 i~i~~~~~ 291 (458)
|++|+...
T Consensus 570 VYiW~~~~ 577 (712)
T KOG0283|consen 570 VYIWKNDS 577 (712)
T ss_pred EEEEeCCC
Confidence 99999855
No 90
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.3e-31 Score=237.05 Aligned_cols=275 Identities=16% Similarity=0.154 Sum_probs=198.2
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDD 82 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d 82 (458)
..+++++..+++++.+.....|+...|..+.. -...+. .......+.+|.+.|.+++|+| ++++|++|+.|
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~-------~~~~G~-~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLK-------HTDYGK-LASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEee-------cccccc-CCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 34567877788888899899998875432211 000000 0011234789999999999999 88999999999
Q ss_pred CeEEEEECCCcc-------eeeeeccCCCcceeEEEEccCCCC-eEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712 83 RRVILWDWKTER-------VKLSFHSGHNDNVFQAKIMPFTDD-RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (458)
Q Consensus 83 ~~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~ 154 (458)
++|++||+.++. .+..+ .+|...|.+++|+| ++ ++|++++.|+.|++||+.+++.... +..|...|.
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P--~~~~iLaSgs~DgtVrIWDl~tg~~~~~--l~~h~~~V~ 172 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHP--SAMNVLASAGADMVVNVWDVERGKAVEV--IKCHSDQIT 172 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCc--CCCCEEEEEeCCCEEEEEECCCCeEEEE--EcCCCCceE
Confidence 999999997653 23344 78999999999999 75 6899999999999999998776544 778999999
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec----CCCeEEE
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG----SDEYTRL 230 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i~i 230 (458)
+++|+|++ .+|++++.|+.|++||+++++.+..+..+. ......+.|.+++ ..+++++ .|+.|++
T Consensus 173 sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 173 SLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRK-DLIITLGCSKSQQRQIML 241 (493)
T ss_pred EEEEECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCC-CeEEEEecCCCCCCeEEE
Confidence 99999999 789999999999999999988765554321 1123466788874 4555443 4788999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
||+++... ++... +.
T Consensus 242 WDlr~~~~------------------------p~~~~--------------------~~--------------------- 256 (493)
T PTZ00421 242 WDTRKMAS------------------------PYSTV--------------------DL--------------------- 256 (493)
T ss_pred EeCCCCCC------------------------ceeEe--------------------cc---------------------
Confidence 99875421 00000 00
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeec-CCcee
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEA-DRHVV 388 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v 388 (458)
+... .+....| ++++++|++++ .|+.|++||+.+++++..... +..++
T Consensus 257 ----------------------------d~~~-~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~ 306 (493)
T PTZ00421 257 ----------------------------DQSS-ALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPH 306 (493)
T ss_pred ----------------------------CCCC-ceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCC
Confidence 0000 1233344 99999999887 599999999999988776543 44567
Q ss_pred eEEEecCCC
Q 012712 389 NCIEPHPHS 397 (458)
Q Consensus 389 ~~~~~s~~~ 397 (458)
..++|.|..
T Consensus 307 ~g~~~~pk~ 315 (493)
T PTZ00421 307 KGLCMMPKW 315 (493)
T ss_pred cceEecccc
Confidence 888888853
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-32 Score=224.47 Aligned_cols=278 Identities=18% Similarity=0.239 Sum_probs=222.1
Q ss_pred CCCCCCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe
Q 012712 1 MDDASNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG 79 (458)
Q Consensus 1 ~~~~~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 79 (458)
|+++.|+|..++ +|+.+ .-.+.||+..+....+. +...+..|.++.|-.||++||.|
T Consensus 29 vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~---------------------~srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKT---------------------FSRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred ceeEecCCCCCCceEEec-ccEEEEEecchhhhhhh---------------------HHhhccceeEEEeecCCeEEEcc
Confidence 456778887666 55555 45699999997665533 44567889999999999999999
Q ss_pred cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
+..|.|+|||..+...+..+ .+|+.++..+.|+|. ++..+++|+.|+.+++||+.+... ...+.+|++.|.+.+|+
T Consensus 87 D~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDIS 162 (487)
T ss_pred CCcCcEEEeccccHHHHHHH-hhccCceeEEEeccc-CCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccc
Confidence 99999999996664454444 899999999999993 677788999999999999988774 34589999999999999
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
|..++++++|+.||.|++||++.. ..+..+. +..+|..+.+-|. +.++++++.+ .|++||+-++..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-----------hg~pVe~vl~lps-gs~iasAgGn-~vkVWDl~~G~q 229 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-----------HGCPVESVLALPS-GSLIASAGGN-SVKVWDLTTGGQ 229 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCceeEEec-----------CCCceeeEEEcCC-CCEEEEcCCC-eEEEEEecCCce
Confidence 998889999999999999999987 4444443 6668999999996 6788888754 799999996642
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
. ......|...|+|+.+..++..|++++ |+.+++||+.+
T Consensus 230 l--------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~-------------------------- 269 (487)
T KOG0310|consen 230 L--------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN-------------------------- 269 (487)
T ss_pred e--------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEccc--------------------------
Confidence 1 223344888999999999999999998 77999999765
Q ss_pred cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
.+.+..+. -+..|.+++. +|+++.++.|..||.+.+-+..
T Consensus 270 ------------~Kvv~s~~---~~~pvLsiav-s~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 270 ------------YKVVHSWK---YPGPVLSIAV-SPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred ------------eEEEEeee---cccceeeEEe-cCCCceEEEecccceeeeehhh
Confidence 22333332 2224899998 9999999999999988776543
No 92
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=9.9e-31 Score=216.72 Aligned_cols=363 Identities=17% Similarity=0.218 Sum_probs=262.0
Q ss_pred CCCCCCCeEEEeeCCC--------cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCC
Q 012712 5 SNNNNNKRARTSVDKA--------LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGD 74 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~--------~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~ 74 (458)
..+|+.-++++|-.-| .|||||..+- ..++.+..-...|.|++||+ .|.
T Consensus 111 ~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L---------------------~TL~V~g~f~~GV~~vaFsk~~~G~ 169 (626)
T KOG2106|consen 111 AVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTL---------------------STLHVIGFFDRGVTCVAFSKINGGS 169 (626)
T ss_pred eecCCceeeccCcccccCCCcCCCeeeecccccc---------------------eeeeeeccccccceeeeecccCCCc
Confidence 4578887888765454 4899997743 33355666778899999998 345
Q ss_pred EEEEe--cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee-ccc-cc
Q 012712 75 ILISG--SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL-LGK-HQ 150 (458)
Q Consensus 75 ~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~-~~~-~~ 150 (458)
+|+.. +.+..+.+||...+...... ...++.|....|+|. +.+++++++. |.+.+|+.+.+....+.- +.. ..
T Consensus 170 ~l~~vD~s~~h~lSVWdWqk~~~~~~v-k~sne~v~~a~FHPt-d~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ek 246 (626)
T KOG2106|consen 170 LLCAVDDSNPHMLSVWDWQKKAKLGPV-KTSNEVVFLATFHPT-DPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREK 246 (626)
T ss_pred eEEEecCCCccccchhhchhhhccCcc-eeccceEEEEEeccC-CCcEEEEeCC-ceEEEEEccCCceEEEeeccccccc
Confidence 55554 44568899999988776665 456678899999993 5666777765 899999998876544322 222 22
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
..|.|++|.+++. +++|..+|.|.+|+..+.+..+.... |.+.|.+++.-.+ + .|++|+.|+.|..
T Consensus 247 k~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~~~k~~~a----------H~ggv~~L~~lr~-G-tllSGgKDRki~~ 312 (626)
T KOG2106|consen 247 KFVLCVTFLENGD--VITGDSGGNILIWSKGTNRISKQVHA----------HDGGVFSLCMLRD-G-TLLSGGKDRKIIL 312 (626)
T ss_pred eEEEEEEEcCCCC--EEeecCCceEEEEeCCCceEEeEeee----------cCCceEEEEEecC-c-cEeecCccceEEe
Confidence 6799999999994 79999999999999876655444332 6778999999887 4 5666999999999
Q ss_pred EecCCCccCCCccCCCCCCCcCCC----------------------------ccccccccceeEEEeCCCCcEEEEec-C
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPP----------------------------NLIGDEQVGITGLAFSDQSELLVSYN-D 281 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~ 281 (458)
||-. .+.....+++.. .-.+. ....+|......++..|+...+++++ +
T Consensus 313 Wd~~-y~k~r~~elPe~--~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 313 WDDN-YRKLRETELPEQ--FGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred cccc-ccccccccCchh--cCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 9933 222222222110 00000 01223445667788888887777777 5
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~ 361 (458)
..+++|+ .. ++.-... ... .+.++.| +|.| .+|.|
T Consensus 390 k~v~lW~-~~---------------------------------------k~~wt~~-~~d--~~~~~~f-hpsg-~va~G 424 (626)
T KOG2106|consen 390 KHVRLWN-DH---------------------------------------KLEWTKI-IED--PAECADF-HPSG-VVAVG 424 (626)
T ss_pred ceEEEcc-CC---------------------------------------ceeEEEE-ecC--ceeEeec-cCcc-eEEEe
Confidence 5799998 21 1111111 111 2678888 9999 99999
Q ss_pred cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc--cc-ccccccEEEEEEecCC
Q 012712 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA--TL-PTNIEQVCFSIYSADY 438 (458)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~--~~-~~~~~~v~~~~~s~d~ 438 (458)
...|...+.|.++...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.++.+... .. ..+...|+.+.||+|+
T Consensus 425 t~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds 503 (626)
T KOG2106|consen 425 TATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS 503 (626)
T ss_pred eccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC
Confidence 9999999999998666655554 889999999999999999999999999999865332 22 2233679999999999
Q ss_pred cEEEeeecCCceEEEE
Q 012712 439 WWSKSQNFSCSILLFE 454 (458)
Q Consensus 439 ~~l~s~~~d~~i~~w~ 454 (458)
+++.+.+.|-.|.+|.
T Consensus 504 ~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWK 519 (626)
T ss_pred ceEEeccCceEEEEEc
Confidence 9999999999999994
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-31 Score=206.65 Aligned_cols=297 Identities=19% Similarity=0.318 Sum_probs=224.7
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 91 (458)
++++|+....|.-+++.-.. . ...+.....+.+...+..|.++|++++.+ +.++|+||.|-+|+|||+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~--~-------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP--K-------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR 71 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc--c-------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEecc
Confidence 47888888877666665211 0 01112234456677788999999999996 8999999999999999999
Q ss_pred CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC
Q 012712 92 TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE 171 (458)
Q Consensus 92 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 171 (458)
+...+..+ ..|.+.|+++.|.+....+.|++|+.||.|.+|+...-..+.. +++|.+.|+.++.+|.+ .+.++.+.
T Consensus 72 k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s--lK~H~~~Vt~lsiHPS~-KLALsVg~ 147 (362)
T KOG0294|consen 72 KRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS--LKAHKGQVTDLSIHPSG-KLALSVGG 147 (362)
T ss_pred chhhhcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee--ecccccccceeEecCCC-ceEEEEcC
Confidence 88887777 5799999999999822234899999999999999876655544 89999999999999999 78899999
Q ss_pred CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCc
Q 012712 172 DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYF 251 (458)
Q Consensus 172 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (458)
|+.+++||+-.++......... ....+.|+|. |.+|+.+..+ .|-+|.+.+-.......
T Consensus 148 D~~lr~WNLV~Gr~a~v~~L~~-----------~at~v~w~~~-Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-------- 206 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVLNLKN-----------KATLVSWSPQ-GDHFVVSGRN-KIDIYQLDNASVFREIE-------- 206 (362)
T ss_pred CceeeeehhhcCccceeeccCC-----------cceeeEEcCC-CCEEEEEecc-EEEEEecccHhHhhhhh--------
Confidence 9999999999988766655332 2355999998 6778777766 58999988765432211
Q ss_pred CCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712 252 CPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (458)
Q Consensus 252 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (458)
....+.++.|...+.+++.+.++.|.+||.+. ..
T Consensus 207 --------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds--------------------------------------~~ 240 (362)
T KOG0294|consen 207 --------NPKRILCATFLDGSELLVGGDNEWISLKDTDS--------------------------------------DT 240 (362)
T ss_pred --------ccccceeeeecCCceEEEecCCceEEEeccCC--------------------------------------Cc
Confidence 12457788887777666666667899999886 45
Q ss_pred CceeecCccceeeeeEEEE-ecCCCcEEEEecCCCeEEEEEecCC-----eEEEEeecCCceeeEEEe
Q 012712 332 APQVYKGHRNCVTVKGVNF-FGPKCEYVVSGSDCGRIFIWKKKGG-----ELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~-~s~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~ 393 (458)
+...+.+|.+. |.++.+ -.|++.||++++.||.|++||++.. +++..+.. ...++|+..
T Consensus 241 ~~~~~~AH~~R--VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 241 PLTEFLAHENR--VKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred cceeeecchhh--eeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 67788899885 777773 4678899999999999999999765 34444443 334555543
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-31 Score=205.06 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=223.4
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC--CCeEEEE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE--DGLVQHF 178 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~--dg~i~iw 178 (458)
......|+++.|++ +|..+++++.|..+++||..+++.... +..+...+..++|.... +.++.++. |.+|+..
T Consensus 11 ~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~t--i~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 11 RETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKT--INSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeE--eecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence 34577899999999 999999999999999999999887766 66666778888887666 34555554 8899999
Q ss_pred eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
++.+.+.++.+.. |...|++++.+|- +..+++++.|++|++||++..+..+.+ .
T Consensus 86 sl~dNkylRYF~G----------H~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~~cqg~l---------------~ 139 (311)
T KOG1446|consen 86 SLHDNKYLRYFPG----------HKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVKKCQGLL---------------N 139 (311)
T ss_pred EeecCceEEEcCC----------CCceEEEEEecCC-CCeEEecccCCeEEeeEecCCCCceEE---------------e
Confidence 9999998888864 5558999999997 589999999999999999976532221 1
Q ss_pred ccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 259 DEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
...-..++|+|+|-++|++.+. .|++||++.-.. .+...+.
T Consensus 140 --~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk------------------------------------gPF~tf~ 181 (311)
T KOG1446|consen 140 --LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDK------------------------------------GPFTTFS 181 (311)
T ss_pred --cCCCcceeECCCCcEEEEecCCCeEEEEEecccCC------------------------------------CCceeEc
Confidence 1233457899999999999866 899999987321 1112222
Q ss_pred Cc-cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce---eeEEEecCCCCeEEEeecCCcEEEec
Q 012712 338 GH-RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV---VNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 338 ~~-~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
-. ........+.| ||||++|+.++..+.+++.|.-+|..+.++..+... .....|+||++++++|+.||+|.+|+
T Consensus 182 i~~~~~~ew~~l~F-S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 182 ITDNDEAEWTDLEF-SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred cCCCCccceeeeEE-cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 11 11224788898 999999999999999999999999999998877543 25778999999999999999999999
Q ss_pred CCccccc-cccc-ccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 414 PNAADRA-TLPT-NIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 414 ~~~~~~~-~~~~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++++... .+.+ +.+++.++.|+|.-..+++++ ..+.+|=
T Consensus 261 ~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 261 LETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred cCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEe
Confidence 9998765 4444 577899999999988887754 4677774
No 95
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-32 Score=213.09 Aligned_cols=308 Identities=15% Similarity=0.211 Sum_probs=250.7
Q ss_pred cccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC
Q 012712 38 ALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD 117 (458)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 117 (458)
+++++.-.++...+++++.+.||++.|..++.......+.+++.|.+.+||.++++.++..+ .+|.+.|+++.|++ .
T Consensus 125 srivssFk~~t~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~--s 201 (481)
T KOG0300|consen 125 SRIVSSFKDGTVKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHN--S 201 (481)
T ss_pred chheeeecCCceeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEecc--c
Confidence 34666677777888999999999999999999887889999999999999999999999998 89999999999999 9
Q ss_pred CeEEEEEcCCCcEEEeec------cccc--------------------------------ceeeeeccccccceEEEEEc
Q 012712 118 DRSIVTCAADGQVRHAQI------LERG--------------------------------GVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~------~~~~--------------------------------~~~~~~~~~~~~~v~~~~~~ 159 (458)
+.++++++.|++-.||.. ..+. .++...+.+|.+.|.+..|.
T Consensus 202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL 281 (481)
T ss_pred cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence 999999999999999972 1100 01223467899999999999
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
..+ ..+++++.|.+..+||+++++.+..+.. +....+.++-+|. .+++++.+.|.+.++||++..-
T Consensus 282 ~gg-~Q~vTaSWDRTAnlwDVEtge~v~~LtG----------Hd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFReaI-- 347 (481)
T KOG0300|consen 282 AGG-QQMVTASWDRTANLWDVETGEVVNILTG----------HDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFREAI-- 347 (481)
T ss_pred cCc-ceeeeeeccccceeeeeccCceeccccC----------cchhccccccCCc-ceEEEEeccCceeEeccchhhc--
Confidence 888 6789999999999999999999888764 4446788888997 6899999999999999998431
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
.....+.+|...|++..|.-+.+ +++++++ +|++||+++.
T Consensus 348 ------------~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNM-------------------------- 388 (481)
T KOG0300|consen 348 ------------QSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNM-------------------------- 388 (481)
T ss_pred ------------ceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccc--------------------------
Confidence 23457788999999999988764 6677766 8999999874
Q ss_pred ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe-----ecCCceeeEEEe
Q 012712 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI-----EADRHVVNCIEP 393 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~ 393 (458)
..++.++.... .++.++. +..+..++.--++..|++||++ |..+..+ ++|..-|.+++|
T Consensus 389 -----------RsplATIRtdS---~~NRvav-s~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 389 -----------RSPLATIRTDS---PANRVAV-SKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred -----------cCcceeeecCC---ccceeEe-ecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeec
Confidence 22333333322 3777887 8888899998889999999995 4444333 579999999999
Q ss_pred cCCCC--eEEEeecCCcEEEecCCcc
Q 012712 394 HPHST--VLASSGIESDIKILTPNAA 417 (458)
Q Consensus 394 s~~~~--~l~s~~~d~~i~iw~~~~~ 417 (458)
..+-. -|++++.|..+.-|++...
T Consensus 453 ~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 453 LEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccCcccccccccccceeeeeEeccc
Confidence 86543 5889999999999988653
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.7e-32 Score=247.82 Aligned_cols=313 Identities=17% Similarity=0.251 Sum_probs=232.6
Q ss_pred CCCCCCCCeEEEee--CCCcEEEEEccccccccccccccccccccceE-EeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 4 ASNNNNNKRARTSV--DKALVDVWLRELGQLSTRNFALRRRASEDLVL-RLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 4 ~~~~~~~~~l~~~~--~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
+..+|++.+++||+ .|+.++||+.+. +... .++... --+.+.++..|.+.|+|+.|+|||++||+|+
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~--------~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDE--------KEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred EEecCCceeEecCCccccccceeecccc--ccch--------hhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 44689999999999 999999999872 1111 111111 1245667889999999999999999999999
Q ss_pred CCCeEEEEECCC----------c--------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 81 DDRRVILWDWKT----------E--------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 81 ~d~~i~iwd~~~----------~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
.|+.|.||.... | +.... +.+|...|..++|+| ++.+|++++.|++|.+|+..+.+.+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~-l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI-LRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEE-EecCCCccceeccCC--CccEEEEecccceEEEEccccceeee
Confidence 999999999873 0 12333 478999999999999 99999999999999999999986555
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
. +.+|...|..+.|.|-| ++|++-+.|++|++|++..-.....+..+..... ....+..+.|+|| |.+|++.
T Consensus 166 v--l~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~----~~T~f~RlSWSPD-G~~las~ 237 (942)
T KOG0973|consen 166 V--LRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP----LTTFFLRLSWSPD-GHHLASP 237 (942)
T ss_pred e--eecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCC----CcceeeecccCCC-cCeecch
Confidence 4 89999999999999999 7899999999999999776555544432221111 2335789999998 7888876
Q ss_pred c----CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCC
Q 012712 223 G----SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 223 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~ 298 (458)
. .-..+.|.+-.+.+. ...+-+|..++.+++|+|. +|.-..
T Consensus 238 nA~n~~~~~~~IieR~tWk~---------------~~~LvGH~~p~evvrFnP~-------------lfe~~~------- 282 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKV---------------DKDLVGHSAPVEVVRFNPK-------------LFERNN------- 282 (942)
T ss_pred hhccCCcceeEEEecCCcee---------------eeeeecCCCceEEEEeChH-------------Hhcccc-------
Confidence 3 223466666544432 2234457789999999983 111100
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC--cEEEEecCCCeEEEEEecCCe
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSDCGRIFIWKKKGGE 376 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~ 376 (458)
. .|... .++. ..+|+|+.|++|-||.....+
T Consensus 283 ----------------------------------~---ng~~~----------~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 283 ----------------------------------K---NGTST----------QPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred ----------------------------------c---cCCcc----------CCCcceEEEEEecCCccEEEEecCCCC
Confidence 0 00000 1111 257899999999999987777
Q ss_pred EEEEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 377 LIRVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 377 ~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
++..... ....|.+++|+|||..|..+|.||+|.+..++..+.
T Consensus 316 Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 316 PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 7765432 356799999999999999999999999999886543
No 97
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=226.25 Aligned_cols=279 Identities=16% Similarity=0.257 Sum_probs=226.6
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
.++-|-++...|+||+.|..|++|++..++. ..+.+|.|-.++|+++.|.++++.+++++.
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-------------------~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-------------------ELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchh-------------------hhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 3455667777899999999999999995541 234568889999999999999999999999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
|+.+++|++...+...++ .+|++.|+++.|.. ....+++++.|.+|++||+....+..+. + ....+..|+.++
T Consensus 240 d~~~r~Wnvd~~r~~~TL-sGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l--~~S~cnDI~~~~- 312 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTL-SGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQKAYCSKTV-L--PGSQCNDIVCSI- 312 (459)
T ss_pred CCceeeeeccchhhhhhh-cccccceeeehhhc--cccceeeccccchhhhhhhhhhheeccc-c--ccccccceEecc-
Confidence 999999999999988877 89999999999997 6666999999999999999887665542 2 334566677663
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
..++++-.|++|++||.++..+..... ..+.|+++..+++ +..+++++.|.++.+.|+++.+....
T Consensus 313 --~~~~SgH~DkkvRfwD~Rs~~~~~sv~-----------~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 313 --SDVISGHFDKKVRFWDIRSADKTRSVP-----------LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred --eeeeecccccceEEEeccCCceeeEee-----------cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE
Confidence 568999999999999999998887776 3347999999997 78888889999999999999875443
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
+. ...+... ...+.+.|||++.|+++|+ ++.++||++.+++
T Consensus 379 ~s---------A~g~k~a--sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK--------------------------- 420 (459)
T KOG0288|consen 379 FS---------AEGFKCA--SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK--------------------------- 420 (459)
T ss_pred ee---------ccccccc--cccceeEECCCCceeeeccCCCcEEEEEccCce---------------------------
Confidence 21 1222222 3488999999999999999 6689999999853
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+...+........|++++| +|.|.+|++++.++.+.+|
T Consensus 421 -----------lE~~l~~s~s~~aI~s~~W-~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 421 -----------LEKVLSLSTSNAAITSLSW-NPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -----------EEEEeccCCCCcceEEEEE-cCCCchhhcccCCcceEec
Confidence 4444444443335999999 9999999999999999998
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.4e-31 Score=216.21 Aligned_cols=276 Identities=19% Similarity=0.270 Sum_probs=227.2
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+....++||+.|..+.++|...++.+. .++||...|+.+.|+|+...+++++.|..|+|
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~---------------------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILA---------------------TLKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhh---------------------hccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 335678999999999999999888774 49999999999999999999999999999999
Q ss_pred EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (458)
|........... ..|.++|+.+..+| .|++|++++.||+..+.|++++..+....-....-.+++.+|+||| .+|.
T Consensus 288 ws~~~~s~~~~~-~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifg 363 (506)
T KOG0289|consen 288 WSVPLSSEPTSS-RPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFG 363 (506)
T ss_pred eccccccCcccc-ccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEe
Confidence 998877665544 78999999999999 9999999999999999999999877653332233468999999999 8999
Q ss_pred EecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCC
Q 012712 168 TCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQP 247 (458)
Q Consensus 168 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 247 (458)
+|..||.|++||+..+.....|.. |.++|..++|+.+ |.++++++.|+.|++||+|..+....
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpg----------ht~~vk~i~FsEN-GY~Lat~add~~V~lwDLRKl~n~kt------ 426 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPG----------HTGPVKAISFSEN-GYWLATAADDGSVKLWDLRKLKNFKT------ 426 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCC----------CCCceeEEEeccC-ceEEEEEecCCeEEEEEehhhcccce------
Confidence 999999999999999887766653 6678999999996 89999999999999999998774332
Q ss_pred CCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712 248 ADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (458)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (458)
+.......+.++.|.+.|++|+.++.+ .|++++-.+..
T Consensus 427 --------~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~--------------------------------- 465 (506)
T KOG0289|consen 427 --------IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS--------------------------------- 465 (506)
T ss_pred --------eeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc---------------------------------
Confidence 222234479999999999999998655 56666644321
Q ss_pred cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
...+..+..|.+. .+++.| ..+.+++++++.|..++++.+
T Consensus 466 ---W~~~~~~~~~sg~--st~v~F-g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 466 ---WTEIKELADHSGL--STGVRF-GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---ceeeehhhhcccc--cceeee-cccceEEeeccchhheEEeec
Confidence 3445556566643 677777 889999999999999888764
No 99
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-31 Score=228.43 Aligned_cols=275 Identities=18% Similarity=0.257 Sum_probs=224.6
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 145 (458)
-+.|+ ..+.||.|.. ..|.+|+..++...... ..+...|+++.|++ +|.+|++|..+|.|.|||..+.+.+..
T Consensus 182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~-~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~~k~~~~-- 254 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELC-SFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKEQKKTRT-- 254 (484)
T ss_pred Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeE-ecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhhcccccc--
Confidence 35677 3456777654 57999999988854444 34489999999999 999999999999999999988877765
Q ss_pred ccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 146 LGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 146 ~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
+.. |...|-+++|.. ..+.+|+.|+.|..+|++..+..... ..+ |...|..+.|++| +.++|+|+.
T Consensus 255 ~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~-------~~~--H~qeVCgLkws~d-~~~lASGgn 321 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVST-------LQG--HRQEVCGLKWSPD-GNQLASGGN 321 (484)
T ss_pred ccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhh-------hhc--ccceeeeeEECCC-CCeeccCCC
Confidence 666 999999999994 57899999999999999988765441 112 5557999999998 799999999
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEec---CCcEEEEEccCCCCCCCCCC
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYN---DEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~---~~~i~i~~~~~~~~~~~~~~ 300 (458)
|+.+.|||....+ +......|...|..++|+|- ..+||+|+ |..|++||..++.....
T Consensus 322 DN~~~Iwd~~~~~---------------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~--- 383 (484)
T KOG0305|consen 322 DNVVFIWDGLSPE---------------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS--- 383 (484)
T ss_pred ccceEeccCCCcc---------------ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc---
Confidence 9999999995543 34566778999999999995 56888876 44799999987533222
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEE
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~ 378 (458)
.... ..|.++.| ++..+-|++ |..++.|.||+..+.+++
T Consensus 384 -----------------------------------vdtg---sQVcsL~W-sk~~kEi~sthG~s~n~i~lw~~ps~~~~ 424 (484)
T KOG0305|consen 384 -----------------------------------VDTG---SQVCSLIW-SKKYKELLSTHGYSENQITLWKYPSMKLV 424 (484)
T ss_pred -----------------------------------cccC---CceeeEEE-cCCCCEEEEecCCCCCcEEEEecccccee
Confidence 2211 24899999 998876665 456789999999999999
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 425 ~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 425 AELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999999999999999999999999999999999998764
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-31 Score=217.42 Aligned_cols=306 Identities=19% Similarity=0.172 Sum_probs=227.2
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.++.+|+.++.++++.|++|.=|++.+|+......-.-..... .-..++..+ ++|...|.+++.|+||+|||+|+.|
T Consensus 147 ~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~-~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 147 SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS-HGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhh-ccCCCCccc--ccccceeEEEEEcCCCcEEEecCCC
Confidence 3568999999999999999999999999865321111000000 000111111 4899999999999999999999999
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
..|.||+.++.+.+..+ .+|.+.|.+++|-. ....|++++.|+.|++|++.....+.+ +.+|.+.|..+....-+
T Consensus 224 ~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vet--lyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVET--LYGHQDGVLGIDALSRE 298 (479)
T ss_pred ceEEEecCcccchhhcc-cccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHH--HhCCccceeeechhccc
Confidence 99999999999998887 89999999999998 788999999999999999988777766 88999999999888776
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
..+-+|+.|+++++|++..... ..+.. +.+.+.|++|-.+ ..|++|+.+|.|.+|++.+.+.+...
T Consensus 299 -R~vtVGgrDrT~rlwKi~eesq-lifrg----------~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 299 -RCVTVGGRDRTVRLWKIPEESQ-LIFRG----------GEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred -ceEEeccccceeEEEeccccce-eeeeC----------CCCCeeeEEEecc--cceeeccCCceEEEeeecccCceeEe
Confidence 5556666999999999943322 22221 4457899999865 68999999999999999988766554
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
....++.... -...++..|++++..|...++++|+ ++.+++|.+..+..
T Consensus 365 ~~AHgv~~~~---~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--------------------------- 414 (479)
T KOG0299|consen 365 RLAHGVIPEL---DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--------------------------- 414 (479)
T ss_pred eccccccCCc---cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc---------------------------
Confidence 4433322110 0111235899999999999999999 67899999987632
Q ss_pred CCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEE
Q 012712 322 PSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWK 371 (458)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd 371 (458)
.+..+..-.-...|++++| +++|+++++| +....+--|-
T Consensus 415 ----------~i~~l~~ls~~GfVNsl~f-~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 415 ----------AINLLYSLSLVGFVNSLAF-SNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ----------ccceeeecccccEEEEEEE-ccCCCEEEEecccccccceee
Confidence 1222222222336999998 9999966654 4455554444
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.5e-31 Score=235.33 Aligned_cols=273 Identities=19% Similarity=0.257 Sum_probs=234.4
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
|...+.+..|. ..++++++.|++|++||..++..+..-+.+|.+.|.++++.. .+.+|++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCCCc
Confidence 56788899988 557999999999999999999988884589999999999986 78999999999999999999998
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
+... +.+|...+.++...+ ..+++|+.|.+|++|+++++..+..+.. +..+|.++..+ +.++
T Consensus 283 C~~~--l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~----------h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 283 CTHS--LQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRG----------HTGPVNCVQLD---EPLL 344 (537)
T ss_pred EEEE--ecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEecc----------ccccEEEEEec---CCEE
Confidence 8876 889999999998877 5688999999999999999998887764 45589999997 3599
Q ss_pred EEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712 220 AVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~ 299 (458)
++|+.|++|.+||+.+.+
T Consensus 345 vsgs~d~~v~VW~~~~~~-------------------------------------------------------------- 362 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGK-------------------------------------------------------------- 362 (537)
T ss_pred EEEecCceEEEEEhhhce--------------------------------------------------------------
Confidence 999999999999997543
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELI 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~ 378 (458)
+++.+.+|... |.++.+ .+. ..+++|+.|++|++||+.+. +++
T Consensus 363 --------------------------------cl~sl~gH~~~--V~sl~~-~~~-~~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 363 --------------------------------CLKSLSGHTGR--VYSLIV-DSE-NRLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred --------------------------------eeeeecCCcce--EEEEEe-cCc-ceEEeeeeccceEeecCCchhhhh
Confidence 45566777774 788876 444 89999999999999999999 999
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-c-ccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-T-NIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~-~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.++.+|...+..+.+ .+++|++++.|++|++||..+++++... . |.+.|.++++. ...+++++.||.+.+||+-
T Consensus 407 ~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred hhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 999999998876665 6789999999999999999999887443 3 45778888877 5677788999999999863
No 102
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=222.26 Aligned_cols=254 Identities=31% Similarity=0.587 Sum_probs=191.5
Q ss_pred ccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE
Q 012712 43 ASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV 122 (458)
Q Consensus 43 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 122 (458)
+......++.+.+.|.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.++.+..+|...|.++.|-|..+.+.++
T Consensus 32 ~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 32 GNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred cccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEE
Confidence 44555667888899999999999999999999999999999999999998899999999999999999999988889999
Q ss_pred EEcCCCcEEEeeccccc--------ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceee-ecc
Q 012712 123 TCAADGQVRHAQILERG--------GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFT-CRP 193 (458)
Q Consensus 123 s~~~dg~i~vw~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~ 193 (458)
+|..|..|+++|+...+ ......+..|...|..++-.|++++.+.++++||+|+-+|++.......-. ++.
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 99999999999997522 223344778999999999999999999999999999999999754321111 100
Q ss_pred cCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc----CCCccCCCC-----CCCcCCCcccccc----
Q 012712 194 IDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW----DGSTDFGQP-----ADYFCPPNLIGDE---- 260 (458)
Q Consensus 194 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~---- 260 (458)
.. ..-+..-....|+..+|.++.+|++|+.|-..++||.+.... .......+| +.++++..+....
T Consensus 192 ~l-~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 192 IL-VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HH-HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 00 000002235789999999999999999999999999543221 111222233 4455555542111
Q ss_pred --ccceeEEEeCCCCc-EEEEecCCcEEEEEccCCCCCCC
Q 012712 261 --QVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNP 297 (458)
Q Consensus 261 --~~~i~~~~~~~~~~-~l~~~~~~~i~i~~~~~~~~~~~ 297 (458)
...++-+.|+|+|. +|++-+.+.|+++|+..++...+
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 12256788999986 55666677899999987764433
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=203.85 Aligned_cols=265 Identities=15% Similarity=0.194 Sum_probs=211.5
Q ss_pred EEEecCCCeEEEEECCCcc------------eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 76 LISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
+++|++...|.-+++.-.. ++..+ ..|.+.|++++. ++.++|+|+.|-+|+|||+........
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~-~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ 78 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF-SAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGI 78 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc-cccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcc
Confidence 5667777666666654221 12233 679999999999 689999999999999999988877665
Q ss_pred eeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 144 KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
+-.|.+.|+++.|.+.- ...|++|+.||.|.+|+...-.++..++. +...|+.++.+|. +++.++.
T Consensus 79 --ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~----------H~~~Vt~lsiHPS-~KLALsV 145 (362)
T KOG0294|consen 79 --LLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA----------HKGQVTDLSIHPS-GKLALSV 145 (362)
T ss_pred --eeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc----------cccccceeEecCC-CceEEEE
Confidence 77799999999999865 23689999999999999998877777764 4456999999998 7899999
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 302 (458)
+.|+.++.||+-.++......+ ....+.+.|+|.|.+++....+.|-+|.+.+......
T Consensus 146 g~D~~lr~WNLV~Gr~a~v~~L----------------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~----- 204 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRVAFVLNL----------------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE----- 204 (362)
T ss_pred cCCceeeeehhhcCccceeecc----------------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh-----
Confidence 9999999999988874322111 2233459999999999999999999999887432211
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE 382 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 382 (458)
+. .+..+.++.| -++.+|++|++|+.|.+||..+..+...+.
T Consensus 205 ---------------------------------i~---~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~ 246 (362)
T KOG0294|consen 205 ---------------------------------IE---NPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFL 246 (362)
T ss_pred ---------------------------------hh---ccccceeeee--cCCceEEEecCCceEEEeccCCCccceeee
Confidence 11 1123566666 367799999999999999999999999999
Q ss_pred cCCceeeEEEe--cCCCCeEEEeecCCcEEEecCCcc
Q 012712 383 ADRHVVNCIEP--HPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 383 ~~~~~v~~~~~--s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+|...|.++.+ .|++.+|+|+|.||.|++||++..
T Consensus 247 AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 247 AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99999999984 577899999999999999999876
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-29 Score=186.82 Aligned_cols=298 Identities=15% Similarity=0.254 Sum_probs=229.3
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC------cc--------eeeeeccCCCcceeEEEEccC
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ER--------VKLSFHSGHNDNVFQAKIMPF 115 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~--------~~~~~~~~~~~~i~~~~~~~~ 115 (458)
.++.+..+. ....|++++|+|.|.+.|.|+...+.+|-.... +. ....-.+.|.+.|+|.+|+|
T Consensus 22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~- 99 (350)
T KOG0641|consen 22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP- 99 (350)
T ss_pred ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-
Confidence 445555555 567899999999999999999999998864321 11 11112256899999999999
Q ss_pred CCCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCC---CCeEEEEec-CCCeEEEEeCCCCCccce
Q 012712 116 TDDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPG---SPHVFYTCG-EDGLVQHFDLRTGAATEL 188 (458)
Q Consensus 116 ~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 188 (458)
+|++|++|+.|.+|++..++..... ....+..|.+.|..++|..+ +..+|++++ .|..|++-|..+++....
T Consensus 100 -~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a 178 (350)
T KOG0641|consen 100 -CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA 178 (350)
T ss_pred -ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee
Confidence 9999999999999999877554322 12346779999999999643 335677665 467788888888877666
Q ss_pred eeecccCCCCcceeecceEEE-EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEE
Q 012712 189 FTCRPIDDRRNYMTVVNLNAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (458)
+.. +.+.|.++ .|+ +.++++|+.|.+|++||++-... |+.+
T Consensus 179 ~sg----------htghilalyswn---~~m~~sgsqdktirfwdlrv~~~-------------------------v~~l 220 (350)
T KOG0641|consen 179 LSG----------HTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSC-------------------------VNTL 220 (350)
T ss_pred ecC----------CcccEEEEEEec---CcEEEccCCCceEEEEeeeccce-------------------------eeec
Confidence 543 33345554 343 67999999999999999986431 1111
Q ss_pred E--eCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712 268 A--FSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (458)
Q Consensus 268 ~--~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (458)
. |... +-+ ...|
T Consensus 221 ~~~~~~~-----------------------------------------------------------------gle-ssav 234 (350)
T KOG0641|consen 221 DNDFHDG-----------------------------------------------------------------GLE-SSAV 234 (350)
T ss_pred cCcccCC-----------------------------------------------------------------Ccc-ccee
Confidence 0 0000 001 1137
Q ss_pred eEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-----c
Q 012712 346 KGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-----A 420 (458)
Q Consensus 346 ~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-----~ 420 (458)
.+++. +|.|++|++|-.|....+||+..++.++.+..|...|.++.|+|...+|.+++.|..|++=|+..... .
T Consensus 235 aav~v-dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 235 AAVAV-DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EEEEE-CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 88888 99999999999999999999999999999999999999999999999999999999999999986522 2
Q ss_pred ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 421 TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 421 ~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.+..|...+..+.|.|..--+++.+.|.++.+|-+
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 44678888999999999977889999999999975
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.5e-31 Score=220.85 Aligned_cols=303 Identities=12% Similarity=0.109 Sum_probs=226.9
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH 177 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i 177 (458)
.+|+..|.++++.| .|..|++|+.|..|++||+...... ...........|+++.|++.+. .|++.+.....++
T Consensus 164 ~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~-~iLvvsg~aqakl 240 (641)
T KOG0772|consen 164 KHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD-QILVVSGSAQAKL 240 (641)
T ss_pred cCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC-eEEEEecCcceeE
Confidence 67888999999999 9999999999999999999654321 1122344567899999999995 5555565677899
Q ss_pred EeCCCCCccceeee----cccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 178 FDLRTGAATELFTC----RPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 178 wd~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
+|-...+.....+. ......++ |...++|.+|+|++...|++++.||++++||+...+...+. + .
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKG--Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV--------i-k 309 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKG--HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV--------I-K 309 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCC--ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE--------E-e
Confidence 98654443332221 11222344 55579999999999999999999999999999876532110 0 0
Q ss_pred CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
.....+...+++.++|+|+|++||++. +|.|.+|+...... ...
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v-----------------------------------~p~ 354 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV-----------------------------------RPV 354 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc-----------------------------------ccc
Confidence 112234567889999999999999988 66899999754221 223
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-eEEEEeecC--CceeeEEEecCCCCeEEEeec----
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-ELIRVIEAD--RHVVNCIEPHPHSTVLASSGI---- 405 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~---- 405 (458)
...-..|.....|+++.| |+||++|++-+.|+++++||+... +++.+..+- .-+-+.++|||+.++|++|..
T Consensus 355 ~~vk~AH~~g~~Itsi~F-S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 355 MKVKDAHLPGQDITSISF-SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred eEeeeccCCCCceeEEEe-ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 444557777667999999 999999999999999999999765 445444332 234678999999999999853
Q ss_pred --CCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 406 --ESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 406 --d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
.|++.+||..+-+.. .+.-....|..+.|+|.-+.+..++.||.+++|
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred CCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 578999998877654 444446679999999999999999999999886
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=227.22 Aligned_cols=336 Identities=17% Similarity=0.221 Sum_probs=254.9
Q ss_pred cCCCceE---EEEEec-CCCEEEEecCCCeEEEEECCCcce------eeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 59 KHRGCVN---TVSFNT-DGDILISGSDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 59 ~h~~~v~---~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
.|...|. ++..+. .+++|.|||.||.|++|++..... ...+ ..|...|+.+...- +++.|++++.|-
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~--~~~tlIS~SsDt 95 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCG--NGKTLISASSDT 95 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhc--CCCceEEecCCc
Confidence 3445555 455544 567899999999999999864332 3334 67999999999988 999999999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEE-cCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCC-cceeec
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAI-EPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRR-NYMTVV 204 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~-~~~~~~ 204 (458)
+|++|+...+.......+..|.+.|.|+++ .++. .++++|+-|+.|.+||++++.. +..+......... + +..
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG--~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG--PKD 172 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC--Ccc
Confidence 999999987753444458899999999999 5665 7899999999999999998833 3322222221111 2 455
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (458)
.+++++-++. +..|++|+.++.+++||.++.+. .....+|...|..+..++||..+++++ |++
T Consensus 173 siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~k---------------imkLrGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 173 SIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKK---------------IMKLRGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred ceeeeecCCc-ceEEEecCcccceEEeccccccc---------------eeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence 7999999997 68999999999999999999863 223447899999999999999888877 668
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
|++||+.. ..++.++..|... +.++.. +|+-.++++|+.
T Consensus 237 IrlWdLgq--------------------------------------QrCl~T~~vH~e~--VWaL~~-~~sf~~vYsG~r 275 (735)
T KOG0308|consen 237 IRLWDLGQ--------------------------------------QRCLATYIVHKEG--VWALQS-SPSFTHVYSGGR 275 (735)
T ss_pred EEeeeccc--------------------------------------cceeeeEEeccCc--eEEEee-CCCcceEEecCC
Confidence 99999987 6778888889886 888888 999999999999
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc---------------------
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL--------------------- 422 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~--------------------- 422 (458)
||.|+.=|+.+......+-....+|..+..+.+.+-+-++..|+.|+-|.....-.+..
T Consensus 276 d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~t 355 (735)
T KOG0308|consen 276 DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNT 355 (735)
T ss_pred CCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCC
Confidence 99999999988544333434556788887775555556677789999997653211100
Q ss_pred ----ccccccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 423 ----PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 423 ----~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
......+...+.-.|.+.++|-...|.+.+||.+.
T Consensus 356 p~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 356 PDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred CceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 11111233444455778999999999999999874
No 107
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-31 Score=198.96 Aligned_cols=253 Identities=19% Similarity=0.209 Sum_probs=198.2
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEE
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILIS 78 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s 78 (458)
|+|+...-.|++|||+++|++|||+.+..+.. .+++.+|.||.++|..++|.. .|.+||+
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------SKLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------ceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 45666667799999999999999999985432 245678999999999999976 7899999
Q ss_pred ecCCCeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc-cceeeeeccccccceEEE
Q 012712 79 GSDDRRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER-GGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~v~~~ 156 (458)
++.||.|.||.-++++-.+.. ...|...|++++|.|+.-|-.|+.++.||.|.+.++++. .....+....|.-.|+++
T Consensus 76 csYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsV 155 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSV 155 (299)
T ss_pred eecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccccee
Confidence 999999999998877532221 267999999999999877889999999999999999876 444445578899999999
Q ss_pred EEcCC---C----------CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC---CcEEE
Q 012712 157 AIEPG---S----------PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN---ANLFA 220 (458)
Q Consensus 157 ~~~~~---~----------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~ 220 (458)
+|.|. | .+.|++|+.|..|++|+...++-+..-. +++ |...|+.++|.|.. ...++
T Consensus 156 swapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~------l~~--H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 156 SWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERT------LEG--HKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred eecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhh------hhh--cchhhhhhhhccccCCCceeeE
Confidence 99986 2 1459999999999999998874322111 122 55689999999973 25899
Q ss_pred EecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 221 VAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
+++.||++.||..+.....- ...+.......+..+.|++.|.+|+.++ ++.+.+|.-+.
T Consensus 228 S~SqDg~viIwt~~~e~e~w------------k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEPW------------KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCCcEEEEEecCccCcc------------cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99999999999887321111 1223333456799999999999998877 55799998654
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.9e-30 Score=199.58 Aligned_cols=273 Identities=15% Similarity=0.141 Sum_probs=207.4
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
......|.+++|||. ...+++.++.||+||+|++........+....|.++|.+++|+.+| ..+++|+.|+.+++||+
T Consensus 24 ~pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CCcccchheeEeccc-cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence 456788999999993 5566778899999999999875443335567899999999999999 67899999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCc--EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN--LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
.+++..+.-. |..+|.++.|-+. .. .|++|+.|.+|+.||.|....+..+++
T Consensus 102 ~S~Q~~~v~~-----------Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-------------- 155 (347)
T KOG0647|consen 102 ASGQVSQVAA-----------HDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-------------- 155 (347)
T ss_pred cCCCeeeeee-----------cccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeeeec--------------
Confidence 9996655443 7778999999874 44 789999999999999998764433222
Q ss_pred ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 259 DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
...+.++.. ...+++.+. +..|.+|+++++..... ...
T Consensus 156 --PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k-------------------------------------~~~ 194 (347)
T KOG0647|consen 156 --PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFK-------------------------------------RIE 194 (347)
T ss_pred --cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhh-------------------------------------hhc
Confidence 123333322 233555555 56899999977432111 111
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eEEEEeecCCc---------eeeEEEecCCCCeEEEeecC
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--ELIRVIEADRH---------VVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~d 406 (458)
..- .-.+++++. -+|....+.|+-+|++.|..+..+ +.-.+++.|.. .|++++|+|.-..|+|+|.|
T Consensus 195 SpL-k~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 195 SPL-KWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred Ccc-cceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCC
Confidence 111 113788887 567777799999999999999887 44456777762 48899999999999999999
Q ss_pred CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEee
Q 012712 407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQ 444 (458)
Q Consensus 407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~ 444 (458)
|++.+||-+....+ ....|..+|++.+|+.+|.++|.+
T Consensus 273 Gtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 273 GTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 99999999877555 558899999999999999888754
No 109
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.6e-30 Score=210.95 Aligned_cols=296 Identities=19% Similarity=0.233 Sum_probs=228.0
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeee----------------ec-cCCCcceeEEEEccCC
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLS----------------FH-SGHNDNVFQAKIMPFT 116 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------~~-~~~~~~i~~~~~~~~~ 116 (458)
+..+..|.-+|.+++++|+.++.++++.+++|.=|++.++..... .. ..|...+.+++.+|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-- 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-- 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC--
Confidence 456778999999999999999999999999999999987763210 11 26888999999999
Q ss_pred CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (458)
|+++|++|+.|..|.||+..+.+.+.. +.+|.+.|.+++|-..- +.+++++.|+.|++|+++....+.++..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyG----- 284 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYG----- 284 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhC-----
Confidence 999999999999999999999888776 89999999999998755 6789999999999999999888777654
Q ss_pred CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (458)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (458)
|...|..+.-... ...+-+|+.|+++++|++.... +.+..++.+.+.|++|-.+.. +
T Consensus 285 -----Hqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~ees----------------qlifrg~~~sidcv~~In~~H-f 341 (479)
T KOG0299|consen 285 -----HQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEES----------------QLIFRGGEGSIDCVAFINDEH-F 341 (479)
T ss_pred -----Cccceeeechhcc-cceEEeccccceeEEEeccccc----------------eeeeeCCCCCeeeEEEecccc-e
Confidence 4456888877665 5677777799999999995432 335556678999999987765 5
Q ss_pred EEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 277 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
++|+ +|.|.+|++...+........ ......+..-..+.+|++++. .|..
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~A----------------------------Hgv~~~~~~~~~~~Witsla~-i~~s 392 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLA----------------------------HGVIPELDPVNGNFWITSLAV-IPGS 392 (479)
T ss_pred eeccCCceEEEeeecccCceeEeecc----------------------------ccccCCccccccccceeeeEe-cccC
Confidence 5555 668999999876543332100 000000011111136999998 8999
Q ss_pred cEEEEecCCCeEEEEEecCC----eEEEEeecCCceeeEEEecCCCCeEEEe-ecCCcEEEe
Q 012712 356 EYVVSGSDCGRIFIWKKKGG----ELIRVIEADRHVVNCIEPHPHSTVLASS-GIESDIKIL 412 (458)
Q Consensus 356 ~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw 412 (458)
.++|+|+.+|.|++|-+.++ +++..+. -.+.|++++|+++|+.|++| +....+-=|
T Consensus 393 dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 393 DLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 99999999999999999887 3444454 56789999999999966554 545444444
No 110
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.3e-29 Score=225.18 Aligned_cols=251 Identities=12% Similarity=0.116 Sum_probs=184.1
Q ss_pred ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccce------eeeecccccc
Q 012712 79 GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGV------ETKLLGKHQG 151 (458)
Q Consensus 79 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~------~~~~~~~~~~ 151 (458)
|+.++.|++|+......+..+ .+|.+.|.+++|+| + +.+|++|+.||.|++||+.++... ....+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP--~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNP--CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcC--CCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999998776665655 79999999999999 6 789999999999999999764321 1123678999
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.|.+++|+|++..+|++++.|+.|++||+++++....+. +...|.+++|+|+ +.+|++++.|+.|++|
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-----------~~~~V~Slswspd-G~lLat~s~D~~IrIw 194 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-----------MPKKLSSLKWNIK-GNLLSGTCVGKHMHII 194 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-----------cCCcEEEEEECCC-CCEEEEEecCCEEEEE
Confidence 999999999986677899999999999999987654443 2236899999998 7899999999999999
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccce-----eEEEeCCCCcEEEEec-CC----cEEEEEccCCCCCCCCCCC
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-----TGLAFSDQSELLVSYN-DE----FIYLFTQDMGLGPNPPPSS 301 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~~~~~~~~~~ 301 (458)
|+++++... ....|.+.+ ....|++++.+|++++ ++ .|++||++..
T Consensus 195 D~Rsg~~i~---------------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------- 250 (568)
T PTZ00420 195 DPRKQEIAS---------------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------- 250 (568)
T ss_pred ECCCCcEEE---------------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC---------
Confidence 999876422 223344433 2334568888888765 43 5999998852
Q ss_pred CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 381 (458)
..++..+..+.....+... +..++|.++++|+.|+.|++|++..+. +..+
T Consensus 251 ----------------------------~~pl~~~~ld~~~~~L~p~-~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l 300 (568)
T PTZ00420 251 ----------------------------TSALVTMSIDNASAPLIPH-YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKV 300 (568)
T ss_pred ----------------------------CCceEEEEecCCccceEEe-eeCCCCCEEEEEECCCeEEEEEccCCc-EEee
Confidence 1122222222221112222 325668899999999999999997764 2333
Q ss_pred ec--CCceeeEEEecCCCC
Q 012712 382 EA--DRHVVNCIEPHPHST 398 (458)
Q Consensus 382 ~~--~~~~v~~~~~s~~~~ 398 (458)
.. +..++.+++|.|+..
T Consensus 301 ~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 301 NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred cccccCCCccceEEccccc
Confidence 22 556788999999753
No 111
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=1.4e-29 Score=225.70 Aligned_cols=271 Identities=15% Similarity=0.214 Sum_probs=194.9
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee------------eeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL------------SFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
|-..|+....++|+..+++++.+.....|+...+..+. ..+.+|.+.|.+++|+|+ ++++|++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 44556667777787777778877777788765443221 123689999999999984 56799999999
Q ss_pred CcEEEeecccccc-----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 128 GQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 128 g~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
++|++||+.++.. .....+.+|...|.+++|+|++.++|++++.|+.|++||+++++....+.. +
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----------h 167 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----------H 167 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----------C
Confidence 9999999976532 122347889999999999998767899999999999999998876655532 3
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
...|.+++|+|+ +.+|++++.|+.|++||+++++. +.
T Consensus 168 ~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~~-------------------------v~----------------- 204 (493)
T PTZ00421 168 SDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGTI-------------------------VS----------------- 204 (493)
T ss_pred CCceEEEEEECC-CCEEEEecCCCEEEEEECCCCcE-------------------------EE-----------------
Confidence 447999999997 78999999999999999987531 10
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
.+.+|... ....+.| .+++..+++++
T Consensus 205 ----------------------------------------------------tl~~H~~~-~~~~~~w-~~~~~~ivt~G 230 (493)
T PTZ00421 205 ----------------------------------------------------SVEAHASA-KSQRCLW-AKRKDLIITLG 230 (493)
T ss_pred ----------------------------------------------------EEecCCCC-cceEEEE-cCCCCeEEEEe
Confidence 11112111 0223344 66666666543
Q ss_pred ----CCCeEEEEEecCCe-EEEEeecC-CceeeEEEecCCCCeEEEee-cCCcEEEecCCcccccccc--cccccEEEEE
Q 012712 363 ----DCGRIFIWKKKGGE-LIRVIEAD-RHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLP--TNIEQVCFSI 433 (458)
Q Consensus 363 ----~dg~i~iwd~~~~~-~~~~~~~~-~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~--~~~~~v~~~~ 433 (458)
.|+.|++||+.+.. ++.....+ ...+....|++++++|++++ .|+.|++|++.+++..... .+...+..++
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~ 310 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLC 310 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceE
Confidence 57999999997654 44444333 33566678999999999887 5999999999988765332 2334577777
Q ss_pred EecCC
Q 012712 434 YSADY 438 (458)
Q Consensus 434 ~s~d~ 438 (458)
|.|.-
T Consensus 311 ~~pk~ 315 (493)
T PTZ00421 311 MMPKW 315 (493)
T ss_pred ecccc
Confidence 77743
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.98 E-value=1.4e-30 Score=215.87 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=237.8
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
.+.+| .|.+-|.++.+|...+++.||+. |.|+|||+.... ++..+. ....+-|.++...| ||+.|++|++-.
T Consensus 412 q~~tL-~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivGGeas 487 (705)
T KOG0639|consen 412 QINTL-AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVGGEAS 487 (705)
T ss_pred hhhhh-ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEeccccc
Confidence 33444 49999999999999999999987 779999996542 122220 12356788999999 999999999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
++.|||+..........+....-...+++.+||. ++.+++..||.|.|||+.....+..++. +...+.|
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqG----------htDGasc 556 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----------HTDGASC 556 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccC----------CCCCcee
Confidence 9999999887665444455555567889999999 7899999999999999999988888764 4446899
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
+.++++ |..|.+|+-|.+||.||+++++...+
T Consensus 557 Idis~d-GtklWTGGlDntvRcWDlregrqlqq----------------------------------------------- 588 (705)
T KOG0639|consen 557 IDISKD-GTKLWTGGLDNTVRCWDLREGRQLQQ----------------------------------------------- 588 (705)
T ss_pred EEecCC-CceeecCCCccceeehhhhhhhhhhh-----------------------------------------------
Confidence 999998 79999999999999999998753221
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
|.-...|.++.+ +|.+.+|+.|-+++.+.
T Consensus 589 --------------------------------------------------hdF~SQIfSLg~-cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 589 --------------------------------------------------HDFSSQIFSLGY-CPTGDWLAVGMENSNVE 617 (705)
T ss_pred --------------------------------------------------hhhhhhheeccc-CCCccceeeecccCcEE
Confidence 111113677777 89999999999999998
Q ss_pred EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCC
Q 012712 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSC 448 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~ 448 (458)
+... ++.....+.-|...|.++.|.+.|+++++.+.|+.+..|...-|..+........|.++..|.|.++++||+.|.
T Consensus 618 vlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdk 696 (705)
T KOG0639|consen 618 VLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDK 696 (705)
T ss_pred EEec-CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCc
Confidence 8876 444455677799999999999999999999999999999999887777777788899999999999999999999
Q ss_pred ceEEEEEec
Q 012712 449 SILLFEWLV 457 (458)
Q Consensus 449 ~i~~w~~~~ 457 (458)
.-.||+.++
T Consensus 697 kATVYeV~Y 705 (705)
T KOG0639|consen 697 KATVYEVIY 705 (705)
T ss_pred ceEEEEEeC
Confidence 999998763
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=7.4e-30 Score=209.05 Aligned_cols=259 Identities=18% Similarity=0.305 Sum_probs=200.1
Q ss_pred EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcceee---------eeccCCCcceeEEEEccCCCCe
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERVKL---------SFHSGHNDNVFQAKIMPFTDDR 119 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~ 119 (458)
+++..+.+ .|.+.|+.+++.|+. ..+|+.+..+.|.|||..+..... ..+.+|...-++++|++. ..-
T Consensus 114 ~v~i~~~i-~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~-~~g 191 (422)
T KOG0264|consen 114 KVEISQKI-NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ-QEG 191 (422)
T ss_pred ceEEEEec-cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc-cce
Confidence 34444444 499999999999976 567778888999999986532211 123789988899999985 556
Q ss_pred EEEEEcCCCcEEEeecccccc-----eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC--Cccceeeec
Q 012712 120 SIVTCAADGQVRHAQILERGG-----VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG--AATELFTCR 192 (458)
Q Consensus 120 ~l~s~~~dg~i~vw~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~ 192 (458)
.|++++.|+.|++||+..... .....+.+|...|..++|+|....+|.+++.|+.+.|||+|++ ++.....
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-- 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-- 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc--
Confidence 799999999999999976443 2344578999999999999998899999999999999999963 2222211
Q ss_pred ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (458)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (458)
.+..++.|++|+|-++.+||+|+.|++|.+||+|+.+.
T Consensus 270 --------ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---------------------------------- 307 (422)
T KOG0264|consen 270 --------AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---------------------------------- 307 (422)
T ss_pred --------ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------------------------------
Confidence 16678999999999899999999999999999998641
Q ss_pred CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEec
Q 012712 273 SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFG 352 (458)
Q Consensus 273 ~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 352 (458)
++..+.+|... |..+.| +
T Consensus 308 -----------------------------------------------------------~lh~~e~H~de--v~~V~W-S 325 (422)
T KOG0264|consen 308 -----------------------------------------------------------PLHTFEGHEDE--VFQVEW-S 325 (422)
T ss_pred -----------------------------------------------------------CceeccCCCcc--eEEEEe-C
Confidence 23344455553 666776 6
Q ss_pred CCC-cEEEEecCCCeEEEEEecCC--------------eEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCc
Q 012712 353 PKC-EYVVSGSDCGRIFIWKKKGG--------------ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNA 416 (458)
Q Consensus 353 ~~~-~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~ 416 (458)
|+. ..||+++.|+++.+||+..- +++..-.||...|..+.|+|+.. .|+++++|+.+.||+...
T Consensus 326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 654 46677788888888887431 34456678999999999999887 467889999999999764
No 114
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.6e-28 Score=181.90 Aligned_cols=301 Identities=15% Similarity=0.204 Sum_probs=211.5
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
|..|.|.|.|++.++|+...+.||-....-..++. .+-+.. ....-+.++-+.|++.|.|.+|||+|++||+|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~--~hea~~----~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH--AHEAAK----QPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCccc--cccccc----CCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 46788999999999999999999876652211111 000000 000122334567999999999999999999999
Q ss_pred CCCeEEEEECCCcce-----eeeeccCCCcceeEEEEcc--CCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccc
Q 012712 81 DDRRVILWDWKTERV-----KLSFHSGHNDNVFQAKIMP--FTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~-----~~~~~~~~~~~i~~~~~~~--~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
.|.+|++-.+....+ -.++ .-|.+.|..++|.. ...+..|++++. |..|.+-|...++.... +.+|++.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a--~sghtgh 185 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHA--LSGHTGH 185 (350)
T ss_pred CCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCccee--ecCCccc
Confidence 999999976654332 1333 56999999999974 224567777664 77787778877777655 8899999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
|.++- +-++ -++++|+.|.+|++||++-..++..+..... .+-..
T Consensus 186 ilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~---~~gle------------------------------ 230 (350)
T KOG0641|consen 186 ILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH---DGGLE------------------------------ 230 (350)
T ss_pred EEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc---CCCcc------------------------------
Confidence 98763 3344 6899999999999999987765544321100 00001
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
...|.+++..|.|++|++|..+ ...+||++.
T Consensus 231 ----------------------------ssavaav~vdpsgrll~sg~~dssc~lydirg-------------------- 262 (350)
T KOG0641|consen 231 ----------------------------SSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-------------------- 262 (350)
T ss_pred ----------------------------cceeEEEEECCCcceeeeccCCCceEEEEeeC--------------------
Confidence 1234555555555555555533 455555554
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE-----EEEeecCCc
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-----IRVIEADRH 386 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~ 386 (458)
...++.+..|... |.++.| +|...|+++++.|..|++-|+. |.+ +-....|..
T Consensus 263 ------------------~r~iq~f~phsad--ir~vrf-sp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkd 320 (350)
T KOG0641|consen 263 ------------------GRMIQRFHPHSAD--IRCVRF-SPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKD 320 (350)
T ss_pred ------------------CceeeeeCCCccc--eeEEEe-CCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccC
Confidence 3445666667664 899998 9999999999999999999984 332 234456888
Q ss_pred eeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 387 VVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 387 ~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
.+..+.|+|..--+++.+.|.++.+|.+.
T Consensus 321 k~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 321 KAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecCccceeeeccCcceEEEeccC
Confidence 89999999999899999999999999764
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.2e-30 Score=194.95 Aligned_cols=269 Identities=19% Similarity=0.265 Sum_probs=207.0
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEc-CCCCeEEEEecCCCe
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIE-PGSPHVFYTCGEDGL 174 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~-~~~~~~l~s~~~dg~ 174 (458)
.++...|...|.++...- -|+.|+||+.|++|+|+.++.+.. .....+.+|.++|..++|. |.-..+|++++.||.
T Consensus 4 q~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred eehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 344567888898888776 899999999999999999988765 4455699999999999995 443389999999999
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
|.||.-++++-.+.... .. +...|++++|.|.+ +-.|++++.||.|.+.+.+.... ...
T Consensus 82 VIiWke~~g~w~k~~e~------~~--h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~------------w~t 141 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEH------AA--HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG------------WTT 141 (299)
T ss_pred EEEEecCCCchhhhhhh------hh--hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC------------ccc
Confidence 99999888854433321 11 56689999999963 46789999999999999887521 122
Q ss_pred CccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
..+...|.-.+++++|.|... .
T Consensus 142 ~ki~~aH~~GvnsVswapa~~----------------------------------------------------------~ 163 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASA----------------------------------------------------------P 163 (299)
T ss_pred hhhhhccccccceeeecCcCC----------------------------------------------------------C
Confidence 445667888899999988520 0
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eEEEEeecCCceeeEEEecCCC----CeEEEeecCC
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--ELIRVIEADRHVVNCIEPHPHS----TVLASSGIES 407 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~----~~l~s~~~d~ 407 (458)
..+..|... .+ -+.|++|+.|..|+||+..++ +..++|++|.+.|+.++|.|.- .+||+++.||
T Consensus 164 g~~~~~~~~---------~~-~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg 233 (299)
T KOG1332|consen 164 GSLVDQGPA---------AK-VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG 233 (299)
T ss_pred ccccccCcc---------cc-cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence 001111110 11 357899999999999998775 3446689999999999999974 4799999999
Q ss_pred cEEEecCCcc----cccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 408 DIKILTPNAA----DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 408 ~i~iw~~~~~----~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
++.||..... +...+......+..+.||+.|..|+.++.|+.|.+|.-
T Consensus 234 ~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 234 TVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 9999987632 22234445667999999999999999999999999974
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2e-29 Score=216.91 Aligned_cols=283 Identities=19% Similarity=0.252 Sum_probs=233.2
Q ss_pred eeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceee-eeccCCCcceeE-EEEccCCCCeEEEEEcCCC
Q 012712 51 LGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQ-AKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 51 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~-~~~~~~~~~~~l~s~~~dg 128 (458)
+++.+.+.||+..|..+++.+. ..++++|.||++++|+-..++.+. ....+|.+.|.. ++|.+ .++..|++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence 4667889999999999998754 478999999999999976555433 333667788877 88886 3677899999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.|.+|......+... +.+|...|.+++...++ . +++|+.|.++++|-... +...+. + |...|.+
T Consensus 82 ~i~v~~~~~~~P~~~--LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~--l~~~l~--------g--H~asVWA 145 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYT--LKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGE--LVYSLQ--------G--HTASVWA 145 (745)
T ss_pred eEEEEecCCCCchhh--hhccccceeeeecCCcC-c-eEecccccceEEecchh--hhcccC--------C--cchheee
Confidence 999999988887766 99999999999988887 3 89999999999996543 333332 2 5668999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
++.-|+ +.+++|+.|.+|++|.-.+. ...+.+|...|+.+++-+++.++-++.|+.|++|+
T Consensus 146 v~~l~e--~~~vTgsaDKtIklWk~~~~-----------------l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~ 206 (745)
T KOG0301|consen 146 VASLPE--NTYVTGSADKTIKLWKGGTL-----------------LKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWD 206 (745)
T ss_pred eeecCC--CcEEeccCcceeeeccCCch-----------------hhhhccchhheeeeEEecCCCeEeecCCceEEEEe
Confidence 999997 38999999999999987442 34566799999999999999888888889999999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
+. +..+..+.+|.+- +.++.. .+++..++++++|++++
T Consensus 207 ~~---------------------------------------ge~l~~~~ghtn~--vYsis~-~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 207 LD---------------------------------------GEVLLEMHGHTNF--VYSISM-ALSDGLIVSTGEDRTLR 244 (745)
T ss_pred cc---------------------------------------CceeeeeeccceE--EEEEEe-cCCCCeEEEecCCceEE
Confidence 85 4577888899884 788886 77888999999999999
Q ss_pred EEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 369 IWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 369 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
||+.. ++.+.+.-..-.|+++.+-++|. |++|+.||.||||...
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99975 77788875555899999988887 5678889999999766
No 117
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.6e-29 Score=196.56 Aligned_cols=306 Identities=16% Similarity=0.209 Sum_probs=215.7
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee-eeec--cCCCcceeEEEEccCCCCeEEEE-EcCCCc
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK-LSFH--SGHNDNVFQAKIMPFTDDRSIVT-CAADGQ 129 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~--~~~~~~i~~~~~~~~~~~~~l~s-~~~dg~ 129 (458)
+..|++|.+.|++++|+.||++|||++.|+.|+||++++.+.. ++.+ .-.-+..+.+.|+| |-+-++. +-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--CcceEEEEEccCCE
Confidence 3568999999999999999999999999999999999864321 0000 11122467889999 8765554 445567
Q ss_pred EEEeecccccc---eee-------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712 130 VRHAQILERGG---VET-------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (458)
Q Consensus 130 i~vw~~~~~~~---~~~-------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (458)
+++|.+...+. ... ..-..|...+..+-...++ .++++++.|..|.+|+++ |+.++.+...
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtn------- 227 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTN------- 227 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccc-------
Confidence 99998754322 100 0112355667777776666 789999999999999999 7766665432
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
...-+..+.+|+ |+++++++-.-.|++|.+--.+--. .+.......+.+|...|..++|+++.+.+++.
T Consensus 228 ---q~~n~~aavSP~-GRFia~~gFTpDVkVwE~~f~kdG~-------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 228 ---QSSNYDAAVSPD-GRFIAVSGFTPDVKVWEPIFTKDGT-------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred ---cccccceeeCCC-CcEEEEecCCCCceEEEEEeccCcc-------hhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence 223467789998 7999999998999999875433111 11111223456789999999999999999999
Q ss_pred c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCc
Q 012712 280 N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCE 356 (458)
Q Consensus 280 ~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~ 356 (458)
+ ||++++||++-.....+-+ ..++.. .-|.....-..+.. +|+|+
T Consensus 297 SkDG~wriwdtdVrY~~~qDp-------------------------------k~Lk~g~~pl~aag~~p~RL~l-sP~g~ 344 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDP-------------------------------KILKEGSAPLHAAGSEPVRLEL-SPSGD 344 (420)
T ss_pred ecCCcEEEeeccceEecCCCc-------------------------------hHhhcCCcchhhcCCCceEEEe-CCCCc
Confidence 8 6799999987532221110 011111 01111111337777 99999
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 357 YVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
.||... ...+++|..++|+...+++ .|...|.+++|+++|++++|++ |..+++..-.
T Consensus 345 ~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt 402 (420)
T KOG2096|consen 345 SLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT 402 (420)
T ss_pred EEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence 998654 5679999999998877764 5899999999999999999998 6788887633
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-30 Score=221.06 Aligned_cols=240 Identities=18% Similarity=0.201 Sum_probs=196.5
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
|.+++|.||++||.|++|++..-.-.. .-.....++.|.+.|+.+....+++.|+++|.|-+|++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~---------------s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEP---------------STPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCc---------------ccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 556679999999999999987432110 01134568899999999999999999999999999999
Q ss_pred EECCCcc--eeeeeccCCCcceeEEEE-ccCCCCeEEEEEcCCCcEEEeecccccc--------eeeeecc-ccccceEE
Q 012712 88 WDWKTER--VKLSFHSGHNDNVFQAKI-MPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLG-KHQGRAHK 155 (458)
Q Consensus 88 wd~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~-~~~~~v~~ 155 (458)
|+...+. ++..+ ..|..-|.|+++ .+ +..++|+||.|+.|.+||++++.. +....+. ++...|.+
T Consensus 100 W~~~~~~~~c~sti-r~H~DYVkcla~~ak--~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTI-RTHKDYVKCLAYIAK--NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred eecccCcchhHhhh-hcccchheeeeeccc--CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 9998773 44444 789999999999 66 889999999999999999987622 1222233 78899999
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
++.++.+ .++++|+.++.+++||.++.+.+..++. |...|.++..++| |..+++++.||+|++||+..
T Consensus 177 LA~N~t~-t~ivsGgtek~lr~wDprt~~kimkLrG----------HTdNVr~ll~~dD-Gt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 177 LAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMKLRG----------HTDNVRVLLVNDD-GTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred eecCCcc-eEEEecCcccceEEeccccccceeeeec----------cccceEEEEEcCC-CCeEeecCCCceEEeeeccc
Confidence 9999999 8999999999999999999987776653 5557999999998 79999999999999999998
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~ 292 (458)
.+.. .. ..-|...+.++..+|+-..+.+|+ ++.|+.=|+.+.
T Consensus 245 QrCl--------------~T-~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCL--------------AT-YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ccee--------------ee-EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 7633 22 333666799999999999999988 557888888763
No 119
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.8e-29 Score=221.80 Aligned_cols=215 Identities=14% Similarity=0.137 Sum_probs=155.9
Q ss_pred eeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEEECCCcce--------eeeeccCCCcceeEEEEccCCCCeE-EE
Q 012712 53 IYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILWDWKTERV--------KLSFHSGHNDNVFQAKIMPFTDDRS-IV 122 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~-l~ 122 (458)
.+..+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.++.. +.. +.+|...|.+++|+| ++.. |+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~-L~gH~~~V~sVaf~P--~g~~iLa 142 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI-LKGHKKKISIIDWNP--MNYYIMC 142 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE-eecCCCcEEEEEECC--CCCeEEE
Confidence 45678999999999999996 78999999999999999976421 223 368999999999999 8765 57
Q ss_pred EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 123 TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 123 s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
+++.|+.|++||+++++.... +. |...|.+++|+|+| .+|++++.|+.|++||+++++.+..+..+.. ...
T Consensus 143 SgS~DgtIrIWDl~tg~~~~~--i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g-----~~~ 213 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKRAFQ--IN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDG-----GKN 213 (568)
T ss_pred EEeCCCeEEEEECCCCcEEEE--Ee-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccC-----Cce
Confidence 899999999999998876543 33 56789999999999 6889999999999999999987766543211 001
Q ss_pred ecceEEEEECCCCCcEEEEecCCC----eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
...+....|+++ +.++++++.++ .|++||++.... ++. ......+.+.+......++|.++++
T Consensus 214 s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~----~~~ld~~~~~L~p~~D~~tg~l~ls 280 (568)
T PTZ00420 214 TKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTS--------ALV----TMSIDNASAPLIPHYDESTGLIYLI 280 (568)
T ss_pred eEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCC--------ceE----EEEecCCccceEEeeeCCCCCEEEE
Confidence 112333456787 56788777664 799999986421 110 0011112223333334556888888
Q ss_pred ec-CCcEEEEEccCC
Q 012712 279 YN-DEFIYLFTQDMG 292 (458)
Q Consensus 279 ~~-~~~i~i~~~~~~ 292 (458)
|. |+.|++|++..+
T Consensus 281 GkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 281 GKGDGNCRYYQHSLG 295 (568)
T ss_pred EECCCeEEEEEccCC
Confidence 86 558999999764
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-28 Score=192.09 Aligned_cols=269 Identities=19% Similarity=0.161 Sum_probs=207.2
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
......|.++.|+| .++.|+.++.||.+++|++....... .-.|..++.+++|.++. .+++|+.||.|+.+|+
T Consensus 10 npP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~~~l~~---~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 10 NPPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPANSLKL---KFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDL 82 (323)
T ss_pred CCChhceeeEEEcC--cCCcEEEEeccCcEEEEeccchhhhh---heecCCceeeeeccCCc--eEEEeccCceEEEEEe
Confidence 44577899999998 88888888999999999998875443 33488999999999965 5899999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
.++....... |..++.|+.+++. ...+++|+.|++|++||.+....... . ..
T Consensus 83 n~~~~~~igt-----------h~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~~~~~---------------~-d~ 134 (323)
T KOG1036|consen 83 NTGNEDQIGT-----------HDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKVVVGT---------------F-DQ 134 (323)
T ss_pred cCCcceeecc-----------CCCceEEEEeecc-CCeEEEcccCccEEEEeccccccccc---------------c-cc
Confidence 9987665554 6678999999986 67999999999999999997432211 1 11
Q ss_pred ccceeEEEeCCCCcEEEEe-cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSY-NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|.++..+ |..|+.| .+..+.+||+++.....+.. ..
T Consensus 135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~r--------------------------------------eS 174 (323)
T KOG1036|consen 135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRR--------------------------------------ES 174 (323)
T ss_pred CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhc--------------------------------------cc
Confidence 2367666654 4456554 46689999998853322111 11
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----eEEEEeecCC---------ceeeEEEecCCCCeEEEeecC
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----ELIRVIEADR---------HVVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~d 406 (458)
.-...++++++ -|++.=.++++-||+|.+=.++.. +....++.|. -+|++++|+|-...||||+.|
T Consensus 175 ~lkyqtR~v~~-~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 175 SLKYQTRCVAL-VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred cceeEEEEEEE-ecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 11124788988 678877888999999988666554 3345566664 269999999999999999999
Q ss_pred CcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeee
Q 012712 407 SDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 407 ~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~ 445 (458)
|.|.+||+.+.+.+ ++......|.+++|+.||..||.++
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 99999999988776 5555556799999999999998865
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2e-29 Score=206.65 Aligned_cols=288 Identities=14% Similarity=0.225 Sum_probs=223.1
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (458)
..+.|+++.|+| ....|++|+.||.+++|.+..........+.-...+|.+..|.|+|...+++++....++.||+.+
T Consensus 212 s~~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 212 SHGGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCCceEEEecC--CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 346899999999 999999999999999999876544333334445678999999999966899999999999999998
Q ss_pred CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc
Q 012712 183 GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV 262 (458)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (458)
.+..+.-..... ....+.....+|+ +++|+..+..|.|.+....++++..... -.+
T Consensus 290 ak~~k~~~~~g~-------e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~K----------------ieG 345 (514)
T KOG2055|consen 290 AKVTKLKPPYGV-------EEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFK----------------IEG 345 (514)
T ss_pred cccccccCCCCc-------ccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheee----------------ecc
Confidence 876543322111 1224677888998 6899999999999999999887654422 257
Q ss_pred ceeEEEeCCCCcEEEE-ecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 263 GITGLAFSDQSELLVS-YNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 263 ~i~~~~~~~~~~~l~~-~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
.+..++|+.+++.|++ +++|.|++||++.. .++..+.....
T Consensus 346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--------------------------------------~~~~rf~D~G~ 387 (514)
T KOG2055|consen 346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQN--------------------------------------SCLHRFVDDGS 387 (514)
T ss_pred EEeeEEEecCCcEEEEEcCCceEEEEecCCc--------------------------------------ceEEEEeecCc
Confidence 8999999999986554 55789999999873 34444443222
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEEEEEecC------CeEEEEeecCCceeeEEEecCCCCeEEEeec--CCcEEEec
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG------GELIRVIEADRHVVNCIEPHPHSTVLASSGI--ESDIKILT 413 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--d~~i~iw~ 413 (458)
- .-++++. ++++.|||+|+..|-|.|||.++ .+++.++..-...|++|+|+||.++||.+|. ...+|+-.
T Consensus 388 v-~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 388 V-HGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred c-ceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 1 2456776 99999999999999999999654 3566666666678999999999999988765 67899988
Q ss_pred CCccccc-cc---ccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 414 PNAADRA-TL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 414 ~~~~~~~-~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+.+.... .+ ....+.|++++|||.|.+||.|..+|.+.+|+.-
T Consensus 466 vPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 466 VPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8765432 22 2334459999999999999999999999999864
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=197.12 Aligned_cols=277 Identities=16% Similarity=0.245 Sum_probs=219.6
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
..+.+.+++.|.+.+||.+++|+++.+ +.||.+.|+++.|++.+.++++++.|++..||
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~~---------------------Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLAT---------------------YTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred CCcceeecccccceeEEeeccccceee---------------------ecccccceeeEEeccccceEEEccCCcchHHH
Confidence 345788999999999999999998854 88999999999999999999999999999999
Q ss_pred EC------CCc----------------------------------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 89 DW------KTE----------------------------------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 89 d~------~~~----------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
.. ... .++..+ .+|.+.|.+..|.. .++.+++++.|.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~--gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLA--GGQQMVTASWDR 294 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-eccccceEehhhhc--Ccceeeeeeccc
Confidence 72 110 012233 68999999999999 999999999999
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
+..+||+++++.+.. +.+|..+.+.++-+|.. .++++.+.|.+.++||++.. ++..... ++ +...|++
T Consensus 295 TAnlwDVEtge~v~~--LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea--I~sV~VF-----QG--HtdtVTS 362 (481)
T KOG0300|consen 295 TANLWDVETGEVVNI--LTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA--IQSVAVF-----QG--HTDTVTS 362 (481)
T ss_pred cceeeeeccCceecc--ccCcchhccccccCCcc-eEEEEeccCceeEeccchhh--cceeeee-----cc--cccceeE
Confidence 999999999998876 99999999999999998 79999999999999999833 2222221 23 4557999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLF 287 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~ 287 (458)
+.|..+ ..+++|+.|.+|++||+++.+. +...+. ...+++.++.+..+..|+.-.++ .|++|
T Consensus 363 ~vF~~d--d~vVSgSDDrTvKvWdLrNMRs--------------plATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlf 425 (481)
T KOG0300|consen 363 VVFNTD--DRVVSGSDDRTVKVWDLRNMRS--------------PLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLF 425 (481)
T ss_pred EEEecC--CceeecCCCceEEEeeeccccC--------------cceeee-cCCccceeEeecCCceEEeccCCceEEEE
Confidence 999986 5899999999999999998752 111221 35688999999999999998877 69999
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC--cEEEEecCCC
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC--EYVVSGSDCG 365 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~--~~l~~~~~dg 365 (458)
|++...... .+...-++|... |.|++| ..+. .-|++++.|.
T Consensus 426 DlnG~RlaR----------------------------------lPrtsRqgHrRM--V~c~AW-~eehp~cnLftcGFDR 468 (481)
T KOG0300|consen 426 DLNGNRLAR----------------------------------LPRTSRQGHRRM--VTCCAW-LEEHPACNLFTCGFDR 468 (481)
T ss_pred ecCCCcccc----------------------------------CCccccccccee--eeeeec-cccCcccccccccccc
Confidence 998643211 122334567764 888888 4332 3567888999
Q ss_pred eEEEEEecCC
Q 012712 366 RIFIWKKKGG 375 (458)
Q Consensus 366 ~i~iwd~~~~ 375 (458)
.+.-|++...
T Consensus 469 ~v~gW~in~p 478 (481)
T KOG0300|consen 469 MVAGWKINTP 478 (481)
T ss_pred eeeeeEeccc
Confidence 9999998643
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=192.72 Aligned_cols=316 Identities=16% Similarity=0.154 Sum_probs=217.1
Q ss_pred EEEEECCCcceeee----eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee--ccccccceEEEEE
Q 012712 85 VILWDWKTERVKLS----FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL--LGKHQGRAHKLAI 158 (458)
Q Consensus 85 i~iwd~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~--~~~~~~~v~~~~~ 158 (458)
..-|+.+.....+. .+.+|...|++++|+. ||+.|++++.|+.|++|+++.-.....+. ..-.-+..+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence 44565554443322 2479999999999999 99999999999999999997643211110 1111235678999
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCC-cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
.||...+++++-...++++|.+...+.- ..+...+...+. ...+...+..+-... ++.+|++++.|..|.+|+++ +
T Consensus 141 apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-G 218 (420)
T KOG2096|consen 141 APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-G 218 (420)
T ss_pred CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-C
Confidence 9999788888888889999987543220 011111111000 001334555566655 47899999999999999998 5
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
+.++.. ......-...+.+|+|+++++++ .-.+++|.+--.+.-.
T Consensus 219 q~L~~i---------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~------------------- 264 (420)
T KOG2096|consen 219 QLLQSI---------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT------------------- 264 (420)
T ss_pred ceeeee---------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc-------------------
Confidence 543321 12233456678999999999988 4479999864322110
Q ss_pred CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-------CeEEEEe----ecC
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-------GELIRVI----EAD 384 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~----~~~ 384 (458)
...-.....++||... |..++| +++...+++.+.||+++|||++- .+.+++. ...
T Consensus 265 -----------fqev~rvf~LkGH~sa--V~~~aF-sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 265 -----------FQEVKRVFSLKGHQSA--VLAAAF-SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred -----------hhhhhhhheeccchhh--eeeeee-CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc
Confidence 0113345678899986 899998 99999999999999999999742 1222222 222
Q ss_pred CceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc--cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT--LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.+....++.+|.|+.||.+. ...|+++..++++... ...|.+.|.+++|+++|+++++++ |..++++.
T Consensus 331 g~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 33445899999999998654 5689999999886653 345778899999999999999966 45666654
No 124
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=5.7e-29 Score=214.11 Aligned_cols=276 Identities=15% Similarity=0.206 Sum_probs=229.4
Q ss_pred eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE-EEEcCCCCeEEEEecCCCeEEE
Q 012712 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQH 177 (458)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~i 177 (458)
.+.+|...|..+++. ++..+++++.||++++|+-...+......+.+|.+.|.. +++.+..+-.+++|+.|.+|.+
T Consensus 9 ~l~gH~~DVr~v~~~---~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT---DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEec---CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 347999999999987 466899999999999999887777776667778887777 8887644356899999999999
Q ss_pred EeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 178 FDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
|.+.+..+...+.. |...|.+++...+ + .+++|+.|.++++|-..... ...
T Consensus 86 ~~~~~~~P~~~Lkg----------H~snVC~ls~~~~-~-~~iSgSWD~TakvW~~~~l~-----------------~~l 136 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKG----------HKSNVCSLSIGED-G-TLISGSWDSTAKVWRIGELV-----------------YSL 136 (745)
T ss_pred EecCCCCchhhhhc----------cccceeeeecCCc-C-ceEecccccceEEecchhhh-----------------ccc
Confidence 99999988887764 5557888887765 3 49999999999999876542 236
Q ss_pred cccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.+|...|.+++.-|++.++..++|..|++|.-. ...++|.
T Consensus 137 ~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~----------------------------------------~~l~tf~ 176 (745)
T KOG0301|consen 137 QGHTASVWAVASLPENTYVTGSADKTIKLWKGG----------------------------------------TLLKTFS 176 (745)
T ss_pred CCcchheeeeeecCCCcEEeccCcceeeeccCC----------------------------------------chhhhhc
Confidence 678999999999999954444446689999863 4678999
Q ss_pred CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
+|... |+++++ -+++ .+++++.||.|++|++ +|+.+.++.+|+.-|.++...+++..++++++|++++||+..
T Consensus 177 gHtD~--VRgL~v-l~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-- 249 (745)
T KOG0301|consen 177 GHTDC--VRGLAV-LDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-- 249 (745)
T ss_pred cchhh--eeeeEE-ecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--
Confidence 99985 899998 5544 5778899999999999 899999999999999999988889999999999999999987
Q ss_pred cccccccccc-cEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 418 DRATLPTNIE-QVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 418 ~~~~~~~~~~-~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++.+...+.. .|+++.+-++|..+ +|+.||.|+||-
T Consensus 250 e~~q~I~lPttsiWsa~~L~NgDIv-vg~SDG~VrVfT 286 (745)
T KOG0301|consen 250 ECVQVITLPTTSIWSAKVLLNGDIV-VGGSDGRVRVFT 286 (745)
T ss_pred ceEEEEecCccceEEEEEeeCCCEE-EeccCceEEEEE
Confidence 5555555555 69999999999876 889999999995
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.6e-27 Score=202.60 Aligned_cols=372 Identities=11% Similarity=0.148 Sum_probs=244.3
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC-CCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG-HNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
.+.+.--..+|.+|+|+.+.+.||.+-.||.|.||++..+-.......+ ....|.+++|++ +..|++.+.+|.|.-
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITE 94 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEE
Confidence 3444555689999999999999999999999999999886554444344 456799999994 678999999999999
Q ss_pred eecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
||+.+.+.... +....+.|++++.+|.+ ..++.|+.||.+..++...++......... ..+++.+++|+
T Consensus 95 wDl~~lk~~~~--~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~r--------q~sRvLslsw~ 163 (691)
T KOG2048|consen 95 WDLHTLKQKYN--IDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMR--------QKSRVLSLSWN 163 (691)
T ss_pred EecccCceeEE--ecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeeccc--------ccceEEEEEec
Confidence 99999887765 67778899999999999 678999999988888877766543332221 34589999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~ 292 (458)
|+ +..++.|+.||.|++||...+........ ...........-|.++.|..++.++..-+.|.|.+||...+
T Consensus 164 ~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-------~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 164 PT-GTKIAGGSIDGVIRIWDVKSGQTLHIITM-------QLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred CC-ccEEEecccCceEEEEEcCCCceEEEeee-------cccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence 98 68899999999999999998765431100 01112222345688899888775554445789999999987
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccc-cCcee---------ecCccceeeeeEEEEecCCCcEEEEec
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVR-IAPQV---------YKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
........+.... ......+++..+.....+..... ..... ...|.. .+.+++. .++ .+++|+
T Consensus 236 TLiqS~~~h~adV--l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h--dvrs~av-~~~--~l~sgG 308 (691)
T KOG2048|consen 236 TLIQSHSCHDADV--LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH--DVRSMAV-IEN--ALISGG 308 (691)
T ss_pred chhhhhhhhhcce--eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc--cceeeee-ecc--eEEecc
Confidence 7655543322221 12222333333333222221111 00000 012222 3677776 333 777777
Q ss_pred CCCeEEEEEecCC-----------------------eEE----------------------------EEeecCCceeeEE
Q 012712 363 DCGRIFIWKKKGG-----------------------ELI----------------------------RVIEADRHVVNCI 391 (458)
Q Consensus 363 ~dg~i~iwd~~~~-----------------------~~~----------------------------~~~~~~~~~v~~~ 391 (458)
.|..+.+-..... .++ +........|.+.
T Consensus 309 ~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~ 388 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCA 388 (691)
T ss_pred eeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeee
Confidence 7776665543210 000 0000112348889
Q ss_pred EecCCCCeEEEeecCCcEEEecC------------------------------------------------Ccccccc--
Q 012712 392 EPHPHSTVLASSGIESDIKILTP------------------------------------------------NAADRAT-- 421 (458)
Q Consensus 392 ~~s~~~~~l~s~~~d~~i~iw~~------------------------------------------------~~~~~~~-- 421 (458)
+.||+|++|+.+.- ..++||.+ ++.....
T Consensus 389 aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~ 467 (691)
T KOG2048|consen 389 AISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELK 467 (691)
T ss_pred ccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhh
Confidence 99999999987751 12222222 1111111
Q ss_pred ---cccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 422 ---LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 422 ---~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.......|+.+.-||||+|+|..+.+|.|.+|+.
T Consensus 468 ~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl 504 (691)
T KOG2048|consen 468 SIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNL 504 (691)
T ss_pred ccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEc
Confidence 1122345899999999999999999999999985
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=2e-27 Score=206.00 Aligned_cols=292 Identities=12% Similarity=0.123 Sum_probs=204.8
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWD 89 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd 89 (458)
.++++++.|+.|++||..+++.+. .+.+|. .+.+++|+|+++.+ ++++.++.|++||
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~---------------------~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d 59 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTR---------------------TFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVID 59 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEE---------------------EEECCC-CCCceEECCCCCEEEEEECCCCeEEEEE
Confidence 568899999999999999887653 355454 36789999999876 5677889999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE-cCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEE
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYT 168 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 168 (458)
..+++....+ ..+. .+..++|+| +++.++++ +.++.+++||+.+.+.+.. +. +...+.+++|+|++ .++++
T Consensus 60 ~~~~~~~~~~-~~~~-~~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~--~~-~~~~~~~~~~~~dg-~~l~~ 131 (300)
T TIGR03866 60 LATGEVIGTL-PSGP-DPELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAE--IP-VGVEPEGMAVSPDG-KIVVN 131 (300)
T ss_pred CCCCcEEEec-cCCC-CccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeE--ee-CCCCcceEEECCCC-CEEEE
Confidence 9988876665 3333 356789999 88877654 5689999999987665443 22 22346789999999 56676
Q ss_pred ecCCC-eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE-EEecCCCeEEEEecCCCccCCCccCCC
Q 012712 169 CGEDG-LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF-AVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (458)
Q Consensus 169 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (458)
+..++ .+.+||.++++....... ...+.+++|+|+ +.++ +++..++.|++||+++.+......+..
T Consensus 132 ~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 132 TSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence 66654 577889887765443321 123567899998 4555 555579999999999876433321110
Q ss_pred CCCCcCCCccccccccceeEEEeCCCCcEEEEe--cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSY--NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
+ ... ........++|+|++++++.+ .++.+.+||..+.+
T Consensus 200 ~-------~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~------------------------------- 240 (300)
T TIGR03866 200 P-------GVH-PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE------------------------------- 240 (300)
T ss_pred c-------ccc-cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc-------------------------------
Confidence 0 000 011234568899999975443 35579999987631
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeecCCceeeEEEecC
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHP 395 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 395 (458)
....+... . .+.+++| +|+|++|+++ ..+|.|++||+.+++++.+++.. ...+.++++|
T Consensus 241 -------~~~~~~~~-~--~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 241 -------VLDYLLVG-Q--RVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred -------EEEEEEeC-C--CcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 22222111 1 2678888 9999999876 46899999999999999999864 5568888875
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=2.4e-28 Score=189.19 Aligned_cols=308 Identities=16% Similarity=0.218 Sum_probs=227.1
Q ss_pred eecCCCceEEEEEec-CCCEEEEecCCCeEEEEECCCcce----------ee----eeccCCCcceeEEEEccCCCCeEE
Q 012712 57 LDKHRGCVNTVSFNT-DGDILISGSDDRRVILWDWKTERV----------KL----SFHSGHNDNVFQAKIMPFTDDRSI 121 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~----------~~----~~~~~~~~~i~~~~~~~~~~~~~l 121 (458)
...|.+.|+++...+ .|+++++|+.||.|.+||+++-.. +. .-..+|.-.|..+.|-|+ |...+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence 457999999999988 689999999999999999975431 11 112568889999999996 77788
Q ss_pred EEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC--CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712 122 VTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS--PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (458)
Q Consensus 122 ~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (458)
.+++.|.++++||..+.+.... ++ ..+.|.+-+++|-. ..++++|..+-.|++-|+..|.....+..
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~--F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-------- 186 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVD--FK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-------- 186 (397)
T ss_pred ecccccceEEEeecccceeeEE--ee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--------
Confidence 9999999999999988776654 22 44678888888843 35788888899999999999998777764
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
|...|.++.|+|.....|++|+.||.|++||++.-. ....+...... ..+.......|.+.+.+++|..++.++++
T Consensus 187 --Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k-~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 --HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTK-RPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred --ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCc-cCccccccccccceeeeeeecccchhhhh
Confidence 455799999999987889999999999999998651 11111100000 00112234567899999999999999988
Q ss_pred ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712 279 YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 279 ~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 357 (458)
.+ ++.+++|+...+....... .+....-..+... .+.+ -+...
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~------------------------------g~~~~n~~~~~~~-~~~~-----~~s~v 307 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREF------------------------------GPIIHNQTTSFAV-HIQS-----MDSDV 307 (397)
T ss_pred ccCccceEEeecccCccccccc------------------------------ccccccccccceE-EEee-----cccce
Confidence 77 7799999998865432211 1111111111110 1221 12223
Q ss_pred EEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 358 VVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 358 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
++---.++.+.++++-+++.++.+..|-..|.+.++-|+-+...+++.|+.|..|.+.
T Consensus 308 fv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 308 FVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence 3333345899999999999999999998899999999999999999999999999874
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=1.3e-27 Score=207.16 Aligned_cols=294 Identities=12% Similarity=0.125 Sum_probs=206.7
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEE-EEEcCCCcEEEeecccccceeeeecccccc
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSI-VTCAADGQVRHAQILERGGVETKLLGKHQG 151 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 151 (458)
+..+++++.|+.|++||+.+++.+..+ ..+ ..+.+++|+| +++.+ ++++.++.|++||..+++.... +..+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~- 73 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSK--DGKLLYVCASDSDTIQVIDLATGEVIGT--LPSGP- 73 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECC--CCCEEEEEECCCCeEEEEECCCCcEEEe--ccCCC-
Confidence 357889999999999999998887776 344 3467899999 98876 5677889999999988765543 33333
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-eEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRL 230 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i 230 (458)
.+..++|+|++..++++++.++.+++||+++.+.+..+.. ...+.+++|+|+ +.+++++..++ .+.+
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~d-g~~l~~~~~~~~~~~~ 141 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPD-GKIVVNTSETTNMAHF 141 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCC-CCEEEEEecCCCeEEE
Confidence 3567899999965556667789999999998766554431 123578999998 67888777664 4677
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
||.++.+.... .. ....+..++|+|++++|+.++ ++.+++||+.+++....+...
T Consensus 142 ~d~~~~~~~~~--------------~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~------- 198 (300)
T TIGR03866 142 IDTKTYEIVDN--------------VL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE------- 198 (300)
T ss_pred EeCCCCeEEEE--------------EE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-------
Confidence 89876543211 11 122456789999999875543 568999999875322211100
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-ecCCCeEEEEEecCCeEEEEeecCCce
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-GSDCGRIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
....+........++| +|++++++. .+.++.+.+||+.+++.+..+. +...
T Consensus 199 --------------------------~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~ 250 (300)
T TIGR03866 199 --------------------------IPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQR 250 (300)
T ss_pred --------------------------ccccccccCCccceEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCC
Confidence 0000001111345677 999998654 3456789999999888776654 3457
Q ss_pred eeEEEecCCCCeEEEe-ecCCcEEEecCCcccccccccccccEEEEEEec
Q 012712 388 VNCIEPHPHSTVLASS-GIESDIKILTPNAADRATLPTNIEQVCFSIYSA 436 (458)
Q Consensus 388 v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~ 436 (458)
+.+++|+|+|++|+++ +.++.|++||+.+++...........+.++++|
T Consensus 251 ~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 251 VWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred cceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 8999999999999876 568999999999998764444456668888775
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-29 Score=208.36 Aligned_cols=274 Identities=18% Similarity=0.283 Sum_probs=217.5
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee--cCCCceEEEEEecCCCEEEEecCC
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD--KHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
..|+..+++.||+ .|.|+|||+..- .-+. .+..|. .-.+.|+++.+.|||+.|++|+.-
T Consensus 426 tIS~~trhVyTgG-kgcVKVWdis~p-g~k~-----------------PvsqLdcl~rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 426 TISNPTRHVYTGG-KGCVKVWDISQP-GNKS-----------------PVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred EecCCcceeEecC-CCeEEEeeccCC-CCCC-----------------ccccccccCcccceeeeEecCCCceEEecccc
Confidence 4677888999999 788999999832 1100 111122 245789999999999999999999
Q ss_pred CeEEEEECCCcceeeee-ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 83 RRVILWDWKTERVKLSF-HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
.++.|||+......... +....-..++++.+| |.+..+++..||.|.|||+.+...+.. +++|++.+.||.++++
T Consensus 487 stlsiWDLAapTprikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhnq~~Vrq--fqGhtDGascIdis~d 562 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHNQTLVRQ--FQGHTDGASCIDISKD 562 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEcccceeeec--ccCCCCCceeEEecCC
Confidence 99999999876543222 133345678899999 999999999999999999988776655 9999999999999999
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
| ..|.+|+-|.+|+-||++++..++... ....|.++..+|. +.++++|-+++.+.+......+
T Consensus 563 G-tklWTGGlDntvRcWDlregrqlqqhd-----------F~SQIfSLg~cP~-~dWlavGMens~vevlh~skp~---- 625 (705)
T KOG0639|consen 563 G-TKLWTGGLDNTVRCWDLREGRQLQQHD-----------FSSQIFSLGYCPT-GDWLAVGMENSNVEVLHTSKPE---- 625 (705)
T ss_pred C-ceeecCCCccceeehhhhhhhhhhhhh-----------hhhhheecccCCC-ccceeeecccCcEEEEecCCcc----
Confidence 9 679999999999999999998766554 4557999999998 7899999999999998876543
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
+.....|+.-|.++.|.+.|+++++.+ |+-+..|...-+..
T Consensus 626 ------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGas-------------------------- 667 (705)
T KOG0639|consen 626 ------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-------------------------- 667 (705)
T ss_pred ------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccc--------------------------
Confidence 334455788999999999999999888 44688998766422
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
+...+ +.. .|.++.. |.|.+|+++|+.|....+|.+
T Consensus 668 ------------iFqsk--E~S-sVlsCDI-S~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 ------------IFQSK--ESS-SVLSCDI-SFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ------------eeecc--ccC-cceeeee-ccCceEEEecCCCcceEEEEE
Confidence 22222 221 4888888 999999999999988888875
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=199.80 Aligned_cols=290 Identities=11% Similarity=0.168 Sum_probs=228.1
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeeccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILE 137 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~ 137 (458)
.++|+++.|+|....|++|+.|++++||.++... .+..+ .--..+|.+.+|.| +|. .+++++....+..||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecC--CCceEEEecccceEEEEeeccc
Confidence 4789999999999999999999999999986432 33333 33467899999999 888 899999999999999988
Q ss_pred ccceeeeeccccc-cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 138 RGGVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 138 ~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
.+......+.++. ..+.....+|++ ++++..+..|.|.+....+++.+..++ ..+.+..++|+.+ +
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K-----------ieG~v~~~~fsSd-s 356 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK-----------IEGVVSDFTFSSD-S 356 (514)
T ss_pred cccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-----------eccEEeeEEEecC-C
Confidence 8765544455554 456778899999 688999999999999999999988887 4557999999987 6
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~ 295 (458)
..|++++.+|.|++||++.... .........-.-++++.++++.+||+|++. -|.|||.++....
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~--------------~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSC--------------LHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred cEEEEEcCCceEEEEecCCcce--------------EEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 8888888899999999998753 233333333345678888999999999965 6899997663221
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC--CCeEEEEEec
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD--CGRIFIWKKK 373 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~--dg~i~iwd~~ 373 (458)
.. .+++..+..-.. .|.++.| +||.+.||.++. +..+++-.+.
T Consensus 423 ~~--------------------------------PkPik~~dNLtt--~Itsl~F-n~d~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 423 TN--------------------------------PKPIKTVDNLTT--AITSLQF-NHDAQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred CC--------------------------------CCchhhhhhhhe--eeeeeee-CcchhhhhhhhhccccceEEEecc
Confidence 11 234444444444 3899998 999999998775 4689999988
Q ss_pred CCeEEEEeecCC---ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 374 GGELIRVIEADR---HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 374 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+......+.... +.|+||+|||.+.+||.|..+|.+.+|.+.
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 877666664432 458999999999999999999999999863
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-28 Score=202.37 Aligned_cols=263 Identities=17% Similarity=0.202 Sum_probs=197.2
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeE
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRV 85 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i 85 (458)
|.+...+|+++..+.|.|||..+-.-... .....++..+|.||++.=.+|+|++.. -.|++++.|++|
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-----------~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPK-----------ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCccc-----------ccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 34456688889999999999985332211 000234445789999988899999854 578999999999
Q ss_pred EEEECCCcce------eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 86 ILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 86 ~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
++||+..... ......+|...|..++|+|. +..++++++.|+.+.|||++++.........+|+++++|++|+
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999965432 23334899999999999995 7788999999999999999964434445578899999999999
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
|-+..+||+|+.|++|.+||+|...... ....+ +...|.++.|+|.....|++++.|+.+.+||+..-...
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~l-------h~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPL-------HTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCc-------eeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 9988999999999999999999876411 11122 55689999999998899999999999999999765433
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE-EEecCC-cEEEEEccC
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL-VSYNDE-FIYLFTQDM 291 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~-~i~i~~~~~ 291 (458)
+...... .....+.....+|...|..+.|+|+..++ ++.+++ .+.||++..
T Consensus 353 q~~eda~-dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAE-DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhc-cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2100000 00001123457889999999999998755 455554 699999874
No 132
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=208.23 Aligned_cols=307 Identities=21% Similarity=0.269 Sum_probs=216.9
Q ss_pred EEEEec---CCCEEEEecCCCeEEEEECCCccee-----eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712 66 TVSFNT---DGDILISGSDDRRVILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (458)
Q Consensus 66 ~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 137 (458)
+..|++ ....||.+..||.|.++|....... ......|.+.|..+.|.| ....|++++.|.++++||+.+
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeecc
Confidence 366765 3468999999999999998654322 223368999999999999 889999999999999999999
Q ss_pred ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ce-----eeecc----------cCCCCcc
Q 012712 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--EL-----FTCRP----------IDDRRNY 200 (458)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~-----~~~~~----------~~~~~~~ 200 (458)
.+......+.+|...+.+++|.|.++..|++|+.||.|.|||++....- .. ...+. .......
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 8887766688999999999999999999999999999999999754310 00 00000 0000111
Q ss_pred ee----ecceEEEEECCCCCcEEEEecC-CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE
Q 012712 201 MT----VVNLNAIAIDPRNANLFAVAGS-DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL 275 (458)
Q Consensus 201 ~~----~~~v~~~~~~p~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (458)
.. ...|+.+.| .| ...|++++. |+.|++||++........+- ....... ........+.++.....|.+
T Consensus 212 A~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep---~~~~~~~-t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEP---RGSDKYP-THSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred cccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCC---CcccCcc-CcccceeeeEEEEecCCCCe
Confidence 12 223445555 44 478888877 99999999998764433211 1000000 00112345777877777765
Q ss_pred -EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712 276 -LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (458)
Q Consensus 276 -l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (458)
+|++.|+.|+.|++..-. ..+...+.++.....-..-. .+||
T Consensus 286 L~AsCtD~sIy~ynm~s~s------------------------------------~sP~~~~sg~~~~sf~vks~-lSpd 328 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLS------------------------------------ISPVAEFSGKLNSSFYVKSE-LSPD 328 (720)
T ss_pred EEEEecCCcEEEEeccccC------------------------------------cCchhhccCcccceeeeeee-cCCC
Confidence 566668899999998632 22334444444432222222 4999
Q ss_pred CcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCCC-CeEEEeecCCcEEEecCCcc
Q 012712 355 CEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHS-TVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 355 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~i~iw~~~~~ 417 (458)
+.+|++|+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-++++++|.+++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999999999999999998764 456678999999999998743 34677799999999999764
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=189.79 Aligned_cols=295 Identities=16% Similarity=0.188 Sum_probs=217.5
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
-.|+.|++.|.+||+|..||.|.|||+.+...- ..+.+|..+|.+++||+ ||+.|+|++.|..|.+||+..+..+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia-r~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA-RMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh-hhhhccccceeEEEecC--CCCEeeeecCCceeEEEeccCCCceeE
Confidence 779999999999999999999999999998864 44489999999999999 999999999999999999999987765
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.. ...+|+.+.|+|...+.+++.-.+..-.+.++..+... .+....... ......+..|.+. |+++++|.
T Consensus 103 ir---f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~d-----ln~sas~~~fdr~-g~yIitGt 172 (405)
T KOG1273|consen 103 IR---FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGD-----LNSSASHGVFDRR-GKYIITGT 172 (405)
T ss_pred EE---ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccc-----cccccccccccCC-CCEEEEec
Confidence 33 56899999999987666666655555555555543211 111100000 1112234468886 79999999
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~ 302 (458)
..|.+.++|..+.+...... ......|..+.++..|++|+..+.+ .|+.|++..-.....
T Consensus 173 sKGkllv~~a~t~e~vas~r--------------its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r----- 233 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFR--------------ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGR----- 233 (405)
T ss_pred CcceEEEEecchheeeeeee--------------echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCc-----
Confidence 99999999999987544311 1113578899999999999988755 699999874211100
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-CeEEEEEecCCeEEEEe
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-GRIFIWKKKGGELIRVI 381 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 381 (458)
.....+.++++.-.+...-.+++| |.+|.|++.++.. ..++||....|.+++.+
T Consensus 234 ------------------------~~e~e~~~K~qDvVNk~~Wk~ccf-s~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 234 ------------------------DGEVEPEHKLQDVVNKLQWKKCCF-SGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred ------------------------cCCcChhHHHHHHHhhhhhhheee-cCCccEEEeccccceeEEEEecCCcceeeee
Confidence 000112233333223223456777 9999999887744 68999999999999999
Q ss_pred ecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 382 ~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
.|.. .....+.|+|-...+++- ..|.++||....
T Consensus 289 hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 289 HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 9877 567899999999988887 689999997653
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-28 Score=200.90 Aligned_cols=260 Identities=18% Similarity=0.266 Sum_probs=205.8
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc---
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE--- 137 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~--- 137 (458)
.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+ .+|-..|+++.|+- |+.+|+||+.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeecc
Confidence 578999999999999999889999999999999997777 89999999999999 999999999999999998743
Q ss_pred ----ccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 138 ----RGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 138 ----~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
....+...+..|+-+|+++...+.+ ...+++++.|.++++||+..+..+..+. ....+.+++.+
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-----------fp~si~av~lD 226 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-----------FPSSIKAVALD 226 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-----------cCCcceeEEEc
Confidence 2233445588999999999998764 3579999999999999999998887776 44478999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~ 292 (458)
|. +..+++|+.+|.|.+.++..... ....+..=.++++
T Consensus 227 pa-e~~~yiGt~~G~I~~~~~~~~~~---------------------~~~~v~~k~~~~~-------------------- 264 (476)
T KOG0646|consen 227 PA-ERVVYIGTEEGKIFQNLLFKLSG---------------------QSAGVNQKGRHEE-------------------- 264 (476)
T ss_pred cc-ccEEEecCCcceEEeeehhcCCc---------------------ccccccccccccc--------------------
Confidence 97 78999999999999988865320 0111111111111
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
......+.+|.+...|+|++. +.||..|++|+.||.+.|||+
T Consensus 265 -------------------------------------~t~~~~~~Gh~~~~~ITcLai-s~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 265 -------------------------------------NTQINVLVGHENESAITCLAI-STDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -------------------------------------cceeeeeccccCCcceeEEEE-ecCccEEEeeCCCCCEEEEec
Confidence 234556777877556999998 999999999999999999999
Q ss_pred cCCeEEEEeecCCceeeEEEecCCCCeEEEe-ecCCcEEEecC
Q 012712 373 KGGELIRVIEADRHVVNCIEPHPHSTVLASS-GIESDIKILTP 414 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~ 414 (458)
.+.++++++....++|+.+.+.|-.+-...+ .....+-.|++
T Consensus 307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 307 YSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred chHHHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999988777899999997754433332 22233444444
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.3e-27 Score=210.82 Aligned_cols=286 Identities=13% Similarity=0.195 Sum_probs=222.0
Q ss_pred ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
.+|+..-+.++|.|+|.+|++++.||.|++|+.... +....+ ..+...|.+++- .+.+|++++.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~----~s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIAC----YSNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEee----cccceEEeeccceEEEeeCC
Confidence 479999999999999999999999999999998766 333333 337788888877 56699999999999999998
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
+++.-.. +...+-++++++++-+| .+++.|+.|-.|++.++........+.. +..+|.++.|+|. +
T Consensus 85 s~~~~~i--L~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrg----------h~apVl~l~~~p~-~ 150 (933)
T KOG1274|consen 85 SGEEDTI--LARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRG----------HDAPVLQLSYDPK-G 150 (933)
T ss_pred CCCccce--eeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecc----------cCCceeeeeEcCC-C
Confidence 8765433 56677899999999999 7899999999999999998887777654 5668999999997 7
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
++||+.+.||.|++||+.++.....+..-.+.. .......+..++|+|+ |++++.+.++.|++|+....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n-------~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w--- 220 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDN-------EFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW--- 220 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccc-------cccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc---
Confidence 999999999999999999887654432211111 1111456788999999 56777777999999998874
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
.....+........+..+.| +|+|+|||+++.||.|.|||.++.
T Consensus 221 -----------------------------------e~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 221 -----------------------------------ELQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred -----------------------------------eeheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEecccc
Confidence 33444444443334778888 999999999999999999999873
Q ss_pred eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
+. ......|.+++|.|+..-+-.-...|...+|
T Consensus 265 ~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 265 ER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 22 2234579999999998866544444444444
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.8e-28 Score=204.54 Aligned_cols=315 Identities=14% Similarity=0.173 Sum_probs=233.8
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
.+...+.||++.|++|+..|.|.+||+|+.||+|+||.+.++.++..+ ...+.|.+++|+|..+-..||++-... +.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ 467 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGEC-VL 467 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEEecCc-eE
Confidence 345567899999999999999999999999999999999999999887 356799999999954555566665544 55
Q ss_pred EeecccccceeeeeccccccceEEEEEcCCCCeEEEEe----cCCCeEEEEeCCCCCcc-----ceeeecccCCCCccee
Q 012712 132 HAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC----GEDGLVQHFDLRTGAAT-----ELFTCRPIDDRRNYMT 202 (458)
Q Consensus 132 vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~ 202 (458)
+-+..-+..+.. + +.. .+|+++ ..++.+..|.-...... ..+. +
T Consensus 468 ivnp~~G~~~e~----~-----------~t~-ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~-----------~ 520 (733)
T KOG0650|consen 468 IVNPIFGDRLEV----G-----------PTK-ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK-----------H 520 (733)
T ss_pred EeCccccchhhh----c-----------chh-hhhhcCCCccCCcccceeechhhhhhhccceEEEEe-----------c
Confidence 555433322111 0 000 111211 12445667754322111 1122 4
Q ss_pred ecceEEEEECCCCCcEEEEecCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
...|..+.|+.. |.+|++...+ ..|.|+++...+.. ..+....+.+.++.|+|...+|+.+
T Consensus 521 ~k~i~~vtWHrk-GDYlatV~~~~~~~~VliHQLSK~~sQ---------------~PF~kskG~vq~v~FHPs~p~lfVa 584 (733)
T KOG0650|consen 521 PKSIRQVTWHRK-GDYLATVMPDSGNKSVLIHQLSKRKSQ---------------SPFRKSKGLVQRVKFHPSKPYLFVA 584 (733)
T ss_pred CCccceeeeecC-CceEEEeccCCCcceEEEEeccccccc---------------CchhhcCCceeEEEecCCCceEEEE
Confidence 557999999998 7888886543 46889988766421 2223346789999999999999999
Q ss_pred cCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712 280 NDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 280 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
+...|++||+.. ...++.+..... .|..++. +|.|.-|+
T Consensus 585 Tq~~vRiYdL~k--------------------------------------qelvKkL~tg~k--wiS~msi-hp~GDnli 623 (733)
T KOG0650|consen 585 TQRSVRIYDLSK--------------------------------------QELVKKLLTGSK--WISSMSI-HPNGDNLI 623 (733)
T ss_pred eccceEEEehhH--------------------------------------HHHHHHHhcCCe--eeeeeee-cCCCCeEE
Confidence 999999999876 233444443333 4788888 99999999
Q ss_pred EecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC-------ccc---cccccccccc
Q 012712 360 SGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN-------AAD---RATLPTNIEQ 428 (458)
Q Consensus 360 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~-------~~~---~~~~~~~~~~ 428 (458)
.|+.|+.+..||+.-. ++.++++-|...+++++|++.-.++++|+.||++.|+.-. +.. +..+.+|...
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 9999999999999744 6778899999999999999999999999999999998532 111 2245666655
Q ss_pred ----EEEEEEecCCcEEEeeecCCceEEE
Q 012712 429 ----VCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 429 ----v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
|..+.|+|.-.||++++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 8999999999999999999999998
No 137
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=4.1e-27 Score=201.11 Aligned_cols=113 Identities=19% Similarity=0.275 Sum_probs=99.7
Q ss_pred ceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCC-------eEEEEeecCCceeeEEEecCC-CCeEEEeecCCcEEE
Q 012712 341 NCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGG-------ELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKI 411 (458)
Q Consensus 341 ~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i 411 (458)
+...|+.+.| +| |.+.||.+++||.|++|.+..+ ++...+.+|...|+++.|+|- ...|++++.|.+|++
T Consensus 626 Ngt~vtDl~W-dPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 626 NGTLVTDLHW-DPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred cCceeeeccc-CCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence 3335899998 66 6789999999999999998654 455778899999999999995 468999999999999
Q ss_pred ecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 412 LTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 412 w~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
||+.+.... .+.+|.+.|..++|||||+.+|+.+.||+|++|+
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 999988654 8999999999999999999999999999999986
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=206.38 Aligned_cols=284 Identities=13% Similarity=0.192 Sum_probs=220.1
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
..|....+.++|.| +|+.|++++.||.|++|+..... .... +.-+...|.+++... ..|++++.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~e~P~t--i~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDEEEPET--IDISGELVSSIACYS---NHFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcccCCch--hhccCceeEEEeecc---cceEEeeccceEEEee
Confidence 37889999999999 99999999999999999987763 3332 333777888887765 3689999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
+..++.-..+.. ...++.+++++.+ |++++.|+.|-.|++.++..... .....+
T Consensus 83 fps~~~~~iL~R----------ftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~---------------~~~lrg 136 (933)
T KOG1274|consen 83 FPSGEEDTILAR----------FTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQ---------------EKVLRG 136 (933)
T ss_pred CCCCCccceeee----------eeccceEEEEecC-CcEEEeecCceeEEEEeccccch---------------heeecc
Confidence 988876544432 3347899999997 79999999999999999887642 455677
Q ss_pred cccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 260 EQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
|.++|.++.|+|++.+||+.+ +|.+++|++.++.....+.. +..-..
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~--------------------------------v~k~n~ 184 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTG--------------------------------VDKDNE 184 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhccc--------------------------------CCcccc
Confidence 899999999999999999887 78999999998654443321 000011
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
......+..++| +|+|..++....|+.|.+|+...++....++. +...+..++|+|+|+|||+++.||.|.|||.++
T Consensus 185 ~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 185 FILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 111113677888 99988888888899999999999999888864 444599999999999999999999999999998
Q ss_pred ccccccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 417 ADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 417 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
.+. ......|++++|-|+..-+-.-..-|..-+|
T Consensus 264 ~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 264 HER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred chh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 433 3334569999999998655433344443333
No 139
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.6e-28 Score=209.18 Aligned_cols=290 Identities=16% Similarity=0.225 Sum_probs=220.3
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
....+|+..++-..++.++. ..++||.+..... ...+. ..-.-.+..+.|... +.++|||++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~-~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL-YSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc-hhhhheeecCCCcEEEEec
Confidence 45667777888888888876 4688887754322 11110 011124556788853 7889999999999999999
Q ss_pred ccc-cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC
Q 012712 136 LER-GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
... +......+..|...++++.|++..+++|++|+.||.|++||++..+....+.. ....|..+.|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----------nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----------NSESIRDVKFSPG 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----------cchhhhceeeccC
Confidence 762 12222348899999999999999999999999999999999999888777764 3447999999998
Q ss_pred CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCC
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGL 293 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~ 293 (458)
.++.|+++...|.+++||+|.... ....+..|.++|.++.|+|++.+||+|+.| .|+||++.+.+
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r--------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDR--------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred CCceEEEecCCceEEEeeccCchh--------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 889999999999999999998652 234566789999999999999999999955 79999998642
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE-EEEec--CCCeEEEE
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY-VVSGS--DCGRIFIW 370 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~-l~~~~--~dg~i~iw 370 (458)
.. ....+ +... .+.++.| -|...+ ||+++ .|-.|+||
T Consensus 254 ~~------------------------------------~~~tI--nTia-pv~rVkW-RP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 254 AK------------------------------------PKHTI--NTIA-PVGRVKW-RPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred cc------------------------------------ceeEE--eecc-eeeeeee-ccCccchhhhhhccccceEEEE
Confidence 21 11111 1111 4889998 887765 45443 46799999
Q ss_pred EecCC-eEEEEeecCCceeeEEEecC-CCCeEEEeecCCcEEEecCCcc
Q 012712 371 KKKGG-ELIRVIEADRHVVNCIEPHP-HSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 371 d~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
|+... -+..++..|...++.++|.. |...|.+++.||+|..-.+++.
T Consensus 294 DvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 294 DVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99643 45678889999999999965 4567889999999877666544
No 140
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.9e-27 Score=191.92 Aligned_cols=296 Identities=15% Similarity=0.175 Sum_probs=220.9
Q ss_pred EecCC-CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEE
Q 012712 78 SGSDD-RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHK 155 (458)
Q Consensus 78 s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~ 155 (458)
+++.| .++.+||+++|....++..+....-.++..- .+.+++++.. ...+.+|.+........ ..--.+++.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l---~~~yllsaq~~rp~l~vw~i~k~~~~~q--~~v~Pg~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL---NNEYLLSAQLKRPLLHVWEILKKDQVVQ--YIVLPGPVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh---chhheeeecccCccccccccCchhhhhh--hcccccceee
Confidence 34444 4599999999999888833212222222222 4456666554 45789999876554432 2234578999
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
++-+|.| ++|+.|+..|.|++|.+.+|..+..+.. |-..|+|+.|+.| +.+|++|+.||.|.+|++..
T Consensus 87 l~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~d-gs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 87 LASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDD-GSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred eecCCCc-eEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCC-CcEEEecCCCccEEEEEEEe
Confidence 9999999 7888888999999999999999887753 3447999999997 78999999999999999865
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCC-cEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
.-.... -....+...+.+|.-+|+.+...+.| ..|++.+.| ++++||+..+.
T Consensus 155 lv~a~~------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------------------- 209 (476)
T KOG0646|consen 155 LVSADN------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------------------- 209 (476)
T ss_pred eccccc------CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-------------------
Confidence 321111 00224566778899999999888764 477777755 89999998753
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC----------------e
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG----------------E 376 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----------------~ 376 (458)
.+..+.- +..+.+++. +|-++.+++|+.+|.|.+.++... .
T Consensus 210 -------------------LLlti~f---p~si~av~l-Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 210 -------------------LLLTITF---PSSIKAVAL-DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred -------------------eeEEEec---CCcceeEEE-cccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 2222222 224888998 999999999999999999887432 3
Q ss_pred EEEEeecCCc--eeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc-ccccEEEEEEecCC
Q 012712 377 LIRVIEADRH--VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT-NIEQVCFSIYSADY 438 (458)
Q Consensus 377 ~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~-~~~~v~~~~~s~d~ 438 (458)
.+..+.+|.+ .|++++.+-||.+|++|+.||.+.|||+.+.++++... ..++|+.+.+.|=.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE 331 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence 4456778988 99999999999999999999999999999998886555 67789988885543
No 141
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.96 E-value=4.8e-26 Score=195.76 Aligned_cols=273 Identities=18% Similarity=0.226 Sum_probs=206.5
Q ss_pred CCCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 1 MDDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 1 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
|.+++|-|||..|+.+. +..+.|||.+.|.++ +++++|++.|.|++|+.||+.+|+|+
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG~ll---------------------qtLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDGTLL---------------------QPLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCcccc---------------------cccccccceEEEEEEccCCceeccCC
Confidence 56889999999988888 456889999999877 45999999999999999999999999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.|..|.+|.-+- +-+..+ .|...|.|+.|.| -...|++++-+ ..-+|....... .. ......+.+++|..
T Consensus 73 aDK~VI~W~~kl-EG~LkY--SH~D~IQCMsFNP--~~h~LasCsLs-dFglWS~~qK~V-~K---~kss~R~~~CsWtn 142 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL-EGILKY--SHNDAIQCMSFNP--ITHQLASCSLS-DFGLWSPEQKSV-SK---HKSSSRIICCSWTN 142 (1081)
T ss_pred CceeEEEecccc-cceeee--ccCCeeeEeecCc--hHHHhhhcchh-hccccChhhhhH-Hh---hhhheeEEEeeecC
Confidence 999999998543 333444 7999999999999 88899999873 567898654332 21 12345788999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC----cEEEEecCCCeEEEEecCCC
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~~~~~dg~i~i~d~~~~ 236 (458)
|| ++|+.|-.+|+|.+-+-. ++....+..+.. ...+|.+++|+|..+ ..+++.....++.+|.+...
T Consensus 143 DG-qylalG~~nGTIsiRNk~-gEek~~I~Rpgg-------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~ 213 (1081)
T KOG1538|consen 143 DG-QYLALGMFNGTISIRNKN-GEEKVKIERPGG-------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK 213 (1081)
T ss_pred CC-cEEEEeccCceEEeecCC-CCcceEEeCCCC-------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce
Confidence 99 789999999999998643 333333332111 456899999999632 57888888888888888654
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
...+. ..-.-...|+.+.++|+++..|+ ++.+.+|.-+.
T Consensus 214 ~Igk~----------------r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G------------------------ 253 (1081)
T KOG1538|consen 214 QIGKD----------------RALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG------------------------ 253 (1081)
T ss_pred eeccc----------------ccCCCCchhheeccCCcEEEEccCCCceEEEeecC------------------------
Confidence 32211 01123457899999999888776 55788886542
Q ss_pred CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
....++..... +|..++. .|++++++.|+.||+|..|++
T Consensus 254 ---------------vrLGTvg~~D~--WIWtV~~-~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 254 ---------------VRLGTVGEQDS--WIWTVQA-KPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ---------------eEEeeccccce--eEEEEEE-ccCCceEEEEEccCeeehhhh
Confidence 22233333333 5899998 999999999999999999987
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1e-27 Score=209.00 Aligned_cols=239 Identities=20% Similarity=0.301 Sum_probs=192.7
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC-CCEEEEecC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSD 81 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~ 81 (458)
..+...+..+|||++..|.|-+||+..- + +-+++..|..|+..|+++.|++- -.+|++||.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~--~----------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKS--I----------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCcc--c----------------cchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence 3445566789999999999999999841 1 11233468899999999999984 478999999
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
||+|++||++.......+ .+..+.|..+.|+|. .+..++++...|.+++||++....... .+..|.++|.++.|+|+
T Consensus 155 Dg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~-k~~AH~GpV~c~nwhPn 231 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEK-KLTAHNGPVLCLNWHPN 231 (839)
T ss_pred CceEEEEeeecccccccc-cccchhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHH-HhhcccCceEEEeecCC
Confidence 999999999988887777 578889999999995 678999999999999999998765443 38899999999999997
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWD 239 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~ 239 (458)
+ .+|++|+.|+.|+|||+.+.+........ ...++.++.|-|.....|++++ .|-.|+|||++..-
T Consensus 232 r-~~lATGGRDK~vkiWd~t~~~~~~~~tIn---------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-- 299 (839)
T KOG0269|consen 232 R-EWLATGGRDKMVKIWDMTDSRAKPKHTIN---------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-- 299 (839)
T ss_pred C-ceeeecCCCccEEEEeccCCCccceeEEe---------ecceeeeeeeccCccchhhhhhccccceEEEEeecccc--
Confidence 7 79999999999999999877665554433 3457899999999888888876 57789999998643
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEecC-CcEEE
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYND-EFIYL 286 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-~~i~i 286 (458)
.|......|...++.++|.. |...+.+++. +.+..
T Consensus 300 ------------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 300 ------------IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred ------------ccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 45667778889999999976 3346666663 34433
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=3.3e-26 Score=179.68 Aligned_cols=287 Identities=20% Similarity=0.302 Sum_probs=212.3
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcc------------eeeeeccCCCcceeEEEEccC-----CCCeEEEEE
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER------------VKLSFHSGHNDNVFQAKIMPF-----TDDRSIVTC 124 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~s~ 124 (458)
.....+.|||||..|++-+.|..+.+|++.... ....+.......|+..+|-+. .+..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 345578999999999999999999999974211 011111123456777787631 277889999
Q ss_pred cCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCeEEEEecCCCeEEEEeC-CCCCccceeeecccCCCCcc
Q 012712 125 AADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVFYTCGEDGLVQHFDL-RTGAATELFTCRPIDDRRNY 200 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~ 200 (458)
+.+.-|++||..+++.........|... ..+++|+|||. .|+ ++....|+++|+ +.|.....+..... ...+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe-qlf-aGykrcirvFdt~RpGr~c~vy~t~~~-~k~g- 205 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE-QLF-AGYKRCIRVFDTSRPGRDCPVYTTVTK-GKFG- 205 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC-eEe-ecccceEEEeeccCCCCCCcchhhhhc-cccc-
Confidence 9999999999999987655334445544 46899999994 445 456789999999 66654433322111 0111
Q ss_pred eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
..+-+.+++|+|.+...+++|+....+-||.-.... +..+..+|.+.|+.+.|.++|..|.+|+
T Consensus 206 -q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------------pl~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 206 -QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------------PLQLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred -ccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------------ceeeecccCCCeeeEEeccCcCeecccc
Confidence 345688999999888899999999998888776654 3456668999999999999999999998
Q ss_pred --CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE-ecCCCcE
Q 012712 281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF-FGPKCEY 357 (458)
Q Consensus 281 --~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~s~~~~~ 357 (458)
++.|..||++.. ..++..+..|... +-..+.| ..|++++
T Consensus 270 Rk~dkIl~WDiR~~-------------------------------------~~pv~~L~rhv~~-TNQRI~FDld~~~~~ 311 (406)
T KOG2919|consen 270 RKDDKILCWDIRYS-------------------------------------RDPVYALERHVGD-TNQRILFDLDPKGEI 311 (406)
T ss_pred cCCCeEEEEeehhc-------------------------------------cchhhhhhhhccC-ccceEEEecCCCCce
Confidence 568999999874 3344455555442 1122323 3789999
Q ss_pred EEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCCCCeEEEeecC
Q 012712 358 VVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 358 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 406 (458)
|++|+.||.|++||+++ +..+..+..|...++.++++|--.++|+++..
T Consensus 312 LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 312 LASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 99999999999999988 77788888899999999999998888888744
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=9.5e-26 Score=174.89 Aligned_cols=302 Identities=17% Similarity=0.201 Sum_probs=211.1
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEecCCCeEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGSDDRRVIL 87 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~i 87 (458)
.++++++|+.||.|.+||++...--.. +.+.... +-.--...-.+|+-.|.++.|-| |..++.+++.|.+++|
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~----~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV 128 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKH----KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV 128 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhh--ccceehe----eeeccccCCccceeeeeeeEEeeecCceeecccccceEEE
Confidence 478899999999999999984321100 0000000 00001122357889999999999 6678899999999999
Q ss_pred EECCCcceeeeeccCCCcceeEEEEccCCC-CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEE
Q 012712 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTD-DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 166 (458)
||..+.+....| ...+.|++-+++|... -.++|+|..+-.|++.|+.++..... +.+|...|.++.|+|....+|
T Consensus 129 WDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~vL 204 (397)
T KOG4283|consen 129 WDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEWVL 204 (397)
T ss_pred eecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee--eccccCceEEEEeccCceeEE
Confidence 999998887777 4578899999998433 34677788888999999999887655 999999999999999998999
Q ss_pred EEecCCCeEEEEeCCCC-Cccceeeeccc---CCC-CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 167 YTCGEDGLVQHFDLRTG-AATELFTCRPI---DDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~---~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
++|+.||.|++||++.- .+...+..+.. +.. ....+.+.+..++|..+ +.++++++.|..+++|+..+++....
T Consensus 205 atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd-~~~l~~~gtd~r~r~wn~~~G~ntl~ 283 (397)
T KOG4283|consen 205 ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSD-ARYLASCGTDDRIRVWNMESGRNTLR 283 (397)
T ss_pred EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeeccc-chhhhhccCccceEEeecccCccccc
Confidence 99999999999999865 33333322211 111 12336678999999998 78999999999999999988763221
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
++++. + .......-.-+. +-+ +.++..-.++.+.++++-.
T Consensus 284 -~~g~~----~----~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~s----------------------------- 324 (397)
T KOG4283|consen 284 -EFGPI----I----HNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLE----------------------------- 324 (397)
T ss_pred -ccccc----c----ccccccceEEEe-ecccceEEEEecCCeEEEEEccC-----------------------------
Confidence 00000 0 000000111122 222 2333333456788887766
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
+..++.+..|.. .+.+.++ .|+=+...+|..|+.|..|-.
T Consensus 325 ---------gs~ir~l~~h~k--~i~c~~~-~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 325 ---------GSFVRRLSTHLK--RINCAAY-RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ---------ceEEEeeecccc--eeeEEee-cCchhhhhccccCCccccccc
Confidence 445667777743 4777777 999999999999999999976
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=178.65 Aligned_cols=289 Identities=15% Similarity=0.228 Sum_probs=210.2
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
+.|++-|.+||+|+.||.|.|||+.|-..- +.+.+|-.+|++++||+||+.|+|+|.|.
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia---------------------r~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDTFRIA---------------------RMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccccchh---------------------hhhhccccceeEEEecCCCCEeeeecCCc
Confidence 568999999999999999999999975533 45889999999999999999999999999
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc---ccccceEEEEEcC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG---KHQGRAHKLAIEP 160 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 160 (458)
.|++||+..|.+++++ ....+|+...|+|......+++ -.+..-.+-++..+...... .. .-.....+..|.+
T Consensus 88 si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp-~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLP-KDDDGDLNSSASHGVFDR 163 (405)
T ss_pred eeEEEeccCCCceeEE--EccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeecc-CCCccccccccccccccC
Confidence 9999999999998887 5678999999999533333443 33344455555443221110 00 0111223346888
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
.| +++++|...|.+.++|..+.+++..++... ...|..+.++.. +..|+.-+.|+.||.|+++.....+
T Consensus 164 ~g-~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~-g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 164 RG-KYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRK-GRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred CC-CEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEecc-CcEEEEecCCceEEEEehhhhcccC
Confidence 88 789999999999999999999888776532 236888899886 7899999999999999987432111
Q ss_pred CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
......|. .....+. ....-.+++|+.+|.++++++.. .+++|....
T Consensus 233 r~~e~e~~--~K~qDvV--Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~--------------------------- 281 (405)
T KOG1273|consen 233 RDGEVEPE--HKLQDVV--NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI--------------------------- 281 (405)
T ss_pred ccCCcChh--HHHHHHH--hhhhhhheeecCCccEEEeccccceeEEEEecCC---------------------------
Confidence 10000000 0000001 12344678899999999988844 699999887
Q ss_pred ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
+..++.+.|..+. ....+.| +|-...+++- ..|.+++|...
T Consensus 282 -----------GsLVKILhG~kgE-~l~DV~w-hp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 282 -----------GSLVKILHGTKGE-ELLDVNW-HPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred -----------cceeeeecCCchh-heeeccc-ccceeeeeec-cCCceEEEEee
Confidence 4567777777754 3677888 8887788877 68999999864
No 146
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-24 Score=193.58 Aligned_cols=381 Identities=15% Similarity=0.191 Sum_probs=265.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC---CEEEEec
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG---DILISGS 80 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~ 80 (458)
+.|++|++.++... +..|.||...||+++. .+.+|..++..+.+.|.. .++.+++
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECIT---------------------SLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhh---------------------hcccccCccceeeecCCCccceEEEEEe
Confidence 56899999998887 6689999999999884 489999999999998854 4778999
Q ss_pred CCCeEEEEECCCcceeeee-------------------------------------------------------------
Q 012712 81 DDRRVILWDWKTERVKLSF------------------------------------------------------------- 99 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~------------------------------------------------------------- 99 (458)
.||.|++||...++.+..+
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 9999999998765332111
Q ss_pred -----------------------------------------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc-
Q 012712 100 -----------------------------------------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE- 137 (458)
Q Consensus 100 -----------------------------------------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~- 137 (458)
...|.-.+++.+++| .++++|++..||.|.+|.--.
T Consensus 160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~ 237 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGS 237 (792)
T ss_pred hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEecccc
Confidence 001333467889999 999999999999999997543
Q ss_pred -ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 138 -RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 138 -~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
+.......+.=|..+|.+++|+++| .+|++|+.+|.+.+|.+.+++. +.+.. -..+|..+.++|| +
T Consensus 238 ~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k-qfLPR----------Lgs~I~~i~vS~d-s 304 (792)
T KOG1963|consen 238 SDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK-QFLPR----------LGSPILHIVVSPD-S 304 (792)
T ss_pred ccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc-ccccc----------cCCeeEEEEEcCC-C
Confidence 3333333466688999999999999 6899999999999999999983 22221 3457999999998 6
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
.+.+....|+.|.+....+........--.+. .........+-.+.++++|. +..+..+..+.+.+||+.+....
T Consensus 305 ~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~----~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 305 DLYSLVLEDNQIHLIKASDLEIKSTISGIKPP----TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred CeEEEEecCceEEEEeccchhhhhhccCccCC----CccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 78888888999999988766543332211111 01112223456778889994 44455555779999999886544
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc-cceeeeeEEEEecCCCcEEEEec--------CC--
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH-RNCVTVKGVNFFGPKCEYVVSGS--------DC-- 364 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~l~~~~--------~d-- 364 (458)
..+..... ....+. .....+++++. +..|.+++++- .|
T Consensus 381 ~~~~v~~~------------------------------n~~~~~~n~~v~itav~~-~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 381 YKLQVCDE------------------------------NYSDGDVNIQVGITAVAR-SRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred eeEEEEee------------------------------cccCCcceeEEeeeeehh-hccceEEEEeeeeehhhhccCce
Confidence 33210000 000001 11123677776 77799998863 23
Q ss_pred CeEEEEEecCCeE----EEE-eecCCceeeEEEec-CCCC-eEEEeecCCcEEEecCCccc----------ccc-ccccc
Q 012712 365 GRIFIWKKKGGEL----IRV-IEADRHVVNCIEPH-PHST-VLASSGIESDIKILTPNAAD----------RAT-LPTNI 426 (458)
Q Consensus 365 g~i~iwd~~~~~~----~~~-~~~~~~~v~~~~~s-~~~~-~l~s~~~d~~i~iw~~~~~~----------~~~-~~~~~ 426 (458)
-.+++|-...... ... ...|...+...++. |... ..++++.||.++||-+.+.+ +.. -.-|.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 3578897654332 222 24577655554443 4333 89999999999999884321 111 11366
Q ss_pred ccEEEEEEecCCcEEEeeecCCceEEEEEec
Q 012712 427 EQVCFSIYSADYWWSKSQNFSCSILLFEWLV 457 (458)
Q Consensus 427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 457 (458)
.++++++||.||..| +.+.|++|.+||+..
T Consensus 510 ~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 510 TPITALCFSQDGSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred CcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence 779999999999777 557888999999864
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=6e-26 Score=186.30 Aligned_cols=305 Identities=18% Similarity=0.242 Sum_probs=218.4
Q ss_pred eeeeEeecCCCceEEEEEecCC--CEEEEecCCCeEEEEECCCcce----eeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERV----KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
......+-|.++|++++|+|.. +++|+|+.-|+|-+||+.+.+. +..+ ..|..+|.++.|+|. +...+++.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~-n~s~i~ssS 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPA-NTSQIYSSS 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCC-Chhheeeec
Confidence 4556677899999999999955 5888999999999999953322 2333 789999999999994 667899999
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeec
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 204 (458)
.||+|++-|++.........+......+..+.|+.+.+ .++.+..=|...+||++++.. ...+.. +..
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l----------h~k 323 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL----------HKK 323 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh----------hhc
Confidence 99999999998765433322333445677788888874 456666667999999998765 333332 444
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF 283 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 283 (458)
.|.+++++|..+.++++++.|++.+|||+|....... |....-.|...|.+..|||.+-.|++.+ ++.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~ 392 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE 392 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----------cceecccccceeeeeEEcCCCCceEeeccCCc
Confidence 7999999999899999999999999999998653221 1222345788999999999865566555 779
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee-cCcc--ceeeeeEEEEecCCCcEEEE
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY-KGHR--NCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i~~~~~~s~~~~~l~~ 360 (458)
|++||..--... ..+...+ ..+. ...+.....| .|+..++++
T Consensus 393 IRv~dss~~sa~----------------------------------~~p~~~I~Hn~~t~RwlT~fKA~W-~P~~~li~v 437 (498)
T KOG4328|consen 393 IRVFDSSCISAK----------------------------------DEPLGTIPHNNRTGRWLTPFKAAW-DPDYNLIVV 437 (498)
T ss_pred eEEeeccccccc----------------------------------CCccceeeccCcccccccchhhee-CCCccEEEE
Confidence 999997410000 0011111 1111 1122455666 999999999
Q ss_pred ecCCCeEEEEEecCCeEEEEeecCCc-eeeE-EEecCCCCeEEE-eecCCcEEEecCC
Q 012712 361 GSDCGRIFIWKKKGGELIRVIEADRH-VVNC-IEPHPHSTVLAS-SGIESDIKILTPN 415 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-~~~s~~~~~l~s-~~~d~~i~iw~~~ 415 (458)
|..-..|-|+|-+.++.+..+..... .|.+ ..|+|-+..+++ ++..|.|+||.-+
T Consensus 438 g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 438 GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 99999999999988887877654332 4444 489998884554 4567888888654
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=2.8e-26 Score=180.40 Aligned_cols=325 Identities=11% Similarity=0.204 Sum_probs=228.2
Q ss_pred eeeeeEe-ecCCCceEEEEEec-----CCCEEEEecCCCeEEEEECCCcc---eeeeec-cCCCcceeEEEEccCC--CC
Q 012712 51 LGIYAKL-DKHRGCVNTVSFNT-----DGDILISGSDDRRVILWDWKTER---VKLSFH-SGHNDNVFQAKIMPFT--DD 118 (458)
Q Consensus 51 ~~~~~~~-~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~~~~~~i~~~~~~~~~--~~ 118 (458)
++....+ ..|+.+|..++|.+ +-+.+|+++.+ .+.+|...... .++.+. ..|.+..+.++|+-.. ..
T Consensus 27 yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 27 YKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred eEeeeehhccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 3444434 57899999999985 33577887764 68899876443 233332 2477888888987521 24
Q ss_pred eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC
Q 012712 119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR 198 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (458)
.++|.++.-|.|+|.|+.+++.... +.+|...|+.+.++|+.++++++++.|..|++|++++..++..+... .
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~--~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~-----e 178 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKN--YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV-----E 178 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccc--eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc-----c
Confidence 5789999999999999988877655 88999999999999999999999999999999999999999888643 3
Q ss_pred cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC-------------CCCCCcCCCcccccccccee
Q 012712 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG-------------QPADYFCPPNLIGDEQVGIT 265 (458)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~i~ 265 (458)
+ |...|.++.|+++ +.+|++++.|.++.+|++...+....++.. .+...+.......-|...|-
T Consensus 179 g--HrdeVLSvD~~~~-gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 179 G--HRDEVLSVDFSLD-GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred c--ccCcEEEEEEcCC-CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 3 5557999999998 689999999999999999865443322211 11111111112334556666
Q ss_pred EEEeCCCCcEEEEec-CCcEEEEEccC-CCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcccee
Q 012712 266 GLAFSDQSELLVSYN-DEFIYLFTQDM-GLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCV 343 (458)
Q Consensus 266 ~~~~~~~~~~l~~~~-~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (458)
|+.|-- .++++-+ ++.|..|.... ......... +... ......+.-.....
T Consensus 256 Cvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp-~es~------------------------~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 256 CVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKP-PESA------------------------TTILGEFDYPMCDI 308 (385)
T ss_pred HHHHHh--hheeecccCceEEEEecchhhhhhhccCC-Cccc------------------------eeeeeEeccCccce
Confidence 666654 5777766 66899998732 111111100 0000 11222333333333
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE--EEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI--RVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
+....+| +|-++.||.|.+.|.|++||++..++. .++.. ....|...+|+.|+.+|+...+|++|.-||.
T Consensus 309 Wfirf~~-d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 309 WFIRFAF-DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEEEEee-cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3455566 899999999999999999999877653 23322 2357999999999999999999999999985
No 149
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-26 Score=183.17 Aligned_cols=305 Identities=20% Similarity=0.250 Sum_probs=225.9
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
.+-+.+|.+.|+++.||.++++||+|+.|..+++|.++. .+++......|...|.|++|.. ....+++|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCc
Confidence 345679999999999999999999999999999999853 3444444456778999999998 88999999999
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
++|..-|+++.+.+....-....+.|..+..+|.. +.|++.+.++.|.+||.+.........+... ......
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-------~~~~F~ 198 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-------SGKNFY 198 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecC-------CCccce
Confidence 99999999988776653333334589999999997 7899999999999999987763222222211 334578
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYL 286 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i 286 (458)
.+.|+|..+.+|++.+..+-+.+||.+.... ++.......-+......-.+..|+|+|..+.+.-.+ .-.+
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~--------~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQAR--------PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccc--------hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 8999998889999999999999999987642 111100011111112234678899999888777655 4667
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec----CccceeeeeEEEEecCCCcEEEEec
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK----GHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
||+-.... .+..+. +..+..++.+++| - +...+++|+
T Consensus 271 ~D~~S~R~-------------------------------------~V~k~D~N~~GY~N~~T~KS~~F-~-~D~~v~tGS 311 (609)
T KOG4227|consen 271 FDFISQRC-------------------------------------FVLKSDHNPNGYCNIKTIKSMTF-I-DDYTVATGS 311 (609)
T ss_pred eeeecccc-------------------------------------eeEeccCCCCcceeeeeeeeeee-e-cceeeeccC
Confidence 77765211 111111 2233445788888 3 445699999
Q ss_pred CCCeEEEEEecCC-----------------------eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 363 DCGRIFIWKKKGG-----------------------ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 363 ~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
.+-.|++|.+... +.+..+++|...++.+.|+|...+|++.+-.+.++||...
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 9999999987421 2235678999999999999999999999999999999754
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=7.5e-26 Score=193.26 Aligned_cols=297 Identities=18% Similarity=0.201 Sum_probs=204.2
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+....|+.+.+||.|.++|...-....+ -..+.....|.+.|..+.|.|....|++++.|.++++
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~e---------------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~ 126 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLE---------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRP 126 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchh---------------hhhhcccccccceeEeeccCCCceeEEEccCCceeee
Confidence 3456699999999999999984322100 0122446689999999999997788999999999999
Q ss_pred EECCCcceeee-eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-------------------------
Q 012712 88 WDWKTERVKLS-FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV------------------------- 141 (458)
Q Consensus 88 wd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~------------------------- 141 (458)
||++..+.... ...+|...|.+++|.|. +...+++|+.||.|.|||++....-
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 99998887655 23699999999999994 6678899999999999999654310
Q ss_pred eeeeccccccceEE---EEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcc-eeecceEEEEECCCCC
Q 012712 142 ETKLLGKHQGRAHK---LAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNY-MTVVNLNAIAIDPRNA 216 (458)
Q Consensus 142 ~~~~~~~~~~~v~~---~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~ 216 (458)
.......+...|.+ +.+..|. ..|++++. |+.|++||++..................+ .....+.++..... |
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-G 283 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-G 283 (720)
T ss_pred cccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-C
Confidence 00011234444444 4455566 56788777 99999999998765443332222222111 12335778888776 4
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc--cceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ--VGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
.++++.+.|+.|+.|++......- .....++. ..-..-..+|++.++++++ +...++|.+.+.
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP-------------~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~- 349 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISP-------------VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSP- 349 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCc-------------hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCc-
Confidence 566556669999999999875321 11111111 1112234689999999999 558999999874
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEe
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~ 372 (458)
......+.+|.-. |++++| .|. -.-++++++|.++++|++
T Consensus 350 ------------------------------------e~~~~~l~Ght~e--Vt~V~w-~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 350 ------------------------------------EAPPALLLGHTRE--VTTVRW-LPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ------------------------------------cCChhhhhCcceE--EEEEee-ccccCCCceeeccCcceEEEec
Confidence 2345567788775 778887 442 234566699999999998
Q ss_pred cCC
Q 012712 373 KGG 375 (458)
Q Consensus 373 ~~~ 375 (458)
..+
T Consensus 391 ~~~ 393 (720)
T KOG0321|consen 391 SNG 393 (720)
T ss_pred cCc
Confidence 654
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.95 E-value=7e-26 Score=183.14 Aligned_cols=313 Identities=15% Similarity=0.212 Sum_probs=211.4
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEEC
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDW 90 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~ 90 (458)
.+|+||+.|..|+||.++.++.-. +...++....|..|...|+++.|+|+|.+||+|+.+|.|.+|..
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~------------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~ 94 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGG------------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQ 94 (434)
T ss_pred cceecccCccceeeeeeeecCCCC------------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEe
Confidence 389999999999999999665432 12567888899999999999999999999999999999999976
Q ss_pred C--------C-----c--ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE
Q 012712 91 K--------T-----E--RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (458)
Q Consensus 91 ~--------~-----~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~ 155 (458)
. + . -.+...+.+|...|+.++|+| ++.++++++.|..+++||+..+..... +..|...+..
T Consensus 95 ~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~G~l~~~--~~dh~~yvqg 170 (434)
T KOG1009|consen 95 GDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHAGQLLAI--LDDHEHYVQG 170 (434)
T ss_pred cCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEeccceeEee--ccccccccce
Confidence 5 2 1 123344578999999999999 999999999999999999999887766 8899999999
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc-------------eeecceEEEEECCCCCcEEEEe
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY-------------MTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
++|.|-+ +++++-+.|...+.+.+...+..............++ ....-...++|+|+ +.++++.
T Consensus 171 vawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd-G~llvtP 248 (434)
T KOG1009|consen 171 VAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD-GSLLVTP 248 (434)
T ss_pred eecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC-CcEEEcc
Confidence 9999998 6788888888777776655443332221000000000 01122456778887 5666654
Q ss_pred cC----CCe-----EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCC
Q 012712 223 GS----DEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGL 293 (458)
Q Consensus 223 ~~----dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~ 293 (458)
.. .+. .++|+-...+ .|.........+...+.++| ..|.++.
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~--------------rP~~~lp~~~k~~lavr~~p-------------Vy~elrp-- 299 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLK--------------RPAARLPSPKKPALAVRFSP-------------VYYELRP-- 299 (434)
T ss_pred cceeeeCCceeeceeEeecccccc--------------CceeecCCCCcceEEEEeee-------------eEEEecc--
Confidence 31 111 1222211110 11111111222233333333 1122111
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
-.....+.. -|-+-.+|.++ ...|++||.+
T Consensus 300 ---------------------------------------------~~~~~~~~~----lpyrlvfaiAt-~~svyvydtq 329 (434)
T KOG1009|consen 300 ---------------------------------------------LSSEKFLFV----LPYRLVFAIAT-KNSVYVYDTQ 329 (434)
T ss_pred ---------------------------------------------ccccccccc----cccceEEEEee-cceEEEeccc
Confidence 111000111 34444555565 5689999999
Q ss_pred CCeEEEEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 374 GGELIRVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 374 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+.+++.... -|-..|++++|++||..|+..+.||...+-.++..++-
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 888887664 48889999999999999999999999888777765543
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.9e-25 Score=173.22 Aligned_cols=272 Identities=15% Similarity=0.217 Sum_probs=197.1
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcC-CCCeEEEEecCCC
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEP-GSPHVFYTCGEDG 173 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~~~dg 173 (458)
..+..+|..-|.++.|.+ .|+.+|+|+.|++++|||.+.... ..+.....|.+.|..+.|.+ .-.+.+++++.|+
T Consensus 6 ~pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred cccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 344568999999999999 999999999999999999755433 33445778999999999964 4358999999999
Q ss_pred eEEEEeCCCCCccc----eeeecccCCCCcceeecceEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 174 LVQHFDLRTGAATE----LFTCRPIDDRRNYMTVVNLNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 174 ~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
++.||.-....... -.......+ ....|+.+.|.|.. |-.+++++.||.+|||+....-......+....
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~D-----srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVD-----SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeec-----CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999753111110 001111111 34579999999962 568899999999999998655433222221111
Q ss_pred CCcCCCccccccccceeEEEeCCC---CcEEEEecCC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQ---SELLVSYNDE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
.. .......+..+..|+.|+|. ..+||.|+++ .++||........
T Consensus 159 ~~--~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK------------------------ 212 (361)
T KOG2445|consen 159 QN--VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK------------------------ 212 (361)
T ss_pred hh--ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce------------------------
Confidence 10 01122334567789999975 3689999876 6899987664321
Q ss_pred cCCCCCCcccccCceeecCccceeeeeEEEEecCCC----cEEEEecCCCeEEEEEecCC--------------------
Q 012712 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC----EYVVSGSDCGRIFIWKKKGG-------------------- 375 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~-------------------- 375 (458)
...+..+.+|..+ |+.++| .|+- ..||+++.|| |+||.+...
T Consensus 213 ----------w~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 213 ----------WLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------eeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 2344566678775 999999 8863 5889999999 999998631
Q ss_pred eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
+.+..+..|++.|..+.|+-.|..|++.|.||+||+|...
T Consensus 279 ~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 279 EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 3445677899999999999999999999999999999764
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=182.62 Aligned_cols=293 Identities=13% Similarity=0.138 Sum_probs=213.8
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (458)
.-+.+.|++++|+|..+-+++|+|..-|+|-+||+.+.+. .....+..|..+|.++.|+|.+...+++.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 4578899999999954457889999999999999963322 22334778999999999999998899999999999999
Q ss_pred eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 179 DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
|++.......+.... ....+..+.|+.++ ..++.+..=|...+||+++.... .....
T Consensus 263 D~~~~i~e~v~s~~~--------d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~--------------~~~~~ 319 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDT--------DNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSE--------------YENLR 319 (498)
T ss_pred eecchhhHHHhhcCc--------cceeeeeccccCCC-ccEEEeecccceEEEEeecCCcc--------------chhhh
Confidence 999876555444321 33357788888874 45556666669999999987632 12333
Q ss_pred ccccceeEEEeCCCC-cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 259 DEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
-|...|+.++++|.. .+|++++ +++.+|||++.-..... +.-..
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------------------------------p~lst 365 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------------------------------PFLST 365 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------------------------------cceec
Confidence 456699999999976 4677877 66899999987322110 12223
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec----CCeEEEEeecCCc------eeeEEEecCCCCeEEEeecC
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK----GGELIRVIEADRH------VVNCIEPHPHSTVLASSGIE 406 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~------~v~~~~~s~~~~~l~s~~~d 406 (458)
..|... |.+..| ||.+..|++.+.|.+|+|||.. .-++..++. |.. .....+|.|+..++++|-.-
T Consensus 366 ~~Hrrs--V~sAyF-SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~ 441 (498)
T KOG4328|consen 366 LPHRRS--VNSAYF-SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYP 441 (498)
T ss_pred ccccce--eeeeEE-cCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccC
Confidence 345553 788887 9999889999999999999983 334445554 321 24567899999999999999
Q ss_pred CcEEEecCCccccc-ccccccc-cEEEE-EEecCCc-EEEeeecCCceEEEE
Q 012712 407 SDIKILTPNAADRA-TLPTNIE-QVCFS-IYSADYW-WSKSQNFSCSILLFE 454 (458)
Q Consensus 407 ~~i~iw~~~~~~~~-~~~~~~~-~v~~~-~~s~d~~-~l~s~~~d~~i~~w~ 454 (458)
..|-|+|-..++.. .+..... .|.++ .|+|-+. +++-++..|.|.||-
T Consensus 442 r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 442 RPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred cceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999999888744 3222222 35443 5999997 555566677777773
No 154
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.9e-27 Score=205.75 Aligned_cols=237 Identities=19% Similarity=0.319 Sum_probs=201.8
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
+-.|...|.++..-..++.+++|+.|..+-+|.......+..+ .+|..+|.++.|++ +..+|++|+.+|+|++||++
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~--~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDT--SERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCc--chhhhcccccCCceeeeehh
Confidence 4578999999998777899999999999999998877777765 79999999999999 99999999999999999999
Q ss_pred cccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 137 ERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
..+.+.+ +.+|...+.++.|+|-+ .++++++.|+.+++||.+...+...+.. +...+.++.|+|+ |
T Consensus 101 eAk~vrt--Ltgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s----------~~~vv~~l~lsP~-G 166 (825)
T KOG0267|consen 101 EAKIVRT--LTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKS----------HTRVVDVLRLSPD-G 166 (825)
T ss_pred hhhhhhh--hhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecC----------CcceeEEEeecCC-C
Confidence 8887765 99999999999999999 6789999999999999997777766653 3345788899997 7
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCC
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPN 296 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~ 296 (458)
.+++.+++|..+++||+..+++
T Consensus 167 r~v~~g~ed~tvki~d~~agk~---------------------------------------------------------- 188 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKL---------------------------------------------------------- 188 (825)
T ss_pred ceeeccCCcceeeeeccccccc----------------------------------------------------------
Confidence 8999999999999999877653
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 376 (458)
...|..|... +..+.| +|..-++++|+.|+++++||+++.+
T Consensus 189 ------------------------------------~~ef~~~e~~--v~sle~-hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 189 ------------------------------------SKEFKSHEGK--VQSLEF-HPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ------------------------------------cccccccccc--cccccc-CchhhhhccCCCCceeeeeccceeE
Confidence 2334445443 566666 8888889999999999999999999
Q ss_pred EEEEeecCCceeeEEEecCCCCeEEEeecCC
Q 012712 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIES 407 (458)
Q Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~ 407 (458)
.+.........|.+++|+|+++.+++|..+.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EeeccCCccCCceeeeecCCceeeecCchhh
Confidence 8888887788999999999999998886553
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-24 Score=170.05 Aligned_cols=292 Identities=14% Similarity=0.193 Sum_probs=199.3
Q ss_pred ecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 58 DKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 58 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
.+|.+-|.++.|.+-|+++|||+.|++|+|||.++.. +.... +.|.+.|..+.|.+.+-|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 4799999999999999999999999999999975443 23333 689999999999987789999999999999999
Q ss_pred ecccc-------cceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeecccCC---CCccee
Q 012712 134 QILER-------GGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD---RRNYMT 202 (458)
Q Consensus 134 ~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~ 202 (458)
.=... +.+....+......|+.+.|.|.. .-.+++++.||.++||+....-............ ...-.+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75211 223334566677899999999964 2578999999999999876543332221110000 000013
Q ss_pred ecceEEEEECCC--CCcEEEEecCC-----CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-C-
Q 012712 203 VVNLNAIAIDPR--NANLFAVAGSD-----EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-S- 273 (458)
Q Consensus 203 ~~~v~~~~~~p~--~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~- 273 (458)
..+..|+.|+|. ...+|++|+.+ +.+.||........ .........+..+|+.++|.|+ |
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-----------w~kva~L~d~~dpI~di~wAPn~Gr 237 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-----------WLKVAELPDHTDPIRDISWAPNIGR 237 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-----------eeeehhcCCCCCcceeeeeccccCC
Confidence 345789999875 23578888766 46888876544210 0112233468899999999997 3
Q ss_pred --cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 274 --ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 274 --~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
.+||+++.+.|+||.+................. ...-....+..+.+|... |..+.|
T Consensus 238 ~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~------------------~~~l~v~~vs~~~~H~~~--VWrv~w- 296 (361)
T KOG2445|consen 238 SYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDL------------------MTDLPVEKVSELDDHNGE--VWRVRW- 296 (361)
T ss_pred ceeeEEEeecCcEEEEEEeeccchhhhhcccCCCC------------------ccccceEEeeeccCCCCc--eEEEEE-
Confidence 478888866799999885321110000000000 000012345567788875 899999
Q ss_pred cCCCcEEEEecCCCeEEEEEecC---CeEEEEee
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKG---GELIRVIE 382 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~ 382 (458)
.-.|..|++.+.||.||+|...- .++...++
T Consensus 297 NmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~ 330 (361)
T KOG2445|consen 297 NMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLK 330 (361)
T ss_pred eeeeeEEeecCCCceeeehhhhhhhhheeeeEEe
Confidence 88999999999999999998642 34555554
No 156
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.5e-27 Score=204.19 Aligned_cols=255 Identities=17% Similarity=0.243 Sum_probs=211.7
Q ss_pred CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
...++.....-.+++|+.+. +..|...+.++..-..+ ..+++|+.|..+-+|.+.....+..+.+
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~--------~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~------ 68 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE--------FVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTG------ 68 (825)
T ss_pred ccccceeeeeeccccccchh--------hhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeec------
Confidence 34445555556677887633 55688888888885555 7899999999999999887776665544
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
+..+|.++.|++. ..+|++|+.+|+|++||+...+. ...+.+|...+.++.|+|-+.+.+
T Consensus 69 ----hespIeSl~f~~~-E~LlaagsasgtiK~wDleeAk~---------------vrtLtgh~~~~~sv~f~P~~~~~a 128 (825)
T KOG0267|consen 69 ----HESPIESLTFDTS-ERLLAAGSASGTIKVWDLEEAKI---------------VRTLTGHLLNITSVDFHPYGEFFA 128 (825)
T ss_pred ----cCCcceeeecCcc-hhhhcccccCCceeeeehhhhhh---------------hhhhhccccCcceeeeccceEEec
Confidence 6668999999997 68999999999999999997653 234556788999999999999999
Q ss_pred EecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712 278 SYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (458)
Q Consensus 278 ~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~ 356 (458)
.++.+ .+.+||.+. ..+...+.+|... +..+.| +|+|+
T Consensus 129 ~gStdtd~~iwD~Rk--------------------------------------~Gc~~~~~s~~~v--v~~l~l-sP~Gr 167 (825)
T KOG0267|consen 129 SGSTDTDLKIWDIRK--------------------------------------KGCSHTYKSHTRV--VDVLRL-SPDGR 167 (825)
T ss_pred cccccccceehhhhc--------------------------------------cCceeeecCCcce--eEEEee-cCCCc
Confidence 99855 799999885 3467778887764 677787 99999
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe
Q 012712 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS 435 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s 435 (458)
+++.|++|..++|||+..|+...+|..|.+.+.++.|+|..-++++|+.|+++++||+++-+.. ........|.+++|+
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999977665 444456779999999
Q ss_pred cCCcEEEeeecCC
Q 012712 436 ADYWWSKSQNFSC 448 (458)
Q Consensus 436 ~d~~~l~s~~~d~ 448 (458)
|+|+.+++|..+.
T Consensus 248 ~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 248 PDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeecCchhh
Confidence 9999998876653
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-25 Score=175.14 Aligned_cols=290 Identities=16% Similarity=0.183 Sum_probs=199.1
Q ss_pred CeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEecCCCeEEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILW 88 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iw 88 (458)
.++|++.+.|.|++||..+|+.+. .+++|...++.++|.. ....+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~---------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE---------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh---------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 568999999999999999998874 4899999999999987 45789999999999999
Q ss_pred ECCCcceeeeec-cCCC-cceeEEEEccCCCCeEEEEEcC----CCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 89 DWKTERVKLSFH-SGHN-DNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 89 d~~~~~~~~~~~-~~~~-~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
|++.......+. ..+. .+..+++-.. .++.+++|.. +-.+.+||++..+.........|.+.|+++.|+|..
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 998876655543 3333 4566666654 5667777654 567999999988775545577899999999999999
Q ss_pred CeEEEEecCCCeEEEEeCCCCCcc----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
+++|++|+.||-|.+||++..... ..+. +...|.++.|..++-+.+.+-+......+|+++.+..
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-----------~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-----------HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhc-----------ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 999999999999999999865322 2222 4446899999987556788888999999999998763
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEE-ec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCC
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVS-YN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSD 315 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~-~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (458)
... +..|............ ...+... .+| +...++. ++ .+...++-+......
T Consensus 247 ~~~--~~~~~~~~~d~r~~~~-~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~-------------------- 302 (376)
T KOG1188|consen 247 ETW--LENPDVSADDLRKEDN-CDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSG-------------------- 302 (376)
T ss_pred hhc--ccCccchhhhHHhhhh-hhheeec-ccCCCcceEEEeccccCceeEEEeeecccc--------------------
Confidence 222 1111000000000000 0111111 123 2333333 33 344555544321100
Q ss_pred CccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 316 HTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
.....+..+.++... .|+++.| ...+..+++|++||.+.+|..
T Consensus 303 ------------~~~~~~a~l~g~~~e-iVR~i~~-~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 303 ------------SLLTEPAILQGGHEE-IVRDILF-DVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ------------cccCccccccCCcHH-HHHHHhh-hcccceeeccCCCceEEEEec
Confidence 013345566664433 3778877 788899999999999999986
No 158
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=3e-24 Score=183.76 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=140.5
Q ss_pred ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~ 299 (458)
.+..|.|-||+++....+..- ....+. ....|+.+.|.| |...|+.++ ++.|++|.+..+......
T Consensus 599 ~g~gG~iai~el~~PGrLPDg---------v~p~l~--Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~- 666 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDG---------VMPGLF--NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE- 666 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcc---------cccccc--cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc-
Confidence 355788999999865432110 011122 245799999999 556777777 458999999876443331
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEE
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
..+...+..|... |.++.| +| -...|++++.|-+|++||+.+++..
T Consensus 667 ------------------------------~tPe~~lt~h~eK--I~slRf-HPLAadvLa~asyd~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 667 ------------------------------MTPEKILTIHGEK--ITSLRF-HPLAADVLAVASYDSTIELWDLANAKLY 713 (1012)
T ss_pred ------------------------------CCcceeeecccce--EEEEEe-cchhhhHhhhhhccceeeeeehhhhhhh
Confidence 2345677788775 899998 77 3568899999999999999999999
Q ss_pred EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccc---cccEEEEEEecCCcEEEeeecCC----ceE
Q 012712 379 RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTN---IEQVCFSIYSADYWWSKSQNFSC----SIL 451 (458)
Q Consensus 379 ~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~s~~~d~----~i~ 451 (458)
..+.+|.+.|.+++|||||+.+|+.+.||+|++|+...++.....+. ..+-..+.|.-||+++++.++|. .|.
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhh
Confidence 99999999999999999999999999999999999987754322211 12345678999999999988885 355
Q ss_pred EEE
Q 012712 452 LFE 454 (458)
Q Consensus 452 ~w~ 454 (458)
+||
T Consensus 794 ~Y~ 796 (1012)
T KOG1445|consen 794 MYD 796 (1012)
T ss_pred hhh
Confidence 554
No 159
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=178.16 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=188.6
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEE
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVIL 87 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~i 87 (458)
+..+.++=++.|.|+||++.. .+.....+-+... ....+++.++.+|.+.=.+|+|||-. ..|+||.--+.|++
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~~~---~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~l 238 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAP--HLNALSEPGLEVK---DSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHL 238 (440)
T ss_pred CcceeeeecccCcEEEEEchh--hhhhhcCcccccc---ccccCceEEecccCccceeeecccccccccccCccccceEe
Confidence 445677778999999999872 2211111111111 13457888999999999999999932 34788888889999
Q ss_pred EECCCcceee--eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712 88 WDWKTERVKL--SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 88 wd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (458)
|...++.-.. .-..+|+..|-.++|||. ....|++|+-||+|+|||++.+........+.|.+.|+.|.|+...+ +
T Consensus 239 w~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-l 316 (440)
T KOG0302|consen 239 WEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-L 316 (440)
T ss_pred eeeccCceeecCccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-e
Confidence 9988865321 112579999999999994 56789999999999999999985554455688999999999999985 8
Q ss_pred EEEecCCCeEEEEeCCCCC---ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC-
Q 012712 166 FYTCGEDGLVQHFDLRTGA---ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS- 241 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~- 241 (458)
|++|+.||+++|||+++-+ ++..+.. |..+|+++.|+|.....|++++.|.+|.+||+....-...
T Consensus 317 LasG~DdGt~~iwDLR~~~~~~pVA~fk~----------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 317 LASGGDDGTLSIWDLRQFKSGQPVATFKY----------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eeecCCCceEEEEEhhhccCCCcceeEEe----------ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 9999999999999998654 3444443 6668999999998788999999999999999975432111
Q ss_pred --ccCCCCCCCcCCCccc-cccccceeEEEeCCCC-cEEEEecCCcEEEEE
Q 012712 242 --TDFGQPADYFCPPNLI-GDEQVGITGLAFSDQS-ELLVSYNDEFIYLFT 288 (458)
Q Consensus 242 --~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~~ 288 (458)
..... +....++-++ ...+..+..+.|+++- -+|++.+-+.+.+|.
T Consensus 387 ~~~a~~~-L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 387 DQEAAEG-LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred ccccccc-hhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 00000 1111222222 2235678889999874 366666666666664
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=177.17 Aligned_cols=282 Identities=10% Similarity=0.168 Sum_probs=203.8
Q ss_pred EEEEecCCCEEEEecCC---CeEEEEECCCcceeeeeccCCC----cceeEEEEccC-----CCCeEEEEEcCCCcEEEe
Q 012712 66 TVSFNTDGDILISGSDD---RRVILWDWKTERVKLSFHSGHN----DNVFQAKIMPF-----TDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~----~~i~~~~~~~~-----~~~~~l~s~~~dg~i~vw 133 (458)
.+..-|..++++++-.+ ..+.+|=.+..+.-. + ..|. ....|++|... ..|+++|.|..|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nl-Y-vHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENL-Y-VHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcce-e-EecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 45556766666666432 344444443333211 1 1221 23356666542 246899999999999999
Q ss_pred ecccccceee-------------------eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeeccc
Q 012712 134 QILERGGVET-------------------KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI 194 (458)
Q Consensus 134 ~~~~~~~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 194 (458)
|+.-...+.. ..-.+|+..|.+++|+..-+++|++|+.|.+|++||+.++++...+..
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~--- 284 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITH--- 284 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhh---
Confidence 9853322110 112368999999999998889999999999999999999999888863
Q ss_pred CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712 195 DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (458)
Q Consensus 195 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (458)
+...|.++.|+|..+.++++|+.|++|.+.|.|.... .+..|.-+|
T Consensus 285 -------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--------------------------s~~~wk~~g- 330 (463)
T KOG0270|consen 285 -------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--------------------------SGKEWKFDG- 330 (463)
T ss_pred -------cCCceeEEEecCCCceEEEeccccceEEeeeccCccc--------------------------cCceEEecc-
Confidence 5568999999999899999999999999999985321 011122111
Q ss_pred EEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712 275 LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (458)
Q Consensus 275 ~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (458)
.|..++| .|.
T Consensus 331 ---------------------------------------------------------------------~VEkv~w-~~~ 340 (463)
T KOG0270|consen 331 ---------------------------------------------------------------------EVEKVAW-DPH 340 (463)
T ss_pred ---------------------------------------------------------------------ceEEEEe-cCC
Confidence 1455555 443
Q ss_pred C-cEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCcccccccccccc---c
Q 012712 355 C-EYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRATLPTNIE---Q 428 (458)
Q Consensus 355 ~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~~~~~~~~---~ 428 (458)
. ..++++..||+|+-+|++.. +++.++++|.++|.++++++.-+ +|+|++.|+.+++|++..........|.. +
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~r 420 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGR 420 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccc
Confidence 3 46677889999999999864 89999999999999999987654 78899999999999998776655444443 3
Q ss_pred EEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712 429 VCFSIYSADY-WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 429 v~~~~~s~d~-~~l~s~~~d~~i~~w~~~ 456 (458)
..+.++.|+- -++|.|+..+.++|||++
T Consensus 421 l~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 421 LHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred eeecccCCCcceEEEecCccceEEEeecc
Confidence 5666777777 677888988899999985
No 161
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=172.51 Aligned_cols=290 Identities=13% Similarity=0.168 Sum_probs=202.2
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-cc
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GR 152 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~ 152 (458)
..+|++-..|.|++||..+++.+..+ .++...++.++|..-.....+.+|+.||+|++||++............+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 56888888999999999999888888 78999999999986223567899999999999999998877766666666 56
Q ss_pred eEEEEEcCCCCeEEEEec----CCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712 153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (458)
..+++.+-.+ +++++|. .+-.|.+||+|..+. +..+.. . |...|+++.|+|.++++|++|+.||.
T Consensus 120 f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e-------S--H~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 120 FICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNE-------S--HNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhh-------h--ccCcceeEEecCCCCCeEEeecccce
Confidence 6777776555 5677764 356799999998765 333321 1 56689999999999999999999999
Q ss_pred EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
|.+||+........ ... .-.+...|.++.|..++ +..+....++..+|+++.+.....++.+....
T Consensus 190 vnlfD~~~d~EeDa-----------L~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 190 VNLFDTKKDNEEDA-----------LLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred EEeeecCCCcchhh-----------HHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 99999987532111 111 22346679999999988 65555668899999998876333322111100
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec---CC---eEE
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK---GG---ELI 378 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~---~~~ 378 (458)
. ......+...+..... ..++...+.++. -|+..++-+. ++ +.+
T Consensus 258 ~----------------------------d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~ 308 (376)
T KOG1188|consen 258 D----------------------------DLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEP 308 (376)
T ss_pred h----------------------------hHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCcc
Confidence 0 0000000001222211 334445555444 4555555443 22 344
Q ss_pred EEeec-CCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 379 RVIEA-DRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 379 ~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
..+.+ |...|.++.|...+.++.|||+||.+.+|..+
T Consensus 309 a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 309 AILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55666 66788999999999999999999999999853
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-25 Score=205.34 Aligned_cols=290 Identities=15% Similarity=0.225 Sum_probs=217.5
Q ss_pred EEEEecCCC-EEEEe----------cCCCeEEEEECCCcce------eeeeccCCCcceeEEEEccCCCCe--EEEEEcC
Q 012712 66 TVSFNTDGD-ILISG----------SDDRRVILWDWKTERV------KLSFHSGHNDNVFQAKIMPFTDDR--SIVTCAA 126 (458)
Q Consensus 66 ~~~~s~~~~-~l~s~----------~~d~~i~iwd~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~--~l~s~~~ 126 (458)
.++|+|++. ++|+| +.+.++.||.+..... ...+ .-....+.++|.+..++. +|+.|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~--~s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL--QSSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc--cccccceeeeecccCCCccceeecccc
Confidence 578999886 55544 3355667776543222 1222 234578899999933222 4888999
Q ss_pred CCcEEEeecccc---c-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCccee
Q 012712 127 DGQVRHAQILER---G-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 127 dg~i~vw~~~~~---~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (458)
||.|.+||...- . .........|++.|..+.|++..+++|++|+.||.|.|||+...+........ ..
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~--------~~ 160 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQ--------AP 160 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCC--------CC
Confidence 999999998652 1 11223367899999999999999889999999999999999886544333211 03
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec-
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN- 280 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~- 280 (458)
...|.+++|+.....+|++++.+|++.|||++..+.+-.+. .......+..++|+|+.. .|++++
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-------------~~~~~~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-------------DTPGRMHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-------------cCCCccceeeeeeCCCCceeeeeecC
Confidence 44799999998877899999999999999999875321111 111124578999999863 444444
Q ss_pred CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-c
Q 012712 281 DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-E 356 (458)
Q Consensus 281 ~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~ 356 (458)
++ .|.+||++.. ....+.+.+|... |.++.| .+.+ +
T Consensus 228 dd~~PviqlWDlR~a-------------------------------------ssP~k~~~~H~~G--ilslsW-c~~D~~ 267 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFA-------------------------------------SSPLKILEGHQRG--ILSLSW-CPQDPR 267 (1049)
T ss_pred CCCCceeEeeccccc-------------------------------------CCchhhhcccccc--eeeecc-CCCCch
Confidence 33 4999998863 3456777888886 999999 6655 8
Q ss_pred EEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccc
Q 012712 357 YVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 357 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~ 418 (458)
+|++++.|++|.+|+.++++.+..+......+..+.|+|... .++.++-||.|.|+.+.+..
T Consensus 268 lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 268 LLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999999999999999999988888999999999877 78888999999999998653
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.9e-25 Score=178.55 Aligned_cols=254 Identities=17% Similarity=0.238 Sum_probs=188.1
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceE---EeeeeeEeecCCCceEEEEEecCC-CEEEEecCCCe
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVL---RLGIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRR 84 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~ 84 (458)
.|.++|.|.-|..|.|||+.--..+ +..+.-++..... .-+.-..-.+|+..|.+++|+..- +.||+||.|.+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v---~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAV---LPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKT 267 (463)
T ss_pred CcceEEEeccCceeEEecccccccc---ccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCce
Confidence 3679999999999999998732211 1111111111100 001112235799999999998754 68999999999
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (458)
|++||+.++++...+ ..|...|.++.|+|. ....|++|+.|+++.+.|.+....... .-...+.|..++|.|...+
T Consensus 268 V~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSI-THHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred EEEEEcCCCCcceeh-hhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCc--eEEeccceEEEEecCCCce
Confidence 999999999998777 679999999999995 778999999999999999986443322 2235678999999999989
Q ss_pred EEEEecCCCeEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 165 VFYTCGEDGLVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.++++..||+|+-+|+|.. +++..+.. |..+|.++++++..+.++++++.|+.|++|++........
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v-- 411 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV-- 411 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEe----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc--
Confidence 9999999999999999987 55555554 6668999999998889999999999999999876542100
Q ss_pred CCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCC-cEEEEEccCC
Q 012712 244 FGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDE-FIYLFTQDMG 292 (458)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~-~i~i~~~~~~ 292 (458)
......-+...|.++.|+-. +++.|+.. .+++||+.+.
T Consensus 412 -----------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 412 -----------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred -----------ccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 00011123467778888754 45555544 5999999875
No 164
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.94 E-value=5.3e-22 Score=182.24 Aligned_cols=358 Identities=22% Similarity=0.353 Sum_probs=264.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccc-cccccccccccccccceEEeeeeeEeecCC-CceEEEEE-ecCCC-EEEEe
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQ-LSTRNFALRRRASEDLVLRLGIYAKLDKHR-GCVNTVSF-NTDGD-ILISG 79 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-s~~~~-~l~s~ 79 (458)
+.+++.+..++.++.|+.+.+|+...+. .. ..+.++. ..+..+.+ ++++. +++..
T Consensus 71 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (466)
T COG2319 71 IAFSPDGELLLSGSSDGTIKLWDLDNGEKLI---------------------KSLEGLHDSSVSKLALSSPDGNSILLAS 129 (466)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCceeE---------------------EEEeccCCCceeeEEEECCCcceEEecc
Confidence 3467888889999899999999999664 22 2344433 47777777 78887 55554
Q ss_pred cC-CCeEEEEECCC-cceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeeccccccceEEE
Q 012712 80 SD-DRRVILWDWKT-ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 80 ~~-d~~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~ 156 (458)
+. |+.+.+|+... ......+ ..|...|..++|+| ++..+++++. ++.+++|++........ +..|...+.++
T Consensus 130 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 204 (466)
T COG2319 130 SSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLST--LAGHTDPVSSL 204 (466)
T ss_pred CCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEe--eccCCCceEEE
Confidence 45 89999999987 5554555 78999999999999 9988888885 99999999988555544 66799999999
Q ss_pred EEcCCCCeEEEEecCCCeEEEEeCCCCCccce-eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL-FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
+|+|+++.++++++.|+.|++||...+..... +. + +.... ...|+|+ +..+++++.|+.+++|+.+.
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~--------~--~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS--------G--HSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC--------C--CCcce-eEeECCC-CCEEEEecCCCcEEEeeecC
Confidence 99999853556669999999998886655442 22 1 11122 2289998 47888999999999999987
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
.... .... ..|...+.++.|.|++..+++++ ++.+.+|+......
T Consensus 273 ~~~~-------------~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------- 318 (466)
T COG2319 273 SSSL-------------LRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL-------------------- 318 (466)
T ss_pred CCcE-------------EEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce--------------------
Confidence 6520 0111 44578899999999888877766 44689998776321
Q ss_pred CCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCcEEEEe-cCCCeEEEEEecCCeEEEEeecCCceeeEE
Q 012712 315 DHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCEYVVSG-SDCGRIFIWKKKGGELIRVIEADRHVVNCI 391 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 391 (458)
.... ..|.. .+..+.+ .+++..++.+ ..|+.+++|+.............. .+..+
T Consensus 319 ------------------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~ 376 (466)
T COG2319 319 ------------------LSSLTLKGHEG--PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSV 376 (466)
T ss_pred ------------------EEEeeecccCC--ceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEE
Confidence 1112 24444 3777887 6664555555 678999999998777333333222 28889
Q ss_pred EecCCCCeEEE-eecCCcEEEecCCccccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 392 EPHPHSTVLAS-SGIESDIKILTPNAADRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 392 ~~s~~~~~l~s-~~~d~~i~iw~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
.+++ ...+.. +..++.+.+|+............. ..+....+++++..+++++.++.+++|+..
T Consensus 377 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 377 SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEecc
Confidence 9988 544444 688999999999988776555544 789999999999999999999999999864
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=5.4e-24 Score=176.81 Aligned_cols=288 Identities=14% Similarity=0.135 Sum_probs=209.6
Q ss_pred CCcEEEEEccccccccccccccccccccceEEeeeeeEeecC--CCceEEEEEecCCC-EEEEecCCCeEEEEECCCcce
Q 012712 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH--RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERV 95 (458)
Q Consensus 19 d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~ 95 (458)
...++|||+..-+.... +..| ...+.++.|+.... .+++.+.|..+++|.-.....
T Consensus 11 gd~~kl~D~s~~~~~~~---------------------~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~ 69 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSE---------------------YVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP 69 (673)
T ss_pred CCceEEeecccccCccc---------------------cccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC
Confidence 44699999985444322 2222 23489999987653 233445678899997443211
Q ss_pred -eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712 96 -KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 96 -~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
+..........-.|++... ...++++++..+.|+|||++..... +.+++|...|+++.++... .+|++++..|.
T Consensus 70 ~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~kl~h--r~lkdh~stvt~v~YN~~D-eyiAsvs~gGd 144 (673)
T KOG4378|consen 70 EVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRAKLIH--RFLKDHQSTVTYVDYNNTD-EYIASVSDGGD 144 (673)
T ss_pred ccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHHHHHh--hhccCCcceeEEEEecCCc-ceeEEeccCCc
Confidence 1111111122344555444 5579999999999999999843333 3488999999999999888 68999999999
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
|.+..+.++.....+... ....+.-+.|+|....+|.+++.+|.|.+||+..... ..
T Consensus 145 iiih~~~t~~~tt~f~~~---------sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------------~~ 201 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTID---------SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------------IF 201 (673)
T ss_pred EEEEecccCccccceecC---------CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--------------cc
Confidence 999999998877776532 2334678899998667888899999999999987652 24
Q ss_pred ccccccccceeEEEeCCCCc-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 255 NLIGDEQVGITGLAFSDQSE-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
.....|..+...++|+|... +|++.+ |..|++||..... .
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------------------------------------s 243 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------------------------------------S 243 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------------------------------------c
Confidence 45667889999999999775 556655 5589999988632 2
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCCC
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPHS 397 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~ 397 (458)
...+.... +...++| +++|.+|+.|+..|.|..||+.. ..++.++..|...|++++|-|.-
T Consensus 244 ~~~l~y~~---Plstvaf-~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 244 TDRLTYSH---PLSTVAF-SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cceeeecC---Ccceeee-cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 22222111 2678898 99999999999999999999975 46889999999999999997653
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=173.97 Aligned_cols=265 Identities=20% Similarity=0.290 Sum_probs=190.7
Q ss_pred eEeecCCCceEEEEEecCC--CEEEEecCCCeEEEEECCC----------------cceeeeeccCCCcceeEEEEccCC
Q 012712 55 AKLDKHRGCVNTVSFNTDG--DILISGSDDRRVILWDWKT----------------ERVKLSFHSGHNDNVFQAKIMPFT 116 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~ 116 (458)
...-+|.+.|+.+.-++-+ .+.|+=+..|.|.||++.. .+++.++ .+|...=++++|||..
T Consensus 145 ~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 145 MKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc
Confidence 3445788889888888765 4666667889999999753 2345555 7899999999999953
Q ss_pred CCeEEEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
. ..|++|.--+.|++|...++... -...+.+|+..|..++|+|....+|++|+-||+|+|||+|.+.....+....
T Consensus 224 ~-g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA-- 300 (440)
T KOG0302|consen 224 T-GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA-- 300 (440)
T ss_pred c-cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec--
Confidence 3 35788888889999999887643 2344778999999999999988999999999999999999985444333211
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-- 273 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 273 (458)
+...|+.++|+.. ..+|++|+.||+++|||+|..+.. .+...+..|..+|+++.|+|..
T Consensus 301 ------h~sDVNVISWnr~-~~lLasG~DdGt~~iwDLR~~~~~------------~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 301 ------HNSDVNVISWNRR-EPLLASGGDDGTLSIWDLRQFKSG------------QPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred ------cCCceeeEEccCC-cceeeecCCCceEEEEEhhhccCC------------CcceeEEeccCCeeEEEeccccCc
Confidence 5668999999997 459999999999999999987632 2345667789999999999964
Q ss_pred cEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 274 ELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 274 ~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
.+.+++.+++|.+||+................ -...+.+.+.-|.....+..+.| ++
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~----------------------L~dlPpQLLFVHqGQke~KevhW-H~ 418 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEG----------------------LQDLPPQLLFVHQGQKEVKEVHW-HR 418 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccc----------------------hhcCCceeEEEecchhHhhhhee-cc
Confidence 34455557799999997643321111000000 00122333444444445788888 55
Q ss_pred C-CcEEEEecCCC
Q 012712 354 K-CEYVVSGSDCG 365 (458)
Q Consensus 354 ~-~~~l~~~~~dg 365 (458)
. -.+|++.+.||
T Consensus 419 QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 419 QIPGLLVSTAIDG 431 (440)
T ss_pred CCCCeEEEecccc
Confidence 4 34777777787
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.93 E-value=2.2e-24 Score=164.64 Aligned_cols=303 Identities=15% Similarity=0.121 Sum_probs=203.9
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
...+++|.+.|+++.|..+++ |.+|..-|.|++|++.+.+....+.-.|...|+.+.-.| + ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhhcCCCceEEEE
Confidence 456779999999999988765 889999999999999998887777446788999999988 5 678999999999999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-eEEEEeCC---------CCCccceeeecccCCCCcceee
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFDLR---------TGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd~~---------~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
++.....+.. |.-.++++.|.+.. +...+... ....++-+ .+...+.. ..+. +.....
T Consensus 83 ~ia~s~~i~i-----~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~-i~dd---~~~~Kl 150 (323)
T KOG0322|consen 83 TIAYSAFISI-----HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ-IADD---SERSKL 150 (323)
T ss_pred EccCcceEEE-----eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeE-ccCc---hhcccc
Confidence 9976554333 44445556555432 22221111 11111111 11111111 1110 011123
Q ss_pred cceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-
Q 012712 204 VNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (458)
Q Consensus 204 ~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 280 (458)
+.+.|..+.-+.+ -++++|.++|.+.+||+.++...-. +... .........|..++.++.|.+.-..=++++
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~--~~~~---~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ--LPQS---SKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec--cccc---cccccchhhccCcceeeeechhhcCCcCCCc
Confidence 3456655433222 3567788999999999998732211 1110 011223445788999999987544444444
Q ss_pred CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~ 360 (458)
++.+..|+++......+++ ....+ .+.+ +..+.. -||++.+|+
T Consensus 226 ~dkl~~~Sl~~s~gslq~~--------------------------------~e~~l-knpG---v~gvrI-RpD~KIlAT 268 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQIR--------------------------------KEITL-KNPG---VSGVRI-RPDGKILAT 268 (323)
T ss_pred cccceeeeeccccCccccc--------------------------------ceEEe-cCCC---ccceEE-ccCCcEEee
Confidence 5678888887532211110 11111 1222 666776 999999999
Q ss_pred ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 361 GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
++.|++||+|+.++..++..++-|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus 269 AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 269 AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999999999986
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.4e-24 Score=182.83 Aligned_cols=304 Identities=16% Similarity=0.192 Sum_probs=217.3
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC--CEEEEec
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG--DILISGS 80 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~ 80 (458)
.++-.|.|..|++|+.||+||||.+.||.++.+ +. -.+.|.|++|+|.+ ..||++-
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~~-~d~~I~~vaw~P~~~~~vLAvA~ 462 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------VQ-FDSEIRSVAWNPLSDLCVLAVAV 462 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------Ee-ecceeEEEEecCCCCceeEEEEe
Confidence 345678899999999999999999999999855 22 34589999999976 4566555
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEE----cCCCcEEEeeccccccee--eeeccccccceE
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTC----AADGQVRHAQILERGGVE--TKLLGKHQGRAH 154 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~----~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~ 154 (458)
.+. +.|-+..-|..+... . ....|+++ ..++.+..|.-...+... ....-.|...|.
T Consensus 463 ~~~-~~ivnp~~G~~~e~~---~-------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~ 525 (733)
T KOG0650|consen 463 GEC-VLIVNPIFGDRLEVG---P-------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR 525 (733)
T ss_pred cCc-eEEeCccccchhhhc---c-------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc
Confidence 444 666665444221111 0 11111111 224567778654322211 122445889999
Q ss_pred EEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 155 KLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.+.|+..| .+|++...+ ..|.|.++........|.. ..+.+.++.|+|. ..+|++++. ..|++|
T Consensus 526 ~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs-~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 526 QVTWHRKG-DYLATVMPDSGNKSVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPS-KPYLFVATQ-RSVRIY 592 (733)
T ss_pred eeeeecCC-ceEEEeccCCCcceEEEEecccccccCchhh----------cCCceeEEEecCC-CceEEEEec-cceEEE
Confidence 99999999 567766543 4688999877665544432 3446899999998 556666665 579999
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
|+...++.+. +.. ....|..++.+|.|.-|+.++ +..+..||+.-.
T Consensus 593 dL~kqelvKk--------------L~t-g~kwiS~msihp~GDnli~gs~d~k~~WfDldls------------------ 639 (733)
T KOG0650|consen 593 DLSKQELVKK--------------LLT-GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS------------------ 639 (733)
T ss_pred ehhHHHHHHH--------------Hhc-CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC------------------
Confidence 9988664332 222 356799999999998888888 557888998764
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec------C---CeEEEEe
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK------G---GELIRVI 381 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~------~---~~~~~~~ 381 (458)
.++.+.+.-|... +++++| ++.-.++++|+.||++.||.-. . --++..+
T Consensus 640 -------------------skPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 640 -------------------SKPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred -------------------cchhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 3456777778875 899998 9999999999999999998532 1 1356778
Q ss_pred ecCCce----eeEEEecCCCCeEEEeecCCcEEEec
Q 012712 382 EADRHV----VNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 382 ~~~~~~----v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++|... |..+.|+|...+|++++.||+|++|.
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 888765 88999999999999999999999983
No 169
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=1.8e-23 Score=164.68 Aligned_cols=323 Identities=15% Similarity=0.157 Sum_probs=220.6
Q ss_pred eeccCCCcceeEEEEccCC---CCeEEEEEcCCCcEEEeecccccce---eeeeccccccceEEEEEcCC---CCeEEEE
Q 012712 98 SFHSGHNDNVFQAKIMPFT---DDRSIVTCAADGQVRHAQILERGGV---ETKLLGKHQGRAHKLAIEPG---SPHVFYT 168 (458)
Q Consensus 98 ~~~~~~~~~i~~~~~~~~~---~~~~l~s~~~dg~i~vw~~~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~~l~s 168 (458)
.+...|..+|..++|.++. +...+++++. ..+.+|+......+ +...-..|......++|+-+ +.-++++
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 3446788999999998642 3345666665 57888887655422 22112236666777787643 3357888
Q ss_pred ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 169 CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 169 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
++.-|.|++.|+.+++....+.. +...|+.+.++|+.++++++++.|..|++|++++......
T Consensus 111 ~G~~GvIrVid~~~~~~~~~~~g----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~V------- 173 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQCSKNYRG----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAV------- 173 (385)
T ss_pred ecceeEEEEEecchhhhccceec----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEE-------
Confidence 88999999999999988877764 5568999999999889999999999999999998764321
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
..-..+|...|.++.|+++|.+|++++.| ++++|++........+... ..+.++........ ..
T Consensus 174 -----fGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s--------~~~~~~~t~~pfpt--~~ 238 (385)
T KOG1034|consen 174 -----FGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS--------ITYSPNKTTRPFPT--PK 238 (385)
T ss_pred -----ecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh--------cccCCCCccCcCCc--cc
Confidence 22345788999999999999999999855 8999999854322221111 00111110000000 00
Q ss_pred ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec-CC-------------eEEEEeecCCceeeEEE-
Q 012712 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK-GG-------------ELIRVIEADRHVVNCIE- 392 (458)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~-------------~~~~~~~~~~~~v~~~~- 392 (458)
...+...+-.-|.+. |-|+.|| |+++++=+-++.|..|... -. ..+.++.-....|.-+.
T Consensus 239 ~~fp~fst~diHrny--VDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNY--VDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccccccccch--HHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 000111122345553 6677774 6899998889999999861 11 11223333334455554
Q ss_pred -ecCCCCeEEEeecCCcEEEecCCccccccc---ccc--cccEEEEEEecCCcEEEeeecCCceEEEEEecC
Q 012712 393 -PHPHSTVLASSGIESDIKILTPNAADRATL---PTN--IEQVCFSIYSADYWWSKSQNFSCSILLFEWLVK 458 (458)
Q Consensus 393 -~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~---~~~--~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 458 (458)
|.|-+++||.|...|.|.+||++..+.... ..+ ...|...+||.||..|+....|++|.=||++.+
T Consensus 314 ~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~~ 385 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVSA 385 (385)
T ss_pred eecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeecC
Confidence 557789999999999999999998766322 222 234999999999999999999999999998753
No 170
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.2e-23 Score=174.85 Aligned_cols=215 Identities=18% Similarity=0.263 Sum_probs=181.8
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
..++++|+..+.|+|||+. .+++. +.+++|+..|+++.++....+||+++..|.|.|..
T Consensus 91 S~y~~sgG~~~~Vkiwdl~-~kl~h--------------------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLR-AKLIH--------------------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred ceeeeccCcCceeeehhhH-HHHHh--------------------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence 4789999999999999999 44442 35899999999999999999999999999999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEe
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
+.++.....+..+....|.-+.|+|+ ...+|.+++.+|.|.+||+....... .....|..+...|+|+|.++.+|++.
T Consensus 150 ~~t~~~tt~f~~~sgqsvRll~ys~s-kr~lL~~asd~G~VtlwDv~g~sp~~-~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 150 TKTKQKTTTFTIDSGQSVRLLRYSPS-KRFLLSIASDKGAVTLWDVQGMSPIF-HASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred cccCccccceecCCCCeEEEeecccc-cceeeEeeccCCeEEEEeccCCCccc-chhhhccCCcCcceecCCccceEEEe
Confidence 99988777664444566779999993 34567789999999999997766554 33678999999999999998999999
Q ss_pred cCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCC
Q 012712 170 GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPAD 249 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (458)
+.|..|.+||.+..+....+. ...+...++|.++ |.+|+.|...|.|..||++..+
T Consensus 228 G~Dkki~~yD~~s~~s~~~l~-----------y~~Plstvaf~~~-G~~L~aG~s~G~~i~YD~R~~k------------ 283 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQASTDRLT-----------YSHPLSTVAFSEC-GTYLCAGNSKGELIAYDMRSTK------------ 283 (673)
T ss_pred cccceEEEeecccccccceee-----------ecCCcceeeecCC-ceEEEeecCCceEEEEecccCC------------
Confidence 999999999999877766665 4447899999997 7999999999999999999875
Q ss_pred CcCCCccccccccceeEEEeCCCC
Q 012712 250 YFCPPNLIGDEQVGITGLAFSDQS 273 (458)
Q Consensus 250 ~~~~~~~~~~~~~~i~~~~~~~~~ 273 (458)
.|......|...|++++|-|.-
T Consensus 284 --~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 --APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --CCceEeeecccceeEEEeeecc
Confidence 4556677788899999998865
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=179.32 Aligned_cols=275 Identities=12% Similarity=0.184 Sum_probs=209.0
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
.|..++|-|||..|+.+..+ .+.+||..+|..+..+ ++|...|++++|+. ||+.+++|+.|..|.+|+-.-...+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEcc--CCceeccCCCceeEEEeccccccee-
Confidence 89999999999888776554 6999999999988877 89999999999999 9999999999999999986433222
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
-..|++.|.|+.|+|-. +.|++++-. ..-+|........+ .+ ....+.+.+|..| |.+++.|
T Consensus 89 ---kYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K-~k-----------ss~R~~~CsWtnD-GqylalG 150 (1081)
T KOG1538|consen 89 ---KYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSK-HK-----------SSSRIICCSWTND-GQYLALG 150 (1081)
T ss_pred ---eeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHh-hh-----------hheeEEEeeecCC-CcEEEEe
Confidence 23599999999999988 677887753 46688766554322 11 4446899999998 7999999
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-----cEEEEecCC-cEEEEEccCCCCCC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-----ELLVSYNDE-FIYLFTQDMGLGPN 296 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~~-~i~i~~~~~~~~~~ 296 (458)
-.+|+|.+-+-...+. .......+.+.+|.+++|+|.. ..++...-+ ++..|.+...
T Consensus 151 ~~nGTIsiRNk~gEek-------------~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---- 213 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEK-------------VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---- 213 (1081)
T ss_pred ccCceEEeecCCCCcc-------------eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----
Confidence 9999999875433221 1123344567899999999974 245555533 4555555431
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE 376 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 376 (458)
.+..-+.-.- ...++.+ -++|.|+..|+.|+.+.+|-. .|-
T Consensus 214 -----------------------------------~Igk~r~L~F--dP~CisY-f~NGEy~LiGGsdk~L~~fTR-~Gv 254 (1081)
T KOG1538|consen 214 -----------------------------------QIGKDRALNF--DPCCISY-FTNGEYILLGGSDKQLSLFTR-DGV 254 (1081)
T ss_pred -----------------------------------eecccccCCC--Cchhhee-ccCCcEEEEccCCCceEEEee-cCe
Confidence 1110000000 1346666 799999999999999999975 677
Q ss_pred EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 377 LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
.+.++......|+.++..|++++++.|+.||+|-.|++..
T Consensus 255 rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 255 RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 8888877788999999999999999999999999998753
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=6.7e-23 Score=166.08 Aligned_cols=299 Identities=15% Similarity=0.176 Sum_probs=207.1
Q ss_pred CCceEEEEEecCCC-EEEEecCCCeEEEEECCCccee--------eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEE
Q 012712 61 RGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVK--------LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVR 131 (458)
Q Consensus 61 ~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~ 131 (458)
..+|.++.|.++.. .||||+.|..|++|-+..++.- ...+..|...|+++.|+| +|++|++|+.+|.|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceEE
Confidence 46899999998775 9999999999999988654321 223478999999999999 999999999999999
Q ss_pred Eeecc--------c------ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 132 HAQIL--------E------RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 132 vw~~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
+|... + ...+..+.+.+|...|..++|+|++ ..+++++.|..+++||+..+.....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~d------ 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDD------ 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccc------
Confidence 99876 2 1123445577899999999999999 7899999999999999999988776653
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
+...+..++|.|- .+++++-+.|...+.+.+...+. +.++.. ...++
T Consensus 164 ----h~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~-------------------------~~~~~~---~~m~~ 210 (434)
T KOG1009|consen 164 ----HEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQV-------------------------IKRHGL---DIMPA 210 (434)
T ss_pred ----cccccceeecchh-hhhhhhhccCcccceeeeeeeee-------------------------eeeeee---eEeee
Confidence 4457899999997 68999999998777777665432 111111 00011
Q ss_pred Eec-CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 278 SYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 278 ~~~-~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
-.. .+ ..++|.-++ .......++| +|
T Consensus 211 ~~~~~~e~~s~rLfhDeT-------------------------------------------------lksFFrRlsf-TP 240 (434)
T KOG1009|consen 211 KAFNEREGKSTRLFHDET-------------------------------------------------LKSFFRRLSF-TP 240 (434)
T ss_pred cccCCCCcceeeeeecCc-------------------------------------------------hhhhhhhccc-CC
Confidence 000 11 123332221 1123456666 88
Q ss_pred CCcEEEEecC----C-----CeEEEEEecC-CeEEEEeecCCceeeEEEecC------------------CCCeEEEeec
Q 012712 354 KCEYVVSGSD----C-----GRIFIWKKKG-GELIRVIEADRHVVNCIEPHP------------------HSTVLASSGI 405 (458)
Q Consensus 354 ~~~~l~~~~~----d-----g~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~------------------~~~~l~s~~~ 405 (458)
||.+|++.+. . +..++|+-.. .++...+.+...+...+.|+| -+-.+|.++
T Consensus 241 dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt- 319 (434)
T KOG1009|consen 241 DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT- 319 (434)
T ss_pred CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence 8888776431 1 2334444322 233444444444444454443 223445554
Q ss_pred CCcEEEecCCccccccc--ccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712 406 ESDIKILTPNAADRATL--PTNIEQVCFSIYSADYWWSKSQNFSCSILL 452 (458)
Q Consensus 406 d~~i~iw~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~ 452 (458)
-+.+.+||.+..++... .-|-..++.++|++||..|+..+.||-.-+
T Consensus 320 ~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 56899999998766533 347778999999999999999999996544
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-22 Score=175.77 Aligned_cols=384 Identities=14% Similarity=0.149 Sum_probs=248.7
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
.+++.+...+..- +-.+.+|+..++..... ....-..|...+++.++||+++++|+|..||.
T Consensus 167 ~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~-----------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGr 228 (792)
T KOG1963|consen 167 VDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS-----------------SRDITVHHTFNITCVALSPNERYLAAGDSDGR 228 (792)
T ss_pred EEcCCceEEEEEE-eeeEEEEEecccceeec-----------------cchhhhhhcccceeEEeccccceEEEeccCCc
Confidence 3455555544444 44577888886441100 01112347777999999999999999999999
Q ss_pred EEEEECCC---cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 85 VILWDWKT---ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 85 i~iwd~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
|.+|.--. .....+.+.=|..+|.+++|++ +|.+|++|+..|.+.+|.+.+++.. .++.-.++|..+.++||
T Consensus 229 I~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~--~G~~LlSGG~E~VLv~Wq~~T~~kq---fLPRLgs~I~~i~vS~d 303 (792)
T KOG1963|consen 229 ILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS--DGAYLLSGGREGVLVLWQLETGKKQ---FLPRLGSPILHIVVSPD 303 (792)
T ss_pred EEEEeccccccccccceEEEecccccceeEEec--CCceEeecccceEEEEEeecCCCcc---cccccCCeeEEEEEcCC
Confidence 99996432 2223334456889999999999 9999999999999999999988732 26667889999999999
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCC-cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRR-NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
+ .+.+....|..|.+....+.+....+......... ......-.+.++++|. .+.++-.+..|.|.+||+-+.+...
T Consensus 304 s-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 304 S-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred C-CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceee
Confidence 9 56677778999999987665544444322221000 0012334577889995 6788888999999999998877654
Q ss_pred CccCCCCCCCcCCCcccc---ccccceeEEEeCCCCcEEEEec---------CC--cEEEEEccCCCCCCCCCCCCcccc
Q 012712 241 STDFGQPADYFCPPNLIG---DEQVGITGLAFSDQSELLVSYN---------DE--FIYLFTQDMGLGPNPPPSSPVSTR 306 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~---------~~--~i~i~~~~~~~~~~~~~~~~~~~~ 306 (458)
.+.... ..... .+...++.++.+..|.++++.. ++ .+++|..........
T Consensus 382 ~~~v~~-------~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~--------- 445 (792)
T KOG1963|consen 382 KLQVCD-------ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI--------- 445 (792)
T ss_pred eEEEEe-------ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE---------
Confidence 432211 11111 2345678888888899998763 22 378887665322111
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCC----------
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGG---------- 375 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~---------- 375 (458)
-.......|... +...++..+... ..++++.||.+++|-+.+.
T Consensus 446 ------------------------L~T~I~~PH~~~--~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 446 ------------------------LNTKINNPHGNA--FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred ------------------------EEEEEecCCCce--eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce
Confidence 112333456665 333333344433 8899999999999988432
Q ss_pred eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc-cccccccccc-ccEEEEEEecCC--cEEEeeecCCceE
Q 012712 376 ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA-ADRATLPTNI-EQVCFSIYSADY--WWSKSQNFSCSIL 451 (458)
Q Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~-~~v~~~~~s~d~--~~l~s~~~d~~i~ 451 (458)
.+...-.-|..++++++|+.||..|+ ++.|++|.+||..+ .++....+.. .++..+.|.... ...+.......+.
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 578 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLS 578 (792)
T ss_pred EEeeeeccccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEe
Confidence 22222223778899999999997665 56789999999998 4443332221 223333333322 1222333455677
Q ss_pred EEEEe
Q 012712 452 LFEWL 456 (458)
Q Consensus 452 ~w~~~ 456 (458)
+|+.+
T Consensus 579 ~WNll 583 (792)
T KOG1963|consen 579 VWNLL 583 (792)
T ss_pred hHhhh
Confidence 77754
No 174
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=4.1e-23 Score=157.80 Aligned_cols=301 Identities=13% Similarity=0.138 Sum_probs=202.9
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEe
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFD 179 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd 179 (458)
.+|.+.++++.|-. ..+|.++...|.+++|++.+.+.... +. .+...|+.+.--|++ .+.+-+.|+.+.+|+
T Consensus 11 Rp~~~~v~s~~fqa---~~rL~sg~~~G~V~~w~lqt~r~~~~--~r~~g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQA---NERLMSGLSVGIVKMWVLQTERDLPL--IRLFGRLFITNLQSIPND--SLDTQGRDPLLILWT 83 (323)
T ss_pred ccccchheehhhcc---chhhhcccccceEEEEEeecCccchh--hhhhccceeeceeecCCc--chhhcCCCceEEEEE
Confidence 58899999999985 45699999999999999998877665 44 577889999999976 478999999999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC-eEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
+.-+..+.. +...++++.|.+. -+...+... ..-.|+-+..........+.+.....+.....
T Consensus 84 ia~s~~i~i-------------~Si~~nslgFCrf---Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~ 147 (323)
T KOG0322|consen 84 IAYSAFISI-------------HSIVVNSLGFCRF---SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER 147 (323)
T ss_pred ccCcceEEE-------------eeeeccccccccc---eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence 987654432 2234566666553 122222221 22233333222222222222222222222223
Q ss_pred ccccceeEEEeCCC-C-c-EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712 259 DEQVGITGLAFSDQ-S-E-LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (458)
Q Consensus 259 ~~~~~i~~~~~~~~-~-~-~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
...+.+.+..+..+ + + ++++|. .+.+.+||+.++.....++. ..+...
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~----------------------------~~kv~~ 199 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ----------------------------SSKVES 199 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc----------------------------cccccc
Confidence 33466777665432 3 3 344555 45799999998643333221 022334
Q ss_pred eecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC--eE--EEEeecCCceeeEEEecCCCCeEEEeecCCcEE
Q 012712 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG--EL--IRVIEADRHVVNCIEPHPHSTVLASSGIESDIK 410 (458)
Q Consensus 335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~ 410 (458)
....|..+ +.++.| .+.-..=++|+.+..+..|+++.. .+ -.++.-..-.|..+.+-||++.+||++.|+.||
T Consensus 200 ~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiR 276 (323)
T KOG0322|consen 200 PNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIR 276 (323)
T ss_pred chhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEE
Confidence 44556654 888888 666556677888888999988643 21 122222233588899999999999999999999
Q ss_pred EecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 411 ILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 411 iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
||+..+...+ .+..|...|.+++|+||...+|.++.|++|-+|+.
T Consensus 277 Vyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999998776 66788899999999999999999999999999985
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=8.4e-24 Score=193.02 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=195.3
Q ss_pred CCceEEEEEecCCCE----EEEecCCCeEEEEECCCc---c---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 61 RGCVNTVSFNTDGDI----LISGSDDRRVILWDWKTE---R---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~----l~s~~~d~~i~iwd~~~~---~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
...-+.++|.+.|.. ||.|..||.|.+||...- . .+.+ ...|.+.|..+.|+++ .+++||+|+.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-~~~h~G~V~gLDfN~~-q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-KSKHTGPVLGLDFNPF-QGNLLASGADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-hcccCCceeeeecccc-CCceeeccCCCCcE
Confidence 356778999987755 888999999999998652 1 2233 3689999999999994 55699999999999
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
.|||+...+......-....+.|.+++|+..-.++|++++.+|.+.|||++..+.+-.+.... ....+..++
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~--------~~~~~S~l~ 213 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP--------GRMHCSVLA 213 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC--------Cccceeeee
Confidence 999998866544322223567899999999877899999999999999999887665554322 223578999
Q ss_pred ECCCCCcEEEEecCCC---eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CCcEE
Q 012712 211 IDPRNANLFAVAGSDE---YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIY 285 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~ 285 (458)
|+|++...+++++.|. .|.+||+|.-. .+.....+|...|.++.|++.+ ++|++++ |+.|.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccC--------------CchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 9999888888888764 58999998754 3455667899999999999987 6777776 66899
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC 364 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~d 364 (458)
+|+.++++ .+..+....+ ++..+.| .|..- .+++++-|
T Consensus 280 ~wN~~tgE--------------------------------------vl~~~p~~~n--W~fdv~w-~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 280 CWNPNTGE--------------------------------------VLGELPAQGN--WCFDVQW-CPRNPSVMAAASFD 318 (1049)
T ss_pred EecCCCce--------------------------------------EeeecCCCCc--ceeeeee-cCCCcchhhhheec
Confidence 99999853 3344444333 4888998 77665 78889999
Q ss_pred CeEEEEEecCCe
Q 012712 365 GRIFIWKKKGGE 376 (458)
Q Consensus 365 g~i~iwd~~~~~ 376 (458)
|.|.||.+....
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987553
No 176
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.91 E-value=4.1e-23 Score=162.90 Aligned_cols=302 Identities=13% Similarity=0.138 Sum_probs=215.1
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEE-EcCCCcEEEeecccccceeee
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVT-CAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s-~~~dg~i~vw~~~~~~~~~~~ 144 (458)
-.+|||+|+++|+++.- .+.|-|.++-+..+.+ ..-..|..+.|.. |..+++. ...++.|.+|++...+....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ck- 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCK- 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEE-
Confidence 36799999999999875 7888888887765554 2346788899998 8777654 55688999999988876655
Q ss_pred eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 145 LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 145 ~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
+.....++.+++|+|+|+++|.+...+-.|.+|.+.+.+....-. ....+..++|+|| +++.+.++.
T Consensus 87 -Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-----------pK~~~kg~~f~~d-g~f~ai~sR 153 (447)
T KOG4497|consen 87 -IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-----------PKTNVKGYAFHPD-GQFCAILSR 153 (447)
T ss_pred -eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-----------cccCceeEEECCC-Cceeeeeec
Confidence 777788999999999998899999999999999998876543221 2224688999998 677777664
Q ss_pred CCeEEEEecC---CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---CcEEEEEccCCCCCCCC
Q 012712 225 DEYTRLYDIR---KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMGLGPNPP 298 (458)
Q Consensus 225 dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~i~i~~~~~~~~~~~~ 298 (458)
-.....+.+. .-.+++. ..-..-..+.+.|+|||..||.-.. -.|+.|....
T Consensus 154 rDCkdyv~i~~c~~W~ll~~---------------f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l------- 211 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKE---------------FKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL------- 211 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHh---------------cCCCcccccCceECCCCcEEEEecchhhheeeeeeecc-------
Confidence 3211111111 1111111 1112345678999999998886442 1344443322
Q ss_pred CCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE
Q 012712 299 PSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI 378 (458)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 378 (458)
.+..++| +|.+++|+.|+.|+.+|+.+--+.+..
T Consensus 212 ---------------------------------------------G~k~v~w-sP~~qflavGsyD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 212 ---------------------------------------------GLKFVEW-SPCNQFLAVGSYDQMLRVLNHFTWKPF 245 (447)
T ss_pred ---------------------------------------------ceeEEEe-ccccceEEeeccchhhhhhceeeeeeh
Confidence 2777888 999999999999999988765221110
Q ss_pred ------------------------------------------------------------EEeec------CCceeeEEE
Q 012712 379 ------------------------------------------------------------RVIEA------DRHVVNCIE 392 (458)
Q Consensus 379 ------------------------------------------------------------~~~~~------~~~~v~~~~ 392 (458)
..++. ..-.+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 01110 112366789
Q ss_pred ecCCCCeEEEeec--CCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 393 PHPHSTVLASSGI--ESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 393 ~s~~~~~l~s~~~--d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
|++|..+++|-.+ -+.+.+||+...+...+.....+|.+..|.|....|+.+.....+++|-
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 9999999998754 4689999999998888888888999999999998777766666677773
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-23 Score=177.32 Aligned_cols=306 Identities=14% Similarity=0.209 Sum_probs=212.3
Q ss_pred CeEEEeeCCCcEEEE--EccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEE
Q 012712 11 KRARTSVDKALVDVW--LRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iw 88 (458)
...++..+|...++| ++. +-.+...+..+........+.+.+..++..|...|+.++|.|....|++++.|++|++|
T Consensus 243 ~~~~g~d~~l~~~l~~~tla-~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLA-GLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CccccCchHHHHhhcccchh-cccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 346666777888888 554 33333322211111111344566666899999999999999999999999999999999
Q ss_pred ECCC--------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--------eeeeeccccccc
Q 012712 89 DWKT--------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--------VETKLLGKHQGR 152 (458)
Q Consensus 89 d~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--------~~~~~~~~~~~~ 152 (458)
+++. -+++.++ .+|.++|.|+++.+ ++..+++|+-||+|+.|++..... .....+.+|++.
T Consensus 322 nLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 322 NLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred hhcccCCccccceeeeEEE-ecccCceEEEEecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 9932 2456666 79999999999999 999999999999999997753221 222347899999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
++.+++++.. ..|++++.||+++.|+.....+ ..+.... ..+...++.+-.....+.++ +.....++
T Consensus 399 vw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~--------e~g~Plsvd~~ss~~a~~~~---s~~~~~~~ 465 (577)
T KOG0642|consen 399 VWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPK--------EHGYPLSVDRTSSRPAHSLA---SFRFGYTS 465 (577)
T ss_pred eeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCcc--------ccCCcceEeeccchhHhhhh---hccccccc
Confidence 9999999987 6799999999999999876655 2232211 11223455554331122222 22333333
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
+...+.. ..+.+.+. ..
T Consensus 466 ~~~~ev~-------------------------s~~~~~~s-----------------~~--------------------- 482 (577)
T KOG0642|consen 466 IDDMEVV-------------------------SDLLIFES-----------------SA--------------------- 482 (577)
T ss_pred chhhhhh-------------------------hheeeccc-----------------cC---------------------
Confidence 3332211 00111110 00
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEE
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 392 (458)
..+......+..+.. .|.+.+.+++..|+.|+++|..+++++.....|...+++++
T Consensus 483 -----------------------~~~~~~~~~in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 483 -----------------------SPGPRRYPQINKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred -----------------------CCcccccCccceEEe-cCCCCeeEecccCCceecccccccccchheeeccceeccee
Confidence 000000012455555 88889999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 393 PHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 393 ~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+.|+|.+|++++.|+.+++|.+....+.
T Consensus 539 i~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 539 IDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecCCCceEEeecCCceeehhhccchhee
Confidence 9999999999999999999999766543
No 178
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.91 E-value=4e-22 Score=157.39 Aligned_cols=373 Identities=12% Similarity=0.101 Sum_probs=238.8
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEE-ecCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILIS-GSDD 82 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d 82 (458)
+.|||+|+++|++++- .+.|-|.+|-++++- + .--+.|.-+.|..|..++++ ...|
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql---------------------f-~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL---------------------F-LCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHH---------------------H-HHHHHhhheeeeccceeeeeeeecc
Confidence 4689999999999955 777999997665521 1 11345777889888866655 4668
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
+.|.+|++...+-...+ .....++.+++|+| ||+. |.+...+-.|.+|.+.+.+... ++.....+..++|+|+
T Consensus 71 ~~vqvwsl~Qpew~ckI-deg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~---~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKI-DEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL---LPHPKTNVKGYAFHPD 144 (447)
T ss_pred ceEEEEEeecceeEEEe-ccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE---ecccccCceeEEECCC
Confidence 89999999988877777 45678899999999 9955 5566679999999998877654 3333455688999999
Q ss_pred CCeEEEEecCCCeEEEEeCC---CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--CCeEEEEecCCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--DEYTRLYDIRKY 236 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~i~d~~~~ 236 (458)
| ++.+.++..-....+++. .-.....+.. .....+.+.|+|| ++.+++=.. +-.|..|..
T Consensus 145 g-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~----------dT~DltgieWsPd-g~~laVwd~~Leykv~aYe~--- 209 (447)
T KOG4497|consen 145 G-QFCAILSRRDCKDYVQISSCKAWILLKEFKL----------DTIDLTGIEWSPD-GNWLAVWDNVLEYKVYAYER--- 209 (447)
T ss_pred C-ceeeeeecccHHHHHHHHhhHHHHHHHhcCC----------CcccccCceECCC-CcEEEEecchhhheeeeeee---
Confidence 9 455544432111111111 1111222221 2335678999998 567664221 112222211
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCC------CC--------
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPP------SS-------- 301 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~------~~-------- 301 (458)
.-.+..++|+|.+++|+.|+.| .+++.+--+-+...++- .+
T Consensus 210 ------------------------~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 210 ------------------------GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred ------------------------ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 2467889999999999999954 67665543332221111 00
Q ss_pred ---CccccccccccCCCCccccCCCCC-----Ccc------cccCceeecCccceeeeeEEEEecCCCcEEEEecCC--C
Q 012712 302 ---PVSTRSEASEMGSDHTSAASPSTA-----NTD------VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC--G 365 (458)
Q Consensus 302 ---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d--g 365 (458)
+.........+.|........... ... ..++...+.... ..+--++| ++|..|+++-.+. +
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk--~g~g~laf-s~Ds~y~aTrnd~~Pn 342 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK--CGAGKLAF-SCDSTYAATRNDKYPN 342 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc--cccceeee-cCCceEEeeecCCCCc
Confidence 000000001122221111111100 000 011111111111 23667788 9999999987654 6
Q ss_pred eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeee
Q 012712 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 445 (458)
.+.+||+...+....+. ...+|....|+|....|+.+.....+++|.+........+...-.|..+.|.-+|..++-.+
T Consensus 343 alW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred eEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEc
Confidence 89999997766655553 45679999999999999888878889999999877777777778899999999999998888
Q ss_pred cCC
Q 012712 446 FSC 448 (458)
Q Consensus 446 ~d~ 448 (458)
.|-
T Consensus 422 kDa 424 (447)
T KOG4497|consen 422 KDA 424 (447)
T ss_pred CCc
Confidence 885
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.91 E-value=7.9e-20 Score=167.81 Aligned_cols=330 Identities=22% Similarity=0.357 Sum_probs=240.3
Q ss_pred EeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-eeeeeccCCCcceeEEEE-ccCCCCe-EEEEEcC-CCcEE
Q 012712 56 KLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSFHSGHNDNVFQAKI-MPFTDDR-SIVTCAA-DGQVR 131 (458)
Q Consensus 56 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~-~~~~~~~-~l~s~~~-dg~i~ 131 (458)
.+..|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+...+...+..+.+ .+ ++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP--DGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC--CcceEEeccCCCCccEE
Confidence 467899999999999999999999999999999998886 555552223346777777 66 777 5555444 99999
Q ss_pred Eeeccc-ccceeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 132 HAQILE-RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 132 vw~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
+|+... ...... +..|...+..++|+|++. .+++++. |+.+++|++..+.....+.. +...+.++
T Consensus 138 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~ 204 (466)
T COG2319 138 LWDLSTPGKLIRT--LEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAG----------HTDPVSSL 204 (466)
T ss_pred EEEecCCCeEEEE--EecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeecc----------CCCceEEE
Confidence 999977 333333 778999999999999994 6777775 99999999998666555543 44579999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
+|+|++...+++++.|+.|++||........ .....|.... ...|+|++.++++++ ++.+++|+
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~ 269 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--------------STLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWD 269 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEe--------------eecCCCCcce-eEeECCCCCEEEEecCCCcEEEee
Confidence 9999843356666999999999877443211 0223333333 228999997777666 55899999
Q ss_pred ccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEE
Q 012712 289 QDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIF 368 (458)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~ 368 (458)
...... ....+.+|.. .+.++.| .|++..+++++.|+.+.
T Consensus 270 ~~~~~~-------------------------------------~~~~~~~~~~--~v~~~~~-~~~~~~~~~~~~d~~~~ 309 (466)
T COG2319 270 LRSSSS-------------------------------------LLRTLSGHSS--SVLSVAF-SPDGKLLASGSSDGTVR 309 (466)
T ss_pred ecCCCc-------------------------------------EEEEEecCCc--cEEEEEE-CCCCCEEEEeeCCCcEE
Confidence 886321 1222244433 4788888 99888888898899999
Q ss_pred EEEecCCeEEEEee--cCCceeeEEEecCCCCeEEEe-ecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEe-e
Q 012712 369 IWKKKGGELIRVIE--ADRHVVNCIEPHPHSTVLASS-GIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS-Q 444 (458)
Q Consensus 369 iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~ 444 (458)
+|+........... .|...+..+.|.+++..++.+ ..|+.+.+|+...............+..+.+++ ...... +
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred EEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEe
Confidence 99998887776665 788789999994343555555 678999999998876222222222388999999 544444 6
Q ss_pred ecCCceEEEEEe
Q 012712 445 NFSCSILLFEWL 456 (458)
Q Consensus 445 ~~d~~i~~w~~~ 456 (458)
..++.+.+|+..
T Consensus 389 ~~~~~~~~~~~~ 400 (466)
T COG2319 389 STDGTVRLWDLS 400 (466)
T ss_pred cCCCceEEEecc
Confidence 899999999864
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.7e-21 Score=150.97 Aligned_cols=275 Identities=16% Similarity=0.228 Sum_probs=192.5
Q ss_pred CCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCC-------CeEEEEeCCCCCccceeeecccCCCC
Q 012712 127 DGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-------GLVQHFDLRTGAATELFTCRPIDDRR 198 (458)
Q Consensus 127 dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~ 198 (458)
|+.|.+.++.... .+....+..|.+.|..++-+|-.+.+|+++..+ -.+.+|.+.................-
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5777777765543 334445777889999999999987888877553 24679988654322111100000000
Q ss_pred cceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC--CCcEE
Q 012712 199 NYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD--QSELL 276 (458)
Q Consensus 199 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l 276 (458)
.....+.+.|+.|.|+ +..+++.. |..|.+|++........ .+ +.....++....++-+|+| +|..+
T Consensus 119 dteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~va-ev--------~ss~s~e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVA-EV--------LSSESAEMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred CHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchhe-ee--------cccccccccceecccccCCCCccceE
Confidence 0113447899999996 66777665 78899999987654211 00 0111122455678889998 78899
Q ss_pred EEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712 277 VSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (458)
Q Consensus 277 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~ 356 (458)
++.++.++..||+++...... .-..|.. .+..+.| .|+.+
T Consensus 188 ~tt~d~tl~~~D~RT~~~~~s-------------------------------------I~dAHgq--~vrdlDf-Npnkq 227 (370)
T KOG1007|consen 188 ATTSDSTLQFWDLRTMKKNNS-------------------------------------IEDAHGQ--RVRDLDF-NPNKQ 227 (370)
T ss_pred EEeCCCcEEEEEccchhhhcc-------------------------------------hhhhhcc--eeeeccC-CCCce
Confidence 999999999999997533222 1223433 4889998 88876
Q ss_pred -EEEEecCCCeEEEEEecC-CeEEEEeecCCceeeEEEecCC-CCeEEEeecCCcEEEecCCc-----------------
Q 012712 357 -YVVSGSDCGRIFIWKKKG-GELIRVIEADRHVVNCIEPHPH-STVLASSGIESDIKILTPNA----------------- 416 (458)
Q Consensus 357 -~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~iw~~~~----------------- 416 (458)
+|+++++||.|+|||.+. ..+++++.+|...|.++.|+|. .++|.+++.|..|.+|....
T Consensus 228 ~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCc
Confidence 677999999999999874 4688999999999999999996 45788999999999995321
Q ss_pred -------------ccccccccccccEEEEEEecCCcEE-EeeecCCceEE
Q 012712 417 -------------ADRATLPTNIEQVCFSIYSADYWWS-KSQNFSCSILL 452 (458)
Q Consensus 417 -------------~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~d~~i~~ 452 (458)
+.+.++..|...|.+++||.-..|+ |+-+.||.+.|
T Consensus 308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 2233556788889999999888765 67899999876
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=3.3e-23 Score=182.73 Aligned_cols=291 Identities=20% Similarity=0.278 Sum_probs=217.5
Q ss_pred eEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC
Q 012712 48 VLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD 127 (458)
Q Consensus 48 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d 127 (458)
+.+++.++.|.||..+|.|+.|...|.++++|+.|..++||..++..++... .+|.+.|+.++.+. +..++++++.|
T Consensus 177 vqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~--~n~~iaaaS~D 253 (1113)
T KOG0644|consen 177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSS--NNTMIAAASND 253 (1113)
T ss_pred HHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccch--hhhhhhhcccC
Confidence 3445777888999999999999999999999999999999999999998887 89999999999998 88899999999
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
..|++|.+..+..+.. +.+|++.|++++|+|- .+.+.||++++||.+-.-.. +...+. ... ...-+.
T Consensus 254 ~vIrvWrl~~~~pvsv--LrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~--y~prp~-~~~---~~~~~~ 320 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVSV--LRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRI--YVPRPL-KFT---EKDLVD 320 (1113)
T ss_pred ceEEEEecCCCchHHH--HhccccceeeeccCcc-----ccCCCCCceEeccccccccc--cCCCCC-Ccc---ccccee
Confidence 9999999999888766 8999999999999993 37889999999998811111 110110 000 223455
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC-cEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE-FIY 285 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~-~i~ 285 (458)
++.|... +..+++++.|+.-..|....... +...+.-+.++.+- .+.++.-.+ .+.
T Consensus 321 s~~~~~~-~~~f~Tgs~d~ea~n~e~~~l~~---------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 321 SILFENN-GDRFLTGSRDGEARNHEFEQLAW---------------------RSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred eeecccc-ccccccccCCcccccchhhHhhh---------------------hccceEEEeccccccccceeeeeeeEee
Confidence 6666664 67899999999888777654321 11122222222222 233333333 688
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEecCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGSDC 364 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~~d 364 (458)
+|++.+ +.....+.+|... +..+.+ +|-.. ...+++.|
T Consensus 379 vwnl~~--------------------------------------g~l~H~l~ghsd~--~yvLd~-Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 379 VWNLYT--------------------------------------GQLLHNLMGHSDE--VYVLDV-HPFNPRIAMSAGYD 417 (1113)
T ss_pred eeeccc--------------------------------------chhhhhhcccccc--eeeeee-cCCCcHhhhhccCC
Confidence 899887 4556677788876 455555 66544 45589999
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
|...|||+-.|.+++.+......+....||+||..++....-|.+.|.....+
T Consensus 418 gst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs 470 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS 470 (1113)
T ss_pred CceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence 99999999999888776543456778899999999998888899999876654
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=8.8e-20 Score=159.09 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=172.3
Q ss_pred EEEEcCCCcEEEeecccccce-eeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712 121 IVTCAADGQVRHAQILERGGV-ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (458)
Q Consensus 121 l~s~~~dg~i~vw~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (458)
+++...++.|.+|++.+...+ ....+. +.+....++++|+++.+++++..++.|.+|++.............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~------ 77 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP------ 77 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec------
Confidence 344467899999999643322 212232 345677899999995444555568899999987321121111111
Q ss_pred ceeecceEEEEECCCCCcEEEEec-CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
.......++++|+ ++++++++ .++.|.+|++.+...... . .... ........++++|+|+++++
T Consensus 78 --~~~~p~~i~~~~~-g~~l~v~~~~~~~v~v~~~~~~g~~~~-----~------~~~~-~~~~~~~~~~~~p~g~~l~v 142 (330)
T PRK11028 78 --LPGSPTHISTDHQ-GRFLFSASYNANCVSVSPLDKDGIPVA-----P------IQII-EGLEGCHSANIDPDNRTLWV 142 (330)
T ss_pred --CCCCceEEEECCC-CCEEEEEEcCCCeEEEEEECCCCCCCC-----c------eeec-cCCCcccEeEeCCCCCEEEE
Confidence 1123568999998 45555554 588999999974321110 0 0001 11234567889999998866
Q ss_pred ec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc
Q 012712 279 YN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE 356 (458)
Q Consensus 279 ~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~ 356 (458)
.+ ++.|.+||+.+........ ........... ...++| +|+|+
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~-------------------------------~~~~~~~~g~~---p~~~~~-~pdg~ 187 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQE-------------------------------PAEVTTVEGAG---PRHMVF-HPNQQ 187 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccC-------------------------------CCceecCCCCC---CceEEE-CCCCC
Confidence 55 4579999997632111000 00001111111 456777 99999
Q ss_pred EEEEecC-CCeEEEEEecC--C--eEEEEeecC------CceeeEEEecCCCCeEEEeec-CCcEEEecCCccc-ccccc
Q 012712 357 YVVSGSD-CGRIFIWKKKG--G--ELIRVIEAD------RHVVNCIEPHPHSTVLASSGI-ESDIKILTPNAAD-RATLP 423 (458)
Q Consensus 357 ~l~~~~~-dg~i~iwd~~~--~--~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~~~~-~~~~~ 423 (458)
+++++.. +++|.+|++.. + +.+..+..+ ......+.++|++++|+++.. ++.|.+|++.... ...+.
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe
Confidence 9988876 89999999973 3 334444322 112346889999999988854 7899999986432 22222
Q ss_pred ccc---ccEEEEEEecCCcEEEeeec-CCceEEEEE
Q 012712 424 TNI---EQVCFSIYSADYWWSKSQNF-SCSILLFEW 455 (458)
Q Consensus 424 ~~~---~~v~~~~~s~d~~~l~s~~~-d~~i~~w~~ 455 (458)
.+. .....++++|||++|+++.. +++|.+|+.
T Consensus 268 ~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 268 GHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred EEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 222 23567899999999987665 889999975
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=4.9e-22 Score=167.90 Aligned_cols=256 Identities=18% Similarity=0.197 Sum_probs=183.5
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
....|+|....|++++.||++++|+++... ......++++.+|++|.++|.|+++.+++..+.+|+.
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLqk~~-------------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQKAK-------------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhcccC-------------CccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 456688999999999999999999996311 2234567889999999999999999999999999999
Q ss_pred CCeEEEEECCCc---------ceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 82 DRRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 82 d~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
||+|+.|++... ..+...+.||.+.|+.+++++ ....|++++.||+++.|+...... .+.......+.
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 999999965321 123334479999999999999 888899999999999999876555 22111112233
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
..++.+-...+...++...-+.-.+.+++.......+. .....+......+.-+.++|. ..+.+++..|+.|+++|
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~---s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE---SSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFD 517 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeecc---ccCCCcccccCccceEEecCC-CCeeEecccCCceeccc
Confidence 44555554432223333333333344444443333332 222222212345778889997 57999999999999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~ 292 (458)
..+++... -...|...++++++.|+|-+|++++ ++.+++|.+...
T Consensus 518 n~~~~~l~---------------s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 518 NKTGKILH---------------SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccch---------------heeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 99987533 3444678899999999999999998 568999998763
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.89 E-value=1.5e-19 Score=157.64 Aligned_cols=282 Identities=12% Similarity=0.151 Sum_probs=173.3
Q ss_pred EEecCCCeEEEEECCC-cc--eeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeeccccccee-eeecccccc
Q 012712 77 ISGSDDRRVILWDWKT-ER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVE-TKLLGKHQG 151 (458)
Q Consensus 77 ~s~~~d~~i~iwd~~~-~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~-~~~~~~~~~ 151 (458)
++...++.|.+|++.+ ++ .+..+ .+.+....++++| ++++|++++ .++.|.+|++.....+. .... ....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~ 80 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPG 80 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCC
Confidence 4446789999999964 33 33333 2445678899999 999887664 57889999997322221 1111 1233
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
....++++|+++.++++...++.|.+|++.+.. ......... ....+.+++++|++...+++...++.|.+
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------~~~~~~~~~~~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--------GLEGCHSANIDPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--------CCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence 567899999995444444458999999997432 211111100 11235678899985444456667799999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
||+.+....... ...............++|+|+|+++++.. ++.|.+|+++......
T Consensus 153 ~d~~~~g~l~~~---------~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~------------ 211 (330)
T PRK11028 153 FTLSDDGHLVAQ---------EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI------------ 211 (330)
T ss_pred EEECCCCccccc---------CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE------------
Confidence 999763321100 00000001123456899999999987776 4589999997421100
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCc----cceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecCCeEEEEeec
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGH----RNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~ 383 (458)
.....+... ........+.+ +|+|++++++.. ++.|.+|++........+.+
T Consensus 212 ----------------------~~~~~~~~~p~~~~~~~~~~~i~~-~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 212 ----------------------ECVQTLDMMPADFSDTRWAADIHI-TPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred ----------------------EEEEEEecCCCcCCCCccceeEEE-CCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 001111000 00111345777 999999998854 68999999965432222222
Q ss_pred C---CceeeEEEecCCCCeEEEeec-CCcEEEecCC
Q 012712 384 D---RHVVNCIEPHPHSTVLASSGI-ESDIKILTPN 415 (458)
Q Consensus 384 ~---~~~v~~~~~s~~~~~l~s~~~-d~~i~iw~~~ 415 (458)
+ ......++++|||++|++++. +++|.+|+++
T Consensus 269 ~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 269 HQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2 124568999999999998775 8999999874
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.89 E-value=1.4e-20 Score=146.01 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=188.8
Q ss_pred eEeecCCCceEEEEEec-CCCEEEEecCC-------CeEEEEECCCc---------ceeeeeccCCCcceeEEEEccCCC
Q 012712 55 AKLDKHRGCVNTVSFNT-DGDILISGSDD-------RRVILWDWKTE---------RVKLSFHSGHNDNVFQAKIMPFTD 117 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~-~~~~l~s~~~d-------~~i~iwd~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~ 117 (458)
+.|..|.+.|..++-+| +.+.|+|+..+ -.+.||.+... +++..+...+-+.|.|+.|.| +
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P--n 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP--N 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC--C
Confidence 35677899999999999 45677776542 25789988643 233344345667999999999 9
Q ss_pred CeEEEEEcCCCcEEEeeccccccee-e---eeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCCCCCccceeeec
Q 012712 118 DRSIVTCAADGQVRHAQILERGGVE-T---KLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLRTGAATELFTCR 192 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 192 (458)
+..+++-. |..|.+|++.....+. . ..-.++....++-+|+|.. .+.++ ...|+++..||+++.+....+.-.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhh
Confidence 99998877 7899999998776521 1 1122356678888999932 24444 455799999999988776555422
Q ss_pred ccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC
Q 012712 193 PIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ 272 (458)
Q Consensus 193 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 272 (458)
|...+..+.|+|+...+|++|+.||.|++||.|..+ .+.....+|...+.++.|+|.
T Consensus 213 ---------Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------------~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 213 ---------HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------------FPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred ---------hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------------ccccccCCCceEEEEEEecCc
Confidence 444689999999877889999999999999999876 234556678899999999997
Q ss_pred C-cEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 273 S-ELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 273 ~-~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
- ++|.+++.+ .+.+|..........+............. ......+-....+.++..|+.. |.+++|
T Consensus 270 hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~d---------seer~kpL~dg~l~tydehEDS--VY~~aW 338 (370)
T KOG1007|consen 270 HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDED---------SEERVKPLQDGQLETYDEHEDS--VYALAW 338 (370)
T ss_pred cceEEEecCCCceeEEEeccccccccccccccccccCcchh---------hHHhcccccccccccccccccc--eEEEee
Confidence 4 566676655 78888876543222211100000000000 0000000112345677888885 999999
Q ss_pred ecCCCcEEEEecCCCeEEEEEe
Q 012712 351 FGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 351 ~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
.+.|-=.+|+-+.||++.|=.+
T Consensus 339 SsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 339 SSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccCCCeeEEEeccCceEEeecC
Confidence 4444446678899999988655
No 186
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.89 E-value=2.5e-20 Score=144.75 Aligned_cols=209 Identities=23% Similarity=0.282 Sum_probs=163.1
Q ss_pred cCCCceEEEEEecCC-----CEEEEecCCCeEEEEECCCcceee---ee-----ccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 59 KHRGCVNTVSFNTDG-----DILISGSDDRRVILWDWKTERVKL---SF-----HSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~-----~~l~s~~~d~~i~iwd~~~~~~~~---~~-----~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
.|.-+++.+.|.|+. ++|||++. .+++|.+...+... .. ...+.+++++..|... +.++|.+++
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igtSS 170 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGTSS 170 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-CcceeEeec
Confidence 588899999999976 46776553 69999987422111 11 1346678999999874 778999999
Q ss_pred CCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 126 ADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
-|-+..|||++++.. +.+ .+-.|..+|..++|...+..+|++.+.||.+++||++..+-...+...+. ..
T Consensus 171 iDTTCTiWdie~~~~~~vkT-QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-------~~ 242 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKT-QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-------PS 242 (364)
T ss_pred ccCeEEEEEEeeccccceee-EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-------CC
Confidence 999999999998733 333 36789999999999998888999999999999999998776555443221 23
Q ss_pred cceEEEEECCCCCcEEEEecCC-CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecC
Q 012712 204 VNLNAIAIDPRNANLFAVAGSD-EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYND 281 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 281 (458)
.+...++|++++.+++|+-..| ..|.+.|+|... .+......|.+.|+.++|.|.. ..|++++|
T Consensus 243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------TPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred CcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------------cceehhhcCcccccceEecCCCCceeeecCC
Confidence 4688999999989999887655 469999999764 2345667799999999999975 57888887
Q ss_pred C-cEEEEEccCC
Q 012712 282 E-FIYLFTQDMG 292 (458)
Q Consensus 282 ~-~i~i~~~~~~ 292 (458)
+ .+.+||+...
T Consensus 309 D~qaliWDl~q~ 320 (364)
T KOG0290|consen 309 DCQALIWDLQQM 320 (364)
T ss_pred cceEEEEecccc
Confidence 7 6999999874
No 187
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.89 E-value=2.6e-20 Score=146.86 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=197.8
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec-CCCceEEEEEe-------cCCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK-HRGCVNTVSFN-------TDGD 74 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s-------~~~~ 74 (458)
..-++|||.-+++-+.|..+++|++...-.-+ ..+.....+..-.++- -.+.|...+|- |+..
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~---------~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK---------KADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhccc---------CCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45589999999999999999999987321111 1112222222222221 23567777775 5678
Q ss_pred EEEEecCCCeEEEEECCCcceeeeec-cCCCc---ceeEEEEccCCCCeEEEEEcCCCcEEEeecc-cccceeeeecc--
Q 012712 75 ILISGSDDRRVILWDWKTERVKLSFH-SGHND---NVFQAKIMPFTDDRSIVTCAADGQVRHAQIL-ERGGVETKLLG-- 147 (458)
Q Consensus 75 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~---~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~-~~~~~~~~~~~-- 147 (458)
++|+.+.+.-|++||.-+|+....+. -.|.. ...+++|+| ||..|+.|- ...|+++|+. .+.........
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~--DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP--DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC--CCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 99999999999999999999876662 12333 346899999 999998775 5789999994 44332222122
Q ss_pred ---ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-
Q 012712 148 ---KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG- 223 (458)
Q Consensus 148 ---~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~- 223 (458)
+..+.+.+++|+|-....++.++....+-|+.-..+.+...+.. +.+.|+.+.|.++ ++.|++|.
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg----------h~gGvThL~~~ed-Gn~lfsGaR 270 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG----------HGGGVTHLQWCED-GNKLFSGAR 270 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc----------cCCCeeeEEeccC-cCeeccccc
Confidence 23677899999999877899999999999998888877766653 5668999999998 56777776
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccccc-ceeEE--EeCCCCcEEEEec-CCcEEEEEccCCCCCCCCC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQV-GITGL--AFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~--~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~ 299 (458)
.+-.|..||+|..+.. .-.+..|.. .-..| ...|++++|++|+ +|.|++||++..
T Consensus 271 k~dkIl~WDiR~~~~p--------------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~------- 329 (406)
T KOG2919|consen 271 KDDKILCWDIRYSRDP--------------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL------- 329 (406)
T ss_pred CCCeEEEEeehhccch--------------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC-------
Confidence 5778999999976421 111111222 22333 4468899999996 778999999873
Q ss_pred CCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 300 SSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
+..+..+..+.. .++.+++ .|--.++|+++..
T Consensus 330 ------------------------------gn~~sv~~~~sd--~vNgvsl-nP~mpilatssGq 361 (406)
T KOG2919|consen 330 ------------------------------GNEVSVTGNYSD--TVNGVSL-NPIMPILATSSGQ 361 (406)
T ss_pred ------------------------------CCcccccccccc--cccceec-CcccceeeeccCc
Confidence 122334444444 4788888 8888888877643
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=152.99 Aligned_cols=293 Identities=13% Similarity=0.085 Sum_probs=210.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc------cceeeeeccccccceEEEEEcCCCCeEEEEecCCCe
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
.+|.+.|+++.|+. ++++|++|+.|..+++|++... +++... -..|...|.|++|...+ ..+++|+.+++
T Consensus 53 ~~H~GCiNAlqFS~--N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~H~SNIF~L~F~~~N-~~~~SG~~~~~ 128 (609)
T KOG4227|consen 53 REHTGCINALQFSH--NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHPHRSNIFSLEFDLEN-RFLYSGERWGT 128 (609)
T ss_pred hhhccccceeeecc--CCeEEeecCCcceeeeechHHHHhhcCCCCceec-cCccccceEEEEEccCC-eeEecCCCcce
Confidence 58999999999999 9999999999999999998642 222221 22456899999999877 78999999999
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
|...|+++.+.+..+.... ..+.|+.+..+|. .+.|++.+.++.|.+||.+.... +...+++
T Consensus 129 VI~HDiEt~qsi~V~~~~~--------~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~--------~~~~~~~- 190 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENN--------NRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQN--------PISLVLP- 190 (609)
T ss_pred eEeeecccceeeeeecccC--------cccceeecccCCC-CceEEEEecCceEEEEeccCCCC--------CCceeee-
Confidence 9999999998777665221 3347999999998 68999999999999999987642 1111122
Q ss_pred ccccccccceeEEEeCCCC-cEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 255 NLIGDEQVGITGLAFSDQS-ELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
.........+.|+|.. .+|++.+ .+.+-+||.+......-.. ..
T Consensus 191 ---AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~-------------------------------~~ 236 (609)
T KOG4227|consen 191 ---ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR-------------------------------SM 236 (609)
T ss_pred ---cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-------------------------------hc
Confidence 2234457788899976 4556655 5579999988642211000 00
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeE-EEEeecCC-------ceeeEEEecCCCCeEEEee
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGEL-IRVIEADR-------HVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~-------~~v~~~~~s~~~~~l~s~~ 404 (458)
...+.... ..-.++.| +|+|+.+.+--....-.+||+.+..+ +..+. |. ..+.+++|..|.. +++|+
T Consensus 237 ~~~L~~~~--~~~M~~~~-~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGS 311 (609)
T KOG4227|consen 237 FKGLPQEN--TEWMGSLW-SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGS 311 (609)
T ss_pred cccCcccc--hhhhheee-CCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccC
Confidence 01111101 01355667 99999888876666667888866433 22222 22 2477888876654 89999
Q ss_pred cCCcEEEecCCc------------------------ccccccccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 405 IESDIKILTPNA------------------------ADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 405 ~d~~i~iw~~~~------------------------~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
.+-.|++|.+.. ++...+.+|..-+..+.|+|...+|++.+..+.++||-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 999999998752 12234567777789999999999999999999999994
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=2.6e-20 Score=165.39 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=202.1
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee----eeeccccccceEEEEE
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE----TKLLGKHQGRAHKLAI 158 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~----~~~~~~~~~~v~~~~~ 158 (458)
+.+.||+++........ -.....|.+++|+|+ +..+++.|..+|+|.+||++.+.... ......|..++..+.|
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 47999999877332222 245788999999996 78889999999999999998876621 1223468889999999
Q ss_pred cCCCC-eEEEEecCCCeEEEEeCCCCCccceeeecccCC--CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 159 EPGSP-HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 159 ~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
..+.. .-|++++.||.|..|+++.-............. .........+++++|.|.+.+.|++|+.+|.|.--+...
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 76531 348899999999999887654422221111111 001113446899999999899999999999988744433
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
.+... ...+.+......|.++|..+.++|=+. ++.+++|.+++||.....
T Consensus 380 ~~~~~-------~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~---------------------- 430 (555)
T KOG1587|consen 380 YTPAP-------EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI---------------------- 430 (555)
T ss_pred Ccccc-------cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----------------------
Confidence 32111 011223334556789999999999764 555666779999987631
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEecC--CeEEEEeecCCceeeEE
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKG--GELIRVIEADRHVVNCI 391 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~ 391 (458)
..++..+..+.. .+++++| ||-. ..++++..||.|.+||+.. ..++.+...+....+.+
T Consensus 431 ---------------~~Pl~~~~~~~~--~v~~vaW-SptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~ 492 (555)
T KOG1587|consen 431 ---------------ASPLLSLDSSPD--YVTDVAW-SPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV 492 (555)
T ss_pred ---------------CCcchhhhhccc--eeeeeEE-cCcCceEEEEEcCCCceehhhhhccccCCccccccccccccee
Confidence 223334444444 3899999 9876 4667888899999999864 34555555556677888
Q ss_pred EecCCCCeEEEeecCCcEEEecCCcc
Q 012712 392 EPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 392 ~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
.|++.|+.|+.|+..|++.+|++...
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99999999999999999999999643
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.7e-20 Score=170.06 Aligned_cols=297 Identities=21% Similarity=0.274 Sum_probs=209.1
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC--CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
..+-..+.|+|-...++++...-.|+|||.+.++....|..+ ....|+.+++....|..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 345667888998888999987789999999999887766322 345788998876556788999999999999975333
Q ss_pred c-ceee--e---ecc----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 139 G-GVET--K---LLG----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 139 ~-~~~~--~---~~~----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
. .... . .+. +..+.-.-+.|.....+ |++++.-..|+|||.........+... ....+++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~---------s~t~vTa 1213 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYG---------SSTLVTA 1213 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccC---------CCcccee
Confidence 2 1110 0 011 11111134567766644 555555789999999987776665432 3345777
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc--eeEEEeCCCCcE-EEEec-CCcE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG--ITGLAFSDQSEL-LVSYN-DEFI 284 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~-l~~~~-~~~i 284 (458)
+.-+..+++++++|..||.|++||.|..... +.......|... |..+.+.++|-- |++++ +|.|
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPD------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCcc------------ccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 7776666899999999999999999875422 223344455555 999999987643 77776 7789
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce-eeeeEEEEecCCCcEEEEecC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC-VTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~l~~~~~ 363 (458)
++||++..... .......|... ...+++.. +++...+|+|+.
T Consensus 1282 ~~~DlR~~~~e------------------------------------~~~~iv~~~~yGs~lTal~V-H~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1282 QLLDLRMSSKE------------------------------------TFLTIVAHWEYGSALTALTV-HEHAPIIASGSA 1324 (1387)
T ss_pred EEEecccCccc------------------------------------ccceeeeccccCccceeeee-ccCCCeeeecCc
Confidence 99999874111 11111122211 13677777 899999999998
Q ss_pred CCeEEEEEecCCeEEEEeecC-------CceeeEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 364 CGRIFIWKKKGGELIRVIEAD-------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+.|.||++ .|+.+..++.+ .+.+.+++|+|..-+||+|+.|.+|.||......
T Consensus 1325 -q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1325 -QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred -ceEEEEec-ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999998 56666555432 2467999999999999999999999999877554
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9e-20 Score=138.09 Aligned_cols=283 Identities=12% Similarity=0.198 Sum_probs=196.4
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCC---------cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKT---------ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
..|.+-+++|.+++|+.|..+|.|.+..+.+ ++.......+|.++|+.++|. ..+|++|+. |.|+-
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGGD-GLVYG 85 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeeccC-ceEEE
Confidence 4566778999999999999999999998753 222222227899999999996 356777764 99999
Q ss_pred eecccccc------eeeeeccccc-----cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcce
Q 012712 133 AQILERGG------VETKLLGKHQ-----GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM 201 (458)
Q Consensus 133 w~~~~~~~------~~~~~~~~~~-----~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 201 (458)
|..+.... ......+.|. ..|+++...|..+. ++.++.|+.++-||+++|+....++.
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rG---------- 154 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRG---------- 154 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcC----------
Confidence 98865433 1111122232 46899999998855 45555899999999999998887764
Q ss_pred eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (458)
|...+.++.--.. ...+++|++||++|+||.++.+....+.
T Consensus 155 HtDYvH~vv~R~~-~~qilsG~EDGtvRvWd~kt~k~v~~ie-------------------------------------- 195 (325)
T KOG0649|consen 155 HTDYVHSVVGRNA-NGQILSGAEDGTVRVWDTKTQKHVSMIE-------------------------------------- 195 (325)
T ss_pred Ccceeeeeeeccc-CcceeecCCCccEEEEeccccceeEEec--------------------------------------
Confidence 4557888887444 3578899999999999999876322100
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~ 361 (458)
.| +....++.|.+. .|.+++- +..+|++|
T Consensus 196 ----~y-------------------------------------------k~~~~lRp~~g~-wigala~---~edWlvCG 224 (325)
T KOG0649|consen 196 ----PY-------------------------------------------KNPNLLRPDWGK-WIGALAV---NEDWLVCG 224 (325)
T ss_pred ----cc-------------------------------------------cChhhcCcccCc-eeEEEec---cCceEEec
Confidence 00 011122223332 4666654 56688887
Q ss_pred cCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC-cE
Q 012712 362 SDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY-WW 440 (458)
Q Consensus 362 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~-~~ 440 (458)
+ ...+.+|.+.+.++..++.- .+.+..+.|- .+.+++++..+.+.-|.+..-.....+......++..|+-.- ++
T Consensus 225 g-Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKF 300 (325)
T ss_pred C-CCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEE
Confidence 6 45789999998888777652 3456777773 456777888889999988776555555555556666665544 66
Q ss_pred EEeeecCCceEEEE
Q 012712 441 SKSQNFSCSILLFE 454 (458)
Q Consensus 441 l~s~~~d~~i~~w~ 454 (458)
+-.++..+.+.|+.
T Consensus 301 ~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 301 ISIAGFSNKLHILK 314 (325)
T ss_pred EEecccceeeeeee
Confidence 76678888887764
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-19 Score=137.38 Aligned_cols=246 Identities=15% Similarity=0.155 Sum_probs=170.3
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
+.+|.+++|++|..+|.|.+..++.- . .++....-+. .+-..++|.++|..++|. ..+|++|+. |.
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl--~--------s~sa~~~gk~-~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~ 82 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSL--D--------SGSAEPPGKL-KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GL 82 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhh--h--------ccccCCCCCc-ceeeccccCCCeeeeeee--hhheeeccC-ce
Confidence 46899999999999999999998731 1 1111111111 223458999999999998 446777764 99
Q ss_pred EEEEECCCccee------eee-ccCCC-----cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 85 VILWDWKTERVK------LSF-HSGHN-----DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 85 i~iwd~~~~~~~------~~~-~~~~~-----~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
|+=|........ .+. ..-|. ..|+++-..| ..+-+++++.|+.+.-||+++++.... +.+|++.
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~G~i~r~--~rGHtDY 158 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLEDGRIQRE--YRGHTDY 158 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecCCEEEEE--EcCCcce
Confidence 999987654321 111 01122 3688999998 666777777999999999999886655 9999999
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
+.++.--... ..+++|++||++++||.++++.++.+...+............|.+++-+. .++++|+ ...+.+|.
T Consensus 159 vH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 159 VHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWH 233 (325)
T ss_pred eeeeeecccC-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEe
Confidence 9999985444 35899999999999999999998888765443322211333567777765 3777665 45799999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
++..+....+ .-..++..+.|..+ .+++++ .+.+.-|.+..
T Consensus 234 Lrsse~t~vf----------------pipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 234 LRSSESTCVF----------------PIPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ccCCCceEEE----------------ecccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 9987633221 12346667777554 455555 44788887754
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.87 E-value=2.2e-19 Score=155.42 Aligned_cols=330 Identities=15% Similarity=0.127 Sum_probs=198.8
Q ss_pred EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCC
Q 012712 13 ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKT 92 (458)
Q Consensus 13 l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~ 92 (458)
+++-..++.|.|.|..+.+.+. ++......-..+.|+|||+++++++.|+.|.++|+.+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~---------------------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVA---------------------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEE---------------------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS
T ss_pred EEEecCCCEEEEEECCCCeEEE---------------------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc
Confidence 4566678999999999887764 3655444445578999999999999999999999999
Q ss_pred cceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeeeeccc-----cccceEEEEEcCCCCeEE
Q 012712 93 ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGK-----HQGRAHKLAIEPGSPHVF 166 (458)
Q Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l 166 (458)
++.+.++.. .....++++++ ||++++++. .++.+.++|.++.+.+......+ ....+..+..+|..+.++
T Consensus 68 ~~~v~~i~~--G~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 68 GKVVATIKV--GGNPRGIAVSP--DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp SSEEEEEE---SSEEEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred ccEEEEEec--CCCcceEEEcC--CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 999888843 34578899999 999998776 58999999999888766533222 234677888888885555
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (458)
++.-+.+.|.+.|....+....-... .........|+|++..++++...+..|-++|..+.+.......+.
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~~~i~---------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKVTTIK---------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SS
T ss_pred EEEccCCeEEEEEeccccccceeeec---------ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccc
Confidence 55555688988898776543322111 122457789999843344555677799999998876543322111
Q ss_pred CCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 247 PADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
..|..+...+--...|...++...+. +-.........
T Consensus 215 -----------~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v------------------------------ 253 (369)
T PF02239_consen 215 -----------KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV------------------------------ 253 (369)
T ss_dssp -----------SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-------------------------------
T ss_pred -----------cccccccccccCCCcceEEeeccccceecccccCCcccc------------------------------
Confidence 12333333332111223333333221 22222221100
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEEEEe----cCCCeEEEEEecCCeEEEEeecCC-ceeeEEEecCCCCe
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG----SDCGRIFIWKKKGGELIRVIEADR-HVVNCIEPHPHSTV 399 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~ 399 (458)
.+....+.++.+.....+ .-+.. +|+++++.+. ...++|.++|.++.+.+.++.... ..+..+.|++||+.
T Consensus 254 ~d~~~wkvv~~I~~~G~g---lFi~t-hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG---LFIKT-HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp STTTBTSEEEEEE-SSSS-----EE---TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred chhhcCeEEEEEECCCCc---ceeec-CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 000114455555554443 33444 9999999987 445899999999998888875332 35889999999997
Q ss_pred EEEeec--CCcEEEecCCcccccc
Q 012712 400 LASSGI--ESDIKILTPNAADRAT 421 (458)
Q Consensus 400 l~s~~~--d~~i~iw~~~~~~~~~ 421 (458)
+..+.. ++.|.+||..+.+...
T Consensus 330 v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEECCCcEEEE
Confidence 655443 3479999999887653
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=9.2e-20 Score=141.65 Aligned_cols=291 Identities=14% Similarity=0.164 Sum_probs=203.7
Q ss_pred eeeeEeecCCCceEEEEEec---CCCEEEEecC----CCeEEEEEC--CCcceeeeeccCCCcceeEEEEccCCCC----
Q 012712 52 GIYAKLDKHRGCVNTVSFNT---DGDILISGSD----DRRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDD---- 118 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~----d~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 118 (458)
+.+..+..+ -++.++.|+. ...+||.|+. ...|.|-.+ ++++.+..-...|.-+++.+.|.| +.
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiP--d~~g~~ 112 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIP--DSKGVY 112 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecC--CccccC
Confidence 334444432 4678899984 2357888874 355666544 344544433347999999999999 54
Q ss_pred -eEEEEEcCCCcEEEeecccccc--eee-----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cce
Q 012712 119 -RSIVTCAADGQVRHAQILERGG--VET-----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TEL 188 (458)
Q Consensus 119 -~~l~s~~~dg~i~vw~~~~~~~--~~~-----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~ 188 (458)
.+|||++ -.+|+|.+...+. ... ..-..+..++++..|+.-.++++.+++-|-+..+||++++.. +++
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT 190 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence 4566665 3799999874321 111 112346679999999998889999999999999999999733 221
Q ss_pred eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-ccccceeEE
Q 012712 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DEQVGITGL 267 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 267 (458)
.... |..+|..++|...+.+.|++.+.||.+|+||+|..+... ..... ....+...+
T Consensus 191 QLIA---------HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-------------IIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 191 QLIA---------HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-------------IIYEDPSPSTPLLRL 248 (364)
T ss_pred EEEe---------cCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-------------EEecCCCCCCcceee
Confidence 1111 667899999999777899999999999999999875211 01111 114577889
Q ss_pred EeCCCC-cEEEEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceee
Q 012712 268 AFSDQS-ELLVSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVT 344 (458)
Q Consensus 268 ~~~~~~-~~l~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (458)
+|+++. +++|+-..+ .|.+.|++.. ..++..+.+|...
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P-------------------------------------~tpva~L~~H~a~-- 289 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVP-------------------------------------CTPVARLRNHQAS-- 289 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCC-------------------------------------CcceehhhcCccc--
Confidence 999865 577776644 6999999864 4567788999985
Q ss_pred eeEEEEecCC-CcEEEEecCCCeEEEEEecCCeE------EEEeecCCceeeEEEecCC-CCeEEEeecCCcEEE
Q 012712 345 VKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGEL------IRVIEADRHVVNCIEPHPH-STVLASSGIESDIKI 411 (458)
Q Consensus 345 i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~i~i 411 (458)
|++++| .|. ...|+++++|..+.+||+.+.-. +..+. ..+.|+.++|++. ...++.+. ++++.|
T Consensus 290 VNgIaW-aPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 290 VNGIAW-APHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred ccceEe-cCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999 665 56899999999999999965321 22222 4567999999964 55777665 455544
No 195
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=9.6e-21 Score=153.17 Aligned_cols=210 Identities=21% Similarity=0.265 Sum_probs=161.2
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce-----eeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV-----ETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
.+|+++|..+.|+|+ +...||+|+.|.+|.||++..+... ....+.+|...|--++|+|...+.|++++.|..|
T Consensus 78 ~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred cCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 689999999999997 6789999999999999999776432 2345889999999999999998999999999999
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
.+||+.+++..-.+. |...|.+++|+-+ |.++++.+.|..|+|||.++++....
T Consensus 157 ~iWnv~tgeali~l~-----------hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~~v~e-------------- 210 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD-----------HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGTVVSE-------------- 210 (472)
T ss_pred EEEeccCCceeeecC-----------CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCcEeee--------------
Confidence 999999998776655 5557999999998 78999999999999999999875432
Q ss_pred cccccccceeEEEeCCCCcEEEEec----CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc
Q 012712 256 LIGDEQVGITGLAFSDQSELLVSYN----DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI 331 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (458)
-..+....-..+.|..+|.++.+|- +..+-+||..+-... .
T Consensus 211 ~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----------------------------------~ 255 (472)
T KOG0303|consen 211 GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-----------------------------------I 255 (472)
T ss_pred cccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-----------------------------------c
Confidence 1122233456677888998666654 236999997763211 1
Q ss_pred CceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCe
Q 012712 332 APQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGE 376 (458)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 376 (458)
....+....+ |. +-|+++|.+.++ +|-.|+.||-|.+....
T Consensus 256 ~~~elDtSnG---vl-~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 256 ALQELDTSNG---VL-LPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEeccCCc---eE-EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 1223333322 33 334599988776 56679999999996654
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=153.01 Aligned_cols=268 Identities=10% Similarity=0.130 Sum_probs=188.3
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC------CCCeEEEEecCCCeE
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP------GSPHVFYTCGEDGLV 175 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~l~s~~~dg~i 175 (458)
.|...+.++.|+. ....+.+++.+..+.-|++.+... ....+. .+.-.+.+..-+ .+...|+.++.||.+
T Consensus 12 r~~e~vc~v~w~~--~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p-~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS--NEEIYFVSDDHQIFKWSDVSRDSV-EVAKLP-DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccc--cceEEEeccCceEEEeecccchhh-hhhhCC-cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 5677778999986 555555555444444445543322 211111 001111111111 123468888999999
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
.+.+- .++....... |.+.+.+-.|+|+ |.-|+++++||.|++|.-...- ..
T Consensus 88 ~il~k-~~rVE~sv~A----------H~~A~~~gRW~~d-GtgLlt~GEDG~iKiWSrsGML----------------RS 139 (737)
T KOG1524|consen 88 VILNK-SARVERSISA----------HAAAISSGRWSPD-GAGLLTAGEDGVIKIWSRSGML----------------RS 139 (737)
T ss_pred EEecc-cchhhhhhhh----------hhhhhhhcccCCC-CceeeeecCCceEEEEeccchH----------------HH
Confidence 88863 3444333332 6668899999998 7899999999999999864321 22
Q ss_pred cccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712 256 LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (458)
.......+|.|++|.|+..-++.+..+.+.+=.+.. ...+-.
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~--------------------------------------n~k~i~ 181 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAA--------------------------------------NSKIIR 181 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEEecCCeEEEeeccc--------------------------------------ccceeE
Confidence 333456789999999999988888888777766554 234556
Q ss_pred ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
.+.|.+- |.++.| ++..+++++|++|-..++||. .|..+..-..|..+|++++|.|+ +.++.++. +++|+
T Consensus 182 WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---- 251 (737)
T KOG1524|consen 182 WRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---- 251 (737)
T ss_pred EeccCcE--EEEeec-CccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeee-eeeee----
Confidence 7788885 899999 999999999999999999997 67888888889999999999999 66666664 45552
Q ss_pred cccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 416 AADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.....+.|..++|||||..++.|...|.+.+=..
T Consensus 252 ------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 252 ------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred ------cCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 1223567999999999999999999998765433
No 197
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.86 E-value=1.8e-19 Score=165.94 Aligned_cols=354 Identities=14% Similarity=0.101 Sum_probs=216.2
Q ss_pred eeeeEeecCCCceEEEEEecCC-CEEEEecCCCeEEEEECCCcce-------eeeeccCCCcceeEEEEccCCCCeEEEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDG-DILISGSDDRRVILWDWKTERV-------KLSFHSGHNDNVFQAKIMPFTDDRSIVT 123 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~~l~s 123 (458)
.++..+..|...|..++.+++. .+++|||.||+|++|+...-.. ..++ ......+.++.+.+ .++.+|.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~--~~~~~Av 1115 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCG--NGDQFAV 1115 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEecc--CCCeEEE
Confidence 4556788999999999988765 9999999999999999864321 2222 23467889999999 9999999
Q ss_pred EcCCCcEEEeecccccce-----eeeecc--ccccceEEEEEcCCCCe-EEEEecCCCeEEEEeCCCCCccceeeecccC
Q 012712 124 CAADGQVRHAQILERGGV-----ETKLLG--KHQGRAHKLAIEPGSPH-VFYTCGEDGLVQHFDLRTGAATELFTCRPID 195 (458)
Q Consensus 124 ~~~dg~i~vw~~~~~~~~-----~~~~~~--~~~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 195 (458)
++.||.|++.++...... +.+... .....+..-+|...... .++.+..-+.|..||++.......++...
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~-- 1193 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL-- 1193 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc--
Confidence 999999999998762211 111111 22223334445443333 78888888999999999887776665433
Q ss_pred CCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC---
Q 012712 196 DRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--- 272 (458)
Q Consensus 196 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--- 272 (458)
..+.|++++.+|. +++++.|+..|.+.+||+|-+..... ...++..+|+.+..+|-
T Consensus 1194 ------~hG~vTSi~idp~-~~WlviGts~G~l~lWDLRF~~~i~s--------------w~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1194 ------RHGLVTSIVIDPW-CNWLVIGTSRGQLVLWDLRFRVPILS--------------WEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred ------cccceeEEEecCC-ceEEEEecCCceEEEEEeecCceeec--------------ccCcccCCcceEEeeccCCC
Confidence 3447999999997 78999999999999999997754322 12223456776666653
Q ss_pred CcEEEEecC---CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEE
Q 012712 273 SELLVSYND---EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVN 349 (458)
Q Consensus 273 ~~~l~~~~~---~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 349 (458)
....++++. +.+.+|++.++.....+..+..... +......+ . ... .+.- ......
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~------------ls~~~Ps~-~-~~k-----p~~~--~~~~~~ 1311 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPI------------LSYALPSN-D-ARK-----PDSL--AGISCG 1311 (1431)
T ss_pred CceEEEecccCCCceeeeecccCcceEEEEcCCCCcc------------hhhhcccc-c-CCC-----CCcc--cceeee
Confidence 345555543 3699999998765444332200000 00000000 0 000 1111 112222
Q ss_pred EecCCCcEEEEecCCCeEEEEEecCCeEEE-EeecCCceeeEEEecCCCCeEEEeecC--------------CcE-EEec
Q 012712 350 FFGPKCEYVVSGSDCGRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSGIE--------------SDI-KILT 413 (458)
Q Consensus 350 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------~~i-~iw~ 413 (458)
+ ...+.++.+|+.|..|+.||....+... ...+..........+.+ ..++.++.- ... ..=.
T Consensus 1312 ~-~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~ 1389 (1431)
T KOG1240|consen 1312 V-CEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQK 1389 (1431)
T ss_pred c-ccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccc
Confidence 2 3345688899999999999986554331 12222212222222211 112222210 000 0111
Q ss_pred CCcccccccccccccEEEEEEecCC-cEEEeeecCCceEEEE
Q 012712 414 PNAADRATLPTNIEQVCFSIYSADY-WWSKSQNFSCSILLFE 454 (458)
Q Consensus 414 ~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~ 454 (458)
+..+.......|...|+++++-... .+|++++.||.|+||.
T Consensus 1390 ~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1390 LRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 1122223445678889999876554 7889999999999994
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=6.6e-18 Score=135.91 Aligned_cols=290 Identities=13% Similarity=0.192 Sum_probs=199.7
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC--CcEEEeecccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILER 138 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~ 138 (458)
...+..+.|..+...|..|+.|| -++|..+..+..... ......|..+-|+. .++|..+.+ ..+++.+.+..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSS----SLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSS----SLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeeccc----ceeEEEecCCCceEEEEEcccC
Confidence 45677778999999999999998 688887765542222 22334566677754 566655544 45889998877
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
..+.... ...+|.++.++.+ .|+++-.+ .|+|||+++.+.+..+...+. +...+.++++++. +.+
T Consensus 79 ~~ICe~~---fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~-------n~~gl~AlS~n~~-n~y 143 (391)
T KOG2110|consen 79 TTICEIF---FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPP-------NPKGLCALSPNNA-NCY 143 (391)
T ss_pred ceEEEEe---cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCC-------CccceEeeccCCC-Cce
Confidence 7666533 4468999999874 35555544 499999999998877754322 2224556666654 356
Q ss_pred EEEe--cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-c-EEEEEccCCCC
Q 012712 219 FAVA--GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-F-IYLFTQDMGLG 294 (458)
Q Consensus 219 l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~-i~i~~~~~~~~ 294 (458)
++.- ...|.|.+||+.+.+ +......|++.+.+++|+++|.+||++++. + |++|.+.++
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~---------------~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G-- 206 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQ---------------PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG-- 206 (391)
T ss_pred EEecCCCCCceEEEEEcccce---------------eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc--
Confidence 6643 246889999998865 345566899999999999999999999965 4 899999874
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
+....|+.......|.+++| +|++++|++.+..++|++|.++.
T Consensus 207 ------------------------------------~kl~eFRRG~~~~~IySL~F-s~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 207 ------------------------------------QKLYEFRRGTYPVSIYSLSF-SPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred ------------------------------------cEeeeeeCCceeeEEEEEEE-CCCCCeEEEecCCCeEEEEEecc
Confidence 44555554444667999999 99999999999999999999853
Q ss_pred CeE---------------------------E----------EEeecCCcee-eEEEec--CCCCeEEEeecCCcEEEecC
Q 012712 375 GEL---------------------------I----------RVIEADRHVV-NCIEPH--PHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 375 ~~~---------------------------~----------~~~~~~~~~v-~~~~~s--~~~~~l~s~~~d~~i~iw~~ 414 (458)
... + .+.+...... ..+.+. +..+++..++.||.+..|.+
T Consensus 250 ~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l 329 (391)
T KOG2110|consen 250 VSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRL 329 (391)
T ss_pred cccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEc
Confidence 210 0 0001011111 223333 46778888999999999987
Q ss_pred Cc---ccccccccc
Q 012712 415 NA---ADRATLPTN 425 (458)
Q Consensus 415 ~~---~~~~~~~~~ 425 (458)
.. |++..+..|
T Consensus 330 ~~~~gGec~lik~h 343 (391)
T KOG2110|consen 330 PPKEGGECALIKRH 343 (391)
T ss_pred CCCCCceeEEEEee
Confidence 53 455444433
No 199
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=4.1e-21 Score=169.69 Aligned_cols=277 Identities=17% Similarity=0.198 Sum_probs=211.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.+|...|+|+.|.. .|.++++++.|..++||..++..+... ..+|.+.|+.++.+.++ .++++++.|..|++|-+
T Consensus 187 lgH~naVyca~fDr--tg~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDR--TGRYIITGSDDRLVKIWSMETARCLAS--CRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRL 261 (1113)
T ss_pred Hhhhhheeeeeecc--ccceEeecCccceeeeeeccchhhhcc--CCCCccccchhccchhh-hhhhhcccCceEEEEec
Confidence 58999999999999 999999999999999999988888766 89999999999999887 78899999999999999
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
..+.++..+.. +.+.|++++|+|. . +.+.||++++||.+-.-.. +.+.......
T Consensus 262 ~~~~pvsvLrg----------htgavtaiafsP~-~----sss~dgt~~~wd~r~~~~~-----------y~prp~~~~~ 315 (1113)
T KOG0644|consen 262 PDGAPVSVLRG----------HTGAVTAIAFSPR-A----SSSDDGTCRIWDARLEPRI-----------YVPRPLKFTE 315 (1113)
T ss_pred CCCchHHHHhc----------cccceeeeccCcc-c----cCCCCCceEeccccccccc-----------cCCCCCCccc
Confidence 99999888764 6678999999996 2 7789999999999821111 0111111122
Q ss_pred ccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...+.++.|..++.-+++++++ .-..|.+... ..+
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l--------------------------------------------~~~ 351 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEARNHEFEQL--------------------------------------------AWR 351 (1113)
T ss_pred ccceeeeeccccccccccccCCcccccchhhHh--------------------------------------------hhh
Confidence 3556777777778777777744 5555554321 111
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeE-EEeecCCcEEEecCCccc
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVL-ASSGIESDIKILTPNAAD 418 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~d~~i~iw~~~~~~ 418 (458)
... +.-+.+.+--..+.+++-.+..+.+|++.+|.++..+.+|...+..|.++|-+..+ .+++.||...|||+..+.
T Consensus 352 ~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 352 SNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred ccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 111 11111111122466777788899999999999999999999999999999977765 478999999999998875
Q ss_pred ccc-cccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 419 RAT-LPTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 419 ~~~-~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
..+ .......+..-+||+||..++....-|.+.|.-
T Consensus 430 pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 430 PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cceeeecccceeeccccCCCCceEecCCCCCceEEec
Confidence 442 223355677889999999888877778887764
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.86 E-value=9.2e-18 Score=135.08 Aligned_cols=237 Identities=11% Similarity=0.126 Sum_probs=175.8
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLR 181 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~ 181 (458)
...+..+.|.. +...|..|+.|| .++++......... .......|-.+-|+. .+++..+.+ +.+++++.+
T Consensus 5 ~~ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~~k~~~--~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 5 KPTINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPFEKCFS--KDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred Ccceeeeeecc--ceeEEEccCCCc-eeEEecCchHHhhc--ccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence 34567777888 888888888887 47887765444211 122223455556665 344444443 458899988
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (458)
.+..+..+. ...+|.++.++.+ .|+++-++. |+|||+++.+++.... ....+.
T Consensus 77 k~~~ICe~~-----------fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~MklLhTI~------------t~~~n~ 129 (391)
T KOG2110|consen 77 KKTTICEIF-----------FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMKLLHTIE------------TTPPNP 129 (391)
T ss_pred cCceEEEEe-----------cCCceEEEEEccc---eEEEEEccc-EEEEecccceeehhhh------------ccCCCc
Confidence 887766665 3447899999764 555555544 9999999998765532 222244
Q ss_pred cceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 262 VGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
..+..+.+++.+.++|.-+ .|.|.+||..+ .+....+..
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--------------------------------------l~~v~~I~a 171 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--------------------------------------LQPVNTINA 171 (391)
T ss_pred cceEeeccCCCCceEEecCCCCCceEEEEEccc--------------------------------------ceeeeEEEe
Confidence 5677777777788888654 45799999987 567778889
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEeecCC--ceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEADR--HVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
|.+. +-+++| +++|.+||++++.|+ ||++.+.+|+.+.+++-.. ..|.+++|+|++++|++.|..++|+|+.++
T Consensus 172 H~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 172 HKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9986 899998 999999999999997 7899999999999997433 468999999999999999999999999876
Q ss_pred c
Q 012712 416 A 416 (458)
Q Consensus 416 ~ 416 (458)
.
T Consensus 249 ~ 249 (391)
T KOG2110|consen 249 K 249 (391)
T ss_pred c
Confidence 4
No 201
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.4e-19 Score=143.51 Aligned_cols=195 Identities=12% Similarity=0.093 Sum_probs=142.4
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (458)
.+++|+++ +..+++++.||++|+|+..+... ......|...|.++.|+|||++|++-+.+..++
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t---------------~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLT---------------ILEEIAHHAEVKDLDFSPDGKFLASIGADSARV 211 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchh---------------hhhhHhhcCccccceeCCCCcEEEEecCCceEE
Confidence 68999998 68999999999999999766542 223445788999999999999999999889999
Q ss_pred EEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-----cEEEEe
Q 012712 287 FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-----EYVVSG 361 (458)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-----~~l~~~ 361 (458)
|+.+++..... ............+.| +.|+ ...+..
T Consensus 212 W~~~~g~~~a~--------------------------------------~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 212 WSVNTGAALAR--------------------------------------KTPFSKDEMFSSCRF-SVDNAQETLRLAASQ 252 (398)
T ss_pred EEeccCchhhh--------------------------------------cCCcccchhhhhcee-cccCCCceEEEEEec
Confidence 99998632221 111111112344445 6665 233333
Q ss_pred cCCCeEEEEEecCCeE-----EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccc--ccccccEEEEEE
Q 012712 362 SDCGRIFIWKKKGGEL-----IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATL--PTNIEQVCFSIY 434 (458)
Q Consensus 362 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~--~~~~~~v~~~~~ 434 (458)
..-+.|+.|++...+. .+....-...|++++.++||+++|.|+.||.|-|++..+-++..+ ..|..-|+.+.|
T Consensus 253 ~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF 332 (398)
T KOG0771|consen 253 FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF 332 (398)
T ss_pred CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence 4446777777643322 111112234799999999999999999999999999998877754 456777999999
Q ss_pred ecCCcEEEeeecCCceEEEEEe
Q 012712 435 SADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 435 s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
+||.+++++-+.|....|...-
T Consensus 333 ~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 333 SPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred cCCcCcccccccCCceeEEEEe
Confidence 9999999999999888876543
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.5e-19 Score=159.98 Aligned_cols=296 Identities=14% Similarity=0.165 Sum_probs=201.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeec---CCCceEEEEEec--CCCEEEE
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HRGCVNTVSFNT--DGDILIS 78 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~s~--~~~~l~s 78 (458)
+-++|-.+.++++.+...|+|||.+.++.+.. |.. -...|+.+.+-. |..+|++
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~---------------------F~n~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNG---------------------FDNGAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceecc---------------------ccCCCCCCCccceeeeecccchhheee
Confidence 45778888999999888999999998887643 222 245788888865 4468999
Q ss_pred ecCCCeEEEEECC-Cc----ceeeee------ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecc
Q 012712 79 GSDDRRVILWDWK-TE----RVKLSF------HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLG 147 (458)
Q Consensus 79 ~~~d~~i~iwd~~-~~----~~~~~~------~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~ 147 (458)
|+.||.|+||+-- +. +.+..+ ..+..+.=.-+.|.. ...+|+++|.-..|+|||.......... ..
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tGd~r~IRIWDa~~E~~~~di-P~ 1205 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTGDVRSIRIWDAHKEQVVADI-PY 1205 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecCCeeEEEEEecccceeEeec-cc
Confidence 9999999999642 21 222111 111111113456766 5556666666789999999776555443 22
Q ss_pred ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (458)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (458)
+....++++.-+..+.+++++|..||.|++||.+.......... .+.|....+|..+.+.+.+-..+++|+.+|.
T Consensus 1206 ~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~-----~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1206 GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV-----YREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred CCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee-----ecccCCcccceeEEeecCCCcceeeeccCCe
Confidence 34556777776655558999999999999999987654322221 1233333348999999875456999999999
Q ss_pred EEEEecCCCccCCCccCCCCCCCcCCCcccccc--ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712 228 TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE--QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
|++||+|....... .....+- .+..+++..++....+|+|+...|+||++.........
T Consensus 1281 I~~~DlR~~~~e~~------------~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k------- 1341 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETF------------LTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIK------- 1341 (1387)
T ss_pred EEEEecccCccccc------------ceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccc-------
Confidence 99999998521111 1111111 22589999999999999999988999998764321110
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
....|.+.... .+.+++| +|..-++|+|+.|.+|.||.....
T Consensus 1342 --------------------------~n~~F~~q~~g-s~scL~F-HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1342 --------------------------YNPGFMGQRIG-SVSCLAF-HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred --------------------------cCcccccCcCC-Ccceeee-cchhHhhhhccCCceEEEeecCCc
Confidence 11122222222 3688998 999999999999999999987554
No 203
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.84 E-value=6.5e-18 Score=146.32 Aligned_cols=326 Identities=13% Similarity=0.076 Sum_probs=191.0
Q ss_pred EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEE
Q 012712 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~ 156 (458)
++-..++.|.+.|..+.+.+.++..+. ..-..+.|+| |++++++++.||.|.++|+.+.+.+.. +. -......+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~--i~-~G~~~~~i 83 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVAT--IK-VGGNPRGI 83 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEE--EE--SSEEEEE
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEE--Ee-cCCCcceE
Confidence 455668999999999999988884333 3334578999 999999999999999999999887665 33 22346789
Q ss_pred EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
+++++|+.++++....+.+.++|.++.+.++.+......... ....+.++..+|....++++.-..+.|.+.|....
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 999999666666678899999999999988877643321110 22356778888875446666666688988887664
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
+.. ...............|+|++++++.+. .+.+.++|..+.+....+...
T Consensus 161 ~~~--------------~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g------------- 213 (369)
T PF02239_consen 161 KNL--------------KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG------------- 213 (369)
T ss_dssp SCE--------------EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S-------------
T ss_pred ccc--------------ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc-------------
Confidence 311 111111234566789999999877654 457999998764321110000
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 394 (458)
..........+ .|.....+... ...+...++.-....+.+||..+.+.++++.....+ ..+..+
T Consensus 214 -----------~~p~~~~~~~~-php~~g~vw~~---~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th 277 (369)
T PF02239_consen 214 -----------KKPHPGPGANF-PHPGFGPVWAT---SGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH 277 (369)
T ss_dssp -----------SSBEETTEEEE-EETTTEEEEEE---EBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--
T ss_pred -----------ccccccccccc-cCCCcceEEee---ccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC
Confidence 00000000001 12211112221 112222222222335567888899999999876666 788899
Q ss_pred CCCCeEEEe----ecCCcEEEecCCcccccccccccc--cEEEEEEecCCcEEEeeecC--CceEEEE
Q 012712 395 PHSTVLASS----GIESDIKILTPNAADRATLPTNIE--QVCFSIYSADYWWSKSQNFS--CSILLFE 454 (458)
Q Consensus 395 ~~~~~l~s~----~~d~~i~iw~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~s~~~d--~~i~~w~ 454 (458)
|+++++.+. ...+.|.++|.++.+......... ++..+.|++||+.+..+..+ +.|.+||
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 999999887 445899999999986553322222 49999999999755443333 3699987
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=5.1e-19 Score=158.80 Aligned_cols=237 Identities=12% Similarity=0.145 Sum_probs=160.5
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
+..|.+||.+.... ..+ ..|...+..++|+| ||+.|+.++.+ ..|.+||+.+++......+.+| ...++|
T Consensus 183 ~~~i~i~d~dg~~~-~~l-t~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIV-NRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCc-eEe-ccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeE
Confidence 57899999875553 443 56788899999999 99999987653 4699999987654333223333 346899
Q ss_pred cCCCCeEEEEecCCCeEEEE--eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 159 EPGSPHVFYTCGEDGLVQHF--DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
+|++..++++.+.+|.+.+| |+.+++... +.. +...+....|+||+..++++...+|...+|++...
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~----------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTS----------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCeEe-ecc----------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 99995555555577765555 666554322 211 22246789999985444555556788888887543
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDH 316 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (458)
... ..... +.. ....|+|+|+.|+..+.+.+.+||+.++..
T Consensus 325 ~~~--------------~~~l~-~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---------------------- 365 (429)
T PRK01742 325 GGG--------------ASLVG-GRG--YSAQISADGKTLVMINGDNVVKQDLTSGST---------------------- 365 (429)
T ss_pred CCC--------------eEEec-CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCe----------------------
Confidence 210 01111 122 357899999999888877788899876421
Q ss_pred ccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec--CCeEEEEeecCCceeeEEEec
Q 012712 317 TSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GGELIRVIEADRHVVNCIEPH 394 (458)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s 394 (458)
..+..... ...+.| +|||++|+.++.++.+.+|++. +|+.++.+..|.+.+...+|+
T Consensus 366 -----------------~~lt~~~~---~~~~~~-sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 366 -----------------EVLSSTFL---DESPSI-SPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred -----------------EEecCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 11111111 234556 9999999999999988888763 688888898888889999999
Q ss_pred CC
Q 012712 395 PH 396 (458)
Q Consensus 395 ~~ 396 (458)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 84
No 205
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=5.2e-19 Score=143.27 Aligned_cols=206 Identities=17% Similarity=0.216 Sum_probs=158.3
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC-CEEEEec
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG-DILISGS 80 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~ 80 (458)
|..+.|-+...+|+|++|.+|.||++-.+.+... -.+.+..|.||...|--++|+|.. +.|++++
T Consensus 86 Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 86 DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred ccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 4555666677899999999999999986655432 125677899999999999999964 7899999
Q ss_pred CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc-ceEEEEEc
Q 012712 81 DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG-RAHKLAIE 159 (458)
Q Consensus 81 ~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~v~~~~~~ 159 (458)
.|.+|.+|++.+++.+.++ .|..-|+++.|+. ||.+|++.+.|..|+|||.++++.+.. -.+|.+ .-..+.|-
T Consensus 152 ~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl 225 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITL--DHPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFL 225 (472)
T ss_pred CCceEEEEeccCCceeeec--CCCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEe
Confidence 9999999999999998887 4999999999999 999999999999999999999988766 355654 34456677
Q ss_pred CCCCeEEEEec----CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 160 PGSPHVFYTCG----EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 160 ~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
.++ . +++.+ .+..+-+||....+..-.+.... ....|.---+.|+.+-+.++|-.|+.|+.|.+..
T Consensus 226 ~~g-~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--------tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 226 ASG-K-IFTTGFSRMSERQIALWDPNNLEEPIALQELD--------TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred ccC-c-eeeeccccccccceeccCcccccCcceeEEec--------cCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 777 4 45444 35679999977655433222111 2334555567887544455666899999999987
Q ss_pred Cc
Q 012712 236 YK 237 (458)
Q Consensus 236 ~~ 237 (458)
..
T Consensus 296 d~ 297 (472)
T KOG0303|consen 296 EP 297 (472)
T ss_pred CC
Confidence 54
No 206
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=2.6e-18 Score=152.82 Aligned_cols=285 Identities=13% Similarity=0.061 Sum_probs=193.1
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcceeecc
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~ 205 (458)
+.+.+|++........ .......|.++.|+|..+++++.|+.+|.|.+||++.+... ..+.. ..+.+..+
T Consensus 222 ~~~~vW~~~~p~~Pe~--~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------~~~sh~~~ 293 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL--VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------LEVSHSEP 293 (555)
T ss_pred ceEEEEecCCCCCceE--EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------ccccCCcC
Confidence 4789999988733332 23356789999999999999999999999999999987663 22221 23346778
Q ss_pred eEEEEECCCC-CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEec-CC
Q 012712 206 LNAIAIDPRN-ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYN-DE 282 (458)
Q Consensus 206 v~~~~~~p~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-~~ 282 (458)
+..+.|..+- +.-|++++.||.|..|+++............+. ............++++.|.+.. ..++.|+ +|
T Consensus 294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~---~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK---KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG 370 (555)
T ss_pred eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccc---cccccccccccceeeEeeccCCCceEEEEcCCc
Confidence 8999997651 134889999999999988766542111111100 0001111234578899998854 3555666 45
Q ss_pred cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec
Q 012712 283 FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS 362 (458)
Q Consensus 283 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~ 362 (458)
.|+-=+-........ ...+....+..|.++ |.++.+ +|=+..++..+
T Consensus 371 ~v~~~~r~g~~~~~~------------------------------~~~~~~~~~~~h~g~--v~~v~~-nPF~~k~fls~ 417 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPE------------------------------VSYKGHSTFITHIGP--VYAVSR-NPFYPKNFLSV 417 (555)
T ss_pred EEEEEeccCCccccc------------------------------ccccccccccccCcc--eEeeec-CCCccceeeee
Confidence 554422221110000 001223345556664 888887 77665554444
Q ss_pred CCCeEEEEEec-CCeEEEEeecCCceeeEEEecCCCC-eEEEeecCCcEEEecCCccccc---ccccccccEEEEEEecC
Q 012712 363 DCGRIFIWKKK-GGELIRVIEADRHVVNCIEPHPHST-VLASSGIESDIKILTPNAADRA---TLPTNIEQVCFSIYSAD 437 (458)
Q Consensus 363 ~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~d~~i~iw~~~~~~~~---~~~~~~~~v~~~~~s~d 437 (458)
.|.+++||... ...++..+..+...+++++|||... .++++..||.|.|||+...... ....+....+.+.|+++
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCC
Confidence 49999999987 6777877887888899999999876 6778888999999999765433 22333455778889999
Q ss_pred CcEEEeeecCCceEEEEEe
Q 012712 438 YWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 438 ~~~l~s~~~d~~i~~w~~~ 456 (458)
|+.|+.|...|.+.+|+..
T Consensus 498 g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 498 GKLLAVGDANGTTHILKLS 516 (555)
T ss_pred CcEEEEecCCCcEEEEEcC
Confidence 9999999999999999863
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.84 E-value=6.6e-18 Score=133.30 Aligned_cols=225 Identities=13% Similarity=0.099 Sum_probs=166.2
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc---eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER---VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
+.--.++|+|.+|++|+..+|.+-....|.||...... ..+++ ..|...|+.+.|+| ..+.|++|+.|..-.+|
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap--~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAP--KSNRIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecC--CCCceeEccCCCCcccc
Confidence 33345799999999999999999999999999977655 33444 78999999999999 99999999999999999
Q ss_pred ec-ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 134 QI-LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
.. ..+...++..+..++..++++.|+|.+ +.|++|+....|.+|-++..+.=..-+..+ ......|.++.|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhik------kPirStv~sldWh 155 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIK------KPIRSTVTSLDWH 155 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhC------Cccccceeeeecc
Confidence 98 555556666678899999999999999 789999999999999887654321111000 0034468999999
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCc---cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGST---DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
|. +-++++|+.|+..++|..--....... ..+.....-+.........+.+..+.|+|+|..|+-.+ +..+.+-|
T Consensus 156 pn-nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 156 PN-NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred CC-cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence 97 689999999999999976433322211 11111111111111223467899999999999998766 55788887
Q ss_pred ccCC
Q 012712 289 QDMG 292 (458)
Q Consensus 289 ~~~~ 292 (458)
....
T Consensus 235 a~~p 238 (361)
T KOG1523|consen 235 AAGP 238 (361)
T ss_pred cCCC
Confidence 6654
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=147.17 Aligned_cols=208 Identities=16% Similarity=0.240 Sum_probs=157.9
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccce
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRA 153 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v 153 (458)
..|+.++.||.+.|-+ +.++....+ ..|.+.+.+-.|+| ||.-|+++++||.|++|.- ++-... .+.....+|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRS--tl~Q~~~~v 148 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRS--TVVQNEESI 148 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHH--HHhhcCcee
Confidence 5688889999999887 445554555 78999999999999 9999999999999999984 332222 245567789
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
.|++|.|+..+++++.+ +.+.+=.+.....+-..+. |.+-|.++.|+|. .+++++|++|-..++||.
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkA----------HDGiiL~~~W~~~-s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRA----------HDGLVLSLSWSTQ-SNIIASGGEDFRFKIWDA 215 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeecccccceeEEec----------cCcEEEEeecCcc-ccceeecCCceeEEeecc
Confidence 99999999977777665 4565555554443333332 6668999999998 689999999999999998
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccC
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (458)
.... ......|+.+|++++|+|+ +.++.++-+.+++=..+.
T Consensus 216 ~G~~----------------Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~---------------------- 256 (737)
T KOG1524|consen 216 QGAN----------------LFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV---------------------- 256 (737)
T ss_pred cCcc----------------cccCChhccceeeeeeccc-cceeeeeeeeeeecCCCc----------------------
Confidence 6543 1223447889999999999 777777766666322221
Q ss_pred CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+ .|..++| |+||..+++|+..|.+.+=
T Consensus 257 ---------------------------G--SifnlsW-S~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 257 ---------------------------G--SIFNLSW-SADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ---------------------------c--ceEEEEE-cCCCceeeccccCceEEEe
Confidence 1 4899999 9999999999999876543
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.9e-18 Score=144.22 Aligned_cols=172 Identities=20% Similarity=0.293 Sum_probs=128.8
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEE
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF 178 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 178 (458)
+.+|++.|+++.|+. +|.+|++|+.|-.+.|||....+.+.. .-.+|...|.++.|-|.. ..++++|..|..|+++
T Consensus 46 L~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~Kllhs-I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYKLLHS-ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hccccceecceeecC--CCCEEeecCCcceEEeecchhcceeee-eecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 379999999999999 999999999999999999986665553 367899999999999853 4688999999999999
Q ss_pred eCCCCCc----------cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 179 DLRTGAA----------TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 179 d~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
|+...+. ...+.+ +...|..++-.|.+++.+.++++||+|+-+|++....-..
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~c----------ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p------- 185 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSC----------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP------- 185 (758)
T ss_pred ecccccccccccCccchhhhhhh----------hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc-------
Confidence 9985321 112222 4457888999998889999999999999999997542111
Q ss_pred CCcCCCcccc--ccccceeEEEeCCCC-cEEEEecCC-cEEEEEccC
Q 012712 249 DYFCPPNLIG--DEQVGITGLAFSDQS-ELLVSYNDE-FIYLFTQDM 291 (458)
Q Consensus 249 ~~~~~~~~~~--~~~~~i~~~~~~~~~-~~l~~~~~~-~i~i~~~~~ 291 (458)
..-++..+.. ..--...++..+|.. .+|+.|+.+ -.++||.+.
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 0001111111 112356789999975 577777766 799999644
No 210
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=2e-17 Score=152.81 Aligned_cols=269 Identities=13% Similarity=0.063 Sum_probs=170.5
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
+.+..++.+.+++||+.||+||+||...-..-. + ..+...++.--...+.++.+.+.++.+|.++.
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------------~--s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------------G--SARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCc------------c--eeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 445677888999999999999999987322110 1 12222333335678999999999999999999
Q ss_pred CCeEEEEECCCcceee------eeccC-CCcceeEE-EEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 82 DRRVILWDWKTERVKL------SFHSG-HNDNVFQA-KIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~------~~~~~-~~~~i~~~-~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
||.|++.+++..+..+ ..... ..+.+.++ +|.. ..+. .|+.+...+.|..||++..............+.
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~-~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTA-IVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccc-cccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999987621111 11111 22333333 3333 1334 778888889999999988877665445556688
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC--cEEEEe-c-CCCeE
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVA-G-SDEYT 228 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~-~-~dg~i 228 (458)
|++++.+|.+ +.++.|+..|.+.+||++-+.++.....+ ...++..+..+|-.+ ...+++ . ..+.|
T Consensus 1198 vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P---------~~~~i~~v~~~~~~~~~S~~vs~~~~~~nev 1267 (1431)
T KOG1240|consen 1198 VTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHP---------ARAPIRHVWLCPTYPQESVSVSAGSSSNNEV 1267 (1431)
T ss_pred eeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCc---------ccCCcceEEeeccCCCCceEEEecccCCCce
Confidence 9999999999 79999999999999999988877666533 334566666555422 344444 3 57889
Q ss_pred EEEecCCCccCCCccCC--CC-CCCcCCCc--cccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 229 RLYDIRKYKWDGSTDFG--QP-ADYFCPPN--LIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~--~~-~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
.+|++.++......-.+ .| .....+.. ........+.+..-.+++-.+.++++..|+.||.......
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99999987533221111 11 11111111 0011112233333334444444455779999998876544
No 211
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.82 E-value=7.5e-18 Score=134.31 Aligned_cols=351 Identities=15% Similarity=0.183 Sum_probs=210.9
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcce----eeeeccCC------------CcceeEEEEccCCCCeEEEEE
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV----KLSFHSGH------------NDNVFQAKIMPFTDDRSIVTC 124 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~----~~~~~~~~------------~~~i~~~~~~~~~~~~~l~s~ 124 (458)
.+-|.++.|...|.+||||..+|.|.++.-..... .....+.| ...|..+.|.+..+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 46789999999999999999999999997543221 12222333 246889999985556677888
Q ss_pred cCCCcEEEeeccccccee----------------------------------eeeccccccceEEEEEcCCCCeEEEEec
Q 012712 125 AADGQVRHAQILERGGVE----------------------------------TKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~----------------------------------~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
..|.+|++|.+....... ...-..|+.-|+++.++.|. ..+++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~lS-A 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFLS-A 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEee-c
Confidence 889999999986532211 01123588889999999998 44454 4
Q ss_pred CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC--ccCCCCC
Q 012712 171 EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS--TDFGQPA 248 (458)
Q Consensus 171 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~ 248 (458)
.|=.|.+|+++-......+--.+...++. -..-|++..|+|...++|+-.+..|+|++.|+|...+-.. -.+..|.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEe--LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHH--HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 57889999987543322221111111111 2234788999998788999999999999999995432110 0011111
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCC-CCCCCccccccccccCCCCccccCCCCCCc
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP-PPSSPVSTRSEASEMGSDHTSAASPSTANT 327 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (458)
. ......+.+--..|..+.|+++|+++++-.--++++||++....+.. ++.+...
T Consensus 261 d-p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~l----------------------- 316 (433)
T KOG1354|consen 261 D-PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYL----------------------- 316 (433)
T ss_pred C-CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhH-----------------------
Confidence 1 01122333344678899999999999998888999999976432211 1000000
Q ss_pred ccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCce--eeEEEecCCCCeEEEee
Q 012712 328 DVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHV--VNCIEPHPHSTVLASSG 404 (458)
Q Consensus 328 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--v~~~~~s~~~~~l~s~~ 404 (458)
...+..+.....--.-..++| +.++.++++|+....+++|++..|... .++...... +..+ ..-+.+.+++
T Consensus 317 --r~kLc~lYEnD~IfdKFec~~-sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g 390 (433)
T KOG1354|consen 317 --RSKLCSLYENDAIFDKFECSW-SGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSG 390 (433)
T ss_pred --HHHHHHHhhccchhheeEEEE-cCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeecCC
Confidence 000000111111111345677 889999999999999999997666433 233322221 1111 1123444455
Q ss_pred cCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 405 IESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 405 ~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
......+|- ........+...+|+|....+|.+..++ +++|
T Consensus 391 ~r~~~~~~v-------d~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 391 KRKRDEISV-------DALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred Ccccccccc-------chhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 444422221 1111223466678999999888876653 4443
No 212
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=5.4e-19 Score=147.07 Aligned_cols=306 Identities=14% Similarity=0.143 Sum_probs=218.6
Q ss_pred ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEE
Q 012712 100 HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHF 178 (458)
Q Consensus 100 ~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iw 178 (458)
+..|.+.|..+.|.. .|..|++++.|..|.+||.......... ..+|...|....|-|.. ..-+++++.||.+++=
T Consensus 138 L~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred ccCCCCccceeeecc--cCceeeccCccceEEeehhhccCccccc-ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 478999999999999 9999999999999999999887766543 56898889888898853 3568999999999987
Q ss_pred eCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 179 DLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 179 d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
.+.....+. .....+ +.++|.-++..|+.+.-|.+++.|+.+.-+|++......... | ....
T Consensus 215 ~i~~t~~~e~t~rl~~--------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--------c-r~~~ 277 (559)
T KOG1334|consen 215 EILETGYVENTKRLAP--------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--------C-READ 277 (559)
T ss_pred eeccccceecceeccc--------ccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--------e-eccC
Confidence 764333322 222111 566889999999988999999999999999998875322211 0 0000
Q ss_pred cccccceeEEEeCCCCc-EEEEecCC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCcee
Q 012712 258 GDEQVGITGLAFSDQSE-LLVSYNDE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQV 335 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~-~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (458)
....-....++..|... .+++++.+ .+++||.+.-.....- .....-+...
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n---------------------------~~~~~f~p~h 330 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN---------------------------GVLDKFCPHH 330 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc---------------------------chhhhcCCcc
Confidence 00113567888888765 66666644 6899997653211100 0000112222
Q ss_pred ecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec--CC----------eEEE-EeecCCc--eeeEEEe-cCCCCe
Q 012712 336 YKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK--GG----------ELIR-VIEADRH--VVNCIEP-HPHSTV 399 (458)
Q Consensus 336 ~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~----------~~~~-~~~~~~~--~v~~~~~-s~~~~~ 399 (458)
+.. ..+..|++++| +.++.-|.+.-.|-.|+++.-. .| ..+. .+++|.. .|..+-| -|...+
T Consensus 331 l~~-d~~v~ITgl~Y-sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 331 LVE-DDPVNITGLVY-SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccc-cCcccceeEEe-cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 333 34456999999 8777666666678889999542 22 2222 3778864 4666654 588899
Q ss_pred EEEeecCCcEEEecCCccccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 400 LASSGIESDIKILTPNAADRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 400 l~s~~~d~~i~iw~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
+++|++=|.|.||+-.+++.+.+.... .-|.++.-+|--..||+++-|..|+||-
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 999999999999999999988654433 3589999999999999999999999995
No 213
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.6e-18 Score=144.55 Aligned_cols=329 Identities=17% Similarity=0.201 Sum_probs=221.9
Q ss_pred CcEEEEEccccccccccccc----cccccccceEEeeeeeEeecCCCceEEEEEecCCCEE-EEecCCCeEEEEECCCcc
Q 012712 20 ALVDVWLRELGQLSTRNFAL----RRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDIL-ISGSDDRRVILWDWKTER 94 (458)
Q Consensus 20 ~~i~iw~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~i~iwd~~~~~ 94 (458)
..|+||++..|+-++...+. ......+...++++++.|. |...-+.|..+|||+|+ |||...-.|++||+.+-.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 45899999988777653331 2222223334456666665 78888999999999875 566778899999998655
Q ss_pred eeeeeccCCCcce-eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712 95 VKLSFHSGHNDNV-FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (458)
Q Consensus 95 ~~~~~~~~~~~~i-~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 173 (458)
.... ......+ .-.-.+. |-..++.-..|.+|.+-..- +..... .++ ..-..++++.-... |++++...
T Consensus 86 LKFE--RhlDae~V~feiLsD--D~SK~v~L~~DR~IefHak~-G~hy~~-RIP---~~GRDm~y~~~scD-ly~~gsg~ 155 (703)
T KOG2321|consen 86 LKFE--RHLDAEVVDFEILSD--DYSKSVFLQNDRTIEFHAKY-GRHYRT-RIP---KFGRDMKYHKPSCD-LYLVGSGS 155 (703)
T ss_pred eeee--ecccccceeEEEecc--chhhheEeecCceeeehhhc-Ceeeee-ecC---cCCccccccCCCcc-EEEeecCc
Confidence 4332 2223333 3333343 55556666667777654321 111111 111 22345666654423 45555667
Q ss_pred eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
.|+-+++++|..+..+.. ....++++..++- ..+|++|+.+|.|..||.+.......+.....+..
T Consensus 156 evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~-hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s--- 221 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFET----------DSGELNVVSINEE-HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS--- 221 (703)
T ss_pred ceEEEEcccccccccccc----------ccccceeeeecCc-cceEEecccCceEEEecchhhhhheeeecccccCC---
Confidence 799999999998887764 3457899999997 56999999999999999999877665444322111
Q ss_pred CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
.........|+++.|+.+|-.+++|+ .|.++|||+++..
T Consensus 222 -~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------------------------------------- 261 (703)
T KOG2321|consen 222 -HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------------------------------------- 261 (703)
T ss_pred -CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---------------------------------------
Confidence 11112234599999999999999988 6789999999742
Q ss_pred ceeecCccceeeeeEEEEecCC-CcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPK-CEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI 411 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i 411 (458)
......|.....|..+.|...+ ++.+++. +...++|||-.+|+....+..- ..++.+++-|++.++.++-+++.+..
T Consensus 262 pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 262 PLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCccee
Confidence 2334456666668888883333 3345444 4578999999999999888743 45999999999999999999888877
Q ss_pred ecCC
Q 012712 412 LTPN 415 (458)
Q Consensus 412 w~~~ 415 (458)
|=+.
T Consensus 340 yyiP 343 (703)
T KOG2321|consen 340 YYIP 343 (703)
T ss_pred EEcc
Confidence 6544
No 214
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.6e-17 Score=139.74 Aligned_cols=334 Identities=10% Similarity=0.104 Sum_probs=214.3
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEe---
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISG--- 79 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--- 79 (458)
..+++++|+++|.+. +..++|++..++..+.+ .. ...+.++.|||.|.+|.|=
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt---------------------~~--~~~~~~L~fSP~g~yL~T~e~~ 94 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLC---------------------VE--LKKTYDLLFSPKGNYLLTWEPW 94 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEE---------------------ec--cceeeeeeeccccccccccccc
Confidence 456888898888776 77899999997753311 11 1268899999999998762
Q ss_pred --cC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 80 --SD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 80 --~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
.. ...+++|+++++.....+....... +++.|++ |..+. .--..+.+.+|+..+.+... -.-|...
T Consensus 95 ~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~--dEsl~-arlv~nev~f~~~~~f~~~~---~kl~~~~ 167 (566)
T KOG2315|consen 95 AIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSI--DESLA-ARLVSNEVQFYDLGSFKTIQ---HKLSVSG 167 (566)
T ss_pred ccccCCCCCCCceeeeeeccceehhheehhhhcC-ccccccc--chhhh-hhhhcceEEEEecCCcccee---eeeeccc
Confidence 11 2457899999965554443333333 6889997 65443 33334689999987754433 2336778
Q ss_pred eEEEEEcCCC-CeEEEE-----ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC--
Q 012712 153 AHKLAIEPGS-PHVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS-- 224 (458)
Q Consensus 153 v~~~~~~~~~-~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-- 224 (458)
|+.+.++|.. +..+++ .+.-+.+++|........+....... ....-..+.|++.+..+|+.++.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------Fkadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------FKADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------cccceeEEEeccCCceEEEEEEEee
Confidence 9999999973 333333 34456799998763332222211110 11122457788764445544432
Q ss_pred ---------CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---CcEEEEEccCC
Q 012712 225 ---------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND---EFIYLFTQDMG 292 (458)
Q Consensus 225 ---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~i~i~~~~~~ 292 (458)
+.+++++++.... ..+.-...++|.++.|+|+++-+++... -++.+||++..
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s----------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGES----------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cCCCccccccceEEEEEecCce----------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 2357777776322 1122234789999999999987665542 37999998752
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEE
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFI 369 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~i 369 (458)
++..+.... -+++-| +|.|++|+.++-+ |.|.+
T Consensus 305 ---------------------------------------~v~df~egp----RN~~~f-np~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 305 ---------------------------------------PVFDFPEGP----RNTAFF-NPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred ---------------------------------------EeEeCCCCC----ccceEE-CCCCCEEEEeecCCCCCceEE
Confidence 222222111 234555 9999999977654 89999
Q ss_pred EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec------CCcEEEecCCcccccccccccccEEEEEEecC
Q 012712 370 WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAADRATLPTNIEQVCFSIYSAD 437 (458)
Q Consensus 370 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d 437 (458)
||+.+.+++..+.... -+-+.|+|||++++|+.. |+.++||+..+....... .......+.|-|-
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~-f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM-FKSELLQVEWRPF 411 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh-hhHhHhheeeeec
Confidence 9999999888887654 456799999999998864 788999998765443211 1114566666653
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=2.8e-18 Score=154.06 Aligned_cols=233 Identities=15% Similarity=0.098 Sum_probs=152.8
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
+..|.+||..... .. .+..|...+...+|+|+|. .|+..+.+ ..|++||+++++....... .
T Consensus 183 ~~~i~i~d~dg~~-~~--~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----------~ 247 (429)
T PRK01742 183 PYEVRVADYDGFN-QF--IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASF-----------R 247 (429)
T ss_pred eEEEEEECCCCCC-ce--EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecC-----------C
Confidence 4689999986544 22 2566778899999999995 45555433 4699999988764322211 1
Q ss_pred cceEEEEECCCCCcEEEEe-cCCCeEEEE--ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 204 VNLNAIAIDPRNANLFAVA-GSDEYTRLY--DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~-~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
.....++|+|| ++.|+.+ ..+|.+.|| |+.+++. .....+...+....|+|||+.|+..+
T Consensus 248 g~~~~~~wSPD-G~~La~~~~~~g~~~Iy~~d~~~~~~----------------~~lt~~~~~~~~~~wSpDG~~i~f~s 310 (429)
T PRK01742 248 GHNGAPAFSPD-GSRLAFASSKDGVLNIYVMGANGGTP----------------SQLTSGAGNNTEPSWSPDGQSILFTS 310 (429)
T ss_pred CccCceeECCC-CCEEEEEEecCCcEEEEEEECCCCCe----------------EeeccCCCCcCCEEECCCCCEEEEEE
Confidence 12346899998 5666554 567766555 5544431 11222345677899999999877665
Q ss_pred --CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712 281 --DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (458)
Q Consensus 281 --~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l 358 (458)
++...+|+++.... ....+ .+.. ....| +|||++|
T Consensus 311 ~~~g~~~I~~~~~~~~-------------------------------------~~~~l-~~~~----~~~~~-SpDG~~i 347 (429)
T PRK01742 311 DRSGSPQVYRMSASGG-------------------------------------GASLV-GGRG----YSAQI-SADGKTL 347 (429)
T ss_pred CCCCCceEEEEECCCC-------------------------------------CeEEe-cCCC----CCccC-CCCCCEE
Confidence 34677777654211 11111 1221 23456 9999999
Q ss_pred EEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC---CcccccccccccccEEEEEEe
Q 012712 359 VSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP---NAADRATLPTNIEQVCFSIYS 435 (458)
Q Consensus 359 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~---~~~~~~~~~~~~~~v~~~~~s 435 (458)
+.++.++ +.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|.+ .......+..|.+.+..++||
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 8887655 566999888754332222 2456789999999999999998887765 344445667777788999999
Q ss_pred cC
Q 012712 436 AD 437 (458)
Q Consensus 436 ~d 437 (458)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 85
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=135.51 Aligned_cols=277 Identities=18% Similarity=0.247 Sum_probs=190.2
Q ss_pred CCCceEEEEEecCC--CEEEEecCCCeEEEEECCCcceeeee-----ccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 60 HRGCVNTVSFNTDG--DILISGSDDRRVILWDWKTERVKLSF-----HSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 60 h~~~v~~~~~s~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
-...|.+++|.-++ ..|...+.+..+..+.+......... ......+|..++.. | ..|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---d-g~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---D-GTLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---C-CEEEEEecCCcEEE
Confidence 34578888887665 45666657777888887766654432 23456677777764 3 46788888999999
Q ss_pred eecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 133 AQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 133 w~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
|....+.. .....+..+ ..+..+.-++..++++++|+.. ..+.+||+++.+.+..-...+... -+..-...+++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~-L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDR-LGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcc-ccceeeeeecc
Confidence 99885431 111112222 5567777788888888889999 889999999884433322211111 11112234455
Q ss_pred EEECCC-CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712 209 IAIDPR-NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (458)
Q Consensus 209 ~~~~p~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (458)
+.|-|. ....|++++.-+.+++||.+.++ .+|.++.|.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR------------------------RPV~~fd~~----------------- 246 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQR------------------------RPVAQFDFL----------------- 246 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccC------------------------cceeEeccc-----------------
Confidence 666552 13566666666666666666432 233333332
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeE
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRI 367 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i 367 (458)
++ .+.++.. .|+|+++++|..-|.+
T Consensus 247 ----------------------------------------------------E~--~is~~~l-~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 247 ----------------------------------------------------EN--PISSTGL-TPSGNFIYTGNTKGQL 271 (412)
T ss_pred ----------------------------------------------------cC--cceeeee-cCCCcEEEEecccchh
Confidence 22 2677776 8999999999999999
Q ss_pred EEEEecCCeEEEE-eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCC
Q 012712 368 FIWKKKGGELIRV-IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADY 438 (458)
Q Consensus 368 ~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~ 438 (458)
..||+..++.... +.+-.+.|+++..+|.+++||++|-|..+||+|+.+.+++.-..-...++.+-+.++-
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 9999999998877 8888999999999999999999999999999999997666544455567777776554
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.8e-17 Score=130.91 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=177.5
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeC-
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL- 180 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~- 180 (458)
..++|+|.+|++ |...+|.+.....|.||.....+ ......+..|...|+.+.|+|.. +.|++++.|..-++|..
T Consensus 9 ~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecC--CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccC
Confidence 457899999999 99999999999999999988777 55556789999999999999998 67899999999999998
Q ss_pred CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc
Q 012712 181 RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE 260 (458)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (458)
..++-.+.+.... .....+++.|+|. ++.|++|+.-..|.+|-.+..+- -...+++....
T Consensus 86 ~~~~WkptlvLlR--------iNrAAt~V~WsP~-enkFAVgSgar~isVcy~E~ENd-----------WWVsKhikkPi 145 (361)
T KOG1523|consen 86 SGGTWKPTLVLLR--------INRAATCVKWSPK-ENKFAVGSGARLISVCYYEQEND-----------WWVSKHIKKPI 145 (361)
T ss_pred CCCeeccceeEEE--------eccceeeEeecCc-CceEEeccCccEEEEEEEecccc-----------eehhhhhCCcc
Confidence 4444444433322 4557899999997 79999999999999998875431 11123344456
Q ss_pred ccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|.++.|+|++-+|++|+ |+..++|...-..........+-.... .-+..+..+...
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~--------------------PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKM--------------------PFGQLMSEASSS 205 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCC--------------------cHHHHHHhhccC
Confidence 78899999999999999998 567888875432221111111111000 002233334322
Q ss_pred cceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCC
Q 012712 340 RNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPH 396 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~ 396 (458)
. ..+..+.| +|+|..|+-.+.|..+.+-|..... .+..+....-+..++.|-.+
T Consensus 206 g--gwvh~v~f-s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 206 G--GWVHGVLF-SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred C--CceeeeEe-CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 2 35899998 9999999999999999999986554 34444333356666666543
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.1e-18 Score=142.94 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=150.8
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.++|+.+|..|++|+.||++|||+......+ .....|.+.|.++.|+|||++|++-+.|
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~---------------------l~e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTI---------------------LEEIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhh---------------------hhhHhhcCccccceeCCCCcEEEEecCC
Confidence 3678999999999999999999997644444 2356799999999999999999999999
Q ss_pred CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCC---eEE--EEEcCCCcEEEeecccccc---eeeeeccccccce
Q 012712 83 RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDD---RSI--VTCAADGQVRHAQILERGG---VETKLLGKHQGRA 153 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---~~l--~s~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~v 153 (458)
..+||+++++..+...- .........+.|+. |+ .++ +....-+.|+.|++..... ........-...|
T Consensus 208 -~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 208 -SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred -ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 89999999997666552 23445567788887 65 332 3333456677766643322 1111122233579
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
.+++.+++| ++++.|+.||.|.+++..+.+..+..+.. |..-|+.+.|+|+ .+++++.+.+....+..+
T Consensus 285 Ssl~VS~dG-kf~AlGT~dGsVai~~~~~lq~~~~vk~a---------H~~~VT~ltF~Pd-sr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 285 SSLAVSDDG-KFLALGTMDGSVAIYDAKSLQRLQYVKEA---------HLGFVTGLTFSPD-SRYLASVSSDNEAAVTKL 353 (398)
T ss_pred eeEEEcCCC-cEEEEeccCCcEEEEEeceeeeeEeehhh---------heeeeeeEEEcCC-cCcccccccCCceeEEEE
Confidence 999999999 78999999999999999888776655422 6668999999998 789999999988888887
Q ss_pred CCC
Q 012712 234 RKY 236 (458)
Q Consensus 234 ~~~ 236 (458)
.-.
T Consensus 354 ~vd 356 (398)
T KOG0771|consen 354 AVD 356 (398)
T ss_pred eec
Confidence 653
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=4.9e-18 Score=143.19 Aligned_cols=196 Identities=13% Similarity=0.141 Sum_probs=133.8
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC--cEEEEecCCcEEEEEccCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS--ELLVSYNDEFIYLFTQDMGL 293 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~i~i~~~~~~~ 293 (458)
+.-++.|-.-|.+.+.|....+....+... ....+..++++.|-|.+ .++++-..+.+++||.....
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~-----------r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~ 253 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----------RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC 253 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhc-----------ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc
Confidence 456777888899999988764322211110 01124689999999864 56677778899999874321
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEec
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKK 373 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~ 373 (458)
.... ........+....+..........++..+.--.. .|...+| +|||++||+.+.||.+||||..
T Consensus 254 ~~t~----------p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 254 GATA----------PSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred cCCC----------CcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeecc
Confidence 1110 0011111111111111111111122222222222 4888998 9999999999999999999999
Q ss_pred CCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEe
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYS 435 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s 435 (458)
+.+++..++..-+...|++|||||++|++|++|-.|.||.+...+.+ .-.+|...|..|+|.
T Consensus 321 t~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 321 TQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 98888888877788999999999999999999999999999988776 557888999999998
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.8e-16 Score=127.35 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=143.1
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccce
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGV 141 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~ 141 (458)
-.+..++|++.-..+|++..|-.|++|+-.. .+...+.......|++++|-|. .++.|+.|+. +-|.+|........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCccccc
Confidence 4578899998767788999999999999766 4445554556778999999994 4456777776 55899987532211
Q ss_pred ------------eeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 142 ------------ETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 142 ------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
+....++| .+|+++.|++|| ..+++++. |..|.+||..++..+..... ..+.+.-
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~----------glgg~sl 243 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPK----------GLGGFSL 243 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCccccccc----------CCCceee
Confidence 11113344 689999999999 56777765 57899999999987665521 3346788
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
+.|+|| +.+|+++.-|+..++|+....... ..... ..+.|....|+|+|++|.....+.-.+|.
T Consensus 244 LkwSPd-gd~lfaAt~davfrlw~e~q~wt~--------------erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 244 LKWSPD-GDVLFAATCDAVFRLWQENQSWTK--------------ERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred EEEcCC-CCEEEEecccceeeeehhccccee--------------cceec-cCCceeeeeecCCCCEEEEEEcCCceEEE
Confidence 999998 689999999999999965443211 11111 23589999999999988877766666665
Q ss_pred cc
Q 012712 289 QD 290 (458)
Q Consensus 289 ~~ 290 (458)
+.
T Consensus 308 l~ 309 (445)
T KOG2139|consen 308 LT 309 (445)
T ss_pred Ee
Confidence 44
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.6e-16 Score=142.27 Aligned_cols=235 Identities=15% Similarity=0.139 Sum_probs=152.3
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
..|.++|........ +..+...+...+|+|+|..++++.. .+..|.+||+.+++....... ...
T Consensus 179 ~~l~~~d~dg~~~~~---lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----------~~~ 244 (429)
T PRK03629 179 YELRVSDYDGYNQFV---VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----------PRH 244 (429)
T ss_pred eeEEEEcCCCCCCEE---eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----------CCC
Confidence 368888876544322 3446678899999999955444332 235799999988764333221 112
Q ss_pred eEEEEECCCCCcEEE-EecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 206 LNAIAIDPRNANLFA-VAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 206 v~~~~~~p~~~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
...+.|+||+ +.|+ +...+| .|++||+.+++.. .+ ..+...+....|+|||+.|+..++.
T Consensus 245 ~~~~~~SPDG-~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 245 NGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred cCCeEECCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCC
Confidence 4468999985 5554 445455 5888999876421 11 1123456788999999988877642
Q ss_pred --c--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712 283 --F--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (458)
Q Consensus 283 --~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l 358 (458)
. |+++++.++. ...+..... ......| +|||++|
T Consensus 308 ~g~~~Iy~~d~~~g~---------------------------------------~~~lt~~~~--~~~~~~~-SpDG~~I 345 (429)
T PRK03629 308 AGRPQVYKVNINGGA---------------------------------------PQRITWEGS--QNQDADV-SSDGKFM 345 (429)
T ss_pred CCCceEEEEECCCCC---------------------------------------eEEeecCCC--CccCEEE-CCCCCEE
Confidence 3 5555554421 112211111 1345666 9999999
Q ss_pred EEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCc---EEEecCCcccccccccccccEEEE
Q 012712 359 VSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESD---IKILTPNAADRATLPTNIEQVCFS 432 (458)
Q Consensus 359 ~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~---i~iw~~~~~~~~~~~~~~~~v~~~ 432 (458)
+..+.+ ..|++||+.+++.. .+... .......|+|||++|+.++.++. +.++++++.....+..|.+.+..+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p 423 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFP 423 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCc
Confidence 876543 36888999877643 33321 22356789999999999887764 778888777777777788889999
Q ss_pred EEecC
Q 012712 433 IYSAD 437 (458)
Q Consensus 433 ~~s~d 437 (458)
+|+|-
T Consensus 424 ~Wsp~ 428 (429)
T PRK03629 424 AWSPY 428 (429)
T ss_pred ccCCC
Confidence 99983
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=9.4e-17 Score=144.59 Aligned_cols=234 Identities=10% Similarity=0.044 Sum_probs=151.0
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
..|.+||...... ..+ ..+...+...+|+| |++.|+..+.+ ..|.+|++.+++... +..+.+...+..|+
T Consensus 184 ~~l~i~D~~g~~~-~~l-t~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g~~~~---l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNP-QTI-LRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATGQREL---VASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCc-eEe-ecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCCCEEE---eccCCCCccCceEC
Confidence 4699999865443 444 45677899999999 99999987643 469999998766433 33334445678999
Q ss_pred CCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCe--EEEEecC
Q 012712 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEY--TRLYDIR 234 (458)
Q Consensus 160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~--i~i~d~~ 234 (458)
|+|..++++.+.+| .|++||+.+++...... +.......+|+|| +..++..+ .+|. |+++|+.
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-----------~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-----------HFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-----------CCCCccceEECCC-CCEEEEEECCCCCceEEEEECC
Confidence 99976666666665 59999998876433221 1112456899998 55555444 4554 6666665
Q ss_pred CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC---cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
+++.. .+. .........+|+|+|+.|+..+ ++ .|.+|++.++..
T Consensus 325 ~g~~~---------------~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---------------- 372 (433)
T PRK04922 325 GGSAE---------------RLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---------------- 372 (433)
T ss_pred CCCeE---------------Eee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------------
Confidence 54321 011 1122344689999999988764 22 489999876421
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCce
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
..+..... .....| +|||++|+..+.+ +.|+++++ ++...+.+..+.+.
T Consensus 373 -----------------------~~Lt~~~~---~~~p~~-spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~~~~g~ 424 (433)
T PRK04922 373 -----------------------RTLTPGSL---DESPSF-APNGSMVLYATREGGRGVLAAVST-DGRVRQRLVSADGE 424 (433)
T ss_pred -----------------------EECCCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEEcccCCCC
Confidence 11111111 233466 9999988876653 46888887 45556666666677
Q ss_pred eeEEEecC
Q 012712 388 VNCIEPHP 395 (458)
Q Consensus 388 v~~~~~s~ 395 (458)
+...+|+|
T Consensus 425 ~~~p~wsp 432 (433)
T PRK04922 425 VREPAWSP 432 (433)
T ss_pred CCCCccCC
Confidence 88888887
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=3.6e-16 Score=140.05 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=153.0
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
..|.+||.+.... ..+ ..+...+...+|+| ||+.|+..+. +..|.+|++.+++.... ...........|+
T Consensus 179 ~~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~~~~l---~~~~~~~~~~~~S 251 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGAVRQV---ASFPRHNGAPAFS 251 (429)
T ss_pred eeEEEEcCCCCCC-EEe-ecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCCeEEc---cCCCCCcCCeEEC
Confidence 4799999876554 333 34667899999999 9999987542 45799999987654332 2233344568999
Q ss_pred CCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCCeEEEE--ecC
Q 012712 160 PGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDEYTRLY--DIR 234 (458)
Q Consensus 160 ~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i~--d~~ 234 (458)
|+|..++++.+.+| .|++||+++++...... ....+....|+|+ ++.|+..+ .++...+| |+.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-----------~~~~~~~~~wSPD-G~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-----------GRSNNTEPTWFPD-SQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-----------CCCCcCceEECCC-CCEEEEEeCCCCCceEEEEECC
Confidence 99966655555555 58899998876543322 1224578899998 56555444 44444444 555
Q ss_pred CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
+++.. .+ ...........|+|||++|+..+. + .+++||+.++.
T Consensus 320 ~g~~~---------------~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----------------- 366 (429)
T PRK03629 320 GGAPQ---------------RI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------------- 366 (429)
T ss_pred CCCeE---------------Ee-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----------------
Confidence 44311 11 111233557889999999887652 2 48888887642
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCe---EEEEEecCCeEEEEeecCCce
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGR---IFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~ 387 (458)
...+..... .....| +|||++|+.++.++. ++++++ +|+....+.+|.+.
T Consensus 367 ----------------------~~~Lt~~~~---~~~p~~-SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~ 419 (429)
T PRK03629 367 ----------------------VQVLTDTFL---DETPSI-APNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ 419 (429)
T ss_pred ----------------------eEEeCCCCC---CCCceE-CCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence 111211111 224556 999999998887754 677777 57777778888888
Q ss_pred eeEEEecCC
Q 012712 388 VNCIEPHPH 396 (458)
Q Consensus 388 v~~~~~s~~ 396 (458)
+...+|+|-
T Consensus 420 ~~~p~Wsp~ 428 (429)
T PRK03629 420 VKFPAWSPY 428 (429)
T ss_pred cCCcccCCC
Confidence 999999983
No 224
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1e-14 Score=115.44 Aligned_cols=240 Identities=14% Similarity=0.148 Sum_probs=162.6
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEe
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFD 179 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd 179 (458)
...+++|.. |..-++.|..+| .++|+.+.-+.........-.-.+..+-|-. + .+.+.|+.+ ..+.|||
T Consensus 7 ~~lsvs~NQ--D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~-N-~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQ--DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS-N-YLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEcc--CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh-c-eEEEecCCCCCCCCCceEEEEe
Confidence 345589998 888888887765 7999987644322211111111222222322 1 344445443 4799999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC-ccCCCccCCCCCCCcCCCcccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY-KWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
-....++..+. ...+|.++.+.++ .+++.- .+.|++|..... +.... .....
T Consensus 82 D~k~~~i~el~-----------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~------------~et~~ 134 (346)
T KOG2111|consen 82 DLKERCIIELS-----------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHV------------IETRS 134 (346)
T ss_pred cccCcEEEEEE-----------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheee------------eeccc
Confidence 66666666665 4457999999985 444443 568999998743 22211 01111
Q ss_pred ccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 259 DEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
......++.-..+..+||.-+ -|.|.+-|+...+. .....+
T Consensus 135 -NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~------------------------------------~~p~~I 177 (346)
T KOG2111|consen 135 -NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP------------------------------------NAPSII 177 (346)
T ss_pred -CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc------------------------------------CCceEE
Confidence 122344444444556777766 45799999876321 134677
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCe-EEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGR-IFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
..|.+. |.+++. ..+|..+|+++..|+ |||||..+|+++.+++-. ...|.+++|||+..+||++|+-|+|+|+.
T Consensus 178 ~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 178 NAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 889886 888988 999999999999997 799999999999998642 35799999999999999999999999998
Q ss_pred CCcc
Q 012712 414 PNAA 417 (458)
Q Consensus 414 ~~~~ 417 (458)
+...
T Consensus 255 l~~~ 258 (346)
T KOG2111|consen 255 LRDT 258 (346)
T ss_pred eecC
Confidence 8753
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.6e-15 Score=122.10 Aligned_cols=238 Identities=13% Similarity=0.077 Sum_probs=153.3
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCC-CEEEEecC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDG-DILISGSD 81 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~-~~l~s~~~ 81 (458)
+++++.-.-+|++..|-.|||||-+. +... .++ .-...|+|++|-|.+ .-|+.|..
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t~pt---------------------~Lks~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-TCPT---------------------KLKSVSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-CCCc---------------------eecchhhcceeEEEeccCCcceeeeeec
Confidence 34444444577788899999999875 3331 132 234689999999955 67777777
Q ss_pred CCeEEEEECCCcceee------------ee-ccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEEeecccccceeeeecc
Q 012712 82 DRRVILWDWKTERVKL------------SF-HSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRHAQILERGGVETKLLG 147 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~------------~~-~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~vw~~~~~~~~~~~~~~ 147 (458)
.| |.+|..+...... .+ ..+| .+|++++|.+ ||..+++++. |..|.+||..++...... .
T Consensus 162 ~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg~~~pL~--~ 235 (445)
T KOG2139|consen 162 AG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTGQKIPLI--P 235 (445)
T ss_pred ce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCCCccccc--c
Confidence 55 9999875321110 01 1344 6899999999 9999999886 678999999998876642 2
Q ss_pred ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe
Q 012712 148 KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY 227 (458)
Q Consensus 148 ~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 227 (458)
.-.+.+.-+.|+||+ ..|++++-|+..++|+....-....... ..+.|...+|+|++..+|++++..-.
T Consensus 236 ~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt~erw~l----------gsgrvqtacWspcGsfLLf~~sgsp~ 304 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWTKERWIL----------GSGRVQTACWSPCGSFLLFACSGSPR 304 (445)
T ss_pred cCCCceeeEEEcCCC-CEEEEecccceeeeehhcccceecceec----------cCCceeeeeecCCCCEEEEEEcCCce
Confidence 345678889999999 6788899999999996554332222221 33478999999997666777665544
Q ss_pred EEEEecCCCccCCCccCCC------CCCCcCCCccc---cccccceeEEEeCCCCcEEEEecCC
Q 012712 228 TRLYDIRKYKWDGSTDFGQ------PADYFCPPNLI---GDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
+ |.+..........-.. ++......... .--.+.+.+++|.|.|.+||+.-.+
T Consensus 305 l--ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 305 L--YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred E--EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 4 4433221111100000 00000000000 1114678999999999999987643
No 226
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=4.3e-14 Score=120.53 Aligned_cols=317 Identities=13% Similarity=0.163 Sum_probs=204.3
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-----C-----CCcE
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-----A-----DGQV 130 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-----~-----dg~i 130 (458)
..+++..++|++|+++|.+.. ..++|++...+..+.... .. .++++.|+| -+.+|.+-- . .-.+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP--~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVE--LK-KTYDLLFSP--KGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEec--cc-eeeeeeecc--cccccccccccccccCCCCCCCce
Confidence 345778899999998887654 679999998886555542 22 889999999 888887521 1 2457
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
++|+++++...... ...... -++..|++|. . +++--..+.+.+|++...+....-- +...+..+.
T Consensus 108 ~v~~vet~~~~s~~-q~k~Q~-~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~kl-----------~~~~i~~f~ 172 (566)
T KOG2315|consen 108 LVYNVETGVQRSQI-QKKMQN-GWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQHKL-----------SVSGITMLS 172 (566)
T ss_pred eeeeeccceehhhe-ehhhhc-Ccccccccch-h-hhhhhhcceEEEEecCCccceeeee-----------eccceeeEE
Confidence 79999884333221 111222 2688999987 3 3443445789999987733221111 444688899
Q ss_pred ECCC-CCcEEEE-----ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcE-EE-Eec--
Q 012712 211 IDPR-NANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSEL-LV-SYN-- 280 (458)
Q Consensus 211 ~~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~-~~~-- 280 (458)
++|. ....+++ .+.-+.|++|.......... + ..+.+. ...-..+.|++-|.- |+ +.+
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~------~---a~ksFF---kadkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP------V---ANKSFF---KADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccch------h---hhcccc---ccceeEEEeccCCceEEEEEEEee
Confidence 9985 2334443 45667899998873321110 0 011111 233456778887752 22 211
Q ss_pred C---------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEe
Q 012712 281 D---------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFF 351 (458)
Q Consensus 281 ~---------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 351 (458)
| .++++++++.. .....+. ..+ .|.++.|
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~--------------------------------------s~~V~L~-k~G--PVhdv~W- 278 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGE--------------------------------------SVSVPLL-KEG--PVHDVTW- 278 (566)
T ss_pred cCCCccccccceEEEEEecCc--------------------------------------eEEEecC-CCC--CceEEEE-
Confidence 1 13777776521 1111121 122 4899999
Q ss_pred cCCCcEEE--EecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCccccccccccc
Q 012712 352 GPKCEYVV--SGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNI 426 (458)
Q Consensus 352 s~~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~ 426 (458)
+|+++-++ .|-.-..+.|||+ .+.++..+. .++-+++-|+|.|++|+.+|-+ |.+-|||+.+.+++.-.. .
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a 354 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK-A 354 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc-c
Confidence 99997655 4566789999998 567776663 5677899999999999887764 789999999865543222 2
Q ss_pred ccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712 427 EQVCFSIYSADYWWSKSQNF------SCSILLFEWL 456 (458)
Q Consensus 427 ~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~ 456 (458)
..-+-+.|+|||.+++|++. |+.++||+|.
T Consensus 355 ~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 355 ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 23456789999999988764 6889999984
No 227
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=8.8e-15 Score=115.85 Aligned_cols=237 Identities=14% Similarity=0.192 Sum_probs=157.6
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCc--ceeEEEEccCCCCeEEEE-EcCC------CcEEEee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVT-CAAD------GQVRHAQ 134 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s-~~~d------g~i~vw~ 134 (458)
..+++|+.|..-++.|..+| .+||+.+.-+...+. ..+.+ .+..+-| -.++|+- |+.+ ..+.|||
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLf----R~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLF----RSNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhh----hhceEEEecCCCCCCCCCceEEEEe
Confidence 44599999999999888877 899998764332221 11222 2333334 3345554 3332 4699999
Q ss_pred cccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 135 ILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
=...+++.. + ....+|.++.+.++. +++. .++.|.+|... ..+....+.... ....+-+++-..
T Consensus 82 D~k~~~i~e--l-~f~~~I~~V~l~r~r---iVvv-l~~~I~VytF~~n~k~l~~~et~~--------NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 82 DLKERCIIE--L-SFNSEIKAVKLRRDR---IVVV-LENKIYVYTFPDNPKLLHVIETRS--------NPKGLCSLCPTS 146 (346)
T ss_pred cccCcEEEE--E-EeccceeeEEEcCCe---EEEE-ecCeEEEEEcCCChhheeeeeccc--------CCCceEeecCCC
Confidence 544444443 2 356899999999864 3433 35789999987 444444433221 111233333222
Q ss_pred CCCcEEEE-ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCc-EEEEEcc
Q 012712 214 RNANLFAV-AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEF-IYLFTQD 290 (458)
Q Consensus 214 ~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~-i~i~~~~ 290 (458)
. ..+|+. |-.-|.|++-|+...+.. +......|...|.+++.+.+|.++|+++ .|+ |+|||..
T Consensus 147 ~-k~~LafPg~k~GqvQi~dL~~~~~~-------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 147 N-KSLLAFPGFKTGQVQIVDLASTKPN-------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred C-ceEEEcCCCccceEEEEEhhhcCcC-------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 2 334443 446689999999876531 2456778999999999999999999999 454 9999999
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
++. .+..++.......|.+++| ||+..+||++++.|+++||
T Consensus 213 ~g~--------------------------------------~l~E~RRG~d~A~iy~iaF-Sp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 213 DGT--------------------------------------LLQELRRGVDRADIYCIAF-SPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred CCc--------------------------------------EeeeeecCCchheEEEEEe-CCCccEEEEEcCCCeEEEE
Confidence 854 3444444334446999999 9999999999999999999
Q ss_pred EecC
Q 012712 371 KKKG 374 (458)
Q Consensus 371 d~~~ 374 (458)
.+..
T Consensus 254 ~l~~ 257 (346)
T KOG2111|consen 254 SLRD 257 (346)
T ss_pred Eeec
Confidence 9865
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.5e-17 Score=137.81 Aligned_cols=226 Identities=15% Similarity=0.213 Sum_probs=182.6
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCe
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRR 84 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~ 84 (458)
-|+.+|+.|+.|+..|.|-.+|..++++... +. -...|..+.|-.+.+++|++-. ..
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---------------------i~-v~Etv~Dv~~LHneq~~AVAQK-~y 192 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---------------------IN-VMETVRDVTFLHNEQFFAVAQK-KY 192 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeee---------------------ee-hhhhhhhhhhhcchHHHHhhhh-ce
Confidence 3778999999999999999999999887733 22 3467899999988888888755 67
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (458)
+.||| ..|..++.+ ..| ..|..+.|.| .--+|++++..|.++.-|+..++.+.. +..-.+.+..++-+|-+ -
T Consensus 193 ~yvYD-~~GtElHCl-k~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~--~~t~~G~~~vm~qNP~N-a 264 (545)
T KOG1272|consen 193 VYVYD-NNGTELHCL-KRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVAS--IRTGAGRTDVMKQNPYN-A 264 (545)
T ss_pred EEEec-CCCcEEeeh-hhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHH--HHccCCccchhhcCCcc-c
Confidence 99999 457776776 333 5799999999 888899999999999999999988766 55566788889999987 6
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccC
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (458)
++-+|...|+|.+|.....+++..+.+ +.++|.++++.++ |+++++.+.|..++|||++.......
T Consensus 265 Vih~GhsnGtVSlWSP~skePLvKiLc----------H~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~ql~t--- 330 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEPLVKILC----------HRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFYQLHT--- 330 (545)
T ss_pred eEEEcCCCceEEecCCCCcchHHHHHh----------cCCCcceEEECCC-CcEEeecccccceeEeeeccccccce---
Confidence 788899999999999998888766665 6668999999997 79999999999999999998753221
Q ss_pred CCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQ 289 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~ 289 (458)
... ..+...+++|..| +||.+..+.+.+|.-
T Consensus 331 -----------~~t--p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 331 -----------YRT--PHPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred -----------eec--CCCcccccccccc-ceeeecCCeeeeehh
Confidence 111 2356677887766 677777788999953
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3.9e-16 Score=140.63 Aligned_cols=234 Identities=13% Similarity=0.057 Sum_probs=150.4
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (458)
..|.+||...... .. +..+...+.+.+|+|++. .|+..+. +..|++||+.+++...... ...
T Consensus 184 ~~l~i~D~~g~~~-~~--lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~-----------~~g 248 (433)
T PRK04922 184 YALQVADSDGYNP-QT--ILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS-----------FRG 248 (433)
T ss_pred EEEEEECCCCCCc-eE--eecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc-----------CCC
Confidence 3588899854333 22 555677889999999995 4554443 3469999998876533221 111
Q ss_pred ceEEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-
Q 012712 205 NLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND- 281 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 281 (458)
...+..|+|++..++++.+.+| .|++||+.+++.. ....+.......+|+|||+.|+..++
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----------------~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----------------RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECC
Confidence 2457899998544555555555 5999999876521 11122233467899999998887763
Q ss_pred -Cc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEE
Q 012712 282 -EF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYV 358 (458)
Q Consensus 282 -~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l 358 (458)
+. ++++++.++. .+.+..+.. .....+| +|||++|
T Consensus 313 ~g~~~iy~~dl~~g~---------------------------------------~~~lt~~g~--~~~~~~~-SpDG~~I 350 (433)
T PRK04922 313 GGRPQIYRVAASGGS---------------------------------------AERLTFQGN--YNARASV-SPDGKKI 350 (433)
T ss_pred CCCceEEEEECCCCC---------------------------------------eEEeecCCC--CccCEEE-CCCCCEE
Confidence 23 6666665431 111111111 1235677 9999999
Q ss_pred EEecCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEE
Q 012712 359 VSGSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFS 432 (458)
Q Consensus 359 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~ 432 (458)
+..+.++ .|++||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.++....+..+.+.+..+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p 428 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREP 428 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCC
Confidence 8765432 6999999877654 443 22245577999999988776653 46888888776666666666678888
Q ss_pred EEec
Q 012712 433 IYSA 436 (458)
Q Consensus 433 ~~s~ 436 (458)
+|||
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 8887
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=1.4e-15 Score=137.27 Aligned_cols=235 Identities=13% Similarity=0.070 Sum_probs=149.2
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
..|.++|...... .. +..|...+...+|+|+|..++++.. .+..|.+||+.+++...... ....
T Consensus 182 ~~l~~~d~dg~~~-~~--lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-----------~~g~ 247 (435)
T PRK05137 182 KRLAIMDQDGANV-RY--LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-----------FPGM 247 (435)
T ss_pred eEEEEECCCCCCc-EE--EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-----------CCCc
Confidence 3688888754333 22 5567788999999999954444332 24689999998886533221 2224
Q ss_pred eEEEEECCCCCcEEEEecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-
Q 012712 206 LNAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE- 282 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 282 (458)
+...+|+||+..++++.+.++. |++||+.+++.. ....+........|+|||+.|+..++.
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~Lt~~~~~~~~~~~spDG~~i~f~s~~~ 311 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------RLTDSPAIDTSPSYSPDGSQIVFESDRS 311 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------EccCCCCccCceeEcCCCCEEEEEECCC
Confidence 5678999985445556666655 777788765421 112233445678999999988877632
Q ss_pred ---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE
Q 012712 283 ---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV 359 (458)
Q Consensus 283 ---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~ 359 (458)
.|+++|+..+. .+.+..+.. .+....| +|||++|+
T Consensus 312 g~~~Iy~~d~~g~~---------------------------------------~~~lt~~~~--~~~~~~~-SpdG~~ia 349 (435)
T PRK05137 312 GSPQLYVMNADGSN---------------------------------------PRRISFGGG--RYSTPVW-SPRGDLIA 349 (435)
T ss_pred CCCeEEEEECCCCC---------------------------------------eEEeecCCC--cccCeEE-CCCCCEEE
Confidence 48888866421 122221111 1445667 99999998
Q ss_pred EecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC------CcEEEecCCcccccccccccccEE
Q 012712 360 SGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE------SDIKILTPNAADRATLPTNIEQVC 430 (458)
Q Consensus 360 ~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------~~i~iw~~~~~~~~~~~~~~~~v~ 430 (458)
..+.+ ..|.+||+..+. .+.+. ....+..+.|+|||++|+..+.+ ..|.++++.++....+. ..+.+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~-~~~~~~ 426 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP-TPGDAS 426 (435)
T ss_pred EEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc-CCCCcc
Confidence 76543 368888875544 33343 22346788999999988765443 25778888776655544 344577
Q ss_pred EEEEecC
Q 012712 431 FSIYSAD 437 (458)
Q Consensus 431 ~~~~s~d 437 (458)
..+|+|-
T Consensus 427 ~p~Wsp~ 433 (435)
T PRK05137 427 DPAWSPL 433 (435)
T ss_pred CcccCCC
Confidence 7888873
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.1e-15 Score=137.28 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=142.9
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
..|.++|... ..... +..+...+.+.+|+|++..++++...+ ..|.+||+.+++...... ....
T Consensus 176 ~~L~~~D~dG-~~~~~--l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-----------~~g~ 241 (427)
T PRK02889 176 YQLQISDADG-QNAQS--ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-----------FKGS 241 (427)
T ss_pred cEEEEECCCC-CCceE--eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------CCCC
Confidence 3566667633 22222 445677889999999995444433222 459999999886543221 1123
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecC--CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-- 281 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 281 (458)
....+|+||+..++++.+.+|...+|.+. .+.. . ....+........|+|||+.|+..++
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~---------------~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL---------------R-RLTQSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCc---------------E-ECCCCCCCCcCeEEcCCCCEEEEEecCC
Confidence 46789999854444567778876666543 3221 1 11122334566789999998886663
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~ 361 (458)
+...+|.+.... . ....+..... ......| +|||++|+..
T Consensus 306 g~~~Iy~~~~~~------------------------------------g-~~~~lt~~g~--~~~~~~~-SpDG~~Ia~~ 345 (427)
T PRK02889 306 GAPQIYRMPASG------------------------------------G-AAQRVTFTGS--YNTSPRI-SPDGKLLAYI 345 (427)
T ss_pred CCcEEEEEECCC------------------------------------C-ceEEEecCCC--CcCceEE-CCCCCEEEEE
Confidence 345555543210 0 0111111111 1234566 9999999877
Q ss_pred cCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccccccccEEEEEEe
Q 012712 362 SDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPTNIEQVCFSIYS 435 (458)
Q Consensus 362 ~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~v~~~~~s 435 (458)
+.++ .|++||+.+++... +..+ .......|+|||++|+.++.++ .+.+.++.......+..+.+.+...+||
T Consensus 346 s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred EccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccC
Confidence 6554 69999998876543 3322 2346789999999988776544 3555566544444455566678888888
Q ss_pred cC
Q 012712 436 AD 437 (458)
Q Consensus 436 ~d 437 (458)
|-
T Consensus 424 p~ 425 (427)
T PRK02889 424 PF 425 (427)
T ss_pred CC
Confidence 73
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=1.1e-15 Score=129.33 Aligned_cols=253 Identities=15% Similarity=0.166 Sum_probs=166.0
Q ss_pred CCeEEEEEcCCCcEEEeecccccce----eeeeccccccceEEEEE-----cCCCCeEEEEecCCCeEEEEeCCCCCccc
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGV----ETKLLGKHQGRAHKLAI-----EPGSPHVFYTCGEDGLVQHFDLRTGAATE 187 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~v~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 187 (458)
.|.+|+..-. ..+.+|+.+.+... ....+.+. ...|-+| .|.+ .-++.+-.-|.+.+.|....+..+
T Consensus 134 ~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 134 KGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred CCCEEEEecC-CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence 5666665443 36788887743222 11112211 1222233 3444 345667677889998877643333
Q ss_pred eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC---CC----------CCCcCCC
Q 012712 188 LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG---QP----------ADYFCPP 254 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~----------~~~~~~~ 254 (458)
.+. ...+.....++|+.|-|-+...|+++-.+|.+++||.....-.....+. .+ .....|.
T Consensus 210 lfn------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 210 LFN------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhh------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 222 1222245679999999987788999999999999987432111110000 00 0000111
Q ss_pred ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
....-..+.|...+|+|||++||+.+ |+.++|||..+. ...
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------------------------------------eLl 325 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------------------------------------ELL 325 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH--------------------------------------HHH
Confidence 11112245789999999999999998 558999998873 223
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCC-----------------
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPH----------------- 396 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~----------------- 396 (458)
..++..-.. ..|++| ||||+||++|++|--|.||.+...+.+..=++|...|+.++|.|-
T Consensus 326 g~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~ 402 (636)
T KOG2394|consen 326 GVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTF 402 (636)
T ss_pred HHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccc
Confidence 333333332 789999 999999999999999999999999999999999999999999830
Q ss_pred ------------------C-------------CeEEEeecCCcEEEecCCccccc
Q 012712 397 ------------------S-------------TVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 397 ------------------~-------------~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
+ -.+.+.+.|..+.+||+....+.
T Consensus 403 ~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 403 SDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred cchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 1 14678889999999999876443
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=6.7e-15 Score=132.87 Aligned_cols=235 Identities=12% Similarity=0.126 Sum_probs=151.5
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
...|.++|.+.... ..+ ..|...+...+|+| ||+.|+..+. +..|.+||+.+++... +..+.+.+...+|
T Consensus 181 ~~~l~~~d~dg~~~-~~l-t~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g~~~~---l~~~~g~~~~~~~ 253 (435)
T PRK05137 181 IKRLAIMDQDGANV-RYL-TDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETGQREL---VGNFPGMTFAPRF 253 (435)
T ss_pred ceEEEEECCCCCCc-EEE-ecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCCcEEE---eecCCCcccCcEE
Confidence 34789999865443 444 46788999999999 9999888764 4689999998775432 4445567778999
Q ss_pred cCCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec-CCC--eEEEEec
Q 012712 159 EPGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG-SDE--YTRLYDI 233 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~i~d~ 233 (458)
+|+|..++++.+.++. |++||+++++...... +........|+|| ++.++..+ .+| .|+++|+
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-----------~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-----------SPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCceEEccC-----------CCCccCceeEcCC-CCEEEEEECCCCCCeEEEEEC
Confidence 9999766667776665 7777988776533221 1223456899998 55655544 343 5778887
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCccccccc
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~ 309 (458)
..++.. .+. .....+....|+|+|+.|+.... + .|.+|++..+.
T Consensus 322 ~g~~~~---------------~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~---------------- 369 (435)
T PRK05137 322 DGSNPR---------------RIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG---------------- 369 (435)
T ss_pred CCCCeE---------------Eee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------------
Confidence 654321 111 12344567889999999887652 2 47788865421
Q ss_pred cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC------CeEEEEEecCCeEEEEeec
Q 012712 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC------GRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~ 383 (458)
.+.+.... .+....| +|||++|+..+.+ ..++++|+..++. ..+.
T Consensus 370 -----------------------~~~lt~~~---~~~~p~~-spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~- 420 (435)
T PRK05137 370 -----------------------ERILTSGF---LVEGPTW-APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP- 420 (435)
T ss_pred -----------------------eEeccCCC---CCCCCeE-CCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-
Confidence 11111111 1445667 9999998865443 3678888855544 4444
Q ss_pred CCceeeEEEecCC
Q 012712 384 DRHVVNCIEPHPH 396 (458)
Q Consensus 384 ~~~~v~~~~~s~~ 396 (458)
..+.+...+|+|-
T Consensus 421 ~~~~~~~p~Wsp~ 433 (435)
T PRK05137 421 TPGDASDPAWSPL 433 (435)
T ss_pred CCCCccCcccCCC
Confidence 2445677788873
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=4.4e-15 Score=133.33 Aligned_cols=235 Identities=11% Similarity=0.083 Sum_probs=146.9
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
..|.++|.+ +.....+ ..+...+.+.+|+| |++.|+..+.+ ..|.+||+.+++... +....+.....+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g~~~~---l~~~~g~~~~~~~S 248 (427)
T PRK02889 176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATGRRRV---VANFKGSNSAPAWS 248 (427)
T ss_pred cEEEEECCC-CCCceEe-ccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCCCEEE---eecCCCCccceEEC
Confidence 467888874 3333444 46778899999999 99999877643 359999998776543 22233456689999
Q ss_pred CCCCeEEEEecCCCeEEEEe--CCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE-EecCCCeEEEEecC--
Q 012712 160 PGSPHVFYTCGEDGLVQHFD--LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA-VAGSDEYTRLYDIR-- 234 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~i~d~~-- 234 (458)
|++..++++.+.++...+|. +..+.. ..+.. +........|+|| ++.++ +...+|...+|.+.
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~----------~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ----------SSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCc-EECCC----------CCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECC
Confidence 99966666777888766664 444432 22211 1112456789998 45555 44445666666654
Q ss_pred CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-C---cEEEEEccCCCCCCCCCCCCcccccccc
Q 012712 235 KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-E---FIYLFTQDMGLGPNPPPSSPVSTRSEAS 310 (458)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 310 (458)
+++. ..+. .........+|+|+|++|+..+. + .|++||+.++..
T Consensus 317 ~g~~---------------~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------------- 364 (427)
T PRK02889 317 GGAA---------------QRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---------------- 364 (427)
T ss_pred CCce---------------EEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------------
Confidence 3221 0011 01122345789999999887653 2 499999876421
Q ss_pred ccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC---eEEEEEecCCeEEEEeecCCce
Q 012712 311 EMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRHV 387 (458)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~ 387 (458)
..+..... .....| +|||++|+.++.++ .+++.++ +++....+..+.+.
T Consensus 365 -----------------------~~lt~~~~---~~~p~~-spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~ 416 (427)
T PRK02889 365 -----------------------TALTDTTR---DESPSF-APNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGD 416 (427)
T ss_pred -----------------------EEccCCCC---ccCceE-CCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCC
Confidence 11111111 234566 99999998776543 3556666 56666677667777
Q ss_pred eeEEEecCC
Q 012712 388 VNCIEPHPH 396 (458)
Q Consensus 388 v~~~~~s~~ 396 (458)
+...+|+|-
T Consensus 417 ~~~p~wsp~ 425 (427)
T PRK02889 417 VREPSWGPF 425 (427)
T ss_pred CCCCccCCC
Confidence 888899874
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.71 E-value=1.9e-15 Score=120.82 Aligned_cols=253 Identities=15% Similarity=0.170 Sum_probs=180.2
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE-CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD-WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
+..+++.++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+...-..+++++.+.+ +...|+.+-..|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ng 90 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNG 90 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecc
Confidence 4456678899999999999999888899999999999995 3445544444334567889999999 999999999999
Q ss_pred cEEEeecccc--cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 129 QVRHAQILER--GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 129 ~i~vw~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
++.-+.+... +....+....|...+..+.|+... ..+++.+.|..+.---.+.+..+..+.. ....
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----------~~~~ 158 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF-----------ETPA 158 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe-----------eccC
Confidence 9988876543 222233466799999999998776 6788899887765555555554433321 1112
Q ss_pred EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEE
Q 012712 207 NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIY 285 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~ 285 (458)
.++.+.- .+...|...|.|..-.+..... .+.....+|...+.+++|.|..++|.++..+ .+.
T Consensus 159 t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~-------------~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 159 SALQFDA---LYAFVGDHSGQITMLKLEQNGC-------------QLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred CCCceee---EEEEecccccceEEEEEeecCC-------------ceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 2222221 1455566666666655543321 2345567789999999999999999999866 799
Q ss_pred EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC
Q 012712 286 LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG 365 (458)
Q Consensus 286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg 365 (458)
+||+... ......+.+|... +..+.+ -+.-+.+.+++.||
T Consensus 223 ~wdigg~-------------------------------------~g~~~el~gh~~k--V~~l~~-~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 223 MWDIGGR-------------------------------------KGTAYELQGHNDK--VQALSY-AQHTRQLISCGEDG 262 (404)
T ss_pred EEeccCC-------------------------------------cceeeeeccchhh--hhhhhh-hhhheeeeeccCCC
Confidence 9998753 2234456667664 677766 66778899999999
Q ss_pred eEEEEEe
Q 012712 366 RIFIWKK 372 (458)
Q Consensus 366 ~i~iwd~ 372 (458)
.|.+|++
T Consensus 263 ~i~~w~m 269 (404)
T KOG1409|consen 263 GIVVWNM 269 (404)
T ss_pred eEEEEec
Confidence 9999998
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.70 E-value=7e-14 Score=117.87 Aligned_cols=323 Identities=17% Similarity=0.163 Sum_probs=209.6
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC--------
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-------- 128 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg-------- 128 (458)
+..-.-++..++|||.|.+|++....+ |.+|.-.....+..+ .| ..|..+.|+| .+++|.+-+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~-~~V~~~~fSP--~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RH-PDVKYLDFSP--NEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred ccccCcchhheeecCcchheehhhccc-eEEccccchhheeee--ec-CCceecccCc--ccceeeeeccCCccChhhcc
Confidence 333556889999999999999887765 999998877765555 23 5699999999 999999866543
Q ss_pred -------cEEEeecccccceeeeeccccccceE-EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712 129 -------QVRHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (458)
Q Consensus 129 -------~i~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (458)
.+.+||+.++..+..........-.. -+.|+-+. .+++-. ....++++++ ++.... ......
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~-~p~~~l------ 171 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEE-HPFKNL------ 171 (561)
T ss_pred CCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcccc-Cchhhc------
Confidence 48999999888766532222221133 57788776 333322 3356899997 433221 111111
Q ss_pred eeecceEEEEECCC-CCcEEEE-----ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc
Q 012712 201 MTVVNLNAIAIDPR-NANLFAV-----AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE 274 (458)
Q Consensus 201 ~~~~~v~~~~~~p~-~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 274 (458)
....+...+|+|. ++..|+. .+..+.+++|.+..+..... ..+. +..-..+.|.+.|+
T Consensus 172 -r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t------------k~lf---k~~~~qLkW~~~g~ 235 (561)
T COG5354 172 -RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT------------KNLF---KVSGVQLKWQVLGK 235 (561)
T ss_pred -cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee------------eeeE---eecccEEEEecCCc
Confidence 1235788889986 2233333 45678899998875543221 1111 22335688999998
Q ss_pred EEEEec------------CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccce
Q 012712 275 LLVSYN------------DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNC 342 (458)
Q Consensus 275 ~l~~~~------------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (458)
+|++-. +.+++|+++... .+.....-.+
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---------------------------------------~i~V~~~~~~- 275 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITER---------------------------------------SIPVEKDLKD- 275 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccc---------------------------------------ccceeccccc-
Confidence 776421 234777777631 1111112233
Q ss_pred eeeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcc
Q 012712 343 VTVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAA 417 (458)
Q Consensus 343 ~~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~ 417 (458)
.|...+| .|.++.+++ |-.+..+.++|+... .... ...+.-+.+.|+|.+++++.++-| |.+-+|+..+.
T Consensus 276 -pVhdf~W-~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r 350 (561)
T COG5354 276 -PVHDFTW-EPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR 350 (561)
T ss_pred -cceeeee-cccCCceeEEecccccceeecccccc-eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence 3888998 999887765 457788999998544 3333 344556788999999999998766 67999998876
Q ss_pred cccccccccccEEEEEEecCCcEEEeee------cCCceEEEEEe
Q 012712 418 DRATLPTNIEQVCFSIYSADYWWSKSQN------FSCSILLFEWL 456 (458)
Q Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~------~d~~i~~w~~~ 456 (458)
....-.-......-+.|||||.++.+.. .|..|.||++-
T Consensus 351 f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 351 FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 4433122222345567999998876643 57889999973
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.70 E-value=5.8e-14 Score=118.33 Aligned_cols=336 Identities=12% Similarity=0.129 Sum_probs=217.0
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+.+||.|++|++....+ |.+|.-..+..+.+ +. ...|..+.|||.++||.|=+..
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---------------------~~--~~~V~~~~fSP~~kYL~tw~~~ 92 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---------------------FR--HPDVKYLDFSPNEKYLVTWSRE 92 (561)
T ss_pred heeecCcchheehhhccc-eEEccccchhheee---------------------ee--cCCceecccCcccceeeeeccC
Confidence 467899999999888554 88999886654422 22 2468899999999999985543
Q ss_pred ---------------CeEEEEECCCcceeeeeccCCCcc--ee-EEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712 83 ---------------RRVILWDWKTERVKLSFHSGHNDN--VF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 83 ---------------~~i~iwd~~~~~~~~~~~~~~~~~--i~-~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 144 (458)
..+.+||..++..+..+. .-..+ .+ -+.|+- +..++|-.. ...+.++++ ++.... .
T Consensus 93 pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~--~D~y~ARvv-~~sl~i~e~-t~n~~~-~ 166 (561)
T COG5354 93 PIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSI--DDKYVARVV-GSSLYIHEI-TDNIEE-H 166 (561)
T ss_pred CccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeee--cchhhhhhc-cCeEEEEec-CCcccc-C
Confidence 248999999999888873 33333 33 678887 777776543 346899997 332211 1
Q ss_pred eccc-cccceEEEEEcCCCC-eEEEE-----ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 145 LLGK-HQGRAHKLAIEPGSP-HVFYT-----CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 145 ~~~~-~~~~v~~~~~~~~~~-~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
.+.. ....+....|+|.+. ..|+. ....+.+++|.+..+..+..-...+. .-..+.|.+. ++
T Consensus 167 p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~----------~~~qLkW~~~-g~ 235 (561)
T COG5354 167 PFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKV----------SGVQLKWQVL-GK 235 (561)
T ss_pred chhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEee----------cccEEEEecC-Cc
Confidence 1111 135678888999742 22332 35678899998886655443332211 1235677776 44
Q ss_pred EEEEec-----------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--C-Cc
Q 012712 218 LFAVAG-----------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--D-EF 283 (458)
Q Consensus 218 ~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~-~~ 283 (458)
++++-- ....+++++++.... .......++|...+|.|.++.+++.+ . -.
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i----------------~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI----------------PVEKDLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc----------------ceeccccccceeeeecccCCceeEEecccccc
Confidence 443311 124577888774431 11113467899999999988776655 3 36
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
+.++|++.. ....+.... -+.+.| +|.+++++.++-
T Consensus 300 ~s~~~lr~N---------------------------------------l~~~~Pe~~----rNT~~f-sp~~r~il~agF 335 (561)
T COG5354 300 VSVFDLRGN---------------------------------------LRFYFPEQK----RNTIFF-SPHERYILFAGF 335 (561)
T ss_pred eeecccccc---------------------------------------eEEecCCcc----cccccc-cCcccEEEEecC
Confidence 889988763 111111111 233445 999999998776
Q ss_pred C---CeEEEEEecCCeEEE-EeecCCceeeEEEecCCCCeEEEee------cCCcEEEecCCcccccccccccccEEEEE
Q 012712 364 C---GRIFIWKKKGGELIR-VIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADRATLPTNIEQVCFSI 433 (458)
Q Consensus 364 d---g~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~~~~v~~~~ 433 (458)
| |.+.+||......+. .+.+.+ ..-+.|+||++++.+.. .|..|+||++...+.. ..+.+.
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-------el~~~~ 406 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-------ELTNIT 406 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-------hhhhcc
Confidence 5 789999987654443 565543 45678999999887653 3788999999876543 455677
Q ss_pred EecCCcEEEeeecCC
Q 012712 434 YSADYWWSKSQNFSC 448 (458)
Q Consensus 434 ~s~d~~~l~s~~~d~ 448 (458)
|.|.|++..+.+.+.
T Consensus 407 W~p~~~~~ttsSs~~ 421 (561)
T COG5354 407 WDPSGQYVTTSSSCP 421 (561)
T ss_pred ccCCcccceeeccCC
Confidence 888777765555443
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=1.3e-13 Score=120.25 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=171.3
Q ss_pred CeEEEEEC--CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----CCcEEEeecccc-cce-eeeeccccccceE
Q 012712 83 RRVILWDW--KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHAQILER-GGV-ETKLLGKHQGRAH 154 (458)
Q Consensus 83 ~~i~iwd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw~~~~~-~~~-~~~~~~~~~~~v~ 154 (458)
+.|.+|++ ++++....-..........++++| ++++|.+... ++.|..|.+... ..+ .............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 68988888 344332211112345567789999 9999988876 578999998765 222 2111222334556
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCCC-Cccceeeecc---cCCCCcceeecceEEEEECCCCCcEEEE-ecCCCeEE
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTG-AATELFTCRP---IDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDEYTR 229 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~ 229 (458)
.++++|++..++++.-.+|.|.++++... .......... ..............++.++|++ +++++ .-....|+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVY 169 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEE
Confidence 79999999666666667899999999874 3322211110 0000001123356789999984 55554 44556799
Q ss_pred EEecCCCc--cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccc
Q 012712 230 LYDIRKYK--WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 230 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
+|++.... +.. ............+.++|+|+++++.... .+.|.+|++........
T Consensus 170 ~~~~~~~~~~l~~------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~-------- 229 (345)
T PF10282_consen 170 VYDIDDDTGKLTP------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT-------- 229 (345)
T ss_dssp EEEE-TTS-TEEE------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE--------
T ss_pred EEEEeCCCceEEE------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee--------
Confidence 99997654 110 0111122345678999999999887766 44799998873211000
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEec--CC--eEEE
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKK--GG--ELIR 379 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~--~~~~ 379 (458)
..+....+. +.........+++ +|||++|+++. ..+.|.+|++. ++ +.+.
T Consensus 230 -----------------------~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 230 -----------------------EIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp -----------------------EEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred -----------------------EEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 000011110 0111112567777 99999988755 45789999993 23 3344
Q ss_pred EeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCC--cccccc
Q 012712 380 VIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPN--AADRAT 421 (458)
Q Consensus 380 ~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~--~~~~~~ 421 (458)
.+.........++++|+|++|+++. .++.|.+|+++ ++.+..
T Consensus 286 ~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 286 TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 4444445589999999999998876 56789999764 555443
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=2.4e-15 Score=118.46 Aligned_cols=108 Identities=14% Similarity=0.202 Sum_probs=88.3
Q ss_pred eeeEEEEecCCCcEEEE--ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCccc
Q 012712 344 TVKGVNFFGPKCEYVVS--GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAAD 418 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~ 418 (458)
.|.+++| +|+|+.+|+ |..++.|.+||++ ++.+..+. ...++.+.|+|+|++|++++.+ |.|.+||..+.+
T Consensus 61 ~I~~~~W-sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 61 PIHDVAW-SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred ceEEEEE-CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 3899999 999998754 4567899999995 67776664 4567899999999999998754 679999999877
Q ss_pred ccccccccccEEEEEEecCCcEEEeeec------CCceEEEEEe
Q 012712 419 RATLPTNIEQVCFSIYSADYWWSKSQNF------SCSILLFEWL 456 (458)
Q Consensus 419 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~------d~~i~~w~~~ 456 (458)
......|. .++.++|||||+++++++. |+.++||++.
T Consensus 137 ~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 KISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 77655554 4789999999999998764 7889999974
No 240
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.9e-14 Score=122.92 Aligned_cols=280 Identities=13% Similarity=0.129 Sum_probs=190.4
Q ss_pred CCCCCCCe-EEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCC--CceEEEEEecCCCEEEEecC
Q 012712 5 SNNNNNKR-ARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHR--GCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 5 ~~~~~~~~-l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~ 81 (458)
--+|||++ +|||...-.|++||+..-.+ .|.-|. ..|.-.-++.|-..++--..
T Consensus 58 k~s~DGqY~lAtG~YKP~ikvydlanLSL-----------------------KFERhlDae~V~feiLsDD~SK~v~L~~ 114 (703)
T KOG2321|consen 58 KVSPDGQYLLATGTYKPQIKVYDLANLSL-----------------------KFERHLDAEVVDFEILSDDYSKSVFLQN 114 (703)
T ss_pred EecCCCcEEEEecccCCceEEEEccccee-----------------------eeeecccccceeEEEeccchhhheEeec
Confidence 35899998 67788899999999983221 234443 44555556666555666667
Q ss_pred CCeEEEEECCCcce-eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 82 DRRVILWDWKTERV-KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 82 d~~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
|++|.+-.-- |.. ...+ ...-..++++. -..-|+.++....|.-++++.+.-+.. +....+.++++..++
T Consensus 115 DR~IefHak~-G~hy~~RI----P~~GRDm~y~~--~scDly~~gsg~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~ 185 (703)
T KOG2321|consen 115 DRTIEFHAKY-GRHYRTRI----PKFGRDMKYHK--PSCDLYLVGSGSEVYRLNLEQGRFLNP--FETDSGELNVVSINE 185 (703)
T ss_pred Cceeeehhhc-Ceeeeeec----CcCCccccccC--CCccEEEeecCcceEEEEccccccccc--cccccccceeeeecC
Confidence 7887765422 221 1111 12234566665 233344444445788889988877655 555668999999999
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCCccceeeeccc-CCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPI-DDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
-. .+|++|+.+|.|..||.++...+..+..... ....+......|+++.|+.+ +-.+++|+.+|.+.|||+++.+..
T Consensus 186 ~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 186 EH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred cc-ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCce
Confidence 88 7899999999999999999888777654332 11222223345999999987 799999999999999999987621
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHT 317 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (458)
...-.....+|..+.|.+. +..+++.....++|||-.+++..
T Consensus 264 --------------~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~---------------------- 307 (703)
T KOG2321|consen 264 --------------LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPM---------------------- 307 (703)
T ss_pred --------------eecccCCccceeeecccccCCCceEEecchHHhhhcccccCCce----------------------
Confidence 1112223567899999876 45676666668999998885432
Q ss_pred cccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 318 SAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
..+.... .++.+|+ -|++.+++++.+++.+..|=+..
T Consensus 308 ----------------asiEpt~---~lND~C~-~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 308 ----------------ASIEPTS---DLNDFCF-VPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ----------------eeccccC---CcCceee-ecCCceEEEecCCCcceeEEccc
Confidence 2222111 2677787 68888999999888888776654
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.68 E-value=1.4e-12 Score=113.86 Aligned_cols=279 Identities=14% Similarity=0.143 Sum_probs=165.4
Q ss_pred CceEEEEEecCCCEEEEecC----CCeEEEEECCCc--ce--eeeeccCCCcceeEEEEccCCCCeEEEEEcC-CCcEEE
Q 012712 62 GCVNTVSFNTDGDILISGSD----DRRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVRH 132 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~v 132 (458)
..-..++++|++++|.+... ++.|..|++... +. +.+. .........++++| ++++|+++.. +|.|.+
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~--~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDP--DGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECT--TSSEEEEEETTTTEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEec--CCCEEEEEEccCCeEEE
Confidence 44567889999999988866 579999988764 22 2222 11334556899999 9999988875 899999
Q ss_pred eecccccceeee--ecc----------ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCc
Q 012712 133 AQILERGGVETK--LLG----------KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRN 199 (458)
Q Consensus 133 w~~~~~~~~~~~--~~~----------~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~ 199 (458)
+++.....+... .+. .......++.++|+++.++++.-....|.+|++..... +.........
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~---- 189 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVP---- 189 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECS----
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccc----
Confidence 999875433221 110 12245688999999965555554556899999977652 2111111111
Q ss_pred ceeecceEEEEECCCCCcEEEEecCCCeEEEEecC--CCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR--KYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
.......++|+|++....++...++.|.++++. .++....... ...............++++|||++|.
T Consensus 190 --~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 190 --PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-------STLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp --TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-------ESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred --cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-------eeccccccccCCceeEEEecCCCEEE
Confidence 223468899999855555666778899999988 2221110000 00000001123678899999999988
Q ss_pred Eec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 278 SYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 278 ~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
++. .+.|.+|+++..... ...+..+..... ..+.+++ +|+|
T Consensus 261 vsnr~~~sI~vf~~d~~~g~----------------------------------l~~~~~~~~~G~--~Pr~~~~-s~~g 303 (345)
T PF10282_consen 261 VSNRGSNSISVFDLDPATGT----------------------------------LTLVQTVPTGGK--FPRHFAF-SPDG 303 (345)
T ss_dssp EEECTTTEEEEEEECTTTTT----------------------------------EEEEEEEEESSS--SEEEEEE--TTS
T ss_pred EEeccCCEEEEEEEecCCCc----------------------------------eEEEEEEeCCCC--CccEEEE-eCCC
Confidence 776 447999998532100 111222221111 2577888 9999
Q ss_pred cEEEEec-CCCeEEEEEec--CCeEEEEee-cCCceeeEEEe
Q 012712 356 EYVVSGS-DCGRIFIWKKK--GGELIRVIE-ADRHVVNCIEP 393 (458)
Q Consensus 356 ~~l~~~~-~dg~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~ 393 (458)
++|+++. .++.|.+|++. +|.+...-. ..-....|+.|
T Consensus 304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 304 RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 9999876 45789999874 666544332 12234556655
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1e-16 Score=132.95 Aligned_cols=191 Identities=11% Similarity=0.195 Sum_probs=166.4
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcE
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFI 284 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i 284 (458)
..+.+.++.+ |.+++.|+..|.|..+|..+.++...+. -...|..+.|..+.+++|++....+
T Consensus 131 GPY~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~----------------v~Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEIN----------------VMETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred CCeeeeecCC-ccEEEecCCccceeeeecccceeeeeee----------------hhhhhhhhhhhcchHHHHhhhhceE
Confidence 4577888886 7899999999999999999987643322 2456888999999999999999999
Q ss_pred EEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC
Q 012712 285 YLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC 364 (458)
Q Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d 364 (458)
++||-.. ..+..++.+.. +..+.| -|..-+|++++..
T Consensus 194 yvYD~~G---------------------------------------tElHClk~~~~---v~rLeF-LPyHfLL~~~~~~ 230 (545)
T KOG1272|consen 194 YVYDNNG---------------------------------------TELHCLKRHIR---VARLEF-LPYHFLLVAASEA 230 (545)
T ss_pred EEecCCC---------------------------------------cEEeehhhcCc---hhhhcc-cchhheeeecccC
Confidence 9999653 34455555554 788888 8988889999999
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEe
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s 443 (458)
|.++--|+.+|+.+..+....+.+..|+-+|-+..+-+|...|+|.+|++...+.+ .+..|.++|.++++.++|.|+||
T Consensus 231 G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaT 310 (545)
T KOG1272|consen 231 GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMAT 310 (545)
T ss_pred CceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEee
Confidence 99999999999999999988889999999999999999999999999999988766 88999999999999999999999
Q ss_pred eecCCceEEEEE
Q 012712 444 QNFSCSILLFEW 455 (458)
Q Consensus 444 ~~~d~~i~~w~~ 455 (458)
.+.|..++|||.
T Consensus 311 tG~Dr~~kIWDl 322 (545)
T KOG1272|consen 311 TGLDRKVKIWDL 322 (545)
T ss_pred cccccceeEeee
Confidence 999999999996
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.67 E-value=6.1e-13 Score=111.41 Aligned_cols=223 Identities=13% Similarity=0.129 Sum_probs=148.5
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCcceeecceEEEE-ECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
+.||..+++. ..|.|.+||..+.+..+.--..+.. ..+......+..-+. |++-++.+++..+. |...+.+...+
T Consensus 275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 3455444443 3477999998876543321111111 000000111111111 45555778887775 56666665443
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC-cEEEEEccCCCCCCCCCCCCccccccccccCC
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
- .+.-++.+.|.-..+.-+++-++.+. ++ .+-+||..+++
T Consensus 352 ~-----------------~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--------------------- 393 (668)
T COG4946 352 Y-----------------SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--------------------- 393 (668)
T ss_pred e-----------------eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------------
Confidence 2 12223456677777776666666666 33 79999998742
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 394 (458)
.+.+...-+ .|.++.. +|+|++++.+.....+.+.|+++++....-+...+-|+.++||
T Consensus 394 ------------------~kr~e~~lg--~I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~ 452 (668)
T COG4946 394 ------------------VKRIEKDLG--NIEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWH 452 (668)
T ss_pred ------------------EEEeeCCcc--ceEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEc
Confidence 233333333 3888998 9999999999999999999999998766556666789999999
Q ss_pred CCCCeEEEeecCC----cEEEecCCcccccccccccccEEEEEEecCCcEEEe
Q 012712 395 PHSTVLASSGIES----DIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 395 ~~~~~l~s~~~d~----~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 443 (458)
|+++++|.+--+| .|+++|..+++...+......-.+.+|.|||++|..
T Consensus 453 ~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 453 PNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 9999999886665 689999999988877777777788999999988754
No 244
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=6.8e-13 Score=121.54 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=123.0
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (458)
++++.-++++|+--+.|.+|+...-+.. ..+.||.+.|.++.++.||.++++.|.|+++
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p---------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi 199 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKP---------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSI 199 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCc---------------------ceecccCCceEEEEEccCCcEEEEEecCcce
Confidence 4566677899999999999998822211 1578999999999999999999999999999
Q ss_pred EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-cceEEEEEcCCCCe
Q 012712 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ-GRAHKLAIEPGSPH 164 (458)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~ 164 (458)
++|++++.+......-+|...|..++|.| + .+++++.|.+.++|+.... .+. .+.+|. ..+..++..++. .
T Consensus 200 RlW~i~s~~~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~~-~l~--~y~~h~g~~iw~~~~~~~~-~ 271 (967)
T KOG0974|consen 200 RLWPIDSREVLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNGT-QLE--VYDEHSGKGIWKIAVPIGV-I 271 (967)
T ss_pred eeeecccccccCcccccccceeEEEEecc--c--eeEEeccceEEEEEecccc-eeh--hhhhhhhcceeEEEEcCCc-e
Confidence 99999998876644468999999999998 5 9999999999999976433 232 256665 568899998887 7
Q ss_pred EEEEecCCCeEEEEeCCC
Q 012712 165 VFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~ 182 (458)
.+++++.|+.+++||+..
T Consensus 272 ~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEeeccCcchhhhhhhc
Confidence 899999999999999764
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=132.73 Aligned_cols=278 Identities=12% Similarity=0.080 Sum_probs=183.2
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC----CCCeEEEEEcCCCcEEEeec
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF----TDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~s~~~dg~i~vw~~ 135 (458)
|-+++++.++-. ++|+.|.. ..|.+||+..+..+..+...+-..+. .+. -.+.+++++..-+.+..=+.
T Consensus 6 ~~~~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~ 78 (967)
T KOG0974|consen 6 SLGPLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEA 78 (967)
T ss_pred ccccccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecch
Confidence 345555655543 56765544 56999999988765444222222222 110 02345555554444333222
Q ss_pred ccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRN 215 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 215 (458)
.... .......+....+.... ..++..+.+..+.+||...+............ .-....-+.++++
T Consensus 79 ~~~~------~~~~s~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~------~l~~~~~~g~s~~- 144 (967)
T KOG0974|consen 79 SNQI------IERFSDWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERC------TLYSSLIIGDSAE- 144 (967)
T ss_pred hhhh------hhhccccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceE------EEEeEEEEeccCc-
Confidence 1111 11122334444445555 46777788889999998877655444322110 0001112233443
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGP 295 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~ 295 (458)
.-++++|+.-+.|.+|+....+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn---------------------------------------------------------- 166 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDN---------------------------------------------------------- 166 (967)
T ss_pred EEEEEeccccccEEEEeccccC----------------------------------------------------------
Confidence 4556666666666666654111
Q ss_pred CCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC
Q 012712 296 NPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 375 (458)
....+.+|++. +.++.+ +.||+++++.++|.++|+|++++.
T Consensus 167 ------------------------------------~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 167 ------------------------------------KPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred ------------------------------------CcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccc
Confidence 11145678875 889998 999999999999999999999998
Q ss_pred eEEE-EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccccccc-EEEEEEecCCcEEEeeecCCceEEE
Q 012712 376 ELIR-VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQ-VCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 376 ~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
+... +.-+|+..|..+.|+|+ .++|++.|-+.++|+....++..+.+|..+ ++.++..++..+++|++.|+.+++|
T Consensus 208 ~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~ 285 (967)
T KOG0974|consen 208 EVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLW 285 (967)
T ss_pred cccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhh
Confidence 8776 66789999999999998 899999999999998887777777778776 9999999999999999999999999
Q ss_pred EEec
Q 012712 454 EWLV 457 (458)
Q Consensus 454 ~~~~ 457 (458)
+++-
T Consensus 286 ~l~~ 289 (967)
T KOG0974|consen 286 DLNG 289 (967)
T ss_pred hhhc
Confidence 9763
No 246
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=7.3e-14 Score=113.80 Aligned_cols=252 Identities=10% Similarity=0.046 Sum_probs=175.8
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee----eccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK----LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (458)
-...|..++|.-....+.+..++.+..+..+.+......... .......+|..++... + .|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g--~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-G--TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC-C--EEEEEecCCcEEEE
Confidence 345677788875223345555556667777776655443321 2333455666666543 3 47888889999999
Q ss_pred eCCCCCcc----ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--CeEEEEecCCCccCCCccCCCCCCCcC
Q 012712 179 DLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--EYTRLYDIRKYKWDGSTDFGQPADYFC 252 (458)
Q Consensus 179 d~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (458)
..+.+... ..+. ....+..+.-+|..+.++++|+.. ..+.+||+...+.
T Consensus 131 ~~k~~d~hss~l~~la-----------~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q-------------- 185 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLA-----------TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ-------------- 185 (412)
T ss_pred eccCCccccccceeee-----------cCCceeeeccCCCCCceEecCchhcccceeeeeccccee--------------
Confidence 98855421 1111 122456666677667788888888 7788898876431
Q ss_pred CCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 253 PPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
|....--|+.
T Consensus 186 -----------iw~aKNvpnD----------------------------------------------------------- 195 (412)
T KOG3881|consen 186 -----------IWSAKNVPND----------------------------------------------------------- 195 (412)
T ss_pred -----------eeeccCCCCc-----------------------------------------------------------
Confidence 1111111111
Q ss_pred ceeecCccceeeeeEEEEecCC--CcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcE
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPK--CEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDI 409 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i 409 (458)
.-+-.-+.+++++.| -+. ...+|+++.-+.+++||...+ +++..+.....+++++...|+++++++|..-+.+
T Consensus 196 ---~L~LrVPvW~tdi~F-l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 196 ---RLGLRVPVWITDIRF-LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred ---cccceeeeeecccee-cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 111112234566666 454 678999999999999999865 5778887778899999999999999999999999
Q ss_pred EEecCCccccc--ccccccccEEEEEEecCCcEEEeeecCCceEEEEEe
Q 012712 410 KILTPNAADRA--TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 410 ~iw~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~~ 456 (458)
..+|+..+... .+.+..+.|+++..+|.+.+||+++-|..|+|+|.-
T Consensus 272 ~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 272 AKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred heecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 99999998776 367788889999999999999999999999999863
No 247
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=3.2e-14 Score=112.03 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=86.5
Q ss_pred ccceeEEEeCCCCcEEEEec---CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec
Q 012712 261 QVGITGLAFSDQSELLVSYN---DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK 337 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (458)
.++|.+++|+|+|+.++... ...+.+||++. ..+..+.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~---------------------------------------~~i~~~~ 99 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG---------------------------------------KKIFSFG 99 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCcc---------------------------------------cEeEeec
Confidence 45799999999998876553 33799999863 2233333
Q ss_pred CccceeeeeEEEEecCCCcEEEEecC---CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec------CCc
Q 012712 338 GHRNCVTVKGVNFFGPKCEYVVSGSD---CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI------ESD 408 (458)
Q Consensus 338 ~~~~~~~i~~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------d~~ 408 (458)
. . .+..+.| +|+|++|++++. .|.|.+||+.+.+.+.+.. |. .++.++|+|||++|+++.. |+.
T Consensus 100 ~--~--~~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng 172 (194)
T PF08662_consen 100 T--Q--PRNTISW-SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNG 172 (194)
T ss_pred C--C--CceEEEE-CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceecccc
Confidence 2 1 2567888 999999998764 4779999999888887775 33 4789999999999998864 788
Q ss_pred EEEecCCcccc
Q 012712 409 IKILTPNAADR 419 (458)
Q Consensus 409 i~iw~~~~~~~ 419 (458)
++||+..+..+
T Consensus 173 ~~Iw~~~G~~l 183 (194)
T PF08662_consen 173 FKIWSFQGRLL 183 (194)
T ss_pred EEEEEecCeEe
Confidence 99999876543
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.63 E-value=3.4e-14 Score=113.77 Aligned_cols=260 Identities=12% Similarity=0.191 Sum_probs=167.5
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC------------CCceEEEEEec
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH------------RGCVNTVSFNT 71 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~s~ 71 (458)
+-|..+|.+||||..+|.|-++.-+..... .++....++.| ...|..+.|.+
T Consensus 31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~ 94 (433)
T KOG1354|consen 31 VEFDHYGERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD 94 (433)
T ss_pred EEeecccceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence 457889999999999999999977632210 12222333333 35689999998
Q ss_pred CC--CEEEEecCCCeEEEEECCCcce-----------------------------------eeeeccCCCcceeEEEEcc
Q 012712 72 DG--DILISGSDDRRVILWDWKTERV-----------------------------------KLSFHSGHNDNVFQAKIMP 114 (458)
Q Consensus 72 ~~--~~l~s~~~d~~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~i~~~~~~~ 114 (458)
++ ..++..+.|.+|++|.+..... ...+...|+--|+++.+..
T Consensus 95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence 76 3566677899999998754321 1122346888899999998
Q ss_pred CCCCeEEEEEcCCCcEEEeeccccccee-eeecc-----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--
Q 012712 115 FTDDRSIVTCAADGQVRHAQILERGGVE-TKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-- 186 (458)
Q Consensus 115 ~~~~~~l~s~~~dg~i~vw~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-- 186 (458)
|.+.++++. |=.|.+|+++-..... ...++ .-+.-|++..|+|...++|+-.+..|+|++-|++.....
T Consensus 175 --D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 175 --DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred --ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 999888876 5689999986543221 11122 234568999999988788888899999999999964332
Q ss_pred --ceeeecccCCCCc--ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc----
Q 012712 187 --ELFTCRPIDDRRN--YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG---- 258 (458)
Q Consensus 187 --~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---- 258 (458)
+.+..+.....+. ..-...|..+.|++. |+++++-.. -+|++||+..... |+..+.......
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~--------pv~t~~vh~~lr~kLc 321 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAK--------PVETYPVHEYLRSKLC 321 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCC--------cceEEeehHhHHHHHH
Confidence 1111111100000 001235788999997 788887554 4799999965431 211111111100
Q ss_pred -----ccccceeEEEeCCCCcEEEEec-CCcEEEEEccCC
Q 012712 259 -----DEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMG 292 (458)
Q Consensus 259 -----~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~ 292 (458)
..-..-..++|+.++..+++|+ .+-.++|+...+
T Consensus 322 ~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 322 SLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 0011224678999999999999 457899996654
No 249
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.9e-13 Score=123.86 Aligned_cols=235 Identities=15% Similarity=0.110 Sum_probs=143.6
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
.|.++|...... .. +..+...+....|+|+|..++++...+ ..|.+||+.+++...... .....
T Consensus 180 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-----------~~g~~ 245 (430)
T PRK00178 180 TLQRSDYDGARA-VT--LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-----------FEGLN 245 (430)
T ss_pred EEEEECCCCCCc-eE--EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-----------CCCCc
Confidence 377777754432 22 445667889999999995544444333 368999998886543221 11124
Q ss_pred EEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (458)
....|+|++..++++...+| .|+++|+.+++.. ....+........|+|||+.|+..++ +
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------~lt~~~~~~~~~~~spDg~~i~f~s~~~g 309 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----------------RVTNHPAIDTEPFWGKDGRTLYFTSDRGG 309 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----------------EcccCCCCcCCeEECCCCCEEEEEECCCC
Confidence 46899998544444555555 5888898876421 11112334556789999998876653 2
Q ss_pred --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~ 360 (458)
.|+++++.++... . ..+.+.. .....| +|||++|+.
T Consensus 310 ~~~iy~~d~~~g~~~------------------------------------~-lt~~~~~----~~~~~~-Spdg~~i~~ 347 (430)
T PRK00178 310 KPQIYKVNVNGGRAE------------------------------------R-VTFVGNY----NARPRL-SADGKTLVM 347 (430)
T ss_pred CceEEEEECCCCCEE------------------------------------E-eecCCCC----ccceEE-CCCCCEEEE
Confidence 4777777653210 0 0111111 223456 999999987
Q ss_pred ecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEEEE
Q 012712 361 GSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFSIY 434 (458)
Q Consensus 361 ~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~~~ 434 (458)
.+.+ + .|.++|+.+++.. .+.. ........|+|||++|+..+.+ ..|.++++.......+..+.+.+...+|
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~w 425 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSW 425 (430)
T ss_pred EEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCcc
Confidence 6543 3 5888999877643 3322 2223356899999998876543 3577777766555455555566778888
Q ss_pred ecC
Q 012712 435 SAD 437 (458)
Q Consensus 435 s~d 437 (458)
||-
T Consensus 426 s~~ 428 (430)
T PRK00178 426 SPY 428 (430)
T ss_pred CCC
Confidence 873
No 250
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=7e-13 Score=113.14 Aligned_cols=317 Identities=13% Similarity=0.170 Sum_probs=197.7
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC-
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD- 82 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d- 82 (458)
+.+||.|.+|+|--..| |.+|--+.=..++ +|. |. .|.-+.|||..+||+|-+..
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---------------------RF~-Hp-~Vq~idfSP~EkYLVT~s~~p 271 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---------------------RFY-HP-GVQFIDFSPNEKYLVTYSPEP 271 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHH---------------------hcc-CC-CceeeecCCccceEEEecCCc
Confidence 45899999999998776 7799766433332 232 54 48899999999999986541
Q ss_pred ----------CeEEEEECCCcceeeeecc--CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc
Q 012712 83 ----------RRVILWDWKTERVKLSFHS--GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ 150 (458)
Q Consensus 83 ----------~~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~ 150 (458)
..++|||+.+|.....+.. .....-.-..||. |++++|--.. ..|.|++...-..+..+.+ ..
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki 346 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTG-NSISIYETPSFMLLDKKSL--KI 346 (698)
T ss_pred cccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc--CCceeEEecc-ceEEEEecCceeeeccccc--CC
Confidence 5799999999998887743 1222223467998 9999987776 4689998766444333222 23
Q ss_pred cceEEEEEcCCCCeEEEEecCC-----CeEEEEeCCCCCccceeeecccCCCCcceeecceE--EEEECCCCCcEEEEe-
Q 012712 151 GRAHKLAIEPGSPHVFYTCGED-----GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN--AIAIDPRNANLFAVA- 222 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l~~~- 222 (458)
..|....|+|.+ ++|+-=... ..+.+..+.+++.+..-... .|. .+-|-.+ |.+|+.-
T Consensus 347 ~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf------------nVsDckLhWQk~-gdyLcvkv 412 (698)
T KOG2314|consen 347 SGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF------------NVSDCKLHWQKS-GDYLCVKV 412 (698)
T ss_pred ccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccce------------eeeccEEEeccC-CcEEEEEE
Confidence 568889999987 555432111 23444444444333322211 122 2344443 4555432
Q ss_pred ---------cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEc
Q 012712 223 ---------GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQ 289 (458)
Q Consensus 223 ---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~ 289 (458)
+.=..+.|+.++.... | .. .-.-...|...+|.|.|..++.-+.+ ++.+|.+
T Consensus 413 dR~tK~~~~g~f~n~eIfrireKdI--------p------ve-~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~ 477 (698)
T KOG2314|consen 413 DRHTKSKVKGQFSNLEIFRIREKDI--------P------VE-VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAV 477 (698)
T ss_pred EeeccccccceEeeEEEEEeeccCC--------C------ce-eeecchheeeeeeccCCCeEEEEEccccccceeEEEe
Confidence 1122356666665542 1 11 11224678899999999877765532 5888888
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe---cCCCe
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG---SDCGR 366 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~---~~dg~ 366 (458)
.+.... ...+..+.. ...+.+.| +|.|++++.+ +..|.
T Consensus 478 e~~~~~----------------------------------~~lVk~~dk----~~~N~vfw-sPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 478 ETNIKK----------------------------------PSLVKELDK----KFANTVFW-SPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ecCCCc----------------------------------hhhhhhhcc----cccceEEE-cCCCcEEEEEEecccccc
Confidence 742111 122333332 13567777 9999999865 45789
Q ss_pred EEEEEecCCeEEEEe-ecCCceeeEEEecCCCCeEEEeec------CCcEEEecCCccc
Q 012712 367 IFIWKKKGGELIRVI-EADRHVVNCIEPHPHSTVLASSGI------ESDIKILTPNAAD 418 (458)
Q Consensus 367 i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~------d~~i~iw~~~~~~ 418 (458)
+.++|+.-.....+- ..|. ..+.+.|.|.|+|++|++. |.--+||+..+..
T Consensus 519 l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred eEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 999998643322222 1233 4678999999999999875 5567788877653
No 251
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=8.7e-13 Score=112.59 Aligned_cols=306 Identities=12% Similarity=0.094 Sum_probs=193.9
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-----------CCcEEE
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----------DGQVRH 132 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----------dg~i~v 132 (458)
=+-+.|||.|.||+|--..| |.+|--.+-..++++ .|. .|.-+.||| ..++|+|-+. ...++|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSP--NEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCC--ccceEEEecCCccccCcccCCCceEEE
Confidence 35689999999999998877 999987766666776 464 588999999 9999998653 257999
Q ss_pred eecccccceeeeeccccccce-EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE
Q 012712 133 AQILERGGVETKLLGKHQGRA-HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
||+.+|..............+ .-..|+-|+ .+++.... ..|.+|+...-.++..-.. ....|....|
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Ksl----------ki~gIr~Fsw 354 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSL----------KISGIRDFSW 354 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeeccccc----------CCccccCccc
Confidence 999999876553221122222 346889888 66666655 5688998665332211111 2235788999
Q ss_pred CCCCCcEEEEecC-----CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-----
Q 012712 212 DPRNANLFAVAGS-----DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----- 281 (458)
Q Consensus 212 ~p~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----- 281 (458)
+|. +++||-=.. -..+.+-.+.+.+.+.. ..-++-.=..+.|-.+|.+|+.--+
T Consensus 355 sP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt---------------~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 355 SPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRT---------------KNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred CCC-cceEEEEcccccCCcceEEEEecCccceeee---------------ccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 997 566653221 12234444433332111 1112222345778888998886432
Q ss_pred ---C---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 282 ---E---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 282 ---~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
+ .+.|+.++... .++..+.-.. .|...+| .|.|
T Consensus 419 ~~~g~f~n~eIfrireKd-------------------------------------Ipve~velke---~vi~FaW-EP~g 457 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKD-------------------------------------IPVEVVELKE---SVIAFAW-EPHG 457 (698)
T ss_pred cccceEeeEEEEEeeccC-------------------------------------CCceeeecch---heeeeee-ccCC
Confidence 1 24555554421 1112222111 3788898 9999
Q ss_pred cEEEEecCC---CeEEEEEecC-C---eEEEEeecCCceeeEEEecCCCCeEEEe---ecCCcEEEecCCccccc--ccc
Q 012712 356 EYVVSGSDC---GRIFIWKKKG-G---ELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNAADRA--TLP 423 (458)
Q Consensus 356 ~~l~~~~~d---g~i~iwd~~~-~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~d~~i~iw~~~~~~~~--~~~ 423 (458)
..+++-+.+ .++.+|.+++ . +++..+.. ...+.+.|+|.|++++.+ |..|.+.++|..-.... ...
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence 877754432 5788998873 2 23344432 456889999999998876 55789999998853322 333
Q ss_pred cccccEEEEEEecCCcEEEeeecC
Q 012712 424 TNIEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~~~l~s~~~d 447 (458)
. +...+.+.|.|.|+|+++++..
T Consensus 536 e-h~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 536 E-HFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred c-ccccccceECCCCCEEEEeeeh
Confidence 3 3357889999999999987754
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.8e-13 Score=123.27 Aligned_cols=233 Identities=16% Similarity=0.114 Sum_probs=141.3
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
.|.++|...... . .+..+...+....|+|+|..++++...++ .|++||+.+++....... ....
T Consensus 199 ~l~i~d~dG~~~-~--~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----------~g~~ 264 (448)
T PRK04792 199 QLMIADYDGYNE-Q--MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----------PGIN 264 (448)
T ss_pred EEEEEeCCCCCc-e--EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------CCCc
Confidence 566667644332 2 24456678889999999965555444333 588899988764332211 1123
Q ss_pred EEEEECCCCCcEEEEecCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712 207 NAIAIDPRNANLFAVAGSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (458)
...+|+||+..++++...+|. |+++|+.+++.. ....+.......+|+|||+.|+..++ +
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g 328 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----------------RITRHRAIDTEPSWHPDGKSLIFTSERGG 328 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----------------ECccCCCCccceEECCCCCEEEEEECCCC
Confidence 467999985444455666665 777788765421 11112334567899999998877653 3
Q ss_pred --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee--cCccceeeeeEEEEecCCCcEE
Q 012712 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY--KGHRNCVTVKGVNFFGPKCEYV 358 (458)
Q Consensus 283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~s~~~~~l 358 (458)
.++++|+.++. ...+ .+.. ....+| +|||++|
T Consensus 329 ~~~Iy~~dl~~g~---------------------------------------~~~Lt~~g~~----~~~~~~-SpDG~~l 364 (448)
T PRK04792 329 KPQIYRVNLASGK---------------------------------------VSRLTFEGEQ----NLGGSI-TPDGRSM 364 (448)
T ss_pred CceEEEEECCCCC---------------------------------------EEEEecCCCC----CcCeeE-CCCCCEE
Confidence 36677765531 1111 1211 233566 9999998
Q ss_pred EEecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC-C--cEEEecCCcccccccccccccEEEE
Q 012712 359 VSGSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE-S--DIKILTPNAADRATLPTNIEQVCFS 432 (458)
Q Consensus 359 ~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-~--~i~iw~~~~~~~~~~~~~~~~v~~~ 432 (458)
+..+.+ + .|.++|+.+++.. .+... .......|+|||++|+..+.+ + .+.+++.+......+..+.+.+...
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSP 442 (448)
T ss_pred EEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCC
Confidence 876543 3 5666787777543 33322 122345899999988765543 3 3777787666555566566678888
Q ss_pred EEecC
Q 012712 433 IYSAD 437 (458)
Q Consensus 433 ~~s~d 437 (458)
+|||-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 89873
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.62 E-value=1.9e-13 Score=123.89 Aligned_cols=232 Identities=16% Similarity=0.142 Sum_probs=140.2
Q ss_pred cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC--CeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 129 QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 129 ~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
.|.++|...... .. +..+...+...+|+|++..++++...+ ..|++||+.+++...... ....+
T Consensus 171 ~l~~~d~~g~~~-~~--l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-----------~~~~~ 236 (417)
T TIGR02800 171 ELQVADYDGANP-QT--ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-----------FPGMN 236 (417)
T ss_pred eEEEEcCCCCCC-EE--eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------CCCCc
Confidence 577777753332 22 445666788999999995444433222 479999998876433222 11235
Q ss_pred EEEEECCCCCcEEEEecCCC--eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C
Q 012712 207 NAIAIDPRNANLFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E 282 (458)
Q Consensus 207 ~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~ 282 (458)
.+++|+|++..++++.+.++ .|++||+.+++... ...+........|+|+|+.|+..++ +
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------l~~~~~~~~~~~~s~dg~~l~~~s~~~g 300 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----------------LTNGPGIDTEPSWSPDGKSIAFTSDRGG 300 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----------------CCCCCCCCCCEEECCCCCEEEEEECCCC
Confidence 56899998544445555544 58888887654211 1112223446789999998876653 2
Q ss_pred --cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712 283 --FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 283 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~ 360 (458)
.|+++++.++. ...+..+.. ......| +|+|++++.
T Consensus 301 ~~~iy~~d~~~~~---------------------------------------~~~l~~~~~--~~~~~~~-spdg~~i~~ 338 (417)
T TIGR02800 301 SPQIYMMDADGGE---------------------------------------VRRLTFRGG--YNASPSW-SPDGDLIAF 338 (417)
T ss_pred CceEEEEECCCCC---------------------------------------EEEeecCCC--CccCeEE-CCCCCEEEE
Confidence 47777765421 111221111 2455677 999999998
Q ss_pred ecCCC---eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC---cEEEecCCcccccccccccccEEEEEE
Q 012712 361 GSDCG---RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES---DIKILTPNAADRATLPTNIEQVCFSIY 434 (458)
Q Consensus 361 ~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~v~~~~~ 434 (458)
++.++ .|.+||+.++.. ..+... .......|+|||++|+..+.++ .+.+.+........+..+.+.+..++|
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCCCcCCCCC
Confidence 87765 789999877543 333322 2345668999999888776654 456666555444444444444555554
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.2e-13 Score=120.63 Aligned_cols=244 Identities=13% Similarity=0.091 Sum_probs=144.6
Q ss_pred CcEEEeecccccceeeeeccccccceEEEEEcCCCCe--EEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 128 GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH--VFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 128 g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
..|.+.|........ +.........-.|+|||.. ++++...+| .|.+.++.+++....... .
T Consensus 165 ~~l~~~d~dG~~~~~---lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----------~ 230 (428)
T PRK01029 165 GELWSVDYDGQNLRP---LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----------Q 230 (428)
T ss_pred ceEEEEcCCCCCceE---cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----------C
Confidence 356666665443322 4444556677899999854 233444443 578888888765443321 1
Q ss_pred cceEEEEECCCCCcEEEEecCCC----eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
......+|+||+..++++...+| .+..|++..+... .+..+...........+|+|||+.|+..
T Consensus 231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~ 298 (428)
T PRK01029 231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG------------KPRRLLNEAFGTQGNPSFSPDGTRLVFV 298 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC------------cceEeecCCCCCcCCeEECCCCCEEEEE
Confidence 13356799999544444443333 3444666543100 0111222222334567999999988876
Q ss_pred c--CCc--EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 280 N--DEF--IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 280 ~--~~~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
+ ++. ++++++... ......+..+.. .+....| +|||
T Consensus 299 s~~~g~~~ly~~~~~~~-------------------------------------g~~~~~lt~~~~--~~~~p~w-SPDG 338 (428)
T PRK01029 299 SNKDGRPRIYIMQIDPE-------------------------------------GQSPRLLTKKYR--NSSCPAW-SPDG 338 (428)
T ss_pred ECCCCCceEEEEECccc-------------------------------------ccceEEeccCCC--CccceeE-CCCC
Confidence 6 333 444444321 011122222222 2456677 9999
Q ss_pred cEEEEecCC---CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---CCcEEEecCCcccccccccccccE
Q 012712 356 EYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---ESDIKILTPNAADRATLPTNIEQV 429 (458)
Q Consensus 356 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~v 429 (458)
++|+..+.+ ..|++||+.+++... +......+....|+|||+.|+.... ...|.++++.+++...+....+.+
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~ 417 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEK 417 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcc
Confidence 998866543 479999998887643 3333345678999999998875432 357889999888777776666678
Q ss_pred EEEEEecCC
Q 012712 430 CFSIYSADY 438 (458)
Q Consensus 430 ~~~~~s~d~ 438 (458)
...+|||-.
T Consensus 418 ~~p~Ws~~~ 426 (428)
T PRK01029 418 RFPSWGAFP 426 (428)
T ss_pred cCceecCCC
Confidence 888998854
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.61 E-value=4e-13 Score=121.77 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=143.4
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEE
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~ 158 (458)
...|.++|...... ..+ ..+...+...+|+| |+++|+.+..+ ..|.+|++.+++... +..+...+.+++|
T Consensus 169 ~~~l~~~d~~g~~~-~~l-~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~ 241 (417)
T TIGR02800 169 RYELQVADYDGANP-QTI-TRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAF 241 (417)
T ss_pred cceEEEEcCCCCCC-EEe-ecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEE
Confidence 34688888764443 334 35666788999999 99999887653 479999998765433 2334455677899
Q ss_pred cCCCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE-ecCCC--eEEEEec
Q 012712 159 EPGSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV-AGSDE--YTRLYDI 233 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~~dg--~i~i~d~ 233 (458)
+|++..++++.+.++ .|++||+.++....... +........|+|+ +..|+. ...++ .|+++|+
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-----------GPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEEECCC-----------CCCCCCCEEECCC-CCEEEEEECCCCCceEEEEEC
Confidence 999966666666554 58888988775433221 1112345689998 455554 43343 5777777
Q ss_pred CCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCCccccccc
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSPVSTRSEA 309 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~ 309 (458)
.+.+.. ....+......+.|+|+|++++....+ .|.+||+.++..
T Consensus 310 ~~~~~~----------------~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--------------- 358 (417)
T TIGR02800 310 DGGEVR----------------RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--------------- 358 (417)
T ss_pred CCCCEE----------------EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---------------
Confidence 654321 111123456678999999988877633 588888765311
Q ss_pred cccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCC---eEEEEEecCCeEEEEeecCCc
Q 012712 310 SEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG---RIFIWKKKGGELIRVIEADRH 386 (458)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~ 386 (458)
..+..... .....| +|||++|+..+.++ .+++.+. +++....+..+.+
T Consensus 359 ------------------------~~l~~~~~---~~~p~~-spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g 409 (417)
T TIGR02800 359 ------------------------RVLTDTGL---DESPSF-APNGRMILYATTRGGRGVLGLVST-DGRFRARLPLGNG 409 (417)
T ss_pred ------------------------EEccCCCC---CCCceE-CCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCC
Confidence 11111111 223456 99999888776653 4555554 4555555554444
Q ss_pred eeeEEEe
Q 012712 387 VVNCIEP 393 (458)
Q Consensus 387 ~v~~~~~ 393 (458)
.+..++|
T Consensus 410 ~~~~~~w 416 (417)
T TIGR02800 410 DVREPAW 416 (417)
T ss_pred CcCCCCC
Confidence 5555555
No 256
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.60 E-value=2.7e-11 Score=102.80 Aligned_cols=273 Identities=12% Similarity=0.065 Sum_probs=167.6
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeecccccceeeeecccc---
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH--- 149 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~--- 149 (458)
++|.+.|.++++.+..+..+.... .+ ++| |++.|+.+.. +..|.+||..+.+......+..-
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 789999999999888875444333 34 899 9988877665 78999999999888766443221
Q ss_pred --ccceEEEEEcCCCCeEEEEecC-CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712 150 --QGRAHKLAIEPGSPHVFYTCGE-DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 150 --~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (458)
......++++|+|+.++++--. +..|.+.|+.+++.+..+.... ...-...+++ ..+ +-+.||
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----------~~~vy~t~e~-~~~--~~~~Dg 167 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----------CYHIFPTAND-TFF--MHCRDG 167 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEecCC-ccE--EEeecC
Confidence 2234478999999544444434 7899999999999887776421 1111112221 111 222344
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCccccc-----cccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCC
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD-----EQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPS 300 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~ 300 (458)
......+........ ....+... ...+ .|.+ +|+++....++.|++.|+........
T Consensus 168 ~~~~v~~d~~g~~~~----------~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~--- 230 (352)
T TIGR02658 168 SLAKVGYGTKGNPKI----------KPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFL--- 230 (352)
T ss_pred ceEEEEecCCCceEE----------eeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceec---
Confidence 333332222111000 00000000 0111 3455 88888877789999999755321111
Q ss_pred CCccccccccccCCCCccccCCCCCCcccccCceeecC-----ccceeeeeEEEEecCCCcEEEEec----------CCC
Q 012712 301 SPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG-----HRNCVTVKGVNFFGPKCEYVVSGS----------DCG 365 (458)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~s~~~~~l~~~~----------~dg 365 (458)
.....+.. .-.+.....+++ +|+++.++... ..+
T Consensus 231 ------------------------------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 231 ------------------------------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred ------------------------------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCC
Confidence 00111100 001111334777 99999888742 225
Q ss_pred eEEEEEecCCeEEEEeecCCceeeEEEecCCCC-eEEEee-cCCcEEEecCCcccccccc
Q 012712 366 RIFIWKKKGGELIRVIEADRHVVNCIEPHPHST-VLASSG-IESDIKILTPNAADRATLP 423 (458)
Q Consensus 366 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~d~~i~iw~~~~~~~~~~~ 423 (458)
.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+++.....
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 899999999999998874 34689999999999 777665 5788999999988766443
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.1e-13 Score=120.39 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=143.6
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-CC--cEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
..|.++|.+.... ..+ ..+...+....|+| ||+.|+..+. ++ .|.+||+.+++.... ..........+|+
T Consensus 198 ~~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~~~~l---t~~~g~~~~~~wS 270 (448)
T PRK04792 198 YQLMIADYDGYNE-QML-LRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQVREKV---TSFPGINGAPRFS 270 (448)
T ss_pred eEEEEEeCCCCCc-eEe-ecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCCeEEe---cCCCCCcCCeeEC
Confidence 3677778765543 333 45677889999999 9999887654 23 588889877654332 2222334568999
Q ss_pred CCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCC
Q 012712 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRK 235 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~ 235 (458)
|++..++++.+.++. |+++|+.+++...... +.......+|+||+..++++...++ .|+++|+.+
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~-----------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATKALTRITR-----------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCCCeEECcc-----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 999766666677775 7778888776433221 1123466789998544444444444 466667765
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
++.. .+. .........+|+|||++|+..+. + .|.++|+.++..
T Consensus 340 g~~~---------------~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----------------- 386 (448)
T PRK04792 340 GKVS---------------RLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM----------------- 386 (448)
T ss_pred CCEE---------------EEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-----------------
Confidence 5421 110 01112345689999998877653 3 356667665321
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC-C--eEEEEEecCCeEEEEeecCCcee
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC-G--RIFIWKKKGGELIRVIEADRHVV 388 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v 388 (458)
..+..... .....| +|||+.|+..+.+ | .+++++. +++..+.+..+.+.+
T Consensus 387 ----------------------~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~ 439 (448)
T PRK04792 387 ----------------------QVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEV 439 (448)
T ss_pred ----------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCc
Confidence 11111110 112346 9999988765543 3 4777776 666677776666678
Q ss_pred eEEEecCC
Q 012712 389 NCIEPHPH 396 (458)
Q Consensus 389 ~~~~~s~~ 396 (458)
...+|+|-
T Consensus 440 ~~p~Wsp~ 447 (448)
T PRK04792 440 KSPAWSPF 447 (448)
T ss_pred CCCccCCC
Confidence 88899873
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1e-12 Score=103.17 Aligned_cols=206 Identities=16% Similarity=0.220 Sum_probs=148.2
Q ss_pred CCceEEEEEec---CCC-EEEEecCCCeEEEEECCCcceeeeeccCCC------cceeEEEEccCCCCeEEEEEcCCCcE
Q 012712 61 RGCVNTVSFNT---DGD-ILISGSDDRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAADGQV 130 (458)
Q Consensus 61 ~~~v~~~~~s~---~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l~s~~~dg~i 130 (458)
+..+..+.|.. +|. .|+-+..+|.|.++.....+....+ .+-. ....++.|++ .+..++++-.+|.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~ 145 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSI 145 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeec--cCceEEEEcCCCcE
Confidence 35566777764 454 5667778899999987655543333 2211 1245778888 88889999999999
Q ss_pred EEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE
Q 012712 131 RHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA 210 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 210 (458)
.+-+.........+..+.|..++..+.|+...++++++|+.|+.+..||++.++ ...+..... +...|.++.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kv-------H~~GV~SI~ 217 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKV-------HTSGVVSIY 217 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeeccee-------eecceEEEe
Confidence 866655544444345889999999999999988999999999999999999443 122221111 566789999
Q ss_pred ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEE
Q 012712 211 IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFT 288 (458)
Q Consensus 211 ~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~ 288 (458)
-+|..+.++++|+.|-.|++||.|+... |+ ....-.+.|..+.++|. +++|+++.-+..++-+
T Consensus 218 ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl-------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDECIRVLDTRNMGK--------PL-------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cCCCCCceEEEeccccceeeeehhcccC--------cc-------ccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 9887789999999999999999996431 11 11223478999999996 4566677677777777
Q ss_pred ccCC
Q 012712 289 QDMG 292 (458)
Q Consensus 289 ~~~~ 292 (458)
...+
T Consensus 283 ~~~~ 286 (339)
T KOG0280|consen 283 SSDK 286 (339)
T ss_pred eccc
Confidence 7654
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.60 E-value=3.1e-13 Score=108.39 Aligned_cols=246 Identities=16% Similarity=0.237 Sum_probs=168.3
Q ss_pred eccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEE
Q 012712 99 FHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHF 178 (458)
Q Consensus 99 ~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iw 178 (458)
...+|.+.+++...-| ..+-+++.+.|.++++|--++...........-..+++++.+.+.. ..|+.+-..|++.-+
T Consensus 19 ~~eG~~d~vn~~~l~~--~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIP--KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEF 95 (404)
T ss_pred hhcCchhhhhhheecc--CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEE
Confidence 3478999999988888 7778999999999999975544332222222345678999999988 678999999999888
Q ss_pred eCCCC----CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 179 DLRTG----AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 179 d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
.+... ...+.+.. +...+..+-|+-. ..++++.+.|..+.---.+.+..++.+.+..+
T Consensus 96 s~sedfnkm~~~r~~~~----------h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~------- 157 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLA----------HQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRLGGYNFETP------- 157 (404)
T ss_pred Ehhhhhhhcchhhhhhh----------hhcceeeEEecCC-ceeEEEeccccceEEEeeccCCcccceEeecc-------
Confidence 65432 22222221 5567888888876 68999999998776555555544333221110
Q ss_pred ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
.+++.+.-. +...|. .+.+..-.+.. .....+
T Consensus 158 ---------~t~~~~d~~--~~fvGd~~gqvt~lr~~~------------------------------------~~~~~i 190 (404)
T KOG1409|consen 158 ---------ASALQFDAL--YAFVGDHSGQITMLKLEQ------------------------------------NGCQLI 190 (404)
T ss_pred ---------CCCCceeeE--EEEecccccceEEEEEee------------------------------------cCCceE
Confidence 000000000 111111 22232222221 114567
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
..+.+|... +.+++| .|..+.|++|..|..+-+||+.-.+ ...++.+|...|..+...+.-+.|.+++.||.|.+|
T Consensus 191 ~~~~~h~~~--~~~l~W-d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w 267 (404)
T KOG1409|consen 191 TTFNGHTGE--VTCLKW-DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVW 267 (404)
T ss_pred EEEcCcccc--eEEEEE-cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEE
Confidence 788899986 899999 9999999999999999999996443 345678899999999988888999999999999999
Q ss_pred cCC
Q 012712 413 TPN 415 (458)
Q Consensus 413 ~~~ 415 (458)
+.+
T Consensus 268 ~mn 270 (404)
T KOG1409|consen 268 NMN 270 (404)
T ss_pred ecc
Confidence 765
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=7.6e-11 Score=96.06 Aligned_cols=292 Identities=11% Similarity=0.191 Sum_probs=178.6
Q ss_pred CCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccc--cceeeeeccccccceE
Q 012712 82 DRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILER--GGVETKLLGKHQGRAH 154 (458)
Q Consensus 82 d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~--~~~~~~~~~~~~~~v~ 154 (458)
+.-|.+|++++.. .....+..+.+..+-++|+| +.+.|.++.. +|.|..|.+... +....-.......+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 4569999987432 22222245678899999999 9989988765 477888887653 3221111111223448
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcc--eeecceEEEEECCCCCcEEEEec-CCCeEEE
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVAG-SDEYTRL 230 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~i 230 (458)
.+++++++..++.+.-.-|.|.++-++. |................| +....+....+.|+ ++++++.. .--.|.+
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEE
Confidence 8999999955444445568999999865 443332222111111111 11223778899998 56776654 3346999
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCC-CCCCCCCCccccc
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLG-PNPPPSSPVSTRS 307 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~-~~~~~~~~~~~~~ 307 (458)
|++..+++.... +..+ ......+.|+|+|++++..... +++|.+|..+.... ...+.
T Consensus 172 y~~~dg~L~~~~----------~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ-------- 231 (346)
T COG2706 172 YDLDDGKLTPAD----------PAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ-------- 231 (346)
T ss_pred EEcccCcccccc----------cccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--------
Confidence 999977643221 1111 2345678999999999877766 66899998876311 11100
Q ss_pred cccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecCC-eEEE---Eee
Q 012712 308 EASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKGG-ELIR---VIE 382 (458)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~-~~~~---~~~ 382 (458)
........|.+... ..++.. ++||++|++... ...|.+|.+... ..+. ...
T Consensus 232 --------------------~i~tlP~dF~g~~~---~aaIhi-s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~ 287 (346)
T COG2706 232 --------------------TIDTLPEDFTGTNW---AAAIHI-SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP 287 (346)
T ss_pred --------------------eeccCccccCCCCc---eeEEEE-CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec
Confidence 00112233444433 566776 999999987653 247888877543 2222 223
Q ss_pred cCCceeeEEEecCCCCeEEEeecC-CcEEEecCC--ccccc
Q 012712 383 ADRHVVNCIEPHPHSTVLASSGIE-SDIKILTPN--AADRA 420 (458)
Q Consensus 383 ~~~~~v~~~~~s~~~~~l~s~~~d-~~i~iw~~~--~~~~~ 420 (458)
.+........|+|.|++|+++..+ ..|.+|.++ +|++.
T Consensus 288 teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 288 TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 344557899999999999988775 468888665 44443
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=5.6e-11 Score=96.83 Aligned_cols=281 Identities=14% Similarity=0.142 Sum_probs=172.2
Q ss_pred cCCCceEEEEEecCCCEEEEecC---CCeEEEEECCC--cceeeeec-cCCCcceeEEEEccCCCCeEEEEEcC-CCcEE
Q 012712 59 KHRGCVNTVSFNTDGDILISGSD---DRRVILWDWKT--ERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAA-DGQVR 131 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~---d~~i~iwd~~~--~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~-dg~i~ 131 (458)
.+.+..+-|+|+|++++|.++.. +|.|.-|.++. |+....-. .....+-..+++++ ++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~--~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE--DGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC--CCCEEEEEEccCceEE
Confidence 46678899999999999998755 46787777765 44322111 11223348899999 9999998876 58899
Q ss_pred Eeeccccccee-eeeccccccc----------eEEEEEcCCCCeEEEEec-CCCeEEEEeCCCCCccceeeecccCCCCc
Q 012712 132 HAQILERGGVE-TKLLGKHQGR----------AHKLAIEPGSPHVFYTCG-EDGLVQHFDLRTGAATELFTCRPIDDRRN 199 (458)
Q Consensus 132 vw~~~~~~~~~-~~~~~~~~~~----------v~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 199 (458)
++.+.....+. ......|.+. +....+.|+++ +|++.. .--.|.+|++..+.....-...-.
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~----- 188 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEVK----- 188 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEcccCccccccccccC-----
Confidence 99997643322 1123335544 88899999994 555543 234699999997765433221111
Q ss_pred ceeecceEEEEECCCCCcEEEE-ecCCCeEEEEecCCC--ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712 200 YMTVVNLNAIAIDPRNANLFAV-AGSDEYTRLYDIRKY--KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (458)
Q Consensus 200 ~~~~~~v~~~~~~p~~~~~l~~-~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (458)
.....+-|.|+|+ +++..+ .--+++|.+|..... +.... + .....+.-.. .......|..+|||++|
T Consensus 189 --~G~GPRHi~FHpn-~k~aY~v~EL~stV~v~~y~~~~g~~~~l-Q-----~i~tlP~dF~-g~~~~aaIhis~dGrFL 258 (346)
T COG2706 189 --PGAGPRHIVFHPN-GKYAYLVNELNSTVDVLEYNPAVGKFEEL-Q-----TIDTLPEDFT-GTNWAAAIHISPDGRFL 258 (346)
T ss_pred --CCCCcceEEEcCC-CcEEEEEeccCCEEEEEEEcCCCceEEEe-e-----eeccCccccC-CCCceeEEEECCCCCEE
Confidence 3335688999998 555544 456889999998774 21110 0 0000111111 24567789999999999
Q ss_pred EEecCC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCC
Q 012712 277 VSYNDE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPK 354 (458)
Q Consensus 277 ~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 354 (458)
.++..+ .|.+|.+...... .........+. ..-+...+ +++
T Consensus 259 YasNRg~dsI~~f~V~~~~g~----------------------------------L~~~~~~~teg--~~PR~F~i-~~~ 301 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGK----------------------------------LELVGITPTEG--QFPRDFNI-NPS 301 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCE----------------------------------EEEEEEeccCC--cCCcccee-CCC
Confidence 998854 6888887653110 00111111111 12356666 999
Q ss_pred CcEEEEecCC-CeEEEEEec--CCeEEEEee-cCCceeeEEEec
Q 012712 355 CEYVVSGSDC-GRIFIWKKK--GGELIRVIE-ADRHVVNCIEPH 394 (458)
Q Consensus 355 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-~~~~~v~~~~~s 394 (458)
|++|+++.++ ..|.+|..+ +|++-.... .......|+.|.
T Consensus 302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 302 GRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 9999998876 468888764 455443332 233345566653
No 262
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=5.6e-12 Score=112.10 Aligned_cols=402 Identities=13% Similarity=0.075 Sum_probs=240.8
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCC------------CEEEEe
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDG------------DILISG 79 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~ 79 (458)
++|-|+ ...|.+-|..+-+.+ +.+.-|...|+.+.|.|.. -+||++
T Consensus 28 LiAygs-hslV~VVDs~s~q~i---------------------qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 28 LIAYGS-HSLVSVVDSRSLQLI---------------------QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred eEEEec-CceEEEEehhhhhhh---------------------hccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence 556666 567778888765555 5588899999999998731 357788
Q ss_pred cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC--eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEE
Q 012712 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD--RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (458)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 157 (458)
.-.|.|.+||...+..+..+ ..|..++..++|-|..+. ..|+.-.....+.+|+..+|+.... .........|+.
T Consensus 86 D~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~ 162 (1062)
T KOG1912|consen 86 DISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFR 162 (1062)
T ss_pred cccCcEEEEEehhhhhhhhh-cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeee
Confidence 88899999999988876666 678899999999885443 3566666678999999999988766 333445667789
Q ss_pred EcCCCCeEEEEecCCCeEEEEeCCCCC----ccceeeecccCCC---------Ccceee---------cceEEEEECCCC
Q 012712 158 IEPGSPHVFYTCGEDGLVQHFDLRTGA----ATELFTCRPIDDR---------RNYMTV---------VNLNAIAIDPRN 215 (458)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~---------~~~~~~---------~~v~~~~~~p~~ 215 (458)
+.|-....+..-+..|.+.+-+.-..+ ..+.++....... .+.... .....++|+|.-
T Consensus 163 ~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 163 VDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred eCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 998765556666666777766543211 1222222111000 000000 012245678863
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc--EEEEec-CCcEEEEEccCC
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--LLVSYN-DEFIYLFTQDMG 292 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~-~~~i~i~~~~~~ 292 (458)
.+.++ ......+.++|++-...... ..-..+.+.-+.+-|+++ .|.+.. +|.+.+|-.+..
T Consensus 243 rn~lf-i~~prellv~dle~~~~l~v---------------vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~ 306 (1062)
T KOG1912|consen 243 RNILF-ITFPRELLVFDLEYECCLAV---------------VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE 306 (1062)
T ss_pred hceEE-EEeccceEEEcchhhceeEE---------------EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence 33443 44567799999986543222 222244556677777754 455554 777888865542
Q ss_pred CCCCCCCCC---------------CccccccccccCCCCc-ccc-------------------CCCCCCcc---------
Q 012712 293 LGPNPPPSS---------------PVSTRSEASEMGSDHT-SAA-------------------SPSTANTD--------- 328 (458)
Q Consensus 293 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~--------- 328 (458)
......+.. .....+..+...|... .++ ........
T Consensus 307 ~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~ 386 (1062)
T KOG1912|consen 307 PTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN 386 (1062)
T ss_pred CccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence 221111100 0000000000011100 000 00000000
Q ss_pred ---------cccCceeecCccceeee---------eEEEEecCCCc-------EEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 329 ---------VRIAPQVYKGHRNCVTV---------KGVNFFGPKCE-------YVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 329 ---------~~~~~~~~~~~~~~~~i---------~~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
....+....+|...... .-... .|.|+ ++|.|...|+|.++|+.++...+.+..
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~-~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsv 465 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVEN-DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSV 465 (1062)
T ss_pred CceeehhhccccchhhcCCCCCCceeeecccCcccceeec-CCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcc
Confidence 00000000122221111 11111 33332 678899999999999999999999999
Q ss_pred CCceeeEEEecCCCCeEEE---------eecCCcEEEecCCccccccccc----ccccEEEEEEecCCcEEEeeecCCce
Q 012712 384 DRHVVNCIEPHPHSTVLAS---------SGIESDIKILTPNAADRATLPT----NIEQVCFSIYSADYWWSKSQNFSCSI 450 (458)
Q Consensus 384 ~~~~v~~~~~s~~~~~l~s---------~~~d~~i~iw~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~s~~~d~~i 450 (458)
|...|.++.|--..+++-. ++.-+.+.+=++.+|....+.+ ...+|+.+..|..|.||+..-.|.-+
T Consensus 466 ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~pl 545 (1062)
T KOG1912|consen 466 HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPL 545 (1062)
T ss_pred cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccch
Confidence 9999999999766554432 2223467788888886665542 33459999999999999999999999
Q ss_pred EEEEE
Q 012712 451 LLFEW 455 (458)
Q Consensus 451 ~~w~~ 455 (458)
.+||.
T Consensus 546 Eiwd~ 550 (1062)
T KOG1912|consen 546 EIWDL 550 (1062)
T ss_pred HHHhh
Confidence 99986
No 263
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.9e-13 Score=119.18 Aligned_cols=235 Identities=9% Similarity=0.082 Sum_probs=145.1
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---CcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---GQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
.|.++|.+.+.. ..+ ..+...+....|+| ||+.|+..+.+ ..|.+|++.+++... +....+......|+|
T Consensus 180 ~l~~~d~~g~~~-~~l-~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g~~~~---l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARA-VTL-LQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTGRREQ---ITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCc-eEE-ecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCCCEEE---ccCCCCCcCCeEECC
Confidence 578888775543 333 35677899999999 99999876543 368899998775433 233334455789999
Q ss_pred CCCeEEEEecCCC--eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC--eEEEEecCCC
Q 012712 161 GSPHVFYTCGEDG--LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE--YTRLYDIRKY 236 (458)
Q Consensus 161 ~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~i~d~~~~ 236 (458)
+|..++++...+| .|+++|+.+++...... .........|+|++..++++...+| .|+++|+.++
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-----------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN-----------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeEEccc-----------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 9966666666555 58888998876433221 1113456789998544444444444 4677777665
Q ss_pred ccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEEEEccCCCCCCCCCCCCcccccccccc
Q 012712 237 KWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYLFTQDMGLGPNPPPSSPVSTRSEASEM 312 (458)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (458)
+... +.. .........|+|+|+.|+.... + .|.++|+.++..
T Consensus 322 ~~~~---------------lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~------------------ 367 (430)
T PRK00178 322 RAER---------------VTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV------------------ 367 (430)
T ss_pred CEEE---------------eec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE------------------
Confidence 4211 000 0112345689999999887652 2 478888876421
Q ss_pred CCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCceee
Q 012712 313 GSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRHVVN 389 (458)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~ 389 (458)
+.+..... .....| +|||++++..+.+ ..++++++ .+...+.+..+.+.+.
T Consensus 368 ---------------------~~lt~~~~---~~~p~~-spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~ 421 (430)
T PRK00178 368 ---------------------RILTDTSL---DESPSV-APNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLPTAQGEVR 421 (430)
T ss_pred ---------------------EEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcC
Confidence 11111101 113356 9999999876544 35677777 4444555655566677
Q ss_pred EEEecCC
Q 012712 390 CIEPHPH 396 (458)
Q Consensus 390 ~~~~s~~ 396 (458)
..+|+|-
T Consensus 422 ~p~ws~~ 428 (430)
T PRK00178 422 EPSWSPY 428 (430)
T ss_pred CCccCCC
Confidence 8888873
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.2e-12 Score=116.87 Aligned_cols=218 Identities=16% Similarity=0.070 Sum_probs=129.2
Q ss_pred CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc--EEEEecCCC--eEEEEecCCCccCCCccCCCCC
Q 012712 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN--LFAVAGSDE--YTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
..|.+.|...+....... ......+-.|+||+.. ++++...+| .|++.++..++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~-----------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~--------- 224 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ-----------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK--------- 224 (428)
T ss_pred ceEEEEcCCCCCceEccc-----------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---------
Confidence 367777776655433221 1223456799999543 333444443 5777788766421
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEecC--C--cEEE--EEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--E--FIYL--FTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~i~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
......+.....+|+|||+.|+..++ + .+++ |++..+..
T Consensus 225 -------~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~---------------------------- 269 (428)
T PRK01029 225 -------KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI---------------------------- 269 (428)
T ss_pred -------EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC----------------------------
Confidence 11112334456899999998887653 2 3433 55543210
Q ss_pred CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEE--EecC-CeEEEEeecCCceeeEEEecCCCC
Q 012712 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIW--KKKG-GELIRVIEADRHVVNCIEPHPHST 398 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~~~~~~v~~~~~s~~~~ 398 (458)
............ .....+| +|||+.|+..+ .+|...+| ++.. +.....+..+...+....|||||+
T Consensus 270 -------g~~~~lt~~~~~--~~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 270 -------GKPRRLLNEAFG--TQGNPSF-SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred -------CcceEeecCCCC--CcCCeEE-CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCC
Confidence 011111111111 1345677 99999888665 45654555 4432 233444554555677899999999
Q ss_pred eEEEeecC---CcEEEecCCcccccccccccccEEEEEEecCCcEEEeee-cC--CceEEEEE
Q 012712 399 VLASSGIE---SDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN-FS--CSILLFEW 455 (458)
Q Consensus 399 ~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~d--~~i~~w~~ 455 (458)
.|+..+.+ ..|.+||+.+++...+......+....|+|||++|+... .+ ..|.+++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 98876543 469999999988777665555678899999998887533 33 34655553
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.57 E-value=1.1e-10 Score=99.21 Aligned_cols=292 Identities=12% Similarity=0.105 Sum_probs=167.2
Q ss_pred CCCeEEEeeCC-----CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC--
Q 012712 9 NNKRARTSVDK-----ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-- 81 (458)
Q Consensus 9 ~~~~l~~~~~d-----~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-- 81 (458)
++.+++.-... ++|.+.|..+++.+.. +..-..+- .+ +||||+.|+.+..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~---------------------i~~G~~P~-~~-~spDg~~lyva~~~~ 67 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGM---------------------TDGGFLPN-PV-VASDGSFFAHASTVY 67 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEE---------------------EEccCCCc-ee-ECCCCCEEEEEeccc
Confidence 44454444333 8899999998876643 33222222 24 9999998887765
Q ss_pred --------CCeEEEEECCCcceeeeeccCCC------cceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeee
Q 012712 82 --------DRRVILWDWKTERVKLSFHSGHN------DNVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKL 145 (458)
Q Consensus 82 --------d~~i~iwd~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~ 145 (458)
+..|.+||..+.+.+.++..+-. .....++++| ||++|+.... +..|.+.|+.+++.+....
T Consensus 68 ~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 68 SRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred cccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 67999999999999888743211 2234788999 9999998773 6899999999988766533
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
.. +...-...+++. + ...+.||......+........-...-...........+ .|.+.++.++++..+
T Consensus 146 vp---~~~~vy~t~e~~-~--~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e- 214 (352)
T TIGR02658 146 VP---DCYHIFPTANDT-F--FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT- 214 (352)
T ss_pred CC---CCcEEEEecCCc-c--EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-
Confidence 31 111112222222 1 222344444443332221111100000000000000111 345523566666665
Q ss_pred CeEEEEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeCCCCcEEEEec-----------CCcEEEEEccCCC
Q 012712 226 EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSDQSELLVSYN-----------DEFIYLFTQDMGL 293 (458)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-----------~~~i~i~~~~~~~ 293 (458)
|.|.+.|+...+......+ ........ ..-..+.+.-++++|+++.+.... .+.|.++|..+.
T Consensus 215 G~V~~id~~~~~~~~~~~~----~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~- 289 (352)
T TIGR02658 215 GKIFQIDLSSGDAKFLPAI----EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG- 289 (352)
T ss_pred CeEEEEecCCCcceeccee----eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-
Confidence 9999999765432211100 00000000 000123445599999988776632 136889998773
Q ss_pred CCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEec-CCCeEEEEE
Q 012712 294 GPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSGS-DCGRIFIWK 371 (458)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~~-~dg~i~iwd 371 (458)
+.+..+.-.. .+..+++ +||++ +|++.. .++.|.++|
T Consensus 290 -------------------------------------kvi~~i~vG~---~~~~iav-S~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 290 -------------------------------------KRLRKIELGH---EIDSINV-SQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -------------------------------------eEEEEEeCCC---ceeeEEE-CCCCCeEEEEeCCCCCcEEEEE
Confidence 3333333222 2678888 99999 777666 578899999
Q ss_pred ecCCeEEEEee
Q 012712 372 KKGGELIRVIE 382 (458)
Q Consensus 372 ~~~~~~~~~~~ 382 (458)
..+++.++++.
T Consensus 329 ~~t~k~i~~i~ 339 (352)
T TIGR02658 329 AETGKELSSVN 339 (352)
T ss_pred CcCCeEEeeec
Confidence 99999998883
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.56 E-value=1.3e-11 Score=110.04 Aligned_cols=309 Identities=10% Similarity=0.001 Sum_probs=179.2
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
+..+++++.++.|..+|..+|+.+.+... .......+.. ++..++.++.+|.+..+|..+++.+....+. ..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---~~ 136 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---SE 136 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---ce
Confidence 56788888899999999999998766521 1111112222 5677888888999999999888876653332 12
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
+.+.-.. .+ ..++.++.++.+..+|.++++.+..+........ .. ...+.... + ..++.+..++.+..+|
T Consensus 137 ~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~----~~-~~~sp~~~-~--~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 137 VLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT----LR-GSASPVIA-D--GGVLVGFAGGKLVALD 206 (377)
T ss_pred eecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee----ec-CCCCCEEE-C--CEEEEECCCCEEEEEE
Confidence 2111111 12 3466677899999999999987766543211000 00 00111121 2 3677788889999999
Q ss_pred cCCCccCCCccCCCCCCCcCCCccccccccce-eEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 233 IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGI-TGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
.++++..-......+......... ..+ ....+ .++.+++...++.++.||..+++......
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~-----~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~------------ 268 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERL-----VDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRD------------ 268 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhh-----hccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeec------------
Confidence 988865432211111000000000 000 01111 24445555557789999998764322210
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeE
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNC 390 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~ 390 (458)
.. . .... ..++..++.++.+|.++.+|..+++.+...... ......
T Consensus 269 ------------------------~~---~---~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss 315 (377)
T TIGR03300 269 ------------------------AS---S---YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA 315 (377)
T ss_pred ------------------------cC---C---ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc
Confidence 00 0 1111 224567778888999999999999877655321 112222
Q ss_pred EEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 391 IEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 391 ~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
... .+..|++++.+|.|.++|..+++.. ....+...+...-...+++ |+.++.||.|..|
T Consensus 316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~-l~v~~~dG~l~~~ 376 (377)
T TIGR03300 316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDG-LLVQTRDGDLYAF 376 (377)
T ss_pred CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCE-EEEEeCCceEEEe
Confidence 222 4668888999999999999988776 3333333333332333444 6678899998876
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.1e-12 Score=110.96 Aligned_cols=246 Identities=14% Similarity=0.117 Sum_probs=164.2
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCC
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDR 83 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 83 (458)
+.++....++|+|+.||.+++-.+.+...-... ++++.. ..+..-+++.||.+.|.-+.|+.+.+.|-|...+|
T Consensus 20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~-~glaa~-----snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNK-SGLAAA-----SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEcccCCeEEeccccceeEEEEccccCCcccc-cccccc-----cccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456677789999999999999998865433221 111111 23455678999999999999999999999999999
Q ss_pred eEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 84 RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
.|.+|-+-.+.-..... .....-|.+++|.. ||..++..-.||.|.+=.+..++ +..+.+++ .....+.|++|.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDGNR-IWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeeccce-ecchhcch--heccceeecccH
Confidence 99999998776433322 34566789999999 99999999999998877665433 22222322 123468899998
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccce-----eeecccCCCCcceeecceEEEEEC--------CCCCcEEEEecCCCeEE
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATEL-----FTCRPIDDRRNYMTVVNLNAIAID--------PRNANLFAVAGSDEYTR 229 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~--------p~~~~~l~~~~~dg~i~ 229 (458)
..++.+-..|.+.++|.+..-..+. ......... ....+..+.|. |+ .-.++++..+|.+.
T Consensus 169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~----~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN----FPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQ 242 (1189)
T ss_pred -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC----CCccccceeeccCccccCCCC-CCEEEEEEcCceeh
Confidence 5667777889999999764321110 000000000 11123344442 45 46889999999888
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
+-.-.+.. ....-...-.+..+.|+++|.+|+.++.+
T Consensus 243 iMR~eND~----------------~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 243 IMRSENDP----------------EPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhhcCCC----------------CCeEEecccEeecceecCCCcEEEEccCc
Confidence 86544432 11111223578899999999999988743
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2.3e-11 Score=108.37 Aligned_cols=347 Identities=13% Similarity=0.114 Sum_probs=198.2
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC---C-CEEEEecCCCe
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD---G-DILISGSDDRR 84 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---~-~~l~s~~~d~~ 84 (458)
.--+||++.-.|.|.+||...+..+- .+..|.++|..++|-+. . ..|+.-....+
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~---------------------~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVIN---------------------WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhh---------------------hhcCCCcchhheeeeeccCcchheeEEecCCcE
Confidence 34568888899999999999776653 37789999999999773 3 46666666789
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-------eeeee------------
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-------VETKL------------ 145 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-------~~~~~------------ 145 (458)
+.+|+..+|+..... ........|+.+.|+ |.+.+..-+..|.+.+-+.-...+ .+...
T Consensus 137 lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~ 214 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKY-DYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERET 214 (1062)
T ss_pred EEEEEccCCceeecc-ccCCcceeeeeeCCC-CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhh
Confidence 999999999988776 333455667888887 555555555555555444321100 00000
Q ss_pred -----------------------ccc------------------------------cccceEEEEEcCCC-CeEEEEecC
Q 012712 146 -----------------------LGK------------------------------HQGRAHKLAIEPGS-PHVFYTCGE 171 (458)
Q Consensus 146 -----------------------~~~------------------------------~~~~v~~~~~~~~~-~~~l~s~~~ 171 (458)
+.. ..+.+.-+.+-|+. +..|++.-.
T Consensus 215 at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~ 294 (1062)
T KOG1912|consen 215 ATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHS 294 (1062)
T ss_pred hccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEec
Confidence 000 11222334455543 235677778
Q ss_pred CCeEEEEeCCCCCccc-----eeeecccCC--CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCcc-
Q 012712 172 DGLVQHFDLRTGAATE-----LFTCRPIDD--RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD- 243 (458)
Q Consensus 172 dg~i~iwd~~~~~~~~-----~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 243 (458)
||.+.+|--+...... .+....... .-.......+......|..+..++.--.+|.+.+|.+++++......
T Consensus 295 nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s 374 (1062)
T KOG1912|consen 295 NGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRS 374 (1062)
T ss_pred CCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccc
Confidence 8888888544311110 000000000 00000111233344455545566666678889999998665422111
Q ss_pred ----CCCCCC-----------CcCCCccccccccceeEEEeCC-----------CC-------cEEEEec-CCcEEEEEc
Q 012712 244 ----FGQPAD-----------YFCPPNLIGDEQVGITGLAFSD-----------QS-------ELLVSYN-DEFIYLFTQ 289 (458)
Q Consensus 244 ----~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~-----------~~-------~~l~~~~-~~~i~i~~~ 289 (458)
+..|.. .+......++|.....+....| .| .++|.|. .|+|.++|+
T Consensus 375 ~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdv 454 (1062)
T KOG1912|consen 375 SSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDV 454 (1062)
T ss_pred ccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEe
Confidence 111111 0001111223333333333322 22 1556666 568999998
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE---------E
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV---------S 360 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~---------~ 360 (458)
.++ .....+..|... |.++.| .....++- +
T Consensus 455 st~--------------------------------------~v~~~fsvht~~--VkgleW-~g~sslvSfsys~~n~~s 493 (1062)
T KOG1912|consen 455 STN--------------------------------------AVAASFSVHTSL--VKGLEW-LGNSSLVSFSYSHVNSAS 493 (1062)
T ss_pred cch--------------------------------------hhhhhhcccccc--eeeeee-ccceeEEEeeeccccccc
Confidence 873 344556666664 777777 44333332 2
Q ss_pred ecCCCeEEEEEecCCeEE--EEee-cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc
Q 012712 361 GSDCGRIFIWKKKGGELI--RVIE-ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
|+--+.+.+-|+.+|... +.++ ....+|..+..|.-++||+..-.|.-+.+||+.+..+
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred cceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchH
Confidence 233356778888888543 2233 2456899999999999999999999999999965433
No 269
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.50 E-value=4.4e-11 Score=106.61 Aligned_cols=307 Identities=15% Similarity=0.119 Sum_probs=176.8
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+.++++++.+|.|..+|..+|+.+.+ .+-......... .++..++.++.++.+..+|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~---------------------~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWR---------------------VDLDERLSGGVG--ADGGLVFVGTEKGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeee---------------------ecCCCCcccceE--EcCCEEEEEcCCCEEEEEE
Confidence 55788888899999999998987744 111111111122 2466788888899999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCeEE
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPHVF 166 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l 166 (458)
.++|+.+.+... ...+.+ +|...+..++.++.+|.+..||..+++.+........... ....... ++ .+
T Consensus 122 ~~tG~~~W~~~~--~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v 193 (377)
T TIGR03300 122 AEDGKELWRAKL--SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GV 193 (377)
T ss_pred CCCCcEeeeecc--Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EE
Confidence 999998776522 223322 1111344677777889999999998887654322211000 0011111 22 46
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFG 245 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (458)
+.+..++.+..+|+++++.....................+ ....+. +..+++++.+|.++.+|..+++..-....
T Consensus 194 ~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~---~~~vy~~~~~g~l~a~d~~tG~~~W~~~~- 269 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD---GGQVYAVSYQGRVAALDLRSGRVLWKRDA- 269 (377)
T ss_pred EEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE---CCEEEEEEcCCEEEEEECCCCcEEEeecc-
Confidence 7788889999999999986554322110000000000000 111121 24677788899999999988764322110
Q ss_pred CCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCC
Q 012712 246 QPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTA 325 (458)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (458)
........ .++.+++...++.++.+|..+++......
T Consensus 270 ----------------~~~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------------------------- 306 (377)
T TIGR03300 270 ----------------SSYQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKND-------------------------- 306 (377)
T ss_pred ----------------CCccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccc--------------------------
Confidence 01111111 13444444446789999988764332210
Q ss_pred CcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCcee-eEEEecCCCCeEEEee
Q 012712 326 NTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVV-NCIEPHPHSTVLASSG 404 (458)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~ 404 (458)
.+.... ..+... .+..|++++.+|.++++|..+++.+..++.+...+ ...++. ++ .|+.++
T Consensus 307 ---------~~~~~~----~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~ 368 (377)
T TIGR03300 307 ---------ELKYRQ----LTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQT 368 (377)
T ss_pred ---------cccCCc----cccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEe
Confidence 010000 111111 35688889999999999999999998888666433 233332 33 477888
Q ss_pred cCCcEEEe
Q 012712 405 IESDIKIL 412 (458)
Q Consensus 405 ~d~~i~iw 412 (458)
.||.|..+
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 89998775
No 270
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.49 E-value=2.4e-12 Score=102.09 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=171.3
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcc-eeeee---ccCCC------------cceeEEEEccCCCCeEEEE
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTER-VKLSF---HSGHN------------DNVFQAKIMPFTDDRSIVT 123 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---~~~~~------------~~i~~~~~~~~~~~~~l~s 123 (458)
....|+++.|...|.||++|...|.|.+|.-.... +...+ .++|. ..|..+.|.....-..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999765432 11111 13343 4688889886333456777
Q ss_pred EcCCCcEEEeecccccce-----------------------------------------eeeeccccccceEEEEEcCCC
Q 012712 124 CAADGQVRHAQILERGGV-----------------------------------------ETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 124 ~~~dg~i~vw~~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~ 162 (458)
.+.|.+|++|.+...... .......|...++++.|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 778999999988543110 000113577788999999887
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
..+++ +.|-.|.+|+++-......+.-.+....+. -..-|++..|+|...+.+.-.+..|.|++-|+|...+-...
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmee--LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEE--LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred -heeee-ccceeeeeccccccCCceEEEeccCccHHH--HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 44444 457789999987544322221111111111 22347888999987788888899999999999854321100
Q ss_pred -cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCC-CCCCCccccccccccCCCCcccc
Q 012712 243 -DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNP-PPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
.+-.............+-...|..+.|+++|+++++-.--++++||.+..+.+.. ++-+....
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~--------------- 325 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLM--------------- 325 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHH---------------
Confidence 0000000000112223334678899999999999998888999999987543211 11000000
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
..+........--.-..+.| |.|.+.+.+|+..+..-+|-.
T Consensus 326 ----------~~l~d~YEnDaifdkFeisf-Sgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 326 ----------DELNDVYENDAIFDKFEISF-SGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ----------HHHHhhhhccceeeeEEEEe-cCCcccccccccccceeeecc
Confidence 00000000111011245666 888899999998888777764
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.1e-11 Score=109.43 Aligned_cols=281 Identities=10% Similarity=0.106 Sum_probs=184.6
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcce--------------eeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV--------------KLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
......|++|+....++|+|+.||.+++-.+.+... +.+.+.+|.+.|.-+.|.. ..+.|-++.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--ccccccccC
Confidence 345678999999999999999999999998765321 1223479999999999998 888899999
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc-ceeeecccCCCCcceeec
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT-ELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 204 (458)
.+|.|.+|-+-.+.......-....+.|.+++|+.+| ..+...-.||.|.+=.++..+.- +.+. ..
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLk------------g~ 157 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELK------------GQ 157 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcc------------hh
Confidence 9999999999887765544344556788999999999 56777888888877665543221 1111 11
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC--------CCCcEE
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS--------DQSELL 276 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~~~~l 276 (458)
....+.|++| ...++.+-.+|.+.+||....-.. .+.....+. ...........|..+.|. |+...|
T Consensus 158 ~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~~-Kl~~~c~Vn---~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 158 LLAHVLWSED-LEQALFKKANGETHLYDNQGNFER-KLEKDCEVN---GTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred eccceeeccc-HHHHHhhhcCCcEEEecccccHHH-hhhhceEEe---eeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 2457889998 577777888999999997643111 000000000 000011111224444443 455566
Q ss_pred EEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 277 VSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 277 ~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
+.+. .|.+.+..-.+. +.+..+... ..+....| +++|
T Consensus 233 avcy~nGr~QiMR~eND--------------------------------------~~Pvv~dtg---m~~vgakW-nh~G 270 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSEND--------------------------------------PEPVVVDTG---MKIVGAKW-NHNG 270 (1189)
T ss_pred EEEEcCceehhhhhcCC--------------------------------------CCCeEEecc---cEeeccee-cCCC
Confidence 6665 445655543331 111111111 23778888 9999
Q ss_pred cEEEEecCC---------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712 356 EYVVSGSDC---------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 356 ~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
..||.++.+ +.|.+|.. -|+.+.+++.....|++++|-..|-.+|.+
T Consensus 271 ~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 271 AVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 999988754 35666664 678888998888889999997766555443
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=6.6e-12 Score=108.23 Aligned_cols=169 Identities=19% Similarity=0.157 Sum_probs=134.7
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccc---------------------------------------ccccccc
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFAL---------------------------------------RRRASED 46 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~---------------------------------------~~~~~~~ 46 (458)
+||...++|....||.+||||..++++... |.| ++-+...
T Consensus 1 ~~~~~~~~A~~~~~g~l~iw~t~~~~~~~e-~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 1 SPPALDYFALSTGDGRLRIWDTAKNQLQQE-FAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred CCchhheEeecCCCCeEEEEEccCceeeee-eccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 467778899999999999999998876543 222 2222222
Q ss_pred ceEEe------eeeeEee--cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC
Q 012712 47 LVLRL------GIYAKLD--KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD 118 (458)
Q Consensus 47 ~~~~~------~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 118 (458)
+..-+ ++...+. .|.+.|.++.++.+-..|.+++.|+.+..|+......+..+ ......+.+++.+| |+
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~--D~ 156 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISP--DG 156 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcC--CC
Confidence 22221 4555554 79999999999998899999999999999999988887776 67788899999999 99
Q ss_pred eEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC-----CCeEEEEecCCCeEEEEeCCC
Q 012712 119 RSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-----SPHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~ 182 (458)
..+++++ ++|++||+++.+.+.. +.+|.++|++++|.-+ |.++|.+...+.-+.+|-++.
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~--ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVIT--FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEE--ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999998 5899999999888876 9999999999999876 555666666677788887665
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.47 E-value=7.2e-10 Score=107.39 Aligned_cols=369 Identities=13% Similarity=0.038 Sum_probs=216.9
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccc--------ccc---ccc-----------------cceEEeeee
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFAL--------RRR---ASE-----------------DLVLRLGIY 54 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~--------~~~---~~~-----------------~~~~~~~~~ 54 (458)
.+.+|||..+|+....++.+.+-... -+.+....-. .++ |++ +....-...
T Consensus 125 a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~ 203 (928)
T PF04762_consen 125 AASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDE 203 (928)
T ss_pred EEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcccc
Confidence 46799999999999989988776543 2332220000 000 000 000000001
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecC------CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC--
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSD------DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-- 126 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-- 126 (458)
..+. +...-..++|-.||.++|+.+. -+.++||+-+ |...... ..-.+--.+++|.| .|++||+...
T Consensus 204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrP--sG~lIA~~q~~~ 278 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRP--SGNLIASSQRLP 278 (928)
T ss_pred Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCC--CCCEEEEEEEcC
Confidence 2233 5556678999999999998764 2689999955 6543332 33344456789999 9999998765
Q ss_pred -CCcEEEeecccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcce
Q 012712 127 -DGQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYM 201 (458)
Q Consensus 127 -dg~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~ 201 (458)
...|.+|.-+.- .-....+. .....|..+.|++++ .+|+....|. |.+|-..+-.-- +.+...
T Consensus 279 ~~~~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~--------- 346 (928)
T PF04762_consen 279 DRHDVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFS--------- 346 (928)
T ss_pred CCcEEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEcc---------
Confidence 345666664322 11112222 355689999999999 6777766554 999987765422 222211
Q ss_pred eecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec
Q 012712 202 TVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN 280 (458)
Q Consensus 202 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 280 (458)
....+..+.|+|..+..|...+.+|.+..++..-... .+-...|+.. .+++..
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~--------------------------~s~~~~~~D~g~vaVID 400 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS--------------------------RSPGSSPNDNGTVAVID 400 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE--------------------------ecCCCCccCceEEEEEe
Confidence 1223455999998888888888888887776642110 0001122222 334444
Q ss_pred CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE
Q 012712 281 DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS 360 (458)
Q Consensus 281 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~ 360 (458)
+.++.+-.++....+.++ ....+.-. ..|..++| ++++..+++
T Consensus 401 G~~lllTpf~~a~VPPPM---------------------------------s~~~l~~~---~~v~~vaf-~~~~~~~av 443 (928)
T PF04762_consen 401 GNKLLLTPFRRAVVPPPM---------------------------------SSYELELP---SPVNDVAF-SPSNSRFAV 443 (928)
T ss_pred CCeEEEecccccCCCchH---------------------------------hceEEcCC---CCcEEEEE-eCCCCeEEE
Confidence 446777777654332221 11222222 14889998 898888888
Q ss_pred ecCCCeEEEEEecCCeEE--------EEee----------cCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccc
Q 012712 361 GSDCGRIFIWKKKGGELI--------RVIE----------ADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADR 419 (458)
Q Consensus 361 ~~~dg~i~iwd~~~~~~~--------~~~~----------~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~ 419 (458)
-..||.|.+|........ ..+. .....+..++|..+...++....+ ..+.+++....+.
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 523 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN 523 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence 899999999986432211 1111 123457888998888776666554 6788888743321
Q ss_pred c----ccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712 420 A----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILL 452 (458)
Q Consensus 420 ~----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~ 452 (458)
. ......+.+..+...++...++....||.+..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~ 560 (928)
T PF04762_consen 524 SASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQ 560 (928)
T ss_pred ceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEE
Confidence 1 22222334555556666654566677887764
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.2e-11 Score=106.63 Aligned_cols=191 Identities=10% Similarity=0.120 Sum_probs=142.5
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE------CCC-------------CCcEEEEecC
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI------DPR-------------NANLFAVAGS 224 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~p~-------------~~~~l~~~~~ 224 (458)
.+++....||.+++||...++..+.+...... .+...+..| +|. +...++-|..
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~ 78 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTP 78 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecC
Confidence 67899999999999999988877666532211 111222222 221 2347888999
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCCc
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSPV 303 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~~ 303 (458)
.|.|.+|++..++.... .....|.+.|.++.++.+-..|.+++.+ .+..|+....
T Consensus 79 ~g~v~~ys~~~g~it~~-------------~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----------- 134 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAK-------------LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK----------- 134 (541)
T ss_pred CccEEEEEecCCeEEEE-------------EecCCCCCcceeeecccccCceEecCCceeEEEEecccc-----------
Confidence 99999999998875322 2235688999999999998889888855 7999998773
Q ss_pred cccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec
Q 012712 304 STRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA 383 (458)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 383 (458)
...+.+..... .+.+++. +|||+.+++++ ++|.+||+++.+.+.++.+
T Consensus 135 ---------------------------~~~~~~~~~~~--~~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftg 182 (541)
T KOG4547|consen 135 ---------------------------VIIRIWKEQKP--LVSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTG 182 (541)
T ss_pred ---------------------------eeeeeeccCCC--ccceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecC
Confidence 34445554444 3778887 99999999886 7899999999999999999
Q ss_pred CCceeeEEEecCC-----CCeEE-EeecCCcEEEecCCcc
Q 012712 384 DRHVVNCIEPHPH-----STVLA-SSGIESDIKILTPNAA 417 (458)
Q Consensus 384 ~~~~v~~~~~s~~-----~~~l~-s~~~d~~i~iw~~~~~ 417 (458)
|.++|++++|-.+ |.++. +...+..+.+|-+...
T Consensus 183 h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 183 HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred CCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999999999876 56555 4455677888877653
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.45 E-value=1.2e-11 Score=97.21 Aligned_cols=206 Identities=13% Similarity=0.025 Sum_probs=141.9
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceee-eeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKL-SFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
-.++.|++.+..++++..+|.+.+-+........ +..+.|.-+++-..|+.. +.+++.+|+.|+.+..||++.++...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCccee
Confidence 4577889999999999999998855544433322 234789999999999874 56789999999999999998554433
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
-...+-|...|.+|.-+|..+..+++|+.|-.|++||.+. ++++..-. ..+.|..+..+|.....++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-----------v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-----------VGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-----------cccceEEEEecchhhhHHHH
Confidence 3335568999999999998888999999999999999984 44443322 33579999999974334444
Q ss_pred ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEE-EEEccC
Q 012712 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIY-LFTQDM 291 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~-i~~~~~ 291 (458)
++.-.-.++-+......... ........|.+-...-.|.....+|++++ +..++ +|-.-+
T Consensus 272 ~CMh~G~ki~~~~~~~~e~~----------~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 272 ACMHNGAKILDSSDKVLEFQ----------IVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred HHHhcCceEEEecccccchh----------eeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 44444477777765542211 11223334555555556655556788876 44544 775443
No 276
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.45 E-value=6.1e-10 Score=93.89 Aligned_cols=225 Identities=15% Similarity=0.101 Sum_probs=149.4
Q ss_pred CCCCCeEEEeeCCCcEEEEEcccccccccccc-ccccccccceEEeeeeeEeecCCCceEEEE-Eec-CCCEEEEecCCC
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFA-LRRRASEDLVLRLGIYAKLDKHRGCVNTVS-FNT-DGDILISGSDDR 83 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~-~~~~l~s~~~d~ 83 (458)
+.||++++-.- .|.|.++|.++..+.+-... ++.. . ......-.+..-+. |++ +|.+++..|. |
T Consensus 275 nsDGkrIvFq~-~GdIylydP~td~lekldI~lpl~r-k----------~k~~k~~~pskyledfa~~~Gd~ia~VSR-G 341 (668)
T COG4946 275 NSDGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDR-K----------KKQPKFVNPSKYLEDFAVVNGDYIALVSR-G 341 (668)
T ss_pred CCCCcEEEEec-CCcEEEeCCCcCcceeeecCCcccc-c----------cccccccCHHHhhhhhccCCCcEEEEEec-C
Confidence 56788866544 78899999997554321000 0000 0 00000111111121 333 6888888876 6
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC-cEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG-QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
...|.+...+-.++ -+|...|.-..+.. +++-++.|..|| .+-++|..+++... +...-+.|.++..+|+|
T Consensus 342 kaFi~~~~~~~~iq---v~~~~~VrY~r~~~--~~e~~vigt~dgD~l~iyd~~~~e~kr---~e~~lg~I~av~vs~dG 413 (668)
T COG4946 342 KAFIMRPWDGYSIQ---VGKKGGVRYRRIQV--DPEGDVIGTNDGDKLGIYDKDGGEVKR---IEKDLGNIEAVKVSPDG 413 (668)
T ss_pred cEEEECCCCCeeEE---cCCCCceEEEEEcc--CCcceEEeccCCceEEEEecCCceEEE---eeCCccceEEEEEcCCC
Confidence 78888766554432 37888899988888 888899999999 89999998776433 45566889999999999
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC----eEEEEecCCCcc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE----YTRLYDIRKYKW 238 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~i~d~~~~~~ 238 (458)
+.++.+-....+.+.|+.++.....-+. ...-|+.+.|+|+ ++++|-+--+| .|+++|+..++.
T Consensus 414 -K~~vvaNdr~el~vididngnv~~idkS----------~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 414 -KKVVVANDRFELWVIDIDNGNVRLIDKS----------EYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred -cEEEEEcCceEEEEEEecCCCeeEeccc----------ccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCeE
Confidence 5677777788899999999975433221 3345899999997 78998876655 589999998764
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
... ......=.+-+|.|++++|..-+
T Consensus 482 y~v----------------TT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YDV----------------TTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEe----------------cCCcccccCcccCCCCcEEEEEe
Confidence 221 01122234567899999776544
No 277
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=9.5e-13 Score=127.03 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=147.4
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (458)
-.|...+-+||+.||.|++|....++.+-. . +-.|. ..|+.+.|+.+|+.+..+..||.+
T Consensus 2216 sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~------------------~-rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l 2275 (2439)
T KOG1064|consen 2216 SHPSDPYYLTGSQDGSVRMFEWGHGQQVVC------------------F-RTAGN-SRVTRSRFNHQGNKFGIVDGDGDL 2275 (2439)
T ss_pred CCCCCceEEecCCCceEEEEeccCCCeEEE------------------e-eccCc-chhhhhhhcccCCceeeeccCCce
Confidence 356667889999999999999997765522 1 11233 889999999999999999999999
Q ss_pred EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---CCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
.+|... .++.... +.|.....+..|. +..+++++. ++.+.+||..-....... ...|.+.++++++-|..
T Consensus 2276 ~l~q~~-pk~~~s~-qchnk~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~ 2348 (2439)
T KOG1064|consen 2276 SLWQAS-PKPYTSW-QCHNKALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKH 2348 (2439)
T ss_pred eecccC-Ccceecc-ccCCccccceeee----ehhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcc
Confidence 999977 4444444 6788889999996 367777654 688999997544332222 37899999999999998
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCC
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
++|++|+.+|.|++||++..+....++ . ++ . ..+|++|+..|.++||++.....+..
T Consensus 2349 -qllisggr~G~v~l~D~rqrql~h~~~---------------~----~~-~-~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2349 -QLLISGGRKGEVCLFDIRQRQLRHTFQ---------------A----LD-T-REYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred -eEEEecCCcCcEEEeehHHHHHHHHhh---------------h----hh-h-hheeeccCcccceEEEEccccchhhc
Confidence 899999999999999999988776654 1 33 2 57999999999999999998766554
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=1.3e-09 Score=105.60 Aligned_cols=327 Identities=14% Similarity=0.158 Sum_probs=194.8
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEE----ECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeec
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILW----DWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iw----d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~ 135 (458)
..+.|.++.+-++...|+.+..+|.|.+. +..+... .....-...|.+++||| |++.|+....++++.+-.-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~WSP--D~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASWSP--DEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEECC--CcCEEEEEeCCCEEEEEec
Confidence 35789999999999989999999999999 5443332 22133467899999999 9999999988888766421
Q ss_pred ----cc---------c--cce-------ee------------------------eeccccccceEEEEEcCCCCeEEEEe
Q 012712 136 ----LE---------R--GGV-------ET------------------------KLLGKHQGRAHKLAIEPGSPHVFYTC 169 (458)
Q Consensus 136 ----~~---------~--~~~-------~~------------------------~~~~~~~~~v~~~~~~~~~~~~l~s~ 169 (458)
-. + +.+ .+ ..+. +...-..++|-.|| .++++.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG-~yFAVs 227 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG-EYFAVS 227 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC-cEEEEE
Confidence 00 0 000 00 0011 23345678999999 566665
Q ss_pred cC---C---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---CCeEEEEecCCCccCC
Q 012712 170 GE---D---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDG 240 (458)
Q Consensus 170 ~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 240 (458)
+. . ..+++|+-+ |....... +. .+--.+++|-|. |++||+.-. ...|.+|.-+..+. +
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~stSE--~v--------~gLe~~l~WrPs-G~lIA~~q~~~~~~~VvFfErNGLrh-g 294 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQSTSE--PV--------DGLEGALSWRPS-GNLIASSQRLPDRHDVVFFERNGLRH-G 294 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEeccc--cC--------CCccCCccCCCC-CCEEEEEEEcCCCcEEEEEecCCcEe-e
Confidence 53 2 579999855 54332222 11 111257899998 788887754 34566666544331 1
Q ss_pred CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcccc
Q 012712 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAA 320 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (458)
.+.+ ........|..+.|++|+..||....+.|.+|-..+-.-.
T Consensus 295 eF~l-----------~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWY------------------------- 338 (928)
T PF04762_consen 295 EFTL-----------RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWY------------------------- 338 (928)
T ss_pred eEec-----------CCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEE-------------------------
Confidence 1111 1123456789999999999999988888999988764211
Q ss_pred CCCCCCcccccCceeecCccceeeeeEEEEecCCC-cEEEEecCCCeEEEEEe----cC----------------CeEE-
Q 012712 321 SPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EYVVSGSDCGRIFIWKK----KG----------------GELI- 378 (458)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~----~~----------------~~~~- 378 (458)
..+.+.-.... .+..+.| +|.. ..|...+.+|.+..++. .. |..+
T Consensus 339 -----------LKqei~~~~~~-~~~~~~W-dpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 339 -----------LKQEIRFSSSE-SVNFVKW-DPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL 405 (928)
T ss_pred -----------EEEEEEccCCC-CCCceEE-CCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence 01111100000 1222444 4432 23334443344433322 10 1110
Q ss_pred ---------------EEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc---------cc----------cc
Q 012712 379 ---------------RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA---------TL----------PT 424 (458)
Q Consensus 379 ---------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~---------~~----------~~ 424 (458)
..+. -..+|.+++|++++..+|+-..||.|.+|........ .+ ..
T Consensus 406 lTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSEL 484 (928)
T ss_pred EecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccccccccccccc
Confidence 1111 2457999999999988999999999999985433211 11 11
Q ss_pred ccccEEEEEEecCCcEEEeeecC---CceEEEEE
Q 012712 425 NIEQVCFSIYSADYWWSKSQNFS---CSILLFEW 455 (458)
Q Consensus 425 ~~~~v~~~~~s~d~~~l~s~~~d---~~i~~w~~ 455 (458)
....+..++|..+...++....+ ..+.+++.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 518 (928)
T PF04762_consen 485 PLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDI 518 (928)
T ss_pred ccccEEEEEEeCCCEEEEEEecCcccceEEEEEe
Confidence 23347888998888776665554 55777665
No 279
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.1e-12 Score=112.23 Aligned_cols=176 Identities=20% Similarity=0.263 Sum_probs=129.2
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCc-------ceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTE-------RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
.+..+.||+..|+.++--.+.+-+++++.|++|++|.++.. .+..++ ..|+.+|.++.|.. +.+.++++
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~--~lr~i~Sc- 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLA--DLRSIASC- 802 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeee--ccceeeec-
Confidence 34567899999999987777788999999999999998632 233444 78999999999998 88888766
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCC-CCeEEEEe-cCCCeEEEEeCCCCCccceeeecccCCCCcceee
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG-SPHVFYTC-GEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
||.|.+||.--++.+.........+.+..+..-|+ ...+++++ +...+|+++|.+..+....++...... ..
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~-----Pn 876 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG-----PN 876 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC-----Cc
Confidence 68899999877665542212222233444444444 22444444 788999999999988776665432211 33
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
.-+.+++..|. |+.++++-.+|.|.+.|.++++..
T Consensus 877 a~~R~iaVa~~-GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 877 ALTRAIAVADK-GNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred hheeEEEeccC-cchhhHHhcCCcEEEEecCCCcee
Confidence 45789999997 799999999999999999998743
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.40 E-value=5.7e-12 Score=111.45 Aligned_cols=291 Identities=14% Similarity=0.151 Sum_probs=185.6
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
.+++.++..+|.|+-+|.++.-| +.+-|++..-.....+ .--.-.|-.+.|+|+....+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788899999999999998877 5666776543323331 112335677889885444454444444556689886543
Q ss_pred c-eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 140 G-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 140 ~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
. .....+.+|...|+.+.|+|+.+.++++++.|-.+..||++......-.... -......+.|+-.+++.
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---------w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---------WRSAASQVKWNYKDPNV 173 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---------ccccCceeeecccCcch
Confidence 2 2334577899999999999999999999999999999999987643211110 12245678898876666
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPN 296 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~ 296 (458)
+++ +....|++||.+.+. .+.....+|...|..+.|+.- ++.+-+..+++++.||........
T Consensus 174 las-shg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 174 LAS-SHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred hhh-ccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccc
Confidence 654 456679999999875 233344456777888888753 445555557799999987643222
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc--EEE---------EecCCC
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE--YVV---------SGSDCG 365 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~l~---------~~~~dg 365 (458)
... . .... .+..-.+ -|=|+ ++. .-.-+.
T Consensus 239 ~~~------------------------------------v-tt~~--piw~~r~-~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 239 KRT------------------------------------V-TTNF--PIWRGRY-LPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred cee------------------------------------c-cccC--cceeccc-cccCceeEeccccCCeeeeeccccc
Confidence 110 0 0000 1222222 23221 111 111122
Q ss_pred eEEEEEecC-CeEEEEeecCCceeeEEEecCCC----------CeEEEeecCCcEEEecCCc
Q 012712 366 RIFIWKKKG-GELIRVIEADRHVVNCIEPHPHS----------TVLASSGIESDIKILTPNA 416 (458)
Q Consensus 366 ~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~d~~i~iw~~~~ 416 (458)
.-..|+..+ .+++.++.||...|....|-..+ -.|+|-+.|.++++|-+.+
T Consensus 279 ~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 279 SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 223344333 36788999999988877774322 1699999999999998875
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.38 E-value=3.1e-11 Score=93.38 Aligned_cols=201 Identities=13% Similarity=0.093 Sum_probs=125.5
Q ss_pred eEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECC
Q 012712 12 RARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWK 91 (458)
Q Consensus 12 ~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~ 91 (458)
.|+++..++.+......++.++.. .+...+....+.+..|+++-.+-+.+--++.++++..||.+.+++.+
T Consensus 49 ~lf~~e~~~~~ss~g~~r~~~~~~---------~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 49 ILFTGETSSQIISLGKGRGRCISL---------WERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred eeecccchhheeeeccceEEEech---------hhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 456666666666655555444422 11112234455566666655555555567789999999999999977
Q ss_pred Cccee-eeeccCCCcceeEEEEccCCCCeEEEEEcC-----CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeE
Q 012712 92 TERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 92 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 165 (458)
.-..+ .++...|.+. .+.++.. .++.+.++.- -+..+.|++...+..... ......|.+++-+|...++
T Consensus 120 ~~~~~~~~i~~~~~~~-as~~~~~--~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~ 194 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSGS-ASRKICR--HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHL 194 (319)
T ss_pred HHHhhhhhcccccccc-cccceee--cccEEecCCcceEeeccceeeeccccccccccc--ccccccchhhhCCcccccE
Confidence 52211 1111112211 1222333 4444444332 234566666544433221 1122349999999988789
Q ss_pred EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
+++|+.||.+.+||.+.......+... +..++..+-|+|.++..|+++++||.+.-||..+
T Consensus 195 v~cgt~dg~~~l~d~rn~~~p~S~l~a---------hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 195 VCCGTDDGIVGLWDARNVAMPVSLLKA---------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEecCCCeEEEEEcccccchHHHHHH---------hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999988544332211 5668999999999999999999999999999864
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=8.9e-10 Score=97.98 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=124.7
Q ss_pred ceEEEEEcCCCCeEEEEecC---CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC--C
Q 012712 152 RAHKLAIEPGSPHVFYTCGE---DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD--E 226 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g 226 (458)
......|+|++..+++..+. +..|.++|+.+++...... .........|+||+..++++.+.+ .
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-----------~~g~~~~~~~SPDG~~la~~~~~~g~~ 257 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-----------SQGMLVVSDVSKDGSKLLLTMAPKGQP 257 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-----------CCCcEEeeEECCCCCEEEEEEccCCCc
Confidence 67789999999643443332 3569999998887655433 122345678999855555555444 4
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCCCCCCCC
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~~~~~~~ 302 (458)
.|+++|+.+++... + ...........|+|||+.|+..++. .|+++++.++....
T Consensus 258 ~Iy~~dl~~g~~~~---------------L-T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------ 315 (419)
T PRK04043 258 DIYLYDTNTKTLTQ---------------I-TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------ 315 (419)
T ss_pred EEEEEECCCCcEEE---------------c-ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------
Confidence 67788877654211 1 1111223345799999988877643 48888877542100
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---------CeEEEEEec
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---------GRIFIWKKK 373 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---------g~i~iwd~~ 373 (458)
..+.+.. ...| +|||++|+..... ..|++.|+.
T Consensus 316 -------------------------------lt~~g~~------~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 316 -------------------------------VVFHGKN------NSSV-STYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred -------------------------------CccCCCc------CceE-CCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 0011111 1256 9999988865543 368888987
Q ss_pred CCeEEEEeecCCceeeEEEecCCCCeEEEeecC---CcEEEecCCcccccccccccccEEEE
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---SDIKILTPNAADRATLPTNIEQVCFS 432 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---~~i~iw~~~~~~~~~~~~~~~~v~~~ 432 (458)
+++. +.+... .......|+|||+.|+....+ ..|.+.++.......+....+.+...
T Consensus 358 ~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 358 SDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred CCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence 7764 344332 233468999999988766543 24667777766555554444444433
No 283
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.35 E-value=3.6e-10 Score=88.05 Aligned_cols=244 Identities=12% Similarity=-0.015 Sum_probs=161.5
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecC-CCEEEEecCCCeEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTD-GDILISGSDDRRVILW 88 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~iw 88 (458)
-..||.|+.-|...+|...+.+...+ ....|...|+-+.=..| .-.+..++.|.++++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~--------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY--------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred ccEEEeccccceeeeecccCccccee--------------------eecccccchhhhhhhcccccceeeccCCcceeEE
Confidence 34688898999999999987665422 23334443332221111 2235567889999999
Q ss_pred ECCCcceeeeeccCCCc--ceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccccceEEEEEcCCCCeE
Q 012712 89 DWKTERVKLSFHSGHND--NVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQGRAHKLAIEPGSPHV 165 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~ 165 (458)
+++.+...... |.. .+.++.+++ |++++++.+....|-.|.+......... .....++.-.+..|+... ..
T Consensus 144 ~~~~~s~~~~~---h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~ 217 (344)
T KOG4532|consen 144 VVSGDSNKFAV---HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ 217 (344)
T ss_pred EEecCccccee---eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence 88765543333 333 388999999 9999999999999999998765543322 344445556788899887 68
Q ss_pred EEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC-cEEEEecCCCeEEEEecCCCccCCCccC
Q 012712 166 FYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA-NLFAVAGSDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 166 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (458)
++++..||++.+||++............. .| +.+.+..+.|++.+. .+|+..-.-+.+.+.|+++.+..+....
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstr----p~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTR----PH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccC----CC-CCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 99999999999999987654433222111 11 667899999997532 3455555567899999998864332211
Q ss_pred CCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 245 GQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
.. .....+....|..-.|+.++.-+.+.++..+.-|++..
T Consensus 293 ~~-------d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 293 PD-------DVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred Cc-------cccccccccccccccccCCCcccccccchhhheeeccc
Confidence 11 11122223347778888888877777777777787765
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.34 E-value=1.3e-09 Score=107.73 Aligned_cols=274 Identities=11% Similarity=0.071 Sum_probs=155.0
Q ss_pred EEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-Cc---ceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712 154 HKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-RN---YMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (458)
Q Consensus 154 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (458)
..+++++.+..++++-+.++.|+++|... .....+........ .+ ...-.....++++++++.++++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788876547788888889999999764 33222221000000 00 001224678999987433344444567899
Q ss_pred EEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCcccc
Q 012712 230 LYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTR 306 (458)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~ 306 (458)
.+|..++........+........... ....-.....++++| ++.++++.. ++.|++||..++....
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~---------- 719 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV---------- 719 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE----------
Confidence 999876542110000000000000000 000012346899999 455555555 4579999986642110
Q ss_pred ccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCCeEEEEeec--
Q 012712 307 SEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGGELIRVIEA-- 383 (458)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~-- 383 (458)
+..++..... . .... ...... ....+++ +|++++|+ +-+.+++|++||+.++.......+
T Consensus 720 -----~~G~G~~~~~--~-----g~~~-~~~~~~---~P~GIav-spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 720 -----FSGDGYERNL--N-----GSSG-TSTSFA---QPSGISL-SPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred -----EecCCccccC--C-----CCcc-cccccc---CccEEEE-eCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 0000000000 0 0000 000001 2467887 99998554 556679999999987653211100
Q ss_pred -----------C--------CceeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc--------------ccccEE
Q 012712 384 -----------D--------RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT--------------NIEQVC 430 (458)
Q Consensus 384 -----------~--------~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~--------------~~~~v~ 430 (458)
+ -.....++++++|+++++-..+++|++||..++....+.+ ......
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 0 1124689999999988888899999999998776543322 122477
Q ss_pred EEEEecCCcEEEeeecCCceEEEEE
Q 012712 431 FSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 431 ~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.++++++|+++++-+.++.|++|+.
T Consensus 863 GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 863 GLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred EEEEeCCCCEEEEECCCCEEEEEEC
Confidence 8999999998888889999999985
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.33 E-value=6e-11 Score=97.63 Aligned_cols=167 Identities=12% Similarity=0.114 Sum_probs=120.4
Q ss_pred CCCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC
Q 012712 2 DDASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD 81 (458)
Q Consensus 2 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 81 (458)
..+.+++.+++||.+..+....+.++...... .++.-...+..-...|+.+..+......-.++.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---------------~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG---------------AKLLDVSCVPKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc---------------ceeeeEeecccCcceeeeeeccceEEEEeecCC
Confidence 35678999999999998888778887743221 111111222223344444444433333334556
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
...+.+|....+..... .+|-.-++.++|+| |+++|+++..|..|++-.+.....+... .-+|+.-|..++.-++
T Consensus 131 ~~~~di~s~~~~~~~~~--lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH~eFVS~isl~~~ 205 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPI--LGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPATFVIESF-CLGHKEFVSTISLTDN 205 (390)
T ss_pred ceeeeeecccccCcchh--hhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcccchhhh-ccccHhheeeeeeccC
Confidence 66778888776555444 49999999999999 9999999999999999887665554432 5579999999999987
Q ss_pred CCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712 162 SPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 190 (458)
. .|++++.|++|++||+++++.+..+.
T Consensus 206 ~--~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 Y--LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred c--eeeecCCCCcEEEEecccCCcccccc
Confidence 5 58999999999999999999876554
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.32 E-value=2.6e-09 Score=105.66 Aligned_cols=288 Identities=11% Similarity=0.059 Sum_probs=160.4
Q ss_pred eEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccc------------cccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 108 FQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGK------------HQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 108 ~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
..+++++. ++..+++-..++.|+++|... .......-.+ .-.....+++++++..++++-...+.|
T Consensus 571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECC-CCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35777761 355667777788999999754 3222110101 112357899999874455555556789
Q ss_pred EEEeCCCCCccceeeecccCC--CCc-----ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCC
Q 012712 176 QHFDLRTGAATELFTCRPIDD--RRN-----YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPA 248 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~--~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 248 (458)
+.+|+.++.. ..+....... ..+ ...-.....++++|+++.++++...++.|++||..++.......-+...
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877643 2221110000 000 0001234689999965777888888899999998765431100000000
Q ss_pred CCcCCCccccccccceeEEEeCCCCcEEEEe-c-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCC
Q 012712 249 DYFCPPNLIGDEQVGITGLAFSDQSELLVSY-N-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTAN 326 (458)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (458)
.... .......-.....++++|++..|..+ . ++.|++||+.++.........+. +. . .+ ....+
T Consensus 728 ~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~--------~~-~--~l--~~fG~ 793 (1057)
T PLN02919 728 NLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT--------FS-D--NL--FKFGD 793 (1057)
T ss_pred cCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--------cC-c--cc--ccccC
Confidence 0000 00000112346789999999854444 3 45899999876431100000000 00 0 00 00000
Q ss_pred cccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-------------cCCceeeEEEe
Q 012712 327 TDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-------------ADRHVVNCIEP 393 (458)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~~~ 393 (458)
.. +...... .. ...++++ +++|+.+++-..+++|++||..++....... +.-.....+++
T Consensus 794 ~d-G~g~~~~--l~---~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIav 866 (1057)
T PLN02919 794 HD-GVGSEVL--LQ---HPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLAL 866 (1057)
T ss_pred CC-Cchhhhh--cc---CCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEE
Confidence 00 0000000 01 1356777 9999988888889999999998776553221 11124778999
Q ss_pred cCCCCeEEEeecCCcEEEecCCcccc
Q 012712 394 HPHSTVLASSGIESDIKILTPNAADR 419 (458)
Q Consensus 394 s~~~~~l~s~~~d~~i~iw~~~~~~~ 419 (458)
+++|+++++-+.+++|++|++.+++.
T Consensus 867 d~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 867 GENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999988888999999999987643
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.6e-09 Score=96.43 Aligned_cols=181 Identities=17% Similarity=0.069 Sum_probs=112.6
Q ss_pred ceEEEEECCCCCcEEEEecC---CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-
Q 012712 205 NLNAIAIDPRNANLFAVAGS---DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN- 280 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 280 (458)
......|+|++...++..+. +..|+++|+.+++.. ......+......|+|||+.|+...
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~----------------~lt~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE----------------KIASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE----------------EEecCCCcEEeeEECCCCCEEEEEEc
Confidence 45688999985433554332 356999999876521 1111234456678999998776543
Q ss_pred -CC--cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcE
Q 012712 281 -DE--FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEY 357 (458)
Q Consensus 281 -~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~ 357 (458)
++ .|+++++.++. .+.+..+... .....| +|||+.
T Consensus 253 ~~g~~~Iy~~dl~~g~---------------------------------------~~~LT~~~~~--d~~p~~-SPDG~~ 290 (419)
T PRK04043 253 PKGQPDIYLYDTNTKT---------------------------------------LTQITNYPGI--DVNGNF-VEDDKR 290 (419)
T ss_pred cCCCcEEEEEECCCCc---------------------------------------EEEcccCCCc--cCccEE-CCCCCE
Confidence 22 58888876532 1222222211 123356 999998
Q ss_pred EEEecCC-C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecC---------CcEEEecCCcccccccccc
Q 012712 358 VVSGSDC-G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIE---------SDIKILTPNAADRATLPTN 425 (458)
Q Consensus 358 l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------~~i~iw~~~~~~~~~~~~~ 425 (458)
|+..+.. + .|++.|+.+++..+.... .. ....|+|||+.|+..... ..|.+.++++++...+...
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 8766532 3 688888877766443322 11 124899999988876543 3678888888876666554
Q ss_pred cccEEEEEEecCCcEEEeeecC
Q 012712 426 IEQVCFSIYSADYWWSKSQNFS 447 (458)
Q Consensus 426 ~~~v~~~~~s~d~~~l~s~~~d 447 (458)
.......|||||+.++..+.+
T Consensus 368 -~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 368 -GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred -CCcCCeEECCCCCEEEEEEcc
Confidence 234468999999888765544
No 288
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=1.9e-11 Score=118.38 Aligned_cols=220 Identities=14% Similarity=0.205 Sum_probs=157.9
Q ss_pred CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCC
Q 012712 118 DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 118 ~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
++.+..+..++...-|..+..... +..+-..+.++.-+|..+ +.++|+.||.+++|....++.+..+...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~~----~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~----- 2249 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASVM----IKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTA----- 2249 (2439)
T ss_pred cccCCcccCCccccceecccceeE----eecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeecc-----
Confidence 344444455566555655443332 344556788888899884 6799999999999998888877666533
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEE
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLV 277 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (458)
....++.+.|+.+ |+.+..+..||.+.+|..... +......|+.....+.|-. ..++
T Consensus 2250 ----g~s~vtr~~f~~q-Gnk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~ 2306 (2439)
T KOG1064|consen 2250 ----GNSRVTRSRFNHQ-GNKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLA 2306 (2439)
T ss_pred ----Ccchhhhhhhccc-CCceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhh
Confidence 2357889999997 688889999999999998732 1223344566666666655 4555
Q ss_pred Eec---CC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 278 SYN---DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 278 ~~~---~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
+.+ ++ .+.+||..-... ...+. ..|... ++++++ -|
T Consensus 2307 tag~s~d~~n~~lwDtl~~~~-----------------------------------~s~v~--~~H~~g--aT~l~~-~P 2346 (2439)
T KOG1064|consen 2307 TAGRSSDNRNVCLWDTLLPPM-----------------------------------NSLVH--TCHDGG--ATVLAY-AP 2346 (2439)
T ss_pred ccccCCCCCcccchhcccCcc-----------------------------------cceee--eecCCC--ceEEEE-cC
Confidence 544 33 699999654211 11222 567665 788888 99
Q ss_pred CCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc
Q 012712 354 KCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA 420 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~ 420 (458)
..+.|++|+.+|.|++||+...++..+++. +. ...++++|+..|.|+||++.....+
T Consensus 2347 ~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2347 KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchh
Confidence 999999999999999999988777666653 44 6678999999999999999876443
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=3.9e-11 Score=102.94 Aligned_cols=287 Identities=12% Similarity=0.111 Sum_probs=187.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc-----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG-----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i 175 (458)
.+|+..|..++-.. +.+.+++++.|.+|++|.++... ......++.|..+|.++.|-.+. +.++ +.||-|
T Consensus 732 ~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~gi 806 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDGGI 806 (1034)
T ss_pred cCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceee--eccCcc
Confidence 78999999888776 78889999999999999987532 12334578899999999999887 3444 457889
Q ss_pred EEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCc
Q 012712 176 QHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPN 255 (458)
Q Consensus 176 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 255 (458)
.+||.--+.....+...+. +...+.|.|+.-- +..-.++.++...+|+++|.+..+........
T Consensus 807 HlWDPFigr~Laq~~dapk-----~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc---------- 870 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPK-----EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVC---------- 870 (1034)
T ss_pred eeecccccchhHhhhcCcc-----cCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEec----------
Confidence 9999877776654432221 1122344444321 22234444578889999999988765432221
Q ss_pred cccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCce
Q 012712 256 LIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQ 334 (458)
Q Consensus 256 ~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (458)
.....+..+++++..|.|..++.+- .|.|.+.|.++++....
T Consensus 871 na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs------------------------------------- 913 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS------------------------------------- 913 (1034)
T ss_pred cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc-------------------------------------
Confidence 1123456789999999999988775 77899999998653332
Q ss_pred eecCccceeeeeEEEEecCCCcEEEEecCCCeEEE-EEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 335 VYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI-WKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 335 ~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
+..... ....++ .|..+.|+....|.++.+ |...++....+.+....+..-+. .-|.-|+++...+.+.+|.
T Consensus 914 -wrpmec--dllqla--apsdq~L~~saldHslaVnWhaldgimh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 914 -WRPMEC--DLLQLA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred -CCcccc--hhhhhc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 222211 133343 467788888888899988 88777766555554333322111 2356677777777777875
Q ss_pred CCcc-------cccccccccccEEEEEEecCCcEEEeeecCCceEE
Q 012712 414 PNAA-------DRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILL 452 (458)
Q Consensus 414 ~~~~-------~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~ 452 (458)
-... .........+..++++--|-..-+..|...|.|.+
T Consensus 987 d~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 987 DSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 3321 11222334455778888787755557788887765
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.3e-10 Score=94.71 Aligned_cols=215 Identities=11% Similarity=0.052 Sum_probs=143.9
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC-CCe
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD-DRR 84 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~ 84 (458)
++...+.+++++-||.++.|.-..-. -.+.+..+..|-+.|.+++.+-+|.++.|.+. |..
T Consensus 16 ~~tka~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 16 FPTKAKFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred eeehhheEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 34556789999999999999876211 12445667889999999999999999999777 999
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCC-eEEEE-EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD-RSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
++++|+++-..+.-+....-...-+...+| .+. ..|+. .-.+|.+.++|-....+.....-.-|..+|..+.++|.+
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCC-CCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 999999876543222111111111222233 011 13333 335789999997766544434355699999999999998
Q ss_pred CeEEEEecCCCeEEEEeCCCC-Cccc---eeeecccCCC-CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 163 PHVFYTCGEDGLVQHFDLRTG-AATE---LFTCRPIDDR-RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~-~~~~---~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
..+++....|.|.-|..+.. +... .+.......+ .-........++.|+|+ +..+.+-+.|..|++++.++++
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccch
Confidence 57888888999999987731 1100 0111000000 00013345789999998 7899999999999999999998
Q ss_pred cCCC
Q 012712 238 WDGS 241 (458)
Q Consensus 238 ~~~~ 241 (458)
+.+.
T Consensus 235 lvqe 238 (558)
T KOG0882|consen 235 LVQE 238 (558)
T ss_pred hhhh
Confidence 6554
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.24 E-value=3e-08 Score=81.32 Aligned_cols=241 Identities=17% Similarity=0.142 Sum_probs=155.5
Q ss_pred CCCCCC-CCCeEEEeeCCCc-EEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec
Q 012712 3 DASNNN-NNKRARTSVDKAL-VDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 3 ~~~~~~-~~~~l~~~~~d~~-i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 80 (458)
.+..+| .+..++.+-.-|+ ..+||..+|+.+... .-..-+.|.|| -.||+||++|++.-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------~a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------WAPPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------cCCCCCEEecC------EEEcCCCCEEEEec
Confidence 345566 5556777776665 669999999877441 11223456777 46999999999864
Q ss_pred C-----CCeEEEEECC-CcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC------------------CCcEEEeecc
Q 012712 81 D-----DRRVILWDWK-TERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA------------------DGQVRHAQIL 136 (458)
Q Consensus 81 ~-----d~~i~iwd~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~------------------dg~i~vw~~~ 136 (458)
. .|.|-|||.. +-+.+.++ ..|.-.-..+.+.| |++.|+.+.. +-.+.+.|..
T Consensus 70 nd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~p--DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~ 146 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMP--DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR 146 (305)
T ss_pred cccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcC--CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence 3 4899999998 44555666 56666677889999 9977777642 1234556667
Q ss_pred cccceeeeec--cccccceEEEEEcCCCCeEEEEecCCCe-------EEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 137 ERGGVETKLL--GKHQGRAHKLAIEPGSPHVFYTCGEDGL-------VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 137 ~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
+++.+....+ ..|...|..+++.++| ..++..-..|. |-+++ .++....+...... .......+-
T Consensus 147 sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~---~~~l~~Y~g 220 (305)
T PF07433_consen 147 SGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQ---WRRLNGYIG 220 (305)
T ss_pred CCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHH---HHhhCCceE
Confidence 7776666556 4477889999999998 45444433331 23332 22222222221110 011334688
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (458)
++++++++....+++-..+.+.+||..++++..... -..+..++-.+++ ++++.+.+.+...
T Consensus 221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----------------l~D~cGva~~~~~-f~~ssG~G~~~~~ 282 (305)
T PF07433_consen 221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----------------LPDACGVAPTDDG-FLVSSGQGQLIRL 282 (305)
T ss_pred EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----------------cCceeeeeecCCc-eEEeCCCccEEEc
Confidence 999999854455666678899999999987654321 2457778887777 7777777765444
Q ss_pred Ec
Q 012712 288 TQ 289 (458)
Q Consensus 288 ~~ 289 (458)
..
T Consensus 283 ~~ 284 (305)
T PF07433_consen 283 SP 284 (305)
T ss_pred cC
Confidence 43
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=1.1e-09 Score=90.46 Aligned_cols=164 Identities=13% Similarity=0.141 Sum_probs=112.8
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec--cCCCcceeEEEEccCCCCeEEEE---EcCCCcEEEeecccc
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVT---CAADGQVRHAQILER 138 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s---~~~dg~i~vw~~~~~ 138 (458)
...+..++++++||.+..+....++++........+. ..-...-+++.|.. +...... ++....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee--ccceEEEEeecCCceeeeeeccccc
Confidence 4455677888999998888877777765443211111 11222334444544 3333333 344555666666553
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
... ..-+|-..++.++++||+ +.++++..|..|++-.......+..+.. | |..-|..++.-++ ..
T Consensus 143 ~~~---~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesfcl-------G--H~eFVS~isl~~~--~~ 207 (390)
T KOG3914|consen 143 RCE---PILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCL-------G--HKEFVSTISLTDN--YL 207 (390)
T ss_pred Ccc---hhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhcc-------c--cHhheeeeeeccC--ce
Confidence 332 267899999999999999 7899999999999988777666666543 2 4446889999874 57
Q ss_pred EEEecCCCeEEEEecCCCccCCCccC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDF 244 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (458)
|++++.|+++++||+++++......+
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeecCCCCcEEEEecccCCcccccch
Confidence 99999999999999999987755443
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.20 E-value=5.5e-08 Score=87.13 Aligned_cols=317 Identities=12% Similarity=0.098 Sum_probs=175.1
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecC-CCceE-EEEEecCCCEEEEecCCCeEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKH-RGCVN-TVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~-~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+.++++++.+|.+.-+|.++|+.+-+..... .. ..+... ...+. .+.. ++..++.++.++.+.-
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~--------~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~a 134 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSE----KD--------GWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYA 134 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCC----cc--------cccccccccccccccEE--ECCEEEEEcCCCEEEE
Confidence 5677888889999999999998875411000 00 000000 00111 1122 3456777888999999
Q ss_pred EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEEEEcCCCCe
Q 012712 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKLAIEPGSPH 164 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~ 164 (458)
+|.++|+.+.+... ...+.+ +|.-.+..++.+..++.+.-+|..+++.+........... ..+-... ++
T Consensus 135 ld~~tG~~~W~~~~--~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-- 206 (394)
T PRK11138 135 LNAEDGEVAWQTKV--AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-- 206 (394)
T ss_pred EECCCCCCcccccC--CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC--
Confidence 99999998777622 222222 1111334566677789999999999887765332211000 0011111 22
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--CCCcEEEEecCCCeEEEEecCCCccCCCc
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP--RNANLFAVAGSDEYTRLYDIRKYKWDGST 242 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (458)
.++.++.+|.+..+|.++++.............. .......+.-+| . +..++.++.+|.+..+|..+++..-..
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~---~~~~~~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT---EIDRLVDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCcc---chhcccccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3566778899999999999876554321110000 000000111111 1 235666778899999999988643221
Q ss_pred cCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCC
Q 012712 243 DFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASP 322 (458)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (458)
.+ .....+.. .++.+++...++.+..+|..+++......
T Consensus 283 ~~-----------------~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~----------------------- 321 (394)
T PRK11138 283 EY-----------------GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQS----------------------- 321 (394)
T ss_pred cC-----------------CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccc-----------------------
Confidence 11 00111111 23445555557789999988764322210
Q ss_pred CCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEEecCCCCeEE
Q 012712 323 STANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLA 401 (458)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~ 401 (458)
.+. ... ..+... .+.+|+.++.+|.++..|..+|+.+...+.....+. ...+ .+..|+
T Consensus 322 ------------~~~-~~~---~~sp~v---~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~ 380 (394)
T PRK11138 322 ------------DLL-HRL---LTAPVL---YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLL 380 (394)
T ss_pred ------------ccC-CCc---ccCCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEE
Confidence 000 000 111111 245677888999999999999998877764333232 2222 244677
Q ss_pred EeecCCcEEEecC
Q 012712 402 SSGIESDIKILTP 414 (458)
Q Consensus 402 s~~~d~~i~iw~~ 414 (458)
.++.||.|..++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999887764
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.20 E-value=6.5e-08 Score=86.69 Aligned_cols=310 Identities=10% Similarity=-0.012 Sum_probs=174.8
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCccee------EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeec
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLL 146 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~------~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~ 146 (458)
+..+++++.++.+.-+|.++|+.+.+.......... .+.-.|..++..++.++.+|.+.-+|..+++.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 557777888899999999999887765322111110 00001111455677788899999999999988765433
Q ss_pred cccccceEE-EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccC-CCCcceeecceEEEEECCCCCcEEEEecC
Q 012712 147 GKHQGRAHK-LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPID-DRRNYMTVVNLNAIAIDPRNANLFAVAGS 224 (458)
Q Consensus 147 ~~~~~~v~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 224 (458)
.+ .+.+ .... ++ .++.+..++.+..+|.++++........... ...+ ...+ ... + ..++.++.
T Consensus 149 ~~---~~~ssP~v~-~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~--~~sP----~v~--~-~~v~~~~~ 213 (394)
T PRK11138 149 AG---EALSRPVVS-DG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG--ESAP----ATA--F-GGAIVGGD 213 (394)
T ss_pred CC---ceecCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC--CCCC----EEE--C-CEEEEEcC
Confidence 32 1111 1111 33 4666778899999999999987666432100 0000 0011 111 1 25666778
Q ss_pred CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCC---CCcEEEEecCCcEEEEEccCCCCCCCCCCC
Q 012712 225 DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSS 301 (458)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~ 301 (458)
+|.+..+|..+++..-......+...... .....+.-+| ++.+++...++.++.+|..+++......
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--------~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-- 283 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEI--------DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-- 283 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccch--------hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--
Confidence 89999999988875433222111100000 0000111112 4555555557789999988764332210
Q ss_pred CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712 302 PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (458)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 381 (458)
+.. ...+.. ++..|+.++.+|.++.+|..+|+.+-..
T Consensus 284 ----------------------------------~~~------~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 284 ----------------------------------YGS------VNDFAV---DGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred ----------------------------------CCC------ccCcEE---ECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 000 011112 3557777788999999999999876543
Q ss_pred ecCC-ceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc-cccccEEE-EEEecCCcEEEeeecCCceEEEE
Q 012712 382 EADR-HVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP-TNIEQVCF-SIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 382 ~~~~-~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~-~~~~~v~~-~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
..-. ....+... .+.+|+.++.||.|.+.|..+++.+... -....+.+ ..+ . +..|+.++.||.|..++
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~-~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-A-DDKLLIQARDGTVYAIT 392 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-E-CCEEEEEeCCceEEEEe
Confidence 2111 11222222 2456778899999999999998765322 12222322 222 2 34667789999988775
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=1.2e-08 Score=79.84 Aligned_cols=203 Identities=13% Similarity=0.031 Sum_probs=134.3
Q ss_pred EEEEec-----CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 66 TVSFNT-----DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 66 ~~~~s~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
.+.|-| ...+||.|+..|...+|...+.+....+...|...|+-+.-.-. ....+..++.|.++++.++..+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcc
Confidence 455555 33589999999999999998777655554455554432221110 223466678888999988865543
Q ss_pred eeeeecccccc--ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 141 VETKLLGKHQG--RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 141 ~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
... .|.. .+.++++++++ .++++.+....|..|.+..... .......+. ...-.+.+|+.. ..
T Consensus 151 ~~~----~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--------~D~gF~~S~s~~-~~ 216 (344)
T KOG4532|consen 151 KFA----VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--------SDHGFYNSFSEN-DL 216 (344)
T ss_pred cce----eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEeccc--------CCCceeeeeccC-cc
Confidence 322 2332 37889999999 6888888888999998865432 222222221 122357789886 68
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc---EEEEecCCcEEEEEccCCC
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE---LLVSYNDEFIYLFTQDMGL 293 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~~~~~~~i~i~~~~~~~ 293 (458)
.+|++..||++.|||++....... ........|.+.++.+.|++.|. ++.+-.-+.+.+.|+++..
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm~----------~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPMA----------EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eEEEEecCCcEEEEEecccccchh----------hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999999999999999998653211 01223445889999999998764 3333335579999998854
No 296
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.19 E-value=2.7e-10 Score=101.16 Aligned_cols=286 Identities=13% Similarity=0.135 Sum_probs=181.8
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc--cceEEEEEcCCC--CeEEEEecCCCeEEEE
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ--GRAHKLAIEPGS--PHVFYTCGEDGLVQHF 178 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~~l~s~~~dg~i~iw 178 (458)
-.+.+.++..+| .|+-++.++.-| +.+-|+........ .-.|. -.+-.+.|+|.. +..+++.+ ...-.+|
T Consensus 23 v~~~~~a~si~p--~grdi~lAsr~g-l~i~dld~p~~ppr--~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiw 96 (1081)
T KOG0309|consen 23 VDGGFNAVSINP--SGRDIVLASRQG-LYIIDLDDPFTPPR--WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIW 96 (1081)
T ss_pred ecCcccceeecc--ccchhhhhhhcC-eEEEeccCCCCCce--eeeccCcchhcceecccCCCCceeEEecC-cchhhhh
Confidence 356788889999 888899888766 55667766544333 11222 245567777653 34444444 3455688
Q ss_pred eCCCCCccc-eeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 179 DLRTGAATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 179 d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
++....... .+.. |.+...++.+-|+|+.+..+++++.|-.+..||+++... +....
T Consensus 97 nlA~ss~~aIef~l--------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--------------p~ys~ 154 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVL--------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--------------PFYST 154 (1081)
T ss_pred hhhcCCccceEEEE--------ecCccceeccccCCCCCcceeeccccccceeeeccCCCc--------------ceeee
Confidence 886543322 1221 226668999999999999999999999999999998642 11112
Q ss_pred cccccceeEEEeCC-CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 258 GDEQVGITGLAFSD-QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 258 ~~~~~~i~~~~~~~-~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
..-......++|+- ++..+|+.....+.+||.+.+ ..+...+
T Consensus 155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~g-------------------------------------s~pl~s~ 197 (1081)
T KOG0309|consen 155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKG-------------------------------------STPLCSL 197 (1081)
T ss_pred ecccccCceeeecccCcchhhhccCCceEEEeccCC-------------------------------------CcceEEe
Confidence 22234556788885 455666666678999999875 3456677
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCceeeEEEecCCCCeEEE--eecCCcEEEe-
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLAS--SGIESDIKIL- 412 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s--~~~d~~i~iw- 412 (458)
++|... +..+.|.......+.+.+.||+|+.||.+..... .....-..+|.--.+-|-|+-... --.+..+.++
T Consensus 198 K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~ 275 (1081)
T KOG0309|consen 198 KGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLR 275 (1081)
T ss_pred ccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeecc
Confidence 776664 7777773334456778899999999998644222 111223345666666665542221 1112244444
Q ss_pred --------cCCcc--cccccccccccEEEEEEecCC----------cEEEeeecCCceEEEEE
Q 012712 413 --------TPNAA--DRATLPTNIEQVCFSIYSADY----------WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 413 --------~~~~~--~~~~~~~~~~~v~~~~~s~d~----------~~l~s~~~d~~i~~w~~ 455 (458)
+..++ ....+.+|...|....|...+ -.|+|=+.|..+++|..
T Consensus 276 c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 276 CENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeec
Confidence 43333 223678888888777665433 46889999999999964
No 297
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=5.1e-08 Score=77.50 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=91.6
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCcc----eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccccee
Q 012712 67 VSFNTDGDILISGSDDRRVILWDWKTER----VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~ 142 (458)
++.+.+|+.||.- .|..|.|=..++.- ......+.....-..++|+| |+.+||.+...|+|+++|+.......
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMGSELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEecccceeEE
Confidence 5677899988865 56778887655431 12233344445677899999 99999999999999999996533221
Q ss_pred ee----eccccccceEEEEEcCCC-----CeEEEEecCCCeEEEEeCCCCC--c---cceeeecccCCCCcceeecceEE
Q 012712 143 TK----LLGKHQGRAHKLAIEPGS-----PHVFYTCGEDGLVQHFDLRTGA--A---TELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 143 ~~----~~~~~~~~v~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~--~---~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.. ........|..+.|.+.. ...|+.-..+|.++-|-+..+. . ...+..... ....|.+
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~-------yp~Gi~~ 152 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH-------YPHGINS 152 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEeccc-------CCCceeE
Confidence 10 011123456666665432 2357777788888877763321 1 112221110 2346899
Q ss_pred EEECCCCCcEEEEecCC
Q 012712 209 IAIDPRNANLFAVAGSD 225 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~d 225 (458)
+.++|. .++|++|+..
T Consensus 153 ~vy~p~-h~LLlVgG~~ 168 (282)
T PF15492_consen 153 AVYHPK-HRLLLVGGCE 168 (282)
T ss_pred EEEcCC-CCEEEEeccC
Confidence 999997 5677766643
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.16 E-value=3.6e-07 Score=76.18 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=135.2
Q ss_pred EEEEec-CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEc-cCCCCeEEEEEcCCCcEEEeecccccceee
Q 012712 66 TVSFNT-DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIM-PFTDDRSIVTCAADGQVRHAQILERGGVET 143 (458)
Q Consensus 66 ~~~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~ 143 (458)
++.|.+ ++.++++--..+.|..|+..+++..... .. . ...+++. + ++.++++. . +.+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~--~~-~-~~G~~~~~~--~g~l~v~~-~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID--LP-G-PNGMAFDRP--DGRLYVAD-S-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE--SS-S-EEEEEEECT--TSEEEEEE-T-TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe--cC-C-CceEEEEcc--CCEEEEEE-c-CceEEEecCCCcEEEE
Confidence 577888 7777777777899999999887654322 11 2 6777777 5 65555554 4 3456668877654333
Q ss_pred eec--cc-cccceEEEEEcCCCCeEEEEecCC--------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 144 KLL--GK-HQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 144 ~~~--~~-~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
... .. .....+.+++.|+| ++.++.... |.|..++.. ++...... .....+.++|+
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-----------~~~~pNGi~~s 142 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-----------GLGFPNGIAFS 142 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-----------EESSEEEEEEE
T ss_pred eeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEec-----------CcccccceEEC
Confidence 222 12 34678899999999 565654432 456666665 33322222 22245778888
Q ss_pred CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712 213 PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (458)
Q Consensus 213 p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~ 292 (458)
|++..++++-+..+.|..+++..... .+... -.+.++.
T Consensus 143 ~dg~~lyv~ds~~~~i~~~~~~~~~~------------------------~~~~~----------------~~~~~~~-- 180 (246)
T PF08450_consen 143 PDGKTLYVADSFNGRIWRFDLDADGG------------------------ELSNR----------------RVFIDFP-- 180 (246)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTC------------------------CEEEE----------------EEEEE-S--
T ss_pred CcchheeecccccceeEEEecccccc------------------------ceeee----------------eeEEEcC--
Confidence 87433444556666777777653210 00000 0001111
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK 372 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~ 372 (458)
.... ..-.+++ +.+|++.++....+.|.+++.
T Consensus 181 ---------------------------------------------~~~g--~pDG~~v-D~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 181 ---------------------------------------------GGPG--YPDGLAV-DSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ---------------------------------------------SSSC--EEEEEEE-BTTS-EEEEEETTTEEEEEET
T ss_pred ---------------------------------------------CCCc--CCCcceE-cCCCCEEEEEcCCCEEEEECC
Confidence 1111 2456777 999998888778899999998
Q ss_pred cCCeEEEEeecCCceeeEEEe-cCCCCeEEEe
Q 012712 373 KGGELIRVIEADRHVVNCIEP-HPHSTVLASS 403 (458)
Q Consensus 373 ~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~ 403 (458)
+ |+.+..+......+++++| -++.+.|...
T Consensus 213 ~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 213 D-GKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp T-SCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred C-ccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 6 9988888766568999999 4676655543
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=6.2e-10 Score=88.66 Aligned_cols=281 Identities=15% Similarity=0.126 Sum_probs=167.1
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceee---eeccccc------------cceEEEEEcCC-CCeEE
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVET---KLLGKHQ------------GRAHKLAIEPG-SPHVF 166 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~---~~~~~~~------------~~v~~~~~~~~-~~~~l 166 (458)
....|+++.|.. .|.+|++|...|.|.++.-........ ..+++|. ..|..+.|..+ +...+
T Consensus 25 ead~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 356799999998 899999999999999997654432111 1134443 34677777644 45567
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcce-eecceEE------EEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYM-TVVNLNA------IAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~------~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
+..+.|.+|++|.+......-.-...-... -|. ..+++++ -..+.. ..++++. . .+
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~--~~~~~~g~~~s~~~l~lprls~h--d~iiaa~-p--~r---------- 165 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDS--FHSPMGGPLTSTKELLLPRLSEH--DEIIAAK-P--CR---------- 165 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccc--cccccCCCcCCHHHhhccccccc--ceEEEec-c--ce----------
Confidence 778899999999987654321111000000 000 0001110 011111 0111110 0 01
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
.....|...|.++.|+.|.+.+.++.+=.|.+|++.-......
T Consensus 166 ---------------vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFn---------------------- 208 (460)
T COG5170 166 ---------------VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFN---------------------- 208 (460)
T ss_pred ---------------eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceE----------------------
Confidence 1123467789999999999999988887999999875321111
Q ss_pred cCCCCCCcccccCceeecCccce---eeeeEEEEecCCC-cEEEEecCCCeEEEEEecCCeE------EEE--e------
Q 012712 320 ASPSTANTDVRIAPQVYKGHRNC---VTVKGVNFFGPKC-EYVVSGSDCGRIFIWKKKGGEL------IRV--I------ 381 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~--~------ 381 (458)
+..++.|... .-|++..| +|.. ..+...+..|.|++-|++...+ +.. +
T Consensus 209 -------------IVDiKP~nmeeLteVItSaeF-hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ 274 (460)
T COG5170 209 -------------IVDIKPHNMEELTEVITSAEF-HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVD 274 (460)
T ss_pred -------------EEeccCccHHHHHHHHhhccc-CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccch
Confidence 1122222211 12566676 7754 4555677789999999974221 111 1
Q ss_pred --ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccc-c-ccccccc------------c---EEEEEEecCCcEEE
Q 012712 382 --EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADR-A-TLPTNIE------------Q---VCFSIYSADYWWSK 442 (458)
Q Consensus 382 --~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~-~-~~~~~~~------------~---v~~~~~s~d~~~l~ 442 (458)
.+-...|..+.|+++|+++++-+. -+++|||+...+. + +++-|.. . -..+.||.|.+.+.
T Consensus 275 ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~ 353 (460)
T COG5170 275 FFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVL 353 (460)
T ss_pred hHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccc
Confidence 112346889999999999987654 5899999876532 2 2222221 1 24578999999999
Q ss_pred eeecCCceEEEE
Q 012712 443 SQNFSCSILLFE 454 (458)
Q Consensus 443 s~~~d~~i~~w~ 454 (458)
+|+..+...++-
T Consensus 354 sgsy~NNfgiyp 365 (460)
T COG5170 354 SGSYSNNFGIYP 365 (460)
T ss_pred ccccccceeeec
Confidence 999888776664
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-09 Score=90.21 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=172.5
Q ss_pred CCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc-eeeeeccccccceEEEEEcCCCCeEEEEecC-CCeEEEEe
Q 012712 102 GHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG-VETKLLGKHQGRAHKLAIEPGSPHVFYTCGE-DGLVQHFD 179 (458)
Q Consensus 102 ~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~-dg~i~iwd 179 (458)
-|...|+.+.-. -.+++.+++.||.++.|.-..-.. .....+..|...+.+++.+-++ .++.+.+. |..++++|
T Consensus 7 mhrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEE
Confidence 478888887765 578999999999999998654222 2223366788999999999998 77888777 99999999
Q ss_pred CCCCCccceeeecccCCCCcceeecceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 180 LRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
++.-.....+....... .-+...+|.+. .+-++.-.++.+.++|-..... ......
T Consensus 83 vEn~DminmiKL~~lPg---------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------------q~~~fk 140 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPG---------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------------QDGYFK 140 (558)
T ss_pred eeccchhhhcccccCCC---------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------------ccceec
Confidence 98876665544322211 11222233111 2233344678999999876531 112344
Q ss_pred cccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 258 GDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
.-|..+|..+.++|.+..+++.. .|-|.-|......+...-. .. ........+..+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~---l~--------------------~~~K~eTdLy~f 197 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN---LN--------------------FELKHETDLYGF 197 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc---cc--------------------ccccccchhhcc
Confidence 55788999999999999888887 5579999877411110000 00 000000011111
Q ss_pred cCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee--------------------------------cC
Q 012712 337 KGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE--------------------------------AD 384 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------------~~ 384 (458)
.-... ...++.| +|+|..+.+-+.|..|++++..+|+.++.+. .|
T Consensus 198 ~K~Kt--~pts~Ef-sp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 198 PKAKT--EPTSFEF-SPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred ccccc--CccceEE-ccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 11112 2567887 9999999999999999999998887665432 11
Q ss_pred Cc-eeeEEEecCCCCeEEEeecCCcEEEecCCccccccccc
Q 012712 385 RH-VVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPT 424 (458)
Q Consensus 385 ~~-~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 424 (458)
.. .-+.+.|...|++|+.++-= -|++.++.++...++.+
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred cCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 11 23556788888988877643 36777777765544433
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.09 E-value=2.3e-07 Score=73.92 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=129.3
Q ss_pred EEEccCCCCeEEEEEcCCCcEEEeecccccc--eee-eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712 110 AKIMPFTDDRSIVTCAADGQVRHAQILERGG--VET-KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (458)
Q Consensus 110 ~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (458)
++.++ +|+.||..- |..|.+=..++.-. +.+ ...+.....=+.++|+||+ .+|+.+...|+|+++|+......
T Consensus 3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 3 LALSS--DGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eeecC--CCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeE
Confidence 34455 777776654 45555554433211 111 1122233345789999999 78999999999999998864332
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCC-----CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRN-----ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (458)
.+... ....+ .....|..|.|.+-. ...|++-...|.++-|-+..+..... .......+.....
T Consensus 79 -~I~p~--~~~~~-d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y-------~e~hsfsf~~~yp 147 (282)
T PF15492_consen 79 -VIPPA--MSFPG-DLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGY-------QENHSFSFSSHYP 147 (282)
T ss_pred -EcCcc--cccCC-ccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcc-------eeeEEEEecccCC
Confidence 22211 11111 123356677675431 23566667788888777643211000 0001112233446
Q ss_pred cceeEEEeCCCCcEEEEecCC-c-----------EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccc
Q 012712 262 VGITGLAFSDQSELLVSYNDE-F-----------IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDV 329 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~-~-----------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (458)
..|.++.++|..++|+.++.. . +..|.+-+
T Consensus 148 ~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~-------------------------------------- 189 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILS-------------------------------------- 189 (282)
T ss_pred CceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcC--------------------------------------
Confidence 789999999998887776522 1 12222111
Q ss_pred ccCceeecCccceeeeeEEEEecCCCcEEEEecCCC------eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712 330 RIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG------RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 330 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
+ +|..+.+. ..+|+ +..+|.+-+.+...........|..|..||||..||+.
T Consensus 190 --------~-------------~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 190 --------D-------------SPYYKQVT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred --------C-------------CCcEEEcc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 1 22222211 11111 12334433222222122245679999999999999999
Q ss_pred ecCCcEEEecCCcccc
Q 012712 404 GIESDIKILTPNAADR 419 (458)
Q Consensus 404 ~~d~~i~iw~~~~~~~ 419 (458)
..+|.|.+|++.+-.+
T Consensus 248 h~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCeEEEEecCcchh
Confidence 9999999999987544
No 302
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=7.3e-10 Score=62.11 Aligned_cols=38 Identities=29% Similarity=0.653 Sum_probs=35.7
Q ss_pred eeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 52 GIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 52 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
++++++++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45678999999999999999999999999999999997
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.07 E-value=2.2e-09 Score=83.39 Aligned_cols=150 Identities=17% Similarity=0.235 Sum_probs=98.2
Q ss_pred CCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecC-----C
Q 012712 9 NNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSD-----D 82 (458)
Q Consensus 9 ~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~-----d 82 (458)
.+..++++..||.+-+.+.+. .. +... ++. .|.+. .+.++...++.+.++.- -
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~--~~-~~~~-----------------~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~ 158 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK--DL-ALMS-----------------RIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQ 158 (319)
T ss_pred cCCceEecCCCceEEEEechH--HH-hhhh-----------------hcccccccc-cccceeecccEEecCCcceEeec
Confidence 356799999999999999884 11 1000 111 11111 12223334555544322 1
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCC
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS 162 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (458)
+..+.|+++..+....- ......|.+++-+|. ....+++|+.||.+.+||.+....+. ..+..|..++..+.|+|..
T Consensus 159 d~~~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~-qq~~v~cgt~dg~~~l~d~rn~~~p~-S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPS-KKALDAVTALCSHPA-QQHLVCCGTDDGIVGLWDARNVAMPV-SLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeeccccccccccc-ccccccchhhhCCcc-cccEEEEecCCCeEEEEEcccccchH-HHHHHhhhhhhheeccCCC
Confidence 34566766543332221 112234999999983 44566778889999999998874433 3478899999999999999
Q ss_pred CeEEEEecCCCeEEEEeCCC
Q 012712 163 PHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~ 182 (458)
+..|+++++||.+..||..+
T Consensus 236 p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chheeEecCCCcEEEEcCCC
Confidence 88999999999999999774
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=9.5e-10 Score=61.64 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=37.0
Q ss_pred CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++++.++++|.+.|++|+|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.00 E-value=1e-06 Score=72.52 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=137.0
Q ss_pred eeEEEEccCCCCeEEEEEcCCCc-EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEec-----CCCeEEEEeC
Q 012712 107 VFQAKIMPFTDDRSIVTCAADGQ-VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCG-----EDGLVQHFDL 180 (458)
Q Consensus 107 i~~~~~~~~~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~ 180 (458)
...++.+|. ....++.+-.-|. ..+||..+++.........-..---.-.|+++| .+|++.- ..|.|-+||.
T Consensus 7 gH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 7 GHGVAAHPT-RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEEC
Confidence 345667772 3455566666554 667888887765542111111111236899999 5666653 3488999999
Q ss_pred C-CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec------------------CCCeEEEEecCCCccCCC
Q 012712 181 R-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG------------------SDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 181 ~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~ 241 (458)
+ +-+.+..+... ......+.+.|| +..|+++. .+..+.+.|..++++..+
T Consensus 85 ~~~~~ri~E~~s~----------GIGPHel~l~pD-G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 85 ARGYRRIGEFPSH----------GIGPHELLLMPD-GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred cCCcEEEeEecCC----------CcChhhEEEcCC-CCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 8 44444444432 223456778898 44555542 223455556666655433
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC----c---EEEEEccCCCCCCCCCCCCccccccccccC
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----F---IYLFTQDMGLGPNPPPSSPVSTRSEASEMG 313 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (458)
..+. ...|...|..+++.++|..++... .+ . +.+++..........
T Consensus 154 ~~Lp-----------~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~--------------- 207 (305)
T PF07433_consen 154 VELP-----------PDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPA--------------- 207 (305)
T ss_pred eecC-----------ccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccC---------------
Confidence 2211 133567899999999998776654 11 1 334433221100000
Q ss_pred CCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEE
Q 012712 314 SDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIE 392 (458)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 392 (458)
.......-.+ .+-++++ ++++.++++.+ ..|.+.+||..+++.+....-. .+..++
T Consensus 208 ------------------p~~~~~~l~~--Y~gSIa~-~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva 264 (305)
T PF07433_consen 208 ------------------PEEQWRRLNG--YIGSIAA-DRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVA 264 (305)
T ss_pred ------------------ChHHHHhhCC--ceEEEEE-eCCCCEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeee
Confidence 0000111112 4788998 99998776554 5678999999999988776543 356777
Q ss_pred ecCCCCeEEEeecCCcEE
Q 012712 393 PHPHSTVLASSGIESDIK 410 (458)
Q Consensus 393 ~s~~~~~l~s~~~d~~i~ 410 (458)
-.+++ ++++.+. |.+.
T Consensus 265 ~~~~~-f~~ssG~-G~~~ 280 (305)
T PF07433_consen 265 PTDDG-FLVSSGQ-GQLI 280 (305)
T ss_pred ecCCc-eEEeCCC-ccEE
Confidence 77766 6665553 4433
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=1.7e-06 Score=72.20 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=133.0
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC-CCCCcEEEEecCCCeEEEEec
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID-PRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~i~d~ 233 (458)
+..|.+....++++-...+.|..|+..+++... +.. . ....+++. ++ + .++.+...+ +.++|.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-----------~-~~~G~~~~~~~-g-~l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-----------P-GPNGMAFDRPD-G-RLYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-----------S-SEEEEEEECTT-S-EEEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-----------C-CCceEEEEccC-C-EEEEEEcCc-eEEEec
Confidence 578888444788888788999999998875432 221 1 25677777 54 4 444455544 566688
Q ss_pred CCCccCCCccCCCCCCCcCCCccc-cc-cccceeEEEeCCCCcEEEEecCC---------cEEEEEccCCCCCCCCCCCC
Q 012712 234 RKYKWDGSTDFGQPADYFCPPNLI-GD-EQVGITGLAFSDQSELLVSYNDE---------FIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~~---------~i~i~~~~~~~~~~~~~~~~ 302 (458)
.+++..... ... .. .....+.+++.|+|++.++.... .++.++...
T Consensus 68 ~~g~~~~~~------------~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~----------- 124 (246)
T PF08450_consen 68 DTGKVTVLA------------DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG----------- 124 (246)
T ss_dssp TTTEEEEEE------------EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-----------
T ss_pred CCCcEEEEe------------eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-----------
Confidence 876532111 111 11 34678899999999977775532 244444431
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCCCeEEEEEecCC-e-E--
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDCGRIFIWKKKGG-E-L-- 377 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~-~-~-- 377 (458)
+......+-. ..+.++| +|+++.|+ +-+..+.|..+++... . .
T Consensus 125 ----------------------------~~~~~~~~~~---~pNGi~~-s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 125 ----------------------------KVTVVADGLG---FPNGIAF-SPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp ----------------------------EEEEEEEEES---SEEEEEE-ETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred ----------------------------eEEEEecCcc---cccceEE-CCcchheeecccccceeEEEeccccccceee
Confidence 1111111111 2578888 99998776 5567789999998632 2 1
Q ss_pred EEE---eecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEe-cCCcEEE
Q 012712 378 IRV---IEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYS-ADYWWSK 442 (458)
Q Consensus 378 ~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~ 442 (458)
.+. +....+..-.+++..+|++.++....+.|.+++.+......+.-....+++++|. |+.+.|.
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 122 2222235788999999998888778899999999843333333334589999995 6665443
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.6e-09 Score=98.45 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=180.1
Q ss_pred EeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC-
Q 012712 50 RLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG- 128 (458)
Q Consensus 50 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg- 128 (458)
+++..+.|..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|...... ..|...|+.+.-+. +|..+++.+.-.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~--dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSV--DGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccC--CcceeeeeccccC
Confidence 45677888999999999999999999999999999999999999887777 79999999999888 998887766533
Q ss_pred -cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceE
Q 012712 129 -QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLN 207 (458)
Q Consensus 129 -~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (458)
...+|++.+-... .+.+ ..-.++.|+... ..-+.|+......+||++++.....+...... ....-+
T Consensus 1167 PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~------~~y~~n 1234 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGP-RHSF----DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVT------SSYSNN 1234 (1516)
T ss_pred chHHHhccccccCc-cccc----cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchh------hhhhcc
Confidence 4678998652211 1112 345678888765 33344444457889999999887764322111 111236
Q ss_pred EEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEE
Q 012712 208 AIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLF 287 (458)
Q Consensus 208 ~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~ 287 (458)
+..|+|++ .+++ .|| .+||++..+.... +.... .-..=.|+|.|.-++..+ .||
T Consensus 1235 ~a~FsP~D-~LIl---ndG--vLWDvR~~~aIh~---------------FD~ft-~~~~G~FHP~g~eVIINS----EIw 1288 (1516)
T KOG1832|consen 1235 LAHFSPCD-TLIL---NDG--VLWDVRIPEAIHR---------------FDQFT-DYGGGGFHPSGNEVIINS----EIW 1288 (1516)
T ss_pred ccccCCCc-ceEe---eCc--eeeeeccHHHHhh---------------hhhhe-ecccccccCCCceEEeec----hhh
Confidence 88999984 5655 455 5799987653221 11001 112235889887666544 478
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-----
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS----- 362 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~----- 362 (458)
|+++-+....++ .-. -..+.| ...|..++..-
T Consensus 1289 D~RTF~lLh~VP--------------------------------------~Ld----qc~VtF-NstG~VmYa~~~~~d~ 1325 (1516)
T KOG1832|consen 1289 DMRTFKLLHSVP--------------------------------------SLD----QCAVTF-NSTGDVMYAMLNIEDV 1325 (1516)
T ss_pred hhHHHHHHhcCc--------------------------------------ccc----ceEEEe-ccCccchhhhhhhhhh
Confidence 888743222211 111 123344 55555443221
Q ss_pred -CC-----------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeec---------CCcEEEecCCc
Q 012712 363 -DC-----------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGI---------ESDIKILTPNA 416 (458)
Q Consensus 363 -~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------d~~i~iw~~~~ 416 (458)
.| ...+-++..+.+.+.++.. ...+..++-+|...+|+.--. +...++|.+..
T Consensus 1326 ~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v-~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r~yEIGR 1399 (1516)
T KOG1832|consen 1326 MSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV-DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSARMYEIGR 1399 (1516)
T ss_pred hhhhcccccccchhhhhccccccccccceeeec-ccchhhhhcCCccceEEEEeccChhhhhhhhhhhhhhhhcc
Confidence 00 1244556556667777764 346778888888887776422 23577776643
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=2.8e-09 Score=86.28 Aligned_cols=158 Identities=16% Similarity=0.139 Sum_probs=114.6
Q ss_pred EEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCC
Q 012712 167 YTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQ 246 (458)
Q Consensus 167 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (458)
++.+.+..+-+-|++++.... +. ..+.|.++.|... ++++..|..+|.|..+|++....-..
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~-----------sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~----- 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQ-----------SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNG----- 289 (425)
T ss_pred ecccccceeEEEEeecccccc-cc-----------cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCC-----
Confidence 556667778899998885432 22 3446888899886 68999999999999999998632111
Q ss_pred CCCCcCCCccccccccceeEEEeCC-CCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCC
Q 012712 247 PADYFCPPNLIGDEQVGITGLAFSD-QSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPST 324 (458)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (458)
-....-.|...|+++.... ++++|++.+ +++|.+||++..+.
T Consensus 290 ------~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------------------------------ 333 (425)
T KOG2695|consen 290 ------WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------------------------------ 333 (425)
T ss_pred ------cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------------------------------
Confidence 0112223677888888776 566555554 88999999987432
Q ss_pred CCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC
Q 012712 325 ANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD 384 (458)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 384 (458)
...+..+.||.+...-.-+-. .+....++++++|...|||.+.+|.++.++...
T Consensus 334 -----~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 334 -----KKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred -----ccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 234778889887644444444 777889999999999999999999999888643
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.7e-08 Score=79.21 Aligned_cols=95 Identities=13% Similarity=0.149 Sum_probs=78.1
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
+++.+-.+.+... .+..+...|..++|+|....++..++.+..|++.|+++...+..+... ..+.++
T Consensus 175 v~~l~~~~fkssq--~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-----------~~~wSC 241 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ--ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-----------NQIWSC 241 (463)
T ss_pred eEEeccCCcchhh--cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-----------CCceee
Confidence 4555544444433 377788999999999998568899999999999999999888777642 368999
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
+|.-++.++++.|..+|.|.+||++..+
T Consensus 242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 242 CWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeccCCcceeEEeccCceEEEEEccCCC
Confidence 9999888999999999999999999765
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.5e-07 Score=85.25 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=127.3
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
++.++-|.-+|.|++.+.+ |.. .+ ...|... ..+|.+++||+.||.|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~-~~~-~~---------------------~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQ-GNP-KT---------------------NFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecC-Ccc-cc---------------------ccccccc------ccCCceEEEecCCCcEEEee
Confidence 4567788888888888877 433 22 1234333 55799999999999999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCC-----CeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH 164 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 164 (458)
+.+.+...++ ....++.+++++| + .+.+++|+..| +.++.-.--+......+..-.++|.++.|.. +
T Consensus 100 l~~~~~~~~~--df~rpiksial~P--d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~ 171 (846)
T KOG2066|consen 100 LFTDDEITQY--DFKRPIKSIALHP--DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---N 171 (846)
T ss_pred ccCCccceeE--ecCCcceeEEecc--chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---c
Confidence 9888876665 4567899999999 6 57799999888 7776543222222223555678999999975 5
Q ss_pred EEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 165 VFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 165 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
+++=+..+| |++||+.+++.+..+..+..... ...-...+.|.++ ..++.|-.| +|++..++.+
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~~--~~LVIGW~d-~v~i~~I~~~ 235 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQDE--DRLVIGWGD-SVKICSIKKR 235 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecCC--CeEEEecCC-eEEEEEEecc
Confidence 677777776 89999999887766654432111 2223456788875 467666555 6999988843
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2e-07 Score=77.45 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=76.0
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCe-EEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDR-SIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (458)
+++.+..+.+... ++.+|...|.+++|+| ..+ ++..++.+..|+|.|+++...+.. +..+ ..+++++|.-+..
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp--~~~GLl~~asl~nkiki~dlet~~~vss--y~a~-~~~wSC~wDlde~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSP--FNEGLLGLASLGNKIKIMDLETSCVVSS--YIAY-NQIWSCCWDLDER 248 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCc--cccceeeeeccCceEEEEecccceeeeh--eecc-CCceeeeeccCCc
Confidence 4455544444433 5577888999999999 444 788899999999999998877665 4445 7899999999988
Q ss_pred eEEEEecCCCeEEEEeCCCCCc
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAA 185 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~ 185 (458)
+.+++|...|.|.+||++..+-
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred ceeEEeccCceEEEEEccCCCc
Confidence 9999999999999999997654
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=5.6e-09 Score=84.56 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=112.6
Q ss_pred EEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc----cceeeeeccccccc
Q 012712 77 ISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER----GGVETKLLGKHQGR 152 (458)
Q Consensus 77 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~----~~~~~~~~~~~~~~ 152 (458)
++.+.+..|-+-|++++.. ..+ .....|.++.|.. .++++..|..+|.|...|++.. ..... .-.|...
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~--rlyh~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ--RLYHDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc-ccc--ccchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcceE--EEEcCcc
Confidence 4555667788889888764 444 3567899999998 8899999999999999999875 22222 3348899
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEe
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYD 232 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d 232 (458)
|+++..-.-....|++.+.+|+|++||++.-++..... ..++|.......-+-..+. ...+++++.|...+||.
T Consensus 301 vtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~-----qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 301 VTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVM-----QYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWS 374 (425)
T ss_pred hhhhhhhccccceEeeccCcCceeEeeehhhhccccee-----eeecccccccccccccccc-cceEEEccCeeEEEEEe
Confidence 99998877333678889999999999999777632221 1124434444444556666 45788899999999999
Q ss_pred cCCCccCCCccC
Q 012712 233 IRKYKWDGSTDF 244 (458)
Q Consensus 233 ~~~~~~~~~~~~ 244 (458)
++.+.++....+
T Consensus 375 l~~ghLl~tipf 386 (425)
T KOG2695|consen 375 LDSGHLLCTIPF 386 (425)
T ss_pred cccCceeeccCC
Confidence 999887665443
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=4.6e-07 Score=75.41 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=128.3
Q ss_pred CCCcEEEEEccccccccccccccccccccceEEeeeeeEee-cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCccee
Q 012712 18 DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLD-KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK 96 (458)
Q Consensus 18 ~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~ 96 (458)
++|.|..||..+|+.+.+ ..+. ...+.+ +. ..+++..+++++.++.|..||..+|+.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~-------------------~~~~~~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWS-------------------YDLGPGIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVL 59 (238)
T ss_dssp -TSEEEEEETTTTEEEEE-------------------EECSSSCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEE
T ss_pred CCCEEEEEECCCCCEEEE-------------------EECCCCCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 378999999999998855 1121 122222 11 2335667777788999999999999988
Q ss_pred eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-eccccc-cceEEEEEcCCCCeEEEEecCCCe
Q 012712 97 LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-LLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 97 ~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
.++.. ...+...... ++..++.+..++.+..+|..+++..... ...... ...........+ ..++.+..++.
T Consensus 60 W~~~~--~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~ 133 (238)
T PF13360_consen 60 WRFDL--PGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGK 133 (238)
T ss_dssp EEEEC--SSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSE
T ss_pred EEeec--cccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCc
Confidence 77632 2222211122 4455666667789999999998877652 211111 111112222224 45677777999
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecce-EEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNL-NAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
|..+|+++|+.+...................+ ..+.+. + + .++.+..++.+.-+|+.+++..-
T Consensus 134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~v~~~~~~g~~~~~d~~tg~~~w------------- 197 (238)
T PF13360_consen 134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-D-G-RVYVSSGDGRVVAVDLATGEKLW------------- 197 (238)
T ss_dssp EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-T-T-EEEEECCTSSEEEEETTTTEEEE-------------
T ss_pred EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-C-C-EEEEEcCCCeEEEEECCCCCEEE-------------
Confidence 99999999998777665221110000000111 233333 3 4 66666667754434998876221
Q ss_pred CccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCC
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGL 293 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~ 293 (458)
......+..+ ...++..|+..+ ++.+..||+.+++
T Consensus 198 ----~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 ----SKPISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ----EECSS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ----EecCCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 0001122221 234555555555 7789999999864
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=1.4e-05 Score=62.99 Aligned_cols=147 Identities=17% Similarity=0.073 Sum_probs=96.2
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEE
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~i 87 (458)
....+++.|+-.+.+.--|.++|++..+ +. -...|-+-+.- -|++++.|...|.+.+
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We-------------------~i---lg~RiE~sa~v-vgdfVV~GCy~g~lYf 77 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWE-------------------AI---LGVRIECSAIV-VGDFVVLGCYSGGLYF 77 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEee-------------------hh---hCceeeeeeEE-ECCEEEEEEccCcEEE
Confidence 3467788888889999899998887744 11 12233332222 4778999999999999
Q ss_pred EECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEE
Q 012712 88 WDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFY 167 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 167 (458)
-+.++|+....+.....-.+ .....+ ++.++..++.|+.....|..+...+.. .+.......+-+..|.. .-|+
T Consensus 78 l~~~tGs~~w~f~~~~~vk~-~a~~d~--~~glIycgshd~~~yalD~~~~~cVyk--skcgG~~f~sP~i~~g~-~sly 151 (354)
T KOG4649|consen 78 LCVKTGSQIWNFVILETVKV-RAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYK--SKCGGGTFVSPVIAPGD-GSLY 151 (354)
T ss_pred EEecchhheeeeeehhhhcc-ceEEcC--CCceEEEecCCCcEEEecccccceEEe--cccCCceeccceecCCC-ceEE
Confidence 99999987777632222222 223455 889999999999999999998887765 33233333344455533 2355
Q ss_pred EecCCCeEEEEeCCCC
Q 012712 168 TCGEDGLVQHFDLRTG 183 (458)
Q Consensus 168 s~~~dg~i~iwd~~~~ 183 (458)
.+...|.+.--..+..
T Consensus 152 ~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 152 AAITAGAVLAVTKNPY 167 (354)
T ss_pred EEeccceEEEEccCCC
Confidence 5556666665555544
No 315
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.90 E-value=1.9e-06 Score=75.91 Aligned_cols=303 Identities=14% Similarity=0.164 Sum_probs=153.8
Q ss_pred ecCCCEEEEec---------CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 70 NTDGDILISGS---------DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 70 s~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
|||+++++... ..+.+.|||+++++..... .....+....|+| +|+.++... ++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CCccccccceeec--CCCeeEEEe-cCceEEEECCCCCe
Confidence 67888777632 2467899999987764433 2257889999999 999999886 47899998876643
Q ss_pred eeeeeccc-------c---------ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeec
Q 012712 141 VETKLLGK-------H---------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVV 204 (458)
Q Consensus 141 ~~~~~~~~-------~---------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (458)
.+. ...+ - -+.-..+-|+|++.++++.--.+..|..+.+..-...... -.
T Consensus 76 ~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~-------------yp 141 (353)
T PF00930_consen 76 TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQ-------------YP 141 (353)
T ss_dssp EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTES-------------S-
T ss_pred EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCcccc-------------CC
Confidence 321 1222 0 1123568899999655555445555544433211110000 00
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec-CC
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN-DE 282 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-~~ 282 (458)
.+..+.+ |.-|.--. .-.+.++|+.+++.... .+..........+..+.|.++++ +++.-. .+
T Consensus 142 ~~~~~~Y-Pk~G~~np----~v~l~v~~~~~~~~~~~----------~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~ 206 (353)
T PF00930_consen 142 EVESIRY-PKAGDPNP----RVSLFVVDLASGKTTEL----------DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD 206 (353)
T ss_dssp EEEEEE---BTTS-------EEEEEEEESSSTCCCEE-------------HHHHTSSEEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccccc-CCCCCcCC----ceEEEEEECCCCcEEEe----------eeccccCCCccCcccceecCCCcEEEEEEcccC
Confidence 1233333 21011111 11366788877653210 01111122356789999999998 444333 22
Q ss_pred ----cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC-cE
Q 012712 283 ----FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC-EY 357 (458)
Q Consensus 283 ----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~-~~ 357 (458)
.+.+.|..++..... ......+-... .....++.+++ .+
T Consensus 207 q~~~~l~~~d~~tg~~~~~----------------------------------~~e~~~~Wv~~--~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 207 QNRLDLVLCDASTGETRVV----------------------------------LEETSDGWVDV--YDPPHFLGPDGNEF 250 (353)
T ss_dssp STEEEEEEEEECTTTCEEE----------------------------------EEEESSSSSSS--SSEEEE-TTTSSEE
T ss_pred CCEEEEEEEECCCCceeEE----------------------------------EEecCCcceee--ecccccccCCCCEE
Confidence 266667655321100 00000011010 12333322444 45
Q ss_pred EEEecCCCe--EEEEEecCCeEEEEeecCCceee-EEEecCCCCeEE-EeecC--C--cEEEecCC-ccccccccccccc
Q 012712 358 VVSGSDCGR--IFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLA-SSGIE--S--DIKILTPN-AADRATLPTNIEQ 428 (458)
Q Consensus 358 l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~-s~~~d--~--~i~iw~~~-~~~~~~~~~~~~~ 428 (458)
|.....+|. |++++...+. .+.+....-.|. -+.|+++++.|. ++..+ + .|..-++. +++...+......
T Consensus 251 l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~ 329 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD 329 (353)
T ss_dssp EEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST
T ss_pred EEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC
Confidence 555556664 5555654454 445554455564 477888877554 44432 2 44445566 5555555544444
Q ss_pred EEEEEEecCCcEEEe
Q 012712 429 VCFSIYSADYWWSKS 443 (458)
Q Consensus 429 v~~~~~s~d~~~l~s 443 (458)
...+.|||+|++++-
T Consensus 330 ~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 330 HYSASFSPDGKYYVD 344 (353)
T ss_dssp TEEEEE-TTSSEEEE
T ss_pred ceEEEECCCCCEEEE
Confidence 479999999988764
No 316
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.89 E-value=1.3e-06 Score=72.70 Aligned_cols=233 Identities=17% Similarity=0.112 Sum_probs=132.3
Q ss_pred CCeEEEEECCCcceeeeeccCCCcceeEEE--EccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 82 DRRVILWDWKTERVKLSFHSGHNDNVFQAK--IMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 82 d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
+++|..||..+|+.+.+.... ..+.... ..+ ++..+++++.++.+..||..+++.+....+....... . ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-~~ 74 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG--PGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-VV 74 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS--SSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-EE
T ss_pred CCEEEEEECCCCCEEEEEECC--CCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-ee
Confidence 689999999999988877321 1122222 232 5566777788999999999999887765553322222 1 22
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccC
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
.++ .++.++.++.+..+|.++++.............. ........+. +..++++..++.|..+|+++++..
T Consensus 75 ~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 75 DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEE
T ss_pred ccc--ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEe---cCEEEEEeccCcEEEEecCCCcEE
Confidence 233 4566667889999999999987764221110000 0011222232 357777888999999999998865
Q ss_pred CCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 240 GSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
.......+.... .. .....+..-....++..+++..++.+..+|+.++..
T Consensus 146 w~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~------------------------- 195 (238)
T PF13360_consen 146 WKYPVGEPRGSS----PI-SSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK------------------------- 195 (238)
T ss_dssp EEEESSTT-SS------E-EEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE-------------------------
T ss_pred EEeecCCCCCCc----ce-eeecccccceEEECCEEEEEcCCCeEEEEECCCCCE-------------------------
Confidence 443321111000 00 001112222233355555555566544448877421
Q ss_pred cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEE
Q 012712 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIR 379 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 379 (458)
.-... .. ..... . ..++..|+.++.++.|..||+.+|+.+-
T Consensus 196 -------------~w~~~--~~--~~~~~-~-~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 196 -------------LWSKP--IS--GIYSL-P-SVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -------------EEEEC--SS---ECEC-E-ECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -------------EEEec--CC--CccCC-c-eeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 11111 11 12221 1 4677788888799999999999998764
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.87 E-value=3.2e-07 Score=86.98 Aligned_cols=228 Identities=14% Similarity=0.160 Sum_probs=132.4
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
..|.++.|..+ .+-++.+...|.|.+-|..+.. ......-...|.+++|+||+++++..+.+.
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~----------------~eivg~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDPETLE----------------LEIVGNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEcccccc----------------eeeeeeccCceEEEeecCCCcEEEEEeCCc
Confidence 46889999987 6788888899999999887764 233444567899999999999999888654
Q ss_pred EEEEEccCCCCCCCCCCC----------CccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSS----------PVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP 353 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 353 (458)
..++...+-......+.. ..........+.....+.+........ +.......+.. -..+.| --
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e--k~~~~~~~~~~---~~~IsW-Rg 205 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE--KALEQIEQDDH---KTSISW-RG 205 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc--ccccchhhccC---CceEEE-cc
Confidence 333332221111111100 000000000111111111110000000 00000011111 245777 89
Q ss_pred CCcEEEE-----ecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe---ecCCcEEEecCCccccc----c
Q 012712 354 KCEYVVS-----GSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS---GIESDIKILTPNAADRA----T 421 (458)
Q Consensus 354 ~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---~~d~~i~iw~~~~~~~~----~ 421 (458)
||+|+|+ ......|++||.+ |.+-.+-....+.=.+++|-|.|..+|+- ..|+.|.++...+-+.. .
T Consensus 206 Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~ 284 (1265)
T KOG1920|consen 206 DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP 284 (1265)
T ss_pred CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence 9999997 3333789999986 43332222223334679999999999875 34668999987654322 3
Q ss_pred cccccccEEEEEEecCCcEEEe---eecCCceEEEEE
Q 012712 422 LPTNIEQVCFSIYSADYWWSKS---QNFSCSILLFEW 455 (458)
Q Consensus 422 ~~~~~~~v~~~~~s~d~~~l~s---~~~d~~i~~w~~ 455 (458)
.+.....+..++|+.++..||. ......|++|-.
T Consensus 285 ~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 285 FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CcccccchheeeecCCCCceeeeecccccceEEEEEe
Confidence 3334444999999999999987 444445999953
No 318
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.87 E-value=1.9e-06 Score=73.24 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=130.2
Q ss_pred ECCCcceeeeeccCCCc-----ceeEEEEccCCCCeEEEEEcC-CC--cEEEeecccccceeeeeccccc-cceEEEEEc
Q 012712 89 DWKTERVKLSFHSGHND-----NVFQAKIMPFTDDRSIVTCAA-DG--QVRHAQILERGGVETKLLGKHQ-GRAHKLAIE 159 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~l~s~~~-dg--~i~vw~~~~~~~~~~~~~~~~~-~~v~~~~~~ 159 (458)
|..+|..+.++ ..... -.+.-+|.+ ||+.|+.++. +| .+.+.|+.+++..+. .... .......++
T Consensus 16 D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~--dG~kllF~s~~dg~~nly~lDL~t~~i~QL---Tdg~g~~~~g~~~s 89 (386)
T PF14583_consen 16 DPDTGHRVTRL-TPPDGHSHRLYFYQNCFTD--DGRKLLFASDFDGNRNLYLLDLATGEITQL---TDGPGDNTFGGFLS 89 (386)
T ss_dssp -TTT--EEEE--S-TTS-EE---TTS--B-T--TS-EEEEEE-TTSS-EEEEEETTT-EEEE------SS-B-TTT-EE-
T ss_pred CCCCCceEEEe-cCCCCcccceeecCCCcCC--CCCEEEEEeccCCCcceEEEEcccCEEEEC---ccCCCCCccceEEe
Confidence 55667666655 22222 223345677 8877666554 54 466667777665543 3222 223346667
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEE--CCCCCcEEEEec--------------
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAI--DPRNANLFAVAG-------------- 223 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~-------------- 223 (458)
|+++.+++ ......|+-.|+++.+....+..+.. .+....| +.+ +..++-.-
T Consensus 90 ~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~p~~----------~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~ 157 (386)
T PF14583_consen 90 PDDRALYY-VKNGRSLRRVDLDTLEERVVYEVPDD----------WKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKG 157 (386)
T ss_dssp TTSSEEEE-EETTTEEEEEETTT--EEEEEE--TT----------EEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHH
T ss_pred cCCCeEEE-EECCCeEEEEECCcCcEEEEEECCcc----------cccccceeeCCC-ccEEEEEEEeehhccCccccHH
Confidence 88754444 43446889999999887666654321 1222333 333 33332211
Q ss_pred --------CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCC---c--EEEEEc
Q 012712 224 --------SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDE---F--IYLFTQ 289 (458)
Q Consensus 224 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~---~--i~i~~~ 289 (458)
....|...|+.+++. ...-.....+..+.|+|.. .+|+.|.+| . -++|-+
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~----------------~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i 221 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGER----------------KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTI 221 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--E----------------EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEE
T ss_pred HHHHHhhCCCceEEEEECCCCce----------------eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEE
Confidence 012244445554431 1222234567788899965 455555554 2 377877
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEE-----ecCC
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVS-----GSDC 364 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~-----~~~d 364 (458)
++.. ...+.+..+... .+..=.||.|||..|.. ++.+
T Consensus 222 ~~dg-------------------------------------~~~~~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 222 NTDG-------------------------------------SNVKKVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQD 263 (386)
T ss_dssp ETTS----------------------------------------EESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--
T ss_pred EcCC-------------------------------------CcceeeecCCCC-cccccccccCCCCEEEEEeecCCCCc
Confidence 6531 122222223222 23444456999987764 2335
Q ss_pred CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCC----------------cEEEecCCcccccccccccc-
Q 012712 365 GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIES----------------DIKILTPNAADRATLPTNIE- 427 (458)
Q Consensus 365 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~----------------~i~iw~~~~~~~~~~~~~~~- 427 (458)
..|.-+|+.+++....... .....+--++||++++-=+.|. .|++++++.+....+..|..
T Consensus 264 ~~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~s 341 (386)
T PF14583_consen 264 FWIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTS 341 (386)
T ss_dssp EEEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----
T ss_pred eEEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCc
Confidence 5677788888765433222 1234556678998876433332 45667777665443333321
Q ss_pred ----------cEEEEEEecCCcEEE-eeecCCceEEE
Q 012712 428 ----------QVCFSIYSADYWWSK-SQNFSCSILLF 453 (458)
Q Consensus 428 ----------~v~~~~~s~d~~~l~-s~~~d~~i~~w 453 (458)
.-..+.|||||++++ ++...|...||
T Consensus 342 w~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 342 WKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 135688999998875 56677876665
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.4e-07 Score=85.28 Aligned_cols=191 Identities=14% Similarity=0.159 Sum_probs=132.7
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
...++|++++ +++|+-|..+|.|++.+... ..... ..|... .. +|+++++|+.||+|.|-.+-+.+.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~~~~--~~~s~~------~~--~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NPKTN--FDHSSS------IL--EGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-ccccc--cccccc------cc--CCceEEEecCCCcEEEeeccCCcc
Confidence 4567788886 67999999999999999764 33222 245443 44 899999999999999999988877
Q ss_pred eeeeeccccccceEEEEEcCC----CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 141 VETKLLGKHQGRAHKLAIEPG----SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
..... ...++.+++++|+ ....+++|+..| +.++.-+-....... ..+...++|.++.|. +
T Consensus 106 ~~~~d---f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--------~l~~~eG~I~~i~W~---g 170 (846)
T KOG2066|consen 106 ITQYD---FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--------VLSEGEGPIHSIKWR---G 170 (846)
T ss_pred ceeEe---cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--------eeecCccceEEEEec---C
Confidence 65432 4578999999998 235789999988 777653321111111 122256789999997 5
Q ss_pred cEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEcc
Q 012712 217 NLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQD 290 (458)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~ 290 (458)
+++|-++.+| |++||..+.+.....+.+.+ ..........+.|.++.+ |+.|=.++|++..++
T Consensus 171 ~lIAWand~G-v~vyd~~~~~~l~~i~~p~~---------~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 171 NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQ---------SVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEEecCCC-cEEEeccccceeeccCCCCC---------CCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 6999998887 99999999886655433221 111122334677877664 555667788888877
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.85 E-value=1.2e-05 Score=74.03 Aligned_cols=213 Identities=14% Similarity=0.111 Sum_probs=113.4
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceE--EEEEecCCCEEEEecCCCeEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVN--TVSFNTDGDILISGSDDRRVIL 87 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~s~~~~~l~s~~~d~~i~i 87 (458)
+.+++.++.++.|.-.|..+|+.+-+..... ....+...+. .+... ++..++.++.++.|.-
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~---------------~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~A 124 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKL---------------PADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVA 124 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCC---------------CccccccccccCCcEEc-cCCeEEEecCCCeEEE
Confidence 3456777778889989999888775411000 0000000010 11121 2257777888999999
Q ss_pred EECCCcceeeeeccCCCc-ceeEEEEccCCCCeEEEEEc---------CCCcEEEeecccccceeeeeccccc-------
Q 012712 88 WDWKTERVKLSFHSGHND-NVFQAKIMPFTDDRSIVTCA---------ADGQVRHAQILERGGVETKLLGKHQ------- 150 (458)
Q Consensus 88 wd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~s~~---------~dg~i~vw~~~~~~~~~~~~~~~~~------- 150 (458)
+|.++|+.+.++...... .-..+.-+|.-.+..++.++ .+|.+.-+|..+++.+.........
T Consensus 125 lD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 125 LDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTW 204 (488)
T ss_pred EECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCC
Confidence 999999988776322110 00111112211223444443 3678888899888876653332110
Q ss_pred -----------cce-EEEEEcCCCCeEEEEecCCC------------------eEEEEeCCCCCccceeeecccCC--CC
Q 012712 151 -----------GRA-HKLAIEPGSPHVFYTCGEDG------------------LVQHFDLRTGAATELFTCRPIDD--RR 198 (458)
Q Consensus 151 -----------~~v-~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~--~~ 198 (458)
..+ ...++.+.+ .+++.++.++ .|.-+|+++++....++...... ..
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~ 283 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD 283 (488)
T ss_pred CCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence 001 123444444 3566666554 79999999999887765321100 00
Q ss_pred cceeecceEEEE-ECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 199 NYMTVVNLNAIA-IDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 199 ~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
.. ....+..+. ..-.....+++++.+|.+...|.++++..-
T Consensus 284 ~~-s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W 325 (488)
T cd00216 284 GP-NQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS 325 (488)
T ss_pred cC-CCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee
Confidence 00 000111111 111101367888899999999999987543
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.84 E-value=2e-06 Score=77.73 Aligned_cols=294 Identities=11% Similarity=0.008 Sum_probs=162.0
Q ss_pred EEEeeCCCcEEEEEcccccccccc--cccccc---ccccceEEe-eee---eEe---ecCCCceEEEEEe---cCCCEEE
Q 012712 13 ARTSVDKALVDVWLRELGQLSTRN--FALRRR---ASEDLVLRL-GIY---AKL---DKHRGCVNTVSFN---TDGDILI 77 (458)
Q Consensus 13 l~~~~~d~~i~iw~~~~g~~~~~~--~~~~~~---~~~~~~~~~-~~~---~~~---~~h~~~v~~~~~s---~~~~~l~ 77 (458)
+.+|+..|.|+|+-+-+++.+.++ |.+-.. +-.+..+++ ..- ..+ ..|.- .+++. .||++|.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp---~~s~t~g~ydGr~~f 145 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHP---HMSFTDGTYDGRYLF 145 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCC---cccccCCccceeEEE
Confidence 788999999999999999888762 322100 000000000 000 001 01111 12222 2677887
Q ss_pred EecC-CCeEEEEECCCcceeeeeccCCCcceeEEEEc--cCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceE
Q 012712 78 SGSD-DRRVILWDWKTERVKLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAH 154 (458)
Q Consensus 78 s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~ 154 (458)
.-.. +..|-.-+++..++...+.......+..++|- | +..+++.+++..
T Consensus 146 indk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p--~t~yv~~~~e~~-------------------------- 197 (635)
T PRK02888 146 INDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIP--RTGYVFCNGEFR-------------------------- 197 (635)
T ss_pred EecCCCcceEEEECccEeeceeEeCCCccCccccCccccC--CccEEEeCcccc--------------------------
Confidence 7654 45566666666555444433445556666664 4 555555544310
Q ss_pred EEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---C-CeEEE
Q 012712 155 KLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS---D-EYTRL 230 (458)
Q Consensus 155 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---d-g~i~i 230 (458)
+=+.|+|..+..+.-..+.+.+.|.++.+....+... .....++++|+ +.++++.+. . .++..
T Consensus 198 -~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-----------gnpd~v~~spd-Gk~afvTsyNsE~G~tl~e 264 (635)
T PRK02888 198 -IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-----------GNLDNVDTDYD-GKYAFSTCYNSEEGVTLAE 264 (635)
T ss_pred -cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-----------CCcccceECCC-CCEEEEeccCcccCcceee
Confidence 1123444222222333466777788876665555432 23456788997 566666542 2 22222
Q ss_pred EecCCCccCCCccCCCCCCCcCCCccccccccceeEE--------EeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712 231 YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGL--------AFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 302 (458)
.+..... ..+ ++.++|++... .++.|.+.|..+.....
T Consensus 265 m~a~e~d---------------------------~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~------ 310 (635)
T PRK02888 265 MMAAERD---------------------------WVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAG------ 310 (635)
T ss_pred eccccCc---------------------------eEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCC------
Confidence 2221111 122 33456776554 35678899976510000
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeE----
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGEL---- 377 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~---- 377 (458)
......+.-..+ ...+.+ +|||+++++++ .+.++.+.|+.+.+.
T Consensus 311 ---------------------------~~v~~yIPVGKs---PHGV~v-SPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 311 ---------------------------SALTRYVPVPKN---PHGVNT-SPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred ---------------------------cceEEEEECCCC---ccceEE-CCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 112222222222 467777 99999988655 578999999987542
Q ss_pred --------EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 378 --------IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 378 --------~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
+.+.+-. ......+|.++|....|..-|..|..|++..
T Consensus 360 ~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3333332 2345778999999888889999999999886
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.84 E-value=6.7e-07 Score=74.48 Aligned_cols=286 Identities=9% Similarity=0.052 Sum_probs=156.1
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC----------CCcEEEeecccccceeeeecccc-c-
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----------DGQVRHAQILERGGVETKLLGKH-Q- 150 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----------dg~i~vw~~~~~~~~~~~~~~~~-~- 150 (458)
+.+.++|.++++.+-.+..+... .+..+| +++.++++.. .-.|.+||..+-.......++.- .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---NVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---EEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeecccCC---ceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 47999999998887776444433 466789 9998887542 33589999988765544434421 1
Q ss_pred ---cceEEEEEcCCCCeEEEE-ecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC
Q 012712 151 ---GRAHKLAIEPGSPHVFYT-CGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE 226 (458)
Q Consensus 151 ---~~v~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 226 (458)
.....++++.+++.+++. .+--..|.+.|+..++.+..+..+ -|...-|.++.-|.+-+.||
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--------------GC~~iyP~~~~~F~~lC~DG 157 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--------------GCWLIYPSGNRGFSMLCGDG 157 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--------------SEEEEEEEETTEEEEEETTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--------------CEEEEEecCCCceEEEecCC
Confidence 123446778888543332 233457889999988877766532 23333344345688888999
Q ss_pred eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecCCcEEEEEccCCCCCCCCCCCCccc
Q 012712 227 YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
.+....+......... ....+....+..+..-++... +.++....+|.|+-.++.........+
T Consensus 158 sl~~v~Ld~~Gk~~~~---------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~------ 222 (342)
T PF06433_consen 158 SLLTVTLDADGKEAQK---------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKP------ 222 (342)
T ss_dssp CEEEEEETSTSSEEEE---------EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEE------
T ss_pred ceEEEEECCCCCEeEe---------eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCc------
Confidence 9998888743211110 001111111112223334333 445555557778877776532100000
Q ss_pred cccccccCCCCccccCCCCCCcccccCce--eecCccceeeeeEEEEecCCCcEEEEec---CC-------CeEEEEEec
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQ--VYKGHRNCVTVKGVNFFGPKCEYVVSGS---DC-------GRIFIWKKK 373 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~d-------g~i~iwd~~ 373 (458)
..... .-...-.+.--.-+++ ++..+.|+..- .+ ..|.++|+.
T Consensus 223 ------------------------~~~~t~~e~~~~WrPGG~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 223 ------------------------WSLLTDAEKADGWRPGGWQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp ------------------------EESS-HHHHHTTEEE-SSS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred ------------------------ccccCccccccCcCCcceeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 00000 0000000111223444 55444444321 11 158888999
Q ss_pred CCeEEEEeecCCceeeEEEecCCCC-eEEEe-ecCCcEEEecCCccccccccccccc
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHST-VLASS-GIESDIKILTPNAADRATLPTNIEQ 428 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~d~~i~iw~~~~~~~~~~~~~~~~ 428 (458)
+++.+.++.. ..++.+|+.+.|.+ +|.+. ..++.|.+||..+++........+.
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 9999998874 34688999998876 55544 4579999999999987755444443
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.80 E-value=5.3e-06 Score=73.06 Aligned_cols=301 Identities=14% Similarity=0.103 Sum_probs=152.9
Q ss_pred CCCCCeEEEe---------eCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEE
Q 012712 7 NNNNKRARTS---------VDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILI 77 (458)
Q Consensus 7 ~~~~~~l~~~---------~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 77 (458)
|||+++++.. +..+.+.|+|+++++... +......+....|||+|+.+|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~----------------------l~~~~~~~~~~~~sP~g~~~~ 58 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP----------------------LTPPPPKLQDAKWSPDGKYIA 58 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE----------------------SS-EETTBSEEEE-SSSTEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE----------------------CcCCccccccceeecCCCeeE
Confidence 6888887772 235678899999866442 222256788999999999998
Q ss_pred EecCCCeEEEEECCCcceeeeeccCC----------------CcceeEEEEccCCCCeEEEEEcCC-CcEEEeecccccc
Q 012712 78 SGSDDRRVILWDWKTERVKLSFHSGH----------------NDNVFQAKIMPFTDDRSIVTCAAD-GQVRHAQILERGG 140 (458)
Q Consensus 78 s~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~~l~s~~~d-g~i~vw~~~~~~~ 140 (458)
-.. ++.|.+++..++...+....+- -+.-..+.||| |+++|+....| ..|+.+.+.....
T Consensus 59 ~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 59 FVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp EEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEEEEESS
T ss_pred EEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEeeccCC
Confidence 875 5789999987775443332220 11235688999 99999887653 4444444322111
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
... .-..+..+.+-.-|... . .-.+.++|+.+++....-....... ....+..+.|.++ +..|+
T Consensus 136 ~~~-----~yp~~~~~~YPk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~-----~~~yl~~v~W~~d-~~~l~ 199 (353)
T PF00930_consen 136 PDS-----QYPEVESIRYPKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNP-----QDYYLTRVGWSPD-GKRLW 199 (353)
T ss_dssp STE-----SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE---HHHHT-----SSEEEEEEEEEET-TEEEE
T ss_pred ccc-----cCCcccccccCCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCC-----CccCcccceecCC-CcEEE
Confidence 000 00123334442222111 1 1246778888876542211100000 2335789999998 45343
Q ss_pred Ee--cCC---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc---eeEEEeC-CCCcEEE-Eec-CC--cEEEE
Q 012712 221 VA--GSD---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG---ITGLAFS-DQSELLV-SYN-DE--FIYLF 287 (458)
Q Consensus 221 ~~--~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~-~~~~~l~-~~~-~~--~i~i~ 287 (458)
.. ..+ ..+.++|..+++.... ........ .....+. +++..++ ... +| .|+++
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~--------------~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVV--------------LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEE--------------EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEcccCCCEEEEEEEECCCCceeEE--------------EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 33 222 2366777766532110 01111111 1244444 6655443 333 44 47777
Q ss_pred EccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEE-EecCC--
Q 012712 288 TQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVV-SGSDC-- 364 (458)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~-~~~~d-- 364 (458)
+...+. .+.+....- .|..+..++++++.|+ ++..+
T Consensus 266 ~~~~~~---------------------------------------~~~lT~G~~--~V~~i~~~d~~~~~iyf~a~~~~p 304 (353)
T PF00930_consen 266 DLDGGK---------------------------------------PRQLTSGDW--EVTSILGWDEDNNRIYFTANGDNP 304 (353)
T ss_dssp ETTSSE---------------------------------------EEESS-SSS---EEEEEEEECTSSEEEEEESSGGT
T ss_pred cccccc---------------------------------------eeccccCce--eecccceEcCCCCEEEEEecCCCC
Confidence 776531 222322222 2545443488877655 44432
Q ss_pred C--eEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEe
Q 012712 365 G--RIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASS 403 (458)
Q Consensus 365 g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 403 (458)
+ .++.-++..+..+..+....+.-..+.|||++++++-.
T Consensus 305 ~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 305 GERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp TSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred CceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 2 45555555234455665444333689999999987754
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.80 E-value=2.2e-07 Score=85.24 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=133.6
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+..++.|+-...+...|+.+++..+. ..--.+.|.-|+. ++++|.+|...|+|.+-|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~---------------------~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT---------------------TNVSASGVTIMRY--NNRNLFCGDTRGTVFLRD 203 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee---------------------eeccCCceEEEEe--cCcEEEeecccceEEeec
Confidence 34466666566666778776655422 2223334666655 578999999999999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC---------CCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA---------DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
..+.+.++++ ..|++.|.++.. .|++|++||. |.-|+|||++..+.+.. +.-+.++ .-+.|+|
T Consensus 204 ~~s~~~iht~-~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P--I~~~~~P-~flrf~P 275 (1118)
T KOG1275|consen 204 PNSFETIHTF-DAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP--IQFPYGP-QFLRFHP 275 (1118)
T ss_pred CCcCceeeee-eccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCC--cccccCc-hhhhhcc
Confidence 9999999998 899999988766 7889999886 45689999998876654 3333333 5578899
Q ss_pred CCCeEEEEecCCCeEEEEeCCCCC-c-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 161 GSPHVFYTCGEDGLVQHFDLRTGA-A-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 161 ~~~~~l~s~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
.-...++.++..|...+-|..+-. + ...+...+ ....+..+.+++. ++.++.|..+|.|.+|.-
T Consensus 276 sl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p--------~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 276 SLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP--------NGSGISAFDISSN-GDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccceEEEEecccceeeccccccCCCccceeEEcc--------CCCcceeEEecCC-CceEEEecccCcEeeecC
Confidence 877788999999999999843321 1 12222211 2334889999997 799999999999999973
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.79 E-value=1.1e-05 Score=65.76 Aligned_cols=221 Identities=14% Similarity=0.191 Sum_probs=118.8
Q ss_pred eeEeecCCCceEEEEEecCCC-EEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEE
Q 012712 54 YAKLDKHRGCVNTVSFNTDGD-ILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRH 132 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~v 132 (458)
.+.+.+-...+..|+|.|+.+ ++++....+.|...+. +|+.+.++.-.-.+..-.+++.. ++.++++.-.++.+.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--NGRYVLSEERDQRLYI 90 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S--TTEEEEEETTTTEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC--CCEEEEEEcCCCcEEE
Confidence 345667677799999999755 6666777888888886 47777666333346678899987 7877777767899999
Q ss_pred eecccccc-e-----eeeec--c-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC---CCccceeeecccCCCCcc
Q 012712 133 AQILERGG-V-----ETKLL--G-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT---GAATELFTCRPIDDRRNY 200 (458)
Q Consensus 133 w~~~~~~~-~-----~~~~~--~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~ 200 (458)
.++..... + ....+ . .+...+..++|+|.+.. |+.+-......++.++. .............. ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~-L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 167 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR-LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDD--DK 167 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE-EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH---HT
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE-EEEEeCCCChhhEEEccccCccceeecccccccc--cc
Confidence 98844321 1 11111 1 24456899999998844 45556666666776654 21111111111100 00
Q ss_pred eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
.....+.+++++|..+++++....+..|..+| .+++....+.+.... .-....-.....|+|.++|++.++.-
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~------~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF------HGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp --SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG------GG-SS---SEEEEEE-TT--EEEEET
T ss_pred ceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc------cCcccccCCccEEEECCCCCEEEEcC
Confidence 02235789999998888888888999999999 444433322221100 00011123578899999998877776
Q ss_pred CCcEEEE
Q 012712 281 DEFIYLF 287 (458)
Q Consensus 281 ~~~i~i~ 287 (458)
-+..+.|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555554
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.2e-06 Score=78.46 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=107.8
Q ss_pred CCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712 6 NNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (458)
Q Consensus 6 ~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (458)
++..+++++.|++-|.+.+++..+|+.... ...+-.+.+..+..+++..++|.|+..|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~~--------------------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V 100 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRKL--------------------KNEGATGITCVRSVSSVEYLVAAGTASGRV 100 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhcc--------------------cccCccceEEEEEecchhHhhhhhcCCceE
Confidence 456678999999999999999998876643 233455667778889999999999999999
Q ss_pred EEEECCCccee-----eeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEE
Q 012712 86 ILWDWKTERVK-----LSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAI 158 (458)
Q Consensus 86 ~iwd~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~ 158 (458)
.++-+..+.+. ......|...|++++|++ ++..+++|...|+|.+-.+..... .....+......|-.+.+
T Consensus 101 ~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 101 SVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred EeehhhccCCCcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 99988764331 112244788999999999 999999999999999888876211 111223345567777776
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCC
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGA 184 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~ 184 (458)
... .+|++.... -.+++++.+.
T Consensus 179 ~q~--~LLVStl~r--~~Lc~tE~et 200 (726)
T KOG3621|consen 179 LQS--YLLVSTLTR--CILCQTEAET 200 (726)
T ss_pred ccc--eehHhhhhh--hheeecchhH
Confidence 642 455554432 2355555443
No 327
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=4.4e-05 Score=60.22 Aligned_cols=111 Identities=13% Similarity=0.067 Sum_probs=80.4
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
..+++.|+..+.+.--|..+|....+. --...|.+-+.- -|++++.|...|.+.+.+..++......... ..-
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~--ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~v 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA--ILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETV 95 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh--hhCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh--hhh
Confidence 357778888888888899998876654 233445444443 3667999999999999999999776552221 111
Q ss_pred eEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee
Q 012712 153 AHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 191 (458)
-......+++ .+++.++.|++.+..|.++..++...++
T Consensus 96 k~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 96 KVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ccceEEcCCC-ceEEEecCCCcEEEecccccceEEeccc
Confidence 1234456777 6899999999999999999888777654
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=1.8e-08 Score=91.94 Aligned_cols=218 Identities=12% Similarity=0.125 Sum_probs=145.4
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-eEEEEe
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-LVQHFD 179 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-~i~iwd 179 (458)
..|+...+|++|+- +.+.|+.|+..|.|+++++.++..... ..+|...++.+.-+.+|..+|.+++... -..+|+
T Consensus 1098 rd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~sG~~e~s--~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSSGSMEES--VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hccccceeeEEeec--CCceEEeeeccceEEEEEccCcccccc--ccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 56888999999999 999999999999999999999887765 7899999999999999965555555544 467898
Q ss_pred CCC-CCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc
Q 012712 180 LRT-GAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG 258 (458)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (458)
+.. +.....+. .-.++.|+.. ...-+.|+......+||+.+......+-. . ..
T Consensus 1174 ~~s~~~~~Hsf~--------------ed~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt--------~--~~- 1227 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD--------------EDKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLT--------D--TV- 1227 (1516)
T ss_pred cccccCcccccc--------------ccceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcC--------c--ch-
Confidence 764 23333332 3467788765 33444555556789999998764322100 0 00
Q ss_pred ccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 259 DEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 259 ~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
.....-++..|+|+..++.- .=.+||.+.. ..++.|..
T Consensus 1228 ~~~y~~n~a~FsP~D~LIln----dGvLWDvR~~--------------------------------------~aIh~FD~ 1265 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILN----DGVLWDVRIP--------------------------------------EAIHRFDQ 1265 (1516)
T ss_pred hhhhhccccccCCCcceEee----CceeeeeccH--------------------------------------HHHhhhhh
Confidence 11222367789998877652 2257888763 22333332
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEE
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLA 401 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 401 (458)
... .+.. . |+|+|.-++.-+ .|||+.+.+.+.....-. -..+.|+..|..+.
T Consensus 1266 ft~--~~~G-~-FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1266 FTD--YGGG-G-FHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred hee--cccc-c-ccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccchh
Confidence 221 1222 2 499999888766 489999888776654332 24667877777554
No 329
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.72 E-value=0.00014 Score=67.28 Aligned_cols=216 Identities=15% Similarity=0.110 Sum_probs=114.7
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+.+|+.++.++.|.-.|.++|+.+-+...... .. . .........-..+++. +..++.++.|+.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~----~~---~---~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLP----DD---V---IPVMCCDVVNRGVALY--DGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCC----cc---c---ccccccccccccceEE--CCEEEEEcCCCEEEEEE
Confidence 45677777788999999999988754110000 00 0 0000000000112232 34567788899999999
Q ss_pred CCCcceeeeeccCCCcceeEEEEccCC-CCeEEEEEc-----CCCcEEEeecccccceeeeecccc--------------
Q 012712 90 WKTERVKLSFHSGHNDNVFQAKIMPFT-DDRSIVTCA-----ADGQVRHAQILERGGVETKLLGKH-------------- 149 (458)
Q Consensus 90 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~-----~dg~i~vw~~~~~~~~~~~~~~~~-------------- 149 (458)
.++|+.+..........-..+.-+|.- ++..++..+ .+|.|.-+|.++++.+........
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 999998776532111100111111110 444333322 268899899988876644211110
Q ss_pred ---------------ccce-EEEEEcCCCCeEEEEec-C----CC-----------eEEEEeCCCCCccceeeecccCCC
Q 012712 150 ---------------QGRA-HKLAIEPGSPHVFYTCG-E----DG-----------LVQHFDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 150 ---------------~~~v-~~~~~~~~~~~~l~s~~-~----dg-----------~i~iwd~~~~~~~~~~~~~~~~~~ 197 (458)
...+ ..+++.|.. .+++.+. . ++ .|.-.|+++++....++..+....
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w 295 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW 295 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc
Confidence 0111 133666655 3444443 1 12 677889999998877765332211
Q ss_pred CcceeecceEEEEECCCCC--cEEEEecCCCeEEEEecCCCccC
Q 012712 198 RNYMTVVNLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~~~~~ 239 (458)
.........-+....++. ..++.+..+|.+++.|.++++.+
T Consensus 296 -D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 296 -DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred -cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111111122223323332 47889999999999999998864
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.71 E-value=7.6e-06 Score=78.08 Aligned_cols=249 Identities=10% Similarity=0.042 Sum_probs=143.9
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEE
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRL 230 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i 230 (458)
..|.++.|..+. +.++.+...|.|.+.|.++......-. -...|.+++|+|| ...++..+..+++.+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~-----------vd~GI~aaswS~D-ee~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGN-----------VDNGISAASWSPD-EELLALITGRQTLLF 135 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeee-----------ccCceEEEeecCC-CcEEEEEeCCcEEEE
Confidence 578889998887 567777888999999887765433222 3346999999998 688888887777665
Q ss_pred Eec----CCCccC----------CCccCCCCCCCcC-------------CCcccc--ccccceeEEEeCCCCcEEEEe--
Q 012712 231 YDI----RKYKWD----------GSTDFGQPADYFC-------------PPNLIG--DEQVGITGLAFSDQSELLVSY-- 279 (458)
Q Consensus 231 ~d~----~~~~~~----------~~~~~~~~~~~~~-------------~~~~~~--~~~~~i~~~~~~~~~~~l~~~-- 279 (458)
-+- -..+.. -...+++..+.+. ...... .-...=+.+.|--||+++|+.
T Consensus 136 mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 136 MTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred EeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 332 111111 0001111100000 000000 011223468999999999873
Q ss_pred ---cC-CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCC
Q 012712 280 ---ND-EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKC 355 (458)
Q Consensus 280 ---~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~ 355 (458)
.+ ..+++||-+. ..... -..... .-.+++| -|.|
T Consensus 216 ~~~~~~RkirV~drEg-~Lns~--------------------------------------se~~~~--l~~~LsW-kPsg 253 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREG-ALNST--------------------------------------SEPVEG--LQHSLSW-KPSG 253 (1265)
T ss_pred eccCCceeEEEecccc-hhhcc--------------------------------------cCcccc--cccceee-cCCC
Confidence 23 4699999762 11100 000001 1346777 8999
Q ss_pred cEEEEe---cCCCeEEEEEecCCeEEEE----eecCCceeeEEEecCCCCeEEE---eecCCcEEEecCCccccc--ccc
Q 012712 356 EYVVSG---SDCGRIFIWKKKGGELIRV----IEADRHVVNCIEPHPHSTVLAS---SGIESDIKILTPNAADRA--TLP 423 (458)
Q Consensus 356 ~~l~~~---~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s---~~~d~~i~iw~~~~~~~~--~~~ 423 (458)
..+++- +.|+.|.+|.-+ |-.-.. +.....++..++|+.++..||+ ......|++|.+.+-... ...
T Consensus 254 s~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 254 SLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred CeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 998874 345679999863 322222 2223345899999999999987 455556999998875221 111
Q ss_pred cccccEEEEEEecCC-cEEEeeecCCceEEEEEe
Q 012712 424 TNIEQVCFSIYSADY-WWSKSQNFSCSILLFEWL 456 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~-~~l~s~~~d~~i~~w~~~ 456 (458)
...+... +.|+|-- ..|..-..+|...+++|.
T Consensus 333 ~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 333 QFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ecccccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence 1111111 7788765 333333467777776664
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.7e-06 Score=79.16 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=84.7
Q ss_pred EEEEEecCCCEEEEecC----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 65 NTVSFNTDGDILISGSD----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 65 ~~~~~s~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
+-.+|+|...++|.++- .|.|.||- ++|++.... ...-.+++++|+| ..-.|+.+-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccCh--HHHHHhhccccceeEEEecCCcee
Confidence 34679999999988754 47888885 677754333 2223466799999 877888888889999999766554
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 181 (458)
-.. ...|+.+|..+.|+++| ..++++..-|.+.+|...
T Consensus 94 htv--~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTV--VETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eee--ccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 332 55699999999999999 789999999999999765
No 332
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=5.7e-07 Score=82.70 Aligned_cols=184 Identities=18% Similarity=0.263 Sum_probs=132.8
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR 152 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 152 (458)
+..++-|+....+..+|+.+.+..... .-....|.-++. +++.+.+|...|+|.+-|.++.+.+.+ +..|++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht--~~aHs~s 219 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHT--FDAHSGS 219 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeee-eccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeee--eeccccc
Confidence 445667777777888898877765544 223334666665 778999999999999999988887766 8999999
Q ss_pred eEEEEEcCCCCeEEEEecC---------CCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 153 AHKLAIEPGSPHVFYTCGE---------DGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
|..+... | ++|++++. |..|++||++..+.+..+..+. ...-+.|+|.-...+++++
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-----------~P~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-----------GPQFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCccccc-----------CchhhhhcccccceEEEEe
Confidence 9876654 5 57888765 4568999999887766665432 2245678887667899999
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEE
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFT 288 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~ 288 (458)
..|...+.|..+... |.. ...........+..+.+++++..++.+. +|.|.+|.
T Consensus 286 ~sGq~q~vd~~~lsN--------P~~---~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSN--------PPA---GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceeeccccccCC--------Ccc---ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999999998543321 100 0112222334599999999999999998 67899997
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.8e-06 Score=74.47 Aligned_cols=219 Identities=14% Similarity=0.149 Sum_probs=132.9
Q ss_pred EEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc-eEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCC
Q 012712 111 KIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGA 184 (458)
Q Consensus 111 ~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 184 (458)
+|++ .+..++.|+.+|.|.+.+- .-.. ...++.+... +..+ +.-++.++|++.+.|+ .+++|+++..+
T Consensus 30 c~~s--~~~~vvigt~~G~V~~Ln~--s~~~-~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSS--STGSVVIGTADGRVVILNS--SFQL-IRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcC--CCceEEEeeccccEEEecc--ccee-eehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4667 8889999999998887763 2111 1225555555 4433 3334446778777664 48999987542
Q ss_pred c---cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc
Q 012712 185 A---TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ 261 (458)
Q Consensus 185 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (458)
. ...+..+............++.+++.+.+ -..+++|-.+|.|..+.-.-.+-.+. .........
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgs-----------r~~~~~~~~ 171 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGS-----------RQDYSHRGK 171 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhcccc-----------ceeeeccCC
Confidence 2 11221111111112124557889999987 68999999999999885432211110 111222346
Q ss_pred cceeEEEeCCCCcE-EEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 262 VGITGLAFSDQSEL-LVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 262 ~~i~~~~~~~~~~~-l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
.+|+++++..+++. +.+.+...|.+|.+... .+....+..|.
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-------------------------------------~p~~~~ld~~G 214 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGR-------------------------------------TPSLKVLDNNG 214 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCC-------------------------------------CcceeeeccCC
Confidence 79999999999876 55566778999998742 11223344443
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee-cCCcee
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVV 388 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v 388 (458)
. ...|..+ ++....+++++ +.-+.+|+.....+-..+. +|....
T Consensus 215 ~--~lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 215 I--SLNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred c--cceeeec-CCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 3 3777777 55444355554 3469999987666666676 665443
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.62 E-value=1.3e-05 Score=66.94 Aligned_cols=275 Identities=14% Similarity=0.111 Sum_probs=146.4
Q ss_pred CcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecC----------CCeEEEEE
Q 012712 20 ALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSD----------DRRVILWD 89 (458)
Q Consensus 20 ~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~i~iwd 89 (458)
+.+.+.|..+++.+.. +. .+-.-.+..+||++.+++++. .-.|.+||
T Consensus 17 ~rv~viD~d~~k~lGm---------------------i~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D 73 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGM---------------------ID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWD 73 (342)
T ss_dssp EEEEEEETTTTEEEEE---------------------EE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ceEEEEECCCCcEEEE---------------------ee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEe
Confidence 3688888887776633 22 122334668999998887532 34789999
Q ss_pred CCCcceeeeeccCC--Cc----ceeEEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCC
Q 012712 90 WKTERVKLSFHSGH--ND----NVFQAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPG 161 (458)
Q Consensus 90 ~~~~~~~~~~~~~~--~~----~i~~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 161 (458)
..+-.....+.-.. .. .....+++. |+++++.... .-.|.|-|+...+.+......+ |...-|.
T Consensus 74 ~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~--dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~ 145 (342)
T PF06433_consen 74 TQTLSPTGEIEIPPKPRAQVVPYKNMFALSA--DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPS 145 (342)
T ss_dssp TTTTEEEEEEEETTS-B--BS--GGGEEE-T--TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEE
T ss_pred cCcCcccceEecCCcchheecccccceEEcc--CCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEec
Confidence 99887666542221 11 223456677 7777766543 4567788887766554433322 2233344
Q ss_pred CCeEEEEecCCCeEEEEeCC-CCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCC
Q 012712 162 SPHVFYTCGEDGLVQHFDLR-TGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDG 240 (458)
Q Consensus 162 ~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (458)
++.-|.+-|.||.+.-..+. .|+...... ...... ....+..-++... +..++--+.+|.|+-.|+......-
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t--~~F~~~---~dp~f~~~~~~~~-~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKST--KVFDPD---DDPLFEHPAYSRD-GGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEE--EESSTT---TS-B-S--EEETT-TTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeec--cccCCC---CcccccccceECC-CCeEEEEecCCEEEEEeccCCcccc
Confidence 44558888999999999887 455432211 111000 1101122233333 3344446788889888887654211
Q ss_pred CccCCCCCCCcCCCcccc-------ccccceeEEEeCCCCcEEEEe-c---CC-------cEEEEEccCCCCCCCCCCCC
Q 012712 241 STDFGQPADYFCPPNLIG-------DEQVGITGLAFSDQSELLVSY-N---DE-------FIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~-~---~~-------~i~i~~~~~~~~~~~~~~~~ 302 (458)
. . +..+.. =..+.-.-+++++....|... . ++ .|.+||+.+
T Consensus 220 ~----~------~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t----------- 278 (342)
T PF06433_consen 220 G----K------PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT----------- 278 (342)
T ss_dssp E----E------EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-----------
T ss_pred c----C------cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-----------
Confidence 0 0 000000 011233456676544333321 1 11 266666665
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCc-EEEEe-cCCCeEEEEEecCCeEEEE
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCE-YVVSG-SDCGRIFIWKKKGGELIRV 380 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~ 380 (458)
++.+..+.... .+.++.. +.+.+ +|++. ..++.+.+||..+|+++++
T Consensus 279 ---------------------------~krv~Ri~l~~---~~~Si~V-sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 279 ---------------------------HKRVARIPLEH---PIDSIAV-SQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp ---------------------------TEEEEEEEEEE---EESEEEE-ESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred ---------------------------CeEEEEEeCCC---ccceEEE-ccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 33344443211 3667887 77766 55443 4579999999999999998
Q ss_pred eec
Q 012712 381 IEA 383 (458)
Q Consensus 381 ~~~ 383 (458)
+..
T Consensus 328 ~~~ 330 (342)
T PF06433_consen 328 IEQ 330 (342)
T ss_dssp E--
T ss_pred hhc
Confidence 874
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.61 E-value=5.6e-08 Score=85.60 Aligned_cols=206 Identities=16% Similarity=0.158 Sum_probs=133.2
Q ss_pred CCceEEEEEecC--CCEEEEecCCCeEEEEECCCccee-eeeccCCCcceeEEEEccCCCCeEEEEEcC----CCcEEEe
Q 012712 61 RGCVNTVSFNTD--GDILISGSDDRRVILWDWKTERVK-LSFHSGHNDNVFQAKIMPFTDDRSIVTCAA----DGQVRHA 133 (458)
Q Consensus 61 ~~~v~~~~~s~~--~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~----dg~i~vw 133 (458)
...+.|+++.-+ ...++.|..+|.|-+-.+....-. ..+..+|....++++|.+. |.+.||.|-. |..+.+|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccc-cHHHHHhhhhhhcccCCccce
Confidence 345677776543 457889999999999887654433 4455788889999999984 6677777643 5679999
Q ss_pred ecccc--cceeeeeccc-cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeecccCCCCcceeecceEEE
Q 012712 134 QILER--GGVETKLLGK-HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 134 ~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
|+.+. .+.....+.+ ......+++|..+. .++++|.....+.++|++.... ...+ ....+..+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~sv------------nTk~vqG~ 201 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSSV------------NTKYVQGI 201 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhhh------------hhhhcccc
Confidence 99876 2222211222 33456688888776 6888888888999999985432 2222 22245677
Q ss_pred EECCCCCcEEEEecCCCeEEEEe-cCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEecCC--cEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYNDE--FIY 285 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~--~i~ 285 (458)
..+|-.++++++-. ||.|.+|| .+.-+. |+.. ...-.......+..++|.|... ++++.+.+ .|+
T Consensus 202 tVdp~~~nY~cs~~-dg~iAiwD~~rnien--------pl~~--i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIr 270 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNS-DGDIAIWDTYRNIEN--------PLQI--ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIR 270 (783)
T ss_pred eecCCCCCceeccc-cCceeeccchhhhcc--------HHHH--HhhCCCCcccceeeEEeccCCcchhhhhccCcceEE
Confidence 77885467887655 99999999 333221 1000 0000111123588999999643 55555544 689
Q ss_pred EEEccC
Q 012712 286 LFTQDM 291 (458)
Q Consensus 286 i~~~~~ 291 (458)
+|++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 998865
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.4e-06 Score=72.13 Aligned_cols=190 Identities=18% Similarity=0.123 Sum_probs=113.9
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCC---CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGED---GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
+..-...+..-+|+|++..+.+..-.. ..+.++|+.+++....... ...-..-+|+||+..++++.
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----------~g~~~~P~fspDG~~l~f~~ 256 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----------NGNNGAPAFSPDGSKLAFSS 256 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----------CCccCCccCCCCCCEEEEEE
Confidence 333445566778999986544432222 3599999999887666652 22335668999977777777
Q ss_pred cCCCe--EEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----cEEEEEccCCCCCC
Q 012712 223 GSDEY--TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----FIYLFTQDMGLGPN 296 (458)
Q Consensus 223 ~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~i~i~~~~~~~~~~ 296 (458)
..||. |+++|+....... .....+.-..-.|+|||+.++..++. .|++++.+....
T Consensus 257 ~rdg~~~iy~~dl~~~~~~~----------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-- 318 (425)
T COG0823 257 SRDGSPDIYLMDLDGKNLPR----------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-- 318 (425)
T ss_pred CCCCCccEEEEcCCCCccee----------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--
Confidence 77776 5556666654211 11122333366899999999988743 377777765321
Q ss_pred CCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCe--EEEEEec
Q 012712 297 PPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGR--IFIWKKK 373 (458)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~--i~iwd~~ 373 (458)
..+....... ..-.+ +|||++++..+. +|. |.+.|+.
T Consensus 319 -------------------------------------~riT~~~~~~--~~p~~-SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 319 -------------------------------------TRLTFSGGGN--SNPVW-SPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -------------------------------------eEeeccCCCC--cCccC-CCCCCEEEEEeccCCceeeEEeccC
Confidence 1121111110 12334 999999987664 344 6666766
Q ss_pred CCeEEEEeecCCceeeEEEecCCCCeEEEeec
Q 012712 374 GGELIRVIEADRHVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 405 (458)
++..++.+. +......-.|.|+++.+...+.
T Consensus 359 ~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 359 SGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 665444443 3333456678888887765543
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.56 E-value=8.7e-06 Score=73.76 Aligned_cols=101 Identities=8% Similarity=0.108 Sum_probs=73.1
Q ss_pred cCCCcEEEEecCCCeEEEEEecC-----CeEEEEeecCCceeeEEEecCCCCeEEEee-cCCcEEEecCCcccc------
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKG-----GELIRVIEADRHVVNCIEPHPHSTVLASSG-IESDIKILTPNAADR------ 419 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~------ 419 (458)
.++|++...+ +++|.+.|..+ .+.+..+. -......+.++|||+++++++ .+.++.|.|+...+.
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 6688877763 67899999987 34555554 334578899999999877655 489999999987542
Q ss_pred ------cccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 420 ------ATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 420 ------~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.....-...-...+|.++|....|--.|..|..|++
T Consensus 362 ~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 362 KPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 111111223456789999987778888999999985
No 338
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.56 E-value=4.8e-05 Score=67.02 Aligned_cols=279 Identities=14% Similarity=0.111 Sum_probs=137.4
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc---c
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER---G 139 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~---~ 139 (458)
.|+.+.|+++..-|+.|...|.|.||.+...+.-.. .-..+-..+.+.++. ..++.-.+-|+... .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFS--------LNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccc--------ccCCCcceEEehhhCCcc
Confidence 488999999988999999999999998765443210 011111222222210 01111222333221 1
Q ss_pred ----ceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC--
Q 012712 140 ----GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP-- 213 (458)
Q Consensus 140 ----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-- 213 (458)
......+....++|++++.+.-| +++.|..+|.+.+.|+|.+..+..-.... ..........++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~--~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRE--SFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEEEEEEE
T ss_pred cccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccc--cccccccccCeeEEEEEEEe
Confidence 12222344557899999998777 67889999999999999887665533332 011111334567777751
Q ss_pred --CCC---cEEEEecCCCeEEEEecCC-CccCCCccCCCCCCCcCCCccccccccceeEEE-eCCC--------------
Q 012712 214 --RNA---NLFAVAGSDEYTRLYDIRK-YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA-FSDQ-------------- 272 (458)
Q Consensus 214 --~~~---~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~-------------- 272 (458)
+++ -.+++|+..|.+.+|.+.- ..-.....+ ......+..+|..+. ++.+
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~---------~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQF---------AGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEE---------EEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEE---------eeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 112 4788899999999998752 110000000 000111223333332 2111
Q ss_pred -------CcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeee
Q 012712 273 -------SELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTV 345 (458)
Q Consensus 273 -------~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 345 (458)
..+++.+++..++++...+.+. ..+.+..+. ..
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~-------------------------------------~~K~~~~~~---~~ 258 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKG-------------------------------------AHKSFDDPF---LC 258 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---E-------------------------------------EEEE-SS-E---EE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcc-------------------------------------cceeecccc---cc
Confidence 1266777777888888765311 112221111 12
Q ss_pred eEEEEe----cCCCcEEEEecCCCeEEEEEecCCeEEEEeecCC----ceeeEEEecCCCCeEEEeec
Q 012712 346 KGVNFF----GPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADR----HVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 346 ~~~~~~----s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~s~~~ 405 (458)
..+.+. ...+..|++-..+|.+++|.+..-+.+..++-.. ..+....++++|..++-.+.
T Consensus 259 ~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 259 SSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp EEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred ceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 233331 2356678888899999999999988888776532 34567788999997766543
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.1e-05 Score=71.35 Aligned_cols=198 Identities=14% Similarity=0.223 Sum_probs=127.7
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcc-eeEEEEccCCCCeEEEEEcCCCc-----EEEeecc
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDN-VFQAKIMPFTDDRSIVTCAADGQ-----VRHAQIL 136 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~l~s~~~dg~-----i~vw~~~ 136 (458)
.|+| |++.+..++.|+.+|.|.+.+- .......+ ..+... |..+.... +.++|++.+.|+. +++|+++
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEeccc
Confidence 4444 6778889999999998887763 23333445 455555 44444433 4478888877654 8999986
Q ss_pred cccc------eeeeecc-----ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCC---CCCccceeeecccCCCCccee
Q 012712 137 ERGG------VETKLLG-----KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLR---TGAATELFTCRPIDDRRNYMT 202 (458)
Q Consensus 137 ~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~ 202 (458)
.-+. .....+. ....++.+++.+.+- ..+++|-.+|.|..+.=. .......+ .|..
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~---------~~~~ 170 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDY---------SHRG 170 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceee---------eccC
Confidence 5321 1011111 235678899999887 788999999999888421 11111111 1225
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE 282 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 282 (458)
..+|+.+++..++...+++++ ...|.+|.+.... ........+.....|-.+++....+++++..
T Consensus 171 ~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~--------------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 171 KEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT--------------PSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred CCCceeeEEecCCceeEEEEe-cceeEEEEecCCC--------------cceeeeccCCccceeeecCCCCccEEEecCc
Confidence 668999999987444334333 3469999987432 0123355567788999998877768888888
Q ss_pred cEEEEEccC
Q 012712 283 FIYLFTQDM 291 (458)
Q Consensus 283 ~i~i~~~~~ 291 (458)
.+.+|+...
T Consensus 236 ~l~fY~sd~ 244 (933)
T KOG2114|consen 236 FLYFYDSDG 244 (933)
T ss_pred eEEEEcCCC
Confidence 899999765
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=6.9e-06 Score=75.34 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCeEEEEec----CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712 153 AHKLAIEPGSPHVFYTCG----EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (458)
Q Consensus 153 v~~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (458)
-+-..|+|..| +|+.++ ..|.|.|| .++|++..... .+..+.+++|+|. .-.|+.|-.-|.+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIf-adtGEPqr~Vt-----------~P~hatSLCWHpe-~~vLa~gwe~g~~ 83 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIF-ADTGEPQRDVT-----------YPVHATSLCWHPE-EFVLAQGWEMGVS 83 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEE-ecCCCCCcccc-----------cceehhhhccChH-HHHHhhcccccee
Confidence 34467899885 566554 35788888 35666544333 2234678999997 6788888899999
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccC
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDM 291 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~ 291 (458)
.+|...+.+. ......|..+|..+.|||+|..++++. -+.+.+|....
T Consensus 84 ~v~~~~~~e~---------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 84 DVQKTNTTET---------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEEecCCcee---------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 9999887652 345556889999999999999999988 45789998774
No 341
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00012 Score=66.07 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=90.1
Q ss_pred CCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 60 HRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 60 h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
|...|.--+++..+++++.|+.-|.+.+|+-..++....-..+..+.+.....++ +..++|.|+..|.|.++.+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEEeehhhccC
Confidence 4455555566777899999999999999997776654433233445566677787 78888889999999999887643
Q ss_pred ceee----eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712 140 GVET----KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 140 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (458)
.... ..-..|...|++++|++++ ..+++|...|.|..-.+..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 3211 1123477899999999999 6799999999999888877
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=0.00042 Score=63.99 Aligned_cols=312 Identities=11% Similarity=0.063 Sum_probs=160.7
Q ss_pred CCEEEEecCCCeEEEEECCCcceeeeeccCCC-----ccee--EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee
Q 012712 73 GDILISGSDDRRVILWDWKTERVKLSFHSGHN-----DNVF--QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL 145 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~i~--~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~ 145 (458)
+..+..++.++.|.-.|..+++.+.++..... ..+. .+... ++..++.++.+|.|.-+|.++++.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 44566777789999999999988776632211 0010 11111 32678888889999999999998876644
Q ss_pred ccccc---cce-EEEEEcCCCCeEEEEec---------CCCeEEEEeCCCCCccceeeecccCC--CCcce--------e
Q 012712 146 LGKHQ---GRA-HKLAIEPGSPHVFYTCG---------EDGLVQHFDLRTGAATELFTCRPIDD--RRNYM--------T 202 (458)
Q Consensus 146 ~~~~~---~~v-~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~--------~ 202 (458)
...+. ..+ ....+.. + +++.++ .++.+..+|..+++....+....... .+... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~-~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVK-K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG 214 (488)
T ss_pred CCCCcCcceEecCCCEEEC-C--EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence 43321 001 1111221 2 344443 46889999999999877665421100 00000 0
Q ss_pred ecce-EEEEECCCCCcEEEEecCCC------------------eEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 203 VVNL-NAIAIDPRNANLFAVAGSDE------------------YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 203 ~~~v-~~~~~~p~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
...+ ...++.+. +..++.++.++ .|.-+|..+++..-..+...+... .......+
T Consensus 215 g~~vw~~pa~d~~-~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~-----~~~~~s~p 288 (488)
T cd00216 215 GGTSWASPTYDPK-TNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW-----DYDGPNQP 288 (488)
T ss_pred CCCccCCeeEeCC-CCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc-----ccccCCCC
Confidence 0001 13445554 35677776555 688889988875443222111000 00000000
Q ss_pred -eeEEEeCCCCc---EEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 264 -ITGLAFSDQSE---LLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 264 -i~~~~~~~~~~---~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
+..+. .-+|. .++.++ ++.++.+|..+++........
T Consensus 289 ~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------------------------------- 330 (488)
T cd00216 289 SLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------------------------------- 330 (488)
T ss_pred eEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------------------------------------
Confidence 11110 11232 344444 667999999887655442210
Q ss_pred ccceeeeeEEEEecCC----------------CcEEEEecCCCeEEEEEecCCeEEEEeecCC--------cee--eEEE
Q 012712 339 HRNCVTVKGVNFFGPK----------------CEYVVSGSDCGRIFIWKKKGGELIRVIEADR--------HVV--NCIE 392 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~----------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~v--~~~~ 392 (458)
...++. +|+ ...+.....+|.+.-.|+.+|+.+-+..... .+. ..++
T Consensus 331 ------~~~~~~-~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~ 403 (488)
T cd00216 331 ------EQPMAY-DPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA 403 (488)
T ss_pred ------cccccc-CCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence 000011 110 0011112245677777777777665543220 111 1122
Q ss_pred ecCCCCeEEEeecCCcEEEecCCcccccccccccccEEE--EEEecCC-cEEEe
Q 012712 393 PHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCF--SIYSADY-WWSKS 443 (458)
Q Consensus 393 ~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~--~~~s~d~-~~l~s 443 (458)
..+..|+.++.||.|+.+|..+++.+-...-.+.+.+ +.+..+| .|+++
T Consensus 404 --~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~ 455 (488)
T cd00216 404 --TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGV 455 (488)
T ss_pred --ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEE
Confidence 2457788889999999999999987633333333322 3345566 44444
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.48 E-value=4.2e-05 Score=68.10 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=103.7
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc---CC-CcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA---AD-GQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~---~d-g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
.+.+=|.+ +.....+ ..-...+..-+|+| ++..++... .. ..+.++++.+++......+.++ -..-+|+
T Consensus 174 ~l~~~D~d-g~~~~~l-~~~~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fs 246 (425)
T COG0823 174 ELALGDYD-GYNQQKL-TDSGSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFS 246 (425)
T ss_pred eEEEEccC-CcceeEe-cccCcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCC
Confidence 33444433 3333333 33445677788999 888776543 22 3588999988876655333333 3457899
Q ss_pred CCCCeEEEEecCCCe--EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE--ecCC
Q 012712 160 PGSPHVFYTCGEDGL--VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY--DIRK 235 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~--d~~~ 235 (458)
|+|++++++...||. |.+.|+..+...+ +.. ..+.-..-.|+||+..++++.+..|.-.|| +...
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~----------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN----------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee-ccc----------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 999888888888886 5566777766333 211 111122567999976666777777765444 5444
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCc--EEEEEccC
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEF--IYLFTQDM 291 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~--i~i~~~~~ 291 (458)
.... .+. .....-..-.|+|||++|+..+ ++. |.+.++.+
T Consensus 316 ~~~~---------------riT-~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 316 SQVT---------------RLT-FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred Ccee---------------Eee-ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 3310 011 1111122677999999998776 343 66666554
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.47 E-value=5e-05 Score=66.89 Aligned_cols=266 Identities=13% Similarity=0.090 Sum_probs=138.5
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEcccccccc-c--------cccc------------cc-cccccceEEeeeeeEeecC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLST-R--------NFAL------------RR-RASEDLVLRLGIYAKLDKH 60 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~-~--------~~~~------------~~-~~~~~~~~~~~~~~~~~~h 60 (458)
.+++.+...-|++|...|.|-||.....+.-. + .+.+ +- .........+.+...++..
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~ 85 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK 85 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence 45677888889999999999999988654443 1 0000 00 0111112335666667777
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec-------cCCCcceeEEEEccC---CCC---eEEEEEcCC
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-------SGHNDNVFQAKIMPF---TDD---RSIVTCAAD 127 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~i~~~~~~~~---~~~---~~l~s~~~d 127 (458)
.++|++++.|.- -++|.|..+|.+.|.|++....+..-. ......++++.|+.. .|+ -.+++|...
T Consensus 86 ~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 999999999854 499999999999999998766554421 123446888888731 133 467888889
Q ss_pred CcEEEeeccc-ccceee---e-eccccccceEEEE-EcCCC--------------------CeEEEEecCCCeEEEEeCC
Q 012712 128 GQVRHAQILE-RGGVET---K-LLGKHQGRAHKLA-IEPGS--------------------PHVFYTCGEDGLVQHFDLR 181 (458)
Q Consensus 128 g~i~vw~~~~-~~~~~~---~-~~~~~~~~v~~~~-~~~~~--------------------~~~l~s~~~dg~i~iwd~~ 181 (458)
|.+.+|.+.- ...... . ....+.+++..+. ++.+. +.+++. ..+..++++...
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv-vSe~~irv~~~~ 243 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV-VSESDIRVFKPP 243 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE-E-SSEEEEE-TT
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE-EcccceEEEeCC
Confidence 9999998852 211111 0 1123445555544 32110 123333 345679999887
Q ss_pred CCCccceeeecccCCCCcceeecceEEEEEC----CCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccc
Q 012712 182 TGAATELFTCRPIDDRRNYMTVVNLNAIAID----PRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLI 257 (458)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (458)
+.+....... .......+.+- ..++..|++-..+|.+++|.+...+......+. .
T Consensus 244 ~~k~~~K~~~----------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~-----------~ 302 (395)
T PF08596_consen 244 KSKGAHKSFD----------DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP-----------P 302 (395)
T ss_dssp ---EEEEE-S----------S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S-----------S
T ss_pred CCcccceeec----------cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC-----------C
Confidence 7665333221 11122233332 113567888889999999999887755443221 1
Q ss_pred cccccceeEEEeCCCCcEEEEecCCcEEEEEccC
Q 012712 258 GDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
......+....++++|..++-.+...+.++.+-.
T Consensus 303 ~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 303 PLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp ---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred ccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 1122345567789999988877766655555443
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.40 E-value=0.00065 Score=57.87 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=88.1
Q ss_pred cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeee-----
Q 012712 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKL----- 145 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~----- 145 (458)
..++.|+.|..+| +.+++.......... .+...|..+...| +-+.|+.-+ |+.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 3578899998888 899998333333333 2334499999998 777766665 4999999987654433110
Q ss_pred -------ccccccceEEEE--EcCCCCeEEEEecCCCeEEEEeCCCC-----CccceeeecccCCCCcceeecceEEEEE
Q 012712 146 -------LGKHQGRAHKLA--IEPGSPHVFYTCGEDGLVQHFDLRTG-----AATELFTCRPIDDRRNYMTVVNLNAIAI 211 (458)
Q Consensus 146 -------~~~~~~~v~~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 211 (458)
.......+...+ -...+... ++......|.+|..... +..+.+. -...+.+++|
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~-L~va~kk~i~i~~~~~~~~~f~~~~ke~~-----------lp~~~~~i~~ 146 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRR-LCVAVKKKILIYEWNDPRNSFSKLLKEIS-----------LPDPPSSIAF 146 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceE-EEEEECCEEEEEEEECCcccccceeEEEE-----------cCCCcEEEEE
Confidence 011223344444 11233233 44444558888887664 2223333 2346889999
Q ss_pred CCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 212 DPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 212 ~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
.+ +.++.|..++ ..+.|+.++..
T Consensus 147 ~~---~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 147 LG---NKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred eC---CEEEEEeCCc-eEEEecCCCCc
Confidence 84 3677776554 78889986653
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.38 E-value=0.00074 Score=60.21 Aligned_cols=88 Identities=11% Similarity=0.009 Sum_probs=67.5
Q ss_pred EEEEecCCeEE--EEe-ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEee
Q 012712 368 FIWKKKGGELI--RVI-EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQ 444 (458)
Q Consensus 368 ~iwd~~~~~~~--~~~-~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 444 (458)
.+|+....+.. ... -.....|.+++++|+...|+.|+.||.|.+||...+..... ...-..+.++|+|+|..++.|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEE
Confidence 46666544322 111 13567899999999999999999999999999877633322 333457889999999999999
Q ss_pred ecCCceEEEEEe
Q 012712 445 NFSCSILLFEWL 456 (458)
Q Consensus 445 ~~d~~i~~w~~~ 456 (458)
+.-|.+.+||.-
T Consensus 318 s~qGelQ~FD~A 329 (545)
T PF11768_consen 318 SEQGELQCFDMA 329 (545)
T ss_pred cCCceEEEEEee
Confidence 999999999963
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=3.8e-07 Score=80.56 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=127.7
Q ss_pred CCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec-CCCEEEEec---
Q 012712 5 SNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT-DGDILISGS--- 80 (458)
Q Consensus 5 ~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~--- 80 (458)
+|..+...++.|..+|.|-+-.+....--. .....+|....++++|++ |.+.||.|-
T Consensus 65 ~y~~d~cIlavG~atG~I~l~s~r~~hdSs-------------------~E~tp~~ar~Ct~lAwneLDtn~LAagldkh 125 (783)
T KOG1008|consen 65 FYGNDRCILAVGSATGNISLLSVRHPHDSS-------------------AEVTPGYARPCTSLAWNELDTNHLAAGLDKH 125 (783)
T ss_pred hcCCchhhhhhccccCceEEeecCCccccc-------------------ceecccccccccccccccccHHHHHhhhhhh
Confidence 455556678888888888877665221110 112457889999999998 557777763
Q ss_pred -CCCeEEEEECCCc--ce--eeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEE
Q 012712 81 -DDRRVILWDWKTE--RV--KLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHK 155 (458)
Q Consensus 81 -~d~~i~iwd~~~~--~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~ 155 (458)
.|..+.|||+.++ .+ ...+..+......+++|.. +.+++.+|.....+.++|++...... ..-.+..+..
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~---~svnTk~vqG 200 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSV---SSVNTKYVQG 200 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhh---hhhhhhhccc
Confidence 3568999999876 22 1222122344566889987 88999999998899999987432211 1112345666
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeC-CCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC-CeEEEEe
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDL-RTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD-EYTRLYD 232 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~i~d 232 (458)
+...|-.+.++++ ..||.|.+||. +.-+ +...+...+.. ....+..++|.|.....+++...| ++|++||
T Consensus 201 ~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~------~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 201 ITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENK------KPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCC------cccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 7788844456554 45999999993 3222 22222111110 112578999999855566666644 6899999
Q ss_pred cCCCc
Q 012712 233 IRKYK 237 (458)
Q Consensus 233 ~~~~~ 237 (458)
+....
T Consensus 274 i~~v~ 278 (783)
T KOG1008|consen 274 ICVVG 278 (783)
T ss_pred ccccC
Confidence 87543
No 348
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.37 E-value=0.0012 Score=56.76 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=125.8
Q ss_pred EEecCCCEEEEecC-C--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee
Q 012712 68 SFNTDGDILISGSD-D--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK 144 (458)
Q Consensus 68 ~~s~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~ 144 (458)
+|.+||+.|+-++. | ..+.+-|+.+++..+-. .+..........+| +++.++-......++-.|+.+.+.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~--~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSP--DDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-T--TSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEec--CCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 46788976665544 4 46777788888875544 22223344567778 7777766555567888888887654432
Q ss_pred eccccccceEEEEE--cCCCCeEEEEec----------------------CCCeEEEEeCCCCCccceeeecccCCCCcc
Q 012712 145 LLGKHQGRAHKLAI--EPGSPHVFYTCG----------------------EDGLVQHFDLRTGAATELFTCRPIDDRRNY 200 (458)
Q Consensus 145 ~~~~~~~~v~~~~~--~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 200 (458)
.+ ....+-...| +.++ ..++-.- -...|...|+.+++....+.
T Consensus 119 ~~--p~~~~g~gt~v~n~d~-t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---------- 185 (386)
T PF14583_consen 119 EV--PDDWKGYGTWVANSDC-TKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---------- 185 (386)
T ss_dssp E----TTEEEEEEEEE-TTS-SEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE----------
T ss_pred EC--CcccccccceeeCCCc-cEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe----------
Confidence 23 3333333344 3444 3332211 11346666777777655554
Q ss_pred eeecceEEEEECCCCCcEEEEecCC---C-eEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSD---E-YTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~d---g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (458)
....+.-+.|+|.++.+|+-|-+. . .-|+|-+++...... + .. .......+..=-|.|||..|
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~-----~------v~-~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK-----K------VH-RRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E-----E------SS----TTEEEEEEEE-TTSS-E
T ss_pred -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce-----e------ee-cCCCCcccccccccCCCCEE
Confidence 444678889999877777776432 2 125565543321100 0 00 00112334445688999866
Q ss_pred EEec---CC---cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 277 VSYN---DE---FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 277 ~~~~---~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
..-+ .+ .|.-+|..++. . ..+.... ....+..
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~--------------------------------------~-~~~~~~p---~~~H~~s 290 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGE--------------------------------------R-RRLMEMP---WCSHFMS 290 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT----------------------------------------E-EEEEEE----SEEEEEE
T ss_pred EEEeecCCCCceEEEeeCCCCCC--------------------------------------c-eEEEeCC---ceeeeEE
Confidence 5422 12 25555555421 0 1111111 1122333
Q ss_pred ecCCCcEEEEecCC----------------CeEEEEEecCCeEEEE---------eecCCc-eeeEEEecCCCCeEE-Ee
Q 012712 351 FGPKCEYVVSGSDC----------------GRIFIWKKKGGELIRV---------IEADRH-VVNCIEPHPHSTVLA-SS 403 (458)
Q Consensus 351 ~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~---------~~~~~~-~v~~~~~s~~~~~l~-s~ 403 (458)
++||++++-=+.| --|++++++.++.... +.++.. .=....|+|||++++ ++
T Consensus 291 -s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~S 369 (386)
T PF14583_consen 291 -SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRS 369 (386)
T ss_dssp --TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE
T ss_pred -cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEEC
Confidence 7898888742222 1566788876654321 111111 124578999999765 45
Q ss_pred ecCCcEEEecC
Q 012712 404 GIESDIKILTP 414 (458)
Q Consensus 404 ~~d~~i~iw~~ 414 (458)
...|...||-+
T Consensus 370 d~~G~~~vY~v 380 (386)
T PF14583_consen 370 DMEGPPAVYLV 380 (386)
T ss_dssp -TTSS-EEEEE
T ss_pred CCCCCccEEEE
Confidence 56777777644
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.36 E-value=0.00031 Score=62.88 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=117.0
Q ss_pred cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeE
Q 012712 149 HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYT 228 (458)
Q Consensus 149 ~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 228 (458)
.......+.++|+++ .++. +.||...++........ ..+....++|.+. +.+|+-..++.|
T Consensus 31 ~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r~k---------------~~G~g~~~vw~~~--n~yAv~~~~~~I 91 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWRNK---------------AFGSGLSFVWSSR--NRYAVLESSSTI 91 (443)
T ss_dssp -SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTEEE---------------EEEE-SEEEE-TS--SEEEEE-TTS-E
T ss_pred CCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCccc---------------ccCceeEEEEecC--ccEEEEECCCeE
Confidence 444578899999994 4444 55788888873322211 2224567889984 457777778889
Q ss_pred EEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCcccccc
Q 012712 229 RLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSE 308 (458)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~ 308 (458)
.++.--+.+.... +.. ...+..+-. |.+|...+++.|.+||..++
T Consensus 92 ~I~kn~~~~~~k~--------------i~~--~~~~~~If~---G~LL~~~~~~~i~~yDw~~~---------------- 136 (443)
T PF04053_consen 92 KIYKNFKNEVVKS--------------IKL--PFSVEKIFG---GNLLGVKSSDFICFYDWETG---------------- 136 (443)
T ss_dssp EEEETTEE-TT---------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT-----------------
T ss_pred EEEEcCccccceE--------------EcC--CcccceEEc---CcEEEEECCCCEEEEEhhHc----------------
Confidence 9963222221111 110 112333332 88888888889999999873
Q ss_pred ccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC-----------eE
Q 012712 309 ASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG-----------EL 377 (458)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~ 377 (458)
..++.+... .|..+.| +++|.+++..+.+ .+++++.+.. ..
T Consensus 137 ----------------------~~i~~i~v~----~vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~ 188 (443)
T PF04053_consen 137 ----------------------KLIRRIDVS----AVKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDA 188 (443)
T ss_dssp -----------------------EEEEESS-----E-EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGG
T ss_pred ----------------------ceeeEEecC----CCcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhc
Confidence 344444422 2678888 9999999988755 6777765322 02
Q ss_pred EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 378 IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
...+..-...|.+.+|..| .++-.... .|+- +-+|+...+..-..++.=+.+.|....+.....|+.|..+..
T Consensus 189 f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 189 FELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp EEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 3333322457889999766 44433333 6666 455555544444556777778887777777788888877654
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.33 E-value=0.00046 Score=61.85 Aligned_cols=231 Identities=13% Similarity=0.148 Sum_probs=115.7
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
.-....+.++| +++.++.++ +|...++.....+.. ..+.....+|.+.+ .+++-...+.|.++.--..
T Consensus 32 ~~~p~~ls~np--ngr~v~V~g-~geY~iyt~~~~r~k-------~~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 32 EIYPQSLSHNP--NGRFVLVCG-DGEYEIYTALAWRNK-------AFGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp SS--SEEEE-T--TSSEEEEEE-TTEEEEEETTTTEEE-------EEEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE
T ss_pred CcCCeeEEECC--CCCEEEEEc-CCEEEEEEccCCccc-------ccCceeEEEEecCc--cEEEEECCCeEEEEEcCcc
Confidence 34578999999 999988855 677778773222211 22455678899855 3676666888999632222
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
+....+.. ...+..+-. |.+|...+.+ .|.+||..+++...... -.+
T Consensus 100 ~~~k~i~~-----------~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~-----------------v~~ 146 (443)
T PF04053_consen 100 EVVKSIKL-----------PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID-----------------VSA 146 (443)
T ss_dssp -TT----------------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES-----------------S-E
T ss_pred ccceEEcC-----------CcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe-----------------cCC
Confidence 22223321 112333332 4566665544 89999999887543311 124
Q ss_pred eeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCccccc--CceeecCccc
Q 012712 264 ITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRI--APQVYKGHRN 341 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 341 (458)
|..+.|+++|++++..+++.+++++.+...... ....+. ....+ |+-
T Consensus 147 vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~-----------------------------~~~~g~e~~f~~~--~E~ 195 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKDSIYILKYNLEAVAA-----------------------------IPEEGVEDAFELI--HEI 195 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH-----------------------------BTTTB-GGGEEEE--EEE
T ss_pred CcEEEEECCCCEEEEEeCCeEEEEEecchhccc-----------------------------ccccCchhceEEE--EEe
Confidence 799999999999999999998888755310000 000000 11112 221
Q ss_pred eeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 342 CVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 342 ~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
...|.+.+| ..+ .++..+.. .++. +-.|+. .++..-..++.=+...|..+.+.....|+.+..+.+...
T Consensus 196 ~~~IkSg~W-~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 196 SERIKSGCW-VED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -S--SEEEE-ETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred cceeEEEEE-EcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 224888888 444 44434334 6665 334432 233323456777778887788888889999998877643
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.32 E-value=0.00049 Score=56.22 Aligned_cols=222 Identities=12% Similarity=0.115 Sum_probs=112.2
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
+.+.+-...+..++|+|+...++++....+.|..++.+ ++.+..+.... ....-.+++..+ +.++++--
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---------~~D~EgI~y~g~-~~~vl~~E 83 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---------FGDYEGITYLGN-GRYVLSEE 83 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-ST-TEEEEEET
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---------CCCceeEEEECC-CEEEEEEc
Confidence 34666667799999999876888888888999888864 67766665432 224677888765 56666666
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEEccCCCCCCCCCCCC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~~~~~~~~~~~~~~~ 302 (458)
.++.+.++++......-... ....+ .......++..+..++|+|.+..|..+.+. -..+|.+........+.
T Consensus 84 r~~~L~~~~~~~~~~~~~~~---~~~~~-~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~--- 156 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRA---DVQKI-SLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF--- 156 (248)
T ss_dssp TTTEEEEEEE----TT--EE---EEEEE-E---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E---
T ss_pred CCCcEEEEEEeccccccchh---hceEE-ecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee---
Confidence 68999999985432110000 00000 001112345678999999986655555543 45666655411000000
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecC-CCcEEEEecCCCeEEEEEecCCeEEEEe
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGP-KCEYVVSGSDCGRIFIWKKKGGELIRVI 381 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 381 (458)
. . ............. .+.++++ +| .+++++....+..|..+| .+|+++..+
T Consensus 157 --~--~--------------------~~~~~~~~~~~~~--d~S~l~~-~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 157 --V--S--------------------DDQDLDDDKLFVR--DLSGLSY-DPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp --E--E--------------------E-HHHH-HT--SS-----EEEE-ETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred --e--c--------------------cccccccccceec--cccceEE-cCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 0 0 0000000000111 2567777 55 456777777888999999 578877665
Q ss_pred ecCC---------ceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 382 EADR---------HVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 382 ~~~~---------~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
.-.. ...-.|+|.++|++.++ ++-+..+++
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 4222 24678999999976654 455555443
No 352
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.30 E-value=0.00041 Score=55.84 Aligned_cols=204 Identities=17% Similarity=0.203 Sum_probs=117.4
Q ss_pred eEeecCCCceEEEEEecCCCEEEEecCC-----CeEEEEECCCcc-eeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-
Q 012712 55 AKLDKHRGCVNTVSFNTDGDILISGSDD-----RRVILWDWKTER-VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD- 127 (458)
Q Consensus 55 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d- 127 (458)
+.+.||. .|||||.+|...-.| |.|-|||...+- .+.++ ..|.-.-..+.+.+ ||+.++.+...
T Consensus 113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~--DGrtlvvanGGI 183 (366)
T COG3490 113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMA--DGRTLVVANGGI 183 (366)
T ss_pred ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEec--CCcEEEEeCCce
Confidence 4455664 499999999875443 789999987543 23344 66777788899999 99999887531
Q ss_pred -----------------CcEEEeecccccceeeeecc--ccccceEEEEEcCCCCeEEEEecCCCe-----EEEEeCCCC
Q 012712 128 -----------------GQVRHAQILERGGVETKLLG--KHQGRAHKLAIEPGSPHVFYTCGEDGL-----VQHFDLRTG 183 (458)
Q Consensus 128 -----------------g~i~vw~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~ 183 (458)
-.+.+.|..+++.+.+..+. .+...+..++..++| .+++.+-..|. -.+=-...+
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g 262 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKG 262 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCC
Confidence 12334444455544444444 455678888888888 44444433221 111112233
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
+..+.+...+.... .....+-+++.+.+.+...++.-..+...+||..++.......+ ..
T Consensus 263 ~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l-----------------~d 322 (366)
T COG3490 263 EPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL-----------------PD 322 (366)
T ss_pred CcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc-----------------cc
Confidence 33333332211100 02235678888876555555555666788999999875433111 11
Q ss_pred eeEEEeCCCCcEEEEecCCcEEEEEc
Q 012712 264 ITGLAFSDQSELLVSYNDEFIYLFTQ 289 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~~i~i~~~ 289 (458)
...++-.. +-+.++...+.+.++.-
T Consensus 323 aaGva~~~-~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 323 AAGVAAAK-GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cccceecc-CceEEecCCceEEeccc
Confidence 22233222 34667777788887743
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.0029 Score=56.41 Aligned_cols=284 Identities=12% Similarity=0.115 Sum_probs=166.9
Q ss_pred EEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeecccccceeeeeccccccceEEEEEcCCCC
Q 012712 85 VILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP 163 (458)
Q Consensus 85 i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 163 (458)
+.+++..+......+ ..+ .....+...| ++..+.... ....+...+.. ...... ....-......++.++.+.
T Consensus 13 ~~v~~~~~~~~~~~~-~~~-~~~~~v~~~~--~g~~~~v~~~~~~~~~~~~~~-~n~~~~-~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAI-SLG-RGPGGVAVNP--DGTQVYVANSGSNDVSVIDAT-SNTVTQ-SLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEe-ecC-CCCceeEEcC--ccCEEEEEeecCceeeecccc-cceeee-eccCCCccccceeeCCCCC
Confidence 666666555544444 112 2556677777 764443333 22245555443 111111 1111113445788899887
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEec--CCCeEEEEecCCCccCCC
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAG--SDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~i~d~~~~~~~~~ 241 (458)
+.++....+..|.+.|..+.+........ .....++++|+++...++-. .++.+.+.|..+.+....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 77777777899999997777666555432 14578999998544444444 368899999888765332
Q ss_pred ccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec--CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccc
Q 012712 242 TDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN--DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSA 319 (458)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (458)
...+ ..+ ..++++|+|..+.... ++.+.+.|.........
T Consensus 156 --------------~~vG-~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~---------------------- 197 (381)
T COG3391 156 --------------IPVG-NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRG---------------------- 197 (381)
T ss_pred --------------EecC-CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecc----------------------
Confidence 1111 123 8899999999666655 55799999665322110
Q ss_pred cCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCC---CeEEEEEecCCeEEEEeecCCc-eeeEEEecC
Q 012712 320 ASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDC---GRIFIWKKKGGELIRVIEADRH-VVNCIEPHP 395 (458)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~ 395 (458)
........... -..+.+ +|+|++++..... +.+...|..++........-.. ....+..+|
T Consensus 198 -----------~~~~~~~~~~~---P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p 262 (381)
T COG3391 198 -----------SVGSLVGVGTG---PAGIAV-DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP 262 (381)
T ss_pred -----------ccccccccCCC---CceEEE-CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC
Confidence 00001111111 234555 9999977665443 5899999988877765221111 466789999
Q ss_pred CCCeEEEeec-CCcEEEecCCcccccccccccc----cEEEEEEecCC
Q 012712 396 HSTVLASSGI-ESDIKILTPNAADRATLPTNIE----QVCFSIYSADY 438 (458)
Q Consensus 396 ~~~~l~s~~~-d~~i~iw~~~~~~~~~~~~~~~----~v~~~~~s~d~ 438 (458)
+|+.+.+... .+.+.+-|..+........... .+..+++.+..
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 9998887743 4788888887765543322111 25555555544
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.25 E-value=0.003 Score=58.69 Aligned_cols=159 Identities=15% Similarity=0.128 Sum_probs=86.5
Q ss_pred EEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEecCCCeEEEEECCCcceeeeeccC
Q 012712 25 WLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSG 102 (458)
Q Consensus 25 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 102 (458)
|-.-.+.....+++++..-..+.+.++++.-.++.... ..+.-+| .+..|+.++.++.|.-.|..+|+.+.++...
T Consensus 21 W~~~g~~~~~~r~s~l~qI~~~nv~~L~~~W~~~~g~~--~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~ 98 (527)
T TIGR03075 21 WLTYGGGYAGQRYSPLDQINTENVKKLQPAWTFSLGKL--RGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPK 98 (527)
T ss_pred ccccCCCCCCcccCChHhcChhhhccceEEEEEECCCC--CCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCC
Confidence 43333333344555544444455555555555543211 0111111 2456677777888999999999987776322
Q ss_pred CCccee----------EEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcC---CCCeEEEEe
Q 012712 103 HNDNVF----------QAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTC 169 (458)
Q Consensus 103 ~~~~i~----------~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~ 169 (458)
-...+. .+++ .+..++.++.|+.+.-.|..+++.+.......+... ..+.-+| ++ .+++..
T Consensus 99 ~~~~~~~~~~~~~~~rg~av----~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~ 172 (527)
T TIGR03075 99 LPDDVIPVMCCDVVNRGVAL----YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGI 172 (527)
T ss_pred CCcccccccccccccccceE----ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccc-ccccCCcEEECC-EEEEee
Confidence 111111 1222 234677778889999999999988765433222110 0111112 33 333332
Q ss_pred c-----CCCeEEEEeCCCCCccceeee
Q 012712 170 G-----EDGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 170 ~-----~dg~i~iwd~~~~~~~~~~~~ 191 (458)
+ .+|.|..+|.++++.+..+..
T Consensus 173 ~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 173 SGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred cccccCCCcEEEEEECCCCceeEeccC
Confidence 2 368999999999998766554
No 355
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.21 E-value=0.00019 Score=49.25 Aligned_cols=102 Identities=16% Similarity=0.186 Sum_probs=68.9
Q ss_pred eEEEEEec---CC-CEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 64 VNTVSFNT---DG-DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 64 v~~~~~s~---~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
|++|++.. || +.|+.|+.|..|++|+-+ +.+.++ .-.+.|++++-.. ...++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLG---GGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcC---CCEEEEEecCCEEEEEeCcc--
Confidence 67777765 33 689999999999999843 555555 3456788888875 46799999999999997532
Q ss_pred ceeeeeccccccceEEEEE---cCCCCeEEEEecCCCeEEE
Q 012712 140 GVETKLLGKHQGRAHKLAI---EPGSPHVFYTCGEDGLVQH 177 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~---~~~~~~~l~s~~~dg~i~i 177 (458)
.+.. .+.. ..+.++++ ..+|...|++|-.+|.|-+
T Consensus 73 RlWR--iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWR--IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeee--eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222 2212 22444443 3445557899988887743
No 356
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.18 E-value=9.7e-06 Score=71.64 Aligned_cols=75 Identities=17% Similarity=0.152 Sum_probs=63.6
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.....|.|++++|+.+.|+.|..||.|.+||...+..... ...-..+.++|+| +|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp--~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHP--DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcC--CCcEEEEEcCCceEEEEEeecC
Confidence 4678899999999999999999999999999876643322 3445678999999 9999999999999999998543
No 357
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=0.0036 Score=51.04 Aligned_cols=177 Identities=11% Similarity=0.109 Sum_probs=116.7
Q ss_pred eecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc
Q 012712 57 LDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 57 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~ 136 (458)
+.|-...|.++.|+|+.+.|.+......-.||=..+|+.+.++.-..-...-.++|.. ++.+.++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--CCEEEEEehhcceEEEEEEc
Confidence 4555666999999999998888888777778877788888777433344556778886 77777777778888888876
Q ss_pred cccceee-----eecc--cc-ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 137 ERGGVET-----KLLG--KH-QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 137 ~~~~~~~-----~~~~--~~-~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.+..... ..+. .+ +.....++|.|.. +.|+.+-+...+.+|........-...............-..+.+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 6533211 1111 12 5567889999998 566777777778887766433111111110000000012335788
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
+.|++..+.+++-+.+++.+.-.|....
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecCCC
Confidence 9999877788888888888888887654
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.08 E-value=0.0024 Score=55.75 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=124.2
Q ss_pred CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCC---CCcEEEEecC----------CCeEEEEecCCC-cc
Q 012712 173 GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPR---NANLFAVAGS----------DEYTRLYDIRKY-KW 238 (458)
Q Consensus 173 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~----------dg~i~i~d~~~~-~~ 238 (458)
..|++.|..+.+.+..+...+.+ ....+..+.+..+ ...++++|+. .|.|.++++... ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNE------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTE------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred cEEEEEeCCCCeEEEEEECCCCc------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 35788888887776666544221 2223344445432 1467777753 288999999884 10
Q ss_pred CCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCcc
Q 012712 239 DGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTS 318 (458)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (458)
.... . ........++|++++-- ++ .|+++.+..+++|++....
T Consensus 76 ~~~l---------~-~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~------------------------- 118 (321)
T PF03178_consen 76 NFKL---------K-LIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSK------------------------- 118 (321)
T ss_dssp --EE---------E-EEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTS-------------------------
T ss_pred ceEE---------E-EEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcc-------------------------
Confidence 0000 0 01112235678888766 44 4777788999999998742
Q ss_pred ccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC-CeEEEEee--cCCceeeEEEecC
Q 012712 319 AASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG-GELIRVIE--ADRHVVNCIEPHP 395 (458)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~ 395 (458)
.......+.....+.++.. .+++++.|.....+.++.... ...+..+. .....++++.+-+
T Consensus 119 -------------~l~~~~~~~~~~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~ 182 (321)
T PF03178_consen 119 -------------TLLKKAFYDSPFYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV 182 (321)
T ss_dssp -------------SEEEEEEE-BSSSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-
T ss_pred -------------cchhhheecceEEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec
Confidence 0111111112213666655 366999998888888886654 33333332 2345688999987
Q ss_pred CCCeEEEeecCCcEEEecCCcc-------c-cc---ccccccccEEEE---EEecC--C------cEEEeeecCCceEE
Q 012712 396 HSTVLASSGIESDIKILTPNAA-------D-RA---TLPTNIEQVCFS---IYSAD--Y------WWSKSQNFSCSILL 452 (458)
Q Consensus 396 ~~~~l~s~~~d~~i~iw~~~~~-------~-~~---~~~~~~~~v~~~---~~s~d--~------~~l~s~~~d~~i~~ 452 (458)
+++.++.++.+|.+.++..... . .+ ........|+++ +..|. + ..++.++.+|.|.+
T Consensus 183 d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 183 DEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred CCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 7778999999999999987632 1 11 111222346666 44552 2 24778899999874
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.3e-05 Score=69.68 Aligned_cols=90 Identities=14% Similarity=0.246 Sum_probs=75.5
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceee-EEEecCCCCeEEEeecCCcEEEecCCccccccc
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVN-CIEPHPHSTVLASSGIESDIKILTPNAADRATL 422 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 422 (458)
.+..+.| +|.-.++|.+..+|.|.+..++ .+.+.++..|...++ +++|.|||+.||.|-.||+|++.|++.+..+.-
T Consensus 22 ~i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 22 NIKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ceEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 3777888 9999999999999999999997 788888887777777 999999999999999999999999998866533
Q ss_pred --ccccccEEEEEEe
Q 012712 423 --PTNIEQVCFSIYS 435 (458)
Q Consensus 423 --~~~~~~v~~~~~s 435 (458)
......|..+-|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 3344456666675
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.04 E-value=0.0061 Score=53.20 Aligned_cols=135 Identities=15% Similarity=0.097 Sum_probs=78.7
Q ss_pred CeEEEEECCCcceeeeeccCCCcceeEEEEccCCC-----CeEEEEEcC----------CCcEEEeecccc----cceee
Q 012712 83 RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTD-----DRSIVTCAA----------DGQVRHAQILER----GGVET 143 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~l~s~~~----------dg~i~vw~~~~~----~~~~~ 143 (458)
..|++.|..+.+.+..+.-...+.+.+++...+.+ ..+|+.|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888888888776665444455666665443322 467776643 288999999884 22222
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
..-....++|++++-. ++ +++++. ++.|.+|++...+ ....-... ....+.++... ++++++|
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~~~l~~~~~~~---------~~~~i~sl~~~---~~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNSKTLLKKAFYD---------SPFYITSLSVF---KNYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETTSSEEEEEEE----------BSSSEEEEEEE---TTEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCcccchhhheec---------ceEEEEEEecc---ccEEEEE
Confidence 2223456788888776 34 444433 4789999998887 33222211 11235555544 3477777
Q ss_pred cCCCeEEEEec
Q 012712 223 GSDEYTRLYDI 233 (458)
Q Consensus 223 ~~dg~i~i~d~ 233 (458)
.....+.++..
T Consensus 146 D~~~sv~~~~~ 156 (321)
T PF03178_consen 146 DAMKSVSLLRY 156 (321)
T ss_dssp ESSSSEEEEEE
T ss_pred EcccCEEEEEE
Confidence 76666666644
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.012 Score=53.64 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=71.8
Q ss_pred ceEEEEEecCCCEEEEe-----cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---------
Q 012712 63 CVNTVSFNTDGDILISG-----SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG--------- 128 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg--------- 128 (458)
.+...++||||++||.+ +....+++.|+++++.+...... .....+.|.+ +++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~--d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD--DGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT--TSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC--CCCEEEEEEeCcccccccCCC
Confidence 34467899999998854 22247999999999765543221 1223399999 877776554322
Q ss_pred --cEEEeecccccceeeeeccccccc--eEEEEEcCCCCeEEEEecCC---CeEEEEeCCCC
Q 012712 129 --QVRHAQILERGGVETKLLGKHQGR--AHKLAIEPGSPHVFYTCGED---GLVQHFDLRTG 183 (458)
Q Consensus 129 --~i~vw~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~ 183 (458)
.|..|.+.+........+...... ...+..++++..+++..... ..+.+.|+..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 377788766544322224433332 56788899996656554433 45778888775
No 362
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=98.00 E-value=0.0097 Score=52.64 Aligned_cols=92 Identities=22% Similarity=0.301 Sum_probs=60.8
Q ss_pred EEEEecCCCEEEEecCCCeEEE---EECCC-c----ceeeeec--cCCC--cceeEEEEccC---------CCCeEEEEE
Q 012712 66 TVSFNTDGDILISGSDDRRVIL---WDWKT-E----RVKLSFH--SGHN--DNVFQAKIMPF---------TDDRSIVTC 124 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~i---wd~~~-~----~~~~~~~--~~~~--~~i~~~~~~~~---------~~~~~l~s~ 124 (458)
.++.+|++++||.+..+..+.+ |+... + ....... ..+. +.|+++.+.|. .|...++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5678999999999988876665 64321 1 1111111 1122 68999888774 356789999
Q ss_pred cCCCcEEEeecccccceeeeeccccccceEEEEEcC
Q 012712 125 AADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 125 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (458)
..+|.|++|.- ++..+.. -.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~--Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLS--QLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHH--HhcCccceEEEEecc
Confidence 99999999986 4454443 233777887777643
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.99 E-value=2.6e-05 Score=43.11 Aligned_cols=37 Identities=43% Similarity=0.760 Sum_probs=33.1
Q ss_pred eeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 53 IYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 53 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999999999999999999999996
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.98 E-value=3e-05 Score=42.85 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=34.7
Q ss_pred CeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 375 GELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 375 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999999999999996
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.97 E-value=0.00096 Score=45.91 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=66.7
Q ss_pred eeEEEEecCCC---cEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccc
Q 012712 345 VKGVNFFGPKC---EYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRAT 421 (458)
Q Consensus 345 i~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~ 421 (458)
|.++++++-++ +.|++|++|..||+|+- .+.+.++... +.|++++-... ..++.+-.+|+|-+|+-......
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWR- 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWR- 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcceeee-
Confidence 45666544343 58999999999999984 4667777644 46777776665 56888999999999976433222
Q ss_pred cccccccEEEEE-E--ecCC-cEEEeeecCCceE
Q 012712 422 LPTNIEQVCFSI-Y--SADY-WWSKSQNFSCSIL 451 (458)
Q Consensus 422 ~~~~~~~v~~~~-~--s~d~-~~l~s~~~d~~i~ 451 (458)
..... .+.+++ + .-|| .-|++|-.+|.|-
T Consensus 77 iKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 22222 244444 3 3344 5678888888774
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0082 Score=51.13 Aligned_cols=226 Identities=10% Similarity=0.055 Sum_probs=122.9
Q ss_pred EEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 156 LAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 156 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
-.|.++...++.+--..+.|.-|+..+++.. .+.. ...+.++..-.. +..|+++.. .+.+++..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-----------p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~ 94 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-----------PGGFSSGALIDA-GGRLIACEH--GVRLLDPDT 94 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-----------CCCcccceeecC-CCeEEEEcc--ccEEEeccC
Confidence 3567777567777777888999998866432 2221 112333333333 234544433 256666644
Q ss_pred CccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC----------cEEEEEccCCCCCCCCCCCCccc
Q 012712 236 YKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE----------FIYLFTQDMGLGPNPPPSSPVST 305 (458)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----------~i~i~~~~~~~~~~~~~~~~~~~ 305 (458)
+...... ............+.+...|+|.+.++.... .-.+|-+...
T Consensus 95 ~~~~t~~----------~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~------------- 151 (307)
T COG3386 95 GGKITLL----------AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD------------- 151 (307)
T ss_pred CceeEEe----------ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-------------
Confidence 4321000 000111112455677788888877654441 0122222210
Q ss_pred cccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEecC--C----eE-
Q 012712 306 RSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKKG--G----EL- 377 (458)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~~--~----~~- 377 (458)
....+.+..+-. .-+.++| |||++.|+.+.. .+.|+.|++.. + +.
T Consensus 152 ------------------------g~~~~l~~~~~~--~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~ 204 (307)
T COG3386 152 ------------------------GGVVRLLDDDLT--IPNGLAF-SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG 204 (307)
T ss_pred ------------------------CCEEEeecCcEE--ecCceEE-CCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence 112233333222 2578898 999988877654 47888887752 2 11
Q ss_pred EEEeecCCceeeEEEecCCCCeEEEeecCC-cEEEecCCccccc-ccccccccEEEEEEec-CCcEE-EeeecC
Q 012712 378 IRVIEADRHVVNCIEPHPHSTVLASSGIES-DIKILTPNAADRA-TLPTNIEQVCFSIYSA-DYWWS-KSQNFS 447 (458)
Q Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~-~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l-~s~~~d 447 (458)
...+..+.+..-.++...+|.+.+++-.+| .|.+|+.+ +++. .+.-....+++++|-- +.+.| +|+...
T Consensus 205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 111222345667788888888876555554 99999999 5444 3333336788888864 44443 444444
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.96 E-value=0.0074 Score=51.39 Aligned_cols=225 Identities=16% Similarity=0.137 Sum_probs=118.1
Q ss_pred EEccCCCCeE-EEEEcCCCcEEEeecccccceeeeeccccccceEEE-EEcCCCCeEEEEecCCCeEEEEeCCCCCccce
Q 012712 111 KIMPFTDDRS-IVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKL-AIEPGSPHVFYTCGEDGLVQHFDLRTGAATEL 188 (458)
Q Consensus 111 ~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 188 (458)
.|.+ +... +.+--..+.|.-|+..+++... +. +...+.++ .....+ .|+++.. -+.+++.+++.....
T Consensus 31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g~~~~---~~-~p~~~~~~~~~d~~g--~Lv~~~~--g~~~~~~~~~~~~t~ 100 (307)
T COG3386 31 VWDP--DRGALLWVDILGGRIHRLDPETGKKRV---FP-SPGGFSSGALIDAGG--RLIACEH--GVRLLDPDTGGKITL 100 (307)
T ss_pred cCcC--CCCEEEEEeCCCCeEEEecCCcCceEE---EE-CCCCcccceeecCCC--eEEEEcc--ccEEEeccCCceeEE
Confidence 4555 5553 3444456778888876554322 22 22223333 334443 3444433 356677665554322
Q ss_pred eeecccCCCCcceeecceEEEEECCCCCcEEEEecCC------------CeEEEEecCCCccCCCccCCCCCCCcCCCcc
Q 012712 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD------------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNL 256 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (458)
+..... .. .....+.+...|++ .+.+ +... |.++.+|.. +. ...+
T Consensus 101 ~~~~~~-~~----~~~r~ND~~v~pdG-~~wf-gt~~~~~~~~~~~~~~G~lyr~~p~-g~---------------~~~l 157 (307)
T COG3386 101 LAEPED-GL----PLNRPNDGVVDPDG-RIWF-GDMGYFDLGKSEERPTGSLYRVDPD-GG---------------VVRL 157 (307)
T ss_pred eccccC-CC----CcCCCCceeEcCCC-CEEE-eCCCccccCccccCCcceEEEEcCC-CC---------------EEEe
Confidence 221111 11 12356778888884 3333 3322 224444431 11 1222
Q ss_pred ccccccceeEEEeCCCCcEEEEecC--CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC-c
Q 012712 257 IGDEQVGITGLAFSDQSELLVSYND--EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA-P 333 (458)
Q Consensus 257 ~~~~~~~i~~~~~~~~~~~l~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 333 (458)
...+-..-+.|+||||++.|..... ..|..|++........ .+. .
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~--------------------------------~~~~~ 205 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG--------------------------------GRRGF 205 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC--------------------------------CcceE
Confidence 3333445678999999987776654 4677777653100000 011 1
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCC-eEEEEEecCCeEEEEeecCCceeeEEEec-CCCCeEEEee
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-RIFIWKKKGGELIRVIEADRHVVNCIEPH-PHSTVLASSG 404 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~ 404 (458)
..+..... ..-.++. +.+|.+-+++-.+| .|.+|+.. |+++..+.-....+++++|- |+.+.|...+
T Consensus 206 ~~~~~~~G--~PDG~~v-DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 206 VDFDEEPG--LPDGMAV-DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEccCCCC--CCCceEE-eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 11111111 1334555 78888876655554 99999987 99999988776778888885 5556554443
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.95 E-value=0.02 Score=54.76 Aligned_cols=354 Identities=13% Similarity=0.092 Sum_probs=173.0
Q ss_pred cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCC----eEEEEEcCCCcEEEeecccccceeeee-
Q 012712 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDD----RSIVTCAADGQVRHAQILERGGVETKL- 145 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~s~~~dg~i~vw~~~~~~~~~~~~- 145 (458)
.+...++.++.++.+...++..+.............|.|+.++|..++ +.++.|..+..+.+.-...........
T Consensus 497 ~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~ 576 (1096)
T KOG1897|consen 497 ANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQ 576 (1096)
T ss_pred ecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeec
Confidence 334455556665666666666555333332344678999999985333 357777776655544332222222211
Q ss_pred cc--ccccceEEEEEcCCCCeEEEEecCCCeEEEEeC--CCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEE
Q 012712 146 LG--KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDL--RTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAV 221 (458)
Q Consensus 146 ~~--~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 221 (458)
+. .-...|.-..+-.+. .+|+++..||.+..+.+ .++.....-+ .+....++.--.|+..+...+++
T Consensus 577 l~~~~iPRSIl~~~~e~d~-~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--------~~lGt~P~~Lr~f~sk~~t~vfa 647 (1096)
T KOG1897|consen 577 LSGEIIPRSILLTTFEGDI-HYLLVALGDGALLYFVLDINTGQLSDRKK--------VTLGTQPISLRTFSSKSRTAVFA 647 (1096)
T ss_pred cCCCccchheeeEEeeccc-eEEEEEcCCceEEEEEEEcccceEccccc--------cccCCCCcEEEEEeeCCceEEEE
Confidence 11 112334444555555 68899999999876654 4443211110 00022233333454443444444
Q ss_pred ecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC--CcEEEEecCCcEEEEEccCCCCCCCCC
Q 012712 222 AGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ--SELLVSYNDEFIYLFTQDMGLGPNPPP 299 (458)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~i~i~~~~~~~~~~~~~ 299 (458)
++. +-..+|..+. ++... +..... -..+ +.|+.+ ...++.+..+.+.+..++.-.......
T Consensus 648 ~sd-rP~viY~~n~-kLv~s-----------pls~ke--v~~~--c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irt 710 (1096)
T KOG1897|consen 648 LSD-RPTVIYSSNG-KLVYS-----------PLSLKE--VNHM--CPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRT 710 (1096)
T ss_pred eCC-CCEEEEecCC-cEEEe-----------ccchHH--hhhh--cccccccCCceEEEecCCceEEEEecchhhcceee
Confidence 433 3333333322 11000 000000 0011 112222 346777777777766655432111100
Q ss_pred CCCccccccccccCCCCccccC-------CCC--CCcc--------cccCceeecCc-----cceeeeeEEEEecCC-Cc
Q 012712 300 SSPVSTRSEASEMGSDHTSAAS-------PST--ANTD--------VRIAPQVYKGH-----RNCVTVKGVNFFGPK-CE 356 (458)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~--------~~~~~~~~~~~-----~~~~~i~~~~~~s~~-~~ 356 (458)
-+....+....+.+......+ ... .... .......+..| +....+.++.| ..| +.
T Consensus 711 -vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~-~~d~~t 788 (1096)
T KOG1897|consen 711 -VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF-TDDPNT 788 (1096)
T ss_pred -ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee-cCCCce
Confidence 011111111111110000000 000 0000 01111222222 22223555556 555 67
Q ss_pred EEEEec----------CCCeEEEEEecCCeEEEEeecC--CceeeEEEecCCCCeEEEeecCCcEEEecCCcc-cccccc
Q 012712 357 YVVSGS----------DCGRIFIWKKKGGELIRVIEAD--RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA-DRATLP 423 (458)
Q Consensus 357 ~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~-~~~~~~ 423 (458)
+++.|+ ..|+|.+|....++.++....+ .+.+.++.. -+|++||. -...|++|+...+ ++..--
T Consensus 789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~ 865 (1096)
T KOG1897|consen 789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC 865 (1096)
T ss_pred EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh
Confidence 787775 3489999998875555444332 344555542 25777764 4578999999888 444556
Q ss_pred cccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 424 TNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.+..++..+...-.|..++.|.--++|.+-.|
T Consensus 866 ~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 866 NISNPIIALDLQVKGDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence 67778999999999999999998888877655
No 369
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.94 E-value=0.013 Score=52.07 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=88.3
Q ss_pred CCEEEEecCCCeEEEEECCCccee---eeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccc------
Q 012712 73 GDILISGSDDRRVILWDWKTERVK---LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGG------ 140 (458)
Q Consensus 73 ~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~------ 140 (458)
...+++||..|.++||+...++.. ..+...-..+|..++.-.+ .+...||.- .-..+.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998654311 1111345678888886543 123345553 446788888733211
Q ss_pred -eeeeecccccc--ceEEEEEcC----CCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 141 -VETKLLGKHQG--RAHKLAIEP----GSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 141 -~~~~~~~~~~~--~v~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
........|.- ....+++-| .++.++..-+.||.+.+++-+.-.....+.. ..-...+++.|
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~llPgPl~Y~~ 184 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FLLPGPLCYCP 184 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CCCCcCeEEee
Confidence 11111223332 222333322 2246788889999999998654432222211 11134567777
Q ss_pred CCCcEEEEecCCCeEEEEecCC
Q 012712 214 RNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
. ...|++++.+..+.-|....
T Consensus 185 ~-tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 185 R-TDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred c-CCEEEEecCceeEEEecHHH
Confidence 6 57888999888898887643
No 370
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.014 Score=52.11 Aligned_cols=267 Identities=14% Similarity=0.131 Sum_probs=156.1
Q ss_pred ceEEEEEecCCCEEEEec-CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeE-EEEEcCCCcEEEeecccccc
Q 012712 63 CVNTVSFNTDGDILISGS-DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRS-IVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~s~~~dg~i~vw~~~~~~~ 140 (458)
....+...+++..+.... ....+..-+...... ......-...-..++.++ .+.. .++...+..|.+.|......
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~-~~~~~~g~~~p~~i~v~~--~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTV-TQSLSVGGVYPAGVAVNP--AGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccccccee-eeeccCCCccccceeeCC--CCCeEEEecCCCCeEEEEcCcccce
Confidence 455677788885444332 222455555442222 111111113345677777 7764 45555568999999776665
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANL 218 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 218 (458)
....... .....++++|+++.+.++-. .++.+.+.|..+.+....... .. ....++++|++...
T Consensus 109 ~~~~~vG---~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v----------G~-~P~~~a~~p~g~~v 174 (381)
T COG3391 109 LGSIPVG---LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV----------GN-TPTGVAVDPDGNKV 174 (381)
T ss_pred eeEeeec---cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec----------CC-CcceEEECCCCCeE
Confidence 5443222 25678999999966666655 378999999888887766432 11 12789999985434
Q ss_pred EEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC----CcEEEEEccCCCC
Q 012712 219 FAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND----EFIYLFTQDMGLG 294 (458)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~i~i~~~~~~~~ 294 (458)
.++-..++.|.+.|........ .. .............+.++|+|..+....+ +.+...|..++..
T Consensus 175 yv~~~~~~~v~vi~~~~~~v~~-~~----------~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 175 YVTNSDDNTVSVIDTSGNSVVR-GS----------VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEEecCCCeEEEEeCCCcceec-cc----------cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 5555578999999977665331 00 0001111234567889999986655442 2577777665321
Q ss_pred CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC-CCeEEEEEec
Q 012712 295 PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD-CGRIFIWKKK 373 (458)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 373 (458)
... ....... ....+.. +|+|+++.+... .+.+.+-|..
T Consensus 244 ~~~-------------------------------------~~~~~~~--~~~~v~~-~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 244 TAT-------------------------------------DLPVGSG--APRGVAV-DPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEe-------------------------------------ccccccC--CCCceeE-CCCCCEEEEEecCCCeEEEEeCC
Confidence 110 0011110 1234555 999999888744 4899999998
Q ss_pred CCeEEEEeecCCc---eeeEEEecCCC
Q 012712 374 GGELIRVIEADRH---VVNCIEPHPHS 397 (458)
Q Consensus 374 ~~~~~~~~~~~~~---~v~~~~~s~~~ 397 (458)
+............ .+..+++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 284 TDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CCceeeeecccccccccceeccceeec
Confidence 8877776544332 35556655543
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.92 E-value=0.023 Score=54.35 Aligned_cols=322 Identities=11% Similarity=0.061 Sum_probs=172.2
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
..|.-..|-.|..+|.++..||.+.-|.++.......-. .--..++.--.|+. .+..-+.+..|.-..+|.-+ +
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s--k~~t~vfa~sdrP~viY~~n-~ 660 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS--KSRTAVFALSDRPTVIYSSN-G 660 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEee--CCceEEEEeCCCCEEEEecC-C
Confidence 456666676678899999999998877665443222110 11234555555665 44433444445555555432 2
Q ss_pred cceeeeeccccccceE-EEEEcCC-CCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC
Q 012712 139 GGVETKLLGKHQGRAH-KLAIEPG-SPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA 216 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~-~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 216 (458)
+.... .+.- ..+. .+.|+.+ .+..++++. .+.+++..+..-+....-..+ -...+..+++.+. .
T Consensus 661 kLv~s-pls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp---------l~~~prrI~~q~~-s 726 (1096)
T KOG1897|consen 661 KLVYS-PLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP---------LGESPRRICYQES-S 726 (1096)
T ss_pred cEEEe-ccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeec---------CCCChhheEeccc-c
Confidence 22211 0110 0111 1223222 223344444 345666655433222211111 1123455666653 2
Q ss_pred cEEEEecC-----------C---CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCC-CcEEEEecC
Q 012712 217 NLFAVAGS-----------D---EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQ-SELLVSYND 281 (458)
Q Consensus 217 ~~l~~~~~-----------d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~ 281 (458)
..+.+.+. . ..++++|-++.+.....++.+. +....+.++.|..| +.+++.|+.
T Consensus 727 l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~-----------E~~~Si~s~~~~~d~~t~~vVGT~ 795 (1096)
T KOG1897|consen 727 LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERN-----------ETALSIISCKFTDDPNTYYVVGTG 795 (1096)
T ss_pred eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccccc-----------ceeeeeeeeeecCCCceEEEEEEE
Confidence 33333221 1 2367777777665443332211 11234556667777 667776641
Q ss_pred -----------CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 282 -----------EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 282 -----------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
|.|.+|..... ..++....+.-...+.++..
T Consensus 796 ~v~Pde~ep~~GRIivfe~~e~--------------------------------------~~L~~v~e~~v~Gav~aL~~ 837 (1096)
T KOG1897|consen 796 LVYPDENEPVNGRIIVFEFEEL--------------------------------------NSLELVAETVVKGAVYALVE 837 (1096)
T ss_pred eeccCCCCcccceEEEEEEecC--------------------------------------Cceeeeeeeeeccceeehhh
Confidence 24666665541 12222222222223555543
Q ss_pred ecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--ccccccc--ccc
Q 012712 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--ADRATLP--TNI 426 (458)
Q Consensus 351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~~~~~~~--~~~ 426 (458)
-+|++||.- +..|++|+..+.+.++.-..|..++..+...-.|..++.|..-+.+.+..... +....+. -+.
T Consensus 838 --fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p 913 (1096)
T KOG1897|consen 838 --FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP 913 (1096)
T ss_pred --hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc
Confidence 378888755 46899999988877777777888899999999999999998888777655443 3344333 345
Q ss_pred ccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 427 EQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 427 ~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
..++++.+-.+..++.+ ..+|.+++-+
T Consensus 914 ~Wmtaveil~~d~ylga-e~~gNlf~v~ 940 (1096)
T KOG1897|consen 914 NWMTAVEILDDDTYLGA-ENSGNLFTVR 940 (1096)
T ss_pred cceeeEEEecCceEEee-cccccEEEEE
Confidence 55777777766666643 5566665543
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.025 Score=50.87 Aligned_cols=179 Identities=11% Similarity=0.033 Sum_probs=89.1
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeee-----eccccccceEEEEE
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETK-----LLGKHQGRAHKLAI 158 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~-----~~~~~~~~v~~~~~ 158 (458)
.|.||+.. |+.+.++.-.+ +.|.++.|.. + +.|+....||.++++|+.... .... ...-....+....+
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~--~-e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTD--D-EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECC--C-CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccccc
Confidence 59999965 66666653333 8999999985 4 556666789999999986332 1000 00111122223334
Q ss_pred cCCCCeEEEEecCCCeEEEEeCCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 159 EPGSPHVFYTCGEDGLVQHFDLRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
..+| - +.-..++.+.+.+--... ....+...+......+..........++.+ ....+....++.+.+.+....+
T Consensus 136 ~~~G-i--vvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~~~i~~~~g~~i~~i~~~~~~ 211 (410)
T PF04841_consen 136 YKNG-I--VVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD-RVVEILLANGETIYIIDENSFK 211 (410)
T ss_pred CCCC-E--EEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC-cceEEEEecCCEEEEEEccccc
Confidence 4455 2 333344555444322211 111111000000000000000001234444 3344444555666655443211
Q ss_pred cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC-CcEEEEEccC
Q 012712 238 WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND-EFIYLFTQDM 291 (458)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~i~i~~~~~ 291 (458)
. . ...+++..++.||+|+++|...+ +.+.+...+-
T Consensus 212 ~------------------i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 212 Q------------------I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred c------------------c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 0 1 12468999999999999998875 5777776443
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.79 E-value=0.018 Score=49.06 Aligned_cols=250 Identities=11% Similarity=0.065 Sum_probs=126.9
Q ss_pred CCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeee---cc
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTC---RP 193 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~ 193 (458)
.++.|+.|..+| +.+++......... .. +...|..+...|+-+ .+++-+ |+.+.++++..-........ ..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~-i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTR-IL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCcccee-Ee--ecceEEEEEEecccC-EEEEEc-CCccEEEEchhhccccccccccccc
Confidence 678899998888 88998832222211 11 233499999999874 444433 49999999886655442110 00
Q ss_pred cC-CCCcceeecceEEEE--ECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeC
Q 012712 194 ID-DRRNYMTVVNLNAIA--IDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFS 270 (458)
Q Consensus 194 ~~-~~~~~~~~~~v~~~~--~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (458)
.. ..........+...+ -.+.+...++ ......|.+|.......... . ....+. -...+..++|.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~----~-----~~ke~~--lp~~~~~i~~~ 147 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFS----K-----LLKEIS--LPDPPSSIAFL 147 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCccccc----c-----eeEEEE--cCCCcEEEEEe
Confidence 00 000000112333333 1122233444 44455899988876421100 0 001111 13567888888
Q ss_pred CCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEE
Q 012712 271 DQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNF 350 (458)
Q Consensus 271 ~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 350 (458)
+..++.+..+...+.|+.++....-...... .............+..+.
T Consensus 148 --~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~----------------------------~~~~~~~~~~~~~~~~~~- 196 (275)
T PF00780_consen 148 --GNKICVGTSKGFYLIDLNTGSPSELLDPSDS----------------------------SSSFKSRNSSSKPLGIFQ- 196 (275)
T ss_pred --CCEEEEEeCCceEEEecCCCCceEEeCccCC----------------------------cchhhhcccCCCceEEEE-
Confidence 5578888788899999986432211100000 000000000110122222
Q ss_pred ecCCCcEEEEecCCCeEEEEEecCCeEEE--EeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712 351 FGPKCEYVVSGSDCGRIFIWKKKGGELIR--VIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (458)
Q Consensus 351 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 423 (458)
-+++.+|++- |..-.+.|. .|++.+ .+.-.. .+.++++ ...+|+..+. +.|.||++.++++.+..
T Consensus 197 -~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 197 -LSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred -eCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEE
Confidence 2445677653 223333343 555443 344332 4556666 3457776665 56999999999776443
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.029 Score=50.54 Aligned_cols=68 Identities=13% Similarity=0.260 Sum_probs=48.2
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
.+..++. ||+|+++|.-..+|.+.+.+..-.+.+.++... ......|.|.-+...++.- ...+.+...
T Consensus 218 ~i~~iav-Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~ 286 (410)
T PF04841_consen 218 PIIKIAV-SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGP 286 (410)
T ss_pred CeEEEEE-CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECC
Confidence 3888998 999999999999999999887666666666544 3467788887655433332 345555553
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.75 E-value=0.016 Score=47.33 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=118.6
Q ss_pred EEeeeeeEeecC-CCceEEEEEecCCCEEEEecCCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 49 LRLGIYAKLDKH-RGCVNTVSFNTDGDILISGSDDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 49 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
..+++++++... ......+.|..+|.++-+.+.-| .|+.+|+.+++......-...----.++.. ++....-.=
T Consensus 31 ~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~---~d~l~qLTW 107 (264)
T PF05096_consen 31 YSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL---GDKLYQLTW 107 (264)
T ss_dssp EEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE---TTEEEEEES
T ss_pred eeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE---CCEEEEEEe
Confidence 455677776622 34556788878888888887765 799999999987655422222222234443 344444455
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecc
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (458)
.++...+||..+-+.+....+. ..=..++ .++..+ +.......++++|.++.+....+....... ....
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~L-i~SDGS~~L~~~dP~~f~~~~~i~V~~~g~-----pv~~ 176 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRL-IMSDGSSRLYFLDPETFKEVRTIQVTDNGR-----PVSN 176 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCE-EEE-SSSEEEEE-TTT-SEEEEEE-EETTE-----E---
T ss_pred cCCeEEEEccccceEEEEEecC---CcceEEE--cCCCEE-EEECCccceEEECCcccceEEEEEEEECCE-----ECCC
Confidence 6788999999887776654443 3455666 345344 444445689999998887766665432111 2234
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc-EEEEec
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE-LLVSYN 280 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~ 280 (458)
++-+.+-. +.+.|=.-....|...|..+++......+..................-.+.||+.|... ++++|-
T Consensus 177 LNELE~i~--G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYIN--GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEET--TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEEc--CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 66677762 56666666667788888888776554332211000000000011134578999988765 455543
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.74 E-value=0.0069 Score=57.85 Aligned_cols=148 Identities=9% Similarity=0.078 Sum_probs=91.3
Q ss_pred CCEEEEe-cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeecccccc--eeeee-
Q 012712 73 GDILISG-SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQILERGG--VETKL- 145 (458)
Q Consensus 73 ~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~~~~~~--~~~~~- 145 (458)
.++|+.- .....|.-.|++.|+.+..+......+|..++-... -.....+.|-.+..+..||.+-... +....
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444433 345678888999999988884333333555433210 0123455666678899999986542 11100
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
.........|++-+.+| .+|.|+.+|.||+||- .+...++.- + + -..+|..|..+.| |+++++.+ +
T Consensus 573 ~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~l-p------~--lG~pI~~iDvt~D-GkwilaTc-~ 638 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTAL-P------G--LGDPIIGIDVTAD-GKWILATC-K 638 (794)
T ss_pred ccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcC-C------C--CCCCeeEEEecCC-CcEEEEee-c
Confidence 11234567888888888 4899999999999993 332222111 1 1 3458999999998 56665444 4
Q ss_pred CeEEEEecC
Q 012712 226 EYTRLYDIR 234 (458)
Q Consensus 226 g~i~i~d~~ 234 (458)
..+.+++..
T Consensus 639 tyLlLi~t~ 647 (794)
T PF08553_consen 639 TYLLLIDTL 647 (794)
T ss_pred ceEEEEEEe
Confidence 578888864
No 377
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0002 Score=64.01 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=77.6
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCccee-EEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-QAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
-.|.-+.|+|.-.++|++..+|.|.+..+. .+.+..+ .-|..+++ +++|.| ||+.||.|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRP--DGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecC--CCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999999999999988 6666777 44666777 999999 999999999999999999999887
Q ss_pred eeeeeccccccceEEEEEcC
Q 012712 141 VETKLLGKHQGRAHKLAIEP 160 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~ 160 (458)
+... .......|.++-|.+
T Consensus 97 l~~~-~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSF-LFSVETDISKGIWDR 115 (665)
T ss_pred eecc-ccccccchheeeccc
Confidence 6653 223456777888865
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.73 E-value=0.01 Score=48.45 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=108.3
Q ss_pred CCCCeEEEeeCCC--cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeE
Q 012712 8 NNNKRARTSVDKA--LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRV 85 (458)
Q Consensus 8 ~~~~~l~~~~~d~--~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i 85 (458)
.++.++-+.+.-| .|+.+|+++|+...+ ..+.. .--=-.++... ++...-.=.++..
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-------------------~~l~~-~~FgEGit~~~-d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-------------------VPLPP-RYFGEGITILG-DKLYQLTWKEGTG 112 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-------------------EE-TT-T--EEEEEEET-TEEEEEESSSSEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-------------------EECCc-cccceeEEEEC-CEEEEEEecCCeE
Confidence 4455556655444 799999999887643 11211 11111233332 2333334567899
Q ss_pred EEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc---cceEEEEEcCCC
Q 012712 86 ILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ---GRAHKLAIEPGS 162 (458)
Q Consensus 86 ~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~ 162 (458)
.+||..+.+.+.++. ..+.=+.++. |++.|+.+.....+.++|..+.+........... ..++-+.|. +|
T Consensus 113 f~yd~~tl~~~~~~~--y~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP--YPGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp EEEETTTTEEEEEEE---SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred EEEccccceEEEEEe--cCCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 999999988888773 3345567773 7778888777789999998876665543333332 345566776 45
Q ss_pred CeEEEEecCCCeEEEEeCCCCCccceeeecccCCC-----CcceeecceEEEEECCCCCcEEEEec
Q 012712 163 PHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 163 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.+.+=.-....|...|..+|+....+........ ..+....-.+.++++|..+.++++|=
T Consensus 186 -~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 186 -KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred -EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 5666566667888889999988776654332110 01112335789999998666677664
No 379
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.66 E-value=0.0021 Score=61.15 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCeEEEEE-cCCCcEEEeecccccceeeeeccccccc-eEEEEEcCCC------CeEEEEecCCCeEEEEeCCCCCccce
Q 012712 117 DDRSIVTC-AADGQVRHAQILERGGVETKLLGKHQGR-AHKLAIEPGS------PHVFYTCGEDGLVQHFDLRTGAATEL 188 (458)
Q Consensus 117 ~~~~l~s~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~------~~~l~s~~~dg~i~iwd~~~~~~~~~ 188 (458)
+.++|+.- .....|.-.|++.++.+.. +..+... |..+ .|+. +...+.|-.+..+..||.|-.... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~e--W~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEE--WKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-L 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEE--eecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCc-e
Confidence 44444443 3456788889988887766 4434432 4444 3321 123466777788999999864311 1
Q ss_pred eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEE
Q 012712 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (458)
... . ...........|++-+.+ .+||+|+.+|.||+||-- ++ ..+..+.+-..+|..|.
T Consensus 567 v~~-~---~k~Y~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iD 625 (794)
T PF08553_consen 567 VDS-Q---SKQYSSKNNFSCFATTED--GYIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGID 625 (794)
T ss_pred eec-c---ccccccCCCceEEEecCC--ceEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEE
Confidence 110 0 011124446788888876 389999999999999942 22 12334445568999999
Q ss_pred eCCCCcEEEEecCCcEEEEEcc
Q 012712 269 FSDQSELLVSYNDEFIYLFTQD 290 (458)
Q Consensus 269 ~~~~~~~l~~~~~~~i~i~~~~ 290 (458)
.+.||+++++.+...+.+++..
T Consensus 626 vt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 626 VTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ecCCCcEEEEeecceEEEEEEe
Confidence 9999999999999999999864
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.58 E-value=0.037 Score=52.08 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=84.3
Q ss_pred CCceEEEEEecCCCEEEEec------CCC--eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-----
Q 012712 61 RGCVNTVSFNTDGDILISGS------DDR--RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD----- 127 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~------~d~--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d----- 127 (458)
...+.+.+++|||+.+|... .|. .|.+++.. +.. ..+..+. ......|+| +|+.|++....
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~PsWsp--DG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPSWSL--DADAVWVVVDGNTVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCceECC--CCCceEEEecCcceEE
Confidence 34678999999999887654 233 45555542 222 3332332 488899999 98888776532
Q ss_pred -------CcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEE---EeCCCCCccceeeecccCCC
Q 012712 128 -------GQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQH---FDLRTGAATELFTCRPIDDR 197 (458)
Q Consensus 128 -------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~ 197 (458)
+.+.+.++..++... .....|..+.|+|||.++++.. ++.|.+ -....+. ...-.......
T Consensus 423 v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~-~~l~~~~~l~~- 493 (591)
T PRK13616 423 VIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQ-YALTNPREVGP- 493 (591)
T ss_pred EeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCc-eeecccEEeec-
Confidence 222222332222111 2345799999999996555444 467776 3333443 11100000000
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (458)
+ ....+..+.|.++ +. |+++..++.-.+|.+.
T Consensus 494 -~--l~~~~~~l~W~~~-~~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 -G--LGDTAVSLDWRTG-DS-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred -c--cCCccccceEecC-CE-EEEEecCCCCceEEEe
Confidence 0 1123577899987 44 4455555544455543
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.0032 Score=55.50 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=87.6
Q ss_pred EEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCc--------EEEEecCCcEEEEEc
Q 012712 218 LFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSE--------LLVSYNDEFIYLFTQ 289 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~~~~~~~i~i~~~ 289 (458)
++..+.....++-.|+..++.+....+. ..|+-+.+.|+.+ .|+.-++..|.-||+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~----------------~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE----------------DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc----------------CCcceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4455666667888888888765543331 1255566666542 455666778999998
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
+-.... . ++ ...-+.+....+ ..|.+- ..+ .++++|+.+|.|++
T Consensus 412 Rv~~~~-k---------------------l~---------~~q~kqy~~k~n---Fsc~aT-T~s-G~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 412 RVQGKN-K---------------------LA---------VVQSKQYSTKNN---FSCFAT-TES-GYIVVGSLKGDIRL 455 (644)
T ss_pred cccCcc-e---------------------ee---------eeeccccccccc---cceeee-cCC-ceEEEeecCCcEEe
Confidence 742110 0 00 001112222222 455554 444 48999999999999
Q ss_pred EEecCCeEE-EEeecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 370 WKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 370 wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
||- .+... ..+.+-..+|..+..+.||++|+..+ +..+.+-+
T Consensus 456 Ydr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 456 YDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 997 44433 44677788999999999999887655 44555544
No 382
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.55 E-value=0.0026 Score=59.57 Aligned_cols=105 Identities=5% Similarity=-0.079 Sum_probs=63.9
Q ss_pred eeEEEEecCCCcEEEEecCC------------CeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEE-
Q 012712 345 VKGVNFFGPKCEYVVSGSDC------------GRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKI- 411 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~i- 411 (458)
...-.| +|||+.|++.... +.+++.++..++... ...+.|..+.|||||..||... ++.|.+
T Consensus 399 ~t~PsW-spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 399 LTRPSW-SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCceE-CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 345556 9998877766432 233333443333322 2345799999999999888765 577777
Q ss_pred --ecCCccccc-----ccccccc-cEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 412 --LTPNAADRA-----TLPTNIE-QVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 412 --w~~~~~~~~-----~~~~~~~-~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
-....++.. .+..... .+.++.|..++.++ .+..++.-.+|..
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 444455411 1222233 36889999999865 4455555666664
No 383
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.036 Score=45.41 Aligned_cols=323 Identities=14% Similarity=0.076 Sum_probs=159.1
Q ss_pred eecCC-CceEEEEEecCCCEEEEecCCCeEEEEECCCcc--eeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 57 LDKHR-GCVNTVSFNTDGDILISGSDDRRVILWDWKTER--VKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 57 ~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
+-+|- +.|..+....+-.++..|-.---.-+|+..... ....+ -.-.+-+..+.++ +++...+..+.-+++.
T Consensus 37 ~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~-i~~~~l~~Dv~vs----e~yvyvad~ssGL~Iv 111 (370)
T COG5276 37 YVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSV-INARDLFADVRVS----EEYVYVADWSSGLRIV 111 (370)
T ss_pred EeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEE-EehhhhhheeEec----ccEEEEEcCCCceEEE
Confidence 45665 566666665433333332211122344443211 11111 1234567778885 4577777777889999
Q ss_pred ecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECC
Q 012712 134 QILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
|+.++.......+-.-.+...++..+ | +.++.+..|.-+.+.|+.+.+....-..... ....-..++.+
T Consensus 112 DIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpssP~lagrya~-------~~~d~~~v~IS- 180 (370)
T COG5276 112 DISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-------PGGDTHDVAIS- 180 (370)
T ss_pred eccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCCceeeeeecc-------CCCCceeEEEe-
Confidence 99988765432222122333444443 4 4566666555577889887765433221111 11122455565
Q ss_pred CCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccccc-ccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712 214 RNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDE-QVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (458)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~ 292 (458)
+++-..+..|+-+.+.|+..... |.-+..-. ...+.++..+++..+++...+ .+.+-|....
T Consensus 181 --Gn~AYvA~~d~GL~ivDVSnp~s--------------Pvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~ 243 (370)
T COG5276 181 --GNYAYVAWRDGGLTIVDVSNPHS--------------PVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGP 243 (370)
T ss_pred --cCeEEEEEeCCCeEEEEccCCCC--------------CeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCC
Confidence 46777788899999999987541 11111111 125666777766655554433 3555555542
Q ss_pred CCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeec--CccceeeeeEEEEecCCCcEEEEecCCCeEEEE
Q 012712 293 LGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK--GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIW 370 (458)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iw 370 (458)
+. +..+. ...++..+..+ .-.+++...+..+.-+.+-
T Consensus 244 ss--------------------------------------p~~~gsyet~~p~~~s~v---~Vs~~~~Yvadga~gl~~i 282 (370)
T COG5276 244 SS--------------------------------------PTVFGSYETSNPVSISTV---PVSGEYAYVADGAKGLPII 282 (370)
T ss_pred CC--------------------------------------ceEeeccccCCcccccce---ecccceeeeeccccCceeE
Confidence 21 11111 11111112222 2345566666556556666
Q ss_pred EecCCe---EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-ccccccccEEEEEEecCCcEEEeeec
Q 012712 371 KKKGGE---LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQVCFSIYSADYWWSKSQNF 446 (458)
Q Consensus 371 d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~ 446 (458)
|+++.. ....+......-..+.. -+.++..+..+ ...+-+....+.. ...+....+.+.+.+-+.+.+.+...
T Consensus 283 disnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 283 DISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred eccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence 654321 11111111111222222 22333333333 3333333332222 22222333556666666778888899
Q ss_pred CCceEEEEEe
Q 012712 447 SCSILLFEWL 456 (458)
Q Consensus 447 d~~i~~w~~~ 456 (458)
++.+.+||++
T Consensus 360 ~~gl~i~~~~ 369 (370)
T COG5276 360 NGGLSIIEYL 369 (370)
T ss_pred CCCEEEEEec
Confidence 9999999986
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.035 Score=45.24 Aligned_cols=247 Identities=12% Similarity=0.087 Sum_probs=124.3
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCc-EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----CeEEEEe
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQ-VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GLVQHFD 179 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~-i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd 179 (458)
.-..++|+|. -...++.+-.-|+ ..++|....+.+....-.......-.=.|+|+| .+|++.-.| |.|-+||
T Consensus 69 R~Hgi~~~p~-~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 69 RGHGIAFHPA-LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred ccCCeecCCC-CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEe
Confidence 3446777772 3344556655555 457888777665543222111122234689999 566655433 7899999
Q ss_pred CCCCC-ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC------------------CCeEEEEecCCCccCC
Q 012712 180 LRTGA-ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS------------------DEYTRLYDIRKYKWDG 240 (458)
Q Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~ 240 (458)
.+.+- .+..+.. +......+.+.+| +..++.+.. .-.+.+.|..+++++.
T Consensus 147 ~r~~fqrvgE~~t----------~GiGpHev~lm~D-GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 147 AREGFQRVGEFST----------HGIGPHEVTLMAD-GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred cccccceeccccc----------CCcCcceeEEecC-CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 88442 1222221 2334567888898 566665432 1123344444444433
Q ss_pred CccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEec-CC----cEEEEEccCC-CCCCCCCCCCccccccccccCC
Q 012712 241 STDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYN-DE----FIYLFTQDMG-LGPNPPPSSPVSTRSEASEMGS 314 (458)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~----~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 314 (458)
+..+. ...+...|..++..+||+.++.+. .+ .--+.-...+ +....+.
T Consensus 216 kh~Lp-----------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~--------------- 269 (366)
T COG3490 216 KHTLP-----------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD--------------- 269 (366)
T ss_pred hccCc-----------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccC---------------
Confidence 22111 012345688888888888776553 11 1111111111 0000000
Q ss_pred CCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712 315 DHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 393 (458)
..........+ .|-+++. ..+..+++..+ ..+...+||..+|..+..-.-- ....++
T Consensus 270 ----------------~pee~~~~~an--YigsiA~-n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva- 327 (366)
T COG3490 270 ----------------LPEEQTAAFAN--YIGSIAA-NRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA- 327 (366)
T ss_pred ----------------CCHHHHHHHHh--hhhheee-cccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce-
Confidence 00011111111 2556666 44444555444 4456779999999877543211 122223
Q ss_pred cCCCCeEEEeecCCcEEEecC
Q 012712 394 HPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 394 s~~~~~l~s~~~d~~i~iw~~ 414 (458)
+...-++..+.+|.+.+++-
T Consensus 328 -~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 328 -AAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred -eccCceEEecCCceEEeccc
Confidence 23344556667889988853
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.039 Score=45.34 Aligned_cols=145 Identities=12% Similarity=0.105 Sum_probs=84.5
Q ss_pred EEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEE
Q 012712 130 VRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAI 209 (458)
Q Consensus 130 i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 209 (458)
..+|...-.-.+..+.+.+-...+.++.|+|+.+ .|++......-.++=..+|+.+..+...... ....+
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~---------DpE~I 134 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFS---------DPETI 134 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEEecccccC---------ChhHe
Confidence 4444443322333333555666799999999994 5566665566666656677777766544321 23456
Q ss_pred EECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCC-cEEEEE
Q 012712 210 AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDE-FIYLFT 288 (458)
Q Consensus 210 ~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~i~i~~ 288 (458)
.+... +.++++--.++.+.++.+......-.... .... .......+.....++|+|....|...-+. -+.||.
T Consensus 135 eyig~-n~fvi~dER~~~l~~~~vd~~t~~~~~~~----~~i~-L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~ 208 (316)
T COG3204 135 EYIGG-NQFVIVDERDRALYLFTVDADTTVISAKV----QKIP-LGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE 208 (316)
T ss_pred EEecC-CEEEEEehhcceEEEEEEcCCccEEeccc----eEEe-ccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence 66664 56666667788888887765532111000 0001 11122225678899999998877777654 355655
Q ss_pred cc
Q 012712 289 QD 290 (458)
Q Consensus 289 ~~ 290 (458)
..
T Consensus 209 ~~ 210 (316)
T COG3204 209 VT 210 (316)
T ss_pred Ee
Confidence 54
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.046 Score=51.49 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=88.1
Q ss_pred ecCCCEEEEecCC------CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC-C-----cEEEeeccc
Q 012712 70 NTDGDILISGSDD------RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD-G-----QVRHAQILE 137 (458)
Q Consensus 70 s~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d-g-----~i~vw~~~~ 137 (458)
+..+.+++.||.+ ..+..+|..+++............-.+++.. ++...++||.| | .+..||...
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE---CCEEEEEccccCCCcccceEEEecCCC
Confidence 3346677778776 4688899887754332222233334555555 67888999988 3 466788777
Q ss_pred ccceeeeeccccccceEEEEEcCCCCeEEEEecCCC-----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG-----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
++......+...........+ +| .+.+.|+.|| ++..||.++.+-...-.... .........+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l--~g-~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--------~r~~~gv~~~- 426 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL--DG-KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--------RRSGHGVAVL- 426 (571)
T ss_pred CceeccCCccCccccceeEEE--CC-EEEEEeccccccccccEEEecCCCCcccccCCCCc--------ceeeeEEEEE-
Confidence 765443222222222221222 34 7888899886 47788877665432221100 0111222233
Q ss_pred CCCCcEEEEecCCC------eEEEEecCCCccCCC
Q 012712 213 PRNANLFAVAGSDE------YTRLYDIRKYKWDGS 241 (458)
Q Consensus 213 p~~~~~l~~~~~dg------~i~i~d~~~~~~~~~ 241 (458)
++.+.++|+.++ .+..||..+++....
T Consensus 427 --~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 427 --GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred --CCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 367888888554 578899988876443
No 387
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.48 E-value=0.063 Score=47.11 Aligned_cols=58 Identities=12% Similarity=-0.067 Sum_probs=30.2
Q ss_pred ceeeEEEecCCCCeEEEee-cCCcEEEecCCccccccccc--------------------ccccEEEEEEecCCcEEEe
Q 012712 386 HVVNCIEPHPHSTVLASSG-IESDIKILTPNAADRATLPT--------------------NIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 386 ~~v~~~~~s~~~~~l~s~~-~d~~i~iw~~~~~~~~~~~~--------------------~~~~v~~~~~s~d~~~l~s 443 (458)
.-|+.+..|.|.++|.... .+|.|+.||+......++.+ -.+...-+..|.||+.|..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 3479999999999887655 48999999998753322211 1122466788999977643
No 388
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.45 E-value=0.086 Score=48.06 Aligned_cols=224 Identities=12% Similarity=0.123 Sum_probs=113.1
Q ss_pred ceEEEEEcCCCCeEEEEecCCC----eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecC---
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDG----LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGS--- 224 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--- 224 (458)
.+....++|++..++++.+..| .++++|+++++.+...- .......+.|.+++..++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-----------~~~~~~~~~W~~d~~~~~y~~~~~~~ 193 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-----------ENPKFSSVSWSDDGKGFFYTRFDEDQ 193 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-----------EEEESEEEEECTTSSEEEEEECSTTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-----------cccccceEEEeCCCCEEEEEEeCccc
Confidence 3446789999966666655555 49999999996654321 11122349999985445555432
Q ss_pred -------CCeEEEEecCCCccCCCccCCCCCCCcCCCccccccc-cc-eeEEEeCCCCcEEEEec-C----CcEEEEEcc
Q 012712 225 -------DEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VG-ITGLAFSDQSELLVSYN-D----EFIYLFTQD 290 (458)
Q Consensus 225 -------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-i~~~~~~~~~~~l~~~~-~----~~i~i~~~~ 290 (458)
...|+.|.+.+...... .+..... .. ...+..++++++|+... . ..+++.++.
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~-------------lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDE-------------LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-E-------------EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred ccccCCCCcEEEEEECCCChHhCe-------------eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 23477788776542211 1222222 22 56788999999877543 2 237777776
Q ss_pred CCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEec---CCCeE
Q 012712 291 MGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGS---DCGRI 367 (458)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~---~dg~i 367 (458)
..... ......+...... ....+.. ..+.+++... .++.|
T Consensus 261 ~~~~~----------------------------------~~~~~~l~~~~~~-~~~~v~~--~~~~~yi~Tn~~a~~~~l 303 (414)
T PF02897_consen 261 DGGSP----------------------------------DAKPKLLSPREDG-VEYYVDH--HGDRLYILTNDDAPNGRL 303 (414)
T ss_dssp CTTTS----------------------------------S-SEEEEEESSSS--EEEEEE--ETTEEEEEE-TT-TT-EE
T ss_pred ccCCC----------------------------------cCCcEEEeCCCCc-eEEEEEc--cCCEEEEeeCCCCCCcEE
Confidence 53100 0112222222211 1122222 2444444332 34677
Q ss_pred EEEEecCCeE---EEEeecCCc--eeeEEEecCCCCeEE-EeecCC--cEEEecCC-ccccccccc-ccccEEEEEEecC
Q 012712 368 FIWKKKGGEL---IRVIEADRH--VVNCIEPHPHSTVLA-SSGIES--DIKILTPN-AADRATLPT-NIEQVCFSIYSAD 437 (458)
Q Consensus 368 ~iwd~~~~~~---~~~~~~~~~--~v~~~~~s~~~~~l~-s~~~d~--~i~iw~~~-~~~~~~~~~-~~~~v~~~~~s~d 437 (458)
...++..... ...+..+.. .+..+.. .+.+|+ ..-.++ .|+++++. +.....+.. ..+.|..+...++
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp EEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT
T ss_pred EEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCC
Confidence 7777776652 235555554 4555544 444444 444443 68889998 554433222 2334566665566
Q ss_pred C
Q 012712 438 Y 438 (458)
Q Consensus 438 ~ 438 (458)
+
T Consensus 382 ~ 382 (414)
T PF02897_consen 382 S 382 (414)
T ss_dssp -
T ss_pred C
Confidence 6
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.44 E-value=0.086 Score=47.81 Aligned_cols=156 Identities=11% Similarity=0.107 Sum_probs=83.2
Q ss_pred CceEEEEEecCCCEEE-Eec--CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCC--CCeEEEEEcCCCcEEEeecc
Q 012712 62 GCVNTVSFNTDGDILI-SGS--DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFT--DDRSIVTCAADGQVRHAQIL 136 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~-s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~s~~~dg~i~vw~~~ 136 (458)
.+|..++|. ||+.++ |.= .+|.+++=| ...+ +.-+.|..+.|.|.. +...|++......|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi-----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI-----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe-----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578899997 565444 321 123222211 1222 333568999999931 23345555556889999986
Q ss_pred cc-----cceeee--ecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEE
Q 012712 137 ER-----GGVETK--LLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNA 208 (458)
Q Consensus 137 ~~-----~~~~~~--~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 208 (458)
.. +....+ .+. ...---..+.|+|... +|+.-.....-.+++++.....-..... ..+.|.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVkaDi~---------~~G~IhC 160 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVKADIK---------TSGLIHC 160 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEEEecc---------CCceEEE
Confidence 22 211111 010 0111124678999884 4444443333345565544332222211 4457999
Q ss_pred EEECCCCCcEEEEecCCCeEEEEecCCC
Q 012712 209 IAIDPRNANLFAVAGSDEYTRLYDIRKY 236 (458)
Q Consensus 209 ~~~~p~~~~~l~~~~~dg~i~i~d~~~~ 236 (458)
.+|.+||.+++++.+..=.-++||-...
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 9999986555555555555678886554
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.44 E-value=0.015 Score=54.12 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred EEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC
Q 012712 49 LRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG 128 (458)
Q Consensus 49 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg 128 (458)
..+....++...-....-+.-|.-++..++-+....+.|||...+.......-...+.|.++.|...++++.+++.|...
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 34455555655555666666666565555555556899999988875444322457899999998777999999999999
Q ss_pred cEEEeecc-----ccc----ceeeeeccccc-cceEEEEEcCCCCeEEEEecCCCeEEEEeC
Q 012712 129 QVRHAQIL-----ERG----GVETKLLGKHQ-GRAHKLAIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 129 ~i~vw~~~-----~~~----~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
.|.++.-. ... .+....+..|+ .+|.+..|.++| .+++.++ +.+.++|-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence 99988532 111 12223344555 689999999999 5444333 56788864
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.40 E-value=0.079 Score=46.52 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=95.0
Q ss_pred CCCeEEEee-CCCcEEEEEccccccccccccccccccccceEEeeeeeEeec---CC----CceEEEEEecCCCEEEEec
Q 012712 9 NNKRARTSV-DKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDK---HR----GCVNTVSFNTDGDILISGS 80 (458)
Q Consensus 9 ~~~~l~~~~-~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~~~~s~~~~~l~s~~ 80 (458)
..++|+..+ ..+.|.|.|+.+.-.-.+ +.+.++. +. ..-..+.--|+|+.++|+=
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~-----------------l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPR-----------------LHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-E-----------------EEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCc-----------------eEeeeCHHHHHhhcCCCCCceeeecCCccEEEEec
Confidence 456666655 788899999985432221 1122221 11 1111222346788887742
Q ss_pred ------CCCeEEEEECCCcceeeeeccC--CCcceeEEEEccCCCCeEEEEEcC--------------------CCcEEE
Q 012712 81 ------DDRRVILWDWKTERVKLSFHSG--HNDNVFQAKIMPFTDDRSIVTCAA--------------------DGQVRH 132 (458)
Q Consensus 81 ------~d~~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~s~~~--------------------dg~i~v 132 (458)
.-|-+.+.|-++.+........ ...--+..-|.| ..+.++|... ...+.+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp--r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~v 226 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP--RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHV 226 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET--TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC--CCCEEEEeccCChhhcccCCChhHhhcccccCeEEE
Confidence 2356888887777766555332 223346677778 7777777542 357999
Q ss_pred eecccccceeeeeccccccceEEEEEc--CCCCeEEEEecCCCeEEEEeC-CCCCc--cceeeecccC--CC--Cc----
Q 012712 133 AQILERGGVETKLLGKHQGRAHKLAIE--PGSPHVFYTCGEDGLVQHFDL-RTGAA--TELFTCRPID--DR--RN---- 199 (458)
Q Consensus 133 w~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~s~~~dg~i~iwd~-~~~~~--~~~~~~~~~~--~~--~~---- 199 (458)
||+.+.+.++...+.........+.|. |+...-++.+.-.++|..|-- +.++- .+.+...... .. ..
T Consensus 227 WD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 227 WDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp EETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred EECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 999999888876665444445566664 555455565555666666643 33321 1122211110 00 00
Q ss_pred -ceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 200 -YMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 200 -~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
-.-..-++.+.+|.|+..+.+++-..|.|+.||+....
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 00123478899999865555667789999999998653
No 392
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0044 Score=54.69 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=97.9
Q ss_pred CCeEEE-EEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCe------EEEEecCCCeEEEEeCCCCCcccee
Q 012712 117 DDRSIV-TCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPH------VFYTCGEDGLVQHFDLRTGAATELF 189 (458)
Q Consensus 117 ~~~~l~-s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~l~s~~~dg~i~iwd~~~~~~~~~~ 189 (458)
+.++|+ ++.....++-.|++.++.+.. ..-+.. |+-+.+.|+... .-+.|-.|..|.-||++-...- .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeE--Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEE--WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeE--eeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence 444444 444456677788888887765 333433 677777776421 1234566788999998843321 11
Q ss_pred eecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEe
Q 012712 190 TCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAF 269 (458)
Q Consensus 190 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 269 (458)
...+. ..........|.+-..+ .++++|+.+|.|++||- .+.. .+..+++-..+|..+..
T Consensus 420 ~~~q~---kqy~~k~nFsc~aTT~s--G~IvvgS~~GdIRLYdr-i~~~--------------AKTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 420 AVVQS---KQYSTKNNFSCFATTES--GYIVVGSLKGDIRLYDR-IGRR--------------AKTALPGLGDAIKHVDV 479 (644)
T ss_pred eeeec---cccccccccceeeecCC--ceEEEeecCCcEEeehh-hhhh--------------hhhcccccCCceeeEEe
Confidence 11111 01112335667776665 48999999999999997 3332 23345556678999999
Q ss_pred CCCCcEEEEecCCcEEEEEccC
Q 012712 270 SDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 270 ~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
+.+|++|++.++..+.+.++.-
T Consensus 480 tadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 480 TADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred eccCcEEEEecccEEEEEEEec
Confidence 9999999999999888887654
No 393
>PHA02713 hypothetical protein; Provisional
Probab=97.36 E-value=0.024 Score=53.43 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=43.3
Q ss_pred CCcEEEEecCC------CeEEEEEecC---CeEEEEeecCCceeeEEEecCCCCeEEEeecCC--cEEEecCCccccccc
Q 012712 354 KCEYVVSGSDC------GRIFIWKKKG---GELIRVIEADRHVVNCIEPHPHSTVLASSGIES--DIKILTPNAADRATL 422 (458)
Q Consensus 354 ~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~--~i~iw~~~~~~~~~~ 422 (458)
+++..+.|+.+ ..+..||..+ ++.+..+.........+++ ++++.++||.|+ .+..||+.+.+...+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 67777777654 2467898875 3444444433333333333 788999999888 778888888776544
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.34 E-value=0.18 Score=49.15 Aligned_cols=215 Identities=13% Similarity=0.042 Sum_probs=116.0
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe----------------cCC
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----------------TDG 73 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------~~~ 73 (458)
+..|+.++.++.|.-.|..||+.+-+......... . ..| ...+.+++. .++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~--~----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEA--G----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccc--c----------ccc-ccccceEEecCCcccccccccccccccC
Confidence 45688888899999999999998865221110000 0 000 000111111 134
Q ss_pred CEEEEecCCCeEEEEECCCcceeeeeccCCCccee-------------EEEEccCCCCeEEEEEcC----------CCcE
Q 012712 74 DILISGSDDRRVILWDWKTERVKLSFHSGHNDNVF-------------QAKIMPFTDDRSIVTCAA----------DGQV 130 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~~l~s~~~----------dg~i 130 (458)
..++.++.|+.+.-.|.++|+.+..+- ..+.|. .+.-.|.-.+..++.++. +|.|
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg--~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG--NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec--CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 578888889999999999999887652 222210 111112112335555532 5889
Q ss_pred EEeecccccceeeeecccc-------c--------cce-EEEEEcCCCCeEEEEec------------------CCCeEE
Q 012712 131 RHAQILERGGVETKLLGKH-------Q--------GRA-HKLAIEPGSPHVFYTCG------------------EDGLVQ 176 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~-------~--------~~v-~~~~~~~~~~~~l~s~~------------------~dg~i~ 176 (458)
+-+|+++++.......... . ..+ ..++++|.. .+++... ..+.|.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~-glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKL-GLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCC-CeEEEeCCCccccccCCccccCcccccceEE
Confidence 9999999987654322100 0 011 233444544 2222211 235677
Q ss_pred EEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC---cEEEEecCCCeEEEEecCCCccCCC
Q 012712 177 HFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA---NLFAVAGSDEYTRLYDIRKYKWDGS 241 (458)
Q Consensus 177 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (458)
-.|+++++....++....... .........-+.+...++ ..++.++.+|.++++|.++++.+..
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~W-D~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLW-DMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEeCCCCceEEEecccCCccc-cccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 778888888776654221110 000111111122222123 3788999999999999999986544
No 395
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.33 E-value=0.093 Score=45.87 Aligned_cols=66 Identities=9% Similarity=-0.154 Sum_probs=40.0
Q ss_pred ceeeEEEecC-------CCCeEEEeecCCcEEEecCCcccc----ccc-ccccccEEEEEEecCCcEEEeeecCCceE
Q 012712 386 HVVNCIEPHP-------HSTVLASSGIESDIKILTPNAADR----ATL-PTNIEQVCFSIYSADYWWSKSQNFSCSIL 451 (458)
Q Consensus 386 ~~v~~~~~s~-------~~~~l~s~~~d~~i~iw~~~~~~~----~~~-~~~~~~v~~~~~s~d~~~l~s~~~d~~i~ 451 (458)
..+..+.|.. .|.++++.-..+.|....++.+.. ..+ .....++..+++.|||.+.++-..+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4566777654 344566555566777777663321 122 23444799999999998888877888763
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.32 E-value=0.089 Score=49.59 Aligned_cols=234 Identities=15% Similarity=0.190 Sum_probs=125.3
Q ss_pred CCeEEEEEcCCC------cEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCC
Q 012712 117 DDRSIVTCAADG------QVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGA 184 (458)
Q Consensus 117 ~~~~l~s~~~dg------~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~ 184 (458)
.+.+++.||.++ .+..+|..++.......+. ....-.+++... + .+.++|+.| ..+..||.++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc
Confidence 456677777663 5778888777554433333 222234445444 3 688999988 357888888776
Q ss_pred ccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCe-----EEEEecCCCccCCCccCCCCCCCcCCCccccc
Q 012712 185 ATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEY-----TRLYDIRKYKWDGSTDFGQPADYFCPPNLIGD 259 (458)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (458)
-...- +....+ . .. +++.. ++.+.++|+.||. +..||..+.+...... +..
T Consensus 361 W~~~a---~M~~~R---~--~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-------------m~~ 416 (571)
T KOG4441|consen 361 WTPVA---PMNTKR---S--DF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-------------MLT 416 (571)
T ss_pred eeccC---CccCcc---c--cc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-------------CCc
Confidence 33311 111100 1 11 12222 4678899998864 7788888876532211 100
Q ss_pred cccceeEEEeCCCCcEEEEec-CC------cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccC
Q 012712 260 EQVGITGLAFSDQSELLVSYN-DE------FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIA 332 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~-~~------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (458)
...... .-.-+|++.+.|+ ++ .+..||..++.-..
T Consensus 417 ~r~~~g--v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~------------------------------------ 458 (571)
T KOG4441|consen 417 RRSGHG--VAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL------------------------------------ 458 (571)
T ss_pred ceeeeE--EEEECCEEEEEcCcCCCccccceEEEEcCCCCceee------------------------------------
Confidence 011111 1223566666665 22 37788877643211
Q ss_pred ceeecCccceeeeeEEEEecCCCcEEEEecCCC-----eEEEEEecCCeE--EEEeecCCceeeEEEecCCCCeEEEeec
Q 012712 333 PQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCG-----RIFIWKKKGGEL--IRVIEADRHVVNCIEPHPHSTVLASSGI 405 (458)
Q Consensus 333 ~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 405 (458)
...+..... -..++ .-++.+.+.|+.|+ +|..||..+.+- +..+......+....+ +++..++|+.
T Consensus 459 ~~~M~~~R~---~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~ 531 (571)
T KOG4441|consen 459 IAPMNTRRS---GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGF 531 (571)
T ss_pred cCCcccccc---cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecc
Confidence 111111111 12233 23778888888876 367788765433 2223322222222333 6677888888
Q ss_pred CC-----cEEEecCCccccccc
Q 012712 406 ES-----DIKILTPNAADRATL 422 (458)
Q Consensus 406 d~-----~i~iw~~~~~~~~~~ 422 (458)
|| +|..||..+.+....
T Consensus 532 ~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cCccccceeEEcCCCCCceeeC
Confidence 76 577888877655433
No 397
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.054 Score=51.11 Aligned_cols=95 Identities=15% Similarity=0.227 Sum_probs=48.0
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccceeeeeccccccceEEEE
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGGVETKLLGKHQGRAHKLA 157 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~~~~~~~~~~~~~v~~~~ 157 (458)
.+..||..+++-...-.......-.+++. - ++..++.||.+ ..+..||..++.......+....... +++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-V--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-E--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE
Confidence 56778887765321110011111122333 2 67788888754 24667887766543222122111122 222
Q ss_pred EcCCCCeEEEEecCCC-----eEEEEeCCCCC
Q 012712 158 IEPGSPHVFYTCGEDG-----LVQHFDLRTGA 184 (458)
Q Consensus 158 ~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 184 (458)
. -++ .+.+.||.++ .+..||..+.+
T Consensus 349 ~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 349 V-IDD-TIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred E-ECC-EEEEECCcCCCCCCceEEEEECCCCe
Confidence 2 234 6778888754 47889987764
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.19 E-value=0.0017 Score=37.15 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcce
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERV 95 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~ 95 (458)
...|.+++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 4443
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.03 E-value=0.0022 Score=36.69 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=28.3
Q ss_pred CceeeEEEecCCCCeEEEeecCCcEEEecCC
Q 012712 385 RHVVNCIEPHPHSTVLASSGIESDIKILTPN 415 (458)
Q Consensus 385 ~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~ 415 (458)
...|..++|+|...+||.+..+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3568999999999999999999999999983
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.90 E-value=0.0025 Score=49.85 Aligned_cols=101 Identities=7% Similarity=0.010 Sum_probs=67.1
Q ss_pred CcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeE-EEecCCCCeEEEeecCCcEEEecCCcccccccccccc--cEE
Q 012712 355 CEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNC-IEPHPHSTVLASSGIESDIKILTPNAADRATLPTNIE--QVC 430 (458)
Q Consensus 355 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~--~v~ 430 (458)
+.-+++|+.+|.|++|+.... ........-...|.+ +.--.++.+..+++.||.|+.|++..++.....++.. ++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457889999999999987521 111111111222322 2223455578889999999999999888775554443 566
Q ss_pred EEEEecCCcEEEee--ecCCceEEEEE
Q 012712 431 FSIYSADYWWSKSQ--NFSCSILLFEW 455 (458)
Q Consensus 431 ~~~~s~d~~~l~s~--~~d~~i~~w~~ 455 (458)
....+..+++++.+ +.|..++.|+.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcch
Confidence 66667777777777 88888888864
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.87 E-value=0.45 Score=46.04 Aligned_cols=127 Identities=15% Similarity=0.129 Sum_probs=75.4
Q ss_pred CeEEEeeCCCcEEEEEcccccccccccccccccc-ccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEE
Q 012712 11 KRARTSVDKALVDVWLRELGQLSTRNFALRRRAS-EDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWD 89 (458)
Q Consensus 11 ~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd 89 (458)
+-|+.+. |+.+.+||-....+...+.-...... .+...+++.+.....-.-.|..|.++|+|.+||..|..+. .|-.
T Consensus 34 rNLl~~~-d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~ 111 (717)
T PF10168_consen 34 RNLLACR-DGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGV-VVLE 111 (717)
T ss_pred eeeEEEe-CCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcE-EEEE
Confidence 3455555 78999999986554333211111111 1111122222112223457999999999999999988764 4433
Q ss_pred CCC----------cce--eee--------eccCCCcceeEEEEccCC-CCeEEEEEcCCCcEEEeeccccc
Q 012712 90 WKT----------ERV--KLS--------FHSGHNDNVFQAKIMPFT-DDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 90 ~~~----------~~~--~~~--------~~~~~~~~i~~~~~~~~~-~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
+.. +.. ..+ +...+...|..+.|+|.. ++..|+.-..|+.+++||+....
T Consensus 112 LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 112 LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 321 111 111 112345689999999943 35788888889999999997644
No 402
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.0063 Score=47.67 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=62.0
Q ss_pred CCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEE-EEecCCCEEEEecCCCeEEEE
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTV-SFNTDGDILISGSDDRRVILW 88 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~~~d~~i~iw 88 (458)
+.-|++|+.+|.|.+|+...-..+.. ....-...|.++ .--.++.+..+++.|+.|+.|
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD--------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH--------------------hhhcccccceeccccccccceeEEeccCCceeee
Confidence 45588899999999998872111100 011122333332 223355688899999999999
Q ss_pred ECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEE--cCCCcEEEeeccc
Q 012712 89 DWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTC--AADGQVRHAQILE 137 (458)
Q Consensus 89 d~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~--~~dg~i~vw~~~~ 137 (458)
++.-.+.+... ..|. .++.....+. .++.++.+ |.|..++.|++..
T Consensus 130 n~~p~k~~g~~-g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 130 NIKPNKVLGYV-GQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCceeeee-ccccCCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence 99877765554 4555 4444444443 45555555 5566666666544
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.0062 Score=58.54 Aligned_cols=100 Identities=11% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCeEEEEEecCC-eEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecCCccccc-cccccccc---
Q 012712 354 KCEYVVSGSDCGRIFIWKKKGG-ELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRA-TLPTNIEQ--- 428 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~~--- 428 (458)
.+.+++.|+..|.+...|+... .+...=..-.++|++++|+.+|+.++.|-.+|.|.+||...++.. .+..+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557888999999999888442 111111123468999999999999999999999999999997665 33444444
Q ss_pred EEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 429 VCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 429 v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
+..+.+..++..+.++..-|+ +|+.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555556667777778777776 6654
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.68 E-value=0.093 Score=46.75 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=56.4
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEE-EecC-----Ce--EE-EEeec----CCceeeEEEecCCCCeEEEeecC-----
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIW-KKKG-----GE--LI-RVIEA----DRHVVNCIEPHPHSTVLASSGIE----- 406 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iw-d~~~-----~~--~~-~~~~~----~~~~v~~~~~s~~~~~l~s~~~d----- 406 (458)
...+++ .++| +++ +... .|..+ |... ++ .+ ..+.. +......++|.|||.+.++-+..
T Consensus 74 p~Gi~~-~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 74 VTGLAV-AVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred ccceeE-ecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 467777 8888 444 3333 45444 4321 12 11 12222 13457889999999877655521
Q ss_pred --------------CcEEEecCCcccccccccccccEEEEEEecCCcEEEeee
Q 012712 407 --------------SDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQN 445 (458)
Q Consensus 407 --------------~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 445 (458)
|.|.-++..+++...+.........++|+|+|.++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 345555666555444444444467899999998876644
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.55 E-value=0.48 Score=41.51 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=48.4
Q ss_pred CceeecCccceeeeeEEEEecC------CCcEEEEecCCCeEEEEEecCCeEEE---E-eecCCceeeEEEecCCCCeEE
Q 012712 332 APQVYKGHRNCVTVKGVNFFGP------KCEYVVSGSDCGRIFIWKKKGGELIR---V-IEADRHVVNCIEPHPHSTVLA 401 (458)
Q Consensus 332 ~~~~~~~~~~~~~i~~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~l~ 401 (458)
+...+..|.. +..+.|+.- .|+++++.-..+.|....++.+..+. . +......+..+++.|||.+++
T Consensus 245 P~~~~~~~~a---p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 245 PVFAYPPHSA---PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp -SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred cceeecCccc---cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 4445555544 566666321 56677777667889988887554332 2 223444799999999999998
Q ss_pred EeecCCcEE
Q 012712 402 SSGIESDIK 410 (458)
Q Consensus 402 s~~~d~~i~ 410 (458)
+.+.+|.|.
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 888888774
No 406
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.016 Score=55.83 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc
Q 012712 72 DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG 151 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 151 (458)
.+..++.|+..|.+-..|....-.....-..-.++|++++|+. +|..++.|-.+|.|.+||+..++.... +..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k~l~~--i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAKILKV--ITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCcceee--eeecCC
Confidence 4567888888899988887653221111123467999999999 999999999999999999988877665 444544
Q ss_pred ceEEE---EEcCCCCeEEEEecCCCeEEEEeC
Q 012712 152 RAHKL---AIEPGSPHVFYTCGEDGLVQHFDL 180 (458)
Q Consensus 152 ~v~~~---~~~~~~~~~l~s~~~dg~i~iwd~ 180 (458)
+.+.+ .+..++ ..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 44433 344445 46788877776 5554
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.47 E-value=0.32 Score=38.66 Aligned_cols=91 Identities=8% Similarity=0.101 Sum_probs=61.2
Q ss_pred eEEEEecCCCcEEE-EecCCCeEEEEE--ecCCeE-----EEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 346 KGVNFFGPKCEYVV-SGSDCGRIFIWK--KKGGEL-----IRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 346 ~~~~~~s~~~~~l~-~~~~dg~i~iwd--~~~~~~-----~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
+.++| +.+.+.++ +-+.+-+|.-|| ..+|.. +..++. .....-.+++..+|++.+++-..++|...|
T Consensus 161 Ngl~W-d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAW-DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccc-cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 56777 77666554 455667787777 555532 233322 112234566677888888888889999999
Q ss_pred CCccccc-ccccccccEEEEEEecC
Q 012712 414 PNAADRA-TLPTNIEQVCFSIYSAD 437 (458)
Q Consensus 414 ~~~~~~~-~~~~~~~~v~~~~~s~d 437 (458)
+.+++.+ ++.-...+|++++|---
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999776 44445677999999754
No 408
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.42 E-value=0.65 Score=41.53 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=51.0
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCce-eeEEEecCC-----------------CC-eEEEeec
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHV-VNCIEPHPH-----------------ST-VLASSGI 405 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~-----------------~~-~l~s~~~ 405 (458)
+.+++. +|++++.|+...=|+|.++|+.++..++.+++..+. +.-+..... .. +++-+-.
T Consensus 310 ~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 310 GESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred EEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 778887 999999888877799999999999888888775532 111111111 11 2334566
Q ss_pred CCcEEEecCCccccc
Q 012712 406 ESDIKILTPNAADRA 420 (458)
Q Consensus 406 d~~i~iw~~~~~~~~ 420 (458)
-|.|.||++..+.++
T Consensus 389 Rg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 389 RGILEVWSMRQGPRV 403 (415)
T ss_pred CCeEEEEecCCCCEE
Confidence 788889988766543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.093 Score=51.35 Aligned_cols=153 Identities=8% Similarity=-0.040 Sum_probs=90.3
Q ss_pred cccceeEEEeCCCCcEEEEec--CC-cEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceee
Q 012712 260 EQVGITGLAFSDQSELLVSYN--DE-FIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVY 336 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~--~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (458)
...++..+...+|+.+.++.. +| .|+.||+..-........ ......-
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~-----------------------------~pl~~s~ 149 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETT-----------------------------VPLKNSA 149 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhc-----------------------------ccccccc
Confidence 345677788888877655433 44 589999876322111000 0000000
Q ss_pred cCccceeeeeEEEEecCCCc-EEEEecCCCeEEEEEecCCeE-EEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 337 KGHRNCVTVKGVNFFGPKCE-YVVSGSDCGRIFIWKKKGGEL-IRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 337 ~~~~~~~~i~~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
..........++.| .|.=. ..+....|+.|++..+..... +..+ .-....++++|+|.|+.++.|-..|++.-|..
T Consensus 150 ts~ek~vf~~~~~w-nP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 150 TSFEKPVFQLKNVW-NPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred chhccccccccccc-cCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 01111112445555 44321 234556788888877643322 2222 23456899999999999999999999999987
Q ss_pred Ccccccccc----cccccEEEEEEecCCcEEEe
Q 012712 415 NAADRATLP----TNIEQVCFSIYSADYWWSKS 443 (458)
Q Consensus 415 ~~~~~~~~~----~~~~~v~~~~~s~d~~~l~s 443 (458)
.-.....+. ....+|.+++|-....||++
T Consensus 228 ~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 228 SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 755332221 12467999999988888775
No 410
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.27 E-value=0.55 Score=39.23 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=86.1
Q ss_pred ceEEEEEecCCCEEEEec---CCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEee-cccc
Q 012712 63 CVNTVSFNTDGDILISGS---DDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQ-ILER 138 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~-~~~~ 138 (458)
.+.+.+++++++.+|... ....+.++... ........+ ..+....|++ ++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccC--CCCEEEEEcCCCceEEEEecCCC
Confidence 688999999998777655 33455555543 333333222 3788889999 877776666666667764 2333
Q ss_pred cceeee-eccccccceEEEEEcCCCCeEEEEe--cCCCeEEEEeCCCCCcc--ceeeecccCCCCcceeecceEEEEECC
Q 012712 139 GGVETK-LLGKHQGRAHKLAIEPGSPHVFYTC--GEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYMTVVNLNAIAIDP 213 (458)
Q Consensus 139 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p 213 (458)
...... ....-...|..+.++|||.++.+.. ..++.|.+--+.....- ..+... ..... .....+..++|.+
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~-~~~~~--~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGP-RRVAP--PLLSDVTDVAWSD 175 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccc-eEecc--cccCcceeeeecC
Confidence 322211 1111112899999999996655444 23466766654322111 111100 00000 0234688999999
Q ss_pred CCCcEEEEecCCC
Q 012712 214 RNANLFAVAGSDE 226 (458)
Q Consensus 214 ~~~~~l~~~~~dg 226 (458)
+ ..+++.+...+
T Consensus 176 ~-~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 D-STLVVLGRSAG 187 (253)
T ss_pred C-CEEEEEeCCCC
Confidence 7 45555554433
No 411
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.26 Score=38.38 Aligned_cols=135 Identities=12% Similarity=0.122 Sum_probs=75.9
Q ss_pred cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccc---eEEE
Q 012712 80 SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGR---AHKL 156 (458)
Q Consensus 80 ~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~---v~~~ 156 (458)
-.+|.-..+|.++.+++.++ ...+.=+.++. |+..|+.+....+++.-|.++-....+........+ ++.+
T Consensus 108 w~egvaf~~d~~t~~~lg~~--~y~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNEL 181 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRF--SYEGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNEL 181 (262)
T ss_pred eccceeEEEChHHhhhhccc--ccCCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccce
Confidence 35677888999888887776 34455566665 566677776666777777665443332222222222 3334
Q ss_pred EEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcc--eeecceEEEEECCCCCcEEEEe
Q 012712 157 AIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNY--MTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
.|- +| .+.+-.-.+..|...|.++|+.+..+........-.. .+..-.+.+++.|+.++++++|
T Consensus 182 E~V-dG-~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 182 EWV-DG-ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eee-cc-EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443 23 3444444445566667777776665544332221110 1233567899999855666665
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.23 E-value=0.46 Score=37.86 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=40.5
Q ss_pred EEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEec
Q 012712 347 GVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPH 394 (458)
Q Consensus 347 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 394 (458)
.++. +.+|++.++.-..++|...|..+|+.+.+++-....|++++|-
T Consensus 216 Gm~I-D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 216 GMTI-DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cceE-ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 3444 7788888888888999999999999999999888899999995
No 413
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.23 Score=43.64 Aligned_cols=157 Identities=14% Similarity=0.210 Sum_probs=97.9
Q ss_pred CCCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCC
Q 012712 3 DASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDD 82 (458)
Q Consensus 3 ~~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 82 (458)
.+||...+++|++-. .|.+.=|-+..-. +|.... .-..-+++|.++.||+|.+.||.--.+
T Consensus 27 gvFfDDaNkqlfavr-Sggatgvvvkgpn-------------dDVpiS-----fdm~d~G~I~SIkFSlDnkilAVQR~~ 87 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVR-SGGATGVVVKGPN-------------DDVPIS-----FDMDDKGEIKSIKFSLDNKILAVQRTS 87 (657)
T ss_pred ceeeccCcceEEEEe-cCCeeEEEEeCCC-------------CCCCce-----eeecCCCceeEEEeccCcceEEEEecC
Confidence 467777777766655 3445566655111 111111 112356799999999999999999999
Q ss_pred CeEEEEECCCcceeeeec---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEc
Q 012712 83 RRVILWDWKTERVKLSFH---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIE 159 (458)
Q Consensus 83 ~~i~iwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (458)
++|.+++....+...... +..+..|....|+. ..-+|.-...| +-+|.+...... .+..+.|...|+-..|.
T Consensus 88 ~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~pekrs-lRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 88 KTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVLPEKRS-LRLVKSHNLNVNWYMYC 162 (657)
T ss_pred ceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEchhhhh-hhhhhhcccCccEEEEc
Confidence 999999985544433321 23345689999984 46666665544 667765443322 12366788889999999
Q ss_pred CCCCeEEEEec-CCCeEEEEeCCCC
Q 012712 160 PGSPHVFYTCG-EDGLVQHFDLRTG 183 (458)
Q Consensus 160 ~~~~~~l~s~~-~dg~i~iwd~~~~ 183 (458)
++..-.|++.+ ..+++.=+.++++
T Consensus 163 ~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 163 PETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cccceEeeeccccccccccEEEeec
Confidence 98744444444 3444444444444
No 414
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.16 E-value=0.67 Score=44.18 Aligned_cols=101 Identities=10% Similarity=0.047 Sum_probs=71.1
Q ss_pred CCcEEEEecCCCeEEEEEecC-------C----e---------EEEEeecCCceeeEEEec--CCCCeEEEeecCCcEEE
Q 012712 354 KCEYVVSGSDCGRIFIWKKKG-------G----E---------LIRVIEADRHVVNCIEPH--PHSTVLASSGIESDIKI 411 (458)
Q Consensus 354 ~~~~l~~~~~dg~i~iwd~~~-------~----~---------~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~i~i 411 (458)
+...|+.+.+||.|.+|.+++ . + +-..+. -....++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 456888899999999997631 1 0 111122 23468999998 88889999988888888
Q ss_pred ecCCcc--cccc--cccccccEEEEEEecCC------cEEEeeecCCceEEEEE
Q 012712 412 LTPNAA--DRAT--LPTNIEQVCFSIYSADY------WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 412 w~~~~~--~~~~--~~~~~~~v~~~~~s~d~------~~l~s~~~d~~i~~w~~ 455 (458)
|-.... +... ...+...|.+++|-++. .++++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765542 1111 22355568899987655 38999999999999987
No 415
>PHA03098 kelch-like protein; Provisional
Probab=96.14 E-value=0.66 Score=44.00 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=74.7
Q ss_pred CCCEEEEecCC-----CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcEEEeecccccc
Q 012712 72 DGDILISGSDD-----RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQVRHAQILERGG 140 (458)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i~vw~~~~~~~ 140 (458)
+++..+.||.+ ..+..||..+++-...-...+...-.+++. - ++...+.||.+ ..+..||..+++.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-V--NNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-E--CCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 57777778765 357778877654321110011111112222 2 67777777742 3577888876654
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCC--------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGED--------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
.....+...... .++.. .++ .+++.|+.+ ..+..||..+.+-...-... . .......+.+
T Consensus 419 ~~~~~~p~~r~~-~~~~~-~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~-------~r~~~~~~~~- 486 (534)
T PHA03098 419 SKGSPLPISHYG-GCAIY-HDG-KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-F-------PRINASLCIF- 486 (534)
T ss_pred eecCCCCccccC-ceEEE-ECC-EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-c-------ccccceEEEE-
Confidence 332112111111 12222 234 667777643 23888898876543221110 0 0001122222
Q ss_pred CCCCcEEEEecCC-----CeEEEEecCCCcc
Q 012712 213 PRNANLFAVAGSD-----EYTRLYDIRKYKW 238 (458)
Q Consensus 213 p~~~~~l~~~~~d-----g~i~i~d~~~~~~ 238 (458)
+ +.+++.|+.+ ..+.+||..+.+.
T Consensus 487 -~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 -N-NKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred -C-CEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 3 5677777654 4688888887664
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.13 E-value=0.15 Score=47.85 Aligned_cols=102 Identities=13% Similarity=0.202 Sum_probs=69.7
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEee-cCCceeeEEEec--CCCCeEEEeecCCcEEEecCCc-----c------
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVIE-ADRHVVNCIEPH--PHSTVLASSGIESDIKILTPNA-----A------ 417 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--~~~~~l~s~~~d~~i~iw~~~~-----~------ 417 (458)
+.-++..++-+...++.|||...+....+-. ...+.|.++.|. |+++.+.+.|..+.|.+|.-.. .
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 4455555555555689999998887543332 346789999985 7899999999999999985421 1
Q ss_pred -ccccccccc-ccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 418 -DRATLPTNI-EQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 418 -~~~~~~~~~-~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
+...+..+. .+|.+..|.++|.+++.++ +.+.|++-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 111223333 4688999999998886543 46777763
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.09 E-value=0.69 Score=38.65 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=62.8
Q ss_pred ceEEEEEcCCCCeEEEEec--CCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEE
Q 012712 152 RAHKLAIEPGSPHVFYTCG--EDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTR 229 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 229 (458)
.+.+.++++++..+.+... ....++++. .+....... ....+..-+|+++ +...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-----------~g~~l~~PS~d~~-g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-----------TGGSLTRPSWDPD-GWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-----------cCCccccccccCC-CCEEEEEcCCCceE
Confidence 6888999999954444442 233455544 333332221 1125677889998 55655555555666
Q ss_pred EEe-cCCCccCCCccCCCCCCCcCCCccccccc-cceeEEEeCCCCcEEEEec----CCcEEEEEcc
Q 012712 230 LYD-IRKYKWDGSTDFGQPADYFCPPNLIGDEQ-VGITGLAFSDQSELLVSYN----DEFIYLFTQD 290 (458)
Q Consensus 230 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~----~~~i~i~~~~ 290 (458)
++. ...++... ........ ..|..+.++|||..++... ++.+++--+.
T Consensus 91 ~~~~~~~g~~~~-------------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 91 VVRDSASGTGEP-------------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred EEEecCCCccee-------------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 663 22222110 00111111 2899999999999877655 4466666554
No 418
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.03 E-value=0.032 Score=30.88 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=26.9
Q ss_pred ceEEEEECCCCC--cEEEEecCCCeEEEEecCC
Q 012712 205 NLNAIAIDPRNA--NLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 205 ~v~~~~~~p~~~--~~l~~~~~dg~i~i~d~~~ 235 (458)
.+.++.|+|.++ .+|+.+-..|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998755 6888888899999999995
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.01 E-value=1.2 Score=40.82 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=75.6
Q ss_pred cCCCceEEEEEecCC----CEEEEecCCCeEEEEECCC-----cceeee----eccCCCcceeEEEEccCCCCeEEEEEc
Q 012712 59 KHRGCVNTVSFNTDG----DILISGSDDRRVILWDWKT-----ERVKLS----FHSGHNDNVFQAKIMPFTDDRSIVTCA 125 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~----~~l~s~~~d~~i~iwd~~~-----~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~s~~ 125 (458)
|.-+.|..++|.|-+ ..|+.......|.||.+.. ++.+.. +.....---..+.|+| ....|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEe
Confidence 344569999999953 2344455668899998752 222111 1011111224577999 777776655
Q ss_pred CCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 126 ADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 126 ~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
....-.+.++..........+ ...+.|.|.+|.+||.+++++.+..=.-++||-...
T Consensus 132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 544444566655544333334 355789999999999777777776667789986554
No 420
>PRK10115 protease 2; Provisional
Probab=95.94 E-value=1.8 Score=42.23 Aligned_cols=73 Identities=12% Similarity=0.052 Sum_probs=47.8
Q ss_pred cceeEEEEccCCCCeEEEEEcC-----CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCC-----Ce
Q 012712 105 DNVFQAKIMPFTDDRSIVTCAA-----DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED-----GL 174 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-----g~ 174 (458)
-.+..+.++| |+++|+.+.. ...|++-|+.++..+... +.. .-..++|.+++..++++...+ ..
T Consensus 127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccC---cceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 3567788999 9998886533 235888888877533221 221 114599999986666665432 36
Q ss_pred EEEEeCCCC
Q 012712 175 VQHFDLRTG 183 (458)
Q Consensus 175 i~iwd~~~~ 183 (458)
|+.+++.++
T Consensus 201 v~~h~lgt~ 209 (686)
T PRK10115 201 VWRHTIGTP 209 (686)
T ss_pred EEEEECCCC
Confidence 788888877
No 421
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.18 Score=49.53 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=93.1
Q ss_pred ceeEEEEccCCCCeEEEE--EcCCCcEEEeeccccccee---eeecc------ccccceEEEEEcCCCCeEEEEecCCCe
Q 012712 106 NVFQAKIMPFTDDRSIVT--CAADGQVRHAQILERGGVE---TKLLG------KHQGRAHKLAIEPGSPHVFYTCGEDGL 174 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s--~~~dg~i~vw~~~~~~~~~---~~~~~------~~~~~v~~~~~~~~~~~~l~s~~~dg~ 174 (458)
+|..+...+ |+...+. .+.+-.|..+|+++-.... ...+. .......++.|+|.=+...+.+..|+.
T Consensus 102 pi~~~v~~~--D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFH--DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cceEEEecc--CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 455555555 7554433 3344478889987643221 11122 222345678899876666788888999
Q ss_pred EEEEeCCCCCc-cceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCC
Q 012712 175 VQHFDLRTGAA-TELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCP 253 (458)
Q Consensus 175 i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 253 (458)
|++..+..... +..+. .....++++|+|. |..++.|-.+|++.-|...-...... .++
T Consensus 180 l~V~~~~~~~~~v~s~p-----------~t~~~Tav~WSpr-GKQl~iG~nnGt~vQy~P~leik~~i---------p~P 238 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-----------VTNSQTAVLWSPR-GKQLFIGRNNGTEVQYEPSLEIKSEI---------PEP 238 (1405)
T ss_pred hhhhhhhhhhhhhcccC-----------cccceeeEEeccc-cceeeEecCCCeEEEeecccceeecc---------cCC
Confidence 98887654332 12222 2335799999998 78999999999998887643311100 011
Q ss_pred CccccccccceeEEEeCCCCcEEEEec
Q 012712 254 PNLIGDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 254 ~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
.. .....|.++.|-....++++.+
T Consensus 239 p~---~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 239 PV---EENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred Cc---CCCcceeEEEEecceeEEEEec
Confidence 11 1257899999999988888765
No 422
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.89 E-value=0.054 Score=29.97 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.7
Q ss_pred CceEEEEEecCC---CEEEEecCCCeEEEEECCCc
Q 012712 62 GCVNTVSFNTDG---DILISGSDDRRVILWDWKTE 93 (458)
Q Consensus 62 ~~v~~~~~s~~~---~~l~s~~~d~~i~iwd~~~~ 93 (458)
++|+++.|||+. .+|+.+-..+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 578999999854 58888888899999999853
No 423
>PHA03098 kelch-like protein; Provisional
Probab=95.86 E-value=1.1 Score=42.55 Aligned_cols=189 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred cCCCEEEEecCCC------eEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC-----CcEEEeecccc
Q 012712 71 TDGDILISGSDDR------RVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQILER 138 (458)
Q Consensus 71 ~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~~~~~ 138 (458)
.++..++.||.++ .+..||..+++-...-. ....... +++ .- ++..++.||.+ ..+..||..++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3556677776542 56778877665422110 1011111 222 22 67788888865 34667887766
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCC------CeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEEC
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAID 212 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 212 (458)
.......+...... .+++. -++ .+++.|+.+ ..+..||+.+.+-...-..+ .... . .+++..
T Consensus 369 ~W~~~~~lp~~r~~-~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~------~-~~~~~~ 436 (534)
T PHA03098 369 KWREEPPLIFPRYN-PCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHY------G-GCAIYH 436 (534)
T ss_pred ceeeCCCcCcCCcc-ceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cccc------C-ceEEEE
Confidence 54332112211111 12222 234 677777732 35788898776543221110 0000 1 122222
Q ss_pred CCCCcEEEEecCC--------CeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC---
Q 012712 213 PRNANLFAVAGSD--------EYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND--- 281 (458)
Q Consensus 213 p~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--- 281 (458)
++.+++.|+.+ ..+.+||..+.+........ . .......+.+ ++++++.|+.
T Consensus 437 --~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----------~---~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 437 --DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN----------F---PRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred --CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC----------c---ccccceEEEE--CCEEEEEcCCcCC
Confidence 24666777643 23889999887654321110 0 0111112222 6677776653
Q ss_pred ---CcEEEEEccCC
Q 012712 282 ---EFIYLFTQDMG 292 (458)
Q Consensus 282 ---~~i~i~~~~~~ 292 (458)
+.+..||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 25888887764
No 424
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.79 E-value=0.63 Score=44.35 Aligned_cols=162 Identities=12% Similarity=0.086 Sum_probs=95.5
Q ss_pred CCeEEEeeCCCcEEEEEccccccccc-------cccccccccccceEEeeeeeEeecCCCceEEEEEec--CCCEEEEec
Q 012712 10 NKRARTSVDKALVDVWLRELGQLSTR-------NFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT--DGDILISGS 80 (458)
Q Consensus 10 ~~~l~~~~~d~~i~iw~~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~ 80 (458)
+.+|+.|. .+.|.||+...-..... ...+......+.. ..... -...|+.|.... +...|+.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~-----~s~~p-~PHtIN~i~v~~lg~~EVLl~c~ 121 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRL-----ISTWP-FPHTINFIKVGDLGGEEVLLLCT 121 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCcccccccccc-----ccCCC-CCceeeEEEecccCCeeEEEEEe
Confidence 55677766 78899999874322211 0011111111111 11111 223466665543 447899999
Q ss_pred CCCeEEEEECCCc-----------ce-------eeeeccCCCcceeEEEEc--cCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 81 DDRRVILWDWKTE-----------RV-------KLSFHSGHNDNVFQAKIM--PFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 81 ~d~~i~iwd~~~~-----------~~-------~~~~~~~~~~~i~~~~~~--~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
.||.|.+|.+++- .. ...+.......+++++++ . ..++||+++....|.||-......
T Consensus 122 DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~--~~rlIAVSsNs~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 122 DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK--KSRLIAVSSNSQEVTVFAFALVDE 199 (717)
T ss_pred cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC--cceEEEEecCCceEEEEEEecccc
Confidence 9999999976320 00 001111234578899998 6 788889888888898887655311
Q ss_pred -eeeeeccccccceEEEEEcCCC--Ce---EEEEecCCCeEEEEeC
Q 012712 141 -VETKLLGKHQGRAHKLAIEPGS--PH---VFYTCGEDGLVQHFDL 180 (458)
Q Consensus 141 -~~~~~~~~~~~~v~~~~~~~~~--~~---~l~s~~~dg~i~iwd~ 180 (458)
.....-..|...|.+|+|.++. +. .+++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111112366788999998754 22 6778888999998887
No 425
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.68 E-value=0.97 Score=37.11 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=153.6
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
...-..++-.| ||..-+++...+.|--.|..+++.... --+....-..+..-|++. .-++-+.. .|.-.|-++.
T Consensus 61 G~ap~dvapap--dG~VWft~qg~gaiGhLdP~tGev~~y--pLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 61 GSAPFDVAPAP--DGAVWFTAQGTGAIGHLDPATGEVETY--PLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred CCCccccccCC--CCceEEecCccccceecCCCCCceEEE--ecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCccc
Confidence 34456677788 998888888888888888888776543 223445556788889884 33433322 5666666555
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC---------CeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD---------EYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
+. ..+...... .........|.+. +++-+++... +.|++|+...
T Consensus 135 ev-t~f~lp~~~------a~~nlet~vfD~~-G~lWFt~q~G~yGrLdPa~~~i~vfpaPq------------------- 187 (353)
T COG4257 135 EV-TRFPLPLEH------ADANLETAVFDPW-GNLWFTGQIGAYGRLDPARNVISVFPAPQ------------------- 187 (353)
T ss_pred ce-EEeeccccc------CCCcccceeeCCC-ccEEEeeccccceecCcccCceeeeccCC-------------------
Confidence 43 233322111 3345778899997 5666666421 2344444432
Q ss_pred ccccccccceeEEEeCCCCcEEEEec-CCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCc
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYN-DEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAP 333 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (458)
......|+..|+|++..+.- ++.|-..|..++... .++ ..
T Consensus 188 ------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~ae-v~p--------------------------------~P 228 (353)
T COG4257 188 ------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAE-VVP--------------------------------QP 228 (353)
T ss_pred ------CCCCcceEECCCCcEEEEeccccceEEcccccCCcc-eec--------------------------------CC
Confidence 23457788899998776654 556777776554210 000 00
Q ss_pred eeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEE-EEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 334 QVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELI-RVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 334 ~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
..+ +.. .+.+-- +|.|+.-++....+.++.||-....-. ..+.+....-.++.....++.-.+--..|.|.-+
T Consensus 229 ~~~--~~g---sRriws-dpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rf 302 (353)
T COG4257 229 NAL--KAG---SRRIWS-DPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRF 302 (353)
T ss_pred Ccc--ccc---cccccc-CccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeec
Confidence 000 111 223333 788888888777788888887554311 2334444456677777667666555556778888
Q ss_pred cCCcccccccccccccEEEEEEe--cCCcEEEeeecCC
Q 012712 413 TPNAADRATLPTNIEQVCFSIYS--ADYWWSKSQNFSC 448 (458)
Q Consensus 413 ~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~s~~~d~ 448 (458)
|.++.....+.........+... |+.-|+.-.+.|.
T Consensus 303 dpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gvd~ 340 (353)
T COG4257 303 DPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGVDA 340 (353)
T ss_pred CcccceEEEecCCCCCCCceeccCCCCceeecccCcce
Confidence 88776554443333333333333 3335665555553
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.56 E-value=0.0069 Score=57.12 Aligned_cols=198 Identities=14% Similarity=0.141 Sum_probs=106.8
Q ss_pred CCcEEEeecccccceeeeeccccccceEEEEEcCCC-CeEEEEecCCCeEEEEeCC--CCCccceeeecccCCCCcceee
Q 012712 127 DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGS-PHVFYTCGEDGLVQHFDLR--TGAATELFTCRPIDDRRNYMTV 203 (458)
Q Consensus 127 dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 203 (458)
.+.+++-+...... ....+++..+.+-.+.|-... ++. . -.-|.+.+||+. .|+....+..+..... .
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~-~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-----g 180 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKG-R--RLVGELFVYDVDVLQGEIQPQLEVTPITPY-----G 180 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHH-H--HHhhhhheeehHhhccccccceEEeecCcC-----C
Confidence 45677766544322 112256777888888875322 221 1 233678888875 4555444444333222 1
Q ss_pred cceEEEEECCC--CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecC
Q 012712 204 VNLNAIAIDPR--NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYND 281 (458)
Q Consensus 204 ~~v~~~~~~p~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (458)
..+.-+.|.|- +.-++..+-.++.+++.....-. ..++..|...+..++|-..|-..
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~----- 239 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLK----- 239 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhh-----
Confidence 12334444442 24566667777788776665432 22333455666666554443111
Q ss_pred CcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEe
Q 012712 282 EFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSG 361 (458)
Q Consensus 282 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~ 361 (458)
+.+ .||||..++.+
T Consensus 240 ---------------------------------------------------------------l~~---lSpDGtv~a~a 253 (1283)
T KOG1916|consen 240 ---------------------------------------------------------------LAS---LSPDGTVFAWA 253 (1283)
T ss_pred ---------------------------------------------------------------hee---eCCCCcEEEEe
Confidence 112 28999999999
Q ss_pred cCCCeEEEEEec-CC----eEEEEeecCCc-eeeEEEecCCC---------CeEEEee-cCCcEEEecCCccccc
Q 012712 362 SDCGRIFIWKKK-GG----ELIRVIEADRH-VVNCIEPHPHS---------TVLASSG-IESDIKILTPNAADRA 420 (458)
Q Consensus 362 ~~dg~i~iwd~~-~~----~~~~~~~~~~~-~v~~~~~s~~~---------~~l~s~~-~d~~i~iw~~~~~~~~ 420 (458)
..||.++.|.+. +| .++...+.|.+ +-.|.-++.+. .++++++ .+..+++|.....+++
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999988888653 22 34445556653 32232233221 2344443 3567899987776665
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.52 E-value=1.4 Score=39.55 Aligned_cols=105 Identities=7% Similarity=-0.036 Sum_probs=63.8
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCe-----EEEEeec--CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGE-----LIRVIEA--DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
.+.++.+ .+++..++++ ..|.+.. ....++ ....+.. ....+.++.|.+++..+++| ..|.+....-..
T Consensus 282 ~l~~v~~-~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G 357 (398)
T PLN00033 282 RIQNMGW-RADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGG 357 (398)
T ss_pred ceeeeeE-cCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCC
Confidence 3778888 8898888766 4566543 333443 2222221 12358899999888766655 567776665333
Q ss_pred cccccc---ccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 417 ADRATL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 417 ~~~~~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
...... ..-....+.+.|.++++..++ +.+|.|.-|
T Consensus 358 ~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred cceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 222222 223456889999888887766 566776544
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=95.46 E-value=0.29 Score=43.01 Aligned_cols=160 Identities=10% Similarity=0.005 Sum_probs=94.4
Q ss_pred cccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 260 EQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
....+..+-..|||+.+..-+...+.++++.+...... +....-.+
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r---------------------------------kl~~dspg- 264 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR---------------------------------KLVDDSPG- 264 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchh---------------------------------hhhhcCCC-
Confidence 34677888899999999988888888888876321111 00000000
Q ss_pred cceeeee-EEEEecCCCcEEEEecCCCeEEEE-EecCC-e----EEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 340 RNCVTVK-GVNFFGPKCEYVVSGSDCGRIFIW-KKKGG-E----LIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 340 ~~~~~i~-~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~-~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
+....|. .+.. -..|.-+..+..||-|.-| |...+ . .++.++-...++..+.-..+.+-+++-+..|++.++
T Consensus 265 ~~~~~Vte~l~l-L~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f 343 (733)
T COG4590 265 DSRHQVTEQLYL-LSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSF 343 (733)
T ss_pred chHHHHHHHHHH-HhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeee
Confidence 0000011 1111 2346667788889888777 44322 1 222233233344444444445567788889999988
Q ss_pred cCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 413 TPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 413 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.....+..-...-.+.+.-+++||.+.+|++ -..|.|+++..
T Consensus 344 ~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~-e~~gki~~~~l 385 (733)
T COG4590 344 YSTSEKLLLFERAYQAPQLVAMSPNQAYLLS-EDQGKIRLAQL 385 (733)
T ss_pred ecccCcceehhhhhcCcceeeeCcccchhee-ecCCceEEEEe
Confidence 7666655544444556778899999998876 33456777654
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.43 E-value=1.8 Score=38.64 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=38.4
Q ss_pred cceeEEEEccCCCCeEEEEEc-----------CCC-cEEEeeccccc--ceeeeeccccccceEEEEEcCCCCeEEEEec
Q 012712 105 DNVFQAKIMPFTDDRSIVTCA-----------ADG-QVRHAQILERG--GVETKLLGKHQGRAHKLAIEPGSPHVFYTCG 170 (458)
Q Consensus 105 ~~i~~~~~~~~~~~~~l~s~~-----------~dg-~i~vw~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 170 (458)
.....|+|.+ +|+++++-. ..+ .|.+++-.++. ......+.......+.+++.+++ +++ +.
T Consensus 14 ~~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~ 88 (367)
T TIGR02604 14 RNPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-AT 88 (367)
T ss_pred CCCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEE-eC
Confidence 3456788888 888777643 223 67666544322 11112233333456789998877 444 44
Q ss_pred CCCeEEEEeCC
Q 012712 171 EDGLVQHFDLR 181 (458)
Q Consensus 171 ~dg~i~iwd~~ 181 (458)
.....++.|..
T Consensus 89 ~~~i~~~~d~~ 99 (367)
T TIGR02604 89 PPDILFLRDKD 99 (367)
T ss_pred CCeEEEEeCCC
Confidence 44333343543
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.39 E-value=1.5 Score=37.47 Aligned_cols=191 Identities=13% Similarity=0.188 Sum_probs=89.7
Q ss_pred ceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec--cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 63 CVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH--SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 63 ~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
...++.|..+ ..+++| ..+ +.+...+.|+.-..+. ..-.+....+.... ++..++.+ ..|. +|....+..
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~--~~~~~l~~-~~G~--iy~T~DgG~ 134 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALG--DGSAELAG-DRGA--IYRTTDGGK 134 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEE--TTEEEEEE-TT----EEEESSTTS
T ss_pred eEEEEEecCC-ceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcC--CCcEEEEc-CCCc--EEEeCCCCC
Confidence 3567777643 344444 445 4444445554333321 12233444555544 55544444 3454 444444443
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
-.......-...+..+.-++++ .+++++.......-||.-...-....+. ....+..|.|.|+ +.+.+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~----------~~~riq~~gf~~~-~~lw~ 202 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRN----------SSRRIQSMGFSPD-GNLWM 202 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE------------SSS-EEEEEE-TT-S-EEE
T ss_pred CeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccC----------ccceehhceecCC-CCEEE
Confidence 3333344555778888899999 6666666655556776543222111111 2347999999998 44444
Q ss_pred EecCCCeEEEEecC-CCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEE
Q 012712 221 VAGSDEYTRLYDIR-KYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYL 286 (458)
Q Consensus 221 ~~~~dg~i~i~d~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i 286 (458)
....|.|+.=+.. ..+ ..+ + ........-.+..++|.++++..++++.+.+..
T Consensus 203 -~~~Gg~~~~s~~~~~~~~w~~------~------~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 203 -LARGGQIQFSDDPDDGETWSE------P------IIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp -EETTTEEEEEE-TTEEEEE---------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred -EeCCcEEEEccCCCCcccccc------c------cCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 3488888887621 111 100 0 001111234588999999999999888885543
No 431
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.39 E-value=2.1 Score=39.17 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=40.2
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec--C---CceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA--D---RHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~---~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
|..+.- .|+++ |..|+.+|-++. +.+.++....+.. | ...+..+..-|+|++-+..+ + .|..|+-...
T Consensus 421 V~aive-d~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~-gva~~~sq~~ 493 (671)
T COG3292 421 VSAIVE-DPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-S-GVAAWESQRR 493 (671)
T ss_pred eeeeee-cCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEEec-c-eeeeeccccc
Confidence 666665 88888 777888886654 3334333333321 1 23477888899998644332 2 3567765544
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.36 E-value=1.6 Score=37.40 Aligned_cols=149 Identities=10% Similarity=0.094 Sum_probs=76.6
Q ss_pred cccceeEEEeCCCCcEEEEecCCcEE-EEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecC
Q 012712 260 EQVGITGLAFSDQSELLVSYNDEFIY-LFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKG 338 (458)
Q Consensus 260 ~~~~i~~~~~~~~~~~l~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (458)
..+.+..+..+++|++++++..+.++ -|+.-.. .-.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---------------------------------------~w~~~~r 183 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---------------------------------------TWQPHNR 183 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---------------------------------------S-EEEE-
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCc---------------------------------------cceEEcc
Confidence 45678889999999999999988754 5664321 0111111
Q ss_pred ccceeeeeEEEEecCCCcEEEEecCCCeEEEEEe-cCCeEEEE----eecCCceeeEEEecCCCCeEEEeecCCcEEEec
Q 012712 339 HRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKK-KGGELIRV----IEADRHVVNCIEPHPHSTVLASSGIESDIKILT 413 (458)
Q Consensus 339 ~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~ 413 (458)
. ....+.++.| +|++.+.+.+ ..|.|+.=+. ...+.... +....-.+.+++|.+++...|+|+. |.+ +..
T Consensus 184 ~-~~~riq~~gf-~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S 258 (302)
T PF14870_consen 184 N-SSRRIQSMGF-SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVS 258 (302)
T ss_dssp --SSS-EEEEEE--TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEE
T ss_pred C-ccceehhcee-cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEe
Confidence 1 1124889998 9998876655 7888888772 12222111 1112224789999999888887664 443 334
Q ss_pred CCccccc----ccccccccEEEEEEecCCcEEEeeecCCceEEE
Q 012712 414 PNAADRA----TLPTNIEQVCFSIYSADYWWSKSQNFSCSILLF 453 (458)
Q Consensus 414 ~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w 453 (458)
.+.++.- ....-....+.+.|.++.+-++. +.+|.|.=|
T Consensus 259 ~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 259 TDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp SSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 4444322 12233446888998877655544 677776544
No 433
>PHA02790 Kelch-like protein; Provisional
Probab=95.32 E-value=2.5 Score=39.45 Aligned_cols=147 Identities=10% Similarity=-0.049 Sum_probs=72.1
Q ss_pred cCCCEEEEecCC--CeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCC---cEEEeecccccceeeee
Q 012712 71 TDGDILISGSDD--RRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADG---QVRHAQILERGGVETKL 145 (458)
Q Consensus 71 ~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg---~i~vw~~~~~~~~~~~~ 145 (458)
-++...+.||.+ ..+..||..+++-...-.......-.+++. - ++...+.||.++ .+..||..++.......
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-I--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-E--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence 367777778754 357788876553221110011111112222 2 788888887653 46678877665433211
Q ss_pred ccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCC
Q 012712 146 LGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSD 225 (458)
Q Consensus 146 ~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 225 (458)
........ +++ .-++ .+.+.|+ .+.+||.++.+-...-... . .......+.+ ++.+.+.|+.+
T Consensus 394 m~~~r~~~-~~~-~~~~-~IYv~GG---~~e~ydp~~~~W~~~~~m~---~-----~r~~~~~~v~---~~~IYviGG~~ 456 (480)
T PHA02790 394 TYYPHYKS-CAL-VFGR-RLFLVGR---NAEFYCESSNTWTLIDDPI---Y-----PRDNPELIIV---DNKLLLIGGFY 456 (480)
T ss_pred CCCccccc-eEE-EECC-EEEEECC---ceEEecCCCCcEeEcCCCC---C-----CccccEEEEE---CCEEEEECCcC
Confidence 22111111 222 2234 5666663 4678888766543221110 0 0111222222 25677777754
Q ss_pred -----CeEEEEecCCCc
Q 012712 226 -----EYTRLYDIRKYK 237 (458)
Q Consensus 226 -----g~i~i~d~~~~~ 237 (458)
..+..||..+.+
T Consensus 457 ~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 457 RGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCcccceEEEEECCCCe
Confidence 357777777654
No 434
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=95.17 E-value=1.8 Score=36.99 Aligned_cols=198 Identities=16% Similarity=0.160 Sum_probs=96.3
Q ss_pred eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCC----cEEE-EecCCCeEEEEecCCCccCCCcc---CC
Q 012712 174 LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNA----NLFA-VAGSDEYTRLYDIRKYKWDGSTD---FG 245 (458)
Q Consensus 174 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~-~~~~dg~i~i~d~~~~~~~~~~~---~~ 245 (458)
.|.+||+.+.+.++.+..+..... ....+..+.+....+ .+++ +=...+.|.++|+.+++.-.... ..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~ 110 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSP 110 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTT
T ss_pred EEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcce
Confidence 577889998888777776543322 234577777776322 2333 33344679999999876321110 00
Q ss_pred CCC-CCcCCCccccccccceeEEEeCC---CCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccC
Q 012712 246 QPA-DYFCPPNLIGDEQVGITGLAFSD---QSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAAS 321 (458)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (458)
.|. ..+......-.....+..++.+| +++.|....-....+|.+.+......-.
T Consensus 111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~---------------------- 168 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSL---------------------- 168 (287)
T ss_dssp S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT-----------------------
T ss_pred eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccc----------------------
Confidence 000 00000000001123366677765 6667776654444455444321111100
Q ss_pred CCCCCcc-cccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCC---eEEEEee-cC--CceeeEEEec
Q 012712 322 PSTANTD-VRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGG---ELIRVIE-AD--RHVVNCIEPH 394 (458)
Q Consensus 322 ~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~--~~~v~~~~~s 394 (458)
.... .....+.+ +.... ....+++ +++|.++++--..+.|..|+.... +....+. .. -..+.++.+.
T Consensus 169 ---~~~~~~~~~v~~l-G~k~~-~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~ 242 (287)
T PF03022_consen 169 ---SDAQALASQVQDL-GDKGS-QSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKID 242 (287)
T ss_dssp ----HHH-HHHT-EEE-EE----SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-
T ss_pred ---cccccccccceec-cccCC-CCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeec
Confidence 0000 01111222 22111 2456666 899999999889999999998651 1222222 11 2467888898
Q ss_pred C--CCCeEEEe
Q 012712 395 P--HSTVLASS 403 (458)
Q Consensus 395 ~--~~~~l~s~ 403 (458)
+ +|.+.+..
T Consensus 243 ~~~~g~L~v~s 253 (287)
T PF03022_consen 243 PEGDGYLWVLS 253 (287)
T ss_dssp T--TS-EEEEE
T ss_pred cccCceEEEEE
Confidence 8 77665554
No 435
>PRK10115 protease 2; Provisional
Probab=95.17 E-value=3.5 Score=40.37 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=66.8
Q ss_pred CceEEEEEecCCCEEEEecC-----CCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC------CcE
Q 012712 62 GCVNTVSFNTDGDILISGSD-----DRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD------GQV 130 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d------g~i 130 (458)
-.+..+.+||||++|+.+.. ...|++-|+.+++.+.....+ .-..++|.+ |++.|+....+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~---~~~~~~w~~--D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN---VEPSFVWAN--DSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC---cceEEEEee--CCCEEEEEEecCCCCCCCEE
Confidence 35677899999998886532 247889999888644333222 115699999 88776655432 357
Q ss_pred EEeecccccceeeeeccccccceE-EEEEcCCCCeEEEEec--CCCeEEEEeCC
Q 012712 131 RHAQILERGGVETKLLGKHQGRAH-KLAIEPGSPHVFYTCG--EDGLVQHFDLR 181 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~--~dg~i~iwd~~ 181 (458)
..+++.++.......+........ .+..+.++..+++... .++.+.+++..
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 777887763222222332222222 3333446644444333 24578888853
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=95.09 E-value=2.2 Score=37.52 Aligned_cols=150 Identities=8% Similarity=-0.045 Sum_probs=85.9
Q ss_pred ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
...+..+.+.|++.+++++..+.++.- .+.+ ...-......
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~g-------------------------------------g~tW~~~~~~- 212 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPG-------------------------------------QTAWTPHQRN- 212 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCC-------------------------------------CCeEEEeeCC-
Confidence 457889999999988888887765432 1111 0000111111
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeec----CCceeeEEEecCCCCeEEEeecCCcEEEecCCc
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEA----DRHVVNCIEPHPHSTVLASSGIESDIKILTPNA 416 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~ 416 (458)
....+.++.+ .++++.+++| ..|.+++=..+.++.-..... ....+.++++.|++..++++ .+|.+. .....
T Consensus 213 ~~~~l~~i~~-~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~ 288 (334)
T PRK13684 213 SSRRLQSMGF-QPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDG 288 (334)
T ss_pred CcccceeeeE-cCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCC
Confidence 1124778887 8998877765 467665433344433222221 12357889999988766544 566554 34444
Q ss_pred cccc-cc---ccccccEEEEEEecCCcEEEeeecCCceEEEE
Q 012712 417 ADRA-TL---PTNIEQVCFSIYSADYWWSKSQNFSCSILLFE 454 (458)
Q Consensus 417 ~~~~-~~---~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~ 454 (458)
++.- .. ..-......+.|..+++.++. +..|.|.-|+
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 4332 22 122235788888877777654 6677877665
No 437
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=3.4 Score=39.32 Aligned_cols=94 Identities=7% Similarity=0.080 Sum_probs=58.6
Q ss_pred eeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEeecC-CceeeEEEecCCCCeEEEeecCCcEEEecCCcccccccc
Q 012712 345 VKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIEAD-RHVVNCIEPHPHSTVLASSGIESDIKILTPNAADRATLP 423 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 423 (458)
+..+.. ||+.++|+-=...|.|.+-+.+..+.+.++... ..+...++|.-+. -++.+.+..+.+.........-..
T Consensus 219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~V~f~y 295 (829)
T KOG2280|consen 219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND--AVVLSWEVNLMLVGPPGDSVQFYY 295 (829)
T ss_pred EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC--ceEEEEeeeEEEEcCCCCcccccc
Confidence 667777 999999999999999999988777777666522 2234477786544 233344555666555444433332
Q ss_pred cccccEEEEEEecCCcEEEee
Q 012712 424 TNIEQVCFSIYSADYWWSKSQ 444 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~~~l~s~ 444 (458)
.+.. + +.-=+||-.+++.
T Consensus 296 d~t~-~--l~~E~DGVRI~t~ 313 (829)
T KOG2280|consen 296 DETA-I--LSAEVDGVRIITS 313 (829)
T ss_pred CCCc-e--eeeccCeeEEecc
Confidence 2222 1 5556677666653
No 438
>PRK13684 Ycf48-like protein; Provisional
Probab=94.93 E-value=2.4 Score=37.24 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=81.6
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEE-EecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCc
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRL-YDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEF 283 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 283 (458)
.+.++.+.|+ +.+++++ ..|.+.. +|-..... ..........++.+.+.++++.++.+..+.
T Consensus 174 ~~~~i~~~~~-g~~v~~g-~~G~i~~s~~~gg~tW---------------~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~ 236 (334)
T PRK13684 174 VVRNLRRSPD-GKYVAVS-SRGNFYSTWEPGQTAW---------------TPHQRNSSRRLQSMGFQPDGNLWMLARGGQ 236 (334)
T ss_pred eEEEEEECCC-CeEEEEe-CCceEEEEcCCCCCeE---------------EEeeCCCcccceeeeEcCCCCEEEEecCCE
Confidence 5788999997 5555544 4554442 22111111 011122346788999999999888877665
Q ss_pred EEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecC
Q 012712 284 IYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSD 363 (458)
Q Consensus 284 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~ 363 (458)
+++=..+.+..-.. .. .........+.++.+ .+++..+++| .
T Consensus 237 ~~~~s~d~G~sW~~-----------------------------------~~-~~~~~~~~~l~~v~~-~~~~~~~~~G-~ 278 (334)
T PRK13684 237 IRFNDPDDLESWSK-----------------------------------PI-IPEITNGYGYLDLAY-RTPGEIWAGG-G 278 (334)
T ss_pred EEEccCCCCCcccc-----------------------------------cc-CCccccccceeeEEE-cCCCCEEEEc-C
Confidence 54222222211100 00 000001113677777 8887766555 5
Q ss_pred CCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 364 CGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
+|.+.. ....++.-.... .-....+.+.|..+++.+++ +..|.|.-|+-
T Consensus 279 ~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 279 NGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred CCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 676553 444444433332 12235777888777776664 55788877764
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.84 E-value=2.9 Score=37.67 Aligned_cols=155 Identities=9% Similarity=0.084 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCcEEEeeccccccee--eeeccccccceEEEEEc---CCCCeEEEEecCCCeEEEEeCCCCCcc----c
Q 012712 117 DDRSIVTCAADGQVRHAQILERGGVE--TKLLGKHQGRAHKLAIE---PGSPHVFYTCGEDGLVQHFDLRTGAAT----E 187 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~~~~~~--~~~~~~~~~~v~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~----~ 187 (458)
+...|++|+..|.++|++....+... ...-..-..+|..+..- +......++.-.-..+.+|.+...... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 45789999999999999986544211 11011234577776653 222222333345567888877322111 0
Q ss_pred eeeecccCCCCcceeecceEEEEECCC----CCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccc
Q 012712 188 LFTCRPIDDRRNYMTVVNLNAIAIDPR----NANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVG 263 (458)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (458)
.+..... ..|.-......++.-|- +..++.+-+.||.+.+|+-+....... ... .--
T Consensus 116 ~~~L~~~---yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~---------------lp~-~ll 176 (418)
T PF14727_consen 116 QYQLELI---YEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRF---------------LPD-FLL 176 (418)
T ss_pred EEEEEEE---EEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEE---------------cCC-CCC
Confidence 0000000 01111112233333332 246889999999999999876432111 000 111
Q ss_pred eeEEEeCCCCcEEEEecCC-cEEEEEcc
Q 012712 264 ITGLAFSDQSELLVSYNDE-FIYLFTQD 290 (458)
Q Consensus 264 i~~~~~~~~~~~l~~~~~~-~i~i~~~~ 290 (458)
...+.|.+....+++++.. .+.-|...
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHH
Confidence 2346677777677776654 78877754
No 440
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.78 E-value=1 Score=39.80 Aligned_cols=95 Identities=7% Similarity=-0.015 Sum_probs=67.0
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe----ecCCceeeEEEecCCCCeEEEeecCCcEEEecCCc--c
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EADRHVVNCIEPHPHSTVLASSGIESDIKILTPNA--A 417 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~--~ 417 (458)
.|.++.| |+|.+.||.--.+.+|.+++....+....+ +..+..|....|+.. .-+|... +.-+.+|.+.. .
T Consensus 68 ~I~SIkF-SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-~~G~e~y~v~pekr 144 (657)
T KOG2377|consen 68 EIKSIKF-SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-DQGIEFYQVLPEKR 144 (657)
T ss_pred ceeEEEe-ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-cCCeEEEEEchhhh
Confidence 4899998 999999999999999999998443333222 233456889999866 4455444 33456665543 3
Q ss_pred cccccccccccEEEEEEecCCcEE
Q 012712 418 DRATLPTNIEQVCFSIYSADYWWS 441 (458)
Q Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l 441 (458)
....+..+.-.|....|.|+-..+
T Consensus 145 slRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 145 SLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred hhhhhhhcccCccEEEEccccceE
Confidence 445667788889999999998544
No 441
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.71 E-value=3.4 Score=37.94 Aligned_cols=153 Identities=14% Similarity=0.084 Sum_probs=80.7
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
..+|.++.+...|. |-.|+.|| +..||..+++.++.-......+|..+.-+- . ..|..|+.+| +.+.+.+..+.
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--q-g~LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--Q-GRLWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--c-CcEEEEeccc-eEEEchhhccc
Confidence 45677888877775 55677877 777888877765554333346677666654 3 4566666655 56665544211
Q ss_pred eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 141 VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 141 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
......-....|..+.-..+| .+-.|+..|..+.--.+.+-.....+ .+.....|.++..+.++ -+.
T Consensus 238 -sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~--------~~l~~S~vnsL~~D~dG--sLW 304 (671)
T COG3292 238 -SNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSK--------MHLGVSTVNSLWLDTDG--SLW 304 (671)
T ss_pred -cccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccc--------cCCccccccceeeccCC--CEe
Confidence 111111223445555444455 25566666644332222221111111 11133356666666653 566
Q ss_pred EecCCCeEEEEe
Q 012712 221 VAGSDEYTRLYD 232 (458)
Q Consensus 221 ~~~~dg~i~i~d 232 (458)
+++.+|.+++-+
T Consensus 305 v~t~~giv~~~~ 316 (671)
T COG3292 305 VGTYGGIVRYLT 316 (671)
T ss_pred eeccCceEEEec
Confidence 777777666543
No 442
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.63 E-value=2.1 Score=35.24 Aligned_cols=200 Identities=13% Similarity=0.108 Sum_probs=116.9
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEE
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLY 231 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~ 231 (458)
.-..++-.||| ..-+++...+.|--.|..+++....-. . .......+...||++.++.-.+. -|.-.
T Consensus 63 ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypL-g---------~Ga~Phgiv~gpdg~~Witd~~~--aI~R~ 129 (353)
T COG4257 63 APFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPL-G---------SGASPHGIVVGPDGSAWITDTGL--AIGRL 129 (353)
T ss_pred CccccccCCCC-ceEEecCccccceecCCCCCceEEEec-C---------CCCCCceEEECCCCCeeEecCcc--eeEEe
Confidence 34567788888 677888888888888888887543221 1 22245677788886555543322 46666
Q ss_pred ecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccc
Q 012712 232 DIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASE 311 (458)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (458)
|.++.+.... .. .............|.+.|.+..++..+.---.|..
T Consensus 130 dpkt~evt~f----------~l--p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa--------------------- 176 (353)
T COG4257 130 DPKTLEVTRF----------PL--PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPA--------------------- 176 (353)
T ss_pred cCcccceEEe----------ec--ccccCCCcccceeeCCCccEEEeeccccceecCcc---------------------
Confidence 6655542211 11 12223456788899999998888764421111111
Q ss_pred cCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCcee
Q 012712 312 MGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVV 388 (458)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v 388 (458)
...++.+...... .-..++. .|||..-++.-.+..|-..|..++.. ..+. .....-
T Consensus 177 ------------------~~~i~vfpaPqG~-gpyGi~a-tpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gs 235 (353)
T COG4257 177 ------------------RNVISVFPAPQGG-GPYGICA-TPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGS 235 (353)
T ss_pred ------------------cCceeeeccCCCC-CCcceEE-CCCCcEEEEeccccceEEcccccCCc-ceecCCCcccccc
Confidence 1122333322222 2356666 89998877766777787777766622 2222 111223
Q ss_pred eEEEecCCCCeEEEeecCCcEEEecCCccc
Q 012712 389 NCIEPHPHSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 389 ~~~~~s~~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
..+--+|.|+.-+|....+.+.-+|.....
T Consensus 236 Rriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 236 RRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred cccccCccCcEEEeccCCceeeEeCccccc
Confidence 445556788888887777888888877553
No 443
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=2.8 Score=40.85 Aligned_cols=94 Identities=7% Similarity=0.064 Sum_probs=56.2
Q ss_pred ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC-CCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCc
Q 012712 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG-PNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGH 339 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (458)
...|..+.++|+|++++..+...|.+..+...-. ...+........... ...-..+...
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt--------------------~~v~~~~~~~ 143 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRT--------------------VPVDERFFTS 143 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEE--------------------EEechhhccC
Confidence 4579999999999999999888888877753210 000100000000000 0000111111
Q ss_pred cceeeeeEEEEecCC---CcEEEEecCCCeEEEEEecCC
Q 012712 340 RNCVTVKGVNFFGPK---CEYVVSGSDCGRIFIWKKKGG 375 (458)
Q Consensus 340 ~~~~~i~~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~ 375 (458)
.....|..+.| +|. +..|+.-..|+++|+||+...
T Consensus 144 ~~~~~i~qv~W-hP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRW-HPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEE-cCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 22235889998 776 578888899999999999653
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=94.60 E-value=3.9 Score=38.14 Aligned_cols=147 Identities=10% Similarity=-0.024 Sum_probs=71.8
Q ss_pred CCCEEEEecCC-----CeEEEEECCCcceeeeec-cCCCcceeEEEEccCCCCeEEEEEcCC--CcEEEeecccccceee
Q 012712 72 DGDILISGSDD-----RRVILWDWKTERVKLSFH-SGHNDNVFQAKIMPFTDDRSIVTCAAD--GQVRHAQILERGGVET 143 (458)
Q Consensus 72 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~s~~~d--g~i~vw~~~~~~~~~~ 143 (458)
++.+++.||.+ ..+..||..++.-...-. ...... .+++. - ++...+.||.+ ..+..||..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~-~--~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVP-A--NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEE-E--CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 45566777754 356778877654322110 111111 12222 3 77888888764 3577788765544332
Q ss_pred eeccccccceEEEEEcCCCCeEEEEecCCC---eEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEE
Q 012712 144 KLLGKHQGRAHKLAIEPGSPHVFYTCGEDG---LVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFA 220 (458)
Q Consensus 144 ~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 220 (458)
..+.........+. -++ ++.+.|+.++ .+..||.++.+-...-... . .......+++ ++.+.+
T Consensus 347 ~~l~~~r~~~~~~~--~~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~---~-----~r~~~~~~~~---~~~IYv 412 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY---Y-----PHYKSCALVF---GRRLFL 412 (480)
T ss_pred CCCCCCCcccEEEE--ECC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCC---C-----ccccceEEEE---CCEEEE
Confidence 22221111112222 234 6777777653 4677887765432211100 0 0001112222 245666
Q ss_pred EecCCCeEEEEecCCCccC
Q 012712 221 VAGSDEYTRLYDIRKYKWD 239 (458)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~ 239 (458)
.|+ .+.+||.++.+..
T Consensus 413 ~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 413 VGR---NAEFYCESSNTWT 428 (480)
T ss_pred ECC---ceEEecCCCCcEe
Confidence 663 5778998877654
No 445
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.59 E-value=0.25 Score=40.05 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=51.5
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-------ccccceeEEEeCCCCcEEEEecCCcEEEEE
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-------DEQVGITGLAFSDQSELLVSYNDEFIYLFT 288 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~ 288 (458)
+.++++-+.+|.+++||+.+.+...... ....+.. .....|..+.++.+|.-+++-+++..+.|+
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--------Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPV--------SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCc--------cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 5689999999999999999987543320 0011111 345788999999999999999989899998
Q ss_pred ccCC
Q 012712 289 QDMG 292 (458)
Q Consensus 289 ~~~~ 292 (458)
.+..
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7653
No 446
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.52 E-value=0.6 Score=43.93 Aligned_cols=95 Identities=15% Similarity=0.228 Sum_probs=59.2
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG 183 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 183 (458)
..-++++.-+| .+..++.++.||.|++++........ +-....+-..+.|...| |++...|..+.-|. +.|
T Consensus 14 ~e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~qsk---i~~~~~p~~nlv~tnhg---l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 14 DEFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRRQSK---ICEEAKPKENLVFTNHG---LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred cceeeeeeecC--CCceEEEEecCCcEEEEeecccchhh---hhhhcCCccceeeeccc---eEEEeccchhheee-ccC
Confidence 34567788888 99999999999999999986554322 11122344556676655 67778888888885 334
Q ss_pred CccceeeecccCCCCcceeecceEEEEECCC
Q 012712 184 AATELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
-..+.+..... ......++...|.
T Consensus 85 vvqqqfdyndq-------sekefss~~cdpt 108 (1636)
T KOG3616|consen 85 VVQQQFDYNDQ-------SEKEFSSILCDPT 108 (1636)
T ss_pred cchhhccccch-------hhhhccceecCch
Confidence 33333332211 2234556666665
No 447
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=94.43 E-value=5.8 Score=39.36 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=49.2
Q ss_pred eeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEe----ec---------------CCceeeEEEecCCCCeEEEee
Q 012712 344 TVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVI----EA---------------DRHVVNCIEPHPHSTVLASSG 404 (458)
Q Consensus 344 ~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~---------------~~~~v~~~~~s~~~~~l~s~~ 404 (458)
.|.++.. ..-+.+++..-.||+|.++|..+.+.+... .. +...+..++|||.+..++.-.
T Consensus 261 ~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred eEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 4777776 667779999999999999998877555333 10 111344588999999999999
Q ss_pred cCCcEE
Q 012712 405 IESDIK 410 (458)
Q Consensus 405 ~d~~i~ 410 (458)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999866
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.36 E-value=0.35 Score=39.19 Aligned_cols=70 Identities=10% Similarity=0.229 Sum_probs=53.0
Q ss_pred cCCCcEEEEecCCCeEEEEEecCCeEEEEe-------e-------cCCceeeEEEecCCCCeEEEeecCCcEEEecCCcc
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGGELIRVI-------E-------ADRHVVNCIEPHPHSTVLASSGIESDIKILTPNAA 417 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~~~~ 417 (458)
..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+.+-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 567889999999999999999988765321 1 2445688899999998887765 578899988765
Q ss_pred ccccc
Q 012712 418 DRATL 422 (458)
Q Consensus 418 ~~~~~ 422 (458)
....+
T Consensus 98 ~W~~v 102 (219)
T PF07569_consen 98 CWIRV 102 (219)
T ss_pred eeEEe
Confidence 44433
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.28 E-value=1.4 Score=31.84 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=64.9
Q ss_pred cCCCcEEEEecCCCeEEEEEecCC--------eEEEEeecCCceeeEEEecC-----CCCeEEEeecCCcEEEecCCccc
Q 012712 352 GPKCEYVVSGSDCGRIFIWKKKGG--------ELIRVIEADRHVVNCIEPHP-----HSTVLASSGIESDIKILTPNAAD 418 (458)
Q Consensus 352 s~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~i~iw~~~~~~ 418 (458)
+....-|++++.-|+|.|++.... ..++.|. -...|++|+-.+ +...|+.|+ ...|..||+....
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 555667888888889999886532 2344444 234577775433 234566555 6789999999987
Q ss_pred ccccccccccEEEEEEecC----CcEEEeeecCCceEEEEE
Q 012712 419 RATLPTNIEQVCFSIYSAD----YWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 419 ~~~~~~~~~~v~~~~~s~d----~~~l~s~~~d~~i~~w~~ 455 (458)
-.-...-...|.++.+-.- ..++ ..+.+++|.=||+
T Consensus 85 d~Fyke~~DGvn~i~~g~~~~~~~~l~-ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 85 DLFYKEVPDGVNAIVIGKLGDIPSPLV-IVGGNCSIQGFDY 124 (136)
T ss_pred hhhhhhCccceeEEEEEecCCCCCcEE-EECceEEEEEeCC
Confidence 7766666777888877432 2444 4455566665553
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.26 E-value=0.45 Score=41.90 Aligned_cols=168 Identities=17% Similarity=0.129 Sum_probs=96.0
Q ss_pred cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeecccccc----ceE-EEEEcCCCCeEEEEecCCCeE
Q 012712 101 SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQG----RAH-KLAIEPGSPHVFYTCGEDGLV 175 (458)
Q Consensus 101 ~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~~l~s~~~dg~i 175 (458)
......+..+-..| |++.+..-+. .++.++++.+......+......+ .|+ ++..-..+ .-++.+..||-|
T Consensus 217 ~~~~~~v~qllL~P--dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg-~SLLv~~~dG~v 292 (733)
T COG4590 217 SVPFSDVSQLLLTP--DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG-FSLLVVHEDGLV 292 (733)
T ss_pred CCCccchHhhEECC--CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc-eeEEEEcCCCce
Confidence 44556788888999 9999887765 678888886644322221221111 122 11222333 567778888888
Q ss_pred EEE-eCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCC
Q 012712 176 QHF-DLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPP 254 (458)
Q Consensus 176 ~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (458)
.-| |.+.+.. ..+........ ...++..+.-.. +.+-+++-+.+|++..+.....+..
T Consensus 293 sQWFdvr~~~~-p~l~h~R~f~l----~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~l--------------- 351 (733)
T COG4590 293 SQWFDVRRDGQ-PHLNHIRNFKL----APAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLL--------------- 351 (733)
T ss_pred eeeeeeecCCC-Ccceeeecccc----Ccccceeecccc-ccceEEEEcCCCceeeeecccCcce---------------
Confidence 766 5554332 21211100000 111222222222 2456777788888887765544321
Q ss_pred ccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCC
Q 012712 255 NLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLG 294 (458)
Q Consensus 255 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~ 294 (458)
+...--..+.-+++||.+.++++-..++++++.+++...
T Consensus 352 -L~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 352 -LFERAYQAPQLVAMSPNQAYLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred -ehhhhhcCcceeeeCcccchheeecCCceEEEEecCCCC
Confidence 111112356678999999999999999999999887653
No 451
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.09 E-value=6.7 Score=38.77 Aligned_cols=158 Identities=16% Similarity=0.086 Sum_probs=88.8
Q ss_pred ccccccccccccccceEEeeeeeEeecCCCce------EEEEEec--CCCEEEEecCCCeEEEEECCCcceeeeeccCCC
Q 012712 33 STRNFALRRRASEDLVLRLGIYAKLDKHRGCV------NTVSFNT--DGDILISGSDDRRVILWDWKTERVKLSFHSGHN 104 (458)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------~~~~~s~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 104 (458)
-.++++++..-..+.+.++++.-+++.....- .....+| .+..|..++.++.|.-.|..+|+.+.++.....
T Consensus 146 ~~~RySpL~qIn~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 146 AGQRYSPLDQINPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred cccccCcccccCcccccCceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCC
Confidence 33466666666666666776666664221000 1222333 255677788889999999999998877632111
Q ss_pred c-------ceeEEEEcc--------------CCCCeEEEEEcCCCcEEEeecccccceeeeeccc----------cccce
Q 012712 105 D-------NVFQAKIMP--------------FTDDRSIVTCAADGQVRHAQILERGGVETKLLGK----------HQGRA 153 (458)
Q Consensus 105 ~-------~i~~~~~~~--------------~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~----------~~~~v 153 (458)
. ....+.+.. ...+..++.++.|+.+.-.|..+++.+......+ ....-
T Consensus 226 ~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~ 305 (764)
T TIGR03074 226 TEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGY 305 (764)
T ss_pred cccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcc
Confidence 0 012233321 1134478888889999999998888765411100 00000
Q ss_pred EEEEEcC--CCCeEEEEecC----------CCeEEEEeCCCCCccceeee
Q 012712 154 HKLAIEP--GSPHVFYTCGE----------DGLVQHFDLRTGAATELFTC 191 (458)
Q Consensus 154 ~~~~~~~--~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~ 191 (458)
..+.-.| .+ ..++.++. +|.|+-+|.++++....+..
T Consensus 306 ~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 306 YYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred cccccCCEEEC-CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 0011111 02 24555532 68899999999998877653
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.93 E-value=1.2 Score=34.72 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=24.3
Q ss_pred eeeEEEEecCCC------cEEEEecCCCeEEEEEecC
Q 012712 344 TVKGVNFFGPKC------EYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 344 ~i~~~~~~s~~~------~~l~~~~~dg~i~iwd~~~ 374 (458)
.+.+++| ||-| -+|++.+.+|.|.||....
T Consensus 87 ~vv~~aW-SP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAW-SPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEE-CCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4889998 9854 4788889999999998653
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.73 E-value=2.9 Score=33.30 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=65.2
Q ss_pred eEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCC------eEEEE-ecCCC
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDE------YTRLY-DIRKY 236 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~i~-d~~~~ 236 (458)
.+|++ ...+.|.+|++.+.......... .-+.|..+.++.. |+++++--.+. .+|+| +.+..
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~~~~~~~~F~---------Tv~~V~~l~y~~~-GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQEECPLLCTFS---------TVGRVLQLVYSEA-GDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eEEEE-cCCCEEEEEEcccCCCceeEEEc---------chhheeEEEeccc-cceEEEEEeecCCccceEEEEEEEhhhh
Confidence 44443 56678999999844443333222 3357899999997 78998854322 55665 23222
Q ss_pred c----cCCCccCCCCCC-------CcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCC
Q 012712 237 K----WDGSTDFGQPAD-------YFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMG 292 (458)
Q Consensus 237 ~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~ 292 (458)
+ .....-.+.+.. ......+.-+-..++.+++-.|-.--|+.|+++.+.+|.+...
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1 110000010000 0001111112245677888888766677888999999987653
No 454
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.71 E-value=4.5 Score=35.47 Aligned_cols=70 Identities=17% Similarity=0.281 Sum_probs=40.9
Q ss_pred eeEEEEecCCCcEEEEecC-----CC---------eEEEE--EecC-CeEEEEe----ec-----CCceeeEEEecCCCC
Q 012712 345 VKGVNFFGPKCEYVVSGSD-----CG---------RIFIW--KKKG-GELIRVI----EA-----DRHVVNCIEPHPHST 398 (458)
Q Consensus 345 i~~~~~~s~~~~~l~~~~~-----dg---------~i~iw--d~~~-~~~~~~~----~~-----~~~~v~~~~~s~~~~ 398 (458)
..++++ +|+|+.|+++.+ |+ .++++ |..+ ++....+ .. ....|..+.+-++++
T Consensus 149 ~E~la~-~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 149 FEGLAV-SPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred eEEEEE-CCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 788998 999996665432 22 14454 4443 3233222 21 345688999999999
Q ss_pred eEEEe-----ecCCcEEEecCC
Q 012712 399 VLASS-----GIESDIKILTPN 415 (458)
Q Consensus 399 ~l~s~-----~~d~~i~iw~~~ 415 (458)
+|+-= +....++|+.+.
T Consensus 228 lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 228 LLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred EEEEEccCCCCccceEEEEEEE
Confidence 77642 134456666443
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.66 E-value=0.48 Score=26.24 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=28.3
Q ss_pred CCCcEEEEec-CCCeEEEEEecCCeEEEEeecCCceeeEEEe
Q 012712 353 PKCEYVVSGS-DCGRIFIWKKKGGELIRVIEADRHVVNCIEP 393 (458)
Q Consensus 353 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 393 (458)
|++++|+++. .+++|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677666654 5789999999999888887653 33445554
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=7 Score=37.37 Aligned_cols=180 Identities=11% Similarity=0.113 Sum_probs=88.2
Q ss_pred cEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeec
Q 012712 21 LVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFH 100 (458)
Q Consensus 21 ~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 100 (458)
.|+|+++. |+++.+ +.-..+.+-.+.|+.+.. |++...+|++.+|++.. +.+....
T Consensus 65 ~I~If~~s-G~lL~~---------------------~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~s 120 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGR---------------------ILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNS 120 (829)
T ss_pred eEEEEecc-ccchHH---------------------HHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccc
Confidence 37788877 776654 222233788999997665 66678999999999863 3222211
Q ss_pred ---cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC--eEEEEec-CCCe
Q 012712 101 ---SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP--HVFYTCG-EDGL 174 (458)
Q Consensus 101 ---~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~s~~-~dg~ 174 (458)
......|..+.+.. +|-.+.+.+. ..+.+-+............+...-+-.|-...+++. ..++-.. ..+
T Consensus 121 vg~e~~~~~I~ec~~f~--~GVavlt~~g-~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~- 196 (829)
T KOG2280|consen 121 VGFESQMSDIVECRFFH--NGVAVLTVSG-QVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG- 196 (829)
T ss_pred cccccccCceeEEEEec--CceEEEecCC-cEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-
Confidence 11233455666655 6644444442 223333333222111111111111212222222221 1111111 111
Q ss_pred EEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 175 VQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 175 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
..+....... .+...... ....+..+..||. ..+|+--...|.|.+-+....+.
T Consensus 197 ~~~~q~~~~~-~q~~~~~~--------~~~~~~ki~VS~n-~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 197 LHICQVEESR-VQLHALSW--------PNSSVVKISVSPN-RRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hcccceeccc-ccccccCC--------CCceEEEEEEcCC-cceEEEEecCCcEEEEecchhhh
Confidence 0111111111 11111000 1235778899996 68999889999999988776553
No 457
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.35 E-value=4.2 Score=34.02 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=92.7
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCC-cceeEEEEccCCCCeEEEEEcCCCcEEEeecccccc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHN-DNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGG 140 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~ 140 (458)
+.+..+.++ +++...+..+.-++|.|+.+.......-.-.. +--+++.. .|++...+..|.-+.+.|+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v----sGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV----SGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe----cCCEEEEeeccCcEEEEECCCCCC
Confidence 445566666 45666666777799999987765433311111 22233333 688888888677778899987765
Q ss_pred eeee-eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEE
Q 012712 141 VETK-LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLF 219 (458)
Q Consensus 141 ~~~~-~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 219 (458)
.... ...........++.+- +..+.+..|+-+.+.|+........+.... ....+.++..+++ ..++
T Consensus 161 P~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n--------~g~g~~sv~vsdn-r~y~ 228 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--------TGPGTYSVSVSDN-RAYL 228 (370)
T ss_pred ceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEe--------cCCceEEEEecCC-eeEE
Confidence 4321 1222333345666664 446677788889999998776544443221 1125778888875 3444
Q ss_pred EEecCCCeEEEEecCCCc
Q 012712 220 AVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~ 237 (458)
+.. +.-+.+-|....+
T Consensus 229 vvy--~egvlivd~s~~s 244 (370)
T COG5276 229 VVY--DEGVLIVDVSGPS 244 (370)
T ss_pred EEc--ccceEEEecCCCC
Confidence 433 3336677776543
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.30 E-value=5.3 Score=35.03 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=85.7
Q ss_pred CcceeEEEEccCCCCeEEEEEcCCCc------EEEeecccc----cce---eeeeccccc--------cceEEEEEcCCC
Q 012712 104 NDNVFQAKIMPFTDDRSIVTCAADGQ------VRHAQILER----GGV---ETKLLGKHQ--------GRAHKLAIEPGS 162 (458)
Q Consensus 104 ~~~i~~~~~~~~~~~~~l~s~~~dg~------i~vw~~~~~----~~~---~~~~~~~~~--------~~v~~~~~~~~~ 162 (458)
-+.+..+.+.| ++..+++.+.+|. +...++... ..+ ....+.... ....+|++.+++
T Consensus 19 ~GGlSgl~~~~--~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDP--DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred cCcEeeEEEeC--CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 35677888886 5555666666666 544444331 000 001111111 144578886666
Q ss_pred CeEEEEecCC------CeEEEEeCCCCCccceeeecccCCC-----CcceeecceEEEEECCCCCcEEEEecCC-----C
Q 012712 163 PHVFYTCGED------GLVQHFDLRTGAATELFTCRPIDDR-----RNYMTVVNLNAIAIDPRNANLFAVAGSD-----E 226 (458)
Q Consensus 163 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g 226 (458)
.++++.-.+ ..|..++.. ++....+..+..... .+......+.+|+++|+ +..|+++.+. +
T Consensus 97 -~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~d-G~~l~~~~E~~l~~d~ 173 (326)
T PF13449_consen 97 -SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPD-GRTLFAAMESPLKQDG 173 (326)
T ss_pred -CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCC-CCEEEEEECccccCCC
Confidence 667776666 788888877 666555543322100 23335567899999998 5655544322 1
Q ss_pred ---------eEEE--EecCCCc-cCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEE
Q 012712 227 ---------YTRL--YDIRKYK-WDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVS 278 (458)
Q Consensus 227 ---------~i~i--~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (458)
.+++ ||..+.. ....+.+... ..........+..+.+.+++++|+.
T Consensus 174 ~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld------~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 174 PRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD------PPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccccCceEEEEEecCCCCCccceEEEEeCC------ccccccCCCCceeEEEECCCcEEEE
Confidence 1444 4444311 1111111000 0000003567888999999988775
No 459
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=93.18 E-value=9.8 Score=37.82 Aligned_cols=81 Identities=20% Similarity=0.047 Sum_probs=48.3
Q ss_pred cceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCc-cCCCCCC---CcCCCccccccccceeEEEeCCCCcEEEEe
Q 012712 204 VNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGST-DFGQPAD---YFCPPNLIGDEQVGITGLAFSDQSELLVSY 279 (458)
Q Consensus 204 ~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (458)
..|.++....- +..++....||+|.++|..+.+..... ..+.+.. ......+.-.....+..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 45667776665 568899999999999999988765544 1111111 100011111112255678999998877766
Q ss_pred c-CCcEE
Q 012712 280 N-DEFIY 285 (458)
Q Consensus 280 ~-~~~i~ 285 (458)
. ++.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 6 45543
No 460
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.12 E-value=10 Score=37.86 Aligned_cols=88 Identities=14% Similarity=0.202 Sum_probs=57.0
Q ss_pred ecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc-c-cccccceeEEEeCCCCcEEEEec
Q 012712 203 VVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-I-GDEQVGITGLAFSDQSELLVSYN 280 (458)
Q Consensus 203 ~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~ 280 (458)
..+...++|+|.+...||+....|...||++..........+...... . ..+ . ......-..+.|.++-..|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~-~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNI-S-GSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCC-C-ccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 335678999998788999999999999999932221111000000000 0 011 0 11123455888999988899999
Q ss_pred CCcEEEEEccCC
Q 012712 281 DEFIYLFTQDMG 292 (458)
Q Consensus 281 ~~~i~i~~~~~~ 292 (458)
...+.++|+.+.
T Consensus 223 r~~l~~~d~~~~ 234 (765)
T PF10214_consen 223 RSKLMLIDFESN 234 (765)
T ss_pred CCceEEEECCCC
Confidence 999999999874
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.95 E-value=2 Score=38.76 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=44.2
Q ss_pred CCCcEEEEecCCCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEeecCCcEEEecC
Q 012712 353 PKCEYVVSGSDCGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSGIESDIKILTP 414 (458)
Q Consensus 353 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw~~ 414 (458)
....|+|.|+..|-|++||.-.-.....+.+-...|..+..+.+|+++++.+. ..+.+-|+
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 34559999999999999997444444456667778999999999998766553 34545444
No 462
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.80 E-value=0.19 Score=48.05 Aligned_cols=121 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred CceEEEEEec---CCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEE-----------EccCCCCeEEEEEcCC
Q 012712 62 GCVNTVSFNT---DGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAK-----------IMPFTDDRSIVTCAAD 127 (458)
Q Consensus 62 ~~v~~~~~s~---~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~-----------~~~~~~~~~l~s~~~d 127 (458)
..+.-+.|.| +.-++..+-.++.|++-...+... .+..+|...+..++ .+| ||..++.++.|
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSp--DGtv~a~a~~d 256 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSP--DGTVFAWAISD 256 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCC--CCcEEEEeecC
Confidence 4445555554 556677777788888877654433 22345776665554 477 99999999999
Q ss_pred CcEEEeecccccc-e--eeeeccccc-cceEEEEEcCCC-------C-eEEEEec-CCCeEEEEeCCCCCcc
Q 012712 128 GQVRHAQILERGG-V--ETKLLGKHQ-GRAHKLAIEPGS-------P-HVFYTCG-EDGLVQHFDLRTGAAT 186 (458)
Q Consensus 128 g~i~vw~~~~~~~-~--~~~~~~~~~-~~v~~~~~~~~~-------~-~~l~s~~-~dg~i~iwd~~~~~~~ 186 (458)
|.++.|.+--... . ..+..+.|+ .+-.|.-++.+. . .++++++ .+..+++|.....++.
T Consensus 257 G~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 257 GSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999887642211 1 112244455 222222233221 0 1233333 3456888876655554
No 463
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.51 E-value=0.47 Score=25.84 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=19.6
Q ss_pred cccccEEEEEEecCCcEEEee-ecC--CceEEE
Q 012712 424 TNIEQVCFSIYSADYWWSKSQ-NFS--CSILLF 453 (458)
Q Consensus 424 ~~~~~v~~~~~s~d~~~l~s~-~~d--~~i~~w 453 (458)
.....-...+|||||++|+.. ..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344467789999999887754 444 666666
No 464
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.00 E-value=0.03 Score=49.32 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=93.7
Q ss_pred eEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEE-EEcCCCcEEEeeccccccee
Q 012712 64 VNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIV-TCAADGQVRHAQILERGGVE 142 (458)
Q Consensus 64 v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-s~~~dg~i~vw~~~~~~~~~ 142 (458)
-....|-|.+.-++.++.+..+..||-. ++..... ..++....++|.. ++..++ .+-..+.+.+|++.+....+
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHH
Confidence 3455677777668888888889999944 4443433 3456677888987 666654 45567899999997654322
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCcEEEEe
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVA 222 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 222 (458)
...-..|.... +.|++.. ..++.+...|.+.+++..+.+....... +..++.++++.+. .+.+.+
T Consensus 112 LE~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gk----------h~RRgtq~av~lE--d~vil~ 176 (615)
T KOG2247|consen 112 LESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGK----------HQRRGTQIAVTLE--DYVILC 176 (615)
T ss_pred HhccCcchHHH--HhhccCC-ccccccccccceEEEeccchhhhhhhcc----------cccceeEEEeccc--ceeeec
Confidence 11111222222 7788877 4567788889999999887665443321 3336788899886 356666
Q ss_pred cCCCe
Q 012712 223 GSDEY 227 (458)
Q Consensus 223 ~~dg~ 227 (458)
+.|..
T Consensus 177 dcd~~ 181 (615)
T KOG2247|consen 177 DCDNT 181 (615)
T ss_pred CcHHH
Confidence 55543
No 465
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=3.9 Score=41.60 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=87.1
Q ss_pred CCCCCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEE--------ecCCCE
Q 012712 4 ASNNNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSF--------NTDGDI 75 (458)
Q Consensus 4 ~~~~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------s~~~~~ 75 (458)
-.||.-++.-+|- |..+.+|+++++.-.. .+.+-...|..+.. -|.=++
T Consensus 85 GiFpeI~RaWiTi--Dn~L~lWny~~~~e~~---------------------~~d~~shtIl~V~LvkPkpgvFv~~Iqh 141 (1311)
T KOG1900|consen 85 GIFPEIGRAWITI--DNNLFLWNYESDNELA---------------------EYDGLSHTILKVGLVKPKPGVFVPEIQH 141 (1311)
T ss_pred ccchhhcceEEEe--CCeEEEEEcCCCCccc---------------------cccchhhhheeeeeecCCCCcchhhhhe
Confidence 4566666665554 7789999999855442 24444555555543 223344
Q ss_pred EEEecCCCeEEEEECCCccee---eeec-----cCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecc----cc---c-
Q 012712 76 LISGSDDRRVILWDWKTERVK---LSFH-----SGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQIL----ER---G- 139 (458)
Q Consensus 76 l~s~~~d~~i~iwd~~~~~~~---~~~~-----~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~----~~---~- 139 (458)
|+.-+.--.|.++-+...+.. ..+. ......|.++.... +|+.+++ |.|| .+|.+. ++ +
T Consensus 142 lLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~--nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~r 216 (1311)
T KOG1900|consen 142 LLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTE--NGRIFFA-GRDG--NLYELVYQAEDGWFGSR 216 (1311)
T ss_pred eEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEecc--CCcEEEe-ecCC--CEEEEEEeccCchhhcc
Confidence 444444455666654322211 1110 11245678888665 6665555 4556 455442 11 0
Q ss_pred c-------------ee-eeecc-ccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCC
Q 012712 140 G-------------VE-TKLLG-KHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRT 182 (458)
Q Consensus 140 ~-------------~~-~~~~~-~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 182 (458)
+ ++ ...+. .+..+|..+...... .++++-+..|+|.+||+..
T Consensus 217 c~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 217 CRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 0 00 00122 567799999998877 7899999999999999976
No 466
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=5.4 Score=31.52 Aligned_cols=110 Identities=9% Similarity=0.090 Sum_probs=62.7
Q ss_pred EEEEccCCCCeEEEEEcC--CCcEEEeecccccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc
Q 012712 109 QAKIMPFTDDRSIVTCAA--DGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT 186 (458)
Q Consensus 109 ~~~~~~~~~~~~l~s~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 186 (458)
.+.+. ++.++.+.+. ...|++||+.+++......+.. ..+..=-...-+..+..-.-.+|.-..+|.++-+..
T Consensus 50 GL~~~---~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~l 124 (262)
T COG3823 50 GLEYL---DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEEL 124 (262)
T ss_pred ceeee---CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhh
Confidence 44554 6677777665 3469999999888776554441 122111111223234444556788888888887776
Q ss_pred ceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCc
Q 012712 187 ELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
..+.. .+.-..++-.. ..++.+....+++.-|.++..
T Consensus 125 g~~~y-----------~GeGWgLt~d~---~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 125 GRFSY-----------EGEGWGLTSDD---KNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ccccc-----------CCcceeeecCC---cceEeeCCceEEEecCHHHhh
Confidence 66652 22334554432 335555555567776666543
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.73 E-value=2.2 Score=33.16 Aligned_cols=28 Identities=14% Similarity=0.006 Sum_probs=24.5
Q ss_pred cEEEEEEecCC------cEEEeeecCCceEEEEE
Q 012712 428 QVCFSIYSADY------WWSKSQNFSCSILLFEW 455 (458)
Q Consensus 428 ~v~~~~~s~d~------~~l~s~~~d~~i~~w~~ 455 (458)
.+.+++|||-| -+||.-+.++.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence 69999999977 67889999999999963
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.68 E-value=2.5 Score=35.77 Aligned_cols=92 Identities=10% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCeEEEEEecCCeEEEEeecCCceeeEEEecCCCCeEEEee------cCCcEEEecCCcccccccccc-----cccEEEE
Q 012712 364 CGRIFIWKKKGGELIRVIEADRHVVNCIEPHPHSTVLASSG------IESDIKILTPNAADRATLPTN-----IEQVCFS 432 (458)
Q Consensus 364 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~d~~i~iw~~~~~~~~~~~~~-----~~~v~~~ 432 (458)
-..|.+||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||..+.....+... .++|..+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 35689999876655544445567899999997777777764 356788999988876555442 3668777
Q ss_pred EEec-CC-cEEEeee-cCCceEEEEE
Q 012712 433 IYSA-DY-WWSKSQN-FSCSILLFEW 455 (458)
Q Consensus 433 ~~s~-d~-~~l~s~~-~d~~i~~w~~ 455 (458)
.+.. |+ ++.+.|. .++.-.|..|
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~ 120 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKY 120 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEE
Confidence 7743 33 3333433 4555444433
No 469
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.67 E-value=7.5 Score=35.46 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=19.6
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEe
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHA 133 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw 133 (458)
.|..+..++ .|..++-+|.+|.+.++
T Consensus 105 eV~~vl~s~--~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSP--TGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecC--CCceEEEecCCeeEEEE
Confidence 466777788 88888888888866554
No 470
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.35 E-value=10 Score=38.92 Aligned_cols=33 Identities=9% Similarity=0.238 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCEEEEecCCCeEEEEECCCcc
Q 012712 62 GCVNTVSFNTDGDILISGSDDRRVILWDWKTER 94 (458)
Q Consensus 62 ~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~ 94 (458)
.....++|+|...++|.+...|.|+++-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 456688999999999999999999999865433
No 471
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=91.32 E-value=9 Score=33.15 Aligned_cols=61 Identities=11% Similarity=0.208 Sum_probs=40.4
Q ss_pred CCCEEEEecCCCeEEEEECCCc-ceeeeeccCCCcceeEEEEccCCCCeEEEEEc-CCCcEEEeeccc
Q 012712 72 DGDILISGSDDRRVILWDWKTE-RVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCA-ADGQVRHAQILE 137 (458)
Q Consensus 72 ~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~-~dg~i~vw~~~~ 137 (458)
++++|+.|..+| +.+-++... .....+ .+...|+++...+ .-+.|++-+ ....++++++..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~--~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLE--ENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEh--hhCEEEEEeCCcceEEEEEHHH
Confidence 346899999998 555555542 222222 3567899999998 666666544 344599999844
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.28 E-value=8.3 Score=32.66 Aligned_cols=247 Identities=13% Similarity=0.101 Sum_probs=125.9
Q ss_pred ceEEEEEcCCCCeEEEEecCCCeEEEEeCCCC----Cccc-eeeecccCCCCcceeecceEEEEECCCC-----------
Q 012712 152 RAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTG----AATE-LFTCRPIDDRRNYMTVVNLNAIAIDPRN----------- 215 (458)
Q Consensus 152 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~----------- 215 (458)
.-+.|+++|.+ .+-++....+...+||.... .... ....+... +.......+.+.|+...
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~---~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP---PLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCC---CCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 45789999988 56677667788999998611 1111 11111100 10122345666666431
Q ss_pred CcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcccc-cc-ccceeEEEeCCC--CcEEEEec--CCcEEEEEc
Q 012712 216 ANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIG-DE-QVGITGLAFSDQ--SELLVSYN--DEFIYLFTQ 289 (458)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~--~~~l~~~~--~~~i~i~~~ 289 (458)
...++.+++||+|.-|...-....-. ....... .. ..--..+++... +.+|.... .++|.+||-
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~----------~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT----------RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc----------ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 13467788999999998543221000 0000111 11 122344555433 45665555 557888875
Q ss_pred cCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccceeeeeEEEEecCCCcEEEEecCCCeEEE
Q 012712 290 DMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFI 369 (458)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~i 369 (458)
.-.+....-... ...... .-....+..-.....|+-..- .++++.=+.|..-|.|-+
T Consensus 170 ~f~~~~~~g~F~--DP~iPa--------------------gyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 170 SFRPPPLPGSFI--DPALPA--------------------GYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV 226 (336)
T ss_pred ccccccCCCCcc--CCCCCC--------------------CCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence 443211100000 000000 000000111111111222222 444444455556689999
Q ss_pred EEecCCeEEEEee--cCCceeeEEEecC------CCCeEEEeecCCcEEEecCCccccc-ccccccc------cEEEEEE
Q 012712 370 WKKKGGELIRVIE--ADRHVVNCIEPHP------HSTVLASSGIESDIKILTPNAADRA-TLPTNIE------QVCFSIY 434 (458)
Q Consensus 370 wd~~~~~~~~~~~--~~~~~v~~~~~s~------~~~~l~s~~~d~~i~iw~~~~~~~~-~~~~~~~------~v~~~~~ 434 (458)
||+ .|..++++. +.-...+.|+..| .+.+|+---.||+|..+|..+++.+ .+....+ ..+.++|
T Consensus 227 Fd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~f 305 (336)
T TIGR03118 227 FTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTF 305 (336)
T ss_pred EcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeee
Confidence 998 788888874 2234567777765 3566766566999999999877644 3333222 3778888
Q ss_pred ec
Q 012712 435 SA 436 (458)
Q Consensus 435 s~ 436 (458)
-.
T Consensus 306 Gn 307 (336)
T TIGR03118 306 GN 307 (336)
T ss_pred CC
Confidence 65
No 473
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.27 E-value=6.5 Score=31.40 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=79.2
Q ss_pred CEEEEecCCCeEEEEECCC--cceeeeeccCCCcceeEEEEccCCCCeEEEEEcCC---C---cEEEe---ecc--cccc
Q 012712 74 DILISGSDDRRVILWDWKT--ERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAAD---G---QVRHA---QIL--ERGG 140 (458)
Q Consensus 74 ~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~d---g---~i~vw---~~~--~~~~ 140 (458)
+.|..+...+.|.+|++.. .+...++ .--+.|..+.++. .|++|+|-=.+ . .+|+| ... ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 3444435557899999983 3344555 3348899999999 99999985432 2 45553 222 1111
Q ss_pred eeeeeccc---------------------cccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc-cceeeeccc-CCC
Q 012712 141 VETKLLGK---------------------HQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA-TELFTCRPI-DDR 197 (458)
Q Consensus 141 ~~~~~~~~---------------------~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~~~ 197 (458)
+..+ +-+ -..++.+++..|..+++++ |+ ++.+.+|.+..... ...+..... ...
T Consensus 105 v~vR-iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l 181 (215)
T PF14761_consen 105 VRVR-IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSL 181 (215)
T ss_pred EEEE-EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhh
Confidence 1111 111 1345677888886656544 43 36788887764433 111111111 011
Q ss_pred CcceeecceEEEEECCCCCcEEEEecCCCeEEEEec
Q 012712 198 RNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDI 233 (458)
Q Consensus 198 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~ 233 (458)
-.|.....+..+++.. .++|..+. -.++++.+
T Consensus 182 ~~~~~~~~p~~v~ic~---~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 182 IDHIDNFKPTQVAICE---GYIAVMSD-LEVLVLKL 213 (215)
T ss_pred hheecCceEEEEEEEe---eEEEEecC-CEEEEEEE
Confidence 1122233456677763 47776654 45666554
No 474
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.18 E-value=18 Score=36.27 Aligned_cols=124 Identities=12% Similarity=0.047 Sum_probs=74.0
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc--ceeeecccCCCCcce-----eecceEEEEECCCCCcEEEEec
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT--ELFTCRPIDDRRNYM-----TVVNLNAIAIDPRNANLFAVAG 223 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~ 223 (458)
.+...++|+|.....||.....|...+|++...... ..+.... ...++. ....-..+.|.++ .+.|++++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~--~~~gsi~~d~~e~s~w~rI~W~~~-~~~lLv~~ 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSR--NISGSIIFDPEELSNWKRILWVSD-SNRLLVCN 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeecc--CCCccccCCCcccCcceeeEecCC-CCEEEEEc
Confidence 466789999988788999999999999999222111 1111110 000110 1123457888876 56666666
Q ss_pred CCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCC-cEEEEecCCcEEEEEccC
Q 012712 224 SDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQS-ELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~i~i~~~~~ 291 (458)
. ..+.++|+.+...... .........|..+.-+|.. .++..-+...|...++..
T Consensus 223 r-~~l~~~d~~~~~~~~~-------------l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 223 R-SKLMLIDFESNWQTEY-------------LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred C-CceEEEECCCCCccch-------------hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 5 4689999987653110 1122234678888888872 233333456677777765
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.04 E-value=4.6 Score=29.35 Aligned_cols=113 Identities=10% Similarity=0.108 Sum_probs=68.7
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCccee-------eeeccCCCcceeEEEEccC---CCCeEEEEEcCCCcEEEeec
Q 012712 66 TVSFNTDGDILISGSDDRRVILWDWKTERVK-------LSFHSGHNDNVFQAKIMPF---TDDRSIVTCAADGQVRHAQI 135 (458)
Q Consensus 66 ~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~i~~~~~~~~---~~~~~l~s~~~dg~i~vw~~ 135 (458)
.-+|......|+.++.-+.|.|++....... .+++ .-...|++++-.+. .+...|+.|+. ..+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3456555667888888899999987643221 1221 23457777775553 24556777765 57999999
Q ss_pred ccccceeeeeccccccceEEEEEcC---CCCeEEEEecCCCeEEEEeCCCCC
Q 012712 136 LERGGVETKLLGKHQGRAHKLAIEP---GSPHVFYTCGEDGLVQHFDLRTGA 184 (458)
Q Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~ 184 (458)
..+..+.. +.-.+.++++.+-. ....+++ .+-+..|.-||.+..+
T Consensus 81 ~~N~d~Fy---ke~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNSDLFY---KEVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEGNE 128 (136)
T ss_pred ccCchhhh---hhCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCCcE
Confidence 98877653 33446677776632 1223444 4445677777765444
No 476
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.79 E-value=0.028 Score=49.49 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=72.9
Q ss_pred CCceEEEEEecCCCEEEE-ecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccccc
Q 012712 61 RGCVNTVSFNTDGDILIS-GSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERG 139 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~ 139 (458)
++....++|..++..++. +-..+.+.+||+.+... .++..+-+..-.-+.|++ ....++.+-..|.+.+++-.+.+
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgtsR 150 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTSR 150 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc--CCccccccccccceEEEeccchh
Confidence 455667888888865554 45568899999976543 222122222222278998 88888888889999999987776
Q ss_pred ceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712 140 GVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (458)
Q Consensus 140 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 173 (458)
.... ...|...++++++.+.+ . .+.++.|.
T Consensus 151 ~iiv--~Gkh~RRgtq~av~lEd-~-vil~dcd~ 180 (615)
T KOG2247|consen 151 RIIV--MGKHQRRGTQIAVTLED-Y-VILCDCDN 180 (615)
T ss_pred hhhh--hcccccceeEEEecccc-e-eeecCcHH
Confidence 6553 44599999999999987 3 44454443
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.75 E-value=8.3 Score=35.07 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=86.3
Q ss_pred CCeEEEE-EcCCCcEEEeecccccceeeeeccccccceEEEEEcCCCC------eEEEEecCCCeEEEEeCCCCC-ccce
Q 012712 117 DDRSIVT-CAADGQVRHAQILERGGVETKLLGKHQGRAHKLAIEPGSP------HVFYTCGEDGLVQHFDLRTGA-ATEL 188 (458)
Q Consensus 117 ~~~~l~s-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~s~~~dg~i~iwd~~~~~-~~~~ 188 (458)
+.++|+. ++....+.--|++.++.+.. ..-|... -+.|.|... ..-+.|-.+..|.-.|.+... .+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvvee--W~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEE--WDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeE--eecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 5555544 34445566666666666554 3334433 466666431 112334445556666665432 2222
Q ss_pred eeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEE
Q 012712 189 FTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLA 268 (458)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (458)
..... +.......+..-... .++++++..|.|++||.-..+ .....++-...|..+.
T Consensus 554 ~esKd------Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r---------------AKtalP~lG~aIk~id 610 (776)
T COG5167 554 VESKD------YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR---------------AKTALPGLGDAIKHID 610 (776)
T ss_pred eeehh------ccccccccccccccC--ceEEEecCCCceeeehhhcch---------------hhhcCcccccceeeeE
Confidence 11111 112223344444433 499999999999999964432 1233444456789999
Q ss_pred eCCCCcEEEEecCCcEEEEEccC
Q 012712 269 FSDQSELLVSYNDEFIYLFTQDM 291 (458)
Q Consensus 269 ~~~~~~~l~~~~~~~i~i~~~~~ 291 (458)
.+.+|+++.+.+...+.+.|+.-
T Consensus 611 vta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 611 VTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eecCCcEEEEeecceEEEEeccc
Confidence 99999999999999999988764
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.43 E-value=1.4 Score=24.33 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCCeEEEEecCCCeEEEEeCCCCCccceee
Q 012712 160 PGSPHVFYTCGEDGLVQHFDLRTGAATELFT 190 (458)
Q Consensus 160 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 190 (458)
|+++.++++...++.|.++|..+++....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5665666666678899999998877665554
No 479
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.28 E-value=28 Score=37.13 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=84.0
Q ss_pred cCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 59 KHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 59 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.|-..++.|.-+++|..+=. .|+.++.||.....-.. ....-...+..+.-.- ||+..+ -+.+ .+-|+..+
T Consensus 360 aH~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~~Wk~-~~~~~d~~~S~Ls~qg--dG~lYA-k~~~---~l~nLSs~ 430 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTARWKP-PPDKSDTPFSSLSRQG--DGKLYA-KDDD---TLVNLSSG 430 (1774)
T ss_pred HHHHHhhccccCCCCCeEEe--ecCceeeeccccceecC-CCCcccchhhhhcccC--CCceEe-cCCC---ceeecCCC
Confidence 45566677777777765543 35567777765443210 1011223344444433 555444 2211 13344443
Q ss_pred cceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCcc----ceeeecccCCCCcceeecceEEEEECCC
Q 012712 139 GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAAT----ELFTCRPIDDRRNYMTVVNLNAIAIDPR 214 (458)
Q Consensus 139 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 214 (458)
.... ..-..+.+...++++.--++++.....+.+|++....-. ..+...... ......++.++++
T Consensus 431 ~~~~-----~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d------G~a~A~~VgLs~d 499 (1774)
T PF11725_consen 431 QMSE-----AEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD------GKAQAQSVGLSND 499 (1774)
T ss_pred Ccch-----hhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccC------CchhhhheeecCC
Confidence 3211 122457778888998444666666667799988754211 111111110 1225678888875
Q ss_pred CCcEEEEecCCCeEEEEecCCCc
Q 012712 215 NANLFAVAGSDEYTRLYDIRKYK 237 (458)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~ 237 (458)
.|+++..+|.++.=++...+
T Consensus 500 ---rLFvADseGkLYsa~l~~~~ 519 (1774)
T PF11725_consen 500 ---RLFVADSEGKLYSADLPAAQ 519 (1774)
T ss_pred ---eEEEEeCCCCEEeccccccc
Confidence 57788899999888876554
No 480
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.18 E-value=1.4 Score=23.90 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=19.4
Q ss_pred cCCceeeEEEecCCCCeEEEeec-C--CcEEEe
Q 012712 383 ADRHVVNCIEPHPHSTVLASSGI-E--SDIKIL 412 (458)
Q Consensus 383 ~~~~~v~~~~~s~~~~~l~s~~~-d--~~i~iw 412 (458)
...+.-...+|||||+.|+-++. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455678899999998876554 4 555555
No 481
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=89.83 E-value=11 Score=31.89 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=68.8
Q ss_pred ceeEEEEccCCCCeEEEEEcCCCcEEEeeccc------ccceeeeeccc-----cccceEEEEEcCCC-----------C
Q 012712 106 NVFQAKIMPFTDDRSIVTCAADGQVRHAQILE------RGGVETKLLGK-----HQGRAHKLAIEPGS-----------P 163 (458)
Q Consensus 106 ~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~-----------~ 163 (458)
.-+.|+++| .+.+-++....+...+||... ...+. ..+.. .....+.+.|+... .
T Consensus 24 N~WGia~~p--~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~-vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRP--GGPFWVANTGTGTATLYVGNPDTQPLVQDPLV-VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecC--CCCEEEecCCcceEEeecCCcccccCCccceE-EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 457899999 888888877788999999861 21211 11221 12356677776432 2
Q ss_pred eEEEEecCCCeEEEEeCCCCCc---cceeeecccCCCCcceeecceEEEEECCC-CCcEEEEe-cCCCeEEEEecCCCc
Q 012712 164 HVFYTCGEDGLVQHFDLRTGAA---TELFTCRPIDDRRNYMTVVNLNAIAIDPR-NANLFAVA-GSDEYTRLYDIRKYK 237 (458)
Q Consensus 164 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~-~~dg~i~i~d~~~~~ 237 (458)
..++.+++||+|.-|...-... ...+..... . ...-...+++... ++.+|+.+ -..++|.+||-.-.+
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s--~----~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~ 173 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDAS--Q----QGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP 173 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccC--C----CcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence 2367789999999998543322 111111100 0 0111234444422 13444443 467889999876543
No 482
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.57 E-value=10 Score=31.31 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=71.9
Q ss_pred eEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcC-C--CcEEEeecccc----cceeeeeccccccceEEE
Q 012712 84 RVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAA-D--GQVRHAQILER----GGVETKLLGKHQGRAHKL 156 (458)
Q Consensus 84 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~-d--g~i~vw~~~~~----~~~~~~~~~~~~~~v~~~ 156 (458)
.-.+||+.+++..... .....-..+-.+.| ||++|.+|+. + ..+++++.... ........-.....--..
T Consensus 47 ~s~~yD~~tn~~rpl~-v~td~FCSgg~~L~--dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLT-VQTDTFCSGGAFLP--DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEecc-CCCCCcccCcCCCC--CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 3468998887653322 22222333345677 9999999876 2 35788876441 111100001122333345
Q ss_pred EEcCCCCeEEEEecCCC-eEEEEeCCCC-CccceeeecccCCCCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecC
Q 012712 157 AIEPGSPHVFYTCGEDG-LVQHFDLRTG-AATELFTCRPIDDRRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIR 234 (458)
Q Consensus 157 ~~~~~~~~~l~s~~~dg-~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~ 234 (458)
..-||| ++|+.|+... +..+|.-+.. .....+...... .......--.-+...|+ +++|+.+..+. .+||..
T Consensus 124 ~~L~DG-~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~--~~~~~~nlYP~~~llPd-G~lFi~an~~s--~i~d~~ 197 (243)
T PF07250_consen 124 TTLPDG-RVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQT--SDTLPNNLYPFVHLLPD-GNLFIFANRGS--IIYDYK 197 (243)
T ss_pred eECCCC-CEEEEeCcCCCcccccCCccCCCCceeeecchhh--hccCccccCceEEEcCC-CCEEEEEcCCc--EEEeCC
Confidence 566788 5666666553 4455544221 111111111000 00001111234566787 78888887654 566877
Q ss_pred CCcc
Q 012712 235 KYKW 238 (458)
Q Consensus 235 ~~~~ 238 (458)
+.+.
T Consensus 198 ~n~v 201 (243)
T PF07250_consen 198 TNTV 201 (243)
T ss_pred CCeE
Confidence 6653
No 483
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.55 E-value=16 Score=33.07 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=64.2
Q ss_pred ccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCcc
Q 012712 261 QVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHR 340 (458)
Q Consensus 261 ~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (458)
...+..+.+.+++.+++++..+.+.. ....+..... ..........
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~---------------------------------~~f~~~~~~~ 325 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEED---------------------------------FDFEEADIKS 325 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccc---------------------------------cceeecccCC
Confidence 45688999999999998887766544 2222210000 0011111111
Q ss_pred ceeeeeEEEEecCCCcEEEEecCCCeEEEEEecCCeEEEEee---cCCceeeEEEecCCCCeEEEeecCCcEEEe
Q 012712 341 NCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKGGELIRVIE---ADRHVVNCIEPHPHSTVLASSGIESDIKIL 412 (458)
Q Consensus 341 ~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~i~iw 412 (458)
....+..+.| .+++..+++| ..|.+.... ..|+.-...+ .-....+.+.|.++++-+++| .+|.|.-|
T Consensus 326 ~~~~l~~v~~-~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 326 RGFGILDVGY-RSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceEEEEE-cCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 1113778887 7777766555 577666553 3444433322 223568899998877766655 56776554
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.52 E-value=17 Score=33.40 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred eeEeecCCCceEEEEEecCCCEEEEecCCCeEEEEECCCcceeeeeccC------CCcceeEEEEccCCCC------eEE
Q 012712 54 YAKLDKHRGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVKLSFHSG------HNDNVFQAKIMPFTDD------RSI 121 (458)
Q Consensus 54 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~------~~l 121 (458)
+..+...-..-+.|+|.|||++|++--..|.|++++..++......... -.+....|+++| +- .+|
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P--dF~~~~~n~~l 99 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP--DFMQEKGNPYV 99 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC--CccccCCCcEE
Q ss_pred EEEc----------CCCcEEEeecccc-------cceeeeeccccccceEEEEEcCCCCeEEEEecCCC
Q 012712 122 VTCA----------ADGQVRHAQILER-------GGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDG 173 (458)
Q Consensus 122 ~s~~----------~dg~i~vw~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg 173 (458)
.... ....|.-|.+... +.+...........-..|.|.|++ .++++.+..+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG-~LYVs~GD~g 167 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG-KIYYTIGEQG 167 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC-cEEEEECCCC
No 485
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.07 E-value=2.8 Score=28.10 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=36.2
Q ss_pred EeecCCcEEEecCCcccccccccccccEEEEEEecCCcEEEeeecCCceEEEEE
Q 012712 402 SSGIESDIKILTPNAADRATLPTNIEQVCFSIYSADYWWSKSQNFSCSILLFEW 455 (458)
Q Consensus 402 s~~~d~~i~iw~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d~~i~~w~~ 455 (458)
.+..+|.+.-||+.+++...+...-.-.+.++.++|+.+++. ++-+.-+|++|
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv-~Et~~~Ri~ry 84 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLV-AETGRYRILRY 84 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEE-EEGGGTEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEE-EeccCceEEEE
Confidence 345578899999999987777666667889999999987755 34445555554
No 486
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.66 E-value=21 Score=33.37 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=57.7
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCcceeeeec-cCC-CcceeEEEEccCCCCeEEEEEc--------------CCCcE
Q 012712 67 VSFNTDGDILISGSDDRRVILWDWKTERVKLSFH-SGH-NDNVFQAKIMPFTDDRSIVTCA--------------ADGQV 130 (458)
Q Consensus 67 ~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~~~i~~~~~~~~~~~~~l~s~~--------------~dg~i 130 (458)
+...++|.+++..+ ..+..+|+. |+.+.... ... ..-=..+...| +|++|+.+. .|. |
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~~~~~~~~~~~~~~~~D~-I 226 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP--NGNLLILASETKYVDEDKDVDTVEDV-I 226 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEEETTEE-TS-EE---S-E-E
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC--CCCEEEEEeecccccCCCCccEecCE-E
Confidence 66678898887655 678888875 44433331 110 01123566777 888887766 122 2
Q ss_pred EEeecccccceeeeecccc-------------------------ccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc
Q 012712 131 RHAQILERGGVETKLLGKH-------------------------QGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA 185 (458)
Q Consensus 131 ~vw~~~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 185 (458)
...| .+++.+....+..| ---++++.+.+....+++++-.-..|...|.++++.
T Consensus 227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 2233 33322211111110 024788999995547777777777898999888877
Q ss_pred cceee
Q 012712 186 TELFT 190 (458)
Q Consensus 186 ~~~~~ 190 (458)
...+.
T Consensus 306 ~Wilg 310 (477)
T PF05935_consen 306 KWILG 310 (477)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 66554
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.54 E-value=3.4 Score=39.84 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=88.7
Q ss_pred eEEEEEcCCCcEEEeecccccc--eeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCC
Q 012712 119 RSIVTCAADGQVRHAQILERGG--VETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDD 196 (458)
Q Consensus 119 ~~l~s~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 196 (458)
..+..++.++.|.++.-..+.. ............+.++.+++.. +..|.-||++-.+--. .... ....+ .
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S---lgagl~dgt~a~y~ra-p~gS--wd~ep--~ 619 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS---LGAGLIDGTLAVYGRA-PSGS--WDGEP--N 619 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc---cccCccCCccccccCC-CCCC--CCCCC--c
Confidence 4577888889999887652221 1111122233456667776643 5666666665544211 1000 00000 0
Q ss_pred CCcceeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEE
Q 012712 197 RRNYMTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELL 276 (458)
Q Consensus 197 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (458)
..-+....++.+.++..| ++.++.+|.|.++...+...... ......+...|+++.+..+|-++
T Consensus 620 ~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~------------leahqee~~~Vthm~~~~~gVwv 683 (925)
T KOG3522|consen 620 ISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWD------------LEAHQEEAHSVTHMLYLDNGVWV 683 (925)
T ss_pred cccccCCccccchhhhhc----eeeeecCCceEEEechhccccch------------hHHHHhhcceEEEEEeeCCceEE
Confidence 000114446788887754 55577889999999877643322 12233455689999999999888
Q ss_pred EEecCCcEEEEEccCCC
Q 012712 277 VSYNDEFIYLFTQDMGL 293 (458)
Q Consensus 277 ~~~~~~~i~i~~~~~~~ 293 (458)
+..+.+.+++++..+-.
T Consensus 684 afasG~~~rlfhtetl~ 700 (925)
T KOG3522|consen 684 AFASGDEERLFHTETLW 700 (925)
T ss_pred EEcCCCEEEEecccccC
Confidence 88888888888766543
No 488
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.46 E-value=22 Score=33.28 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=71.8
Q ss_pred EEEEe---cCCCeEEEEECCCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccccceeeeeccccc-
Q 012712 75 ILISG---SDDRRVILWDWKTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILERGGVETKLLGKHQ- 150 (458)
Q Consensus 75 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~~~~~~~~~~~~~- 150 (458)
++++. .......+.|.. |.....+. ........+...+ +|.+++... ..+..+|+. ++......+....
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~-~~~~~~~~~~~l~--nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLP-LDSGSDNSFKQLP--NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEETT--BEEEEEEEETT-S-EEEEE--GGGT--SSEEE-T--TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEeCCCCCCCceEEEECCC-ccEEEEEc-cCccccceeeEcC--CCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 44544 234556666643 44433331 1111111155667 888887666 677888874 4443333343311
Q ss_pred cceEEEEEcCCCCeEEEEecC-------------CCeEEEEeCCCCCccceeeecccCCC-----------------Ccc
Q 012712 151 GRAHKLAIEPGSPHVFYTCGE-------------DGLVQHFDLRTGAATELFTCRPIDDR-----------------RNY 200 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~ 200 (458)
..=..+...|+| ++|+.+.. +-.|..+| .+|+.+..+........ ...
T Consensus 190 ~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 190 DFHHDIDELPNG-NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp -B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred ccccccEECCCC-CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 122457778888 55665551 12355666 67766655544332210 011
Q ss_pred eeecceEEEEECCCCCcEEEEecCCCeEEEEecCCCcc
Q 012712 201 MTVVNLNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKW 238 (458)
Q Consensus 201 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~ 238 (458)
..-..++++.+.+.++.+++++-.-..|...|.++++.
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i 305 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKI 305 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-E
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcE
Confidence 12235789999996566777766666888888777664
No 489
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=14 Score=38.02 Aligned_cols=186 Identities=9% Similarity=0.110 Sum_probs=90.5
Q ss_pred cceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEE--------ECCCCCcEEEEe
Q 012712 151 GRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIA--------IDPRNANLFAVA 222 (458)
Q Consensus 151 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~ 222 (458)
..-..+-+-|.=...- .+-|+.+.+|+.+++.....+... ...|..+. |-|. =+++++-
T Consensus 79 ~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~----------shtIl~V~LvkPkpgvFv~~-IqhlLvv 145 (1311)
T KOG1900|consen 79 ECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGL----------SHTILKVGLVKPKPGVFVPE-IQHLLVV 145 (1311)
T ss_pred ceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccch----------hhhheeeeeecCCCCcchhh-hheeEEe
Confidence 3334455555432323 345788999999986655444321 11222222 2332 1233333
Q ss_pred cCCCeEEEEecCCCccCCCccCCCCCCCcCCCccccccccceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCC
Q 012712 223 GSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNLIGDEQVGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSP 302 (458)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~ 302 (458)
+.--.|.++-+.-.+...... .+...-...-....|+++....+|+.+.+|.+|.++-.-.........-..+.
T Consensus 146 aT~~ei~ilgV~~~~~~~~~~------~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~K 219 (1311)
T KOG1900|consen 146 ATPVEIVILGVSFDEFTGELS------IFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRK 219 (1311)
T ss_pred cccceEEEEEEEeccccCccc------ccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhccccc
Confidence 334456666554332211100 00000111123467899999999999999999965533222211100000000
Q ss_pred ccccccccccCCCCccccCCCCCCcccccCceeec-CccceeeeeEEEEecCCCcEEEEecCCCeEEEEEecC
Q 012712 303 VSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYK-GHRNCVTVKGVNFFGPKCEYVVSGSDCGRIFIWKKKG 374 (458)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 374 (458)
..... ..+... .+..-.+. .+.. +|..+.. +..-+.+++-++.|+|.+|++..
T Consensus 220 iclt~---------s~ls~l-------vPs~~~~~~~~~d--pI~qi~I-D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 220 ICLTK---------SVLSSL-------VPSLLSVPGSSKD--PIRQITI-DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccCch---------hHHHHh-------hhhhhcCCCCCCC--cceeeEe-ccccceeeeeccCceEEEEEccC
Confidence 00000 000000 00011111 3333 4888887 77788999999999999999965
No 490
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.27 E-value=14 Score=33.85 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=24.5
Q ss_pred ceEEEEECCCCCcEEEEecCCCeEEEEecCC
Q 012712 205 NLNAIAIDPRNANLFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 205 ~v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~ 235 (458)
.+.+++..+. .+.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence 4889999987 58999999999999999975
No 491
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.13 E-value=18 Score=32.11 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=101.8
Q ss_pred CCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEe----cCCCE--EEEecC
Q 012712 8 NNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFN----TDGDI--LISGSD 81 (458)
Q Consensus 8 ~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~--l~s~~~ 81 (458)
|...+++....++-+.+||++ |+.+.. +. .+..+.+..- -.|+. ||.++.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~---------------------~~--~Gr~NNVDvrygf~l~g~~vDlavas~ 121 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQS---------------------LP--VGRPNNVDVRYGFPLNGKTVDLAVASD 121 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEE---------------------E---SS-EEEEEEEEEEEETTEEEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEe---------------------ec--CCCcceeeeecceecCCceEEEEEEec
Confidence 455678888888999999999 776633 11 1233333221 13332 344432
Q ss_pred -C---CeEEEEECCC--cceeeeecc------CCCcceeEEEEccC-CCCe-EEEEEcCCCcEEEeecccccc--e---e
Q 012712 82 -D---RRVILWDWKT--ERVKLSFHS------GHNDNVFQAKIMPF-TDDR-SIVTCAADGQVRHAQILERGG--V---E 142 (458)
Q Consensus 82 -d---~~i~iwd~~~--~~~~~~~~~------~~~~~i~~~~~~~~-~~~~-~l~s~~~dg~i~vw~~~~~~~--~---~ 142 (458)
+ ..|++|.++. +. +..+.. .-...++.+|.-.. .++. +.+....+|.+..|.+..... + .
T Consensus 122 R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l 200 (381)
T PF02333_consen 122 RSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL 200 (381)
T ss_dssp -CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE
T ss_pred CcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE
Confidence 1 4699997753 32 222210 11134677776421 1344 555677789999888863221 1 1
Q ss_pred eeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCc--cceeeecccCCCCcceeecceEEEEEC--CCC-Cc
Q 012712 143 TKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAA--TELFTCRPIDDRRNYMTVVNLNAIAID--PRN-AN 217 (458)
Q Consensus 143 ~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~-~~ 217 (458)
.+.+. -...+..|...... ..|+.+-++.-|.-|+.+.... ...+...... . ....+..|++- +++ +.
T Consensus 201 VR~f~-~~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~---~--l~aDvEGlaly~~~~g~gY 273 (381)
T PF02333_consen 201 VREFK-VGSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD---G--LVADVEGLALYYGSDGKGY 273 (381)
T ss_dssp EEEEE--SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS---S--B-S-EEEEEEEE-CCC-EE
T ss_pred EEEec-CCCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeeccccc---c--cccCccceEEEecCCCCeE
Confidence 12232 23477888888776 5688888888888888763322 1222111110 0 22345566553 332 34
Q ss_pred EEEEecCCCeEEEEecCC
Q 012712 218 LFAVAGSDEYTRLYDIRK 235 (458)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~ 235 (458)
+|++.-.+++..+|+.+.
T Consensus 274 LivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 274 LIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEGGGTEEEEEESST
T ss_pred EEEEcCCCCeEEEEecCC
Confidence 555555677899999875
No 492
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.79 E-value=15 Score=37.72 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=27.4
Q ss_pred CCcceeEEEEccCCCCeEEEEEcCCCcEEEeecccc
Q 012712 103 HNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILER 138 (458)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~~ 138 (458)
.......++|+| ...+++.+...|.|+++....-
T Consensus 34 ~~~~~~~~afD~--~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 34 FPSTPSALAFDP--TQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCcceeecc--ccceEEEEEecccEEEecccce
Confidence 334566789999 9999999999999999976443
No 493
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.58 E-value=1.7 Score=41.37 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=28.5
Q ss_pred CceEEEEEec----CCCEEEEecCCCeEEEEECCCcceeeee
Q 012712 62 GCVNTVSFNT----DGDILISGSDDRRVILWDWKTERVKLSF 99 (458)
Q Consensus 62 ~~v~~~~~s~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 99 (458)
+.+.++++++ +..+|++.+.|+++|+||+.++.++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 4455666666 6789999999999999999999986654
No 494
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.96 E-value=3.5 Score=39.34 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCcEEEeeccc----ccceeeeeccc--------------------cccceEEEEEcC---CCCeEEEEe
Q 012712 117 DDRSIVTCAADGQVRHAQILE----RGGVETKLLGK--------------------HQGRAHKLAIEP---GSPHVFYTC 169 (458)
Q Consensus 117 ~~~~l~s~~~dg~i~vw~~~~----~~~~~~~~~~~--------------------~~~~v~~~~~~~---~~~~~l~s~ 169 (458)
+...++.+..||.+....... +.......+.. ....+..+++++ ++..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556777777888888777654 11111111111 123445566665 233688999
Q ss_pred cCCCeEEEEeCCCCCccceee
Q 012712 170 GEDGLVQHFDLRTGAATELFT 190 (458)
Q Consensus 170 ~~dg~i~iwd~~~~~~~~~~~ 190 (458)
+.|+.+|+||+.+++++....
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999865543
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.44 E-value=23 Score=31.51 Aligned_cols=195 Identities=15% Similarity=0.221 Sum_probs=102.0
Q ss_pred cCCCEEEEecCCCeEEEEECCCcceeeeeccCCCcceeEEEE--ccCCCCeE--EEEEcC-C---CcEEEeeccccccee
Q 012712 71 TDGDILISGSDDRRVILWDWKTERVKLSFHSGHNDNVFQAKI--MPFTDDRS--IVTCAA-D---GQVRHAQILERGGVE 142 (458)
Q Consensus 71 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~--l~s~~~-d---g~i~vw~~~~~~~~~ 142 (458)
|...+++....++-+.+||++ |+.+..+..+.-+.| .+.+ .- +++. |+.++. + ..|++|.+.......
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 345677777888899999987 555555533322222 2222 11 3333 444443 2 469999886432211
Q ss_pred eeecc-------ccccceEEEEE--cC-CCCeEEEEecCCCeEEEEeCC---CCC----ccceeeecccCCCCcceeecc
Q 012712 143 TKLLG-------KHQGRAHKLAI--EP-GSPHVFYTCGEDGLVQHFDLR---TGA----ATELFTCRPIDDRRNYMTVVN 205 (458)
Q Consensus 143 ~~~~~-------~~~~~v~~~~~--~~-~~~~~l~s~~~dg~i~iwd~~---~~~----~~~~~~~~~~~~~~~~~~~~~ 205 (458)
.. +. .....+..+|+ +| ++..+++....+|.+.-|-+. .+. .++.+. -...
T Consensus 142 ~~-v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-----------~~sQ 209 (381)
T PF02333_consen 142 TD-VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-----------VGSQ 209 (381)
T ss_dssp EE--CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE------------SS-
T ss_pred eE-cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-----------CCCc
Confidence 11 11 11134566666 33 354567778888998888764 222 223332 2235
Q ss_pred eEEEEECCCCCcEEEEecCCCeEEEEecCCCccCCCccCCCCCCCcCCCcc-ccccccceeEEEeC--CCC-cEEEEec-
Q 012712 206 LNAIAIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTDFGQPADYFCPPNL-IGDEQVGITGLAFS--DQS-ELLVSYN- 280 (458)
Q Consensus 206 v~~~~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~--~~~-~~l~~~~- 280 (458)
+..+..... ...|+.+-++.-|+-|+.+......... .... -.+....+..|+.- +++ .+|+.++
T Consensus 210 ~EGCVVDDe-~g~LYvgEE~~GIW~y~Aep~~~~~~~~---------v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 210 PEGCVVDDE-TGRLYVGEEDVGIWRYDAEPEGGNDRTL---------VASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp EEEEEEETT-TTEEEEEETTTEEEEEESSCCC-S--EE---------EEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred ceEEEEecc-cCCEEEecCccEEEEEecCCCCCCccee---------eecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 777888876 5688889999888888876432111000 0000 11223567777764 343 3555555
Q ss_pred -CCcEEEEEccC
Q 012712 281 -DEFIYLFTQDM 291 (458)
Q Consensus 281 -~~~i~i~~~~~ 291 (458)
+++..+|+...
T Consensus 280 G~~sf~Vy~r~~ 291 (381)
T PF02333_consen 280 GDNSFAVYDREG 291 (381)
T ss_dssp GGTEEEEEESST
T ss_pred CCCeEEEEecCC
Confidence 44799999775
No 496
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=86.32 E-value=43 Score=34.48 Aligned_cols=190 Identities=9% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCCCeEEEeeCCCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEec---------CCCEEE
Q 012712 7 NNNNKRARTSVDKALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNT---------DGDILI 77 (458)
Q Consensus 7 ~~~~~~l~~~~~d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---------~~~~l~ 77 (458)
+-|.+...--+....|.+-+.++.+.+.. -.++ ...-|++++... ...+||
T Consensus 991 ~~de~~~~p~~~~f~i~LisP~sw~vi~~-------------------iefq-~~E~v~~~k~v~L~~~~t~~~~k~yla 1050 (1366)
T KOG1896|consen 991 SRDENVIHPEGEQFSIQLISPESWEVIDK-------------------IEFQ-ENEHVLHMKYVILDDEETTKGKKPYLA 1050 (1366)
T ss_pred cccccccccccccceeEEecCCccccccc-------------------cccC-ccceeeEEEEEEEEecccccCCcceEE
Q ss_pred EecC---------CCeEEEEEC-----------CCcceeeeeccCCCcceeEEEEccCCCCeEEEEEcCCCcEEEeeccc
Q 012712 78 SGSD---------DRRVILWDW-----------KTERVKLSFHSGHNDNVFQAKIMPFTDDRSIVTCAADGQVRHAQILE 137 (458)
Q Consensus 78 s~~~---------d~~i~iwd~-----------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~dg~i~vw~~~~ 137 (458)
.|.. .|.+.|+|+ ...+....+...-++.|..++=- +|.++.+-+. .|.+|++..
T Consensus 1051 vGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~Gq--KI~v~~l~r 1125 (1366)
T KOG1896|consen 1051 VGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQGQ--KIIVRKLDR 1125 (1366)
T ss_pred EEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccCc--EEEEEEecc
Q ss_pred ccceeeeeccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecceEEEEECCCCCc
Q 012712 138 RGGVETKLLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNLNAIAIDPRNAN 217 (458)
Q Consensus 138 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 217 (458)
...+....+..-.-.+.++..-. ++++.|.--..|.+.-....-..-.+-.... ..-.+.++.|--+|++
T Consensus 1126 ~~~ligVaFiD~~~yv~s~~~vk---nlIl~gDV~ksisfl~fqeep~rlsL~srd~-------~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1126 DSELIGVAFIDLPLYVHSMKVVK---NLILAGDVMKSISFLGFQEEPYRLSLLSRDF-------EPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred CCcceeeEEeccceeEEehhhhh---hheehhhhhhceEEEEEccCceEEEEeecCC-------chhhceeeeeEEcCCe
Q ss_pred E-EEEecCCCeEEEE
Q 012712 218 L-FAVAGSDEYTRLY 231 (458)
Q Consensus 218 ~-l~~~~~dg~i~i~ 231 (458)
+ ++++..++.|++|
T Consensus 1196 L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVY 1210 (1366)
T ss_pred eEEEEEcCCCcEEEE
No 497
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=86.06 E-value=34 Score=32.99 Aligned_cols=171 Identities=12% Similarity=0.161 Sum_probs=89.7
Q ss_pred CCceEEEEEecCCCEEEEecCCCeEEEEECCCccee--eeeccCCCcceeEEEEccCC----CCeEEEEEcC-C---CcE
Q 012712 61 RGCVNTVSFNTDGDILISGSDDRRVILWDWKTERVK--LSFHSGHNDNVFQAKIMPFT----DDRSIVTCAA-D---GQV 130 (458)
Q Consensus 61 ~~~v~~~~~s~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~~~~~----~~~~l~s~~~-d---g~i 130 (458)
.+.|-.+.|.++++.+++.-.+|.|.+||...+... ......+...+..-+|-+.. ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 578899999999999999999999999999433221 12222233322222333311 1334444333 2 246
Q ss_pred EEeec--ccccceeee--eccccccceEEEEEcCCCCeEEEEecCCCeEEEEeCCCCCccceeeecccCCCCcceeecce
Q 012712 131 RHAQI--LERGGVETK--LLGKHQGRAHKLAIEPGSPHVFYTCGEDGLVQHFDLRTGAATELFTCRPIDDRRNYMTVVNL 206 (458)
Q Consensus 131 ~vw~~--~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (458)
+++.+ ......... ....+...-..+++. +| . |+.- .+++|.+|++..-+....+..+...... . ..+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G-~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~---~-~~~ 280 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FG-K-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKE---S-DDL 280 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CC-E-EEEE-eCCEEEEEEcCCceEEEEEEechhhccc---c-ccc
Confidence 67777 222211111 111111111223333 34 3 3333 6789999999888777777655322111 0 123
Q ss_pred EEE-EECCCCCcEEEEecCCCeEEEEecCCCccCCCcc
Q 012712 207 NAI-AIDPRNANLFAVAGSDEYTRLYDIRKYKWDGSTD 243 (458)
Q Consensus 207 ~~~-~~~p~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (458)
.++ +.+| ++++.+ .+..|++.|+.-........
T Consensus 281 vSl~~~s~---nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 281 VSLKPPSP---NRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred eEeecCCC---CeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 333 2333 344433 35689999998776555443
No 498
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=28 Score=32.03 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=52.2
Q ss_pred cceeEEEeCCCCcEEEEecCCcEEEEEccCCCCCCCCCCCCccccccccccCCCCccccCCCCCCcccccCceeecCccc
Q 012712 262 VGITGLAFSDQSELLVSYNDEFIYLFTQDMGLGPNPPPSSPVSTRSEASEMGSDHTSAASPSTANTDVRIAPQVYKGHRN 341 (458)
Q Consensus 262 ~~i~~~~~~~~~~~l~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (458)
-.|..+..++.|..++..+-+.+.+..+...-....+. .+++....... ...-.+.|... .
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~--------------eDgk~~v~CRt----~~i~~~~ftss-~ 164 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF--------------EDGKSTVNCRT----TPVAERFFTSS-T 164 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee--------------cCCCceEEEEe----ecccceeeccC-C
Confidence 46788889999998888776666666653211100000 00000000000 00001122222 3
Q ss_pred eeeeeEEEEecCCC---cEEEEecCCCeEEEEEecCCeE
Q 012712 342 CVTVKGVNFFGPKC---EYVVSGSDCGRIFIWKKKGGEL 377 (458)
Q Consensus 342 ~~~i~~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~ 377 (458)
..++..++| +|+. ..|..-+.|+.||+||+.....
T Consensus 165 ~ltl~Qa~W-HP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 165 SLTLKQAAW-HPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred ceeeeeccc-cCCccCCceEEEEecCcEEEEEecCCcch
Confidence 335778888 8875 5777778899999999865443
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.52 E-value=22 Score=30.30 Aligned_cols=81 Identities=14% Similarity=0.209 Sum_probs=51.7
Q ss_pred CCcEEEEEccccccccccccccccccccceEEeeeeeEeecCCCceEEEEEecCCCEEEEec------CCCeEEEEECCC
Q 012712 19 KALVDVWLRELGQLSTRNFALRRRASEDLVLRLGIYAKLDKHRGCVNTVSFNTDGDILISGS------DDRRVILWDWKT 92 (458)
Q Consensus 19 d~~i~iw~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~------~d~~i~iwd~~~ 92 (458)
-..|.+||.++.+...- -.+-.+.|++|.|..+.++++.|. ....+..||+.+
T Consensus 15 C~~lC~yd~~~~qW~~~---------------------g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP---------------------GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred CCEEEEEECCCCEeecC---------------------CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 34699999997765521 223467899999987777777653 356788999887
Q ss_pred cceeeeecc----CCCcceeEEEEccCCCCeEEE
Q 012712 93 ERVKLSFHS----GHNDNVFQAKIMPFTDDRSIV 122 (458)
Q Consensus 93 ~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~ 122 (458)
..- ..+.. .-.++|..+.+... |...+.
T Consensus 74 ~~w-~~~~~~~s~~ipgpv~a~~~~~~-d~~~~~ 105 (281)
T PF12768_consen 74 QTW-SSLGGGSSNSIPGPVTALTFISN-DGSNFW 105 (281)
T ss_pred Cee-eecCCcccccCCCcEEEEEeecc-CCceEE
Confidence 653 22211 12467888887542 443343
No 500
>PLN02153 epithiospecifier protein
Probab=85.03 E-value=27 Score=30.93 Aligned_cols=108 Identities=12% Similarity=0.183 Sum_probs=52.5
Q ss_pred CCCEEEEecCC-------CeEEEEECCCcceeeeeccCC--Cc---ceeEEEEccCCCCeEEEEEcCC-----CcEEEee
Q 012712 72 DGDILISGSDD-------RRVILWDWKTERVKLSFHSGH--ND---NVFQAKIMPFTDDRSIVTCAAD-----GQVRHAQ 134 (458)
Q Consensus 72 ~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~--~~---~i~~~~~~~~~~~~~l~s~~~d-----g~i~vw~ 134 (458)
++++++.|+.+ ..+.+||+.+.+-......+. .. ....+.+ ++.+++.|+.+ ..+.++|
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd 107 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV----GTKLYIFGGRDEKREFSDFYSYD 107 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE----CCEEEEECCCCCCCccCcEEEEE
Confidence 45666667653 257788887654322110010 10 1112222 66777787753 2467788
Q ss_pred cccccceeeeecc----ccccceEEEEEcCCCCeEEEEecCC-----------CeEEEEeCCCCCc
Q 012712 135 ILERGGVETKLLG----KHQGRAHKLAIEPGSPHVFYTCGED-----------GLVQHFDLRTGAA 185 (458)
Q Consensus 135 ~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~ 185 (458)
..+.+......+. .....-.+++. -++ ++++.|+.+ ..+.+||.++.+-
T Consensus 108 ~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W 171 (341)
T PLN02153 108 TVKNEWTFLTKLDEEGGPEARTFHSMAS-DEN-HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171 (341)
T ss_pred CCCCEEEEeccCCCCCCCCCceeeEEEE-ECC-EEEEECCccCCCccCCCcccceEEEEECCCCeE
Confidence 7765443221111 00111122222 234 567777653 2477788876543
Done!